-- dump date 20110803_095850 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type PICST_66748 150863677 4837074 1876..8355 1 NC_009042.1 ATP-dependent DNA helicase 8355 ADD3.2 4837074 ADD3.2 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001382228.2 1876 D 322104 CDS PICST_41754 126132470 4836671 complement(10686..>11192) 1 NC_009042.1 predicted protein >11192 4836671 PICST_41754 Pichia stipitis CBS 6054 predicted protein XP_001382760.1 10686 R 322104 CDS PICST_41766 150864070 4836871 complement(12766..>17103) 1 NC_009042.1 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily; go_component: membrane; go_function: ATP binding; go_process: transport; ABC transporter >17103 CDR4.1 4836871 CDR4.1 Pichia stipitis CBS 6054 ABC transporter XP_001382761.2 12766 R 322104 CDS PICST_75853 126132474 4836740 complement(<20079..21326) 1 NC_009042.1 hyphally regulated cell wall protein 21326 HYR6.6 4836740 HYR6.6 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001382762.1 <20079 R 322104 CDS PICST_29330 126131408 4836744 23735..24820 1 NC_009042.1 Dimeric dihydrodiol dehydrogenase similar to Glucose--fructose oxidoreductase precursor (GFOR); go_function: oxidoreductase activity; go_process: electron transport; metabolism; oxidoreductase (Bacterial) 24820 YUL5 4836744 YUL5 Pichia stipitis CBS 6054 oxidoreductase (Bacterial) XP_001382229.1 23735 D 322104 CDS PICST_29331 126131410 4837617 25150..>25944 1 NC_009042.1 predicted protein >25944 4837617 PICST_29331 Pichia stipitis CBS 6054 predicted protein XP_001382230.1 25150 D 322104 CDS PICST_41057 150864071 4837559 complement(26048..26668) 1 NC_009042.1 involved in secretion; go_function: molecular function unknown; endosomal Vps protein complex subunit 26668 VPS24 4837559 VPS24 Pichia stipitis CBS 6054 endosomal Vps protein complex subunit XP_001382763.2 26048 R 322104 CDS PICST_56298 150863678 4837429 27442..27921 1 NC_009042.1 go_component: integral to membrane; go_function: molecular function unknown; predicted protein 27921 4837429 PICST_56298 Pichia stipitis CBS 6054 predicted protein XP_001382231.2 27442 D 322104 CDS PICST_76038 150864072 4837139 complement(28048..29139) 1 NC_009042.1 DNA replicationn factor C multisubunit DNA binding protein and ATPase that acts as a processivity factor for DNA polymerases delta and epsilon and loads proliferating cell nuclear antigen (PCNA) on DNA; DNA replicationn factor C 29139 RCF5 4837139 RCF5 Pichia stipitis CBS 6054 DNA replicationn factor C XP_001382764.2 28048 R 322104 CDS PICST_87980 126132480 4836640 complement(29620..30177) 1 NC_009042.1 go_function: protein-methionine-S-oxide reductase activity; go_process: protein modification; predicted protein 30177 4836640 PICST_87980 Pichia stipitis CBS 6054 predicted protein XP_001382765.1 29620 R 322104 CDS PICST_87051 150864073 4837536 complement(30726..32870) 1 NC_009042.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 32870 4837536 PICST_87051 Pichia stipitis CBS 6054 predicted protein XP_001382766.2 30726 R 322104 CDS PICST_54532 150864074 4837320 complement(join(33799..33922,34007..34254)) 1 NC_009042.1 predicted protein 34254 4837320 PICST_54532 Pichia stipitis CBS 6054 predicted protein XP_001382767.2 33799 R 322104 CDS PICST_29338 150863679 4836804 35193..36515 1 NC_009042.1 predicted protein 36515 4836804 PICST_29338 Pichia stipitis CBS 6054 predicted protein XP_001382232.2 35193 D 322104 CDS PICST_34758 150863680 4837182 36764..37399 1 NC_009042.1 predicted protein 37399 4837182 PICST_34758 Pichia stipitis CBS 6054 predicted protein XP_001382233.2 36764 D 322104 CDS PICST_29340 126132486 4836973 complement(join(37778..37820,38102..38379)) 1 NC_009042.1 predicted protein 38379 4836973 PICST_29340 Pichia stipitis CBS 6054 predicted protein XP_001382768.1 37778 R 322104 CDS PICST_55180 126131418 4837376 39422..40636 1 NC_009042.1 acetyl-CoA C-acyltransferase, peroxisomal acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative; acetyl-CoA C-acyltransferase, peroxisomal 40636 POT13 4837376 POT13 Pichia stipitis CBS 6054 acetyl-CoA C-acyltransferase, peroxisomal XP_001382234.1 39422 D 322104 CDS PICST_56382 150864075 4837047 complement(40782..>41465) 1 NC_009042.1 go_component: membrane; go_function: phosphatidate cytidylyltransferase activity; go_process: phospholipid biosynthesis; predicted protein >41465 4837047 PICST_56382 Pichia stipitis CBS 6054 predicted protein XP_001382769.2 40782 R 322104 CDS PICST_42355 150864076 4836716 complement(44340..45260) 1 NC_009042.1 conserved nucleotide binding protein 45260 NBP352 4836716 NBP352 Pichia stipitis CBS 6054 conserved nucleotide binding protein XP_001382770.2 44340 R 322104 CDS PICST_56161 150863681 4836762 <45612..47048 1 NC_009042.1 predicted protein 47048 4836762 PICST_56161 Pichia stipitis CBS 6054 predicted protein XP_001382235.2 <45612 D 322104 CDS PICST_42490 150864077 4836726 complement(47102..48952) 1 NC_009042.1 predicted protein 48952 4836726 PICST_42490 Pichia stipitis CBS 6054 predicted protein XP_001382771.2 47102 R 322104 CDS PICST_55602 150863682 4836701 49480..51291 1 NC_009042.1 go_function: oxidoreductase activity; go_process: electron transport; NADPH-ferrihemoprotein reductase 51291 TAH13 4836701 TAH13 Pichia stipitis CBS 6054 NADPH-ferrihemoprotein reductase XP_001382236.2 49480 D 322104 CDS PICST_55301 150863683 4837164 <51739..53010 1 NC_009042.1 Phenylalanyl-tRNA synthetase, mitochondrial precursor (Phenylalanine--tRNA ligase) (PheRS); go_function: phenylalanine-tRNA ligase activity; ATP binding; go_process: phenylalanyl-tRNA aminoacylation; phenylalanyl-tRNA synthetase alpha subunit, mitochondrial 53010 MSF1 4837164 MSF1 Pichia stipitis CBS 6054 phenylalanyl-tRNA synthetase alpha subunit, mitochondrial XP_001382237.2 <51739 D 322104 CDS PICST_66753 126131426 4837151 join(53369..53376,53437..54058) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; mitochondrial ribosome large subunit protein L16 54058 MPRL16 4837151 MPRL16 Pichia stipitis CBS 6054 mitochondrial ribosome large subunit protein L16 XP_001382238.1 53369 D 322104 CDS PICST_34764 150863684 4836986 join(54272..54473,54529..54659) 1 NC_009042.1 hypothetical protein 54659 4836986 PICST_34764 Pichia stipitis CBS 6054 hypothetical protein XP_001382239.2 54272 D 322104 CDS PICST_29351 150863685 4837127 join(54820..54822,54868..55780,55819..55865) 1 NC_009042.1 KOG1060 Vesicle coat complex AP-3; Vesicle coat complex AP-3 55865 VCC3.2 4837127 VCC3.2 Pichia stipitis CBS 6054 Vesicle coat complex AP-3 XP_001382240.2 54820 D 322104 CDS PICST_54577 150864078 4837134 complement(join(56108..56284,56300..56632)) 1 NC_009042.1 Molecular chaperone (DnaJ superfamily) J protein type 3; J protein type 3 56632 JJJ3 4837134 JJJ3 Pichia stipitis CBS 6054 J protein type 3 XP_001382772.2 56108 R 322104 CDS PICST_88096 150863686 4836639 56889..58136 1 NC_009042.1 RNA polymerase I alpha subunit 58136 RPA49 4836639 RPA49 Pichia stipitis CBS 6054 RNA polymerase I alpha subunit XP_001382241.2 56889 D 322104 CDS PICST_34767 150864079 4837233 complement(58252..59070) 1 NC_009042.1 hypothetical protein 59070 4837233 PICST_34767 Pichia stipitis CBS 6054 hypothetical protein XP_001382773.2 58252 R 322104 CDS PICST_40471 150864080 4836692 complement(61979..62623) 1 NC_009042.1 go_function: copper, zinc superoxide dismutase activity; metal ion binding; go_process: superoxide metabolism; Cu/Zn superoxide dismutase 62623 SOD2.2 4836692 SOD2.2 Pichia stipitis CBS 6054 Cu/Zn superoxide dismutase XP_001382774.2 61979 R 322104 CDS PICST_29356 150863687 4836731 join(63241..63403,63940..65522) 1 NC_009042.1 go_function: carboxylic ester hydrolase activity; go_process: lipid metabolism; Triglyceride lipase-cholesterol esterase 65522 TGL1 4836731 TGL1 Pichia stipitis CBS 6054 Triglyceride lipase-cholesterol esterase XP_001382242.2 63241 D 322104 CDS PICST_66755 150863688 4837381 67089..70040 1 NC_009042.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; hypothetical protein 70040 4837381 PICST_66755 Pichia stipitis CBS 6054 hypothetical protein XP_001382243.2 67089 D 322104 CDS PICST_87504 126131438 4837664 72301..73563 1 NC_009042.1 Regulatory Particle Non-ATPase similar to RPN4 of Candida albicans; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; hypothetical zinc finger protein 73563 RPN4 4837664 RPN4 Pichia stipitis CBS 6054 hypothetical zinc finger protein XP_001382244.1 72301 D 322104 CDS PICST_29359 126132500 4837671 complement(73696..75078) 1 NC_009042.1 Polyadenylate-binding protein (RRM superfamily) simialr to Nucleolin; possible Polyadenylate-binding protein (RRM superfamily) 75078 NPL6 4837671 NPL6 Pichia stipitis CBS 6054 possible Polyadenylate-binding protein (RRM superfamily) XP_001382775.1 73696 R 322104 CDS PICST_34770 150864081 4837507 complement(75458..78061) 1 NC_009042.1 Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) very similar to AFG3 (TAT-binding homolog 10); go_function: ATP binding; metalloendopeptidase activity; go_process: proteolysis and peptidolysis; Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) 78061 RCA1 4837507 RCA1 Pichia stipitis CBS 6054 Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) XP_001382776.2 75458 R 322104 CDS PICST_55822 150863689 4837038 79455..80474 1 NC_009042.1 allantoinase (Allantoate amidinohydrolase); allantoinase 80474 DAL2 4837038 DAL2 Pichia stipitis CBS 6054 allantoinase XP_001382245.2 79455 D 322104 CDS PICST_54329 150863690 4837628 join(<80933..81439,81458..81841) 1 NC_009042.1 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family 81841 4837628 PICST_54329 Pichia stipitis CBS 6054 Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family XP_001382246.2 <80933 D 322104 CDS PICST_81568 126131444 4837386 join(82270..82327,82774..82904) 1 NC_009042.1 . Similar to S. pombe hypothetical protein; go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; Subunit i/j of mitochondrial ATP synthase 82904 ATP18 4837386 ATP18 Pichia stipitis CBS 6054 Subunit i/j of mitochondrial ATP synthase XP_001382247.1 82270 D 322104 CDS PICST_76567 126131446 4837284 83728..84456 1 NC_009042.1 predicted protein 84456 4837284 PICST_76567 Pichia stipitis CBS 6054 predicted protein XP_001382248.1 83728 D 322104 CDS PICST_55476 150864082 4837059 complement(join(84568..85718,85740..>86082)) 1 NC_009042.1 predicted protein 85718 4837059 PICST_55476 Pichia stipitis CBS 6054 predicted protein XP_001382777.2 84568 R 322104 CDS PICST_40839 150863691 4837535 87413..88984 1 NC_009042.1 go_component: membrane; go_function: transporter activity; go_process: transport; vacuolar metal transporter 88984 SMF3 4837535 SMF3 Pichia stipitis CBS 6054 vacuolar metal transporter XP_001382249.2 87413 D 322104 CDS PICST_41351 150864083 4836991 complement(89067..>90632) 1 NC_009042.1 predicted protein >90632 4836991 PICST_41351 Pichia stipitis CBS 6054 predicted protein XP_001382778.2 89067 R 322104 CDS PICST_41725 126132508 4837545 complement(91371..93086) 1 NC_009042.1 go_component: membrane; go_process: transport; predicted protein 93086 4837545 PICST_41725 Pichia stipitis CBS 6054 predicted protein XP_001382779.1 91371 R 322104 CDS PICST_29369 150863692 4836682 96738..97232 1 NC_009042.1 predicted protein 97232 4836682 PICST_29369 Pichia stipitis CBS 6054 predicted protein XP_001382250.2 96738 D 322104 CDS PICST_54310 150864084 4837207 complement(99879..101699) 1 NC_009042.1 go_component: membrane; go_function: drug transporter activity; antiporter activity; go_process: multidrug transport; predicted protein 101699 4837207 PICST_54310 Pichia stipitis CBS 6054 predicted protein XP_001382780.2 99879 R 322104 CDS PICST_87647 150864085 4836787 complement(102111..103484) 1 NC_009042.1 Mannan endo-1,6-alpha-mannosidase DFG5 precursor (Endo-alpha-1->6-D-mannanase DFG5); filamentous growth, cell polarity and elongation 103484 DFG5 4836787 DFG5 Pichia stipitis CBS 6054 filamentous growth, cell polarity and elongation XP_001382781.2 102111 R 322104 CDS PICST_41148 150864086 4837359 complement(104481..105434) 1 NC_009042.1 go_function: catalytic activity; go_process: metabolism; predicted protein 105434 4837359 PICST_41148 Pichia stipitis CBS 6054 predicted protein XP_001382782.2 104481 R 322104 CDS PICST_41012 150864087 4837605 complement(join(105792..106696,106766..107671,107852..107911,107972..108476,108615..>108782)) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 108476 4837605 PICST_41012 Pichia stipitis CBS 6054 predicted protein XP_001382783.2 105792 R 322104 CDS PICST_42610 150864088 4836777 complement(109896..111878) 1 NC_009042.1 go_component: clathrin vesicle coat; go_process: intracellular protein transport; predicted protein 111878 4836777 PICST_42610 Pichia stipitis CBS 6054 predicted protein XP_001382784.2 109896 R 322104 CDS PICST_29375 150863693 4837510 112509..112892 1 NC_009042.1 predicted protein 112892 4837510 PICST_29375 Pichia stipitis CBS 6054 predicted protein XP_001382251.2 112509 D 322104 CDS PICST_41690 150864089 4837658 complement(113078..116860) 1 NC_009042.1 predicted protein 116860 4837658 PICST_41690 Pichia stipitis CBS 6054 predicted protein XP_001382785.2 113078 R 322104 CDS PICST_88040 150864090 4837378 complement(join(117367..118203,118246..120674,120720..121266)) 1 NC_009042.1 go_function: nucleic acid binding; helicase activity; ATP binding; part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) ExtraCellular Mutant DEAH-box protein involved in ribosome synthesis 121266 ECM16 4837378 ECM16 Pichia stipitis CBS 6054 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) ExtraCellular Mutant DEAH-box protein involved in ribosome synthesis XP_001382786.2 117367 R 322104 CDS PICST_41744 150863694 4836819 122187..122846 1 NC_009042.1 predicted protein 122846 4836819 PICST_41744 Pichia stipitis CBS 6054 predicted protein XP_001382252.2 122187 D 322104 CDS PICST_34779 126132524 4836992 complement(122970..123716) 1 NC_009042.1 predicted protein 123716 4836992 PICST_34779 Pichia stipitis CBS 6054 predicted protein XP_001382787.1 122970 R 322104 CDS PICST_29380 150863695 4836816 join(124146..124365,124564..125417) 1 NC_009042.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 125417 4836816 PICST_29380 Pichia stipitis CBS 6054 predicted protein XP_001382253.2 124146 D 322104 CDS PICST_81799 150864091 4837081 complement(join(125589..126832,126890..127424)) 1 NC_009042.1 substrate-specific activator of APC-dependent proteolysis 127424 CDH1 4837081 CDH1 Pichia stipitis CBS 6054 substrate-specific activator of APC-dependent proteolysis XP_001382788.2 125589 R 322104 CDS PICST_29382 150863696 4837058 128468..129820 1 NC_009042.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; predicted protein 129820 4837058 PICST_29382 Pichia stipitis CBS 6054 predicted protein XP_001382254.2 128468 D 322104 CDS PICST_76559 126131460 4836990 130156..130875 1 NC_009042.1 go_component: mitochondrion; go_function: NADH dehydrogenase (ubiquinone) activity; go_process: mitochondrial electron transport, NADH to ubiquinone; subunit NUHM of NADH:Ubiquinone Oxidoreductase 130875 NUO24 4836990 NUO24 Pichia stipitis CBS 6054 subunit NUHM of NADH:Ubiquinone Oxidoreductase XP_001382255.1 130156 D 322104 CDS PICST_54505 126131462 4837166 131617..132852 1 NC_009042.1 go_process: amino acid metabolism; cystathionine beta-lyase 132852 STR3 4837166 STR3 Pichia stipitis CBS 6054 cystathionine beta-lyase XP_001382256.1 131617 D 322104 CDS PICST_81646 150863697 4836927 join(133358..133772,133794..135229) 1 NC_009042.1 Required for DNA-damage repair, full levels of gene conversion and sporulationbinds URS1 and CAR1RFA1, RFA2, and RFA3 make up RPA; go_function: nucleic acid binding; DNA replication factor A 135229 RFA1 4836927 RFA1 Pichia stipitis CBS 6054 DNA replication factor A XP_001382257.2 133358 D 322104 CDS PICST_55413 150864092 4837031 complement(join(135338..135481,135500..136393,136451..138239,138273..138454,138535..138570)) 1 NC_009042.1 has possible role in nuclear transport and regulation of pleiotropic drug resistance; member of the karyopherin-beta family 138570 PDR6 4837031 PDR6 Pichia stipitis CBS 6054 member of the karyopherin-beta family XP_001382789.2 135338 R 322104 CDS PICST_75738 150863698 4837509 139582..141714 1 NC_009042.1 go_function: metalloexopeptidase activity; go_process: proteolysis and peptidolysis; X-Pro aminopeptidase 141714 XPA1 4837509 XPA1 Pichia stipitis CBS 6054 X-Pro aminopeptidase XP_001382258.2 139582 D 322104 CDS PICST_82083 150864093 4837073 complement(join(141835..144168,144217..145115,145203..145353)) 1 NC_009042.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; ATPase/DNA helicase 145353 RAD5 4837073 RAD5 Pichia stipitis CBS 6054 ATPase/DNA helicase XP_001382790.2 141835 R 322104 CDS PICST_66766 150864094 4836835 complement(145889..150121) 1 NC_009042.1 serine-rich hypothetical cell wall protein; hypothetical cell wall protein 150121 MUC2 4836835 MUC2 Pichia stipitis CBS 6054 hypothetical cell wall protein XP_001382791.2 145889 R 322104 CDS PICST_66767 126131468 4836642 153893..155371 1 NC_009042.1 aromatic amino acid aminotransferase 155371 ARO8 4836642 ARO8 Pichia stipitis CBS 6054 aromatic amino acid aminotransferase XP_001382259.1 153893 D 322104 CDS PICST_56141 150863699 4837333 join(155692..155728,155823..155949,156004..157210,157268..158401,158465..158839) 1 NC_009042.1 protein involved in cell-cycle regulation of histone transcription 158839 HIR1 4837333 HIR1 Pichia stipitis CBS 6054 protein involved in cell-cycle regulation of histone transcription XP_001382260.2 155692 D 322104 CDS PICST_29392 150864095 4836766 complement(158959..159648) 1 NC_009042.1 coiled-coil membrane protein 159648 SWF3 4836766 SWF3 Pichia stipitis CBS 6054 coiled-coil membrane protein XP_001382792.2 158959 R 322104 CDS PICST_81982 150863700 4836770 join(160653..160899,161002..161606) 1 NC_009042.1 go_component: protein kinase CK2 complex; go_function: protein kinase CK2 regulator activity; casein kinase II, regulatory (beta) subunit 161606 CKB1 4836770 CKB1 Pichia stipitis CBS 6054 casein kinase II, regulatory (beta) subunit XP_001382261.2 160653 D 322104 CDS PICST_41033 150864096 4837615 complement(161794..162465) 1 NC_009042.1 may be involved in assembly/maturation of mitochondrial iron-sulfur proteins; molecular chaperone 162465 JAC1 4837615 JAC1 Pichia stipitis CBS 6054 molecular chaperone XP_001382793.2 161794 R 322104 CDS PICST_54326 150863701 4836795 join(163152..163255,163280..163841) 1 NC_009042.1 go_function: nucleic acid binding; GNAT family acetyltransferase with 2 zinc fingers 163841 CWC24 4836795 CWC24 Pichia stipitis CBS 6054 GNAT family acetyltransferase with 2 zinc fingers XP_001382262.2 163152 D 322104 CDS PICST_34790 150863702 4836894 join(164427..164919,165001..165152) 1 NC_009042.1 hypothetical protein 165152 4836894 PICST_34790 Pichia stipitis CBS 6054 hypothetical protein XP_001382263.2 164427 D 322104 CDS PICST_76493 126131478 4836969 165747..166811 1 NC_009042.1 go_function: nucleotidyltransferase activity; go_process: biosynthesis; choline phosphate cytidylyltransferase 166811 MUQ1 4836969 MUQ1 Pichia stipitis CBS 6054 choline phosphate cytidylyltransferase XP_001382264.1 165747 D 322104 CDS PICST_27932 126132538 4837122 complement(<167178..167399) 1 NC_009042.1 ATPase stabilizing factor 15 kDa protein 167399 STF2 4837122 STF2 Pichia stipitis CBS 6054 ATPase stabilizing factor 15 kDa protein XP_001382794.1 <167178 R 322104 CDS PICST_41302 150863703 4836717 168724..>169449 1 NC_009042.1 go_function: copper, zinc superoxide dismutase activity; metal ion binding; go_process: superoxide metabolism; Cu/Zn superoxide dismutase >169449 SOD2.1 4836717 SOD2.1 Pichia stipitis CBS 6054 Cu/Zn superoxide dismutase XP_001382265.2 168724 D 322104 CDS PICST_29400 150864097 4837332 complement(169767..171416) 1 NC_009042.1 A(acid, azole) Q(quinidine) Resistance 171416 AQR3 4837332 AQR3 Pichia stipitis CBS 6054 A(acid, azole) Q(quinidine) Resistance XP_001382795.2 169767 R 322104 CDS PICST_82344 150864098 4836928 complement(join(171710..172493,172509..173158)) 1 NC_009042.1 Arginyl-tRNA--protein transferase 1 (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1); go_function: arginyltransferase activity; go_process: protein arginylation; regulation of protein catabolism; arginyl-tRNA-protein transferase 173158 ATE1 4836928 ATE1 Pichia stipitis CBS 6054 arginyl-tRNA-protein transferase XP_001382796.2 171710 R 322104 CDS PICST_81830 150863704 4837660 173736..174944 1 NC_009042.1 go_component: transcription factor TFIIF complex; go_function: RNA polymerase II transcription factor activity; ATP binding; go_process: transcription initiation from RNA polymerase II promoter; predicted protein 174944 4837660 PICST_81830 Pichia stipitis CBS 6054 predicted protein XP_001382266.2 173736 D 322104 CDS PICST_41276 126132544 4837035 complement(175331..>175561) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein >175561 4837035 PICST_41276 Pichia stipitis CBS 6054 predicted protein XP_001382797.1 175331 R 322104 CDS PICST_54253 150864099 4836629 complement(join(176294..176660,176688..177009,177127..177301)) 1 NC_009042.1 go_component: spliceosome complex; go_process: RNA splicing; predicted protein 177301 4836629 PICST_54253 Pichia stipitis CBS 6054 predicted protein XP_001382798.2 176294 R 322104 CDS PICST_40364 150863705 4836798 <178924..>180399 1 NC_009042.1 conserved hypothetical membrane protein >180399 4836798 PICST_40364 Pichia stipitis CBS 6054 conserved hypothetical membrane protein XP_001382267.2 <178924 D 322104 CDS PICST_40781 150863706 4837576 181418..182332 1 NC_009042.1 go_function: urate oxidase activity; go_process: purine base metabolism; peroxisomal urate oxidase 182332 URO1 4837576 URO1 Pichia stipitis CBS 6054 peroxisomal urate oxidase XP_001382268.2 181418 D 322104 CDS PICST_54676 150863707 4837613 join(182678..182792,182826..184024) 1 NC_009042.1 Ubiquitin--protein ligase molybdopterin-converting factor (SPAC1A6.10); go_function: catalytic activity; Ubiquitin--protein ligase molybdopterin-converting factor 184024 YEX1 4837613 YEX1 Pichia stipitis CBS 6054 Ubiquitin--protein ligase molybdopterin-converting factor XP_001382269.2 182678 D 322104 CDS PICST_66772 150863708 4837110 184458..185150 1 NC_009042.1 predicted protein 185150 4837110 PICST_66772 Pichia stipitis CBS 6054 predicted protein XP_001382270.2 184458 D 322104 CDS PICST_29408 150864100 4837595 complement(185485..186699) 1 NC_009042.1 mitochondrial carrier protein, involved in the accumulation of CoA in the mitochondrial matrix LEU5 does not encode an alpha-IPM synthase; go_component: membrane; go_function: binding; go_process: transport; mitochondrial carrier protein 186699 LEU5 4837595 LEU5 Pichia stipitis CBS 6054 mitochondrial carrier protein XP_001382799.2 185485 R 322104 CDS PICST_81430 150864101 4836841 complement(join(188114..189115,189326..189400,189506..189709)) 1 NC_009042.1 for exit from pachytene; meiosis-specific protein 189709 NDT80 4836841 NDT80 Pichia stipitis CBS 6054 meiosis-specific protein XP_001382800.2 188114 R 322104 CDS PICST_81647 150863709 4837612 join(191370..192414,192472..192718,192776..193739) 1 NC_009042.1 hypothetical protein 193739 4837612 PICST_81647 Pichia stipitis CBS 6054 hypothetical protein XP_001382271.2 191370 D 322104 CDS PICST_29411 150864102 4836961 complement(194000..194587) 1 NC_009042.1 predicted protein 194587 4836961 PICST_29411 Pichia stipitis CBS 6054 predicted protein XP_001382801.2 194000 R 322104 CDS PICST_56099 150864103 4837519 complement(join(195914..196401,196444..196684)) 1 NC_009042.1 predicted protein 196684 4837519 PICST_56099 Pichia stipitis CBS 6054 predicted protein XP_001382802.2 195914 R 322104 CDS PICST_42049 150863710 4837280 <197995..199263 1 NC_009042.1 predicted protein 199263 4837280 PICST_42049 Pichia stipitis CBS 6054 predicted protein XP_001382272.2 <197995 D 322104 CDS PICST_34797 126132556 4837262 complement(199313..200581) 1 NC_009042.1 predicted protein 200581 4837262 PICST_34797 Pichia stipitis CBS 6054 predicted protein XP_001382803.1 199313 R 322104 CDS PICST_55023 150863711 4837662 201284..203263 1 NC_009042.1 go_component: membrane; go_function: transporter activity; go_process: transport; urea permease 203263 DUR4 4837662 DUR4 Pichia stipitis CBS 6054 urea permease XP_001382273.2 201284 D 322104 CDS PICST_54885 150864104 4836945 complement(203271..204062) 1 NC_009042.1 methylates the 21S (mitochondrial) rRNA at position U2791; Mitochondrial rRNA Methyltransferase 204062 MRM2 4836945 MRM2 Pichia stipitis CBS 6054 Mitochondrial rRNA Methyltransferase XP_001382804.2 203271 R 322104 CDS PICST_70098 150863712 4837153 join(205470..205812,205855..206190,206239..207353) 1 NC_009042.1 predicted protein 207353 4837153 PICST_70098 Pichia stipitis CBS 6054 predicted protein XP_001382274.2 205470 D 322104 CDS PICST_81480 126131500 4836710 208047..209219 1 NC_009042.1 Arylacetamide deacetylase 209219 ACD3 4836710 ACD3 Pichia stipitis CBS 6054 Arylacetamide deacetylase XP_001382275.1 208047 D 322104 CDS PICST_81594 126131502 4837113 join(211085..211489,211562..211993) 1 NC_009042.1 predicted protein 211993 4837113 PICST_81594 Pichia stipitis CBS 6054 predicted protein XP_001382276.1 211085 D 322104 CDS PICST_29419 126132560 4836957 complement(212707..213969) 1 NC_009042.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 213969 4836957 PICST_29419 Pichia stipitis CBS 6054 predicted protein XP_001382805.1 212707 R 322104 CDS PICST_34802 150863713 4837194 215253..216914 1 NC_009042.1 putative permease 216914 4837194 PICST_34802 Pichia stipitis CBS 6054 putative permease XP_001382277.2 215253 D 322104 CDS PICST_54974 150864105 4837490 complement(217780..218847) 1 NC_009042.1 go_function: lyase activity; go_process: amino acid metabolism; predicted protein 218847 4837490 PICST_54974 Pichia stipitis CBS 6054 predicted protein XP_001382806.2 217780 R 322104 CDS PICST_66779 150863714 4836681 join(220697..220955,220980..221800) 1 NC_009042.1 predicted protein 221800 4836681 PICST_66779 Pichia stipitis CBS 6054 predicted protein XP_001382278.2 220697 D 322104 CDS PICST_87725 150864106 4836868 complement(join(221820..222844,222932..223183,223235..224198)) 1 NC_009042.1 predicted protein 224198 4836868 PICST_87725 Pichia stipitis CBS 6054 predicted protein XP_001382807.2 221820 R 322104 CDS PICST_54439 150863715 4836691 224925..227432 1 NC_009042.1 required for mitotic chromosome segregation and meiotic recombination with sequence similarity to Saccharomyces cerevisiae YPL008W (CHL1); YPL008W (CHL1)-like protein 227432 CHL1 4836691 CHL1 Pichia stipitis CBS 6054 YPL008W (CHL1)-like protein XP_001382279.2 224925 D 322104 CDS PICST_54622 150864107 4836948 complement(227493..228218) 1 NC_009042.1 predicted protein 228218 4836948 PICST_54622 Pichia stipitis CBS 6054 predicted protein XP_001382808.2 227493 R 322104 CDS PICST_76301 150864108 4836683 complement(228414..231368) 1 NC_009042.1 go_component: nuclear pore; go_process: transport; predicted protein 231368 4836683 PICST_76301 Pichia stipitis CBS 6054 predicted protein XP_001382809.2 228414 R 322104 CDS PICST_41155 150864109 4837505 complement(232210..233829) 1 NC_009042.1 go_component: membrane; go_process: transport; predicted protein 233829 4837505 PICST_41155 Pichia stipitis CBS 6054 predicted protein XP_001382810.2 232210 R 322104 CDS PICST_66783 150863716 4837214 join(237518..237754,237794..238767,238927..240715) 1 NC_009042.1 RNA processing protein 240715 REG1 4837214 REG1 Pichia stipitis CBS 6054 RNA processing protein XP_001382280.2 237518 D 322104 CDS PICST_56134 150863717 4836853 join(242281..242357,242373..243210,243244..243369) 1 NC_009042.1 predicted protein 243369 4836853 PICST_56134 Pichia stipitis CBS 6054 predicted protein XP_001382281.2 242281 D 322104 CDS PICST_70893 126132572 4837112 complement(243648..243830) 1 NC_009042.1 involved in copper metabolism and assembly of cytochrome oxidase; go_component: mitochondrial intermembrane space; go_function: copper ion binding; copper chaperone activity; go_process: copper ion transport; Cytochrome c oxidase assembly protein/Cu2+ chaperone 243830 COX17 4837112 COX17 Pichia stipitis CBS 6054 Cytochrome c oxidase assembly protein/Cu2+ chaperone XP_001382811.1 243648 R 322104 CDS PICST_66784 150863718 4836900 244747..248826 1 NC_009042.1 predicted protein 248826 4836900 PICST_66784 Pichia stipitis CBS 6054 predicted protein XP_001382282.2 244747 D 322104 CDS PICST_40776 150864110 4837097 complement(248952..250181) 1 NC_009042.1 go_component: eukaryotic translation initiation factor 2B complex; go_function: translation initiation factor activity; GTP binding; go_process: translational initiation; predicted protein 250181 4837097 PICST_40776 Pichia stipitis CBS 6054 predicted protein XP_001382812.2 248952 R 322104 CDS PICST_42357 150864111 4837248 complement(250546..251943) 1 NC_009042.1 predicted protein 251943 4837248 PICST_42357 Pichia stipitis CBS 6054 predicted protein XP_001382813.2 250546 R 322104 CDS PICST_29434 150863719 4837550 252396..>253012 1 NC_009042.1 predicted protein >253012 4837550 PICST_29434 Pichia stipitis CBS 6054 predicted protein XP_001382283.2 252396 D 322104 CDS PICST_41699 150864112 4837361 complement(join(253197..254802,254881..254948)) 1 NC_009042.1 predicted protein 254948 4837361 PICST_41699 Pichia stipitis CBS 6054 predicted protein XP_001382814.2 253197 R 322104 CDS PICST_69996 126132580 4837436 complement(255860..257905) 1 NC_009042.1 dnaK/HSP70/ BiP family ATPase and chaperone involved in translocation of nascent polypeptides across the ER membrane 8 kDa glucose-regulated protein homolog precursor (Immunoglobulin heavy chain binding protein homolog) (BIP) (GRP78); dnaK/HSP70/ BiP family ATPase and chaperone 257905 KAR2 4837436 KAR2 Pichia stipitis CBS 6054 dnaK/HSP70/ BiP family ATPase and chaperone XP_001382815.1 255860 R 322104 CDS PICST_82287 150863720 4836745 join(259889..260180,260232..261265) 1 NC_009042.1 go_function: cAMP-dependent protein kinase regulator activity; go_process: signal transduction; cAMP-dependent protein kinase regulatory subunit (PKA regulatory subunit) 261265 BCY1 4836745 BCY1 Pichia stipitis CBS 6054 cAMP-dependent protein kinase regulatory subunit (PKA regulatory subunit) XP_001382284.2 259889 D 322104 CDS PICST_41500 126131520 4836715 261935..262387 1 NC_009042.1 go_component: integral to membrane; go_function: molecular function unknown; predicted protein 262387 4836715 PICST_41500 Pichia stipitis CBS 6054 predicted protein XP_001382285.1 261935 D 322104 CDS PICST_66788 150864113 4836936 complement(join(266071..266561,266658..266988)) 1 NC_009042.1 predicted protein 266988 4836936 PICST_66788 Pichia stipitis CBS 6054 predicted protein XP_001382816.2 266071 R 322104 CDS PICST_75818 150863721 4836742 join(267789..267971,268362..268988,269097..269672,269721..270176) 1 NC_009042.1 predicted protein 270176 4836742 PICST_75818 Pichia stipitis CBS 6054 predicted protein XP_001382286.2 267789 D 322104 CDS PICST_82041 150864114 4836946 complement(join(270472..272362,272432..272535)) 1 NC_009042.1 predicted protein 272535 4836946 PICST_82041 Pichia stipitis CBS 6054 predicted protein XP_001382817.2 270472 R 322104 CDS PICST_29444 150864115 4837170 complement(274723..278130) 1 NC_009042.1 go_function: DNA binding; transcription factor activity; zinc ion binding; Fungal specific transcription factor 278130 FST6 4837170 FST6 Pichia stipitis CBS 6054 Fungal specific transcription factor XP_001382818.2 274723 R 322104 CDS PICST_87650 150863722 4837175 join(279956..280811,280848..281851) 1 NC_009042.1 go_process: intracellular signaling cascade; predicted protein 281851 4837175 PICST_87650 Pichia stipitis CBS 6054 predicted protein XP_001382287.2 279956 D 322104 CDS PICST_82327 150863723 4837101 282394..283635 1 NC_009042.1 predicted protein 283635 4837101 PICST_82327 Pichia stipitis CBS 6054 predicted protein XP_001382288.2 282394 D 322104 CDS PICST_40872 150863724 4836774 284076..285833 1 NC_009042.1 predicted protein 285833 4836774 PICST_40872 Pichia stipitis CBS 6054 predicted protein XP_001382289.2 284076 D 322104 CDS PICST_40594 150863725 4836940 <288233..289408 1 NC_009042.1 go_component: chromatin silencing complex; go_function: DNA binding; go_process: chromatin silencing; regulation of transcription, DNA-dependent; NAD-dependent histone deacetylase SIR2 (Regulatory protein SIR2) (Silent information regulator 2) 289408 SIR3 4836940 SIR3 Pichia stipitis CBS 6054 NAD-dependent histone deacetylase SIR2 (Regulatory protein SIR2) (Silent information regulator 2) XP_001382290.2 <288233 D 322104 CDS PICST_54632 150864116 4837360 complement(join(289516..290976,291133..291447)) 1 NC_009042.1 go_process: intracellular signaling cascade; predicted protein 291447 4837360 PICST_54632 Pichia stipitis CBS 6054 predicted protein XP_001382819.2 289516 R 322104 CDS PICST_82260 126132590 4836647 complement(join(292016..292507,292532..293410)) 1 NC_009042.1 Mannan endo-1,6-alpha-mannosidase DCW1 precursor (Endo-alpha-1->6-D-mannanase DCW1) (Defective cell wall 1); Defective Cell Wall 293410 DCW1 4836647 DCW1 Pichia stipitis CBS 6054 Defective Cell Wall XP_001382820.1 292016 R 322104 CDS PICST_66798 150864117 4836863 complement(294317..296281) 1 NC_009042.1 hypothetical protein 296281 4836863 PICST_66798 Pichia stipitis CBS 6054 hypothetical protein XP_001382821.2 294317 R 322104 CDS PICST_81360 150863726 4836905 298030..300105 1 NC_009042.1 go_function: phospholipase activity; go_process: phospholipid catabolism; phospholipase B (lysophospholipase) 300105 PLB4 4836905 PLB4 Pichia stipitis CBS 6054 phospholipase B (lysophospholipase) XP_001382291.2 298030 D 322104 CDS PICST_75881 150863727 4837108 301239..302738 1 NC_009042.1 predicted protein 302738 4837108 PICST_75881 Pichia stipitis CBS 6054 predicted protein XP_001382292.2 301239 D 322104 CDS PICST_54946 150864118 4837227 complement(join(302963..303784,303854..305572)) 1 NC_009042.1 go_component: intracellular; regulator of Ty1 Transposition 305572 ESC4 4837227 ESC4 Pichia stipitis CBS 6054 regulator of Ty1 Transposition XP_001382822.2 302963 R 322104 CDS PICST_4391 150864119 4836912 complement(<313437..>314849) 1 NC_009042.1 Agglutinin-like protein 1 precursor >314849 ALS1 4836912 ALS1 Pichia stipitis CBS 6054 Agglutinin-like protein 1 precursor XP_001382823.2 <313437 R 322104 CDS PICST_34825 150864120 4837451 complement(join(317751..318525,318616..319250)) 1 NC_009042.1 hypothetical permease 319250 4837451 PICST_34825 Pichia stipitis CBS 6054 hypothetical permease XP_001382824.2 317751 R 322104 CDS PICST_81868 150864121 4837409 complement(join(319950..321086,321135..321392)) 1 NC_009042.1 go_component: nucleus; go_process: regulation of cell cycle; G2/mitotic-specific cyclin 321392 CLB2 4837409 CLB2 Pichia stipitis CBS 6054 G2/mitotic-specific cyclin XP_001382825.2 319950 R 322104 CDS PICST_29459 150864122 4837065 complement(join(321950..322151,322427..322430,322454..322519,322841..323042)) 1 NC_009042.1 predicted protein 323042 4837065 PICST_29459 Pichia stipitis CBS 6054 predicted protein XP_001382826.2 321950 R 322104 CDS PICST_29461 126131536 4836648 join(325342..325344,325423..325968) 1 NC_009042.1 adenine phosphoribosyltransferase (APT1) (APT2); go_process: nucleoside metabolism; adenine phosphoribosyltransferase 325968 APT1 4836648 APT1 Pichia stipitis CBS 6054 adenine phosphoribosyltransferase XP_001382293.1 325342 D 322104 CDS PICST_54635 126132604 4837355 complement(326079..326342) 1 NC_009042.1 go_component: microtubule associated complex; go_function: microtubule motor activity; go_process: microtubule-based process; predicted protein 326342 4837355 PICST_54635 Pichia stipitis CBS 6054 predicted protein XP_001382827.1 326079 R 322104 CDS PICST_87356 126132606 4836630 complement(326781..327464) 1 NC_009042.1 predicted protein 327464 4836630 PICST_87356 Pichia stipitis CBS 6054 predicted protein XP_001382828.1 326781 R 322104 CDS PICST_29464 150863728 4837478 328765..>330902 1 NC_009042.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; C2H2 zinc finger protein >330902 4837478 PICST_29464 Pichia stipitis CBS 6054 C2H2 zinc finger protein XP_001382294.2 328765 D 322104 CDS PICST_29465 150864123 4836783 complement(331038..332705) 1 NC_009042.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; Thiamine Metabolism 332705 THI7 4836783 THI7 Pichia stipitis CBS 6054 Thiamine Metabolism XP_001382829.2 331038 R 322104 CDS PICST_41374 126131540 4836786 333435..336386 1 NC_009042.1 go_function: hydrolase activity; predicted protein 336386 4836786 PICST_41374 Pichia stipitis CBS 6054 predicted protein XP_001382295.1 333435 D 322104 CDS PICST_29467 150864124 4837100 complement(337254..338312) 1 NC_009042.1 predicted protein 338312 4837100 PICST_29467 Pichia stipitis CBS 6054 predicted protein XP_001382830.2 337254 R 322104 CDS PICST_66803 150863729 4836799 join(339298..339627,339811..341056,341132..341823,341905..342474,342544..344045,344109..344751) 1 NC_009042.1 predicted protein 344751 4836799 PICST_66803 Pichia stipitis CBS 6054 predicted protein XP_001382296.2 339298 D 322104 CDS PICST_42452 150863730 4836960 345996..347006 1 NC_009042.1 NADPH-dependent cinnamyl-alcohol dehydrogenase.; dihydroflavonol-4-reductases 347006 GRP2.1 4836960 GRP2.1 Pichia stipitis CBS 6054 dihydroflavonol-4-reductases XP_001382297.2 345996 D 322104 CDS PICST_70551 150863731 4836963 347505..350429 1 NC_009042.1 predicted protein 350429 4836963 PICST_70551 Pichia stipitis CBS 6054 predicted protein XP_001382298.2 347505 D 322104 CDS PICST_54746 150863732 4836743 351462..352427 1 NC_009042.1 soluble epoxide hydrolase 352427 SEH2 4836743 SEH2 Pichia stipitis CBS 6054 soluble epoxide hydrolase XP_001382299.2 351462 D 322104 CDS PICST_29472 150864125 4836813 complement(join(353249..354675,354733..354775)) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; go_process: DNA repair; regulation of transcription; predicted protein 354775 4836813 PICST_29472 Pichia stipitis CBS 6054 predicted protein XP_001382831.2 353249 R 322104 CDS PICST_29473 150864126 4837293 complement(355197..356027) 1 NC_009042.1 go_function: zinc ion binding; hydrolase activity; predicted protein 356027 4837293 PICST_29473 Pichia stipitis CBS 6054 predicted protein XP_001382832.2 355197 R 322104 CDS PICST_42666 150863733 4837007 join(356719..356861,356931..357906) 1 NC_009042.1 predicted protein 357906 4837007 PICST_42666 Pichia stipitis CBS 6054 predicted protein XP_001382300.2 356719 D 322104 CDS PICST_40885 150864127 4836867 complement(358018..360159) 1 NC_009042.1 go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; NAD+ synthase (glutamine-hydrolyzing) activity; ATP binding; go_process: nitrogen compound metabolism; NAD biosynthesis; glutamine-dependent NAD(+) synthetase 360159 QNS1 4836867 QNS1 Pichia stipitis CBS 6054 glutamine-dependent NAD(+) synthetase XP_001382833.2 358018 R 322104 CDS PICST_34838 126131552 4836898 361096..362286 1 NC_009042.1 predicted protein 362286 4836898 PICST_34838 Pichia stipitis CBS 6054 predicted protein XP_001382301.1 361096 D 322104 CDS PICST_81508 150863734 4836687 join(362840..363544,363647..364605,364696..364996,365198..365539) 1 NC_009042.1 determined by homology; protein involved in plasmid maintenance, respiration and cell proliferation 365539 SMP2 4836687 SMP2 Pichia stipitis CBS 6054 protein involved in plasmid maintenance, respiration and cell proliferation XP_001382302.2 362840 D 322104 CDS PICST_55466 150863735 4836781 join(<366432..366761,367744..367756,369592..369923,369969..370700,370761..371040,371077..>371240) 1 NC_009042.1 predicted protein 371040 4836781 PICST_55466 Pichia stipitis CBS 6054 predicted protein XP_001382303.2 <366432 D 322104 CDS PICST_34839 150863736 4837308 373015..373761 1 NC_009042.1 predicted protein 373761 4837308 PICST_34839 Pichia stipitis CBS 6054 predicted protein XP_001382304.2 373015 D 322104 CDS PICST_54153 126131560 4837077 374243..375718 1 NC_009042.1 go_function: transaminase activity; 4-aminobutyrate aminotransferase (GABA transaminase) 375718 UGA1.1 4837077 UGA1.1 Pichia stipitis CBS 6054 4-aminobutyrate aminotransferase (GABA transaminase) XP_001382305.1 374243 D 322104 CDS PICST_41410 150863737 4837350 join(377511..378673,378728..379033,379130..380136,380227..>380519) 1 NC_009042.1 predicted protein 380136 4837350 PICST_41410 Pichia stipitis CBS 6054 predicted protein XP_001382306.2 377511 D 322104 CDS PICST_29483 150864128 4836706 complement(381226..383175) 1 NC_009042.1 predicted protein 383175 4836706 PICST_29483 Pichia stipitis CBS 6054 predicted protein XP_001382834.2 381226 R 322104 CDS PICST_40466 126131564 4837066 383627..383965 1 NC_009042.1 predicted protein 383965 4837066 PICST_40466 Pichia stipitis CBS 6054 predicted protein XP_001382307.1 383627 D 322104 CDS PICST_87040 150863738 4836723 385775..387349 1 NC_009042.1 Ferric reductase, NADH/NADPH oxidase and related proteins transmembrane component (6 domains); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; Ferric reductase, NADH/NADPH oxidase transmembrane component 387349 FRE3.1 4836723 FRE3.1 Pichia stipitis CBS 6054 Ferric reductase, NADH/NADPH oxidase transmembrane component XP_001382308.2 385775 D 322104 CDS PICST_29486 150863739 4836755 387794..388207 1 NC_009042.1 predicted protein 388207 4836755 PICST_29486 Pichia stipitis CBS 6054 predicted protein XP_001382309.2 387794 D 322104 CDS PICST_41858 150863740 4837607 join(389058..391070,391134..391322) 1 NC_009042.1 DNA polymerase eta subunit Radiation sensitive. Replication fork is protected from inaccurate synthesis by Pol eta in the absence of DNA damage; go_process: DNA repair; DNA polymerase eta subunit 391322 RAD30 4837607 RAD30 Pichia stipitis CBS 6054 DNA polymerase eta subunit XP_001382310.2 389058 D 322104 CDS PICST_81669 150864129 4836634 complement(join(391400..391768,391802..394126,394142..394534)) 1 NC_009042.1 Nonsense-mediated mRNA decay protein 2 (Up-frameshift suppressor 2); go_function: RNA binding; go_process: protein biosynthesis; protein involved in decay of mRNA containing nonsense codons 394534 NMD2 4836634 NMD2 Pichia stipitis CBS 6054 protein involved in decay of mRNA containing nonsense codons XP_001382835.2 391400 R 322104 CDS PICST_81718 150864130 4837245 complement(394887..396041) 1 NC_009042.1 ribosomal protein of the large subunit, mitochondrial; Mitochondrial ribosomal protein MRPL35 (YmL35) 396041 MRPL35 4837245 MRPL35 Pichia stipitis CBS 6054 Mitochondrial ribosomal protein MRPL35 (YmL35) XP_001382836.2 394887 R 322104 CDS PICST_40869 150864131 4837163 complement(join(396650..396774,396961..397142,397251..397402)) 1 NC_009042.1 predicted protein 397402 4837163 PICST_40869 Pichia stipitis CBS 6054 predicted protein XP_001382837.2 396650 R 322104 CDS PICST_66810 150864132 4836719 complement(join(399501..399769,399815..400190)) 1 NC_009042.1 go_component: nucleus; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 400190 4836719 PICST_66810 Pichia stipitis CBS 6054 predicted protein XP_001382838.2 399501 R 322104 CDS PICST_66811 150863741 4836718 401343..403331 1 NC_009042.1 predicted protein 403331 4836718 PICST_66811 Pichia stipitis CBS 6054 predicted protein XP_001382311.2 401343 D 322104 CDS PICST_82299 126131574 4836851 404296..404748 1 NC_009042.1 go_function: cytochrome-c oxidase activity; go_process: electron transport; subunit VI of cytochrome c oxidase 404748 COX6 4836851 COX6 Pichia stipitis CBS 6054 subunit VI of cytochrome c oxidase XP_001382312.1 404296 D 322104 CDS PICST_40521 126131576 4836728 <405730..>406671 1 NC_009042.1 predicted protein >406671 4836728 PICST_40521 Pichia stipitis CBS 6054 predicted protein XP_001382313.1 <405730 D 322104 CDS PICST_29495 126132628 4836850 complement(406979..408199) 1 NC_009042.1 predicted protein 408199 4836850 PICST_29495 Pichia stipitis CBS 6054 predicted protein XP_001382839.1 406979 R 322104 CDS PICST_66813 150864133 4837384 complement(408461..409417) 1 NC_009042.1 Cell wall protein DAN4 precursor 409417 DAN4 4837384 DAN4 Pichia stipitis CBS 6054 Cell wall protein DAN4 precursor XP_001382840.2 408461 R 322104 CDS PICST_70792 150864134 4837243 complement(410014..410928) 1 NC_009042.1 NuA4 histone acetyltransferase complex component; Yeast homolog of mammalian Ing1; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; Ing1-like protein 410928 YNG2 4837243 YNG2 Pichia stipitis CBS 6054 Ing1-like protein XP_001382841.2 410014 R 322104 CDS PICST_29498 150863742 4836756 411172..413658 1 NC_009042.1 required for mother cell-specific gene expression; protein required for mother cell-specific HO expression 413658 SHE4 4836756 SHE4 Pichia stipitis CBS 6054 protein required for mother cell-specific HO expression XP_001382314.2 411172 D 322104 CDS PICST_81443 150864135 4836733 complement(join(413682..415583,415602..416357,416442..416603)) 1 NC_009042.1 SED5-binding protein 3 (SEC24-related protein 3) (Lethal with SEC13 protein 1); go_function: protein binding; sec-24-like membrane protein involved in ER to Golgi vesicular transport 416603 SFB3 4836733 SFB3 Pichia stipitis CBS 6054 sec-24-like membrane protein involved in ER to Golgi vesicular transport XP_001382842.2 413682 R 322104 CDS PICST_56077 150863743 4837203 join(417764..417875,417921..418930,419009..419584) 1 NC_009042.1 transmembrane protein 419584 PAL2 4837203 PAL2 Pichia stipitis CBS 6054 transmembrane protein XP_001382315.2 417764 D 322104 CDS PICST_54293 150863744 4837648 420098..422350 1 NC_009042.1 heat shock
protein of clpb family of
ATP-dependent proteases; Heat shock protein 78, mitochondrial precursor HSP78 422350 HSP78 4837648 HSP78 Pichia stipitis CBS 6054 Heat shock protein 78, mitochondrial precursor HSP78 XP_001382316.2 420098 D 322104 CDS PICST_55255 150864136 4837591 complement(join(422526..422882,422988..426659,426730,426751..426842)) 1 NC_009042.1 PAN1; Involved in actin organization and endocytosis; go_function: calcium ion binding; protein involved in actin organization and endocytosis 426842 PAN1 4837591 PAN1 Pichia stipitis CBS 6054 protein involved in actin organization and endocytosis XP_001382843.2 422526 R 322104 CDS PICST_70077 126132638 4837639 complement(427483..429234) 1 NC_009042.1 thiamine biosynthesis; transcribed in the presence of low level of thiamine (10-8M) and turned off in the presence of high level (10-6M) of thiamine. Under the positive control of THI2 and THI3.; Phosphomethylpyrimidine kinase THI21 (HMP-phosphate kinase) (HMP-P kinase) 429234 THI20 4837639 THI20 Pichia stipitis CBS 6054 Phosphomethylpyrimidine kinase THI21 (HMP-phosphate kinase) (HMP-P kinase) XP_001382844.1 427483 R 322104 CDS PICST_40926 150864137 4837217 complement(429640..431946) 1 NC_009042.1 go_function: deaminase activity; go_process: purine ribonucleoside monophosphate biosynthesis; AMP deaminase 431946 AMD1 4837217 AMD1 Pichia stipitis CBS 6054 AMP deaminase XP_001382845.2 429640 R 322104 CDS PICST_66818 150864138 4837325 complement(432631..434361) 1 NC_009042.1 hypothetical protein 434361 4837325 PICST_66818 Pichia stipitis CBS 6054 hypothetical protein XP_001382846.2 432631 R 322104 CDS PICST_34848 150864139 4836761 complement(join(435200..435342,435400..437215)) 1 NC_009042.1 predicted protein 437215 4836761 PICST_34848 Pichia stipitis CBS 6054 predicted protein XP_001382847.2 435200 R 322104 CDS PICST_54431 150864140 4837018 complement(437508..438665) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 438665 4837018 PICST_54431 Pichia stipitis CBS 6054 predicted protein XP_001382848.2 437508 R 322104 CDS PICST_70212 150863745 4837213 440748..442097 1 NC_009042.1 amino acid transporter; related to the neuronal gamma-aminobutyric acid-glycine vesicular transporters; go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; Vacuolar amino acid transporter 7 442097 AVT7 4837213 AVT7 Pichia stipitis CBS 6054 Vacuolar amino acid transporter 7 XP_001382317.2 440748 D 322104 CDS PICST_34851 150863746 4837240 442504..443268 1 NC_009042.1 predicted protein 443268 4837240 PICST_34851 Pichia stipitis CBS 6054 predicted protein XP_001382318.2 442504 D 322104 CDS PICST_70394 126131588 4837638 444422..445168 1 NC_009042.1 converts 3-phosphoglycerate to 2-phosphoglycerate in glycolysis; go_function: catalytic activity; go_process: metabolism; phosphoglycerate mutase 445168 GPM1.1 4837638 GPM1.1 Pichia stipitis CBS 6054 phosphoglycerate mutase XP_001382319.1 444422 D 322104 CDS PICST_88123 150863747 4837117 join(445981..446893,446954..447085,447119..448257) 1 NC_009042.1 go_component: nuclear pore; go_function: structural constituent of nuclear pore; Nucleoporin NSP1 (Nuclear pore protein NSP1) (Nucleoskeletal-like protein) (p110) 448257 NSP1 4837117 NSP1 Pichia stipitis CBS 6054 Nucleoporin NSP1 (Nuclear pore protein NSP1) (Nucleoskeletal-like protein) (p110) XP_001382320.2 445981 D 322104 CDS PICST_76547 150863748 4836860 449082..449945 1 NC_009042.1 predicted protein 449945 4836860 PICST_76547 Pichia stipitis CBS 6054 predicted protein XP_001382321.2 449082 D 322104 CDS PICST_54024 150863749 4837367 450326..451348 1 NC_009042.1 go_function: porphobilinogen synthase activity; go_process: heme biosynthesis; predicted protein 451348 4837367 PICST_54024 Pichia stipitis CBS 6054 predicted protein XP_001382322.2 450326 D 322104 CDS PICST_29516 150864141 4836919 complement(451650..452294) 1 NC_009042.1 go_function: molecular function unknown; predicted protein 452294 4836919 PICST_29516 Pichia stipitis CBS 6054 predicted protein XP_001382849.2 451650 R 322104 CDS PICST_42612 126131596 4837339 join(456561..456863,457071..459458) 1 NC_009042.1 high copy suppressor of cik1 and kar3 deletion mutants; go_function: small GTPase regulator activity; go_process: intracellular signaling cascade; Gdp-GTP Exchange Protein (GEP) for the Rho1p Small GTP-binding Protein 459458 ROM2 4837339 ROM2 Pichia stipitis CBS 6054 Gdp-GTP Exchange Protein (GEP) for the Rho1p Small GTP-binding Protein XP_001382323.1 456561 D 322104 CDS PICST_20287 150863750 4836694 <460275..>461207 1 NC_009042.1 go_component: integral to membrane; predicted protein >461207 4836694 PICST_20287 Pichia stipitis CBS 6054 predicted protein XP_001382324.2 <460275 D 322104 CDS PICST_66824 150863751 4836658 463636..464727 1 NC_009042.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; tRNA splicing, uptake of branched- chain amino acids 464727 STP4 4836658 STP4 Pichia stipitis CBS 6054 tRNA splicing, uptake of branched- chain amino acids XP_001382325.2 463636 D 322104 CDS PICST_34859 126131602 4836931 466737..467447 1 NC_009042.1 predicted protein 467447 4836931 PICST_34859 Pichia stipitis CBS 6054 predicted protein XP_001382326.1 466737 D 322104 CDS PICST_81688 150864142 4837043 complement(join(467670..473909,473943..477509)) 1 NC_009042.1 E3 ubiqitin ligase required for G2/M transition; go_component: intracellular; go_function: ubiquitin-protein ligase activity; go_process: protein modification; ubiquitin cycle; E3 ubiquitin protein ligase TOM1 (Temperature dependent-organization in mitotic nucleus protein 1) 477509 TOM12 4837043 TOM12 Pichia stipitis CBS 6054 E3 ubiquitin protein ligase TOM1 (Temperature dependent-organization in mitotic nucleus protein 1) XP_001382850.2 467670 R 322104 CDS PICST_29522 150863752 4837215 478194..479615 1 NC_009042.1 predicted protein 479615 4837215 PICST_29522 Pichia stipitis CBS 6054 predicted protein XP_001382327.2 478194 D 322104 CDS PICST_75662 126131606 4836834 481715..484300 1 NC_009042.1 go_component: ribonucleoside-diphosphate reductase complex; go_function: ribonucleoside-diphosphate reductase activity; go_process: DNA replication; Ribonucleoside-diphosphate reductase large chain 1 484300 RNR1.2 4836834 RNR1.2 Pichia stipitis CBS 6054 Ribonucleoside-diphosphate reductase large chain 1 XP_001382328.1 481715 D 322104 CDS PICST_29524 150863753 4837592 484829..487021 1 NC_009042.1 predicted protein 487021 4837592 PICST_29524 Pichia stipitis CBS 6054 predicted protein XP_001382329.2 484829 D 322104 CDS PICST_29525 150863754 4837547 487416..489737 1 NC_009042.1 go_function: metal ion binding; predicted protein 489737 4837547 PICST_29525 Pichia stipitis CBS 6054 predicted protein XP_001382330.2 487416 D 322104 CDS PICST_76584 126132652 4837594 complement(489808..490431) 1 NC_009042.1 predicted protein 490431 4837594 PICST_76584 Pichia stipitis CBS 6054 predicted protein XP_001382851.1 489808 R 322104 CDS PICST_55523 150864143 4837005 complement(490720..492864) 1 NC_009042.1 go_function: copper ion binding; peroxisomal copper amine oxidase 492864 AMO1 4837005 AMO1 Pichia stipitis CBS 6054 peroxisomal copper amine oxidase XP_001382852.2 490720 R 322104 CDS PICST_29528 150864144 4837205 complement(493868..495139) 1 NC_009042.1 predicted protein 495139 4837205 PICST_29528 Pichia stipitis CBS 6054 predicted protein XP_001382853.2 493868 R 322104 CDS PICST_66828 126132658 4837377 complement(join(496725..499249,499622..499625)) 1 NC_009042.1 Elongation factor (EF2); go_function: GTP binding; translation elongation factor activity; go_process: protein biosynthesis; translational elongation; Elongation factor 499625 EFT2 4837377 EFT2 Pichia stipitis CBS 6054 Elongation factor XP_001382854.1 496725 R 322104 CDS PICST_34864 126131612 4837029 500673..501428 1 NC_009042.1 go_function: hydroxymethyl-, formyl- and related transferase activity; go_process: biosynthesis; Phosphoribosylglycinamide formyltransferase (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) 501428 PUR3 4837029 PUR3 Pichia stipitis CBS 6054 Phosphoribosylglycinamide formyltransferase (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) XP_001382331.1 500673 D 322104 CDS PICST_42313 126132660 4837425 complement(501874..502977) 1 NC_009042.1 go_function: oxidoreductase activity; go_process: metabolism; mitochondrial isocitrate dehydrogenase (NAD+) subunit 2 502977 IDH2 4837425 IDH2 Pichia stipitis CBS 6054 mitochondrial isocitrate dehydrogenase (NAD+) subunit 2 XP_001382855.1 501874 R 322104 CDS PICST_54201 150863755 4836848 join(504742..505784,505815..505940,505962..506028,506056..506343) 1 NC_009042.1 Involved in glycosyl phosphatidyl inositol synthesis most likely an alpha 1,2 mannosyltransferase utilized for addition of the fourth, side-branching mannose onto the GPI core structure.; alpha 1,2 mannosyltransferase 506343 SMP3 4836848 SMP3 Pichia stipitis CBS 6054 alpha 1,2 mannosyltransferase XP_001382332.2 504742 D 322104 CDS PICST_66830 126132662 4837078 complement(506450..507682) 1 NC_009042.1 go_function: ATP binding; 26S proteasome regulatory subunit 507682 RPT3 4837078 RPT3 Pichia stipitis CBS 6054 26S proteasome regulatory subunit XP_001382856.1 506450 R 322104 CDS PICST_54978 150864145 4837025 complement(join(508364..509406,509449..509578,509648..>509713)) 1 NC_009042.1 predicted protein 509578 4837025 PICST_54978 Pichia stipitis CBS 6054 predicted protein XP_001382857.2 508364 R 322104 CDS PICST_70308 126132666 4837004 complement(510169..511062) 1 NC_009042.1 go_function: phospholipase C activity; go_process: signal transduction; intracellular signaling cascade; predicted protein 511062 4837004 PICST_70308 Pichia stipitis CBS 6054 predicted protein XP_001382858.1 510169 R 322104 CDS PICST_65135 150864146 4837002 complement(join(511815..512470,512540..513392)) 1 NC_009042.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; hexose transporter of the major facilitator superfamily 513392 YBR2 4837002 YBR2 Pichia stipitis CBS 6054 hexose transporter of the major facilitator superfamily XP_001382859.2 511815 R 322104 CDS PICST_81859 150864147 4837413 complement(join(514266..514560,514573..516656,516681..517121)) 1 NC_009042.1 go_component: intracellular; go_function: DNA ligase (ATP) activity; ATP binding; go_process: DNA replication; DNA repair; DNA recombination; DNA ligase IV 517121 DNL1 4837413 DNL1 Pichia stipitis CBS 6054 DNA ligase IV XP_001382860.2 514266 R 322104 CDS PICST_55521 150863756 4836637 join(519753..520756,520796..>521483) 1 NC_009042.1 predicted protein 520756 4836637 PICST_55521 Pichia stipitis CBS 6054 predicted protein XP_001382333.2 519753 D 322104 CDS PICST_70259 150863757 4837094 523089..524342 1 NC_009042.1 go_function: ribonucleoside-diphosphate reductase activity; go_process: deoxyribonucleoside diphosphate metabolism; small subunit of ribonucleotide reductase 524342 RNR2 4837094 RNR2 Pichia stipitis CBS 6054 small subunit of ribonucleotide reductase XP_001382334.2 523089 D 322104 CDS PICST_81457 126131620 4836937 join(524854..525567,525697..525805,525869..525975) 1 NC_009042.1 predicted protein 525975 4836937 PICST_81457 Pichia stipitis CBS 6054 predicted protein XP_001382335.1 524854 D 322104 CDS PICST_81320 150863758 4836839 526553..530482 1 NC_009042.1 go_function: hydrolase activity; catalytic activity; 5-oxoprolinase 530482 HYU1.1 4836839 HYU1.1 Pichia stipitis CBS 6054 5-oxoprolinase XP_001382336.2 526553 D 322104 CDS PICST_55861 150863759 4837531 join(530938..534147,534232..534606) 1 NC_009042.1 predicted protein 534606 4837531 PICST_55861 Pichia stipitis CBS 6054 predicted protein XP_001382337.2 530938 D 322104 CDS PICST_54655 126131626 4837118 <536533..537414 1 NC_009042.1 predicted protein 537414 4837118 PICST_54655 Pichia stipitis CBS 6054 predicted protein XP_001382338.1 <536533 D 322104 CDS PICST_13665 150863760 4837312 <537981..>538364 1 NC_009042.1 Negative Cofactor B2 is the beta subunit of a negative regulator of RNA polymerase II holoenzyme. It is homologous to the Dr1 subunit of the mammalian NC2 (negative cofactor2); go_function: DNA binding; Class 2 transcription repressor NC2, beta subunit (Dr1) >538364 NCB2 4837312 NCB2 Pichia stipitis CBS 6054 Class 2 transcription repressor NC2, beta subunit (Dr1) XP_001382339.2 <537981 D 322104 CDS PICST_55751 126132672 4837321 complement(538857..539141) 1 NC_009042.1 predicted protein 539141 4837321 PICST_55751 Pichia stipitis CBS 6054 predicted protein XP_001382861.1 538857 R 322104 CDS PICST_41673 126131630 4837329 539728..540690 1 NC_009042.1 predicted protein 540690 4837329 PICST_41673 Pichia stipitis CBS 6054 predicted protein XP_001382340.1 539728 D 322104 CDS PICST_42021 150864148 4837189 complement(540849..>542450) 1 NC_009042.1 predicted protein >542450 4837189 PICST_42021 Pichia stipitis CBS 6054 predicted protein XP_001382862.2 540849 R 322104 CDS PICST_42658 150864149 4837392 complement(543302..546091) 1 NC_009042.1 Required for efficient translocation of protein precursors across the ER membrane; Lumen HSP Seventy 546091 LHS1 4837392 LHS1 Pichia stipitis CBS 6054 Lumen HSP Seventy XP_001382863.2 543302 R 322104 CDS PICST_66841 150863761 4837634 547711..548364 1 NC_009042.1 hypoxanthine guanine phosphoribosyltransferase;Xanthine Phosphoribosyl Transferase (XPT); hypoxanthine guanine phosphoribosyltransferase 548364 HPT1 4837634 HPT1 Pichia stipitis CBS 6054 hypoxanthine guanine phosphoribosyltransferase XP_001382341.2 547711 D 322104 CDS PICST_66842 150864150 4837422 complement(548625..550196) 1 NC_009042.1 Monocarboxylate transporter 550196 MCH2.3 4837422 MCH2.3 Pichia stipitis CBS 6054 Monocarboxylate transporter XP_001382864.2 548625 R 322104 CDS PICST_87707 150864151 4837398 complement(551048..552136) 1 NC_009042.1 ubiquitin-dependent protein catabolism; go_process: ubiquitin-dependent protein catabolism; ubiquitin fusion degradation protein I 552136 UFD1 4837398 UFD1 Pichia stipitis CBS 6054 ubiquitin fusion degradation protein I XP_001382865.2 551048 R 322104 CDS PICST_69889 150864152 4837024 complement(552593..555607) 1 NC_009042.1 Suppressor of mRNA export mutant; go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; Importin-beta like gene 555607 SMX1 4837024 SMX1 Pichia stipitis CBS 6054 Importin-beta like gene XP_001382866.2 552593 R 322104 CDS PICST_55810 150863762 4837400 556614..557489 1 NC_009042.1 involved in pre-rRNA processing and ribosome assembly; Ribosomal RNA processing protein 7 557489 RRP7 4837400 RRP7 Pichia stipitis CBS 6054 Ribosomal RNA processing protein 7 XP_001382342.2 556614 D 322104 CDS PICST_42028 126131636 4837654 557766..558650 1 NC_009042.1 related to various bacterial aminotransferases; para-AminoBenZoic acid (PABA) biosynthesis. Third enzymatic step in para-Aminobenzoic acid biosynthesis; aminotransferase-like protein 558650 ABZ2 4837654 ABZ2 Pichia stipitis CBS 6054 aminotransferase-like protein XP_001382343.1 557766 D 322104 CDS PICST_40365 150864153 4837096 complement(558749..559669) 1 NC_009042.1 Phosphoserine phosphatase (PSP) (O-phosphoserine phosphohydrolase) (PSPase); go_function: catalytic activity; go_process: metabolism; phosphoserine phosphatase activity 559669 PSP1 4837096 PSP1 Pichia stipitis CBS 6054 phosphoserine phosphatase activity XP_001382867.2 558749 R 322104 CDS PICST_55621 126131638 4837399 560784..561989 1 NC_009042.1 NAPDH dehydrogenase (old yellow enzyme) (EPB7) (OYE22); go_function: oxidoreductase activity; go_process: electron transport; NAPDH dehydrogenase (old yellow enzyme) 561989 OYE2.3 4837399 OYE2.3 Pichia stipitis CBS 6054 NAPDH dehydrogenase (old yellow enzyme) XP_001382344.1 560784 D 322104 CDS PICST_66845 150864154 4836855 complement(562078..563160) 1 NC_009042.1 involved in pleiotropic drug resistance by controlling lipids in various cellular compartments; positively regulated by PDR1; putative phosphatidylinositol transfer protein; lipid biosynthesis and multidrug resistance 563160 PDR17 4836855 PDR17 Pichia stipitis CBS 6054 lipid biosynthesis and multidrug resistance XP_001382868.2 562078 R 322104 CDS PICST_29560 150863763 4836703 564213..565094 1 NC_009042.1 predicted protein 565094 4836703 PICST_29560 Pichia stipitis CBS 6054 predicted protein XP_001382345.2 564213 D 322104 CDS PICST_56294 150864155 4836675 complement(join(565124..565680,565711..>565912)) 1 NC_009042.1 predicted protein 565680 4836675 PICST_56294 Pichia stipitis CBS 6054 predicted protein XP_001382869.2 565124 R 322104 CDS PICST_18667 150863764 4837406 join(566978..567393,567457..567473,567519..568252,568271..>568315) 1 NC_009042.1 RNA polymerase I specific transcription initiation factor RRN7 568252 RRN7 4837406 RRN7 Pichia stipitis CBS 6054 RNA polymerase I specific transcription initiation factor RRN7 XP_001382346.2 566978 D 322104 CDS PICST_29563 126131644 4837252 570211..571698 1 NC_009042.1 aldehyde dehydrogenase some similarity to glyceraldehyde-3-phosphate dehydrogenase (GAPN); go_function: oxidoreductase activity; go_process: metabolism; Aldehyde dehydrogenase 571698 ALD5 4837252 ALD5 Pichia stipitis CBS 6054 Aldehyde dehydrogenase XP_001382347.1 570211 D 322104 CDS PICST_87922 126131646 4837255 join(572921..572923,573466..573870) 1 NC_009042.1 40S ribosomal protein S24 (RP50); go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein S24 573870 RPS24 4837255 RPS24 Pichia stipitis CBS 6054 ribosomal protein S24 XP_001382348.1 572921 D 322104 CDS PICST_21982 150863765 4837593 join(574445..574780,574817..>575029) 1 NC_009042.1 predicted protein 574780 4837593 PICST_21982 Pichia stipitis CBS 6054 predicted protein XP_001382349.2 574445 D 322104 CDS PICST_55973 150864156 4836758 complement(join(575625..577033,577082..578150)) 1 NC_009042.1 cytoplasmic protein involved in fusion of post-Golgi vesicles with the plasma membrane. The Exocyst complex is required for exocytosis; exocyst complex subunit 578150 SEC6 4836758 SEC6 Pichia stipitis CBS 6054 exocyst complex subunit XP_001382870.2 575625 R 322104 CDS PICST_3504 150864157 4837030 complement(join(<578626..578957,579051..579890,580095..580555,580637..>580914)) 1 NC_009042.1 poly(A)-binding protein binding protein 580555 PBP1 4837030 PBP1 Pichia stipitis CBS 6054 poly(A)-binding protein binding protein XP_001382871.2 <578626 R 322104 CDS PICST_54750 150864158 4837412 complement(join(583039..583250,583281..584349,584362..584495,584592..584657,584811..>585084)) 1 NC_009042.1 predicted protein 584657 4837412 PICST_54750 Pichia stipitis CBS 6054 predicted protein XP_001382872.2 583039 R 322104 CDS PICST_27939 126131650 4836993 585391..>585570 1 NC_009042.1 predicted protein >585570 4836993 PICST_27939 Pichia stipitis CBS 6054 predicted protein XP_001382350.1 585391 D 322104 CDS PICST_82046 126132696 4837095 complement(585965..586312) 1 NC_009042.1 Vacuolar transporter chaperone 1 (Phosphate metabolism protein 4) (Negative regulator of CDC42 protein 1) 586312 VTC1 4837095 VTC1 Pichia stipitis CBS 6054 Vacuolar transporter chaperone 1 (Phosphate metabolism protein 4) (Negative regulator of CDC42 protein 1) XP_001382873.1 585965 R 322104 CDS PICST_29570 150863766 4836668 588077..589405 1 NC_009042.1 hypothetical protein 589405 4836668 PICST_29570 Pichia stipitis CBS 6054 hypothetical protein XP_001382351.2 588077 D 322104 CDS PICST_34891 150864159 4836964 complement(join(589621..590759,590925..591525)) 1 NC_009042.1 probable Allantoinase similarity to bacterial genes; go_function: hydrolase activity; Allantoinase 591525 ALN1 4836964 ALN1 Pichia stipitis CBS 6054 Allantoinase XP_001382874.2 589621 R 322104 CDS PICST_34892 126132700 4836725 complement(592351..593451) 1 NC_009042.1 trans-2-enoyl-CoA reductase 2, mitochondrial precursor (Yong-Su Jin[2006-01-06 12:05:17]); go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; mitochondrial trans-2-enoyl-CoA reductase 2 593451 ETR2 4836725 ETR2 Pichia stipitis CBS 6054 mitochondrial trans-2-enoyl-CoA reductase 2 XP_001382875.1 592351 R 322104 CDS PICST_29573 126132702 4837276 complement(594209..594877) 1 NC_009042.1 predicted protein 594877 4837276 PICST_29573 Pichia stipitis CBS 6054 predicted protein XP_001382876.1 594209 R 322104 CDS PICST_87108 126131654 4836720 599031..600938 1 NC_009042.1 Arabinose-proton symporter (Arabinose transporter) [Klebsiella aerogenes] (ARAE); go_component: integral to membrane; go_function: transporter activity; go_process: transport; Arabinose-proton symporter (Arabinose transporter) 600938 AUT1 4836720 AUT1 Pichia stipitis CBS 6054 Arabinose-proton symporter (Arabinose transporter) XP_001382352.1 599031 D 322104 CDS PICST_65149 150864160 4836657 complement(601822..603243) 1 NC_009042.1 Zinc-finger-containing protein with similarity to Gcs1p and Sps18p; go_component: nucleus; go_function: DNA binding; GTP-ase activating protein for Arf 603243 GLO3 4836657 GLO3 Pichia stipitis CBS 6054 GTP-ase activating protein for Arf XP_001382877.2 601822 R 322104 CDS PICST_40652 150864161 4836772 complement(604215..605507) 1 NC_009042.1 go_component: mitochondrial inner membrane presequence translocase complex; go_function: protein translocase activity; go_process: intracellular protein transport; predicted protein 605507 4836772 PICST_40652 Pichia stipitis CBS 6054 predicted protein XP_001382878.2 604215 R 322104 CDS PICST_40545 150864162 4836628 complement(606133..607569) 1 NC_009042.1 go_function: monooxygenase activity; go_process: aromatic compound metabolism; kynurenine 3-monooxygenase, mitochondrial precursor (Biosynthesis of nicotinic acid protein 4) 607569 BNA4 4836628 BNA4 Pichia stipitis CBS 6054 kynurenine 3-monooxygenase, mitochondrial precursor (Biosynthesis of nicotinic acid protein 4) XP_001382879.2 606133 R 322104 CDS PICST_25321 150864163 4837159 complement(<607936..609480) 1 NC_009042.1 predicted protein 609480 4837159 PICST_25321 Pichia stipitis CBS 6054 predicted protein XP_001382880.2 <607936 R 322104 CDS PICST_29579 150864164 4837158 complement(610014..613070) 1 NC_009042.1 go_function: cysteine-type peptidase activity; go_process: proteolysis and peptidolysis; predicted protein 613070 4837158 PICST_29579 Pichia stipitis CBS 6054 predicted protein XP_001382881.2 610014 R 322104 CDS PICST_54032 126131656 4837156 613838..615142 1 NC_009042.1 TAT-binding homolog 5; go_function: ATP binding; 26S protease regulatory subunit 4-like protein 615142 PRS4 4837156 PRS4 Pichia stipitis CBS 6054 26S protease regulatory subunit 4-like protein XP_001382353.1 613838 D 322104 CDS PICST_29581 150863767 4837102 615524..617065 1 NC_009042.1 predicted protein 617065 4837102 PICST_29581 Pichia stipitis CBS 6054 predicted protein XP_001382354.2 615524 D 322104 CDS PICST_54919 126132714 4837609 complement(<617524..617913) 1 NC_009042.1 predicted protein 617913 4837609 PICST_54919 Pichia stipitis CBS 6054 predicted protein XP_001382882.1 <617524 R 322104 CDS PICST_42440 126131660 4836794 619499..620260 1 NC_009042.1 go_function: catalytic activity; go_process: metabolism; DL-glycerol-3-phosphatase 620260 GPP1 4836794 GPP1 Pichia stipitis CBS 6054 DL-glycerol-3-phosphatase XP_001382355.1 619499 D 322104 CDS PICST_42671 126131662 4836881 <622695..>623459 1 NC_009042.1 predicted protein >623459 4836881 PICST_42671 Pichia stipitis CBS 6054 predicted protein XP_001382356.1 <622695 D 322104 CDS PICST_55121 150863768 4836714 623484..624089 1 NC_009042.1 predicted protein 624089 4836714 PICST_55121 Pichia stipitis CBS 6054 predicted protein XP_001382357.2 623484 D 322104 CDS PICST_82388 150863769 4837539 join(626022..626970,626992..628244) 1 NC_009042.1 predicted protein 628244 4837539 PICST_82388 Pichia stipitis CBS 6054 predicted protein XP_001382358.2 626022 D 322104 CDS PICST_76234 126131668 4837544 628497..628862 1 NC_009042.1 go_component: mitochondrial inner membrane; go_function: oxidoreductase activity, acting on NADH or NADPH; go_process: electron transport; predicted protein 628862 4837544 PICST_76234 Pichia stipitis CBS 6054 predicted protein XP_001382359.1 628497 D 322104 CDS PICST_56016 126131670 4837368 629155..629784 1 NC_009042.1 go_function: transferase activity, transferring phosphorus-containing groups; go_process: tRNA splicing; predicted protein 629784 4837368 PICST_56016 Pichia stipitis CBS 6054 predicted protein XP_001382360.1 629155 D 322104 CDS PICST_29587 150863770 4837488 631618..632403 1 NC_009042.1 predicted protein 632403 4837488 PICST_29587 Pichia stipitis CBS 6054 predicted protein XP_001382361.2 631618 D 322104 CDS PICST_29588 150864165 4837034 complement(633139..633789) 1 NC_009042.1 predicted protein 633789 4837034 PICST_29588 Pichia stipitis CBS 6054 predicted protein XP_001382883.2 633139 R 322104 CDS PICST_42423 150864166 4837459 complement(join(633953..635555,635718..636295)) 1 NC_009042.1 predicted protein 636295 4837459 PICST_42423 Pichia stipitis CBS 6054 predicted protein XP_001382884.2 633953 R 322104 CDS PICST_29591 150864167 4837204 complement(641620..642693) 1 NC_009042.1 predicted protein 642693 4837204 PICST_29591 Pichia stipitis CBS 6054 predicted protein XP_001382885.2 641620 R 322104 CDS PICST_42412 150863771 4836906 643689..644600 1 NC_009042.1 go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; predicted protein 644600 4836906 PICST_42412 Pichia stipitis CBS 6054 predicted protein XP_001382362.2 643689 D 322104 CDS PICST_40606 150864168 4836747 complement(join(<645303..645877,645944..>647900)) 1 NC_009042.1 go_function: catalytic activity; nutrient reservoir activity; predicted protein 645877 4836747 PICST_40606 Pichia stipitis CBS 6054 predicted protein XP_001382886.2 <645303 R 322104 CDS PICST_65151 150863772 4836697 649199..651814 1 NC_009042.1 predicted protein 651814 4836697 PICST_65151 Pichia stipitis CBS 6054 predicted protein XP_001382363.2 649199 D 322104 CDS PICST_55452 150863773 4836938 652915..653502 1 NC_009042.1 predicted protein 653502 4836938 PICST_55452 Pichia stipitis CBS 6054 predicted protein XP_001382364.2 652915 D 322104 CDS PICST_29596 126131680 4836764 653766..654329 1 NC_009042.1 predicted protein 654329 4836764 PICST_29596 Pichia stipitis CBS 6054 predicted protein XP_001382365.1 653766 D 322104 CDS PICST_55828 150864169 4836870 complement(654473..655567) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 655567 4836870 PICST_55828 Pichia stipitis CBS 6054 predicted protein XP_001382887.2 654473 R 322104 CDS PICST_81978 126131682 4836651 656097..656714 1 NC_009042.1 go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; F1F0-ATPase subunit 656714 ATP5 4836651 ATP5 Pichia stipitis CBS 6054 F1F0-ATPase subunit XP_001382366.1 656097 D 322104 CDS PICST_42196 150863774 4836695 join(657439..657693,657742..658923) 1 NC_009042.1 predicted protein 658923 4836695 PICST_42196 Pichia stipitis CBS 6054 predicted protein XP_001382367.2 657439 D 322104 CDS PICST_8389 150864170 4837229 complement(<659204..659767) 1 NC_009042.1 predicted protein 659767 4837229 PICST_8389 Pichia stipitis CBS 6054 predicted protein XP_001382888.2 <659204 R 322104 CDS PICST_82300 150863775 4837154 661071..662621 1 NC_009042.1 predicted protein 662621 4837154 PICST_82300 Pichia stipitis CBS 6054 predicted protein XP_001382368.2 661071 D 322104 CDS PICST_56432 150864171 4837226 complement(join(662896..663988,664010..664140)) 1 NC_009042.1 predicted protein 664140 4837226 PICST_56432 Pichia stipitis CBS 6054 predicted protein XP_001382889.2 662896 R 322104 CDS PICST_29603 150863776 4837580 664807..665715 1 NC_009042.1 predicted protein 665715 4837580 PICST_29603 Pichia stipitis CBS 6054 predicted protein XP_001382369.2 664807 D 322104 CDS PICST_40298 126131690 4836840 666147..666731 1 NC_009042.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 666731 4836840 PICST_40298 Pichia stipitis CBS 6054 predicted protein XP_001382370.1 666147 D 322104 CDS PICST_76411 150864172 4836636 complement(666933..668507) 1 NC_009042.1 protein with possible role during mitosis 668507 PAC1 4836636 PAC1 Pichia stipitis CBS 6054 protein with possible role during mitosis XP_001382890.2 666933 R 322104 CDS PICST_54814 150864173 4837218 complement(669189..669983) 1 NC_009042.1 go_function: molecular function unknown; predicted protein 669983 4837218 PICST_54814 Pichia stipitis CBS 6054 predicted protein XP_001382891.2 669189 R 322104 CDS PICST_82367 150864174 4837085 complement(join(670353..670967,671013..672325,672359..672554)) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Hygromycin Resistance Kinase 672554 HRK1 4837085 HRK1 Pichia stipitis CBS 6054 Hygromycin Resistance Kinase XP_001382892.2 670353 R 322104 CDS PICST_82025 150864175 4837009 complement(675135..676517) 1 NC_009042.1 predicted protein 676517 4837009 PICST_82025 Pichia stipitis CBS 6054 predicted protein XP_001382893.2 675135 R 322104 CDS PICST_81784 150864176 4836830 complement(677490..>678005) 1 NC_009042.1 predicted protein >678005 4836830 PICST_81784 Pichia stipitis CBS 6054 predicted protein XP_001382894.2 677490 R 322104 CDS PICST_29610 150864177 4837206 complement(681155..683047) 1 NC_009042.1 predicted protein 683047 4837206 PICST_29610 Pichia stipitis CBS 6054 predicted protein XP_001382895.2 681155 R 322104 CDS PICST_55332 150863777 4837068 join(<683678..683840,683859..684770,684858..685075) 1 NC_009042.1 predicted protein 685075 4837068 PICST_55332 Pichia stipitis CBS 6054 predicted protein XP_001382371.2 <683678 D 322104 CDS PICST_55226 150864178 4837418 complement(join(685358..686109,686149..686503)) 1 NC_009042.1 go_function: phosphatase activator activity; predicted protein 686503 4837418 PICST_55226 Pichia stipitis CBS 6054 predicted protein XP_001382896.2 685358 R 322104 CDS PICST_41519 150863778 4837140 687956..688750 1 NC_009042.1 diacylglycerol pyrophosphate phosphatase 688750 DPP2 4837140 DPP2 Pichia stipitis CBS 6054 diacylglycerol pyrophosphate phosphatase XP_001382372.2 687956 D 322104 CDS PICST_65158 126132744 4836817 complement(689321..690478) 1 NC_009042.1 S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase); go_function: methionine adenosyltransferase activity; ATP binding; go_process: one-carbon compound metabolism; S- adenosylmethionine synthetase 690478 SAM2 4836817 SAM2 Pichia stipitis CBS 6054 S- adenosylmethionine synthetase XP_001382897.1 689321 R 322104 CDS PICST_34921 150863779 4837397 join(691784..691871,691959..692156,692334..695557) 1 NC_009042.1 predicted protein 695557 4837397 PICST_34921 Pichia stipitis CBS 6054 predicted protein XP_001382373.2 691784 D 322104 CDS PICST_66860 150864179 4837495 complement(join(695800..695814,695889..697934)) 1 NC_009042.1 predicted protein 697934 4837495 PICST_66860 Pichia stipitis CBS 6054 predicted protein XP_001382898.2 695800 R 322104 CDS PICST_40963 126132748 4837211 complement(699499..700569) 1 NC_009042.1 go_function: nucleic acid binding; predicted protein 700569 4837211 PICST_40963 Pichia stipitis CBS 6054 predicted protein XP_001382899.1 699499 R 322104 CDS PICST_29618 150863780 4837389 700842..701180 1 NC_009042.1 predicted protein 701180 4837389 PICST_29618 Pichia stipitis CBS 6054 predicted protein XP_001382374.2 700842 D 322104 CDS PICST_76263 150863781 4837489 join(704853..706350,706414..707988,708025..708779) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 708779 4837489 PICST_76263 Pichia stipitis CBS 6054 predicted protein XP_001382375.2 704853 D 322104 CDS PICST_29620 150864180 4836698 complement(709003..709794) 1 NC_009042.1 predicted protein 709794 4836698 PICST_29620 Pichia stipitis CBS 6054 predicted protein XP_001382900.2 709003 R 322104 CDS PICST_55133 126132752 4837279 complement(710092..710844) 1 NC_009042.1 go_component: nucleus; go_process: ribosome biogenesis; predicted protein 710844 4837279 PICST_55133 Pichia stipitis CBS 6054 predicted protein XP_001382901.1 710092 R 322104 CDS PICST_34924 150863782 4836903 join(711232..711303,711496..711735,711793..713535) 1 NC_009042.1 predicted protein 713535 4836903 PICST_34924 Pichia stipitis CBS 6054 predicted protein XP_001382376.2 711232 D 322104 CDS PICST_76246 126132754 4837253 complement(join(713873..714132,714700..714706)) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 714706 4837253 PICST_76246 Pichia stipitis CBS 6054 predicted protein XP_001382902.1 713873 R 322104 CDS PICST_55913 150863783 4837437 join(<715443..715619,715672..715719,715785..716363,716625..717248) 1 NC_009042.1 predicted protein 717248 4837437 PICST_55913 Pichia stipitis CBS 6054 predicted protein XP_001382377.2 <715443 D 322104 CDS PICST_54949 150864181 4837481 complement(<717381..719165) 1 NC_009042.1 predicted protein 719165 4837481 PICST_54949 Pichia stipitis CBS 6054 predicted protein XP_001382903.2 <717381 R 322104 CDS PICST_56381 126131706 4837071 719636..719926 1 NC_009042.1 predicted protein 719926 4837071 PICST_56381 Pichia stipitis CBS 6054 predicted protein XP_001382378.1 719636 D 322104 CDS PICST_41737 150863784 4837369 join(<724150..724611,724828..726138) 1 NC_009042.1 predicted protein 726138 4837369 PICST_41737 Pichia stipitis CBS 6054 predicted protein XP_001382379.2 <724150 D 322104 CDS PICST_29627 150864182 4836631 complement(726842..728206) 1 NC_009042.1 S. cerevisiae homolog is necessary for sensitivity to a killer toxin (SMK toxin) produced by Pichia Farinosa; PF1 P-type ATPase 728206 SPF1.2 4836631 SPF1.2 Pichia stipitis CBS 6054 PF1 P-type ATPase XP_001382904.2 726842 R 322104 CDS PICST_75833 150863785 4836914 729543..730991 1 NC_009042.1 go_function: nucleic acid binding; helicase activity; ATP binding; pre-mRNA splicing factor RNA helicase of DEAD box family 730991 PRP28 4836914 PRP28 Pichia stipitis CBS 6054 pre-mRNA splicing factor RNA helicase of DEAD box family XP_001382380.2 729543 D 322104 CDS PICST_56179 150864183 4837141 complement(join(731098..731183,731208..732132)) 1 NC_009042.1 predicted protein 732132 4837141 PICST_56179 Pichia stipitis CBS 6054 predicted protein XP_001382905.2 731098 R 322104 CDS PICST_66865 126132762 4837514 complement(732529..733065) 1 NC_009042.1 similar to cell wall integrity and stress response component 2; hypothetical beta-1,6-N-acetylglucosaminyltransferase 733065 TIR3 4837514 TIR3 Pichia stipitis CBS 6054 hypothetical beta-1,6-N-acetylglucosaminyltransferase XP_001382906.1 732529 R 322104 CDS PICST_40324 126132764 4837286 complement(735590..737050) 1 NC_009042.1 Peroxisomal catalase (PXP-9) (CATA); go_function: catalase activity; go_process: electron transport; response to oxidative stress; Peroxisomal catalase (PXP-9) 737050 CAT1 4837286 CAT1 Pichia stipitis CBS 6054 Peroxisomal catalase (PXP-9) XP_001382907.1 735590 R 322104 CDS PICST_55876 150864184 4837555 complement(738695..739885) 1 NC_009042.1 predicted protein 739885 4837555 PICST_55876 Pichia stipitis CBS 6054 predicted protein XP_001382908.2 738695 R 322104 CDS PICST_76625 126131712 4837232 740638..741069 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; Mitochondrial/chloroplast ribosomal protein L11 741069 MRP19 4837232 MRP19 Pichia stipitis CBS 6054 Mitochondrial/chloroplast ribosomal protein L11 XP_001382381.1 740638 D 322104 CDS PICST_41008 150864185 4837001 complement(join(741539..743597,743655..>744076)) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; nitrogen permease reactivator protein 743597 NPR1 4837001 NPR1 Pichia stipitis CBS 6054 nitrogen permease reactivator protein XP_001382909.2 741539 R 322104 CDS PICST_29635 150864186 4837390 complement(746186..747910) 1 NC_009042.1 predicted protein 747910 4837390 PICST_29635 Pichia stipitis CBS 6054 predicted protein XP_001382910.2 746186 R 322104 CDS PICST_66867 150864187 4836978 complement(748781..750172) 1 NC_009042.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 750172 4836978 PICST_66867 Pichia stipitis CBS 6054 predicted protein XP_001382911.2 748781 R 322104 CDS PICST_41524 150863786 4837183 750627..752204 1 NC_009042.1 predicted protein 752204 4837183 PICST_41524 Pichia stipitis CBS 6054 predicted protein XP_001382382.2 750627 D 322104 CDS PICST_42120 150864188 4836930 complement(752503..754221) 1 NC_009042.1 alpha-D-glucosidase (maltase) ( alpha-amylase) (MAL2) (MALT); go_function: alpha-amylase activity; go_process: carbohydrate metabolism; alpha-glucosidase maltase 754221 MAL6 4836930 MAL6 Pichia stipitis CBS 6054 alpha-glucosidase maltase XP_001382912.2 752503 R 322104 CDS PICST_29639 126131716 4837641 755442..757187 1 NC_009042.1 maltose permease some smilarity to Candida albicans MAL31 and Candida intermedia GXS1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; maltose permease 757187 MAL1 4837641 MAL1 Pichia stipitis CBS 6054 maltose permease XP_001382383.1 755442 D 322104 CDS PICST_29640 150864189 4837520 complement(757822..758481) 1 NC_009042.1 predicted protein 758481 4837520 PICST_29640 Pichia stipitis CBS 6054 predicted protein XP_001382913.2 757822 R 322104 CDS PICST_29641 150863787 4837374 join(759025..759148,759221..759705) 1 NC_009042.1 predicted protein 759705 4837374 PICST_29641 Pichia stipitis CBS 6054 predicted protein XP_001382384.2 759025 D 322104 CDS PICST_82174 126132778 4836769 complement(759975..760655) 1 NC_009042.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; RHO small monomeric GTPase signal transduction 760655 RAC1 4836769 RAC1 Pichia stipitis CBS 6054 RHO small monomeric GTPase signal transduction XP_001382914.1 759975 R 322104 CDS PICST_41267 150863788 4836995 761990..763210 1 NC_009042.1 go_function: oxidoreductase activity; go_process: electron transport; glycerol-3-phospate dehydrogenase 763210 GPH2 4836995 GPH2 Pichia stipitis CBS 6054 glycerol-3-phospate dehydrogenase XP_001382385.2 761990 D 322104 CDS PICST_54142 150864190 4837121 complement(763308..764324) 1 NC_009042.1 cyclin-dependent serine-threonine kinase 7, subunit of RNA Pol TFIIK; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine-threonine kinase, subunit of RNA Pol TFIIK 764324 KIN28 4837121 KIN28 Pichia stipitis CBS 6054 serine-threonine kinase, subunit of RNA Pol TFIIK XP_001382915.2 763308 R 322104 CDS PICST_70251 150864191 4837300 complement(764716..765972) 1 NC_009042.1 predicted protein 765972 4837300 PICST_70251 Pichia stipitis CBS 6054 predicted protein XP_001382916.2 764716 R 322104 CDS PICST_29646 150864192 4837173 complement(join(766101..766135,766173..767994)) 1 NC_009042.1 predicted protein 767994 4837173 PICST_29646 Pichia stipitis CBS 6054 predicted protein XP_001382917.2 766101 R 322104 CDS PICST_88066 150864193 4836825 complement(769376..770959) 1 NC_009042.1 predicted protein 770959 4836825 PICST_88066 Pichia stipitis CBS 6054 predicted protein XP_001382918.2 769376 R 322104 CDS PICST_29648 150863789 4836659 771797..774121 1 NC_009042.1 predicted protein 774121 4836659 PICST_29648 Pichia stipitis CBS 6054 predicted protein XP_001382386.2 771797 D 322104 CDS PICST_29649 150863790 4837602 join(774447..774467,774532..776049) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 776049 4837602 PICST_29649 Pichia stipitis CBS 6054 predicted protein XP_001382387.2 774447 D 322104 CDS PICST_87915 150864194 4837181 complement(776239..777396) 1 NC_009042.1 predicted protein 777396 4837181 PICST_87915 Pichia stipitis CBS 6054 predicted protein XP_001382919.2 776239 R 322104 CDS PICST_34942 150864195 4837287 complement(join(777944..778341,778370..778373,778493..778633,778895..779767)) 1 NC_009042.1 go_component: nucleus; go_function: DNA binding; transcription factor activity; go_process: regulation of transcription, DNA-dependent; predicted protein 779767 4837287 PICST_34942 Pichia stipitis CBS 6054 predicted protein XP_001382920.2 777944 R 322104 CDS PICST_41404 150864196 4837064 complement(782562..>783683) 1 NC_009042.1 predicted protein >783683 4837064 PICST_41404 Pichia stipitis CBS 6054 predicted protein XP_001382921.2 782562 R 322104 CDS PICST_42242 150863791 4837160 join(785883..785989,786095..786533) 1 NC_009042.1 predicted protein 786533 4837160 PICST_42242 Pichia stipitis CBS 6054 predicted protein XP_001382388.2 785883 D 322104 CDS PICST_68558 126132794 4836752 complement(786891..787937) 1 NC_009042.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; alcohol dehydrogenase 787937 ADH1 4836752 ADH1 Pichia stipitis CBS 6054 alcohol dehydrogenase XP_001382922.1 786891 R 322104 CDS PICST_29656 150864197 4837014 complement(789401..791065) 1 NC_009042.1 GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis; glycosyl phosphatidylinositol (GPI) synthesis 791065 GPI10 4837014 GPI10 Pichia stipitis CBS 6054 glycosyl phosphatidylinositol (GPI) synthesis XP_001382923.2 789401 R 322104 CDS PICST_56126 150863792 4837394 791492..793726 1 NC_009042.1 predicted protein 793726 4837394 PICST_56126 Pichia stipitis CBS 6054 predicted protein XP_001382389.2 791492 D 322104 CDS PICST_65168 150863793 4836845 794097..795134 1 NC_009042.1 Catalyzes the transfer of oligosaccharide from dolichol-oligosaccharide donor to consensus glycosylation acceptor sites (asparagines) in newly synthesized proteins; Oligosaccharyltransferase, gamma subunit 795134 OST3 4836845 OST3 Pichia stipitis CBS 6054 Oligosaccharyltransferase, gamma subunit XP_001382390.2 794097 D 322104 CDS PICST_54968 150864198 4836856 complement(795305..795634) 1 NC_009042.1 predicted protein 795634 4836856 PICST_54968 Pichia stipitis CBS 6054 predicted protein XP_001382924.2 795305 R 322104 CDS PICST_55443 150863794 4837470 join(796193..796298,796428..797892,797995..>798490) 1 NC_009042.1 predicted protein 797892 4837470 PICST_55443 Pichia stipitis CBS 6054 predicted protein XP_001382391.2 796193 D 322104 CDS PICST_54117 126132800 4837221 complement(<798950..799357) 1 NC_009042.1 predicted protein 799357 4837221 PICST_54117 Pichia stipitis CBS 6054 predicted protein XP_001382925.1 <798950 R 322104 CDS PICST_10913 150864199 4837524 complement(<801233..>803161) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal specific transcription factor >803161 PPR1 4837524 PPR1 Pichia stipitis CBS 6054 Fungal specific transcription factor XP_001382926.2 <801233 R 322104 CDS PICST_87049 150864200 4837458 complement(804374..806488) 1 NC_009042.1 predicted protein 806488 4837458 PICST_87049 Pichia stipitis CBS 6054 predicted protein XP_001382927.2 804374 R 322104 CDS PICST_34948 150863795 4836735 join(809285..810596,810744..811002,811060..811297) 1 NC_009042.1 predicted protein 811297 4836735 PICST_34948 Pichia stipitis CBS 6054 predicted protein XP_001382392.2 809285 D 322104 CDS PICST_87252 126132806 4836918 complement(813004..814005) 1 NC_009042.1 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH); go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity; go_process: glycolysis; Glyceraldehyde-3-phosphate dehydrogenase 814005 TDH1 4836918 TDH1 Pichia stipitis CBS 6054 Glyceraldehyde-3-phosphate dehydrogenase XP_001382928.1 813004 R 322104 CDS PICST_29665 150864201 4837026 complement(join(815021..815055,815172..815958)) 1 NC_009042.1 predicted protein 815958 4837026 PICST_29665 Pichia stipitis CBS 6054 predicted protein XP_001382929.2 815021 R 322104 CDS PICST_29666 126132810 4837234 complement(816664..817680) 1 NC_009042.1 short-chain alcohol dehydrogenase retinol dehydrogenase; short-chain alcohol dehydrogenase 817680 RDH1 4837234 RDH1 Pichia stipitis CBS 6054 short-chain alcohol dehydrogenase XP_001382930.1 816664 R 322104 CDS PICST_81469 126132812 4837133 complement(819796..820800) 1 NC_009042.1 go_function: oxidoreductase activity; go_process: metabolism; short-chain alcohol dehydrogenase retinol dehydrogenase Protochlorophyllide reductase 820800 RDH2 4837133 RDH2 Pichia stipitis CBS 6054 short-chain alcohol dehydrogenase retinol dehydrogenase Protochlorophyllide reductase XP_001382931.1 819796 R 322104 CDS PICST_66879 150863796 4836896 821358..822311 1 NC_009042.1 predicted protein 822311 4836896 PICST_66879 Pichia stipitis CBS 6054 predicted protein XP_001382393.2 821358 D 322104 CDS PICST_54744 150863797 4837104 join(825217..826009,826028..826644) 1 NC_009042.1 transcription factor, contains a PHD finger motif 826644 ASH2 4837104 ASH2 Pichia stipitis CBS 6054 transcription factor, contains a PHD finger motif XP_001382394.2 825217 D 322104 CDS PICST_54896 150864202 4836880 complement(<826907..827608) 1 NC_009042.1 predicted protein 827608 4836880 PICST_54896 Pichia stipitis CBS 6054 predicted protein XP_001382932.2 <826907 R 322104 CDS PICST_4167 150863798 4837267 <828317..>829060 1 NC_009042.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; predicted protein >829060 4837267 PICST_4167 Pichia stipitis CBS 6054 predicted protein XP_001382395.2 <828317 D 322104 CDS PICST_70563 150863799 4837256 830990..833926 1 NC_009042.1 6-phosphofructokinase, alpha subunit [EC:2.7.1.11] [KO:K00850] (Phosphofructokinase 1) (Phosphohexokinase) (6PF-1-K alpha subunit); go_component: 6-phosphofructokinase complex; go_function: 6-phosphofructokinase activity; go_process: glycolysis; 6-phosphofructokinase, alpha subunit 833926 PFK1 4837256 PFK1 Pichia stipitis CBS 6054 6-phosphofructokinase, alpha subunit XP_001382396.2 830990 D 322104 CDS PICST_66881 150863800 4837260 840599..842599 1 NC_009042.1 Heat shock transcription factor; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; heat-shock related protein 842599 HSR1 4837260 HSR1 Pichia stipitis CBS 6054 heat-shock related protein XP_001382397.2 840599 D 322104 CDS PICST_66882 126132816 4836925 complement(843191..843757) 1 NC_009042.1 predicted protein 843757 4836925 PICST_66882 Pichia stipitis CBS 6054 predicted protein XP_001382933.1 843191 R 322104 CDS PICST_29675 150863801 4837191 845148..846086 1 NC_009042.1 predicted protein 846086 4837191 PICST_29675 Pichia stipitis CBS 6054 predicted protein XP_001382398.2 845148 D 322104 CDS PICST_40987 126132818 4837039 complement(join(846340..846734,846857..846881)) 1 NC_009042.1 go_process: vesicle-mediated transport; Golgi Transport 846881 GOT1 4837039 GOT1 Pichia stipitis CBS 6054 Golgi Transport XP_001382934.1 846340 R 322104 CDS PICST_29677 150863802 4836849 join(848108..848312,848379..849007) 1 NC_009042.1 predicted protein 849007 4836849 PICST_29677 Pichia stipitis CBS 6054 predicted protein XP_001382399.2 848108 D 322104 CDS PICST_55391 150864203 4837042 complement(849318..850997) 1 NC_009042.1 go_function: oxidoreductase activity; go_process: metabolism; delta-1-pyrroline-5-carboxylate dehydrogenase 850997 PUT2 4837042 PUT2 Pichia stipitis CBS 6054 delta-1-pyrroline-5-carboxylate dehydrogenase XP_001382935.2 849318 R 322104 CDS PICST_41366 150864204 4836678 complement(851569..852771) 1 NC_009042.1 predicted protein 852771 4836678 PICST_41366 Pichia stipitis CBS 6054 predicted protein XP_001382936.2 851569 R 322104 CDS PICST_42420 150864205 4837567 complement(853175..854281) 1 NC_009042.1 go_function: GTP binding; predicted protein 854281 4837567 PICST_42420 Pichia stipitis CBS 6054 predicted protein XP_001382937.2 853175 R 322104 CDS PICST_40337 126131750 4836790 854878..855579 1 NC_009042.1 predicted protein 855579 4836790 PICST_40337 Pichia stipitis CBS 6054 predicted protein XP_001382400.1 854878 D 322104 CDS PICST_54312 150864206 4836784 complement(855815..861643) 1 NC_009042.1 DNA/RNA helicase MER3/SLH1, DEAD-box superfamily; go_component: nucleus; go_function: nucleic acid binding; helicase activity; ATP binding; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; DNA-directed DNA polymerase 861643 SLH1 4836784 SLH1 Pichia stipitis CBS 6054 DNA-directed DNA polymerase XP_001382938.2 855815 R 322104 CDS PICST_81459 150863803 4836874 862106..863809 1 NC_009042.1 ATP-dependent RNA helicase HAS1; go_function: nucleic acid binding; helicase activity; ATP binding; RNA-dependent helicase 863809 HAS1 4836874 HAS1 Pichia stipitis CBS 6054 RNA-dependent helicase XP_001382401.2 862106 D 322104 CDS PICST_40682 150863804 4837670 864132..865595 1 NC_009042.1 DNA polymerase delta small subunit (Hydroxyurea sensitive protein HYS2) 865595 HYS2 4837670 HYS2 Pichia stipitis CBS 6054 DNA polymerase delta small subunit (Hydroxyurea sensitive protein HYS2) XP_001382402.2 864132 D 322104 CDS PICST_82373 150863805 4837316 join(867949..868255,868274..868429,868463..868777,868826..871803) 1 NC_009042.1 SSD1 protein (SRK1 protein) Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3; go_function: RNA binding; ribonuclease activity; Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 871803 SSD1 4837316 SSD1 Pichia stipitis CBS 6054 Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 XP_001382403.2 867949 D 322104 CDS PICST_29686 150864207 4836869 complement(872114..873478) 1 NC_009042.1 predicted protein 873478 4836869 PICST_29686 Pichia stipitis CBS 6054 predicted protein XP_001382939.2 872114 R 322104 CDS PICST_34960 126131758 4837457 873993..874805 1 NC_009042.1 go_function: GTP cyclohydrolase I activity; go_process: biosynthesis; GTP cyclohydrolase I (GTP-CH-I) 874805 GHC1 4837457 GHC1 Pichia stipitis CBS 6054 GTP cyclohydrolase I (GTP-CH-I) XP_001382404.1 873993 D 322104 CDS PICST_87495 150864208 4837538 complement(875172..876701) 1 NC_009042.1 glutamyl-tRNA (Gln) amidotransferase subunit A; go_function: amidase activity; amidase (GATA)-like protein 876701 GTA2 4837538 GTA2 Pichia stipitis CBS 6054 amidase (GATA)-like protein XP_001382940.2 875172 R 322104 CDS PICST_76328 126131760 4836672 877230..879503 1 NC_009042.1 Methionyl-tRNA synthetase, cytoplasmic (Methionine--tRNA ligase) (MetRS); go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; methionyl tRNA synthetase 879503 MES1 4836672 MES1 Pichia stipitis CBS 6054 methionyl tRNA synthetase XP_001382405.1 877230 D 322104 CDS PICST_40695 150864209 4836962 complement(join(<881023..883674,883807..>884346)) 1 NC_009042.1 go_function: phosphatidylserine decarboxylase activity; go_process: phospholipid biosynthesis; phosphatidylserine decarboxylase 883674 PSD2 4836962 PSD2 Pichia stipitis CBS 6054 phosphatidylserine decarboxylase XP_001382941.2 <881023 R 322104 CDS PICST_87761 150864210 4836684 complement(885202..886839) 1 NC_009042.1 GTP binding Signal Recognition Particle receptor alpha subunit homolog (SR-alpha) (Docking protein alpha) (DP-alpha) (G domain); go_component: signal recognition particle (sensu Eukaryota); go_function: RNA binding; GTP binding; go_process: SRP-dependent cotranslational protein-membrane targeting; GTP binding signal recognition particle receptor 886839 SRP101 4836684 SRP101 Pichia stipitis CBS 6054 GTP binding signal recognition particle receptor XP_001382942.2 885202 R 322104 CDS PICST_55366 126131762 4836646 888085..888816 1 NC_009042.1 predicted protein 888816 4836646 PICST_55366 Pichia stipitis CBS 6054 predicted protein XP_001382406.1 888085 D 322104 CDS PICST_81660 150863806 4836955 889185..890939 1 NC_009042.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; methionyl-tRNA synthetase, mitochondrial 890939 MSM1 4836955 MSM1 Pichia stipitis CBS 6054 methionyl-tRNA synthetase, mitochondrial XP_001382407.2 889185 D 322104 CDS PICST_56164 150863807 4836763 join(<892329..892637,892728..893373,893410..>895607) 1 NC_009042.1 TAT-binding homolog 7, AAA ATPase family protein; go_function: ATP binding; TAT-binding protein-like protein 7, AAA ATPase family 893373 YTA7 4836763 YTA7 Pichia stipitis CBS 6054 TAT-binding protein-like protein 7, AAA ATPase family XP_001382408.2 <892329 D 322104 CDS PICST_40336 126132836 4836943 complement(896606..896944) 1 NC_009042.1 go_component: nucleus; go_function: positive transcription elongation factor activity; zinc ion binding; go_process: positive regulation of transcription; predicted protein 896944 4836943 PICST_40336 Pichia stipitis CBS 6054 predicted protein XP_001382943.1 896606 R 322104 CDS PICST_87128 150863808 4836635 897264..898181 1 NC_009042.1 Inner membrane protein translocase involved in respiratory chain assembly; COX18; required for export of the Cox2p C terminus from the mitochondrial matrix to the intermembrane space; go_component: membrane; go_process: signal transduction; COX18; cytochrome c oxidase assembly protein 898181 COX18 4836635 COX18 Pichia stipitis CBS 6054 COX18; cytochrome c oxidase assembly protein XP_001382409.2 897264 D 322104 CDS PICST_29697 150863809 4837315 898383..899285 1 NC_009042.1 predicted protein 899285 4837315 PICST_29697 Pichia stipitis CBS 6054 predicted protein XP_001382410.2 898383 D 322104 CDS PICST_76305 150864211 4837347 complement(899350..901869) 1 NC_009042.1 predicted protein 901869 4837347 PICST_76305 Pichia stipitis CBS 6054 predicted protein XP_001382944.2 899350 R 322104 CDS PICST_34966 150863810 4837669 902222..903016 1 NC_009042.1 predicted protein 903016 4837669 PICST_34966 Pichia stipitis CBS 6054 predicted protein XP_001382411.2 902222 D 322104 CDS PICST_34967 150864212 4837426 complement(903122..904426) 1 NC_009042.1 predicted protein 904426 4837426 PICST_34967 Pichia stipitis CBS 6054 predicted protein XP_001382945.2 903122 R 322104 CDS PICST_69995 150864213 4837447 complement(<904535..905029) 1 NC_009042.1 predicted protein 905029 4837447 PICST_69995 Pichia stipitis CBS 6054 predicted protein XP_001382946.2 <904535 R 322104 CDS PICST_70851 150863811 4837322 905934..906488 1 NC_009042.1 predicted protein 906488 4837322 PICST_70851 Pichia stipitis CBS 6054 predicted protein XP_001382412.2 905934 D 322104 CDS PICST_29702 126131776 4837075 909282..909947 1 NC_009042.1 predicted protein 909947 4837075 PICST_29702 Pichia stipitis CBS 6054 predicted protein XP_001382413.1 909282 D 322104 CDS PICST_29703 150863812 4837313 911666..912313 1 NC_009042.1 predicted protein 912313 4837313 PICST_29703 Pichia stipitis CBS 6054 predicted protein XP_001382414.2 911666 D 322104 CDS PICST_29704 150863813 4836934 914089..914796 1 NC_009042.1 predicted protein 914796 4836934 PICST_29704 Pichia stipitis CBS 6054 predicted protein XP_001382415.2 914089 D 322104 CDS PICST_5279 126131782 4837314 <915862..>916947 1 NC_009042.1 go_function: RNA binding; endoribonuclease activity; predicted protein >916947 4837314 PICST_5279 Pichia stipitis CBS 6054 predicted protein XP_001382416.1 <915862 D 322104 CDS PICST_76463 126132844 4837304 complement(917460..918809) 1 NC_009042.1 go_function: adenosylhomocysteinase activity; go_process: one-carbon compound metabolism; S-adenosyl-L-homocysteine hydrolase 918809 SAH1 4837304 SAH1 Pichia stipitis CBS 6054 S-adenosyl-L-homocysteine hydrolase XP_001382947.1 917460 R 322104 CDS PICST_66895 150864214 4837271 complement(920176..922524) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; regulates glutamine-repressible gene products 922524 GLN3 4837271 GLN3 Pichia stipitis CBS 6054 regulates glutamine-repressible gene products XP_001382948.2 920176 R 322104 CDS PICST_66897 150864215 4837503 complement(928304..931285) 1 NC_009042.1 predicted protein 931285 4837503 PICST_66897 Pichia stipitis CBS 6054 predicted protein XP_001382949.2 928304 R 322104 CDS PICST_29712 150864216 4836861 complement(937285..940041) 1 NC_009042.1 hypothetical protein Putative serine proteinase inhibitor (KU family) with thrombospondin repeats; go_function: heme binding; electron transporter activity; go_process: electron transport; Putative serine proteinase inhibitor (KU family) with thrombospondin repeats 940041 SPI1.2 4836861 SPI1.2 Pichia stipitis CBS 6054 Putative serine proteinase inhibitor (KU family) with thrombospondin repeats XP_001382950.2 937285 R 322104 CDS PICST_29713 150864217 4836878 complement(join(941537..943808,943890..943930)) 1 NC_009042.1 predicted protein 943930 4836878 PICST_29713 Pichia stipitis CBS 6054 predicted protein XP_001382951.2 941537 R 322104 CDS PICST_34969 150863814 4836686 join(945807..946160,946224..946922,947025..948245) 1 NC_009042.1 predicted protein 948245 4836686 PICST_34969 Pichia stipitis CBS 6054 predicted protein XP_001382417.2 945807 D 322104 CDS PICST_55369 126132854 4836857 complement(948454..948888) 1 NC_009042.1 Ferredoxin mitochondrial matrix iron-sulfur protein; go_function: electron transporter activity; go_process: electron transport; mitochondrial matrix iron-sulfur protein 948888 YAH1 4836857 YAH1 Pichia stipitis CBS 6054 mitochondrial matrix iron-sulfur protein XP_001382952.1 948454 R 322104 CDS PICST_34970 150864218 4836976 complement(join(949771..950336,950505..950598)) 1 NC_009042.1 go_component: integral to membrane; go_process: intracellular protein transport; predicted protein 950598 4836976 PICST_34970 Pichia stipitis CBS 6054 predicted protein XP_001382953.2 949771 R 322104 CDS PICST_87266 150864219 4837382 complement(950814..953957) 1 NC_009042.1 conserved hypothetical protein 953957 4837382 PICST_87266 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001382954.2 950814 R 322104 CDS PICST_75870 150864220 4837661 complement(955199..956731) 1 NC_009042.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; predicted protein 956731 4837661 PICST_75870 Pichia stipitis CBS 6054 predicted protein XP_001382955.2 955199 R 322104 CDS PICST_55633 150864221 4836738 complement(<957552..>958856) 1 NC_009042.1 predicted protein >958856 4836738 PICST_55633 Pichia stipitis CBS 6054 predicted protein XP_001382956.2 <957552 R 322104 CDS PICST_41601 150863815 4837656 <961531..962829 1 NC_009042.1 predicted protein 962829 4837656 PICST_41601 Pichia stipitis CBS 6054 predicted protein XP_001382418.2 <961531 D 322104 CDS PICST_29721 150864222 4837485 complement(join(962964..963024,963092..964914)) 1 NC_009042.1 predicted protein 964914 4837485 PICST_29721 Pichia stipitis CBS 6054 predicted protein XP_001382957.2 962964 R 322104 CDS PICST_41453 150864223 4836979 complement(<965602..967020) 1 NC_009042.1 multidrug-resistance type transporter; aminotriazole resistance; multidrug-resistance type transporter aminotriazole resistance 967020 ATR1 4836979 ATR1 Pichia stipitis CBS 6054 multidrug-resistance type transporter aminotriazole resistance XP_001382958.2 <965602 R 322104 CDS PICST_34974 150864224 4836807 complement(967852..968862) 1 NC_009042.1 NADPH-dependent Cinnamyl-alcohol dehydrogenase 968862 GRP2.2 4836807 GRP2.2 Pichia stipitis CBS 6054 NADPH-dependent Cinnamyl-alcohol dehydrogenase XP_001382959.2 967852 R 322104 CDS PICST_41434 150864225 4836705 complement(970317..970826) 1 NC_009042.1 go_component: Golgi cis-face; go_process: ER to Golgi transport; predicted protein 970826 4836705 PICST_41434 Pichia stipitis CBS 6054 predicted protein XP_001382960.2 970317 R 322104 CDS PICST_29725 150863816 4837407 972266..972646 1 NC_009042.1 predicted protein 972646 4837407 PICST_29725 Pichia stipitis CBS 6054 predicted protein XP_001382419.2 972266 D 322104 CDS PICST_41966 150864226 4836951 complement(join(973558..975259,975323..975486)) 1 NC_009042.1 go_component: membrane; go_process: transport; general amino acid permease 975486 GAP1.7 4836951 GAP1.7 Pichia stipitis CBS 6054 general amino acid permease XP_001382961.2 973558 R 322104 CDS PICST_29727 150864227 4837622 complement(976966..978501) 1 NC_009042.1 predicted protein 978501 4837622 PICST_29727 Pichia stipitis CBS 6054 predicted protein XP_001382962.2 976966 R 322104 CDS PICST_42384 150864228 4837415 complement(979084..980874) 1 NC_009042.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; allantoin permease 980874 DAL4.3 4837415 DAL4.3 Pichia stipitis CBS 6054 allantoin permease XP_001382963.2 979084 R 322104 CDS PICST_55651 150863817 4837621 <983078..985999 1 NC_009042.1 predicted protein 985999 4837621 PICST_55651 Pichia stipitis CBS 6054 predicted protein XP_001382420.2 <983078 D 322104 CDS PICST_29730 126132878 4836814 complement(986144..986776) 1 NC_009042.1 predicted protein 986776 4836814 PICST_29730 Pichia stipitis CBS 6054 predicted protein XP_001382964.1 986144 R 322104 CDS PICST_40413 150864229 4836700 complement(join(988164..988483,989126..990053)) 1 NC_009042.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; predicted protein 990053 4836700 PICST_40413 Pichia stipitis CBS 6054 predicted protein XP_001382965.2 988164 R 322104 CDS PICST_76043 150863818 4836662 991757..992665 1 NC_009042.1 predicted protein 992665 4836662 PICST_76043 Pichia stipitis CBS 6054 predicted protein XP_001382421.2 991757 D 322104 CDS PICST_40677 150864230 4837601 complement(join(994430..995134,995177..995881)) 1 NC_009042.1 go_function: aminomethyltransferase activity; predicted protein 995881 4837601 PICST_40677 Pichia stipitis CBS 6054 predicted protein XP_001382966.2 994430 R 322104 CDS PICST_42139 150864231 4837620 complement(996469..999018) 1 NC_009042.1 go_function: acyltransferase activity; predicted protein 999018 4837620 PICST_42139 Pichia stipitis CBS 6054 predicted protein XP_001382967.2 996469 R 322104 CDS PICST_29736 150864232 4837633 complement(1000679..1004638) 1 NC_009042.1 go_function: hydrolase activity; catalytic activity; 5-oxoprolinase 1004638 HYU1.2 4837633 HYU1.2 Pichia stipitis CBS 6054 5-oxoprolinase XP_001382968.2 1000679 R 322104 CDS PICST_41328 150863819 4836824 1006808..1008070 1 NC_009042.1 predicted protein 1008070 4836824 PICST_41328 Pichia stipitis CBS 6054 predicted protein XP_001382422.2 1006808 D 322104 CDS PICST_41175 150864233 4837497 complement(join(1008209..1008714,1008760..1008884,1009002..1009230,1009270..>1010572)) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1009230 4837497 PICST_41175 Pichia stipitis CBS 6054 predicted protein XP_001382969.2 1008209 R 322104 CDS PICST_4539 150863820 4837070 1015371..>1016786 1 NC_009042.1 Agglutinin-like protein 1 precursor >1016786 ALS1.2 4837070 ALS1.2 Pichia stipitis CBS 6054 Agglutinin-like protein 1 precursor XP_001382423.2 1015371 D 322104 CDS PICST_29740 126131798 4836842 1022656..1024251 1 NC_009042.1 Permease of the major facilitator superfamily; allantoate permease 1024251 DAL4 4836842 DAL4 Pichia stipitis CBS 6054 allantoate permease XP_001382424.1 1022656 D 322104 CDS PICST_66905 126132890 4837310 complement(1024618..1026351) 1 NC_009042.1 go_component: membrane; go_function: transporter activity; go_process: oligopeptide transport; predicted protein 1026351 4837310 PICST_66905 Pichia stipitis CBS 6054 predicted protein XP_001382970.1 1024618 R 322104 CDS PICST_70645 126132892 4836654 complement(1027363..1029075) 1 NC_009042.1 go_component: membrane; go_function: transporter activity; go_process: oligopeptide transport; predicted protein 1029075 4836654 PICST_70645 Pichia stipitis CBS 6054 predicted protein XP_001382971.1 1027363 R 322104 CDS PICST_65182 126132894 4837419 complement(1030896..1031894) 1 NC_009042.1 go_function: phosphorylase activity; predicted protein 1031894 4837419 PICST_65182 Pichia stipitis CBS 6054 predicted protein XP_001382972.1 1030896 R 322104 CDS PICST_54662 150863821 4837432 join(<1032967..1033062,1033087..1033716) 1 NC_009042.1 predicted protein 1033716 4837432 PICST_54662 Pichia stipitis CBS 6054 predicted protein XP_001382425.2 <1032967 D 322104 CDS PICST_42763 150864234 4837357 complement(join(1033979..1034109,1034260..1034559,1034683..1035050,1035192..>1035595)) 1 NC_009042.1 predicted protein 1035050 4837357 PICST_42763 Pichia stipitis CBS 6054 predicted protein XP_001382973.2 1033979 R 322104 CDS PICST_54331 150863822 4836767 join(1037406..1038048,1038091..1039613) 1 NC_009042.1 predicted protein 1039613 4836767 PICST_54331 Pichia stipitis CBS 6054 predicted protein XP_001382426.2 1037406 D 322104 CDS PICST_66908 150864235 4837311 complement(1039839..1040588) 1 NC_009042.1 predicted protein 1040588 4837311 PICST_66908 Pichia stipitis CBS 6054 predicted protein XP_001382974.2 1039839 R 322104 CDS PICST_41315 150864236 4836810 complement(<1041365..>1043014) 1 NC_009042.1 involved in adding the 4th and 5th mannose residues of O-linked glycans; alpha-1,3- mannosyltransferase >1043014 MNT44 4836810 MNT44 Pichia stipitis CBS 6054 alpha-1,3- mannosyltransferase XP_001382975.2 <1041365 R 322104 CDS PICST_81453 126132902 4836713 complement(1045654..1047423) 1 NC_009042.1 go_component: membrane; go_process: transport; general amino acid permease 1047423 GAP1.3 4836713 GAP1.3 Pichia stipitis CBS 6054 general amino acid permease XP_001382976.1 1045654 R 322104 CDS PICST_55048 150864237 4836788 complement(1050036..1050926) 1 NC_009042.1 go_function: catalytic activity; go_process: biosynthesis; predicted protein 1050926 4836788 PICST_55048 Pichia stipitis CBS 6054 predicted protein XP_001382977.2 1050036 R 322104 CDS PICST_34985 126132906 4836922 complement(1051390..1052505) 1 NC_009042.1 go_function: catalytic activity; go_process: metabolism; predicted protein 1052505 4836922 PICST_34985 Pichia stipitis CBS 6054 predicted protein XP_001382978.1 1051390 R 322104 CDS PICST_41720 150864238 4837143 complement(1053218..1053871) 1 NC_009042.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1053871 4837143 PICST_41720 Pichia stipitis CBS 6054 predicted protein XP_001382979.2 1053218 R 322104 CDS PICST_34987 126131804 4837273 join(1054960..1055611,1055705..1055838) 1 NC_009042.1 go_process: protein folding; predicted protein 1055838 4837273 PICST_34987 Pichia stipitis CBS 6054 predicted protein XP_001382427.1 1054960 D 322104 CDS PICST_42114 150864239 4836734 complement(1056737..1058182) 1 NC_009042.1 Oligosaccharyltransferase catalyzes the transfer of oligosaccharide from dolichol-oligosaccharide donor to consensus glycosylation acceptor sites (asparagines) in newly synthesized proteins in ER lumen; go_component: endoplasmic reticulum; integral to membrane; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity; go_process: protein amino acid glycosylation; oligosaccharyltransferase 1058182 OST1 4836734 OST1 Pichia stipitis CBS 6054 oligosaccharyltransferase XP_001382980.2 1056737 R 322104 CDS PICST_29755 150864240 4836801 complement(join(1058843..1058905,1059156..1059283,1059440..1059569)) 1 NC_009042.1 predicted protein 1059569 4836801 PICST_29755 Pichia stipitis CBS 6054 predicted protein XP_001382981.2 1058843 R 322104 CDS PICST_29756 150863823 4837561 1060073..1062541 1 NC_009042.1 go_function: GTP binding; GTPase activity; predicted protein 1062541 4837561 PICST_29756 Pichia stipitis CBS 6054 predicted protein XP_001382428.2 1060073 D 322104 CDS PICST_15898 150864241 4837428 complement(join(<1062829..1064408,1064442..1064640,1064689..>1064931)) 1 NC_009042.1 predicted protein 1064640 4837428 PICST_15898 Pichia stipitis CBS 6054 predicted protein XP_001382982.2 <1062829 R 322104 CDS PICST_81517 150863824 4836653 join(1067664..1067924,1067949..1068932) 1 NC_009042.1 go_component: membrane; go_function: glycolipid 2-alpha-mannosyltransferase activity; go_process: protein amino acid glycosylation; Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) 1068932 KRE2 4836653 KRE2 Pichia stipitis CBS 6054 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) XP_001382429.2 1067664 D 322104 CDS PICST_65185 126131810 4837261 join(1071369..1071540,1071586..1072595) 1 NC_009042.1 involved in n-linked and o-linked glycosylation; go_component: membrane; go_function: glycolipid 2-alpha-mannosyltransferase activity; go_process: protein amino acid glycosylation; alpha-1,2-mannosyltransferase 1072595 KTR1 4837261 KTR1 Pichia stipitis CBS 6054 alpha-1,2-mannosyltransferase XP_001382430.1 1071369 D 322104 CDS PICST_87538 150863825 4836680 join(1074781..1075140,1075402..1075629,1075798..1076088,1076227..1076485,1076675..1076784,1076932..1077036) 1 NC_009042.1 predicted protein 1077036 4836680 PICST_87538 Pichia stipitis CBS 6054 predicted protein XP_001382431.2 1074781 D 322104 CDS PICST_82096 150863826 4836676 join(1077628..1077721,1077773..1080042) 1 NC_009042.1 TAT-binding homolog 10; contains the peptidase M41 domain Mitochondrial respiratory chain complexes assembly protein AFG3; go_function: ATP binding; metalloendopeptidase activity; go_process: proteolysis and peptidolysis; AAA+-type ATPase 1080042 AFG3 4836676 AFG3 Pichia stipitis CBS 6054 AAA+-type ATPase XP_001382432.2 1077628 D 322104 CDS PICST_29762 150864242 4837494 complement(1080152..1082227) 1 NC_009042.1 hypothetical protein 1082227 4837494 PICST_29762 Pichia stipitis CBS 6054 hypothetical protein XP_001382983.2 1080152 R 322104 CDS PICST_9984 150864243 4836737 complement(<1083181..>1083366) 1 NC_009042.1 Uncharacterized conserved protein >1083366 4836737 PICST_9984 Pichia stipitis CBS 6054 Uncharacterized conserved protein XP_001382984.2 <1083181 R 322104 CDS PICST_70660 150864244 4836792 complement(1083666..1085045) 1 NC_009042.1 go_function: hydrolase activity; predicted protein 1085045 4836792 PICST_70660 Pichia stipitis CBS 6054 predicted protein XP_001382985.2 1083666 R 322104 CDS PICST_87280 150864245 4836760 complement(1085786..1089400) 1 NC_009042.1 go_function: protein transporter activity; go_process: intracellular protein transport; predicted protein 1089400 4836760 PICST_87280 Pichia stipitis CBS 6054 predicted protein XP_001382986.2 1085786 R 322104 CDS PICST_40512 150864246 4837630 complement(<1090562..1091599) 1 NC_009042.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; predicted protein 1091599 4837630 PICST_40512 Pichia stipitis CBS 6054 predicted protein XP_001382987.2 <1090562 R 322104 CDS PICST_41332 150864247 4836749 complement(join(1092694..1092821,1092891..1093085,1093347..1095879)) 1 NC_009042.1 go_process: signal transduction; predicted protein 1095879 4836749 PICST_41332 Pichia stipitis CBS 6054 predicted protein XP_001382988.2 1092694 R 322104 CDS PICST_54822 150864248 4837672 complement(join(1096880..1098981,1099015..1100834,1100910..>1101637)) 1 NC_009042.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 1100834 4837672 PICST_54822 Pichia stipitis CBS 6054 predicted protein XP_001382989.2 1096880 R 322104 CDS PICST_82348 150863827 4837473 join(1103092..1103237,1103253..1107138) 1 NC_009042.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; DNA-dependent ATPase of the nucleotide excision repair factor 4 complex 1107138 RAD15 4837473 RAD15 Pichia stipitis CBS 6054 DNA-dependent ATPase of the nucleotide excision repair factor 4 complex XP_001382433.2 1103092 D 322104 CDS PICST_29770 150864249 4837353 complement(1108636..1110966) 1 NC_009042.1 Cell division control protein 53 (Cullin A) acts together with Cdc4p and Cdc34p to control the G1-S phase transition, assists in mediating the proteolysis of the Cdk inhibitor Sic1p in late G1; go_process: cell cycle; ubiquitin ligase (cullin) of SCF involved in cell cycle control 1110966 CDC53 4837353 CDC53 Pichia stipitis CBS 6054 ubiquitin ligase (cullin) of SCF involved in cell cycle control XP_001382990.2 1108636 R 322104 CDS PICST_66921 150864250 4837557 complement(1111856..1113142) 1 NC_009042.1 predicted protein 1113142 4837557 PICST_66921 Pichia stipitis CBS 6054 predicted protein XP_001382991.2 1111856 R 322104 CDS PICST_56214 150863828 4837657 join(<1114229..1114543,1114568..1114988,1115064..1115212) 1 NC_009042.1 predicted protein 1115212 4837657 PICST_56214 Pichia stipitis CBS 6054 predicted protein XP_001382434.2 <1114229 D 322104 CDS PICST_29773 150863829 4837430 1116475..1117824 1 NC_009042.1 predicted protein 1117824 4837430 PICST_29773 Pichia stipitis CBS 6054 predicted protein XP_001382435.2 1116475 D 322104 CDS PICST_75615 150864251 4836847 complement(join(1117960..1121154,1121674..1121676)) 1 NC_009042.1 Encodes a protein with three regions (ABC) that is spliced to yield the extein AC & the intein B AC is a 69K vacuolar (H+)-ATPase & B is a 50K site-specific endonuclease named VDE (PI-SceI) that is homologous to HO; go_component: proton-transporting two-sector ATPase complex; go_function: ATP binding; hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; DNA binding; endonuclease activity; go_process: ATP synthesis coupled proton transport; ATP biosynthesis; protein splicing; Vacuolar H+-ATPase V1 sector, subunit A 1121676 TFP1 4836847 TFP1 Pichia stipitis CBS 6054 Vacuolar H+-ATPase V1 sector, subunit A XP_001382992.2 1117960 R 322104 CDS PICST_29775 150864252 4837219 complement(1122328..1122912) 1 NC_009042.1 predicted protein 1122912 4837219 PICST_29775 Pichia stipitis CBS 6054 predicted protein XP_001382993.2 1122328 R 322104 CDS PICST_76018 126132938 4837137 complement(1123376..1124536) 1 NC_009042.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 (NUEM)(NUO); NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 1124536 NUE1 4837137 NUE1 Pichia stipitis CBS 6054 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 XP_001382994.1 1123376 R 322104 CDS PICST_81790 150864253 4836980 complement(join(1125231..1126171,1126211..1126304)) 1 NC_009042.1 go_function: hydrolase activity; predicted protein 1126304 4836980 PICST_81790 Pichia stipitis CBS 6054 predicted protein XP_001382995.2 1125231 R 322104 CDS PICST_66925 150864254 4837455 complement(join(1127457..1127567,1127657..1127763,1127877..1130847)) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1130847 4837455 PICST_66925 Pichia stipitis CBS 6054 predicted protein XP_001382996.2 1127457 R 322104 CDS PICST_35001 150864255 4837051 complement(join(1133153..1133221,1133303..1133745,1133815..1134877)) 1 NC_009042.1 similar to ribitol kinase; Ribulokinase-like protein 1134877 MPA43 4837051 MPA43 Pichia stipitis CBS 6054 Ribulokinase-like protein XP_001382997.2 1133153 R 322104 CDS PICST_87531 126132946 4837083 complement(1135480..1136823) 1 NC_009042.1 contains WSC domain similar to TOS1 precursor (Target of SBF 1); hypothetical beta-1,6-N-acetylglucosaminyltransferase 1136823 TOS1 4837083 TOS1 Pichia stipitis CBS 6054 hypothetical beta-1,6-N-acetylglucosaminyltransferase XP_001382998.1 1135480 R 322104 CDS PICST_87921 126131822 4837500 1148139..1150454 1 NC_009042.1 go_function: nucleic acid binding; helicase activity; ATP binding; RNA helicase involved in spliceosome disassembly 1150454 PRP43 4837500 PRP43 Pichia stipitis CBS 6054 RNA helicase involved in spliceosome disassembly XP_001382436.1 1148139 D 322104 CDS PICST_56002 126131824 4836707 1152139..1152627 1 NC_009042.1 go_function: GTP binding; predicted protein 1152627 4836707 PICST_56002 Pichia stipitis CBS 6054 predicted protein XP_001382437.1 1152139 D 322104 CDS PICST_76151 126132948 4837111 complement(1153051..1153764) 1 NC_009042.1 go_function: ribose-5-phosphate isomerase activity; go_process: pentose-phosphate shunt, non-oxidative branch; ribose-5-phosphate ketol-isomerase 1153764 RKI1 4837111 RKI1 Pichia stipitis CBS 6054 ribose-5-phosphate ketol-isomerase XP_001382999.1 1153051 R 322104 CDS PICST_82308 126131826 4837131 1154535..1155101 1 NC_009042.1 40S ribosomal protein S7-A (RP30); go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; RPS7A; ribosomal protein S7A 1155101 RPS7A 4837131 RPS7A Pichia stipitis CBS 6054 RPS7A; ribosomal protein S7A XP_001382438.1 1154535 D 322104 CDS PICST_70032 150864256 4836833 complement(1155435..1157273) 1 NC_009042.1 predicted protein 1157273 4836833 PICST_70032 Pichia stipitis CBS 6054 predicted protein XP_001383000.2 1155435 R 322104 CDS PICST_70016 150863830 4837190 1158455..1160371 1 NC_009042.1 predicted protein 1160371 4837190 PICST_70016 Pichia stipitis CBS 6054 predicted protein XP_001382439.2 1158455 D 322104 CDS PICST_87507 150864257 4837365 complement(join(1162355..1168686,1168726..1170064)) 1 NC_009042.1 Identified in a hunt for mutants that activate OCH1 transcription Cell morphogenesis protein PAG1; transcriptional activator leucine zipper 1170064 TAO3 4837365 TAO3 Pichia stipitis CBS 6054 transcriptional activator leucine zipper XP_001383001.2 1162355 R 322104 CDS PICST_54238 150863831 4836890 1172601..1175891 1 NC_009042.1 predicted protein 1175891 4836890 PICST_54238 Pichia stipitis CBS 6054 predicted protein XP_001382440.2 1172601 D 322104 CDS PICST_29791 150864258 4836935 complement(1176015..1176587) 1 NC_009042.1 predicted protein 1176587 4836935 PICST_29791 Pichia stipitis CBS 6054 predicted protein XP_001383002.2 1176015 R 322104 CDS PICST_40664 126131832 4837587 1178148..1178531 1 NC_009042.1 go_function: sterol carrier activity; Oleate-induced peroxisomal protein POX18 (Lipid-transfer protein) (PXP-18) 1178531 PXP18 4837587 PXP18 Pichia stipitis CBS 6054 Oleate-induced peroxisomal protein POX18 (Lipid-transfer protein) (PXP-18) XP_001382441.1 1178148 D 322104 CDS PICST_42375 150863832 4836757 1179135..1179920 1 NC_009042.1 predicted protein 1179920 4836757 PICST_42375 Pichia stipitis CBS 6054 predicted protein XP_001382442.2 1179135 D 322104 CDS PICST_29794 126132956 4837302 complement(join(1180190..1180562,1180690..1180700)) 1 NC_009042.1 predicted protein 1180700 4837302 PICST_29794 Pichia stipitis CBS 6054 predicted protein XP_001383003.1 1180190 R 322104 CDS PICST_29795 150863833 4836644 1181093..1185508 1 NC_009042.1 regulator of V-ATPase 1185508 RAV1 4836644 RAV1 Pichia stipitis CBS 6054 regulator of V-ATPase XP_001382443.2 1181093 D 322104 CDS PICST_42519 150864259 4837546 complement(1185631..1186221) 1 NC_009042.1 predicted protein 1186221 4837546 PICST_42519 Pichia stipitis CBS 6054 predicted protein XP_001383004.2 1185631 R 322104 CDS PICST_29797 126132960 4837045 complement(1186881..1187348) 1 NC_009042.1 predicted protein 1187348 4837045 PICST_29797 Pichia stipitis CBS 6054 predicted protein XP_001383005.1 1186881 R 322104 CDS PICST_81376 150863834 4837338 join(1191490..1191568,1191614..1195140) 1 NC_009042.1 Ca2+-transporting P-type ATPase strongly induced under oxygen limitation May be involved in depleting cytosol of Ca2+ ions; go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; catalytic activity; go_process: cation transport; metabolism; Ca2+-transporting P-type ATPase 1195140 PMC1 4837338 PMC1 Pichia stipitis CBS 6054 Ca2+-transporting P-type ATPase XP_001382444.2 1191490 D 322104 CDS PICST_55334 150863835 4836947 join(1195777..1196000,1196025..1197324) 1 NC_009042.1 go_function: carboxy-lyase activity; go_process: amino acid metabolism; glutamate decarboxylase 2 1197324 GAD2 4836947 GAD2 Pichia stipitis CBS 6054 glutamate decarboxylase 2 XP_001382445.2 1195777 D 322104 CDS PICST_29800 126131842 4836812 1199675..1201270 1 NC_009042.1 predicted protein 1201270 4836812 PICST_29800 Pichia stipitis CBS 6054 predicted protein XP_001382446.1 1199675 D 322104 CDS PICST_54680 150863836 4837496 join(1201638..1205117,1205154..1205360) 1 NC_009042.1 go_component: nucleus; go_function: nucleic acid binding; predicted protein 1205360 4837496 PICST_54680 Pichia stipitis CBS 6054 predicted protein XP_001382447.2 1201638 D 322104 CDS PICST_82259 150864260 4837642 complement(1205762..1207900) 1 NC_009042.1 Fork head protein homolog 2; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcription factor 1207900 FKH2 4837642 FKH2 Pichia stipitis CBS 6054 transcription factor XP_001383006.2 1205762 R 322104 CDS PICST_81347 150864261 4837089 complement(join(1208878..1209712,1209824..1210239)) 1 NC_009042.1 chromatin binding protein 1210239 SWD1 4837089 SWD1 Pichia stipitis CBS 6054 chromatin binding protein XP_001383007.2 1208878 R 322104 CDS PICST_40322 150863837 4837146 1212550..1213290 1 NC_009042.1 go_component: membrane; go_function: protein carrier activity; go_process: intracellular protein transport; emp24/gp25L/p24 family of membrane trafficking proteins 1213290 ERP1 4837146 ERP1 Pichia stipitis CBS 6054 emp24/gp25L/p24 family of membrane trafficking proteins XP_001382448.2 1212550 D 322104 CDS PICST_82218 150863838 4837187 join(1214015..1214447,1214463..1215409,1215521..1217686,1217705..1218139,1218170..1218196) 1 NC_009042.1 vacuolar sorting protein 1218196 VPS8 4837187 VPS8 Pichia stipitis CBS 6054 vacuolar sorting protein XP_001382449.2 1214015 D 322104 CDS PICST_29806 150863839 4837408 1219124..>1219646 1 NC_009042.1 predicted protein >1219646 4837408 PICST_29806 Pichia stipitis CBS 6054 predicted protein XP_001382450.2 1219124 D 322104 CDS PICST_29807 150863840 4837052 1219781..1222381 1 NC_009042.1 chitin synthase (CHS2); go_function: chitin synthase activity; go_process: chitin biosynthesis; chitin synthase 1222381 CSH8 4837052 CSH8 Pichia stipitis CBS 6054 chitin synthase XP_001382451.2 1219781 D 322104 CDS PICST_87366 126131854 4837157 1226328..1229021 1 NC_009042.1 go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; catalytic activity; go_process: cation transport; metabolism; plasma membrane H+-ATPase 1229021 PMA1 4837157 PMA1 Pichia stipitis CBS 6054 plasma membrane H+-ATPase XP_001382452.1 1226328 D 322104 CDS PICST_66941 150863841 4837292 join(1231658..1231886,1231935..1234090) 1 NC_009042.1 go_function: RNA binding; predicted protein 1234090 4837292 PICST_66941 Pichia stipitis CBS 6054 predicted protein XP_001382453.2 1231658 D 322104 CDS PICST_54094 150863842 4837650 join(<1235443..1235839,1235957..>1237866) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1235839 4837650 PICST_54094 Pichia stipitis CBS 6054 predicted protein XP_001382454.2 <1235443 D 322104 CDS PICST_29811 126131860 4837553 1239009..1240448 1 NC_009042.1 go_component: membrane; predicted protein 1240448 4837553 PICST_29811 Pichia stipitis CBS 6054 predicted protein XP_001382455.1 1239009 D 322104 CDS PICST_41423 126132966 4837237 complement(1240850..1241593) 1 NC_009042.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1241593 4837237 PICST_41423 Pichia stipitis CBS 6054 predicted protein XP_001383008.1 1240850 R 322104 CDS PICST_75957 150863843 4836732 1242220..1243581 1 NC_009042.1 predicted protein 1243581 4836732 PICST_75957 Pichia stipitis CBS 6054 predicted protein XP_001382456.2 1242220 D 322104 CDS PICST_41655 150863844 4837565 join(1244134..1245673,1245743..1246038,1246138..1246428) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1246428 4837565 PICST_41655 Pichia stipitis CBS 6054 predicted protein XP_001382457.2 1244134 D 322104 CDS PICST_42742 150863845 4837049 join(<1249883..1250065,1250282..>1252102) 1 NC_009042.1 predicted protein 1250065 4837049 PICST_42742 Pichia stipitis CBS 6054 predicted protein XP_001382458.2 <1249883 D 322104 CDS PICST_54590 126132968 4836866 complement(1252464..1255169) 1 NC_009042.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 1255169 4836866 PICST_54590 Pichia stipitis CBS 6054 predicted protein XP_001383009.1 1252464 R 322104 CDS PICST_29817 150863846 4836972 1256734..1258128 1 NC_009042.1 predicted protein 1258128 4836972 PICST_29817 Pichia stipitis CBS 6054 predicted protein XP_001382459.2 1256734 D 322104 CDS PICST_29818 126131870 4837445 1259514..1260035 1 NC_009042.1 predicted protein 1260035 4837445 PICST_29818 Pichia stipitis CBS 6054 predicted protein XP_001382460.1 1259514 D 322104 CDS PICST_29819 126131872 4837471 1261726..1262145 1 NC_009042.1 predicted protein 1262145 4837471 PICST_29819 Pichia stipitis CBS 6054 predicted protein XP_001382461.1 1261726 D 322104 CDS PICST_29820 126132970 4836865 complement(1262259..1262783) 1 NC_009042.1 predicted protein 1262783 4836865 PICST_29820 Pichia stipitis CBS 6054 predicted protein XP_001383010.1 1262259 R 322104 CDS PICST_81536 150864262 4837301 complement(join(1263885..1264076,1264191..1264277,1264299..1265827,1265876..1266176)) 1 NC_009042.1 predicted protein 1266176 4837301 PICST_81536 Pichia stipitis CBS 6054 predicted protein XP_001383011.2 1263885 R 322104 CDS PICST_54259 126131874 4837491 1268302..1268817 1 NC_009042.1 go_function: DNA binding; predicted protein 1268817 4837491 PICST_54259 Pichia stipitis CBS 6054 predicted protein XP_001382462.1 1268302 D 322104 CDS PICST_29823 150863847 4837342 1270336..1271622 1 NC_009042.1 predicted protein 1271622 4837342 PICST_29823 Pichia stipitis CBS 6054 predicted protein XP_001382463.2 1270336 D 322104 CDS PICST_29824 126131878 4837228 1272125..1273504 1 NC_009042.1 Actin-like protein ARP9 (Chromatin structure remodeling complex protein ARP9) (SWI/SNF complex component ARP9) 1273504 ARP9 4837228 ARP9 Pichia stipitis CBS 6054 Actin-like protein ARP9 (Chromatin structure remodeling complex protein ARP9) (SWI/SNF complex component ARP9) XP_001382464.1 1272125 D 322104 CDS PICST_56005 150863848 4837358 join(1274321..1274363,1274424..1276540) 1 NC_009042.1 go_function: DNA ligase (ATP) activity; ATP binding; go_process: DNA replication; DNA repair; DNA recombination; predicted protein 1276540 4837358 PICST_56005 Pichia stipitis CBS 6054 predicted protein XP_001382465.2 1274321 D 322104 CDS PICST_81897 126132974 4837385 complement(join(1276600..1276973,1277010..1279041)) 1 NC_009042.1 Glycerol-3-phosphate O-acyltransferase 1 (G-3-P acyltransferase 1) (Dihydroxyacetone phosphate acyltransferase 1) (DHAP-AT 1) (Glycerol-3-phosphate / dihydroxyacetone phosphate acyltransferase 1); go_function: acyltransferase activity; go_process: metabolism; glycerol-3-phosphate O-acyltransferase (GPT1) 1279041 SCT1 4837385 SCT1 Pichia stipitis CBS 6054 glycerol-3-phosphate O-acyltransferase (GPT1) XP_001383012.1 1276600 R 322104 CDS PICST_29827 150864263 4837330 complement(1280084..1280545) 1 NC_009042.1 predicted protein 1280545 4837330 PICST_29827 Pichia stipitis CBS 6054 predicted protein XP_001383013.2 1280084 R 322104 CDS PICST_29828 150863849 4836791 1281240..1284299 1 NC_009042.1 predicted protein 1284299 4836791 PICST_29828 Pichia stipitis CBS 6054 predicted protein XP_001382466.2 1281240 D 322104 CDS PICST_65204 150864264 4837640 complement(join(1284487..1287984,1288072..1288284,1288333..1288431)) 1 NC_009042.1 similar to Snf2p; go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; DNA ATP-dependent helicase 1288431 INO80 4837640 INO80 Pichia stipitis CBS 6054 DNA ATP-dependent helicase XP_001383014.2 1284487 R 322104 CDS PICST_56142 126131884 4837629 1289959..1290282 1 NC_009042.1 go_component: membrane; go_function: molecular function unknown; predicted protein 1290282 4837629 PICST_56142 Pichia stipitis CBS 6054 predicted protein XP_001382467.1 1289959 D 322104 CDS PICST_82366 126132980 4836877 complement(1292486..1293214) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; nucleic acid binding; go_process: protein biosynthesis; predicted protein 1293214 4836877 PICST_82366 Pichia stipitis CBS 6054 predicted protein XP_001383015.1 1292486 R 322104 CDS PICST_75569 150864265 4837665 complement(1293625..1297656) 1 NC_009042.1 go_function: catalytic activity; 5'-phosphoribosylformyl glycinamidine synthetase 1297656 ADE6 4837665 ADE6 Pichia stipitis CBS 6054 5'-phosphoribosylformyl glycinamidine synthetase XP_001383016.2 1293625 R 322104 CDS PICST_29833 150863850 4837195 join(1298406..1298625,1298715..1298962) 1 NC_009042.1 predicted protein 1298962 4837195 PICST_29833 Pichia stipitis CBS 6054 predicted protein XP_001382468.2 1298406 D 322104 CDS PICST_29834 150864266 4836888 complement(1299302..1300903) 1 NC_009042.1 predicted protein 1300903 4836888 PICST_29834 Pichia stipitis CBS 6054 predicted protein XP_001383017.2 1299302 R 322104 CDS PICST_87046 126131888 4837274 1303268..1303714 1 NC_009042.1 go_process: transcription; 16-kDa RNA polymerase subunit (common to polymerases I, II and III) 1303714 RPB8 4837274 RPB8 Pichia stipitis CBS 6054 16-kDa RNA polymerase subunit (common to polymerases I, II and III) XP_001382469.1 1303268 D 322104 CDS PICST_29837 150863851 4837084 join(1304287..1304305,1304388..1304770) 1 NC_009042.1 hypothetical protein 1304770 4837084 PICST_29837 Pichia stipitis CBS 6054 hypothetical protein XP_001382470.2 1304287 D 322104 CDS PICST_29838 150864267 4837128 complement(1305243..1306259) 1 NC_009042.1 hypothetical protein 1306259 4837128 PICST_29838 Pichia stipitis CBS 6054 hypothetical protein XP_001383018.2 1305243 R 322104 CDS PICST_41123 150863852 4837144 join(1307185..1308156,1308223..>1309371) 1 NC_009042.1 mannosyltransferases-like protein 1308156 MNT42 4837144 MNT42 Pichia stipitis CBS 6054 mannosyltransferases-like protein XP_001382471.2 1307185 D 322104 CDS PICST_40866 150863853 4836815 1313647..1315062 1 NC_009042.1 go_function: nucleotidyltransferase activity; go_process: metabolism; UTP-glucose-1-phosphate uridylyltransferase 1315062 UGP1 4836815 UGP1 Pichia stipitis CBS 6054 UTP-glucose-1-phosphate uridylyltransferase XP_001382472.2 1313647 D 322104 CDS PICST_29841 150864268 4836924 complement(join(1315943..1316287,1316339..1316754,1316810..1317533)) 1 NC_009042.1 predicted protein 1317533 4836924 PICST_29841 Pichia stipitis CBS 6054 predicted protein XP_001383019.2 1315943 R 322104 CDS PICST_42457 150863854 4837372 1317984..1319390 1 NC_009042.1 go_process: electron transport; predicted protein 1319390 4837372 PICST_42457 Pichia stipitis CBS 6054 predicted protein XP_001382473.2 1317984 D 322104 CDS PICST_29843 150863855 4836926 1319704..1321113 1 NC_009042.1 dityrosine transporter A (AQR2)(acid, azole) Q(quinidine) Resistance; go_component: integral to membrane; go_function: transporter activity; go_process: transport; dityrosine transporter A(acid, azole) Q(quinidine) Resistance 1321113 DTR1 4836926 DTR1 Pichia stipitis CBS 6054 dityrosine transporter A(acid, azole) Q(quinidine) Resistance XP_001382474.2 1319704 D 322104 CDS PICST_29844 150863856 4837295 1321321..1322943 1 NC_009042.1 predicted protein 1322943 4837295 PICST_29844 Pichia stipitis CBS 6054 predicted protein XP_001382475.2 1321321 D 322104 CDS PICST_76205 126131902 4837528 1323961..1324473 1 NC_009042.1 3-hydroxyanthranilic acid dioxygenase 1324473 BNA1 4837528 BNA1 Pichia stipitis CBS 6054 3-hydroxyanthranilic acid dioxygenase XP_001382476.1 1323961 D 322104 CDS PICST_29846 150864269 4837061 complement(1324734..1325384) 1 NC_009042.1 predicted protein 1325384 4837061 PICST_29846 Pichia stipitis CBS 6054 predicted protein XP_001383020.2 1324734 R 322104 CDS PICST_40463 150863857 4837046 join(1326433..1326668,1326709..1326734,1326872..1327461) 1 NC_009042.1 predicted protein 1327461 4837046 PICST_40463 Pichia stipitis CBS 6054 predicted protein XP_001382477.2 1326433 D 322104 CDS PICST_76093 126131906 4837410 1329536..1330399 1 NC_009042.1 go_component: membrane; go_function: binding; go_process: transport; predicted protein 1330399 4837410 PICST_76093 Pichia stipitis CBS 6054 predicted protein XP_001382478.1 1329536 D 322104 CDS PICST_54809 150864270 4837063 complement(join(<1330732..1332294,1332316..1332802,1332881..1333037,1333119..1333461)) 1 NC_009042.1 predicted protein 1333461 4837063 PICST_54809 Pichia stipitis CBS 6054 predicted protein XP_001383021.2 <1330732 R 322104 CDS PICST_40725 150863858 4836987 1334987..1337863 1 NC_009042.1 go_component: membrane; go_function: serine-type peptidase activity; dipeptidyl-peptidase IV activity; go_process: proteolysis and peptidolysis; predicted protein 1337863 4836987 PICST_40725 Pichia stipitis CBS 6054 predicted protein XP_001382479.2 1334987 D 322104 CDS PICST_55278 150863859 4837632 1338229..1340376 1 NC_009042.1 involved in nuclear export of pre-ribosomes; go_function: molecular function unknown; Nucleolar Complex 2 protein 1340376 NOC2 4837632 NOC2 Pichia stipitis CBS 6054 Nucleolar Complex 2 protein XP_001382480.2 1338229 D 322104 CDS PICST_87861 150864271 4837174 complement(join(1340618..1341317,1341384..1341868,1342079..1342885)) 1 NC_009042.1 Regulator of drug sensitivity DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; putative Fungal transcriptional regulatory protein 1342885 RDS2 4837174 RDS2 Pichia stipitis CBS 6054 putative Fungal transcriptional regulatory protein XP_001383022.2 1340618 R 322104 CDS PICST_24789 150864272 4836970 complement(join(<1344233..1344618,1344649..1345334,1345407..>1345738)) 1 NC_009042.1 go_function: peptidase activity; go_process: proteolysis and peptidolysis; Predicted E3 ubiquitin ligase 1345334 4836970 PICST_24789 Pichia stipitis CBS 6054 Predicted E3 ubiquitin ligase XP_001383023.2 <1344233 R 322104 CDS PICST_87381 126132998 4836780 complement(1346289..1349756) 1 NC_009042.1 go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; DNA-directed RNA polymerase III 1349756 RET1 4836780 RET1 Pichia stipitis CBS 6054 DNA-directed RNA polymerase III XP_001383024.1 1346289 R 322104 CDS PICST_29855 150863860 4837416 1350895..1352442 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; go_process: DNA repair; regulation of transcription, DNA-dependent; RNA polymerase II transcription factor B subunit 2 (RNA polymerase II transcription factor B p52 subunit) (RNA polymerase II transcription factor B 52 kDa subunit) 1352442 TFB2 4837416 TFB2 Pichia stipitis CBS 6054 RNA polymerase II transcription factor B subunit 2 (RNA polymerase II transcription factor B p52 subunit) (RNA polymerase II transcription factor B 52 kDa subunit) XP_001382481.2 1350895 D 322104 CDS PICST_29856 150864273 4836911 complement(1352597..1355272) 1 NC_009042.1 Ribonucleotide reductase (ribonucleoside-diphosphate reductase) large subunit; go_component: ribonucleoside-diphosphate reductase complex; go_function: ribonucleoside-diphosphate reductase activity; go_process: DNA replication; ribonucleoside-diphosphate reductase alpha subunit 1355272 RNR1.1 4836911 RNR1.1 Pichia stipitis CBS 6054 ribonucleoside-diphosphate reductase alpha subunit XP_001383025.2 1352597 R 322104 CDS PICST_29857 126133002 4836779 complement(1356844..1357410) 1 NC_009042.1 predicted protein 1357410 4836779 PICST_29857 Pichia stipitis CBS 6054 predicted protein XP_001383026.1 1356844 R 322104 CDS PICST_54813 150864274 4837023 complement(1358779..>1359123) 1 NC_009042.1 go_function: two-component response regulator activity; DNA binding; go_process: two-component signal transduction system (phosphorelay); regulation of transcription, DNA-dependent; predicted protein >1359123 4837023 PICST_54813 Pichia stipitis CBS 6054 predicted protein XP_001383027.2 1358779 R 322104 CDS PICST_42651 150864275 4837525 complement(1361479..1362945) 1 NC_009042.1 go_function: GTP binding; Mitochondrial GTPase 2 1362945 MTG2 4837525 MTG2 Pichia stipitis CBS 6054 Mitochondrial GTPase 2 XP_001383028.2 1361479 R 322104 CDS PICST_40593 150863861 4837198 1363370..1364707 1 NC_009042.1 go_function: nucleic acid binding; helicase activity; ATP binding; Dead-Box Protein 8, ATP-dependent helicase involved in rRNA processing 1364707 DBP8 4837198 DBP8 Pichia stipitis CBS 6054 Dead-Box Protein 8, ATP-dependent helicase involved in rRNA processing XP_001382482.2 1363370 D 322104 CDS PICST_42758 150864276 4836910 complement(1364878..>1365351) 1 NC_009042.1 predicted protein >1365351 4836910 PICST_42758 Pichia stipitis CBS 6054 predicted protein XP_001383029.2 1364878 R 322104 CDS PICST_40669 150863862 4837324 1365877..1367589 1 NC_009042.1 go_component: nucleus; transcription factor complex; go_function: RNA polymerase II transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcription initiation from RNA polymerase II promoter; Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related factor) (BRF) 1367589 BRF1 4837324 BRF1 Pichia stipitis CBS 6054 Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related factor) (BRF) XP_001382483.2 1365877 D 322104 CDS PICST_82093 150863863 4837583 join(1368086..1369828,1369964..1370368) 1 NC_009042.1 required for normal organization of the actin cytoskeleton and passage through Start; Severe Depolymerization of Actin 1370368 SDA1 4837583 SDA1 Pichia stipitis CBS 6054 Severe Depolymerization of Actin XP_001382484.2 1368086 D 322104 CDS PICST_66957 150864277 4837216 complement(join(1370801..1371378,1371487..1371607)) 1 NC_009042.1 go_process: regulation of transcription, DNA-dependent; high mobility group-like protein 1371607 HMO1 4837216 HMO1 Pichia stipitis CBS 6054 high mobility group-like protein XP_001383030.2 1370801 R 322104 CDS PICST_65214 150863864 4837563 join(1373065..1373533,1373597..1374132) 1 NC_009042.1 Malonyl CoA-acyl carrier protein transacylase (MCT) (bacterial); go_function: transferase activity; go_process: metabolism; Malonyl CoA-acyl carrier protein transacylase (MCT) 1374132 MCT1 4837563 MCT1 Pichia stipitis CBS 6054 Malonyl CoA-acyl carrier protein transacylase (MCT) XP_001382485.2 1373065 D 322104 CDS PICST_88119 150863865 4837008 1374768..1377608 1 NC_009042.1 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formate--tetrahydrofolate ligase; go_function: catalytic activity; formate-tetrahydrofolate ligase activity; ATP binding; go_process: folic acid and derivative biosynthesis; tetrahydrofolate synthase 1377608 ADE3 4837008 ADE3 Pichia stipitis CBS 6054 tetrahydrofolate synthase XP_001382486.2 1374768 D 322104 CDS PICST_13503 126131924 4836893 <1378832..>1379218 1 NC_009042.1 Rhodanese-related sulfurtransferase >1379218 RRS1 4836893 RRS1 Pichia stipitis CBS 6054 Rhodanese-related sulfurtransferase XP_001382487.1 <1378832 D 322104 CDS PICST_35049 150864278 4836913 complement(1379586..1380461) 1 NC_009042.1 predicted protein 1380461 4836913 PICST_35049 Pichia stipitis CBS 6054 predicted protein XP_001383031.2 1379586 R 322104 CDS PICST_40289 150864279 4837501 complement(1381659..1383845) 1 NC_009042.1 ferric reductase transmembrane component (7 domains) (Ferric-chelate reductase); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; ferric reductase transmembrane component (Ferric-chelate reductase) 1383845 FRE1.2 4837501 FRE1.2 Pichia stipitis CBS 6054 ferric reductase transmembrane component (Ferric-chelate reductase) XP_001383032.2 1381659 R 322104 CDS PICST_54152 150864280 4837614 complement(1385277..1386578) 1 NC_009042.1 go_component: membrane; iron permease 1386578 FTH1 4837614 FTH1 Pichia stipitis CBS 6054 iron permease XP_001383033.2 1385277 R 322104 CDS PICST_66961 126131926 4837616 join(1388990..1389022,1389729..1390940) 1 NC_009042.1 beta subunit of succinyl-CoA ligase (synthetase ATP-forming), a mitochondrial enzyme of the TCA cycle; go_function: catalytic activity; go_process: metabolism; succinate--CoA ligase (GDP-forming) beta chain (LSC2) 1390940 LSC2 4837616 LSC2 Pichia stipitis CBS 6054 succinate--CoA ligase (GDP-forming) beta chain (LSC2) XP_001382488.1 1388990 D 322104 CDS PICST_87371 150863866 4836907 1391968..1392741 1 NC_009042.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1392741 4836907 PICST_87371 Pichia stipitis CBS 6054 predicted protein XP_001382489.2 1391968 D 322104 CDS PICST_54133 150864281 4837162 complement(join(1392946..1393388,1393404..1395495)) 1 NC_009042.1 predicted protein 1395495 4837162 PICST_54133 Pichia stipitis CBS 6054 predicted protein XP_001383034.2 1392946 R 322104 CDS PICST_42095 150864282 4836974 complement(1395895..1397853) 1 NC_009042.1 go_function: catalytic activity; Autophagy-related protein 7 (Autophagy-related E1-like activating enzyme ATG7) 1397853 ATG7 4836974 ATG7 Pichia stipitis CBS 6054 Autophagy-related protein 7 (Autophagy-related E1-like activating enzyme ATG7) XP_001383035.2 1395895 R 322104 CDS PICST_70663 126133022 4836827 complement(1398053..1399606) 1 NC_009042.1 predicted protein 1399606 4836827 PICST_70663 Pichia stipitis CBS 6054 predicted protein XP_001383036.1 1398053 R 322104 CDS PICST_40548 150863867 4837132 join(1400419..1400588,1400751..1401948) 1 NC_009042.1 go_function: N-acetyltransferase activity; predicted protein 1401948 4837132 PICST_40548 Pichia stipitis CBS 6054 predicted protein XP_001382490.2 1400419 D 322104 CDS PICST_82104 150863868 4837337 1402243..1403025 1 NC_009042.1 6-phosphogluconolactonase-like protein 1403025 SOL2 4837337 SOL2 Pichia stipitis CBS 6054 6-phosphogluconolactonase-like protein XP_001382491.2 1402243 D 322104 CDS PICST_54649 150863869 4837581 join(1403593..1403987,1404006..1404333) 1 NC_009042.1 predicted protein 1404333 4837581 PICST_54649 Pichia stipitis CBS 6054 predicted protein XP_001382492.2 1403593 D 322104 CDS PICST_29880 150863870 4837584 1409541..1411100 1 NC_009042.1 Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase); glucosyltransferase required for N-linked glycosylation pathway 1411100 ALG6 4837584 ALG6 Pichia stipitis CBS 6054 glucosyltransferase required for N-linked glycosylation pathway XP_001382493.2 1409541 D 322104 CDS PICST_65220 150863871 4837644 join(1412785..1412963,1413039..1413365,1413444..1413675,1413775..1417536) 1 NC_009042.1 go_function: guanyl-nucleotide exchange factor activity; go_process: intracellular signaling cascade; predicted protein 1417536 4837644 PICST_65220 Pichia stipitis CBS 6054 predicted protein XP_001382494.2 1412785 D 322104 CDS PICST_29882 150864283 4837067 complement(1417660..1418118) 1 NC_009042.1 predicted protein 1418118 4837067 PICST_29882 Pichia stipitis CBS 6054 predicted protein XP_001383037.2 1417660 R 322104 CDS PICST_66966 150863872 4837277 1418484..1419536 1 NC_009042.1 predicted protein 1419536 4837277 PICST_66966 Pichia stipitis CBS 6054 predicted protein XP_001382495.2 1418484 D 322104 CDS PICST_41643 150863873 4837090 <1419865..1420707 1 NC_009042.1 predicted protein 1420707 4837090 PICST_41643 Pichia stipitis CBS 6054 predicted protein XP_001382496.2 <1419865 D 322104 CDS PICST_56375 150863874 4837149 1421085..1423196 1 NC_009042.1 predicted protein 1423196 4837149 PICST_56375 Pichia stipitis CBS 6054 predicted protein XP_001382497.2 1421085 D 322104 CDS PICST_55134 126133026 4837006 complement(1423412..1423636) 1 NC_009042.1 go_function: metal ion binding; go_process: metal ion transport; antioxidant and copper/iron homeostasis protein 1423636 ATX1 4837006 ATX1 Pichia stipitis CBS 6054 antioxidant and copper/iron homeostasis protein XP_001383038.1 1423412 R 322104 CDS PICST_66968 150864284 4836916 complement(1424150..1426261) 1 NC_009042.1 predicted protein 1426261 4836916 PICST_66968 Pichia stipitis CBS 6054 predicted protein XP_001383039.2 1424150 R 322104 CDS PICST_40574 150864285 4837379 complement(join(1427565..1429432,1429502..1431779)) 1 NC_009042.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 1431779 4837379 PICST_40574 Pichia stipitis CBS 6054 predicted protein XP_001383040.2 1427565 R 322104 CDS PICST_66969 150863875 4837093 join(1433512..1433985,1434233..1435447) 1 NC_009042.1 Mitotic spindle checkpoint protein BUB3, WD repeat superfamily 1435447 BUB3.2 4837093 BUB3.2 Pichia stipitis CBS 6054 Mitotic spindle checkpoint protein BUB3, WD repeat superfamily XP_001382498.2 1433512 D 322104 CDS PICST_40637 150864286 4837465 complement(1435628..1436098) 1 NC_009042.1 predicted protein 1436098 4837465 PICST_40637 Pichia stipitis CBS 6054 predicted protein XP_001383041.2 1435628 R 322104 CDS PICST_54624 150863876 4837666 <1436359..1437513 1 NC_009042.1 predicted protein 1437513 4837666 PICST_54624 Pichia stipitis CBS 6054 predicted protein XP_001382499.2 <1436359 D 322104 CDS PICST_54065 150864287 4837296 complement(<1437852..>1438976) 1 NC_009042.1 predicted protein >1438976 4837296 PICST_54065 Pichia stipitis CBS 6054 predicted protein XP_001383042.2 <1437852 R 322104 CDS PICST_66970 150864288 4837222 complement(1439315..1445983) 1 NC_009042.1 go_function: nucleotide binding; DNA binding; DNA-directed DNA polymerase activity; 3'-5' exonuclease activity; go_process: DNA replication; DNA-directed DNA polymerase epsilon, catalytic subunit A 1445983 POL2 4837222 POL2 Pichia stipitis CBS 6054 DNA-directed DNA polymerase epsilon, catalytic subunit A XP_001383043.2 1439315 R 322104 CDS PICST_70293 150864289 4836660 complement(1446563..1447567) 1 NC_009042.1 predicted protein 1447567 4836660 PICST_70293 Pichia stipitis CBS 6054 predicted protein XP_001383044.2 1446563 R 322104 CDS PICST_41330 126131950 4837586 1448341..1449759 1 NC_009042.1 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphate glucosyltransferase); go_function: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; go_process: trehalose biosynthesis; Trehalose-6-phosphate synthase 1449759 TPS1 4837586 TPS1 Pichia stipitis CBS 6054 Trehalose-6-phosphate synthase XP_001382500.1 1448341 D 322104 CDS PICST_42172 150864290 4837395 complement(join(1449920..1450730,1450770..>1451545)) 1 NC_009042.1 predicted protein 1450730 4837395 PICST_42172 Pichia stipitis CBS 6054 predicted protein XP_001383045.2 1449920 R 322104 CDS PICST_55534 150864291 4837278 complement(1452552..1453220) 1 NC_009042.1 predicted protein 1453220 4837278 PICST_55534 Pichia stipitis CBS 6054 predicted protein XP_001383046.2 1452552 R 322104 CDS PICST_87235 126131952 4836975 1453980..1454471 1 NC_009042.1 go_component: membrane; proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar ATPase V0 domain subunit c' (17 kDa) 1454471 TFP3 4836975 TFP3 Pichia stipitis CBS 6054 vacuolar ATPase V0 domain subunit c' (17 kDa) XP_001382501.1 1453980 D 322104 CDS PICST_29898 126133044 4837476 complement(join(1454719..1456170,1456267..1456269)) 1 NC_009042.1 transcriptional regulator 1456269 RVB2 4837476 RVB2 Pichia stipitis CBS 6054 transcriptional regulator XP_001383047.1 1454719 R 322104 CDS PICST_35069 126133046 4836864 complement(1456817..1458973) 1 NC_009042.1 go_function: catalytic activity; go_process: metabolism; long-chain fatty acid CoA ligase 1458973 FAA23 4836864 FAA23 Pichia stipitis CBS 6054 long-chain fatty acid CoA ligase XP_001383048.1 1456817 R 322104 CDS PICST_29900 150864292 4837506 complement(join(1459795..1460651,1460694..1460736)) 1 NC_009042.1 predicted protein 1460736 4837506 PICST_29900 Pichia stipitis CBS 6054 predicted protein XP_001383049.2 1459795 R 322104 CDS PICST_11039 150864293 4836649 complement(<1460977..>1462530) 1 NC_009042.1 go_component: membrane; go_process: transport; general amino acid permease >1462530 GAP1.8 4836649 GAP1.8 Pichia stipitis CBS 6054 general amino acid permease XP_001383050.2 <1460977 R 322104 CDS PICST_66973 150864294 4837294 complement(1462777..1465617) 1 NC_009042.1 go_component: 6-phosphofructokinase complex; go_function: 6-phosphofructokinase activity; go_process: glycolysis; 6-phosphofructokinase beta subunit (Phosphofructokinase 2) (Phosphohexokinase) (6PF-1-K beta subunit) (CaPFK2) 1465617 PFK2 4837294 PFK2 Pichia stipitis CBS 6054 6-phosphofructokinase beta subunit (Phosphofructokinase 2) (Phosphohexokinase) (6PF-1-K beta subunit) (CaPFK2) XP_001383051.2 1462777 R 322104 CDS PICST_65224 150863877 4837499 1466958..1468133 1 NC_009042.1 go_component: mitochondrial outer membrane; go_function: voltage-gated ion-selective channel activity; go_process: anion transport; translocase of outer mitochondrial membrane 1468133 TOM40 4837499 TOM40 Pichia stipitis CBS 6054 translocase of outer mitochondrial membrane XP_001382502.2 1466958 D 322104 CDS PICST_29904 150864295 4837560 complement(1468593..1471112) 1 NC_009042.1 Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins Signal transduction mechanisms 1471112 PEA3 4837560 PEA3 Pichia stipitis CBS 6054 Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins Signal transduction mechanisms XP_001383052.2 1468593 R 322104 CDS PICST_35072 150864296 4836897 complement(1472019..1472867) 1 NC_009042.1 Rhomboid family proteins Function unknown 1472867 RBD2 4836897 RBD2 Pichia stipitis CBS 6054 Rhomboid family proteins Function unknown XP_001383053.2 1472019 R 322104 CDS PICST_29906 150864297 4837573 complement(1473629..1474069) 1 NC_009042.1 predicted protein 1474069 4837573 PICST_29906 Pichia stipitis CBS 6054 predicted protein XP_001383054.2 1473629 R 322104 CDS PICST_40723 150863878 4836771 1474607..1475695 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine protein kinase 1475695 STK1 4836771 STK1 Pichia stipitis CBS 6054 serine/threonine protein kinase XP_001382503.2 1474607 D 322104 CDS PICST_81624 150864298 4836994 complement(1476806..1477621) 1 NC_009042.1 beta subunit of translation initiation factor eIF-2; a heterotrimeric GTP-binding protein SUI2 encodes the alpha subunit GCD11 encodes the gamma subunit; go_function: translation initiation factor activity; go_process: translational initiation; eIF2 1477621 SUI3 4836994 SUI3 Pichia stipitis CBS 6054 eIF2 XP_001383055.2 1476806 R 322104 CDS PICST_40417 126133062 4837527 complement(<1478243..1478782) 1 NC_009042.1 YAR1 encodes a 200-amino-acid protein with two ANK repeat motifs and an acidic C terminus rich in PEST-like sequences; ankyrin repeat-containing protein 1478782 YAR1 4837527 YAR1 Pichia stipitis CBS 6054 ankyrin repeat-containing protein XP_001383056.1 <1478243 R 322104 CDS PICST_55575 150863879 4837011 1479070..1482060 1 NC_009042.1 Protein required for cell viability 1482060 4837011 PICST_55575 Pichia stipitis CBS 6054 Protein required for cell viability XP_001382504.2 1479070 D 322104 CDS PICST_42547 126131960 4837186 <1482790..1483722 1 NC_009042.1 go_component: nucleus; go_function: damaged DNA binding; go_process: nucleotide-excision repair; Zn-binding nucleotide exision repairosome 1483722 RAD14 4837186 RAD14 Pichia stipitis CBS 6054 Zn-binding nucleotide exision repairosome XP_001382505.1 <1482790 D 322104 CDS PICST_69965 126131962 4837124 1484404..1486533 1 NC_009042.1 Heat shock protein 90 homolog upregulated at least 20 fold under aerobic conditions; go_function: ATP binding; go_process: protein folding; Heat shock protein 90 homolog 1486533 HSP90 4837124 HSP90 Pichia stipitis CBS 6054 Heat shock protein 90 homolog XP_001382506.1 1484404 D 322104 CDS PICST_56388 150864299 4837450 complement(join(1486785..1487310,1487344..1487849)) 1 NC_009042.1 conserved hypothetical protein 1487849 4837450 PICST_56388 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001383057.2 1486785 R 322104 CDS PICST_54817 150863880 4836832 1489726..1490493 1 NC_009042.1 putative short chain dehydrogenase Glucose/ribitol dehydrogenase; go_function: oxidoreductase activity; go_process: metabolism; putative short chain dehydrogenase 1490493 YKH1.3 4836832 YKH1.3 Pichia stipitis CBS 6054 putative short chain dehydrogenase XP_001382507.2 1489726 D 322104 CDS PICST_40464 126131966 4837266 1490937..1492121 1 NC_009042.1 go_process: phospholipid biosynthesis; alcohol phosphatidyl transferase 1492121 EPT1 4837266 EPT1 Pichia stipitis CBS 6054 alcohol phosphatidyl transferase XP_001382508.1 1490937 D 322104 CDS PICST_54893 150864300 4837000 complement(1493247..1496045) 1 NC_009042.1 conserved hypothetical protein; Factor arrest protein 11 1496045 FAR11 4837000 FAR11 Pichia stipitis CBS 6054 Factor arrest protein 11 XP_001383058.2 1493247 R 322104 CDS PICST_29917 150864301 4837123 complement(1496390..1498099) 1 NC_009042.1 predicted protein 1498099 4837123 PICST_29917 Pichia stipitis CBS 6054 predicted protein XP_001383059.2 1496390 R 322104 CDS PICST_35082 126131968 4837663 join(1499276..1499504,1499604..1499944) 1 NC_009042.1 predicted protein 1499944 4837663 PICST_35082 Pichia stipitis CBS 6054 predicted protein XP_001382509.1 1499276 D 322104 CDS PICST_65227 150864302 4837125 complement(join(1500081..1500346,1500395..1501118)) 1 NC_009042.1 protein tyrosine phosphatase 1501118 TEP1 4837125 TEP1 Pichia stipitis CBS 6054 protein tyrosine phosphatase XP_001383060.2 1500081 R 322104 CDS PICST_81748 150864303 4836808 complement(join(1501874..1503492,1503565..1503703)) 1 NC_009042.1 mitochondrial outer membrane specialized import receptor 1503703 TOM70 4836808 TOM70 Pichia stipitis CBS 6054 mitochondrial outer membrane specialized import receptor XP_001383061.2 1501874 R 322104 CDS PICST_81679 150864304 4836699 complement(join(1504466..1506198,1506211..1506391)) 1 NC_009042.1 hypothetical protein 1506391 4836699 PICST_81679 Pichia stipitis CBS 6054 hypothetical protein XP_001383062.2 1504466 R 322104 CDS PICST_54718 126131970 4836809 1507684..1508022 1 NC_009042.1 go_process: protein folding; FK506 binding protein proline rotamase rapamycin-binding protein 1508022 FPR1 4836809 FPR1 Pichia stipitis CBS 6054 FK506 binding protein proline rotamase rapamycin-binding protein XP_001382510.1 1507684 D 322104 CDS PICST_40974 150864305 4837474 complement(1508243..1511845) 1 NC_009042.1 conserved hypothetical protein 1511845 4837474 PICST_40974 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001383063.2 1508243 R 322104 CDS PICST_56464 150863881 4836872 join(1512256..1512507,1512538..1512939) 1 NC_009042.1 predicted protein 1512939 4836872 PICST_56464 Pichia stipitis CBS 6054 predicted protein XP_001382511.2 1512256 D 322104 CDS PICST_56436 150863882 4837291 join(1517483..1517616,1517638..1517712,1517728..1518817) 1 NC_009042.1 hypothetical protein 1518817 4837291 PICST_56436 Pichia stipitis CBS 6054 hypothetical protein XP_001382512.2 1517483 D 322104 CDS PICST_29927 150864306 4837050 complement(1518987..1519529) 1 NC_009042.1 predicted protein 1519529 4837050 PICST_29927 Pichia stipitis CBS 6054 predicted protein XP_001383064.2 1518987 R 322104 CDS PICST_54497 126133080 4836796 complement(join(1520039..1520260,1520316..>1520537)) 1 NC_009042.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein 1520260 4836796 PICST_54497 Pichia stipitis CBS 6054 predicted protein XP_001383065.1 1520039 R 322104 CDS PICST_29929 150863883 4836997 1521557..1522273 1 NC_009042.1 predicted protein 1522273 4836997 PICST_29929 Pichia stipitis CBS 6054 predicted protein XP_001382513.2 1521557 D 322104 CDS PICST_29930 150863884 4837404 join(1523885..1525487,1525704..1525828) 1 NC_009042.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; predicted protein 1525828 4837404 PICST_29930 Pichia stipitis CBS 6054 predicted protein XP_001382514.2 1523885 D 322104 CDS PICST_54188 126133082 4836765 complement(<1525801..>1526838) 1 NC_009042.1 predicted protein >1526838 4836765 PICST_54188 Pichia stipitis CBS 6054 predicted protein XP_001383066.1 <1525801 R 322104 CDS PICST_35091 150863885 4837626 join(1528548..1530591,1530652..1530773) 1 NC_009042.1 go_function: protein transporter activity; go_process: protein secretion; predicted protein 1530773 4837626 PICST_35091 Pichia stipitis CBS 6054 predicted protein XP_001382515.2 1528548 D 322104 CDS PICST_70510 150863886 4837299 1531699..1536348 1 NC_009042.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 1536348 4837299 PICST_70510 Pichia stipitis CBS 6054 predicted protein XP_001382516.2 1531699 D 322104 CDS PICST_56344 150864307 4837062 complement(1536439..1537776) 1 NC_009042.1 WDR repeat protein putative Transfer RNA methyltransferase 1537776 WDR4 4837062 WDR4 Pichia stipitis CBS 6054 WDR repeat protein putative Transfer RNA methyltransferase XP_001383067.2 1536439 R 322104 CDS PICST_81447 150864308 4836708 complement(join(1538030..1539689,1539726..1539852,1539985..1540011,1540069..1540150)) 1 NC_009042.1 predicted protein 1540150 4836708 PICST_81447 Pichia stipitis CBS 6054 predicted protein XP_001383068.2 1538030 R 322104 CDS PICST_65232 150863887 4837606 1541142..1541726 1 NC_009042.1 predicted protein 1541726 4837606 PICST_65232 Pichia stipitis CBS 6054 predicted protein XP_001382517.2 1541142 D 322104 CDS PICST_87511 126131986 4837551 1542831..1543319 1 NC_009042.1 go_process: protein folding; predicted protein 1543319 4837551 PICST_87511 Pichia stipitis CBS 6054 predicted protein XP_001382518.1 1542831 D 322104 CDS PICST_29937 150863888 4836645 1544645..1545538 1 NC_009042.1 predicted protein 1545538 4836645 PICST_29937 Pichia stipitis CBS 6054 predicted protein XP_001382519.2 1544645 D 322104 CDS PICST_29938 150864309 4837558 complement(1546427..1548349) 1 NC_009042.1 predicted protein 1548349 4837558 PICST_29938 Pichia stipitis CBS 6054 predicted protein XP_001383069.2 1546427 R 322104 CDS PICST_66987 126133090 4837596 complement(1548648..1549361) 1 NC_009042.1 protein that interacts with Nap1, which is involved in histone assembly 1549361 NBP2 4837596 NBP2 Pichia stipitis CBS 6054 protein that interacts with Nap1, which is involved in histone assembly XP_001383070.1 1548648 R 322104 CDS PICST_87441 126131990 4837572 1550115..1550861 1 NC_009042.1 predicted protein 1550861 4837572 PICST_87441 Pichia stipitis CBS 6054 predicted protein XP_001382520.1 1550115 D 322104 CDS PICST_29941 126133092 4837087 complement(1552811..1553659) 1 NC_009042.1 hypothetical protein 1553659 4837087 PICST_29941 Pichia stipitis CBS 6054 hypothetical protein XP_001383071.1 1552811 R 322104 CDS PICST_76243 126133094 4837542 complement(1557777..1558100) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: translational elongation; predicted protein 1558100 4837542 PICST_76243 Pichia stipitis CBS 6054 predicted protein XP_001383072.1 1557777 R 322104 CDS PICST_55368 126133096 4837534 complement(join(1558594..1559247,1559263..1559412)) 1 NC_009042.1 go_component: mitochondrial matrix; mitochondrial acidic matrix protein 1559412 MAM33 4837534 MAM33 Pichia stipitis CBS 6054 mitochondrial acidic matrix protein XP_001383073.1 1558594 R 322104 CDS PICST_82085 150864310 4837504 complement(join(1559894..1560831,1560877..1560892)) 1 NC_009042.1 go_component: nucleus; go_process: regulation of cell cycle; B-type cyclin 1560892 CLB4 4837504 CLB4 Pichia stipitis CBS 6054 B-type cyclin XP_001383074.2 1559894 R 322104 CDS PICST_75931 126133100 4837486 complement(<1561172..1561465) 1 NC_009042.1 predicted protein 1561465 4837486 PICST_75931 Pichia stipitis CBS 6054 predicted protein XP_001383075.1 <1561172 R 322104 CDS PICST_29945 150864311 4836858 complement(1564615..1565217) 1 NC_009042.1 predicted protein 1565217 4836858 PICST_29945 Pichia stipitis CBS 6054 predicted protein XP_001383076.2 1564615 R 322104 CDS PICST_29946 126131992 4836826 1567548..1567919 1 NC_009042.1 go_function: zinc ion binding; predicted protein 1567919 4836826 PICST_29946 Pichia stipitis CBS 6054 predicted protein XP_001382521.1 1567548 D 322104 CDS PICST_29947 150863889 4837475 1568955..1569815 1 NC_009042.1 predicted protein 1569815 4837475 PICST_29947 Pichia stipitis CBS 6054 predicted protein XP_001382522.2 1568955 D 322104 CDS PICST_29948 150863890 4837145 1570172..1571494 1 NC_009042.1 predicted protein 1571494 4837145 PICST_29948 Pichia stipitis CBS 6054 predicted protein XP_001382523.2 1570172 D 322104 CDS PICST_65236 150863891 4836721 join(1572150..1572289,1572377..1572930,1573126..1573199) 1 NC_009042.1 predicted protein 1573199 4836721 PICST_65236 Pichia stipitis CBS 6054 predicted protein XP_001382524.2 1572150 D 322104 CDS PICST_35101 150864312 4837239 complement(1574474..1575142) 1 NC_009042.1 go_component: integral to membrane; go_process: intracellular protein transport; predicted protein 1575142 4837239 PICST_35101 Pichia stipitis CBS 6054 predicted protein XP_001383077.2 1574474 R 322104 CDS PICST_54544 150863892 4836939 <1575621..1576466 1 NC_009042.1 predicted protein 1576466 4836939 PICST_54544 Pichia stipitis CBS 6054 predicted protein XP_001382525.2 <1575621 D 322104 CDS PICST_41017 126133106 4837403 complement(1577657..1578205) 1 NC_009042.1 Iron binding protein involved in Fe-S cluster formation Iron sulfur cluster assembly protein 1, mitochondrial precursor (Iron sulfur cluster scaffold protein 1); Iron sulfur cluster assembly protein 1, mitochondrial precursor (Iron sulfur cluster scaffold protein 1) 1578205 ISU1 4837403 ISU1 Pichia stipitis CBS 6054 Iron sulfur cluster assembly protein 1, mitochondrial precursor (Iron sulfur cluster scaffold protein 1) XP_001383078.1 1577657 R 322104 CDS PICST_54648 150864313 4836944 complement(1578934..1579827) 1 NC_009042.1 go_function: oxidoreductase activity; go_process: metabolism; 1-Acyl dihydroxyacetone phosphate reductase 1579827 AYR1 4836944 AYR1 Pichia stipitis CBS 6054 1-Acyl dihydroxyacetone phosphate reductase XP_001383079.2 1578934 R 322104 CDS PICST_29954 150864314 4836949 complement(1580760..1581218) 1 NC_009042.1 predicted protein 1581218 4836949 PICST_29954 Pichia stipitis CBS 6054 predicted protein XP_001383080.2 1580760 R 322104 CDS PICST_55178 150863893 4836958 join(1582350..1582632,1582675..1585521,1585558..1586139,1586206..1586414) 1 NC_009042.1 MMAP can rescue MHP1 null mutant; similar to mammalian MAP4 proteins; microtubule-associated protein (MAP) 1586414 HMP1 4836958 HMP1 Pichia stipitis CBS 6054 microtubule-associated protein (MAP) XP_001382526.2 1582350 D 322104 CDS PICST_76097 126133112 4837373 complement(1586592..1587485) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1587485 4837373 PICST_76097 Pichia stipitis CBS 6054 predicted protein XP_001383081.1 1586592 R 322104 CDS PICST_87669 126132004 4837037 1588859..1590136 1 NC_009042.1 nicotinate phosphoribosyl transferase NAD(+) salvage pathway; go_function: nicotinate phosphoribosyltransferase activity; go_process: pyridine nucleotide biosynthesis; nicotinate phosphoribosyltransferase 1590136 NPT1 4837037 NPT1 Pichia stipitis CBS 6054 nicotinate phosphoribosyltransferase XP_001382527.1 1588859 D 322104 CDS PICST_87941 150863894 4837575 1590469..1593429 1 NC_009042.1 go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; predicted protein 1593429 4837575 PICST_87941 Pichia stipitis CBS 6054 predicted protein XP_001382528.2 1590469 D 322104 CDS PICST_55136 150863895 4837161 1593689..1594588 1 NC_009042.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1594588 4837161 PICST_55136 Pichia stipitis CBS 6054 predicted protein XP_001382529.2 1593689 D 322104 CDS PICST_87680 150864315 4837185 complement(1594863..1596815) 1 NC_009042.1 most similar to Escherichia coli DnaK protein; acts as a chaperone for protein import across the inner membrane subunit of Endo.SceI endonuclease; Nuclear-encoded mitochondrial protein member of the heat shock protein 70 (HSP70) family 1596815 SSC1.1 4837185 SSC1.1 Pichia stipitis CBS 6054 Nuclear-encoded mitochondrial protein member of the heat shock protein 70 (HSP70) family XP_001383082.2 1594863 R 322104 CDS PICST_29961 150864316 4837041 complement(1597428..1599317) 1 NC_009042.1 predicted protein 1599317 4837041 PICST_29961 Pichia stipitis CBS 6054 predicted protein XP_001383083.2 1597428 R 322104 CDS PICST_12788 150863896 4837103 1599527..>1600318 1 NC_009042.1 predicted protein >1600318 4837103 PICST_12788 Pichia stipitis CBS 6054 predicted protein XP_001382530.2 1599527 D 322104 CDS PICST_88102 150864317 4837440 complement(1600501..1601025) 1 NC_009042.1 predicted protein 1601025 4837440 PICST_88102 Pichia stipitis CBS 6054 predicted protein XP_001383084.2 1600501 R 322104 CDS PICST_29964 150863897 4837109 1601460..1602704 1 NC_009042.1 predicted protein 1602704 4837109 PICST_29964 Pichia stipitis CBS 6054 predicted protein XP_001382531.2 1601460 D 322104 CDS PICST_41822 150863898 4836965 1607364..1607822 1 NC_009042.1 predicted protein 1607822 4836965 PICST_41822 Pichia stipitis CBS 6054 predicted protein XP_001382532.2 1607364 D 322104 CDS PICST_40760 150863899 4837331 1608135..>1609340 1 NC_009042.1 Nucleosome remodeling factor, subunit; subunit of histone acetyltransferase >1609340 HAT3 4837331 HAT3 Pichia stipitis CBS 6054 subunit of histone acetyltransferase XP_001382533.2 1608135 D 322104 CDS PICST_35111 150863900 4837452 join(1610062..1611031,1611140..1611180) 1 NC_009042.1 go_process: base-excision repair; 8-oxoguanine DNA glycosylase 1611180 OGG1 4837452 OGG1 Pichia stipitis CBS 6054 8-oxoguanine DNA glycosylase XP_001382534.2 1610062 D 322104 CDS PICST_29969 150863901 4836971 1611931..1613424 1 NC_009042.1 highly conserved MFS family transporter multidrug-resistance type transporter (MFS2) (ATR2); multidrug-resistance type transporter 1613424 ATR3 4836971 ATR3 Pichia stipitis CBS 6054 multidrug-resistance type transporter XP_001382535.2 1611931 D 322104 CDS PICST_87949 150863902 4837435 1614748..1616592 1 NC_009042.1 predicted protein 1616592 4837435 PICST_87949 Pichia stipitis CBS 6054 predicted protein XP_001382536.2 1614748 D 322104 CDS PICST_35114 126132024 4837659 1616973..1617692 1 NC_009042.1 predicted protein 1617692 4837659 PICST_35114 Pichia stipitis CBS 6054 predicted protein XP_001382537.1 1616973 D 322104 CDS PICST_75817 150864318 4837281 complement(1617976..1619703) 1 NC_009042.1 histidinol and sodium permease homologous to ScHOL1 (HOL1); histidinol and sodium permease 1619703 HOL11 4837281 HOL11 Pichia stipitis CBS 6054 histidinol and sodium permease XP_001383085.2 1617976 R 322104 CDS PICST_55080 150863903 4837116 1620946..>1621803 1 NC_009042.1 predicted protein >1621803 4837116 PICST_55080 Pichia stipitis CBS 6054 predicted protein XP_001382538.2 1620946 D 322104 CDS PICST_76085 126132028 4837556 1623801..1624715 1 NC_009042.1 go_component: membrane; go_function: binding; go_process: transport; mitochondrial phosphate transport protein 1624715 MIR1 4837556 MIR1 Pichia stipitis CBS 6054 mitochondrial phosphate transport protein XP_001382539.1 1623801 D 322104 CDS PICST_54802 150863904 4836741 1626116..1626649 1 NC_009042.1 predicted protein 1626649 4836741 PICST_54802 Pichia stipitis CBS 6054 predicted protein XP_001382540.2 1626116 D 322104 CDS PICST_54890 150864319 4837391 complement(1626731..1627645) 1 NC_009042.1 predicted protein 1627645 4837391 PICST_54890 Pichia stipitis CBS 6054 predicted protein XP_001383086.2 1626731 R 322104 CDS PICST_29977 150864320 4837178 complement(1628861..1629772) 1 NC_009042.1 predicted protein 1629772 4837178 PICST_29977 Pichia stipitis CBS 6054 predicted protein XP_001383087.2 1628861 R 322104 CDS PICST_40538 126132032 4837179 1631232..>1631741 1 NC_009042.1 DNA-directed RNA polymerase I subunit A34 >1631741 RPS34 4837179 RPS34 Pichia stipitis CBS 6054 DNA-directed RNA polymerase I subunit A34 XP_001382541.1 1631232 D 322104 CDS PICST_42239 150863905 4836656 1632298..1633209 1 NC_009042.1 hypothetical protein 1633209 4836656 PICST_42239 Pichia stipitis CBS 6054 hypothetical protein XP_001382542.2 1632298 D 322104 CDS PICST_29980 150863906 4836884 1633544..1634281 1 NC_009042.1 predicted protein 1634281 4836884 PICST_29980 Pichia stipitis CBS 6054 predicted protein XP_001382543.2 1633544 D 322104 CDS PICST_69833 150863907 4837667 join(1634948..1635978,1636039..1638175,1638239..>1638688) 1 NC_009042.1 predicted protein 1638175 4837667 PICST_69833 Pichia stipitis CBS 6054 predicted protein XP_001382544.2 1634948 D 322104 CDS PICST_70266 150863908 4837578 1640852..1642006 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1642006 4837578 PICST_70266 Pichia stipitis CBS 6054 predicted protein XP_001382545.2 1640852 D 322104 CDS PICST_29983 150864321 4836806 complement(1642385..1644406) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Protein kinase homolog, mutant is salt and pH sensitive 1644406 HAL5 4836806 HAL5 Pichia stipitis CBS 6054 Protein kinase homolog, mutant is salt and pH sensitive XP_001383088.2 1642385 R 322104 CDS PICST_82371 150863909 4837231 join(1645759..1646829,1646866..1648302) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1648302 4837231 PICST_82371 Pichia stipitis CBS 6054 predicted protein XP_001382546.2 1645759 D 322104 CDS PICST_67007 150864322 4836983 complement(join(1651880..1653873,1653924..1653927)) 1 NC_009042.1 Gluconate transport-inducing protein required for gluconate-H+ symport 1653927 TOS9 4836983 TOS9 Pichia stipitis CBS 6054 Gluconate transport-inducing protein required for gluconate-H+ symport XP_001383089.2 1651880 R 322104 CDS PICST_55239 150863910 4837251 join(1658817..1659012,1659046..1661000) 1 NC_009042.1 predicted protein 1661000 4837251 PICST_55239 Pichia stipitis CBS 6054 predicted protein XP_001382547.2 1658817 D 322104 CDS PICST_41758 150863911 4836984 join(1661496..1661555,1661631..1662353) 1 NC_009042.1 go_component: transcription factor TFIIE complex; go_function: RNA polymerase II transcription factor activity; go_process: transcription initiation from RNA polymerase II promoter; predicted protein 1662353 4836984 PICST_41758 Pichia stipitis CBS 6054 predicted protein XP_001382548.2 1661496 D 322104 CDS PICST_70878 126132048 4837272 join(1662651..1662657,1662767..1663134) 1 NC_009042.1 go_component: intracellular; nucleus; go_function: protein transporter activity; go_process: protein-nucleus import; predicted protein 1663134 4837272 PICST_70878 Pichia stipitis CBS 6054 predicted protein XP_001382549.1 1662651 D 322104 CDS PICST_29989 150863912 4836754 1663367..1665313 1 NC_009042.1 hypothetical protein 1665313 4836754 PICST_29989 Pichia stipitis CBS 6054 hypothetical protein XP_001382550.2 1663367 D 322104 CDS PICST_29990 126133130 4837380 complement(1665746..1666207) 1 NC_009042.1 predicted protein 1666207 4837380 PICST_29990 Pichia stipitis CBS 6054 predicted protein XP_001383090.1 1665746 R 322104 CDS PICST_70083 126132052 4837257 1666750..1668429 1 NC_009042.1 type II Golgi membrane protein 1668429 MNN2 4837257 MNN2 Pichia stipitis CBS 6054 type II Golgi membrane protein XP_001382551.1 1666750 D 322104 CDS PICST_41273 150864323 4837138 complement(1706644..1707723) 1 NC_009042.1 go_component: nuclear chromosome; go_process: chromatin remodeling; Chromatin structure remodeling complex protein SFH1 (SNF5 homolog 1) 1707723 SFH1 4837138 SFH1 Pichia stipitis CBS 6054 Chromatin structure remodeling complex protein SFH1 (SNF5 homolog 1) XP_001383091.2 1706644 R 322104 CDS PICST_30000 150864324 4837303 complement(1708384..1709361) 1 NC_009042.1 go_function: zinc ion binding; hydrolase activity; tRNA-specific adenosine-34 deaminase subunit 1709361 TAD3 4837303 TAD3 Pichia stipitis CBS 6054 tRNA-specific adenosine-34 deaminase subunit XP_001383092.2 1708384 R 322104 CDS PICST_30002 150864325 4837319 complement(1712077..1714146) 1 NC_009042.1 Bud site selection protein BUD6 (Actin interacting protein 3); bud site selection protein 1714146 BUD6 4837319 BUD6 Pichia stipitis CBS 6054 bud site selection protein XP_001383093.2 1712077 R 322104 CDS PICST_69854 150864326 4837348 complement(1714349..1717621) 1 NC_009042.1 karyopherin-beta; Karyopherin Functions in nuclear transport of proteins 1717621 PSE1 4837348 PSE1 Pichia stipitis CBS 6054 Karyopherin Functions in nuclear transport of proteins XP_001383094.2 1714349 R 322104 CDS PICST_81735 126133140 4837354 complement(1717921..1719024) 1 NC_009042.1 go_function: GTP binding; predicted protein 1719024 4837354 PICST_81735 Pichia stipitis CBS 6054 predicted protein XP_001383095.1 1717921 R 322104 CDS PICST_82202 126132054 4837417 join(1719235..1719328,1719365..1722264) 1 NC_009042.1 go_function: GTP binding; go_process: protein biosynthesis; predicted protein 1722264 4837417 PICST_82202 Pichia stipitis CBS 6054 predicted protein XP_001382552.1 1719235 D 322104 CDS PICST_76226 126132056 4836923 1722578..1722964 1 NC_009042.1 predicted protein 1722964 4836923 PICST_76226 Pichia stipitis CBS 6054 predicted protein XP_001382553.1 1722578 D 322104 CDS PICST_55335 126132058 4837405 1723596..1724522 1 NC_009042.1 go_function: 4-nitrophenylphosphatase activity; alkaline phosphatase activity; go_process: dephosphorylation; histone modification; histone dephosphorylation; p-nitrophenyl phosphatase 1724522 PHO13 4837405 PHO13 Pichia stipitis CBS 6054 p-nitrophenyl phosphatase XP_001382554.1 1723596 D 322104 CDS PICST_40734 126132060 4837548 1725444..1725947 1 NC_009042.1 go_function: two-component sensor molecule activity; go_process: two-component signal transduction system (phosphorelay); predicted protein 1725947 4837548 PICST_40734 Pichia stipitis CBS 6054 predicted protein XP_001382555.1 1725444 D 322104 CDS PICST_54322 150864327 4837438 complement(join(1726185..1727665,1727699..>1727903)) 1 NC_009042.1 catalyzes the transfer of mannose from Dol-P-Man to lipid-linked oligosaccharides; mannosyltransferase 1727665 ALG9 4837438 ALG9 Pichia stipitis CBS 6054 mannosyltransferase XP_001383096.2 1726185 R 322104 CDS PICST_30010 126133144 4837424 complement(1728368..1729351) 1 NC_009042.1 Nitrilase, arylacetone-specific (Arylacetonitrilase) (bacterial); go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: nitrogen compound metabolism; Nitrilase, arylacetone-specific (Arylacetonitrilase) 1729351 NRL1 4837424 NRL1 Pichia stipitis CBS 6054 Nitrilase, arylacetone-specific (Arylacetonitrilase) XP_001383097.1 1728368 R 322104 CDS PICST_35133 150864328 4837673 complement(1730476..1731945) 1 NC_009042.1 member of major facilitator superfamily multidrug-resistance protein; major facilitator superfamily multidrug-resistance protein 1731945 HOL42 4837673 HOL42 Pichia stipitis CBS 6054 major facilitator superfamily multidrug-resistance protein XP_001383098.2 1730476 R 322104 CDS PICST_56402 126132062 4837441 <1732573..1733853 1 NC_009042.1 Salicylate hydroxylase (Salicylate 1-monooxygenase) Kynurenine 3-monooxygenase and related flavoprotein monooxygenases; go_function: monooxygenase activity; go_process: aromatic compound metabolism; Salicylate hydroxylase (Salicylate 1-monooxygenase) 1733853 NHG1.2 4837441 NHG1.2 Pichia stipitis CBS 6054 Salicylate hydroxylase (Salicylate 1-monooxygenase) XP_001382556.1 <1732573 D 322104 CDS PICST_55211 126133148 4836966 complement(1734205..1735200) 1 NC_009042.1 predicted protein 1735200 4836966 PICST_55211 Pichia stipitis CBS 6054 predicted protein XP_001383099.1 1734205 R 322104 CDS PICST_30014 126132064 4837371 1735602..1736483 1 NC_009042.1 fumarylacetoacetate hydralase 5-carboxymethyl-2-hydroxymuconate delta-isomerase; go_function: catalytic activity; go_process: metabolism; degradation of aromatic compounds 1736483 FML1 4837371 FML1 Pichia stipitis CBS 6054 degradation of aromatic compounds XP_001382557.1 1735602 D 322104 CDS PICST_41230 126133150 4836909 complement(<1736932..1737255) 1 NC_009042.1 predicted protein 1737255 4836909 PICST_41230 Pichia stipitis CBS 6054 predicted protein XP_001383100.1 <1736932 R 322104 CDS PICST_65252 150864329 4837326 complement(join(1737882..1739548,1739626..1739670,1739855..1740167)) 1 NC_009042.1 putative fungal specific transcriptional regulatory protein; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; putative transcriptional regulatory protein 1740167 FST11 4837326 FST11 Pichia stipitis CBS 6054 putative transcriptional regulatory protein XP_001383101.2 1737882 R 322104 CDS PICST_30016 150864330 4837513 complement(1740620..1742437) 1 NC_009042.1 predicted protein 1742437 4837513 PICST_30016 Pichia stipitis CBS 6054 predicted protein XP_001383102.2 1740620 R 322104 CDS PICST_81567 150864331 4837388 complement(join(1743703..1743904,1743956..1745076)) 1 NC_009042.1 predicted protein 1745076 4837388 PICST_81567 Pichia stipitis CBS 6054 predicted protein XP_001383103.2 1743703 R 322104 CDS PICST_67017 150863913 4837387 1745281..1746642 1 NC_009042.1 predicted protein 1746642 4837387 PICST_67017 Pichia stipitis CBS 6054 predicted protein XP_001382558.2 1745281 D 322104 CDS PICST_54126 126132068 4837564 join(1747158..1747427,1747458..1747643,1747692..1748642) 1 NC_009042.1 conserved hypothetical protein 1748642 4837564 PICST_54126 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001382559.1 1747158 D 322104 CDS PICST_30020 150864332 4836831 complement(1748662..1749876) 1 NC_009042.1 predicted protein 1749876 4836831 PICST_30020 Pichia stipitis CBS 6054 predicted protein XP_001383104.2 1748662 R 322104 CDS PICST_30021 150863914 4836982 1750396..1751040 1 NC_009042.1 go_function: aminoacyl-tRNA hydrolase activity; go_process: protein biosynthesis; predicted protein 1751040 4836982 PICST_30021 Pichia stipitis CBS 6054 predicted protein XP_001382560.2 1750396 D 322104 CDS PICST_40660 150863915 4837306 join(1751607..1751664,1751946..1752341,1752378..1752598) 1 NC_009042.1 predicted protein 1752598 4837306 PICST_40660 Pichia stipitis CBS 6054 predicted protein XP_001382561.2 1751607 D 322104 CDS PICST_55314 150864333 4837290 complement(1752790..1753278) 1 NC_009042.1 predicted protein 1753278 4837290 PICST_55314 Pichia stipitis CBS 6054 predicted protein XP_001383105.2 1752790 R 322104 CDS PICST_30024 150863916 4837285 join(1754144..1754594,1754755..1754756,1754792..1756609) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 1756609 4837285 PICST_30024 Pichia stipitis CBS 6054 predicted protein XP_001382562.2 1754144 D 322104 CDS PICST_81803 150864334 4836709 complement(join(1756715..1758100,1758152..1758636,1758730..1758799,1758872..1759045)) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine-threonine protein kinase 1759045 YAK1 4836709 YAK1 Pichia stipitis CBS 6054 serine-threonine protein kinase XP_001383106.2 1756715 R 322104 CDS PICST_30026 150863917 4837467 1759525..1759881 1 NC_009042.1 predicted protein 1759881 4837467 PICST_30026 Pichia stipitis CBS 6054 predicted protein XP_001382563.2 1759525 D 322104 CDS PICST_82035 150863918 4837091 1760717..1762786 1 NC_009042.1 Homolog of the human adrenoleukodystrophy transporter forms a heterodimer with Pxa1p of two half ATP-binding cassette transporters in the peroxisome membrane; go_component: membrane; go_function: ATP binding; go_process: transport; Peroxisomal long-chain fatty acid import protein 1 (Peroxisomal ABC transporter 2) 1762786 PXA2 4837091 PXA2 Pichia stipitis CBS 6054 Peroxisomal long-chain fatty acid import protein 1 (Peroxisomal ABC transporter 2) XP_001382564.2 1760717 D 322104 CDS PICST_30028 150863919 4837433 join(1762962..1765036,1765062..1765104) 1 NC_009042.1 predicted protein 1765104 4837433 PICST_30028 Pichia stipitis CBS 6054 predicted protein XP_001382565.2 1762962 D 322104 CDS PICST_54239 150864335 4837053 complement(join(1765295..1766688,1766710..1766881)) 1 NC_009042.1 Sphingosine kinase (SPHK), involved in sphingolipid metabolism Lipid transport and metabolism; go_function: diacylglycerol kinase activity; go_process: protein kinase C activation; Sphingosine kinase, involved in sphingolipid metabolism Lipid transport and metabolism 1766881 SPH1 4837053 SPH1 Pichia stipitis CBS 6054 Sphingosine kinase, involved in sphingolipid metabolism Lipid transport and metabolism XP_001383107.2 1765295 R 322104 CDS PICST_30030 150863920 4836638 1767789..1768751 1 NC_009042.1 predicted protein 1768751 4836638 PICST_30030 Pichia stipitis CBS 6054 predicted protein XP_001382566.2 1767789 D 322104 CDS PICST_81390 150864336 4837477 complement(1768902..1771769) 1 NC_009042.1 go_process: regulation of cell cycle; predicted protein 1771769 4837477 PICST_81390 Pichia stipitis CBS 6054 predicted protein XP_001383108.2 1768902 R 322104 CDS PICST_87754 150864337 4837086 complement(1772470..1773876) 1 NC_009042.1 go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; amino acid binding; go_process: L-serine biosynthesis; metabolism; 3-phosphoglycerate dehydrogenase, serine biosynthesis 1773876 SER3 4837086 SER3 Pichia stipitis CBS 6054 3-phosphoglycerate dehydrogenase, serine biosynthesis XP_001383109.2 1772470 R 322104 CDS PICST_67022 150863921 4837668 1776007..1778256 1 NC_009042.1 go_component: microtubule associated complex; go_function: motor activity; ATP binding; predicted protein 1778256 4837668 PICST_67022 Pichia stipitis CBS 6054 predicted protein XP_001382567.2 1776007 D 322104 CDS PICST_30034 150863922 4836689 1779716..1781131 1 NC_009042.1 monocarboxylate permease homolog 1781131 MCH4.2 4836689 MCH4.2 Pichia stipitis CBS 6054 monocarboxylate permease homolog XP_001382568.2 1779716 D 322104 CDS PICST_30035 126133170 4837244 complement(1781196..1782860) 1 NC_009042.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; Lactose permease 1782860 LAC1 4837244 LAC1 Pichia stipitis CBS 6054 Lactose permease XP_001383110.1 1781196 R 322104 CDS PICST_30036 150863923 4837088 join(1783793..1786649,1786707..1786915) 1 NC_009042.1 Beta-galactosidase (Lactase) (BGAL); go_component: beta-galactosidase complex; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; beta-galactosidase activity; go_process: carbohydrate metabolism; Beta-galactosidase (Lactase) 1786915 LAC4 4837088 LAC4 Pichia stipitis CBS 6054 Beta-galactosidase (Lactase) XP_001382569.2 1783793 D 322104 CDS PICST_35148 126133172 4837454 complement(join(1787518..1787723,1787790..1787985)) 1 NC_009042.1 predicted protein 1787985 4837454 PICST_35148 Pichia stipitis CBS 6054 predicted protein XP_001383111.1 1787518 R 322104 CDS PICST_30038 150864338 4836673 complement(1789950..1790390) 1 NC_009042.1 predicted protein 1790390 4836673 PICST_30038 Pichia stipitis CBS 6054 predicted protein XP_001383112.2 1789950 R 322104 CDS PICST_30039 150863924 4837460 1791125..1791997 1 NC_009042.1 predicted protein 1791997 4837460 PICST_30039 Pichia stipitis CBS 6054 predicted protein XP_001382570.2 1791125 D 322104 CDS PICST_56118 126132092 4837057 1792991..1793245 1 NC_009042.1 predicted protein 1793245 4837057 PICST_56118 Pichia stipitis CBS 6054 predicted protein XP_001382571.1 1792991 D 322104 CDS PICST_55173 126133176 4837549 complement(1793650..1794666) 1 NC_009042.1 predicted protein 1794666 4837549 PICST_55173 Pichia stipitis CBS 6054 predicted protein XP_001383113.1 1793650 R 322104 CDS PICST_30042 150864339 4837651 complement(1795305..1797464) 1 NC_009042.1 predicted protein 1797464 4837651 PICST_30042 Pichia stipitis CBS 6054 predicted protein XP_001383114.2 1795305 R 322104 CDS PICST_82137 150864340 4837393 complement(join(1797935..1799858,1799885..1799900,1800022..1800337)) 1 NC_009042.1 Phosphoinositide 3-phosphatase (Yeast myotubularin-related protein 1); myotubularin-related dual specificity phosphatase 1800337 YMR1 4837393 YMR1 Pichia stipitis CBS 6054 myotubularin-related dual specificity phosphatase XP_001383115.2 1797935 R 322104 CDS PICST_54913 150864341 4836748 complement(join(1800872..1801122,1801255..1802605)) 1 NC_009042.1 predicted protein 1802605 4836748 PICST_54913 Pichia stipitis CBS 6054 predicted protein XP_001383116.2 1800872 R 322104 CDS PICST_65256 150864342 4837209 complement(join(1802886..1804479,1804540..1806509)) 1 NC_009042.1 go_process: steroid metabolism; predicted protein 1806509 4837209 PICST_65256 Pichia stipitis CBS 6054 predicted protein XP_001383117.2 1802886 R 322104 CDS PICST_35154 150863925 4837092 1808587..1808961 1 NC_009042.1 predicted protein 1808961 4837092 PICST_35154 Pichia stipitis CBS 6054 predicted protein XP_001382572.2 1808587 D 322104 CDS PICST_55152 150864343 4837439 complement(1809215..1810876) 1 NC_009042.1 mitochondrial protoporphyrinogen oxidase converts protoporphyrinogen IX to protoporphyrin IX (in synthesis of heme); mitochondrial protoporphyrinogen oxidase 1810876 HEM14 4837439 HEM14 Pichia stipitis CBS 6054 mitochondrial protoporphyrinogen oxidase XP_001383118.2 1809215 R 322104 CDS PICST_81668 150864344 4837402 complement(join(<1812055..1813745,1813770..1814674,1814732..1815120)) 1 NC_009042.1 predicted protein 1815120 4837402 PICST_81668 Pichia stipitis CBS 6054 predicted protein XP_001383119.2 <1812055 R 322104 CDS PICST_30049 150864345 4837469 complement(1817256..1818242) 1 NC_009042.1 predicted protein 1818242 4837469 PICST_30049 Pichia stipitis CBS 6054 predicted protein XP_001383120.2 1817256 R 322104 CDS PICST_35157 150864346 4837649 complement(1818758..1819999) 1 NC_009042.1 predicted protein 1819999 4837649 PICST_35157 Pichia stipitis CBS 6054 predicted protein XP_001383121.2 1818758 R 322104 CDS PICST_35158 126132096 4837208 1820731..1821249 1 NC_009042.1 predicted protein 1821249 4837208 PICST_35158 Pichia stipitis CBS 6054 predicted protein XP_001382573.1 1820731 D 322104 CDS PICST_55340 126132098 4836844 join(1821956..1822060,1822160..>1822777) 1 NC_009042.1 go_function: nucleic acid binding; predicted protein 1822060 4836844 PICST_55340 Pichia stipitis CBS 6054 predicted protein XP_001382574.1 1821956 D 322104 CDS PICST_55202 150863926 4837079 <1824277..1826511 1 NC_009042.1 Ferric reductase, NADH/NADPH oxidase transmembrane component (8 domains) 1826511 FRE2.1 4837079 FRE2.1 Pichia stipitis CBS 6054 Ferric reductase, NADH/NADPH oxidase transmembrane component (8 domains) XP_001382575.2 <1824277 D 322104 CDS PICST_35160 150864347 4837631 complement(1826651..1826983) 1 NC_009042.1 predicted protein 1826983 4837631 PICST_35160 Pichia stipitis CBS 6054 predicted protein XP_001383122.2 1826651 R 322104 CDS PICST_55665 150863927 4837150 1827902..1828981 1 NC_009042.1 Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase; mitochondrial protein involved in respiration 1828981 SHY1 4837150 SHY1 Pichia stipitis CBS 6054 mitochondrial protein involved in respiration XP_001382576.2 1827902 D 322104 CDS PICST_81524 150864348 4837130 complement(join(1829438..1830177,1830229..1830427)) 1 NC_009042.1 predicted protein 1830427 4837130 PICST_81524 Pichia stipitis CBS 6054 predicted protein XP_001383123.2 1829438 R 322104 CDS PICST_54569 126132104 4836821 join(<1833133..1833609,1833664..1833939) 1 NC_009042.1 predicted protein 1833939 4836821 PICST_54569 Pichia stipitis CBS 6054 predicted protein XP_001382577.1 <1833133 D 322104 CDS PICST_30058 126132106 4836736 1834235..1835050 1 NC_009042.1 predicted protein 1835050 4836736 PICST_30058 Pichia stipitis CBS 6054 predicted protein XP_001382578.1 1834235 D 322104 CDS PICST_70134 150864349 4836929 complement(1835162..1836742) 1 NC_009042.1 predicted protein 1836742 4836929 PICST_70134 Pichia stipitis CBS 6054 predicted protein XP_001383124.2 1835162 R 322104 CDS PICST_55711 150863928 4837012 1837338..1838675 1 NC_009042.1 Dihydroorotate dehydrogenase, mitochondrial precursor (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD); go_component: membrane; dihydroorotate dehydrogenase 1838675 URA1 4837012 URA1 Pichia stipitis CBS 6054 dihydroorotate dehydrogenase XP_001382579.2 1837338 D 322104 CDS PICST_30061 150863929 4837032 1839432..1840382 1 NC_009042.1 predicted protein 1840382 4837032 PICST_30061 Pichia stipitis CBS 6054 predicted protein XP_001382580.2 1839432 D 322104 CDS PICST_40454 126133200 4836674 complement(1840753..1840917) 1 NC_009042.1 predicted protein 1840917 4836674 PICST_40454 Pichia stipitis CBS 6054 predicted protein XP_001383125.1 1840753 R 322104 CDS PICST_55159 150864350 4837480 complement(join(1841296..1841460,1841497..1841892,1841953..1842130,1842182..>1843065)) 1 NC_009042.1 predicted protein 1842130 4837480 PICST_55159 Pichia stipitis CBS 6054 predicted protein XP_001383126.2 1841296 R 322104 CDS PICST_81319 150863930 4837048 join(1850997..1852417,1852433..1852526) 1 NC_009042.1 uridine kinase converts ATP and uridine to ADP and UMP; go_function: ATP binding; kinase activity; go_process: biosynthesis; uridine kinase 1852526 URK1 4837048 URK1 Pichia stipitis CBS 6054 uridine kinase XP_001382581.2 1850997 D 322104 CDS PICST_67031 150864351 4836967 complement(1853322..1853807) 1 NC_009042.1 predicted protein 1853807 4836967 PICST_67031 Pichia stipitis CBS 6054 predicted protein XP_001383127.2 1853322 R 322104 CDS PICST_70108 126132114 4837335 1856579..1858108 1 NC_009042.1 alanine aminotransferase (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase); go_function: transaminase activity; go_process: biosynthesis; alanine transaminase (ALAM) 1858108 ALA2 4837335 ALA2 Pichia stipitis CBS 6054 alanine transaminase (ALAM) XP_001382582.1 1856579 D 322104 CDS PICST_67034 126132116 4837570 1858711..1859889 1 NC_009042.1 Acetyl-CoA acetyltransferase IA (Peroxisomal acetoacetyl-CoA thiolase) (Thiolase IA) 1859889 THIA 4837570 THIA Pichia stipitis CBS 6054 Acetyl-CoA acetyltransferase IA (Peroxisomal acetoacetyl-CoA thiolase) (Thiolase IA) XP_001382583.1 1858711 D 322104 CDS PICST_40468 150864352 4836942 complement(1860122..1861603) 1 NC_009042.1 succinate semialdehyde dehydrogenase similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (GAPN); go_function: oxidoreductase activity; go_process: metabolism; succinate semialdehyde dehydrogenase NADP+ linked 1861603 UGA2 4836942 UGA2 Pichia stipitis CBS 6054 succinate semialdehyde dehydrogenase NADP+ linked XP_001383128.2 1860122 R 322104 CDS PICST_30070 150863931 4837247 1864433..1865128 1 NC_009042.1 A-agglutinin attachment subunit precursor 1865128 AGA1 4837247 AGA1 Pichia stipitis CBS 6054 A-agglutinin attachment subunit precursor XP_001382584.2 1864433 D 322104 CDS PICST_81787 150863932 4837487 1868361..1869197 1 NC_009042.1 go_component: extracellular region; go_process: cell wall biosynthesis; Cell wall synthesis protein KRE9 precursor 1869197 KRE9 4837487 KRE9 Pichia stipitis CBS 6054 Cell wall synthesis protein KRE9 precursor XP_001382585.2 1868361 D 322104 CDS PICST_30072 150863933 4836750 1869824..1870402 1 NC_009042.1 predicted protein 1870402 4836750 PICST_30072 Pichia stipitis CBS 6054 predicted protein XP_001382586.2 1869824 D 322104 CDS PICST_55948 126132124 4836902 1870981..1872069 1 NC_009042.1 go_function: catalytic activity; arginase 1872069 CAR12 4836902 CAR12 Pichia stipitis CBS 6054 arginase XP_001382587.1 1870981 D 322104 CDS PICST_65263 150863934 4836730 join(1873976..1874177,1874322..1876081) 1 NC_009042.1 go_component: cell wall; glucan synthase subunit involved in cell wall assembly 1876081 KRE7 4836730 KRE7 Pichia stipitis CBS 6054 glucan synthase subunit involved in cell wall assembly XP_001382588.2 1873976 D 322104 CDS PICST_55245 150864353 4837027 complement(join(1876285..1877556,1877650..1878033,1878070..1878273)) 1 NC_009042.1 predicted protein 1878273 4837027 PICST_55245 Pichia stipitis CBS 6054 predicted protein XP_001383129.2 1876285 R 322104 CDS PICST_81403 126133210 4837169 complement(1878509..1879270) 1 NC_009042.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1879270 4837169 PICST_81403 Pichia stipitis CBS 6054 predicted protein XP_001383130.1 1878509 R 322104 CDS PICST_40580 150863935 4836785 1879849..1880316 1 NC_009042.1 predicted protein 1880316 4836785 PICST_40580 Pichia stipitis CBS 6054 predicted protein XP_001382589.2 1879849 D 322104 CDS PICST_30078 150863936 4836663 1880609..1882162 1 NC_009042.1 predicted protein 1882162 4836663 PICST_30078 Pichia stipitis CBS 6054 predicted protein XP_001382590.2 1880609 D 322104 CDS PICST_42365 150864354 4836996 complement(1882210..1883349) 1 NC_009042.1 go_function: cysteine-type peptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1883349 4836996 PICST_42365 Pichia stipitis CBS 6054 predicted protein XP_001383131.2 1882210 R 322104 CDS PICST_67038 150863937 4837530 1883805..1885415 1 NC_009042.1 go_function: metalloexopeptidase activity; peptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1885415 4837530 PICST_67038 Pichia stipitis CBS 6054 predicted protein XP_001382591.2 1883805 D 322104 CDS PICST_41824 126133214 4837212 complement(1885623..1886471) 1 NC_009042.1 predicted protein 1886471 4837212 PICST_41824 Pichia stipitis CBS 6054 predicted protein XP_001383132.1 1885623 R 322104 CDS PICST_67039 150864355 4837021 complement(1887045..1887947) 1 NC_009042.1 predicted protein 1887947 4837021 PICST_67039 Pichia stipitis CBS 6054 predicted protein XP_001383133.2 1887045 R 322104 CDS PICST_40739 150863938 4837637 1889573..1890235 1 NC_009042.1 predicted protein 1890235 4837637 PICST_40739 Pichia stipitis CBS 6054 predicted protein XP_001382592.2 1889573 D 322104 CDS PICST_56468 150864356 4837060 complement(join(<1890740..1893038,1893072..1893198,1893268..1893469)) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal transcriptional regulatory protein 1893469 CTA4 4837060 CTA4 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001383134.2 <1890740 R 322104 CDS PICST_82123 150864357 4837511 complement(join(1895298..1897864,1897907..1897996,1898075..1898261,1898475..1898551,1898846..1899167)) 1 NC_009042.1 Fungal specific transcription factor; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal transcriptional regulatory protein 1899167 FST2 4837511 FST2 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001383135.2 1895298 R 322104 CDS PICST_81861 150864358 4837202 complement(join(1900128..1902368,1902390..1903012,1903058..1903214,1903281..1903547)) 1 NC_009042.1 Fungal specific transcription factor; go_function: DNA binding; zinc ion binding; Fungal transcriptional regulatory protein 1903547 FST3 4837202 FST3 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001383136.2 1900128 R 322104 CDS PICST_41151 150864359 4837582 complement(join(1904710..1905312,1905352..1905750)) 1 NC_009042.1 predicted protein 1905750 4837582 PICST_41151 Pichia stipitis CBS 6054 predicted protein XP_001383137.2 1904710 R 322104 CDS PICST_55002 150864360 4837523 complement(1906392..1908650) 1 NC_009042.1 go_function: catalytic activity; go_process: metabolism; long-chain-fatty-acid--CoA ligase 1908650 FAA24 4837523 FAA24 Pichia stipitis CBS 6054 long-chain-fatty-acid--CoA ligase XP_001383138.2 1906392 R 322104 CDS PICST_56322 150864361 4836883 complement(join(1909939..1910214,1910307..1910339)) 1 NC_009042.1 predicted protein 1910339 4836883 PICST_56322 Pichia stipitis CBS 6054 predicted protein XP_001383139.2 1909939 R 322104 CDS PICST_87156 150863939 4837019 1910967..1912337 1 NC_009042.1 predicted protein 1912337 4837019 PICST_87156 Pichia stipitis CBS 6054 predicted protein XP_001382593.2 1910967 D 322104 CDS PICST_75745 150863940 4837482 1914314..1916401 1 NC_009042.1 go_component: cell wall; glucan synthase subunit involved in cell wall assembly 1916401 KRE8 4837482 KRE8 Pichia stipitis CBS 6054 glucan synthase subunit involved in cell wall assembly XP_001382594.2 1914314 D 322104 CDS PICST_30092 150863941 4837508 1917712..1919238 1 NC_009042.1 flavin-containing monooxygenase 1919238 FMO6 4837508 FMO6 Pichia stipitis CBS 6054 flavin-containing monooxygenase XP_001382595.2 1917712 D 322104 CDS PICST_55076 150863942 4837192 1920021..1921556 1 NC_009042.1 predicted protein 1921556 4837192 PICST_55076 Pichia stipitis CBS 6054 predicted protein XP_001382596.2 1920021 D 322104 CDS PICST_55094 150864362 4836904 complement(1921642..1922625) 1 NC_009042.1 predicted protein 1922625 4836904 PICST_55094 Pichia stipitis CBS 6054 predicted protein XP_001383140.2 1921642 R 322104 CDS PICST_54531 150864363 4837003 complement(<1923039..1924712) 1 NC_009042.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1924712 4837003 PICST_54531 Pichia stipitis CBS 6054 predicted protein XP_001383141.2 <1923039 R 322104 CDS PICST_55837 126133234 4837282 complement(join(1925731..1926104,1926135..1926149,1926177..>1927149)) 1 NC_009042.1 predicted protein 1926149 4837282 PICST_55837 Pichia stipitis CBS 6054 predicted protein XP_001383142.1 1925731 R 322104 CDS PICST_40540 150863943 4836985 1929186..1930451 1 NC_009042.1 predicted protein 1930451 4836985 PICST_40540 Pichia stipitis CBS 6054 predicted protein XP_001382597.2 1929186 D 322104 CDS PICST_67047 150863944 4837466 1932747..1935092 1 NC_009042.1 calcineurin responsive zinc-finger; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 1935092 CRZ1 4837466 CRZ1 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001382598.2 1932747 D 322104 CDS PICST_35181 150863945 4837323 join(1935490..1935792,1935823..1936992) 1 NC_009042.1 Predicted cell surface protein homologous to bacterial outer membrane proteins SAM50-like protein; Predicted cell surface protein homologous to bacterial outer membrane proteins 1936992 SAM52 4837323 SAM52 Pichia stipitis CBS 6054 Predicted cell surface protein homologous to bacterial outer membrane proteins XP_001382599.2 1935490 D 322104 CDS PICST_54534 150864364 4837396 complement(1937111..1938151) 1 NC_009042.1 predicted protein 1938151 4837396 PICST_54534 Pichia stipitis CBS 6054 predicted protein XP_001383143.2 1937111 R 322104 CDS PICST_55838 126132150 4837643 join(1938462..1938488,1938545..1938557,1938619..1938670,1938851..1939050,1939143..1939378) 1 NC_009042.1 go_process: protein folding; predicted protein 1939378 4837643 PICST_55838 Pichia stipitis CBS 6054 predicted protein XP_001382600.1 1938462 D 322104 CDS PICST_54418 150863946 4836885 join(1941210..1942013,1942072..1942075,1942129..1942361) 1 NC_009042.1 predicted protein 1942361 4836885 PICST_54418 Pichia stipitis CBS 6054 predicted protein XP_001382601.2 1941210 D 322104 CDS PICST_41505 150863947 4837126 1943930..>1944991 1 NC_009042.1 go_component: integral to membrane; Longevity-assurance protein 1 (Longevity assurance factor 1) >1944991 LAG1.2 4837126 LAG1.2 Pichia stipitis CBS 6054 Longevity-assurance protein 1 (Longevity assurance factor 1) XP_001382602.2 1943930 D 322104 CDS PICST_30104 150863948 4837142 1945960..1948698 1 NC_009042.1 go_component: microtubule associated complex; go_function: motor activity; ATP binding; predicted protein 1948698 4837142 PICST_30104 Pichia stipitis CBS 6054 predicted protein XP_001382603.2 1945960 D 322104 CDS PICST_67049 150864365 4837623 complement(1948845..1949423) 1 NC_009042.1 predicted protein 1949423 4837623 PICST_67049 Pichia stipitis CBS 6054 predicted protein XP_001383144.2 1948845 R 322104 CDS PICST_81785 150864366 4837165 complement(join(1950644..1950690,1950721..1951843,1951886..1952481,1952707..1952782)) 1 NC_009042.1 chitin synthase regulatory factor 1952782 CHS4 4837165 CHS4 Pichia stipitis CBS 6054 chitin synthase regulatory factor XP_001383145.2 1950644 R 322104 CDS PICST_35186 126133242 4837016 complement(1954795..1955532) 1 NC_009042.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 1955532 4837016 PICST_35186 Pichia stipitis CBS 6054 predicted protein XP_001383146.1 1954795 R 322104 CDS PICST_30108 150864367 4837619 complement(1956234..1957115) 1 NC_009042.1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; methyltransferase 1957115 UBI5 4837619 UBI5 Pichia stipitis CBS 6054 methyltransferase XP_001383147.2 1956234 R 322104 CDS PICST_30109 150863949 4837516 1960119..1961273 1 NC_009042.1 predicted protein 1961273 4837516 PICST_30109 Pichia stipitis CBS 6054 predicted protein XP_001382604.2 1960119 D 322104 CDS PICST_65270 150864368 4837238 complement(1961507..1962931) 1 NC_009042.1 membrane-bound casein kinase I homolog; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; casein kinase I 1962931 YCK2 4837238 YCK2 Pichia stipitis CBS 6054 casein kinase I XP_001383148.2 1961507 R 322104 CDS PICST_30111 126133248 4836696 complement(1965067..1966311) 1 NC_009042.1 taurine catabolism dioxygenase similar to Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; go_function: oxidoreductase activity; go_process: electron transport; taurine catabolism dioxygenase 1966311 TCD5.1 4836696 TCD5.1 Pichia stipitis CBS 6054 taurine catabolism dioxygenase XP_001383149.1 1965067 R 322104 CDS PICST_56049 150864369 4837453 complement(join(1967570..1968329,1968398..1968435)) 1 NC_009042.1 Glutathione S-transferase 1968435 GST3 4837453 GST3 Pichia stipitis CBS 6054 Glutathione S-transferase XP_001383150.2 1967570 R 322104 CDS PICST_35190 126133252 4837383 complement(join(1969102..1969810,1969860..1969888)) 1 NC_009042.1 Glutathione S-transferase Posttranslational modification, protein turnover, chaperones; glutathione S-transferase 1969888 GST1 4837383 GST1 Pichia stipitis CBS 6054 glutathione S-transferase XP_001383151.1 1969102 R 322104 CDS PICST_42470 126132160 4837327 1970907..1972352 1 NC_009042.1 Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly 1972352 NOB1 4837327 NOB1 Pichia stipitis CBS 6054 Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly XP_001382605.1 1970907 D 322104 CDS PICST_35192 150863950 4837446 join(1972770..1973028,1973050..1973135,1973239,1973284..1973847,1973932..1973979,1974043..1974971) 1 NC_009042.1 go_function: calcium ion binding; Increased rDNA silencing protein 1974971 IRS4 4837446 IRS4 Pichia stipitis CBS 6054 Increased rDNA silencing protein XP_001382606.2 1972770 D 322104 CDS PICST_35193 150863951 4836989 1975325..1977298 1 NC_009042.1 Structural maintenance of chromosome protein 3 (SMC3 ) (sister chromatid cohesion complex Cohesin, subunit SMC3) Ploidy-related. Shares homology with PLO1; Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) 1977298 PLO2 4836989 PLO2 Pichia stipitis CBS 6054 Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) XP_001382607.2 1975325 D 322104 CDS PICST_87778 150863952 4836829 1977619..1979430 1 NC_009042.1 go_function: carboxy-lyase activity; go_process: amino acid metabolism; dihydrosphingosine-1-phosphate lyase 1979430 DPL1 4836829 DPL1 Pichia stipitis CBS 6054 dihydrosphingosine-1-phosphate lyase XP_001382608.2 1977619 D 322104 CDS PICST_35195 150863953 4837171 1980043..1981038 1 NC_009042.1 predicted protein 1981038 4837171 PICST_35195 Pichia stipitis CBS 6054 predicted protein XP_001382609.2 1980043 D 322104 CDS PICST_30119 150863954 4837343 1981390..1982634 1 NC_009042.1 hypothetical protein; occurs 10 times in Pichia stipitis; hypothetical protein 1982634 4837343 PICST_30119 Pichia stipitis CBS 6054 hypothetical protein XP_001382610.2 1981390 D 322104 CDS PICST_55556 150863955 4837297 <1987428..1989584 1 NC_009042.1 hypothetical protein 1989584 4837297 PICST_55556 Pichia stipitis CBS 6054 hypothetical protein XP_001382611.2 <1987428 D 322104 CDS PICST_54013 150863956 4837653 join(1990321..1990772,1990806..1991219,1991262..1992482,1992507..1992548,1992612..1992855,1993093..1993148,1993188..1993296) 1 NC_009042.1 hypothetical protein 1993296 4837653 PICST_54013 Pichia stipitis CBS 6054 hypothetical protein XP_001382612.2 1990321 D 322104 CDS PICST_42367 150864370 4837328 complement(join(<1993678..1994883,1994971..>1995090)) 1 NC_009042.1 protein involved in cell cycle control and ion homeostasis 1994883 SIS2.2 4837328 SIS2.2 Pichia stipitis CBS 6054 protein involved in cell cycle control and ion homeostasis XP_001383152.2 <1993678 R 322104 CDS PICST_88081 126132176 4836977 join(2008416..2008617,2008826..2009859) 1 NC_009042.1 go_component: eukaryotic translation elongation factor 1 complex; go_function: translation elongation factor activity; go_process: translational elongation; translation elongation factor eEF1 gamma 2009859 TEF4 4836977 TEF4 Pichia stipitis CBS 6054 translation elongation factor eEF1 gamma XP_001382613.1 2008416 D 322104 CDS PICST_56149 150863957 4837200 2010402..2011514 1 NC_009042.1 predicted protein 2011514 4837200 PICST_56149 Pichia stipitis CBS 6054 predicted protein XP_001382614.2 2010402 D 322104 CDS PICST_75790 126132180 4837069 2012247..2014169 1 NC_009042.1 predicted protein 2014169 4837069 PICST_75790 Pichia stipitis CBS 6054 predicted protein XP_001382615.1 2012247 D 322104 CDS PICST_40343 126132182 4836875 <2015948..>2016157 1 NC_009042.1 go_function: nucleic acid binding; predicted protein >2016157 4836875 PICST_40343 Pichia stipitis CBS 6054 predicted protein XP_001382616.1 <2015948 D 322104 CDS PICST_30129 126133256 4836800 complement(2017974..2018864) 1 NC_009042.1 predicted protein 2018864 4836800 PICST_30129 Pichia stipitis CBS 6054 predicted protein XP_001383153.1 2017974 R 322104 CDS PICST_42410 150863958 4837015 2020258..2021934 1 NC_009042.1 go_function: N-acetyltransferase activity; predicted protein 2021934 4837015 PICST_42410 Pichia stipitis CBS 6054 predicted protein XP_001382617.2 2020258 D 322104 CDS PICST_40600 150864371 4837526 complement(join(2022114..2023476,2023954..>2024183)) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 2023476 4837526 PICST_40600 Pichia stipitis CBS 6054 predicted protein XP_001383154.2 2022114 R 322104 CDS PICST_42338 150863959 4836891 join(2027136..2027289,2027386..2027550,2027596..2028696,2029075..>2032121) 1 NC_009042.1 which is unique in its ability to bypass thymine dimers during replication, is composed of Rev3p and Rev7p; go_function: nucleotide binding; DNA binding; DNA-directed DNA polymerase activity; 3'-5' exonuclease activity; go_process: DNA replication; DNA polymerase zeta 2028696 REV3 4836891 REV3 Pichia stipitis CBS 6054 DNA polymerase zeta XP_001382618.2 2027136 D 322104 CDS PICST_76016 150864372 4836751 complement(2032252..2033385) 1 NC_009042.1 membrane-bound alpha-1,6- mannosyltransferase initiates the polymannose outer chain elongation of N-linked glycans; membrane-bound alpha-1,6- mannosyltransferase Initiation-specific 2033385 OCH1 4836751 OCH1 Pichia stipitis CBS 6054 membrane-bound alpha-1,6- mannosyltransferase Initiation-specific XP_001383155.2 2032252 R 322104 CDS PICST_55603 150864373 4837080 complement(2034677..>2036527) 1 NC_009042.1 ATP-dependent RNA helicase of DEAD box family; suppressor of uncontrolled mitosis; go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent RNA helicase of DEAD box family >2036527 DED1 4837080 DED1 Pichia stipitis CBS 6054 ATP-dependent RNA helicase of DEAD box family XP_001383156.2 2034677 R 322104 CDS PICST_87580 150864374 4836704 complement(2037733..2039460) 1 NC_009042.1 NAD(+) kinase (Unknown transcript 1 protein); go_function: NAD+ kinase activity; go_process: metabolism; NAD kinase associated with ferric reductase 2039460 UTR1 4836704 UTR1 Pichia stipitis CBS 6054 NAD kinase associated with ferric reductase XP_001383157.2 2037733 R 322104 CDS PICST_82228 150864375 4836998 complement(join(2040802..2042122,2042156..2042532)) 1 NC_009042.1 converts nucleoside diphosphates to nucleoside monophosphates to recycle nucleosides and promote transport of additional nucleotide sugars into golgi; go_function: hydrolase activity; golgi guanosine diphosphatase 2042532 GDA1 4836998 GDA1 Pichia stipitis CBS 6054 golgi guanosine diphosphatase XP_001383158.2 2040802 R 322104 CDS PICST_30137 150863960 4837148 2044211..2045527 1 NC_009042.1 hypothetical protein 2045527 4837148 PICST_30137 Pichia stipitis CBS 6054 hypothetical protein XP_001382619.2 2044211 D 322104 CDS PICST_54178 150863961 4836793 join(2046192..2046803,2047179..2048004,2048047..2049762,2049783..2049821,2049841..2049891,2049952..2050184) 1 NC_009042.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; C2H2 zinc finger protein 2050184 4836793 PICST_54178 Pichia stipitis CBS 6054 C2H2 zinc finger protein XP_001382620.2 2046192 D 322104 CDS PICST_70383 126133268 4836664 complement(2050417..2051202) 1 NC_009042.1 Uncharacterized conserved protein related to ribosomal protein S8E killer toxin resistant; go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; Killer toxin Resistant 2051202 NSA2 4836664 NSA2 Pichia stipitis CBS 6054 Killer toxin Resistant XP_001383159.1 2050417 R 322104 CDS PICST_54653 150863962 4836655 2051751..2052797 1 NC_009042.1 predicted protein 2052797 4836655 PICST_54653 Pichia stipitis CBS 6054 predicted protein XP_001382621.2 2051751 D 322104 CDS PICST_70431 126132194 4836669 2053886..2054479 1 NC_009042.1 thiol-specific antioxidant protein; Peroxiredoxin TSA1 2054479 TSA1 4836669 TSA1 Pichia stipitis CBS 6054 Peroxiredoxin TSA1 XP_001382622.1 2053886 D 322104 CDS PICST_56209 150863963 4836641 2055324..2055863 1 NC_009042.1 diadenosine polyphosphate hydrolase 2055863 HNT2 4836641 HNT2 Pichia stipitis CBS 6054 diadenosine polyphosphate hydrolase XP_001382623.2 2055324 D 322104 CDS PICST_55363 150863964 4837647 join(2056294..2056821,2056840..2056939,2057051..2057214) 1 NC_009042.1 go_component: nucleus; go_function: transcription regulator activity; go_process: regulation of transcription; predicted protein 2057214 4837647 PICST_55363 Pichia stipitis CBS 6054 predicted protein XP_001382624.2 2056294 D 322104 CDS PICST_13387 126133270 4837098 complement(<2057570..>2058076) 1 NC_009042.1 go_process: protein folding; predicted protein >2058076 4837098 PICST_13387 Pichia stipitis CBS 6054 predicted protein XP_001383160.1 <2057570 R 322104 CDS PICST_56107 150864376 4837201 complement(2058804..2059637) 1 NC_009042.1 predicted protein 2059637 4837201 PICST_56107 Pichia stipitis CBS 6054 predicted protein XP_001383161.2 2058804 R 322104 CDS PICST_82184 150864377 4837283 complement(join(<2071137..2072832,2072920..2073512)) 1 NC_009042.1 predicted protein 2073512 4837283 PICST_82184 Pichia stipitis CBS 6054 predicted protein XP_001383162.2 <2071137 R 322104 CDS PICST_41834 150864378 4837363 complement(2074280..2075308) 1 NC_009042.1 mitochondrial oxaloacetate transport protein; go_component: membrane; go_function: binding; go_process: transport; Mitochondrial oxaloacetate carrier protein 2075308 OAC1 4837363 OAC1 Pichia stipitis CBS 6054 Mitochondrial oxaloacetate carrier protein XP_001383163.2 2074280 R 322104 CDS PICST_76282 150863965 4837585 2076336..2079476 1 NC_009042.1 predicted protein 2079476 4837585 PICST_76282 Pichia stipitis CBS 6054 predicted protein XP_001382625.2 2076336 D 322104 CDS PICST_55631 126133278 4837366 complement(2079725..2079937) 1 NC_009042.1 predicted protein 2079937 4837366 PICST_55631 Pichia stipitis CBS 6054 predicted protein XP_001383164.1 2079725 R 322104 CDS PICST_65279 126132202 4837082 2080527..2081174 1 NC_009042.1 go_component: membrane; go_function: protein carrier activity; go_process: intracellular protein transport; predicted protein 2081174 4837082 PICST_65279 Pichia stipitis CBS 6054 predicted protein XP_001382626.1 2080527 D 322104 CDS PICST_30152 150864379 4837449 complement(2081382..2083664) 1 NC_009042.1 predicted protein 2083664 4837449 PICST_30152 Pichia stipitis CBS 6054 predicted protein XP_001383165.2 2081382 R 322104 CDS PICST_55636 150864380 4836633 complement(2084047..2084769) 1 NC_009042.1 predicted protein 2084769 4836633 PICST_55636 Pichia stipitis CBS 6054 predicted protein XP_001383166.2 2084047 R 322104 CDS PICST_30154 150863966 4836727 2085093..2086103 1 NC_009042.1 go_function: lyase activity; go_process: amino acid metabolism; predicted protein 2086103 4836727 PICST_30154 Pichia stipitis CBS 6054 predicted protein XP_001382627.2 2085093 D 322104 CDS PICST_56130 150863967 4837072 join(2087258..2087313,2087332..2087690,2087733..2089310,2089392..2089684) 1 NC_009042.1 predicted protein 2089684 4837072 PICST_56130 Pichia stipitis CBS 6054 predicted protein XP_001382628.2 2087258 D 322104 CDS PICST_41120 150863968 4837176 join(<2091234..2091503,2091576..2094425) 1 NC_009042.1 predicted protein 2094425 4837176 PICST_41120 Pichia stipitis CBS 6054 predicted protein XP_001382629.2 <2091234 D 322104 CDS PICST_30157 150864381 4837515 complement(2094537..2098205) 1 NC_009042.1 chromatin remodeling complex ATPase component of a four subunit chromatin remodeling complex; go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; chromatin remodeling complex Adenosinetriphosphatase 2098205 ISW2 4837515 ISW2 Pichia stipitis CBS 6054 chromatin remodeling complex Adenosinetriphosphatase XP_001383167.2 2094537 R 322104 CDS PICST_42190 150864382 4837618 complement(2098985..>2099806) 1 NC_009042.1 predicted protein >2099806 4837618 PICST_42190 Pichia stipitis CBS 6054 predicted protein XP_001383168.2 2098985 R 322104 CDS PICST_56184 150864383 4837076 complement(2100563..2101600) 1 NC_009042.1 subunit of N- oligosaccharyltransferase complex 2101600 OST6 4837076 OST6 Pichia stipitis CBS 6054 subunit of N- oligosaccharyltransferase complex XP_001383169.2 2100563 R 322104 CDS PICST_56066 150864384 4837199 complement(join(2101998..2102839,2102858..2103230)) 1 NC_009042.1 predicted protein 2103230 4837199 PICST_56066 Pichia stipitis CBS 6054 predicted protein XP_001383170.2 2101998 R 322104 CDS PICST_30161 150863969 4837264 join(2104136..2104149,2104342..2105467) 1 NC_009042.1 go_component: intracellular; go_function: DNA binding; endonuclease activity; go_process: DNA repair; predicted protein 2105467 4837264 PICST_30161 Pichia stipitis CBS 6054 predicted protein XP_001382630.2 2104136 D 322104 CDS PICST_42583 150863970 4836889 <2106428..2109283 1 NC_009042.1 Involved in nucleocytoplasmic transport may be required for biogenesis of tRNA; go_component: nuclear pore; go_process: transport; nuclear pore protein 2109283 NUP116 4836889 NUP116 Pichia stipitis CBS 6054 nuclear pore protein XP_001382631.2 <2106428 D 322104 CDS PICST_76484 150863971 4837184 2110516..2111751 1 NC_009042.1 go_function: transferase activity, transferring hexosyl groups; go_process: carbohydrate biosynthesis; glycogenin glucosyltransferase 2111751 GLG2 4837184 GLG2 Pichia stipitis CBS 6054 glycogenin glucosyltransferase XP_001382632.2 2110516 D 322104 CDS PICST_30164 150863972 4837136 2112353..2115085 1 NC_009042.1 hypothetical protein with thrombospondin repeats; go_function: heme binding; electron transporter activity; go_process: electron transport; Putative serine proteinase inhibitor (KU family) 2115085 SPI1.1 4837136 SPI1.1 Pichia stipitis CBS 6054 Putative serine proteinase inhibitor (KU family) XP_001382633.2 2112353 D 322104 CDS PICST_67071 150863973 4836650 2127500..2128999 1 NC_009042.1 predicted protein 2128999 4836650 PICST_67071 Pichia stipitis CBS 6054 predicted protein XP_001382634.2 2127500 D 322104 CDS PICST_35218 126133292 4836879 complement(join(2129557..2129835,2129954..2129998)) 1 NC_009042.1 predicted protein 2129998 4836879 PICST_35218 Pichia stipitis CBS 6054 predicted protein XP_001383171.1 2129557 R 322104 CDS PICST_69865 150863974 4837444 2133917..2136982 1 NC_009042.1 go_function: catalytic activity; ubiquitin activating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 2136982 4837444 PICST_69865 Pichia stipitis CBS 6054 predicted protein XP_001382635.2 2133917 D 322104 CDS PICST_40758 150864385 4836981 complement(2137078..>2140671) 1 NC_009042.1 ATP-dependent permease (STE6); go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; ATP-dependent permease >2140671 HST6 4836981 HST6 Pichia stipitis CBS 6054 ATP-dependent permease XP_001383172.2 2137078 R 322104 CDS PICST_30171 150864386 4837512 complement(2141142..2142503) 1 NC_009042.1 predicted protein 2142503 4837512 PICST_30171 Pichia stipitis CBS 6054 predicted protein XP_001383173.2 2141142 R 322104 CDS PICST_55251 150863975 4837434 join(2142773..2142859,2142917..2143478,2143506..2143669) 1 NC_009042.1 predicted protein 2143669 4837434 PICST_55251 Pichia stipitis CBS 6054 predicted protein XP_001382636.2 2142773 D 322104 CDS PICST_30173 126133298 4836917 complement(2143721..2144263) 1 NC_009042.1 predicted protein 2144263 4836917 PICST_30173 Pichia stipitis CBS 6054 predicted protein XP_001383174.1 2143721 R 322104 CDS PICST_40944 150864387 4836652 complement(2144425..2145423) 1 NC_009042.1 predicted protein 2145423 4836652 PICST_40944 Pichia stipitis CBS 6054 predicted protein XP_001383175.2 2144425 R 322104 CDS PICST_41967 150863976 4837468 <2146974..2147708 1 NC_009042.1 predicted protein 2147708 4837468 PICST_41967 Pichia stipitis CBS 6054 predicted protein XP_001382637.2 <2146974 D 322104 CDS PICST_56448 126133302 4836886 complement(2148043..2148690) 1 NC_009042.1 go_function: N-methyltransferase activity; go_process: phospholipid metabolism; Second and third steps of methylation pathway for phosphatidylcholine biosynthesis 2148690 OPI3 4836886 OPI3 Pichia stipitis CBS 6054 Second and third steps of methylation pathway for phosphatidylcholine biosynthesis XP_001383176.1 2148043 R 322104 CDS PICST_30177 150864388 4837334 complement(2149727..2151289) 1 NC_009042.1 carboxylic acid transporter protein (JEN1); go_component: integral to membrane; go_function: transporter activity; go_process: transport; carboxylic acid transporter protein 2151289 JEN11 4837334 JEN11 Pichia stipitis CBS 6054 carboxylic acid transporter protein XP_001383177.2 2149727 R 322104 CDS PICST_30179 150863977 4836739 2157809..2159662 1 NC_009042.1 hypothetical protein 2159662 4836739 PICST_30179 Pichia stipitis CBS 6054 hypothetical protein XP_001382638.2 2157809 D 322104 CDS PICST_70210 150863978 4837168 2160699..2162033 1 NC_009042.1 Saccharopine dehydrogenase [NADP+, L-glutamate-forming] (Saccharopine reductase); seventh step in lysine biosynthesis pathway 2162033 LYS9 4837168 LYS9 Pichia stipitis CBS 6054 seventh step in lysine biosynthesis pathway XP_001382639.2 2160699 D 322104 CDS PICST_55456 150864389 4837599 complement(join(2162163..2162787,2162890..2163767)) 1 NC_009042.1 predicted protein 2163767 4837599 PICST_55456 Pichia stipitis CBS 6054 predicted protein XP_001383178.2 2162163 R 322104 CDS PICST_56221 150863979 4836666 join(<2165302..2165419,2165498..2165577,2165640..2165695,2165748..2166069) 1 NC_009042.1 predicted protein 2166069 4836666 PICST_56221 Pichia stipitis CBS 6054 predicted protein XP_001382640.2 <2165302 D 322104 CDS PICST_54240 150863980 4837493 join(<2167900..2168116,2168204..2169245,2169285..2169440,2169462..2170165,2170259..2171511) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 2171511 4837493 PICST_54240 Pichia stipitis CBS 6054 predicted protein XP_001382641.2 <2167900 D 322104 CDS PICST_30184 150863981 4837197 2171824..>2174399 1 NC_009042.1 predicted protein >2174399 4837197 PICST_30184 Pichia stipitis CBS 6054 predicted protein XP_001382642.2 2171824 D 322104 CDS PICST_87852 150864390 4837462 complement(2174503..2175987) 1 NC_009042.1 go_component: nucleus; go_function: transcription initiation factor activity; go_process: transcription initiation; predicted protein 2175987 4837462 PICST_87852 Pichia stipitis CBS 6054 predicted protein XP_001383179.2 2174503 R 322104 CDS PICST_12953 150864391 4837022 complement(<2176483..>2177205) 1 NC_009042.1 predicted protein >2177205 4837022 PICST_12953 Pichia stipitis CBS 6054 predicted protein XP_001383180.2 <2176483 R 322104 CDS PICST_30187 126133312 4836803 complement(2177791..2178153) 1 NC_009042.1 predicted protein 2178153 4836803 PICST_30187 Pichia stipitis CBS 6054 predicted protein XP_001383181.1 2177791 R 322104 CDS PICST_30188 150863982 4837655 2179900..2181708 1 NC_009042.1 predicted protein 2181708 4837655 PICST_30188 Pichia stipitis CBS 6054 predicted protein XP_001382643.2 2179900 D 322104 CDS PICST_88098 150864392 4837552 complement(2182495..2184384) 1 NC_009042.1 predicted protein 2184384 4837552 PICST_88098 Pichia stipitis CBS 6054 predicted protein XP_001383182.2 2182495 R 322104 CDS PICST_40457 150863983 4836670 join(<2186507..2189049,2189143..2189515,2190062..2190331) 1 NC_009042.1 go_component: membrane; go_process: transport; predicted protein 2190331 4836670 PICST_40457 Pichia stipitis CBS 6054 predicted protein XP_001382644.2 <2186507 D 322104 CDS PICST_30191 150864393 4837114 complement(<2190457..2192341) 1 NC_009042.1 predicted protein 2192341 4837114 PICST_30191 Pichia stipitis CBS 6054 predicted protein XP_001383183.2 <2190457 R 322104 CDS PICST_87539 150863984 4837624 join(2193221..2193499,2193632..2195980) 1 NC_009042.1 go_function: nucleic acid binding; helicase activity; ATP binding; pre-mRNA processing RNA-helicase 2195980 PRP5 4837624 PRP5 Pichia stipitis CBS 6054 pre-mRNA processing RNA-helicase XP_001382645.2 2193221 D 322104 CDS PICST_30193 126132242 4837598 2196452..2197273 1 NC_009042.1 go_function: catalytic activity; go_process: metabolism; enoyl CoA hydratase 2197273 ECH1 4837598 ECH1 Pichia stipitis CBS 6054 enoyl CoA hydratase XP_001382646.1 2196452 D 322104 CDS PICST_70031 150863985 4837625 2197984..2199642 1 NC_009042.1 predicted protein 2199642 4837625 PICST_70031 Pichia stipitis CBS 6054 predicted protein XP_001382647.2 2197984 D 322104 CDS PICST_30195 150863986 4837107 2202147..2204585 1 NC_009042.1 hypothetical protein, likely cell wall localized and GPI-anchored mucin like 2204585 MUC1.3 4837107 MUC1.3 Pichia stipitis CBS 6054 hypothetical protein, likely cell wall localized and GPI-anchored mucin like XP_001382648.2 2202147 D 322104 CDS PICST_87203 126132248 4837099 join(2207159..2207258,2207534..2207640) 1 NC_009042.1 go_component: membrane; go_process: protein targeting; intracellular protein transport; predicted protein 2207640 4837099 PICST_87203 Pichia stipitis CBS 6054 predicted protein XP_001382649.1 2207159 D 322104 CDS PICST_67079 150863987 4836843 2207922..2208752 1 NC_009042.1 predicted protein 2208752 4836843 PICST_67079 Pichia stipitis CBS 6054 predicted protein XP_001382650.2 2207922 D 322104 CDS PICST_41297 150863988 4837600 2209054..2210001 1 NC_009042.1 predicted protein 2210001 4837600 PICST_41297 Pichia stipitis CBS 6054 predicted protein XP_001382651.2 2209054 D 322104 CDS PICST_30198 150864394 4836952 complement(join(2210139..2210152,2210211..2211429)) 1 NC_009042.1 predicted protein 2211429 4836952 PICST_30198 Pichia stipitis CBS 6054 predicted protein XP_001383184.2 2210139 R 322104 CDS PICST_54287 150864395 4836823 complement(2214637..2215512) 1 NC_009042.1 predicted protein 2215512 4836823 PICST_54287 Pichia stipitis CBS 6054 predicted protein XP_001383185.2 2214637 R 322104 CDS PICST_87387 150863989 4837054 2216350..2218842 1 NC_009042.1 predicted protein 2218842 4837054 PICST_87387 Pichia stipitis CBS 6054 predicted protein XP_001382652.2 2216350 D 322104 CDS PICST_70126 150864396 4837589 complement(2218909..2220615) 1 NC_009042.1 go_component: transcription factor TFIID complex; go_process: transcription initiation; TFIID subunit (TBP-associated factor) 2220615 TAF122 4837589 TAF122 Pichia stipitis CBS 6054 TFIID subunit (TBP-associated factor) XP_001383186.2 2218909 R 322104 CDS PICST_30203 150864397 4837627 complement(2221181..2223496) 1 NC_009042.1 predicted protein 2223496 4837627 PICST_30203 Pichia stipitis CBS 6054 predicted protein XP_001383187.2 2221181 R 322104 CDS PICST_81358 150864398 4837241 complement(join(2223944..2224000,2224013..2224489,2224523..2227545,2227573..2228239)) 1 NC_009042.1 go_function: nucleic acid binding; helicase activity; ATP binding; predicted protein 2228239 4837241 PICST_81358 Pichia stipitis CBS 6054 predicted protein XP_001383188.2 2223944 R 322104 CDS PICST_67083 150863990 4836999 2232874..2234703 1 NC_009042.1 fungal Zn(2)-Cys(6) binuclear cluster zinc finger transcription factor; slight identity to CAT8; transcription factor involved in gluconeogenesis; involved in pleiotropic drug resistance; go_component: nucleus; FCR1; zinc finger transcription factor 2234703 FCR1 4836999 FCR1 Pichia stipitis CBS 6054 FCR1; zinc finger transcription factor XP_001382653.2 2232874 D 322104 CDS PICST_67084 150863991 4837574 2236305..2236706 1 NC_009042.1 predicted protein 2236706 4837574 PICST_67084 Pichia stipitis CBS 6054 predicted protein XP_001382654.2 2236305 D 322104 CDS PICST_76518 126132260 4837443 2239408..2240415 1 NC_009042.1 glyceraldehyde-3-phosphate dehydrogenase (GAPDH); go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity; go_process: glycolysis; glyceraldehyde-3-phosphate dehydrogenase 2240415 TDH3 4837443 TDH3 Pichia stipitis CBS 6054 glyceraldehyde-3-phosphate dehydrogenase XP_001382655.1 2239408 D 322104 CDS PICST_30208 126132262 4836968 2241093..2242124 1 NC_009042.1 predicted protein 2242124 4836968 PICST_30208 Pichia stipitis CBS 6054 predicted protein XP_001382656.1 2241093 D 322104 CDS PICST_70572 150863992 4836956 2242982..2245261 1 NC_009042.1 Transfers mannosyl residues from dolichyl phosphate-D-mannose to seryl and threonyl residues in proteins; acts in complex with Pmt1p; go_component: membrane; go_function: mannosyltransferase activity; go_process: O-linked glycosylation; Phospho Mannno Transferase; dolichyl-P-mannose-protein mannosyltransferase 2245261 PMT2 4836956 PMT2 Pichia stipitis CBS 6054 Phospho Mannno Transferase; dolichyl-P-mannose-protein mannosyltransferase XP_001382657.2 2242982 D 322104 CDS PICST_56204 126132266 4837442 <2246267..2246734 1 NC_009042.1 Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain); go_function: molecular function unknown; mitochondrial protein required for iron metabolism 2246734 ISA2 4837442 ISA2 Pichia stipitis CBS 6054 mitochondrial protein required for iron metabolism XP_001382658.1 <2246267 D 322104 CDS PICST_81383 150864399 4837236 complement(2247185..2249077) 1 NC_009042.1 predicted protein 2249077 4837236 PICST_81383 Pichia stipitis CBS 6054 predicted protein XP_001383189.2 2247185 R 322104 CDS PICST_56473 150863993 4837346 join(2251507..2251986,2252005..2252469) 1 NC_009042.1 phosphoglycerate mutase 2252469 PMU3 4837346 PMU3 Pichia stipitis CBS 6054 phosphoglycerate mutase XP_001382659.2 2251507 D 322104 CDS PICST_87338 150863994 4837566 join(2254991..2255585,2255715..2255918,2256057..2257367,2257608..2257999) 1 NC_009042.1 predicted protein 2257999 4837566 PICST_87338 Pichia stipitis CBS 6054 predicted protein XP_001382660.2 2254991 D 322104 CDS PICST_30214 150863995 4836665 2260098..2260631 1 NC_009042.1 predicted protein 2260631 4836665 PICST_30214 Pichia stipitis CBS 6054 predicted protein XP_001382661.2 2260098 D 322104 CDS PICST_69919 126132274 4836862 2263131..2265716 1 NC_009042.1 go_component: membrane; predicted protein 2265716 4836862 PICST_69919 Pichia stipitis CBS 6054 predicted protein XP_001382662.1 2263131 D 322104 CDS PICST_55811 150863996 4837119 2266431..2267429 1 NC_009042.1 go_component: membrane; go_function: pyrophosphatase activity; go_process: metabolism; Inorganic pyrophosphatase, mitochondrial precursor (Pyrophosphate phospho-hydrolase) (PPase) 2267429 PPA2 4837119 PPA2 Pichia stipitis CBS 6054 Inorganic pyrophosphatase, mitochondrial precursor (Pyrophosphate phospho-hydrolase) (PPase) XP_001382663.2 2266431 D 322104 CDS PICST_40727 150864400 4837177 complement(2267508..2272436) 1 NC_009042.1 nucleoporin 2272436 NUP188 4837177 NUP188 Pichia stipitis CBS 6054 nucleoporin XP_001383190.2 2267508 R 322104 CDS PICST_40742 150863997 4837010 2272877..2274175 1 NC_009042.1 go_function: ATP binding; kinase activity; go_process: phosphorylation; mevalonate kinase 2274175 ERG12 4837010 ERG12 Pichia stipitis CBS 6054 mevalonate kinase XP_001382664.2 2272877 D 322104 CDS PICST_55493 150864401 4837180 complement(2274440..2275426) 1 NC_009042.1 go_component: membrane; go_function: cation transporter activity; go_process: cation transport; predicted protein 2275426 4837180 PICST_55493 Pichia stipitis CBS 6054 predicted protein XP_001383191.2 2274440 R 322104 CDS PICST_41430 126132280 4837246 2275763..2276173 1 NC_009042.1 holo-[acyl-carrier-protein] synthase (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS); go_function: magnesium ion binding; phosphopantetheinyltransferase activity; go_process: fatty acid biosynthesis; holo-(acyl-carrier protein) synthase 2276173 ACPS 4837246 ACPS Pichia stipitis CBS 6054 holo-(acyl-carrier protein) synthase XP_001382665.1 2275763 D 322104 CDS PICST_70121 126133334 4837220 complement(2276343..2277929) 1 NC_009042.1 go_function: catalytic activity; GMP synthase (glutamine-hydrolyzing) activity; ATP binding; go_process: purine nucleotide biosynthesis; GMP biosynthesis; GMP synthase 2277929 GUA1 4837220 GUA1 Pichia stipitis CBS 6054 GMP synthase XP_001383192.1 2276343 R 322104 CDS PICST_55404 126132282 4837579 2278625..2278975 1 NC_009042.1 predicted protein 2278975 4837579 PICST_55404 Pichia stipitis CBS 6054 predicted protein XP_001382666.1 2278625 D 322104 CDS PICST_42488 150863998 4837223 2279215..2280618 1 NC_009042.1 predicted protein 2280618 4837223 PICST_42488 Pichia stipitis CBS 6054 predicted protein XP_001382667.2 2279215 D 322104 CDS PICST_54387 150864402 4837224 complement(2280889..2282145) 1 NC_009042.1 Putative trehalase; N2227-like protein; Putative trehalase N2227-like protein 2282145 4837224 PICST_54387 Pichia stipitis CBS 6054 Putative trehalase N2227-like protein XP_001383193.2 2280889 R 322104 CDS PICST_55783 150863999 4837341 2283300..2284235 1 NC_009042.1 Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-alpha); go_function: protein prenyltransferase activity; go_process: protein amino acid prenylation; protein farnesyltransferase / geranylgeranyltransferase type I alpha subunit 2284235 RAM2 4837341 RAM2 Pichia stipitis CBS 6054 protein farnesyltransferase / geranylgeranyltransferase type I alpha subunit XP_001382668.2 2283300 D 322104 CDS PICST_40644 150864403 4837249 complement(join(2292975..2294291,2294356..2294457)) 1 NC_009042.1 go_function: tRNA isopentenyltransferase activity; ATP binding; go_process: tRNA processing; predicted protein 2294457 4837249 PICST_40644 Pichia stipitis CBS 6054 predicted protein XP_001383194.2 2292975 R 322104 CDS PICST_56033 150864404 4837401 complement(join(2294614..2294716,2294804..2297004)) 1 NC_009042.1 go_process: signal transduction; predicted protein 2297004 4837401 PICST_56033 Pichia stipitis CBS 6054 predicted protein XP_001383195.2 2294614 R 322104 CDS PICST_35246 150864405 4837521 complement(join(2297299..2298290,2298375..2299389)) 1 NC_009042.1 go_component: nucleus; go_function: DNA binding; predicted protein 2299389 4837521 PICST_35246 Pichia stipitis CBS 6054 predicted protein XP_001383196.2 2297299 R 322104 CDS PICST_76300 150864000 4836908 join(2300638..2302257,2302300..2302821,2302849..2303023,2303078..2303363,2303400..2303511) 1 NC_009042.1 predicted protein 2303511 4836908 PICST_76300 Pichia stipitis CBS 6054 predicted protein XP_001382669.2 2300638 D 322104 CDS PICST_88036 126133344 4837250 complement(2303921..2304457) 1 NC_009042.1 predicted protein 2304457 4837250 PICST_88036 Pichia stipitis CBS 6054 predicted protein XP_001383197.1 2303921 R 322104 CDS PICST_76179 150864001 4837298 2305227..2305772 1 NC_009042.1 predicted protein 2305772 4837298 PICST_76179 Pichia stipitis CBS 6054 predicted protein XP_001382670.2 2305227 D 322104 CDS PICST_30231 150864406 4837259 complement(2306204..2310658) 1 NC_009042.1 predicted protein 2310658 4837259 PICST_30231 Pichia stipitis CBS 6054 predicted protein XP_001383198.2 2306204 R 322104 CDS PICST_30233 150864002 4837517 2315954..2318758 1 NC_009042.1 predicted protein 2318758 4837517 PICST_30233 Pichia stipitis CBS 6054 predicted protein XP_001382671.2 2315954 D 322104 CDS PICST_55623 126132294 4837258 join(2319412..2319486,2319520..2321988) 1 NC_009042.1 go_function: acetylglutamate kinase activity; go_process: amino acid biosynthesis; amino acid metabolism; arginine biosynthesis; predicted protein 2321988 4837258 PICST_55623 Pichia stipitis CBS 6054 predicted protein XP_001382672.1 2319412 D 322104 CDS PICST_35251 150864003 4837268 2322479..2323924 1 NC_009042.1 putative tyrosine phosphatase 2323924 SIW14.3 4837268 SIW14.3 Pichia stipitis CBS 6054 putative tyrosine phosphatase XP_001382673.2 2322479 D 322104 CDS PICST_54281 150864004 4837269 <2325691..>2327094 1 NC_009042.1 go_function: nucleic acid binding; helicase activity; ATP binding; Mitochondrial RNA helicase of the DEAD box family >2327094 MSS116 4837269 MSS116 Pichia stipitis CBS 6054 Mitochondrial RNA helicase of the DEAD box family XP_001382674.2 <2325691 D 322104 CDS PICST_3580 150864407 4837225 complement(<2327740..>2329068) 1 NC_009042.1 predicted protein >2329068 4837225 PICST_3580 Pichia stipitis CBS 6054 predicted protein XP_001383199.2 <2327740 R 322104 CDS PICST_67096 150864408 4837345 complement(2330882..2332942) 1 NC_009042.1 hypopthetical protein 2332942 4837345 PICST_67096 Pichia stipitis CBS 6054 hypopthetical protein XP_001383200.2 2330882 R 322104 CDS PICST_40722 150864409 4836915 complement(2335023..2336738) 1 NC_009042.1 conserved transmembrane protein 2336738 YTP1 4836915 YTP1 Pichia stipitis CBS 6054 conserved transmembrane protein XP_001383201.2 2335023 R 322104 CDS PICST_54052 126133354 4837472 complement(2339136..>2340596) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Serine/threonine-protein kinase CBK1 >2340596 CBK1 4837472 CBK1 Pichia stipitis CBS 6054 Serine/threonine-protein kinase CBK1 XP_001383202.1 2339136 R 322104 CDS PICST_81825 126133356 4836679 complement(join(2342675..2342991,2343425..2343428)) 1 NC_009042.1 60S ribosomal protein L44 (60S ribosomal protein L41); go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L44 2343428 RPL42A 4836679 RPL42A Pichia stipitis CBS 6054 60S ribosomal protein L44 XP_001383203.1 2342675 R 322104 CDS PICST_67099 150864410 4837020 complement(2344125..2344907) 1 NC_009042.1 hypothetical protein 2344907 4837020 PICST_67099 Pichia stipitis CBS 6054 hypothetical protein XP_001383204.2 2344125 R 322104 CDS PICST_30244 150864005 4837210 2346776..2347750 1 NC_009042.1 putative zinc finger protein; go_function: DNA binding; hypothetical protein 2347750 BED1.2 4837210 BED1.2 Pichia stipitis CBS 6054 hypothetical protein XP_001382675.2 2346776 D 322104 CDS PICST_82351 150864411 4837305 complement(join(2347959..2348453,2348466..2349720,2349772..2350025)) 1 NC_009042.1 conserved hypothetical protein 2350025 4837305 PICST_82351 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001383205.2 2347959 R 322104 CDS PICST_56314 150864006 4837652 join(2350938..2351788,2351819..2352176) 1 NC_009042.1 go_component: actin cytoskeleton; go_function: structural constituent of cytoskeleton; actin-related protein 2352176 ARP6 4837652 ARP6 Pichia stipitis CBS 6054 actin-related protein XP_001382676.2 2350938 D 322104 CDS PICST_30247 150864412 4837309 complement(2352352..2353290) 1 NC_009042.1 N-acetylglucosaminyl phosphatidylinositol de-N-acetylase 2353290 GPI12 4837309 GPI12 Pichia stipitis CBS 6054 N-acetylglucosaminyl phosphatidylinositol de-N-acetylase XP_001383206.2 2352352 R 322104 CDS PICST_35256 126133364 4837522 complement(2353808..2354764) 1 NC_009042.1 trans-aconitate methyltransferase 2 2354764 TMT2 4837522 TMT2 Pichia stipitis CBS 6054 trans-aconitate methyltransferase 2 XP_001383207.1 2353808 R 322104 CDS PICST_622 150864413 4837479 complement(<2355255..>2358281) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; CAT8 controls the key enzymes of gluconeogenesis >2358281 CAT8 4837479 CAT8 Pichia stipitis CBS 6054 CAT8 controls the key enzymes of gluconeogenesis XP_001383208.2 <2355255 R 322104 CDS PICST_30250 150864007 4837588 2358789..2359937 1 NC_009042.1 go_process: base-excision repair; Endonuclease III 2359937 NTG2 4837588 NTG2 Pichia stipitis CBS 6054 Endonuclease III XP_001382677.2 2358789 D 322104 CDS PICST_30251 150864414 4837318 complement(join(2360006..2364728,2364821..2364899,2365218..2365338)) 1 NC_009042.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily 2365338 YCF1 4837318 YCF1 Pichia stipitis CBS 6054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily XP_001383209.2 2360006 R 322104 CDS PICST_55298 150864008 4837590 join(2365641..2365743,2365861..2366867) 1 NC_009042.1 Glucose-repressible alcohol dehydrogenase transcriptional effector (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4) 2366867 CCR4 4837590 CCR4 Pichia stipitis CBS 6054 Glucose-repressible alcohol dehydrogenase transcriptional effector (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4) XP_001382678.2 2365641 D 322104 CDS PICST_69971 150864009 4837317 2372481..2374430 1 NC_009042.1 go_function: phospholipase activity; go_process: phospholipid catabolism; predicted protein 2374430 4837317 PICST_69971 Pichia stipitis CBS 6054 predicted protein XP_001382679.2 2372481 D 322104 CDS PICST_30256 150864010 4837349 2374693..2377626 1 NC_009042.1 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) DOM34 Interacting Protein; beta transducin 2377626 DIP2 4837349 DIP2 Pichia stipitis CBS 6054 beta transducin XP_001382680.2 2374693 D 322104 CDS PICST_67102 150864011 4837352 join(2379777..2380818,2380900..2382345,2382382..2383217) 1 NC_009042.1 predicted protein 2383217 4837352 PICST_67102 Pichia stipitis CBS 6054 predicted protein XP_001382681.2 2379777 D 322104 CDS PICST_70448 150864012 4837351 2383718..2384143 1 NC_009042.1 go_function: protein tyrosine phosphatase activity; go_process: protein amino acid dephosphorylation; predicted protein 2384143 4837351 PICST_70448 Pichia stipitis CBS 6054 predicted protein XP_001382682.2 2383718 D 322104 CDS PICST_75782 150864013 4837356 2384628..2386460 1 NC_009042.1 negative transcriptional regulator; member of the NOT complex, a global negative regulator of transcription; go_component: nucleus; go_function: transcription regulator activity; go_process: regulation of transcription; negative transcriptional regulator 2386460 NOT5 4837356 NOT5 Pichia stipitis CBS 6054 negative transcriptional regulator XP_001382683.2 2384628 D 322104 CDS PICST_67104 150864014 4837364 2388017..2389561 1 NC_009042.1 predicted protein 2389561 4837364 PICST_67104 Pichia stipitis CBS 6054 predicted protein XP_001382684.2 2388017 D 322104 CDS PICST_67105 126132320 4837370 2391321..2393354 1 NC_009042.1 transketolase 1 (TK) (TK 1)(TKT)(TKL1); transketolase 1 2393354 TKT1 4837370 TKT1 Pichia stipitis CBS 6054 transketolase 1 XP_001382685.1 2391321 D 322104 CDS PICST_27980 126133370 4837414 complement(2393738..2394784) 1 NC_009042.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; alcohol dehydrogenase 2394784 ADH2 4837414 ADH2 Pichia stipitis CBS 6054 alcohol dehydrogenase XP_001383210.1 2393738 R 322104 CDS PICST_30264 126133372 4837013 complement(join(2396723..2397019,2397092..2397157,2397213..2397326)) 1 NC_009042.1 retrieval from vacuole to Golgi; go_process: intracellular signaling cascade; putative golgi membrane protein-sorting protein 2397326 GRD19 4837013 GRD19 Pichia stipitis CBS 6054 putative golgi membrane protein-sorting protein XP_001383211.1 2396723 R 322104 CDS PICST_70693 126133374 4836837 complement(2399484..2400938) 1 NC_009042.1 converts saturated fatty acyl-CoAs into cis-Delta-9 unsaturated fatty acids; go_function: oxidoreductase activity; stearoyl-CoA desaturase 2400938 OLE1 4836837 OLE1 Pichia stipitis CBS 6054 stearoyl-CoA desaturase XP_001383212.1 2399484 R 322104 CDS PICST_88034 150864015 4837336 2403864..2405456 1 NC_009042.1 predicted protein 2405456 4837336 PICST_88034 Pichia stipitis CBS 6054 predicted protein XP_001382686.2 2403864 D 322104 CDS PICST_65303 126132324 4837420 2407076..2408452 1 NC_009042.1 go_function: GTP binding; go_process: protein biosynthesis; Elongation factor 1-alpha (EF-1-alpha) 2408452 TEF1 4837420 TEF1 Pichia stipitis CBS 6054 Elongation factor 1-alpha (EF-1-alpha) XP_001382687.1 2407076 D 322104 CDS PICST_81872 150864415 4837423 complement(join(2408808..2409923,2410002..2410232)) 1 NC_009042.1 predicted protein 2410232 4837423 PICST_81872 Pichia stipitis CBS 6054 predicted protein XP_001383213.2 2408808 R 322104 CDS PICST_75631 126133378 4836729 complement(2411684..2414785) 1 NC_009042.1 Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein); go_component: glycine dehydrogenase complex (decarboxylating); go_function: glycine dehydrogenase (decarboxylating) activity; go_process: glycine metabolism; Glycine cleavage system protein 2414785 GCV2 4836729 GCV2 Pichia stipitis CBS 6054 Glycine cleavage system protein XP_001383214.1 2411684 R 322104 CDS PICST_30270 150864416 4837518 complement(2416015..2417028) 1 NC_009042.1 go_function: homocysteine S-methyltransferase activity; AdoMet-homocysteine methyltransferase 2417028 SAM4 4837518 SAM4 Pichia stipitis CBS 6054 AdoMet-homocysteine methyltransferase XP_001383215.2 2416015 R 322104 CDS PICST_65304 150864016 4837289 join(2417287..2417737,2417771..2420145) 1 NC_009042.1 large subunit of the nuclear pre-mRNA cap-binding protein complex; go_function: RNA binding; go_process: protein biosynthesis; GCR3 protein 2420145 GCR3 4837289 GCR3 Pichia stipitis CBS 6054 GCR3 protein XP_001382688.2 2417287 D 322104 CDS PICST_70378 126132328 4837427 2420456..2421418 1 NC_009042.1 go_component: membrane; go_function: ATP binding; go_process: transport; predicted protein 2421418 4837427 PICST_70378 Pichia stipitis CBS 6054 predicted protein XP_001382689.1 2420456 D 322104 CDS PICST_30273 126133382 4837456 complement(2421665..2422042) 1 NC_009042.1 predicted protein 2422042 4837456 PICST_30273 Pichia stipitis CBS 6054 predicted protein XP_001383216.1 2421665 R 322104 CDS PICST_65306 150864017 4837636 join(2423400..2423714,2423868..2424042,2424094..2425715) 1 NC_009042.1 Serine/threonine protein kinase with similarity to protein kinase; go_function: protein kinase activity; ATP binding; protein serine/threonine kinase activity; go_process: protein amino acid phosphorylation; Serine/threonine-protein kinase 2425715 YPK2 4837636 YPK2 Pichia stipitis CBS 6054 Serine/threonine-protein kinase XP_001382690.2 2423400 D 322104 CDS PICST_76616 126132332 4837275 2426859..2427308 1 NC_009042.1 predicted protein 2427308 4837275 PICST_76616 Pichia stipitis CBS 6054 predicted protein XP_001382691.1 2426859 D 322104 CDS PICST_40752 150864417 4836677 complement(join(2427533..2427684,2427721..>2428030)) 1 NC_009042.1 predicted protein 2427684 4836677 PICST_40752 Pichia stipitis CBS 6054 predicted protein XP_001383217.2 2427533 R 322104 CDS PICST_70720 126132334 4837461 2429462..2430781 1 NC_009042.1 go_component: phosphopyruvate hydratase complex; go_function: phosphopyruvate hydratase activity; go_process: glycolysis; enolase I 2430781 ENO1 4837461 ENO1 Pichia stipitis CBS 6054 enolase I XP_001382692.1 2429462 D 322104 CDS PICST_55542 126133386 4836702 complement(2431015..2432412) 1 NC_009042.1 kynureninase with role in NAD biosynthesis; Kynureninase (L-kynurenine hydrolase) 2432412 BNA5 4836702 BNA5 Pichia stipitis CBS 6054 Kynureninase (L-kynurenine hydrolase) XP_001383218.1 2431015 R 322104 CDS PICST_55999 150864018 4837635 2433369..2433848 1 NC_009042.1 go_component: clathrin vesicle coat; go_process: intracellular protein transport; predicted protein 2433848 4837635 PICST_55999 Pichia stipitis CBS 6054 predicted protein XP_001382693.2 2433369 D 322104 CDS PICST_55406 126133388 4836667 complement(2434044..2434487) 1 NC_009042.1 predicted protein 2434487 4836667 PICST_55406 Pichia stipitis CBS 6054 predicted protein XP_001383219.1 2434044 R 322104 CDS PICST_40526 150864019 4837571 join(2435689..2435982,2436025..2436124,2436227..2437743) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 2437743 4837571 PICST_40526 Pichia stipitis CBS 6054 predicted protein XP_001382694.2 2435689 D 322104 CDS PICST_35277 126132340 4836688 2439822..2440397 1 NC_009042.1 Cell division control protein 42 homolog Rho GTP-binding protein regulating the cell cycle; go_function: GTP binding; go_process: small GTPase mediated signal transduction; Cell division control protein 42 homolog 2440397 CDC42 4836688 CDC42 Pichia stipitis CBS 6054 Cell division control protein 42 homolog XP_001382695.1 2439822 D 322104 CDS PICST_67116 126133390 4836828 complement(2441129..2441854) 1 NC_009042.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; HMG box-containing protein 2441854 HMO2 4836828 HMO2 Pichia stipitis CBS 6054 HMG box-containing protein XP_001383220.1 2441129 R 322104 CDS PICST_81386 150864020 4836899 2442529..2444190 1 NC_009042.1 predicted protein 2444190 4836899 PICST_81386 Pichia stipitis CBS 6054 predicted protein XP_001382696.2 2442529 D 322104 CDS PICST_30285 126133392 4836876 complement(2444545..2445543) 1 NC_009042.1 predicted protein 2445543 4836876 PICST_30285 Pichia stipitis CBS 6054 predicted protein XP_001383221.1 2444545 R 322104 CDS PICST_67118 150864418 4837577 complement(2448086..2449336) 1 NC_009042.1 Ca2+/H+ antiporter Similar to sodium/calcium exchangers, including bovine Na+/Ca2+,K+ antiporter putative vacuolar transmembrane protein; go_component: integral to membrane; Ca2+/H+ antiporter 2449336 VCX1.1 4837577 VCX1.1 Pichia stipitis CBS 6054 Ca2+/H+ antiporter XP_001383222.2 2448086 R 322104 CDS PICST_75910 150864419 4837155 complement(2450263..2451762) 1 NC_009042.1 squalene epoxidase an essential enzyme in the ergosterol-biosynthesis pathway catalyzes the epoxidation of squalene to 2,3-oxidosqualene and is the specific target of the antifungal drug terbinafine; go_function: monooxygenase activity; go_process: aromatic compound metabolism; squalene epoxidase(monooxygenase), erosterol biosynthesis 2451762 ERG1 4837155 ERG1 Pichia stipitis CBS 6054 squalene epoxidase(monooxygenase), erosterol biosynthesis XP_001383223.2 2450263 R 322104 CDS PICST_81885 150864420 4836820 complement(2452497..2454677) 1 NC_009042.1 Translation initiation factor eIF-2B epsilon subunit (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD6) (GCD complex subunit GCD6); go_function: translation initiation factor activity; go_process: regulation of translational initiation; translation initiation factor eIF-2B epsilon subunit, GEF 2454677 GCD6 4836820 GCD6 Pichia stipitis CBS 6054 translation initiation factor eIF-2B epsilon subunit, GEF XP_001383224.2 2452497 R 322104 CDS PICST_81837 126133400 4836901 complement(2455032..2455739) 1 NC_009042.1 hypothetical protein 2455739 4836901 PICST_81837 Pichia stipitis CBS 6054 hypothetical protein XP_001383225.1 2455032 R 322104 CDS PICST_55969 150864021 4837463 2456428..2456826 1 NC_009042.1 go_component: integral to membrane; go_function: copper ion transporter activity; go_process: copper ion transport; copper transpport protein 2456826 CTR2 4837463 CTR2 Pichia stipitis CBS 6054 copper transpport protein XP_001382697.2 2456428 D 322104 CDS PICST_70712 150864022 4836711 2458463..2459767 1 NC_009042.1 U3 snoRNP protein part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); U3 snoRNP protein 2459767 UTP6 4836711 UTP6 Pichia stipitis CBS 6054 U3 snoRNP protein XP_001382698.2 2458463 D 322104 CDS PICST_76215 126133402 4836988 complement(join(2461123..2461533,2462062..2462064)) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S17.e.B 2462064 RPS17B 4836988 RPS17B Pichia stipitis CBS 6054 40S ribosomal protein S17.e.B XP_001383226.1 2461123 R 322104 CDS PICST_55798 150864023 4837017 join(2462966..2463938,2463963..2464309) 1 NC_009042.1 go_component: nucleus; go_function: DNA binding; zinc ion binding; transcription factor, member of ADA and SAGA, two transcriptional adaptor/HAT (histone acetyltransferase) complexes 2464309 ADA2 4837017 ADA2 Pichia stipitis CBS 6054 transcription factor, member of ADA and SAGA, two transcriptional adaptor/HAT (histone acetyltransferase) complexes XP_001382699.2 2462966 D 322104 CDS PICST_70688 150864024 4837421 join(2466778..2467173,2467273..2468373) 1 NC_009042.1 D-Amino acid dehydrogenase (putative); go_function: oxidoreductase activity; go_process: electron transport; highly conserved oxidoreductase 2468373 DAD1 4837421 DAD1 Pichia stipitis CBS 6054 highly conserved oxidoreductase XP_001382700.2 2466778 D 322104 CDS PICST_30296 150864421 4837362 complement(2468659..2469567) 1 NC_009042.1 involved in cell wall biosynthesis; membrane protein 2469567 BIG1 4837362 BIG1 Pichia stipitis CBS 6054 membrane protein XP_001383227.2 2468659 R 322104 CDS PICST_75911 150864025 4837340 2469932..2471401 1 NC_009042.1 aspartyl aminopeptidase Aminopeptidase I zinc metalloprotease (M18); go_component: vacuole; go_function: aminopeptidase I activity; go_process: proteolysis and peptidolysis; aspartyl aminopeptidase 2471401 DNP1 4837340 DNP1 Pichia stipitis CBS 6054 aspartyl aminopeptidase XP_001382701.2 2469932 D 322104 CDS PICST_81292 150864422 4837263 complement(2472342..2473817) 1 NC_009042.1 go_component: membrane; go_process: transport; high-affinity permease for basic amino acids 2473817 ALP1 4837263 ALP1 Pichia stipitis CBS 6054 high-affinity permease for basic amino acids XP_001383228.2 2472342 R 322104 CDS PICST_30300 150864423 4837411 complement(2475464..2476921) 1 NC_009042.1 Heterochromatin-associated protein HP1 and related CHROMO domain proteins involved in silencing; protein involved in silencing Suppressor of Exocyst Mutations 2476921 ESC2 4837411 ESC2 Pichia stipitis CBS 6054 protein involved in silencing Suppressor of Exocyst Mutations XP_001383229.2 2475464 R 322104 CDS PICST_42499 150864026 4837569 2477189..2478856 1 NC_009042.1 predicted protein 2478856 4837569 PICST_42499 Pichia stipitis CBS 6054 predicted protein XP_001382702.2 2477189 D 322104 CDS PICST_81395 150864424 4837270 complement(join(2478906..2480140,2480174..2480270)) 1 NC_009042.1 go_function: catalytic activity; predicted protein 2480270 4837270 PICST_81395 Pichia stipitis CBS 6054 predicted protein XP_001383230.2 2478906 R 322104 CDS PICST_70834 126133412 4837464 complement(join(2480555..2480989,2481149..2481364)) 1 NC_009042.1 involved in the secetory pathway and membrane trafficking; go_component: membrane; go_function: protein carrier activity; go_process: intracellular protein transport; membrane protein 2481364 ERP5 4837464 ERP5 Pichia stipitis CBS 6054 membrane protein XP_001383231.1 2480555 R 322104 CDS PICST_82126 150864425 4836892 complement(join(2481710..2482008,2482045..2483233)) 1 NC_009042.1 Serine/threonine protein kinase involved in cell cycle control; go_function: molecular function unknown; protein serine kinase 2483233 RIO1 4836892 RIO1 Pichia stipitis CBS 6054 protein serine kinase XP_001383232.2 2481710 R 322104 CDS PICST_70819 150864027 4837344 join(2483482..2483520,2483615..2484262) 1 NC_009042.1 Protein required for cell viability; hypothetical protein, essential 2484262 4837344 PICST_70819 Pichia stipitis CBS 6054 hypothetical protein, essential XP_001382703.2 2483482 D 322104 CDS PICST_54383 150864028 4837265 join(2484785..2485324,2485352..2486755) 1 NC_009042.1 hypothetical protein of unknown function; hypothetical protein 2486755 YBV2 4837265 YBV2 Pichia stipitis CBS 6054 hypothetical protein XP_001382704.2 2484785 D 322104 CDS PICST_16270 150864029 4837254 join(<2486946..2487251,2487288..>2488982) 1 NC_009042.1 required for cell viability in S. cerevisiae; conserved hypothetical protein 2487251 4837254 PICST_16270 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001382705.2 <2486946 D 322104 CDS PICST_30308 150864030 4837230 2489367..2491697 1 NC_009042.1 slight similarity to Uncoordinated protein 89; Uncoordinated protein 89-like protein 2491697 UNC89.2 4837230 UNC89.2 Pichia stipitis CBS 6054 Uncoordinated protein 89-like protein XP_001382706.2 2489367 D 322104 CDS PICST_30309 150864426 4836846 complement(2491942..2493573) 1 NC_009042.1 bHLH/Zip transcription factor 2493573 RTG3 4836846 RTG3 Pichia stipitis CBS 6054 bHLH/Zip transcription factor XP_001383233.2 2491942 R 322104 CDS PICST_55889 150864031 4837288 2494440..2495093 1 NC_009042.1 similar to mammalian syntaxin 5; similar to syntaxin and involved in ER to Golgi transport; syntaxin 5-like protein 2495093 SFT2 4837288 SFT2 Pichia stipitis CBS 6054 syntaxin 5-like protein XP_001382707.2 2494440 D 322104 CDS PICST_42119 126133418 4837603 complement(2495227..2495697) 1 NC_009042.1 protein kinase C inhibitor-I, histidine triad nucleotide-binding protein-like protein 2495697 HNT1 4837603 HNT1 Pichia stipitis CBS 6054 protein kinase C inhibitor-I, histidine triad nucleotide-binding protein-like protein XP_001383234.1 2495227 R 322104 CDS PICST_67138 126132366 4837646 2496804..2499293 1 NC_009042.1 Microsomal protein of CDC48/PAS1/SEC18 family of ATPases full length homology to mammalian protein VCP involved in secretion, peroxisome formation and gene expression; go_function: ATP binding; Cell division control protein 48 2499293 CDC48 4837646 CDC48 Pichia stipitis CBS 6054 Cell division control protein 48 XP_001382708.1 2496804 D 322104 CDS PICST_87497 126132368 4837484 2501273..2501761 1 NC_009042.1 unnamed protein product 2501761 4837484 PICST_87497 Pichia stipitis CBS 6054 unnamed protein product XP_001382709.1 2501273 D 322104 CDS PICST_42277 150864032 4836887 2502342..2502680 1 NC_009042.1 hypothetical protein 2502680 4836887 PICST_42277 Pichia stipitis CBS 6054 hypothetical protein XP_001382710.2 2502342 D 322104 CDS PICST_35297 126133420 4837537 complement(2503127..2503507) 1 NC_009042.1 go_component: actin cytoskeleton; go_function: actin binding; go_process: cytoskeleton organization and biogenesis; profilin (actin-binding protein) 2503507 PFY1 4837537 PFY1 Pichia stipitis CBS 6054 profilin (actin-binding protein) XP_001383235.1 2503127 R 322104 CDS PICST_87984 150864427 4837568 complement(2503860..2505710) 1 NC_009042.1 go_function: catalytic activity; ubiquitin activating enzyme activity; go_process: protein modification; ubiquitin cycle; Protein with homology to mammalian ubiquitin activating (E1) enzyme 2505710 UBA2 4837568 UBA2 Pichia stipitis CBS 6054 Protein with homology to mammalian ubiquitin activating (E1) enzyme XP_001383236.2 2503860 R 322104 CDS PICST_87591 126133424 4836873 complement(2506066..2506785) 1 NC_009042.1 Dolichol-phosphate mannosyltransferase (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase); dolichol-P-mannose synthesis 2506785 DPM1 4836873 DPM1 Pichia stipitis CBS 6054 dolichol-P-mannose synthesis XP_001383237.1 2506066 R 322104 CDS PICST_81488 150864428 4836895 complement(join(<2508099..2508300,2508619..2509245,2509333..2509883)) 1 NC_009042.1 RNA-binding / Ran zinc finger proteinrotein; Asparagine-rich protein (ARP protein) 2509883 NRP1 4836895 NRP1 Pichia stipitis CBS 6054 Asparagine-rich protein (ARP protein) XP_001383238.2 <2508099 R 322104 CDS PICST_81786 150864033 4837502 join(2510955..2511377,2511414..2513555) 1 NC_009042.1 conserved hypothetical membrane protein; go_component: membrane; Uncharacterized conserved protein 2513555 4837502 PICST_81786 Pichia stipitis CBS 6054 Uncharacterized conserved protein XP_001382711.2 2510955 D 322104 CDS PICST_30322 150864429 4837540 complement(2514089..2515696) 1 NC_009042.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; UME6 C6 zinc finger URS1-binding protein-like protein 2515696 4837540 PICST_30322 Pichia stipitis CBS 6054 UME6 C6 zinc finger URS1-binding protein-like protein XP_001383239.2 2514089 R 322104 CDS PICST_42694 150864034 4836959 join(<2520105..2521225,2521661..2521901) 1 NC_009042.1 binds multiple proteins involved in cell polarity establishment; go_process: intracellular signaling cascade; Bud emergence mediator 2521901 BEM12 4836959 BEM12 Pichia stipitis CBS 6054 Bud emergence mediator XP_001382712.2 <2520105 D 322104 CDS PICST_30324 150864035 4836854 2524342..2526378 1 NC_009042.1 go_process: intracellular signaling cascade; hypothetical protein 2526378 4836854 PICST_30324 Pichia stipitis CBS 6054 hypothetical protein XP_001382713.2 2524342 D 322104 CDS PICST_30325 150864036 4836932 2527159..2528760 1 NC_009042.1 MUC1-like protein possibly involved in regulation of cell wall synthesis; MUC1-like protein 2528760 MUC1.11 4836932 MUC1.11 Pichia stipitis CBS 6054 MUC1-like protein XP_001382714.2 2527159 D 322104 CDS PICST_56396 150864037 4836941 join(2529495..2529530,2529558..2530859) 1 NC_009042.1 go_function: protein kinase activity; ATP binding; protein serine/threonine kinase activity; go_process: protein amino acid phosphorylation; Ribosomal protein S6 kinase and related proteins 2530859 PSK1 4836941 PSK1 Pichia stipitis CBS 6054 Ribosomal protein S6 kinase and related proteins XP_001382715.2 2529495 D 322104 CDS PICST_67143 150864430 4837044 complement(2530930..2532711) 1 NC_009042.1 unnamed protein product 2532711 4837044 PICST_67143 Pichia stipitis CBS 6054 unnamed protein product XP_001383240.2 2530930 R 322104 CDS PICST_41797 150864038 4837188 2533413..2534147 1 NC_009042.1 go_component: intracellular; go_function: ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; ubiquitinyl hydrolase 1 2534147 YUH1 4837188 YUH1 Pichia stipitis CBS 6054 ubiquitinyl hydrolase 1 XP_001382716.2 2533413 D 322104 CDS PICST_30329 150864431 4837105 complement(<2534268..2535861) 1 NC_009042.1 Leucine permease transcriptional regulator 2535861 LPR1 4837105 LPR1 Pichia stipitis CBS 6054 Leucine permease transcriptional regulator XP_001383241.2 <2534268 R 322104 CDS PICST_87044 150864039 4837375 2538022..2538882 1 NC_009042.1 conserved hypothetical protein 2538882 4837375 PICST_87044 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001382717.2 2538022 D 322104 CDS PICST_41130 126133434 4836838 complement(2538964..>2540583) 1 NC_009042.1 conserved hypothetical protein >2540583 4836838 PICST_41130 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001383242.1 2538964 R 322104 CDS PICST_82220 150864040 4837028 2543370..2545277 1 NC_009042.1 Probable leukotriene A-4 hydrolase (LTA-4 hydrolase) (LTHA4) (Leukotriene A(4) hydrolase); go_function: membrane alanyl aminopeptidase activity; go_process: proteolysis and peptidolysis; Probable leukotriene A-4 hydrolase (LTA-4 hydrolase) (Leukotriene A(4) hydrolase) 2545277 LTA4 4837028 LTA4 Pichia stipitis CBS 6054 Probable leukotriene A-4 hydrolase (LTA-4 hydrolase) (Leukotriene A(4) hydrolase) XP_001382718.2 2543370 D 322104 CDS PICST_30333 126132388 4837307 join(2545769..2545789,2546042..2546542) 1 NC_009042.1 Prenylated Rab acceptor 1 2546542 PRA1 4837307 PRA1 Pichia stipitis CBS 6054 Prenylated Rab acceptor 1 XP_001382719.1 2545769 D 322104 CDS PICST_40810 126133436 4837147 complement(2546921..>2547070) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; cytosolic large ribosomal subunit >2547070 RPL39B 4837147 RPL39B Pichia stipitis CBS 6054 cytosolic large ribosomal subunit XP_001383243.1 2546921 R 322104 CDS PICST_70478 126132390 4836773 2547886..2548278 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S22 2548278 RPS22 4836773 RPS22 Pichia stipitis CBS 6054 40S ribosomal protein S22 XP_001382720.1 2547886 D 322104 CDS PICST_87510 126132392 4836859 join(2548716..2548725,2549245..2549645) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S14-B (RP59B) 2549645 RSP14 4836859 RSP14 Pichia stipitis CBS 6054 40S ribosomal protein S14-B (RP59B) XP_001382721.1 2548716 D 322104 CDS PICST_30336 150864041 4837610 2550122..2553259 1 NC_009042.1 unnamed protein product 2553259 4837610 PICST_30336 Pichia stipitis CBS 6054 unnamed protein product XP_001382722.2 2550122 D 322104 CDS PICST_30337 150864042 4837604 2553594..2554922 1 NC_009042.1 conserved hypothetical protein 2554922 4837604 PICST_30337 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001382723.2 2553594 D 322104 CDS PICST_30338 150864043 4836954 2555928..2557388 1 NC_009042.1 member of triose phosphate translocator family 2557388 SLY41.2 4836954 SLY41.2 Pichia stipitis CBS 6054 member of triose phosphate translocator family XP_001382724.2 2555928 D 322104 CDS PICST_21871 150864044 4836950 <2558048..>2558587 1 NC_009042.1 predicted protein >2558587 4836950 PICST_21871 Pichia stipitis CBS 6054 predicted protein XP_001382725.2 <2558048 D 322104 CDS PICST_30340 150864432 4837033 complement(2558778..2560142) 1 NC_009042.1 monocarboxylate permease homolog 2560142 MCH4.1 4837033 MCH4.1 Pichia stipitis CBS 6054 monocarboxylate permease homolog XP_001383244.2 2558778 R 322104 CDS PICST_56356 150864433 4837645 complement(join(2560317..2565796,2565842..2566284,2566324..2567252)) 1 NC_009042.1 predicted protein 2567252 4837645 PICST_56356 Pichia stipitis CBS 6054 predicted protein XP_001383245.2 2560317 R 322104 CDS PICST_30342 150864434 4837172 complement(2567836..2568429) 1 NC_009042.1 predicted protein 2568429 4837172 PICST_30342 Pichia stipitis CBS 6054 predicted protein XP_001383246.2 2567836 R 322104 CDS PICST_41353 150864045 4837235 2569702..2570394 1 NC_009042.1 predicted protein 2570394 4837235 PICST_41353 Pichia stipitis CBS 6054 predicted protein XP_001382726.2 2569702 D 322104 CDS PICST_69820 150864435 4837492 complement(2570714..2574736) 1 NC_009042.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 2574736 4837492 PICST_69820 Pichia stipitis CBS 6054 predicted protein XP_001383247.2 2570714 R 322104 CDS PICST_70277 150864436 4836782 complement(2575786..2576886) 1 NC_009042.1 go_function: 3'-5'-exoribonuclease activity; RNA binding; go_process: RNA processing; predicted protein 2576886 4836782 PICST_70277 Pichia stipitis CBS 6054 predicted protein XP_001383248.2 2575786 R 322104 CDS PICST_87428 150864046 4837152 2579034..2585414 1 NC_009042.1 go_function: disulfide oxidoreductase activity; oxidoreductase activity; glutamate synthase activity; go_process: electron transport; metabolism; glutamate biosynthesis; nitrogen compound metabolism; glutamate synthase 2585414 GLT1 4837152 GLT1 Pichia stipitis CBS 6054 glutamate synthase XP_001382727.2 2579034 D 322104 CDS PICST_67152 150864437 4836882 complement(2585808..2586263) 1 NC_009042.1 predicted protein 2586263 4836882 PICST_67152 Pichia stipitis CBS 6054 predicted protein XP_001383249.2 2585808 R 322104 CDS PICST_42198 150864047 4837448 2600328..2601662 1 NC_009042.1 predicted protein 2601662 4837448 PICST_42198 Pichia stipitis CBS 6054 predicted protein XP_001382728.2 2600328 D 322104 CDS PICST_54260 126132408 4837483 2602878..2603930 1 NC_009042.1 go_component: membrane; go_function: binding; go_process: transport; ADP/ATP carrier protein 2603930 ANT1 4837483 ANT1 Pichia stipitis CBS 6054 ADP/ATP carrier protein XP_001382729.1 2602878 D 322104 CDS PICST_87868 126132410 4837611 2604864..2605301 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2605301 4837611 PICST_87868 Pichia stipitis CBS 6054 predicted protein XP_001382730.1 2604864 D 322104 CDS PICST_30355 150864438 4836953 complement(2605691..2606926) 1 NC_009042.1 predicted protein 2606926 4836953 PICST_30355 Pichia stipitis CBS 6054 predicted protein XP_001383250.2 2605691 R 322104 CDS PICST_76526 150864048 4836746 join(2607543..2607894,2607931..2608550) 1 NC_009042.1 predicted protein 2608550 4836746 PICST_76526 Pichia stipitis CBS 6054 predicted protein XP_001382731.2 2607543 D 322104 CDS PICST_30357 150864439 4836920 complement(2608808..2611246) 1 NC_009042.1 go_component: membrane; go_function: potassium ion transporter activity; go_process: potassium ion transport; predicted protein 2611246 4836920 PICST_30357 Pichia stipitis CBS 6054 predicted protein XP_001383251.2 2608808 R 322104 CDS PICST_30358 150864049 4837498 2613651..2616311 1 NC_009042.1 predicted protein 2616311 4837498 PICST_30358 Pichia stipitis CBS 6054 predicted protein XP_001382732.2 2613651 D 322104 CDS PICST_76181 150864050 4836818 2616892..2617479 1 NC_009042.1 NAT3 Catalytic subunit of the NatB N-terminal acetyltransferase, which catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met; go_function: N-acetyltransferase activity; N-terminal acetyltransferase 2617479 NAT3 4836818 NAT3 Pichia stipitis CBS 6054 N-terminal acetyltransferase XP_001382733.2 2616892 D 322104 CDS PICST_87327 126132418 4837532 join(2619348..2619584,2623847..2625274) 1 NC_009042.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; multidrug resistance transporter 2625274 QDR21 4837532 QDR21 Pichia stipitis CBS 6054 multidrug resistance transporter XP_001382734.1 2619348 D 322104 CDS PICST_81572 150864051 4837036 join(2626387..2627113,2627165..>2627808) 1 NC_009042.1 predicted protein 2627113 4837036 PICST_81572 Pichia stipitis CBS 6054 predicted protein XP_001382735.2 2626387 D 322104 CDS PICST_42745 150864052 4837040 2628887..2631940 1 NC_009042.1 Phosphatidylinositol 3-kinase VPS34 (PI3-kinase) (PtdIns-3-kinase) (PI3K) (Vacuolar sorting protein 34); go_component: phosphoinositide 3-kinase complex; go_function: phosphotransferase activity, alcohol group as acceptor; inositol or phosphatidylinositol kinase activity; phosphatidylinositol 3-kinase activity; 1-phosphatidylinositol 3-kinase 2631940 VPS34 4837040 VPS34 Pichia stipitis CBS 6054 1-phosphatidylinositol 3-kinase XP_001382736.2 2628887 D 322104 CDS PICST_41000 150864440 4836933 complement(2631945..2632676) 1 NC_009042.1 Dephospho-CoA kinase (Dephosphocoenzyme A kinase) predicted to catalyze the final step in synthesis of Coenzyme A; go_function: ATP binding; Dephospho-CoA kinase (Dephosphocoenzyme A kinase) (COAE) 2632676 COA5 4836933 COA5 Pichia stipitis CBS 6054 Dephospho-CoA kinase (Dephosphocoenzyme A kinase) (COAE) XP_001383252.2 2631945 R 322104 CDS PICST_54699 150864053 4836805 2632876..2633949 1 NC_009042.1 ketopantoate reductase (2-dehydropantoate 2-reductase), has similarity to Cbs2p and yeast; go_function: 2-dehydropantoate 2-reductase activity; go_process: pyrimidine base metabolism; 2-dehydropantoate 2-reductase (Ketopantoate reductase) (KPA reductase) (KPR) 2633949 PAN5 4836805 PAN5 Pichia stipitis CBS 6054 2-dehydropantoate 2-reductase (Ketopantoate reductase) (KPA reductase) (KPR) XP_001382737.2 2632876 D 322104 CDS PICST_42613 150864441 4837541 complement(2634003..2635364) 1 NC_009042.1 predicted protein 2635364 4837541 PICST_42613 Pichia stipitis CBS 6054 predicted protein XP_001383253.2 2634003 R 322104 CDS PICST_87042 126133458 4836661 complement(2635616..2636140) 1 NC_009042.1 go_function: calcium ion binding; predicted protein 2636140 4836661 PICST_87042 Pichia stipitis CBS 6054 predicted protein XP_001383254.1 2635616 R 322104 CDS PICST_76360 150864054 4836778 join(2636538..2636644,2636792..2636991,2637049..2638634) 1 NC_009042.1 predicted protein 2638634 4836778 PICST_76360 Pichia stipitis CBS 6054 predicted protein XP_001382738.2 2636538 D 322104 CDS PICST_12827 150864055 4837533 <2640309..>2641082 1 NC_009042.1 predicted protein >2641082 4837533 PICST_12827 Pichia stipitis CBS 6054 predicted protein XP_001382739.2 <2640309 D 322104 CDS PICST_54878 150864442 4837543 complement(join(2641223..2641637,2641704..2642140,2642196..2642219,2642231..2642764)) 1 NC_009042.1 predicted protein 2642764 4837543 PICST_54878 Pichia stipitis CBS 6054 predicted protein XP_001383255.2 2641223 R 322104 CDS PICST_30373 150864056 4837196 2643959..2645560 1 NC_009042.1 go_function: hydrolase activity; predicted protein 2645560 4837196 PICST_30373 Pichia stipitis CBS 6054 predicted protein XP_001382740.2 2643959 D 322104 CDS PICST_35327 126132432 4837529 2646733..2648028 1 NC_009042.1 go_function: signal transducer activity; go_process: G-protein coupled receptor protein signaling pathway; predicted protein 2648028 4837529 PICST_35327 Pichia stipitis CBS 6054 predicted protein XP_001382741.1 2646733 D 322104 CDS PICST_81500 126133462 4837554 complement(2648383..2649720) 1 NC_009042.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; ubiquinol-cytochrome c reductase core subunit 1 2649720 COR1 4837554 COR1 Pichia stipitis CBS 6054 ubiquinol-cytochrome c reductase core subunit 1 XP_001383256.1 2648383 R 322104 CDS PICST_30376 150864443 4836759 complement(2650305..2651408) 1 NC_009042.1 predicted protein 2651408 4836759 PICST_30376 Pichia stipitis CBS 6054 predicted protein XP_001383257.2 2650305 R 322104 CDS PICST_87815 126133466 4837135 complement(2651709..2652335) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2652335 4837135 PICST_87815 Pichia stipitis CBS 6054 predicted protein XP_001383258.1 2651709 R 322104 CDS PICST_30378 150864057 4837129 2653130..2654272 1 NC_009042.1 predicted protein 2654272 4837129 PICST_30378 Pichia stipitis CBS 6054 predicted protein XP_001382742.2 2653130 D 322104 CDS PICST_40400 150864444 4837597 complement(join(2654561..2654851,2654966..2655738,2655784..2655835)) 1 NC_009042.1 predicted protein 2655835 4837597 PICST_40400 Pichia stipitis CBS 6054 predicted protein XP_001383259.2 2654561 R 322104 CDS PICST_35330 126133470 4837056 complement(2656453..2656962) 1 NC_009042.1 go_component: mitochondrial membrane; integral to membrane; go_function: heme binding; go_process: tricarboxylic acid cycle; electron transport; membrane anchor in succinate dehydrogenase complex 2656962 SDH5 4837056 SDH5 Pichia stipitis CBS 6054 membrane anchor in succinate dehydrogenase complex XP_001383260.1 2656453 R 322104 CDS PICST_55643 126133472 4836811 complement(2657405..2657752) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2657752 4836811 PICST_55643 Pichia stipitis CBS 6054 predicted protein XP_001383261.1 2657405 R 322104 CDS PICST_40556 150864058 4836768 2658379..2659092 1 NC_009042.1 Riboflavin synthase alpha chain; riboflavin synthase 2659092 RIB5 4836768 RIB5 Pichia stipitis CBS 6054 riboflavin synthase XP_001382743.2 2658379 D 322104 CDS PICST_55763 126132438 4837115 2659535..2660119 1 NC_009042.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 2660119 4837115 PICST_55763 Pichia stipitis CBS 6054 predicted protein XP_001382744.1 2659535 D 322104 CDS PICST_67165 150864445 4837608 complement(join(2660293..2661155,2661297..2661348)) 1 NC_009042.1 go_function: ATP phosphoribosyltransferase activity; go_process: histidine biosynthesis; ATP phosphoribosyltransferase (ATP-PRTase) (ATP-PRT) 2661348 HIS1 4837608 HIS1 Pichia stipitis CBS 6054 ATP phosphoribosyltransferase (ATP-PRTase) (ATP-PRT) XP_001383262.2 2660293 R 322104 CDS PICST_41956 150864446 4836776 complement(2662056..2663087) 1 NC_009042.1 go_function: transferase activity; go_process: metabolism; predicted protein 2663087 4836776 PICST_41956 Pichia stipitis CBS 6054 predicted protein XP_001383263.2 2662056 R 322104 CDS PICST_70252 126132440 4836690 2663891..2665000 1 NC_009042.1 protein involved in a late step of 60S ribosomal subunit assembly or modification contains multiple WD repeats interacts with Qsr1p 2665000 SQT1 4836690 SQT1 Pichia stipitis CBS 6054 protein involved in a late step of 60S ribosomal subunit assembly or modification contains multiple WD repeats interacts with Qsr1p XP_001382745.1 2663891 D 322104 CDS PICST_55030 150864059 4837106 join(2665669..2666225,2666238..2666994) 1 NC_009042.1 DNA primase small subunit (DNA primase 48 kDa subunit) (p48); go_function: DNA primase activity; go_process: DNA replication, synthesis of RNA primer; p48 polypeptide of DNA primase 2666994 PRI1 4837106 PRI1 Pichia stipitis CBS 6054 p48 polypeptide of DNA primase XP_001382746.2 2665669 D 322104 CDS PICST_55209 150864447 4836789 complement(join(2667068..2667652,2667821..2669974)) 1 NC_009042.1 predicted protein 2669974 4836789 PICST_55209 Pichia stipitis CBS 6054 predicted protein XP_001383264.2 2667068 R 322104 CDS PICST_30390 150864060 4836685 2675321..2676700 1 NC_009042.1 predicted protein 2676700 4836685 PICST_30390 Pichia stipitis CBS 6054 predicted protein XP_001382747.2 2675321 D 322104 CDS PICST_70211 126133480 4837431 complement(2676811..2678166) 1 NC_009042.1 predicted protein 2678166 4837431 PICST_70211 Pichia stipitis CBS 6054 predicted protein XP_001383265.1 2676811 R 322104 CDS PICST_76461 150864061 4836724 2679708..2681036 1 NC_009042.1 go_component: clathrin vesicle coat; go_process: intracellular protein transport; predicted protein 2681036 4836724 PICST_76461 Pichia stipitis CBS 6054 predicted protein XP_001382748.2 2679708 D 322104 CDS PICST_56228 150864062 4836836 join(2681576..2681679,2681824..2682367) 1 NC_009042.1 predicted protein 2682367 4836836 PICST_56228 Pichia stipitis CBS 6054 predicted protein XP_001382749.2 2681576 D 322104 CDS PICST_75802 126133482 4837562 complement(2682624..2684438) 1 NC_009042.1 go_function: catalytic activity; go_process: metabolism; dihydroxyacid dehydratase 2684438 ILV3 4837562 ILV3 Pichia stipitis CBS 6054 dihydroxyacid dehydratase XP_001383266.1 2682624 R 322104 CDS PICST_40340 150864063 4836693 2685527..>2686048 1 NC_009042.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein >2686048 4836693 PICST_40340 Pichia stipitis CBS 6054 predicted protein XP_001382750.2 2685527 D 322104 CDS PICST_87256 126133484 4837242 complement(2686866..2687069) 1 NC_009042.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2687069 4837242 PICST_87256 Pichia stipitis CBS 6054 predicted protein XP_001383267.1 2686866 R 322104 CDS PICST_82031 150864448 4836712 complement(join(2687521..2688084,2688217..2688552,2688577..2689107,2689126..2689603,2689649..2690022)) 1 NC_009042.1 predicted protein 2690022 4836712 PICST_82031 Pichia stipitis CBS 6054 predicted protein XP_001383268.2 2687521 R 322104 CDS PICST_35345 126133488 4836775 complement(join(2693428..2693898,2693932..2693943)) 1 NC_009042.1 predicted protein 2693943 4836775 PICST_35345 Pichia stipitis CBS 6054 predicted protein XP_001383269.1 2693428 R 322104 CDS PICST_81589 150864064 4836802 join(2694478..2695706,2695767..2695994,2696067..>2696190) 1 NC_009042.1 predicted protein 2695994 4836802 PICST_81589 Pichia stipitis CBS 6054 predicted protein XP_001382751.2 2694478 D 322104 CDS PICST_54788 126132454 4836643 2698088..2699203 1 NC_009042.1 fatty acid desaturase Dihydroceramide delta(4)-desaturase; go_function: oxidoreductase activity; fatty acid desaturase (DSD1) 2699203 FAD3 4836643 FAD3 Pichia stipitis CBS 6054 fatty acid desaturase (DSD1) XP_001382752.1 2698088 D 322104 CDS PICST_70094 126133490 4837193 complement(2699354..2700964) 1 NC_009042.1 histidine tRNA synthetase Histidine--tRNA ligase; go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; protein biosynthesis; histidine tRNA synthetase 2700964 HTS1 4837193 HTS1 Pichia stipitis CBS 6054 histidine tRNA synthetase XP_001383270.1 2699354 R 322104 CDS PICST_87443 150864449 4837055 complement(2701538..2702896) 1 NC_009042.1 tryptophan 2,3- dioxygenase 2702896 BNA2 4837055 BNA2 Pichia stipitis CBS 6054 tryptophan 2,3- dioxygenase XP_001383271.2 2701538 R 322104 CDS PICST_67176 150864450 4836852 complement(join(2703912..2704732,2705100..2705127)) 1 NC_009042.1 go_function: peroxidase activity; go_process: response to oxidative stress; cytochrome c peroxidase 2705127 CCP2 4836852 CCP2 Pichia stipitis CBS 6054 cytochrome c peroxidase XP_001383272.2 2703912 R 322104 CDS PICST_67177 150864065 4836822 join(2706125..2707265,2707383..2707558) 1 NC_009042.1 go_process: endocytosis; predicted protein 2707558 4836822 PICST_67177 Pichia stipitis CBS 6054 predicted protein XP_001382753.2 2706125 D 322104 CDS PICST_41452 126133496 4837167 complement(2707875..2710430) 1 NC_009042.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; beta-glucosidase 2710430 BGL2 4837167 BGL2 Pichia stipitis CBS 6054 beta-glucosidase XP_001383273.1 2707875 R 322104 CDS PICST_54022 126132458 4836753 <2712996..2714498 1 NC_009042.1 probable hexose transporter closely related to D. hansenii proteins some similarity to GXS1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; probable hexose transporter 2714498 HXT2.3 4836753 HXT2.3 Pichia stipitis CBS 6054 probable hexose transporter XP_001382754.1 <2712996 D 322104 CDS PICST_55800 150864066 4836632 2719365..2720993 1 NC_009042.1 High-affinity glucose transporter, putative some similarity to GXS1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; High-affinity Glucose Transporter (putative) 2720993 HGT2 4836632 HGT2 Pichia stipitis CBS 6054 High-affinity Glucose Transporter (putative) XP_001382755.2 2719365 D 322104 CDS PICST_3529 150864067 4836797 <2723119..>2724294 1 NC_009042.1 hyphally regulated cell wall protein >2724294 HYR6.3 4836797 HYR6.3 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001382756.2 <2723119 D 322104 CDS PICST_30411 150864068 4836722 2731415..2733235 1 NC_009042.1 similar to ALS4; Aglutinin-Like Serine rich hypothetical protein 2733235 ALS4 4836722 ALS4 Pichia stipitis CBS 6054 Aglutinin-Like Serine rich hypothetical protein XP_001382757.2 2731415 D 322104 CDS PICST_30412 150864069 4836921 2734994..2735710 1 NC_009042.1 predicted protein 2735710 4836921 PICST_30412 Pichia stipitis CBS 6054 predicted protein XP_001382758.2 2734994 D 322104 CDS PICST_41479 126132468 4837120 <2737590..2739395 1 NC_009042.1 go_component: membrane; go_function: transporter activity; go_process: oligopeptide transport; predicted protein 2739395 4837120 PICST_41479 Pichia stipitis CBS 6054 predicted protein XP_001382759.1 <2737590 D 322104 CDS PICST_44235 150864451 4837774 2999..4192 1 NC_009043.1 predicted protein 4192 4837774 PICST_44235 Pichia stipitis CBS 6054 predicted protein XP_001383274.2 2999 D 322104 CDS PICST_56902 150864704 4837940 complement(join(<4506..5015,5079..6035)) 1 NC_009043.1 go_component: nucleus; go_function: DNA binding; zinc ion binding; go_process: transcription; predicted protein 6035 4837940 PICST_56902 Pichia stipitis CBS 6054 predicted protein XP_001383643.2 <4506 R 322104 CDS PICST_57936 150864452 4837692 7670..9292 1 NC_009043.1 Cyclohexanone monooxygenase steroid monooxygenase (CPM1) (Bacterial); Cyclopentanone 1,2-monooxygenase (CPMO) 9292 FMO5 4837692 FMO5 Pichia stipitis CBS 6054 Cyclopentanone 1,2-monooxygenase (CPMO) XP_001383275.2 7670 D 322104 CDS PICST_43205 150864453 4838007 join(13815..14878,16805..>16973) 1 NC_009043.1 hypothetical protein 14878 4838007 PICST_43205 Pichia stipitis CBS 6054 hypothetical protein XP_001383276.2 13815 D 322104 CDS PICST_57264 150864705 4837798 complement(21305..22831) 1 NC_009043.1 Transporter of Nicotinic Acid 22831 TNA11 4837798 TNA11 Pichia stipitis CBS 6054 Transporter of Nicotinic Acid XP_001383644.2 21305 R 322104 CDS PICST_67179 150864454 4837964 join(23716..23970,24047..24051,24132..26046) 1 NC_009043.1 similar to MIG2 and NRG1 transcription factor involved in glucose repression Ribonuc_L-PSP Endoribonuclease L-PSP; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; C2H2 zinc finger protein Ribonuc_L-PSP Endoribonuclease L-PSP 26046 MIG2.2 4837964 MIG2.2 Pichia stipitis CBS 6054 C2H2 zinc finger protein Ribonuc_L-PSP Endoribonuclease L-PSP XP_001383277.2 23716 D 322104 CDS PICST_35358 150864706 4838319 complement(26055..27131) 1 NC_009043.1 Arylacetamide deacetylase; putative esterase 27131 ACD2 4838319 ACD2 Pichia stipitis CBS 6054 putative esterase XP_001383645.2 26055 R 322104 CDS PICST_35359 150864455 4837848 27509..28783 1 NC_009043.1 go_function: alanine racemase activity; pyridoxal phosphate binding; predicted protein 28783 4837848 PICST_35359 Pichia stipitis CBS 6054 predicted protein XP_001383278.2 27509 D 322104 CDS PICST_83008 150864707 4837707 complement(28940..29893) 1 NC_009043.1 Dihydrodipicolinate synthase (DHDPS) putative; go_function: dihydrodipicolinate synthase activity; Dihydrodipicolinate synthase 29893 DAP1 4837707 DAP1 Pichia stipitis CBS 6054 Dihydrodipicolinate synthase XP_001383646.2 28940 R 322104 CDS PICST_67181 150864708 4837682 complement(30560..32413) 1 NC_009043.1 Protein localizes to actin cortical patches. Probable binding site on actin lies on front surface of subdomain 3 and 4; go_function: actin binding; go_process: actin filament depolymerization; actin cortical patch 32413 AIP1 4837682 AIP1 Pichia stipitis CBS 6054 actin cortical patch XP_001383647.2 30560 R 322104 CDS PICST_76840 150864456 4838164 32970..34616 1 NC_009043.1 Mitochondrial protein of unknown function 34616 FMP13 4838164 FMP13 Pichia stipitis CBS 6054 Mitochondrial protein of unknown function XP_001383279.2 32970 D 322104 CDS PICST_65353 150864457 4838049 34833..36317 1 NC_009043.1 go_component: actin cytoskeleton; go_function: structural constituent of cytoskeleton; actin-related protein 36317 ARP4 4838049 ARP4 Pichia stipitis CBS 6054 actin-related protein XP_001383280.2 34833 D 322104 CDS PICST_88710 150864458 4837935 37568..39673 1 NC_009043.1 go_function: alpha-amylase activity; hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; alpha-1,4-glucan branching enzyme 39673 GLC3 4837935 GLC3 Pichia stipitis CBS 6054 alpha-1,4-glucan branching enzyme XP_001383281.2 37568 D 322104 CDS PICST_67185 150864459 4838200 40238..42295 1 NC_009043.1 go_function: DNA binding; ATP-dependent DNA helicase activity; go_process: double-strand break repair via nonhomologous end-joining; predicted protein 42295 4838200 PICST_67185 Pichia stipitis CBS 6054 predicted protein XP_001383282.2 40238 D 322104 CDS PICST_43609 126134247 4838310 complement(42371..43480) 1 NC_009043.1 predicted protein 43480 4838310 PICST_43609 Pichia stipitis CBS 6054 predicted protein XP_001383648.1 42371 R 322104 CDS PICST_44319 126133517 4838170 43668..44543 1 NC_009043.1 predicted protein 44543 4838170 PICST_44319 Pichia stipitis CBS 6054 predicted protein XP_001383283.1 43668 D 322104 CDS PICST_82900 150864709 4837747 complement(44611..45357) 1 NC_009043.1 go_component: ribonucleoprotein complex; go_process: rRNA processing; predicted protein 45357 4837747 PICST_82900 Pichia stipitis CBS 6054 predicted protein XP_001383649.2 44611 R 322104 CDS PICST_2999 150864460 4838248 <45964..>47589 1 NC_009043.1 predicted protein >47589 4838248 PICST_2999 Pichia stipitis CBS 6054 predicted protein XP_001383284.2 <45964 D 322104 CDS PICST_44021 150864461 4838093 join(48000..48182,48288..48606,48760..49280) 1 NC_009043.1 predicted protein 49280 4838093 PICST_44021 Pichia stipitis CBS 6054 predicted protein XP_001383285.2 48000 D 322104 CDS PICST_30434 150864710 4837830 complement(join(49338..50473,50525..50843)) 1 NC_009043.1 predicted protein 50843 4837830 PICST_30434 Pichia stipitis CBS 6054 predicted protein XP_001383650.2 49338 R 322104 CDS PICST_43964 150864462 4838211 51295..>52038 1 NC_009043.1 predicted protein >52038 4838211 PICST_43964 Pichia stipitis CBS 6054 predicted protein XP_001383286.2 51295 D 322104 CDS PICST_43550 150864463 4838348 <52288..53004 1 NC_009043.1 go_function: nucleic acid binding; predicted protein 53004 4838348 PICST_43550 Pichia stipitis CBS 6054 predicted protein XP_001383287.2 <52288 D 322104 CDS PICST_17706 126133527 4838135 53621..>54757 1 NC_009043.1 positive regulator of meiosis, MAPK related ser/thr protein kinase dispensable for mitosis, stimulates early, middle and late gene expression and negatively regulates IME1; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; positive regulator of meiosis, MAPK related ser/thr protein kinase >54757 IME2 4838135 IME2 Pichia stipitis CBS 6054 positive regulator of meiosis, MAPK related ser/thr protein kinase XP_001383288.1 53621 D 322104 CDS PICST_57105 150864464 4838166 join(55626..55860,55922..56706) 1 NC_009043.1 predicted protein 56706 4838166 PICST_57105 Pichia stipitis CBS 6054 predicted protein XP_001383289.2 55626 D 322104 CDS PICST_44073 150864465 4838171 57137..58168 1 NC_009043.1 predicted protein 58168 4838171 PICST_44073 Pichia stipitis CBS 6054 predicted protein XP_001383290.2 57137 D 322104 CDS PICST_43167 150864466 4837732 58779..60167 1 NC_009043.1 high affinity nicotinic acid plasma membrane permease 60167 TNA1 4837732 TNA1 Pichia stipitis CBS 6054 high affinity nicotinic acid plasma membrane permease XP_001383291.2 58779 D 322104 CDS PICST_30440 150864467 4837926 60625..61593 1 NC_009043.1 predicted protein 61593 4837926 PICST_30440 Pichia stipitis CBS 6054 predicted protein XP_001383292.2 60625 D 322104 CDS PICST_44171 150864468 4838290 62365..63474 1 NC_009043.1 Putative NADPH:quinonereductase/dehydrogenase alcohol dehydrogenase; go_function: alcohol dehydrogenase activity, zinc-dependent; Zinc-binding oxidoreductase alcohol dehydrogenase 63474 IFR1 4838290 IFR1 Pichia stipitis CBS 6054 Zinc-binding oxidoreductase alcohol dehydrogenase XP_001383293.2 62365 D 322104 CDS PICST_35370 126133539 4837984 65018..66133 1 NC_009043.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; Zinc-binding oxidoreductase 66133 FDH2 4837984 FDH2 Pichia stipitis CBS 6054 Zinc-binding oxidoreductase XP_001383294.1 65018 D 322104 CDS PICST_67190 150864469 4837927 71677..73401 1 NC_009043.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 73401 4837927 PICST_67190 Pichia stipitis CBS 6054 predicted protein XP_001383295.2 71677 D 322104 CDS PICST_30446 150864470 4837900 76216..77760 1 NC_009043.1 predicted protein 77760 4837900 PICST_30446 Pichia stipitis CBS 6054 predicted protein XP_001383296.2 76216 D 322104 CDS PICST_30447 126133545 4838323 78220..78873 1 NC_009043.1 predicted protein 78873 4838323 PICST_30447 Pichia stipitis CBS 6054 predicted protein XP_001383297.1 78220 D 322104 CDS PICST_83026 150864471 4838165 join(79151..80586,80611..81505) 1 NC_009043.1 Required for processing of pre-tRNAs and the 5.8S rRNA precursor; nuclear RNase P and RNase MRP component 81505 POP1 4838165 POP1 Pichia stipitis CBS 6054 nuclear RNase P and RNase MRP component XP_001383298.2 79151 D 322104 CDS PICST_30449 150864711 4837925 complement(82260..83477) 1 NC_009043.1 go_component: nucleus; cytoplasm; predicted protein 83477 4837925 PICST_30449 Pichia stipitis CBS 6054 predicted protein XP_001383651.2 82260 R 322104 CDS PICST_77216 126134255 4837723 complement(84097..85818) 1 NC_009043.1 go_component: cytoplasm; go_function: tRNA ligase activity; ATP binding; nucleic acid binding; go_process: tRNA aminoacylation for protein translation; aspartyl-tRNA synthetase 85818 DPS1 4837723 DPS1 Pichia stipitis CBS 6054 aspartyl-tRNA synthetase XP_001383652.1 84097 R 322104 CDS PICST_56695 150864712 4837847 complement(105513..106370) 1 NC_009043.1 predicted protein 106370 4837847 PICST_56695 Pichia stipitis CBS 6054 predicted protein XP_001383653.2 105513 R 322104 CDS PICST_9461 150864472 4837934 <108998..>109252 1 NC_009043.1 predicted protein >109252 4837934 PICST_9461 Pichia stipitis CBS 6054 predicted protein XP_001383299.2 <108998 D 322104 CDS PICST_57730 150864473 4838333 join(110272..110640,110680..110738,110754..111123) 1 NC_009043.1 predicted protein 111123 4838333 PICST_57730 Pichia stipitis CBS 6054 predicted protein XP_001383300.2 110272 D 322104 CDS PICST_30456 150864713 4838297 complement(111410..111832) 1 NC_009043.1 predicted protein 111832 4838297 PICST_30456 Pichia stipitis CBS 6054 predicted protein XP_001383654.2 111410 R 322104 CDS PICST_44239 150864474 4838245 <113255..114376 1 NC_009043.1 predicted protein 114376 4838245 PICST_44239 Pichia stipitis CBS 6054 predicted protein XP_001383301.2 <113255 D 322104 CDS PICST_30458 150864714 4838048 complement(114745..115983) 1 NC_009043.1 predicted protein 115983 4838048 PICST_30458 Pichia stipitis CBS 6054 predicted protein XP_001383655.2 114745 R 322104 CDS PICST_57984 150864475 4838079 <116748..118223 1 NC_009043.1 go_function: glutamate-tRNA ligase activity; ATP binding; go_process: glutamyl-tRNA aminoacylation; glutamyl-tRNA synthetase, mitochondrial 118223 MSE1 4838079 MSE1 Pichia stipitis CBS 6054 glutamyl-tRNA synthetase, mitochondrial XP_001383302.2 <116748 D 322104 CDS PICST_30460 150864715 4837901 complement(118225..121506) 1 NC_009043.1 Structural maintenance of chromosome 5 (DNA repair protein spr18) (SMC partner of rad18); go_component: nucleus; go_function: ATP binding; go_process: chromosome segregation; structural maintenance of chromosomes protein 121506 SMC5 4837901 SMC5 Pichia stipitis CBS 6054 structural maintenance of chromosomes protein XP_001383656.2 118225 R 322104 CDS PICST_30461 126133557 4838065 join(121966..121968,122103..122531) 1 NC_009043.1 go_function: calcium ion binding; predicted protein 122531 4838065 PICST_30461 Pichia stipitis CBS 6054 predicted protein XP_001383303.1 121966 D 322104 CDS PICST_57018 126133559 4837991 122827..123411 1 NC_009043.1 predicted protein 123411 4837991 PICST_57018 Pichia stipitis CBS 6054 predicted protein XP_001383304.1 122827 D 322104 CDS PICST_42885 150864716 4838169 complement(123601..124788) 1 NC_009043.1 predicted protein 124788 4838169 PICST_42885 Pichia stipitis CBS 6054 predicted protein XP_001383657.2 123601 R 322104 CDS PICST_65359 126134267 4838349 complement(125163..126308) 1 NC_009043.1 associated with tRNA and amino acyl-tRNA synthetases GU4 nucleic-binding protein 1 (G4p1 protein) (P42) (ARC1 protein); go_function: tRNA binding; G4 quadruplex nucleic acid binding protein 126308 ARC1 4838349 ARC1 Pichia stipitis CBS 6054 G4 quadruplex nucleic acid binding protein XP_001383658.1 125163 R 322104 CDS PICST_77215 150864476 4837808 join(126975..127037,127126..127582,127679..128856) 1 NC_009043.1 transcriptional regulator (RDS2) possibly involved in heme regulation heme binding site; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; transcriptional regulator Regulator of drug sensitivity (RDS2) 128856 FST9 4837808 FST9 Pichia stipitis CBS 6054 transcriptional regulator Regulator of drug sensitivity (RDS2) XP_001383305.2 126975 D 322104 CDS PICST_56933 150864477 4837740 129353..130837 1 NC_009043.1 Probable metabolite transport protein; go_component: integral to membrane; go_function: transporter activity; go_process: transport; General substrate transporter 130837 YBR1 4837740 YBR1 Pichia stipitis CBS 6054 General substrate transporter XP_001383306.2 129353 D 322104 CDS PICST_77282 126133565 4838316 join(131376..131424,131869..132269) 1 NC_009043.1 60S ribosomal protein L28 (L27A) (L29) (YL24) (RP62); go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; large subunit ribosomal protein L27Ae (RPL28) 132269 RPL28 4838316 RPL28 Pichia stipitis CBS 6054 large subunit ribosomal protein L27Ae (RPL28) XP_001383307.1 131376 D 322104 CDS PICST_42834 126133567 4838213 <133015..133686 1 NC_009043.1 predicted protein 133686 4838213 PICST_42834 Pichia stipitis CBS 6054 predicted protein XP_001383308.1 <133015 D 322104 CDS PICST_35383 126133569 4837857 join(134445..134551,134609..134667,134758..135131) 1 NC_009043.1 predicted protein 135131 4837857 PICST_35383 Pichia stipitis CBS 6054 predicted protein XP_001383309.1 134445 D 322104 CDS PICST_30470 126133571 4837918 135600..136088 1 NC_009043.1 predicted protein 136088 4837918 PICST_30470 Pichia stipitis CBS 6054 predicted protein XP_001383310.1 135600 D 322104 CDS PICST_30471 126133573 4838123 137458..138399 1 NC_009043.1 first step in riboflavin biosynthesis; go_function: GTP cyclohydrolase II activity; go_process: riboflavin biosynthesis; GTP cyclohydrolase II 138399 RIB1 4838123 RIB1 Pichia stipitis CBS 6054 GTP cyclohydrolase II XP_001383311.1 137458 D 322104 CDS PICST_77168 150864478 4837929 join(139464..139856,139905..142235) 1 NC_009043.1 fungal Zn(2)-Cys(6) binuclear cluster zinc finger transcription factor; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; transcriptional regulator 142235 GIN1 4837929 GIN1 Pichia stipitis CBS 6054 transcriptional regulator XP_001383312.2 139464 D 322104 CDS PICST_57180 150864479 4838218 join(142502..142556,142572..143386) 1 NC_009043.1 related to RNA processing and transport; go_function: 3'-5'-exoribonuclease activity; RNA binding; go_process: RNA processing; exosome exoribonuclease 143386 MTR3 4838218 MTR3 Pichia stipitis CBS 6054 exosome exoribonuclease XP_001383313.2 142502 D 322104 CDS PICST_57055 150864717 4838121 complement(join(143545..145035,145060..146139)) 1 NC_009043.1 phosphatidyl- ethanolamine N-methyltransferase 146139 CHO2 4838121 CHO2 Pichia stipitis CBS 6054 phosphatidyl- ethanolamine N-methyltransferase XP_001383659.2 143545 R 322104 CDS PICST_82821 126134271 4838019 complement(join(147745..148112,148871..150013,150041..150122)) 1 NC_009043.1 go_function: nucleic acid binding; helicase activity; ATP binding; DEAD box RNA helicase 150122 DBP2 4838019 DBP2 Pichia stipitis CBS 6054 DEAD box RNA helicase XP_001383660.1 147745 R 322104 CDS PICST_65363 126134273 4838269 complement(150742..151101) 1 NC_009043.1 RNA polymerase I and III subunit 151101 RPC19 4838269 RPC19 Pichia stipitis CBS 6054 RNA polymerase I and III subunit XP_001383661.1 150742 R 322104 CDS PICST_30477 150864480 4838315 151813..153651 1 NC_009043.1 predicted protein 153651 4838315 PICST_30477 Pichia stipitis CBS 6054 predicted protein XP_001383314.2 151813 D 322104 CDS PICST_88332 150864481 4838025 join(156946..157097,157161..158274) 1 NC_009043.1 go_function: heme binding; DNA-binding transcription factor 158274 AZF1 4838025 AZF1 Pichia stipitis CBS 6054 DNA-binding transcription factor XP_001383315.2 156946 D 322104 CDS PICST_43429 150864482 4837753 158762..161086 1 NC_009043.1 predicted protein 161086 4837753 PICST_43429 Pichia stipitis CBS 6054 predicted protein XP_001383316.2 158762 D 322104 CDS PICST_30480 150864718 4837910 complement(join(161254..161269,161365..161753)) 1 NC_009043.1 predicted protein 161753 4837910 PICST_30480 Pichia stipitis CBS 6054 predicted protein XP_001383662.2 161254 R 322104 CDS PICST_57741 150864483 4837893 163591..166314 1 NC_009043.1 predicted protein 166314 4837893 PICST_57741 Pichia stipitis CBS 6054 predicted protein XP_001383317.2 163591 D 322104 CDS PICST_77218 126133587 4838350 167443..169125 1 NC_009043.1 Phosphoglucomutase 2 (Glucose phosphomutase 2) (PGM 1) (PGMU); go_function: intramolecular transferase activity, phosphotransferases; go_process: carbohydrate metabolism; phosphoglucomutase 169125 PGM2 4838350 PGM2 Pichia stipitis CBS 6054 phosphoglucomutase XP_001383318.1 167443 D 322104 CDS PICST_43119 126134277 4837909 complement(<171055..>171270) 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; zinc finger Dal80-like transcriptional repressor >171270 GZF3 4837909 GZF3 Pichia stipitis CBS 6054 zinc finger Dal80-like transcriptional repressor XP_001383663.1 <171055 R 322104 CDS PICST_30484 150864484 4838317 173801..174403 1 NC_009043.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 174403 4838317 PICST_30484 Pichia stipitis CBS 6054 predicted protein XP_001383319.2 173801 D 322104 CDS PICST_35392 126133591 4837721 176274..176873 1 NC_009043.1 Gtp-binding protein of the rho subfamily of ras-like proteins; go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein, rho subfamily 176873 RHO1 4837721 RHO1 Pichia stipitis CBS 6054 GTP-binding protein, rho subfamily XP_001383320.1 176274 D 322104 CDS PICST_82880 150864485 4838072 join(177787..179871,179887..180240) 1 NC_009043.1 go_component: clathrin coat of trans-Golgi network vesicle; go_process: protein complex assembly; intracellular protein transport; predicted protein 180240 4838072 PICST_82880 Pichia stipitis CBS 6054 predicted protein XP_001383321.2 177787 D 322104 CDS PICST_82840 126134279 4837895 complement(join(180432..181049,181077..182258)) 1 NC_009043.1 82-kDa subunit of RNA polymerase III (C); go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; subunit of RNA polymerase III (C) 182258 RPC82 4837895 RPC82 Pichia stipitis CBS 6054 subunit of RNA polymerase III (C) XP_001383664.1 180432 R 322104 CDS PICST_43936 150864486 4838318 182981..187222 1 NC_009043.1 dsRNA virus protection family member; antiviral protein 187222 SKI3 4838318 SKI3 Pichia stipitis CBS 6054 antiviral protein XP_001383322.2 182981 D 322104 CDS PICST_83006 150864487 4838362 join(189142..190070,190206..190294,190310..190758,190858..191360,191430..191533,191567..191770,191852..191913) 1 NC_009043.1 Autophagy-related protein 13 191913 ATG13 4838362 ATG13 Pichia stipitis CBS 6054 Autophagy-related protein 13 XP_001383323.2 189142 D 322104 CDS PICST_82575 126134281 4838270 complement(193210..194013) 1 NC_009043.1 Aquaporin (major intrinsic protein family); go_component: membrane; go_function: transporter activity; go_process: transport; aquaporin 194013 AQY1 4838270 AQY1 Pichia stipitis CBS 6054 aquaporin XP_001383665.1 193210 R 322104 CDS PICST_67211 150864719 4837741 complement(200827..201900) 1 NC_009043.1 predicted protein 201900 4837741 PICST_67211 Pichia stipitis CBS 6054 predicted protein XP_001383666.2 200827 R 322104 CDS PICST_67212 150864488 4837742 202487..208282 1 NC_009043.1 predicted protein 208282 4837742 PICST_67212 Pichia stipitis CBS 6054 predicted protein XP_001383324.2 202487 D 322104 CDS PICST_35397 150864720 4838167 complement(208465..209478) 1 NC_009043.1 Mitochondrial integral membrane protein, ornithine transporter (Yong-Su Jin[2006-01-06 12:10:29]); go_component: membrane; go_function: binding; go_process: transport; integral membrane ornithine transporter of mitochondria 209478 ORT2 4838167 ORT2 Pichia stipitis CBS 6054 integral membrane ornithine transporter of mitochondria XP_001383667.2 208465 R 322104 CDS PICST_30495 126134287 4837743 complement(210344..210907) 1 NC_009043.1 predicted protein 210907 4837743 PICST_30495 Pichia stipitis CBS 6054 predicted protein XP_001383668.1 210344 R 322104 CDS PICST_65369 150864489 4837744 join(211574..212309,212352..212356,212502..212546) 1 NC_009043.1 predicted protein 212546 4837744 PICST_65369 Pichia stipitis CBS 6054 predicted protein XP_001383325.2 211574 D 322104 CDS PICST_82790 150864721 4838090 complement(212814..215330) 1 NC_009043.1 with sequence similarity to human XPBC; go_function: nucleic acid binding; helicase activity; ATP binding; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; DNA helicase 215330 SSL2 4838090 SSL2 Pichia stipitis CBS 6054 DNA helicase XP_001383669.2 212814 R 322104 CDS PICST_30498 126134291 4837814 complement(215967..217025) 1 NC_009043.1 nonribosomal protein of the nucleolus and coiled bodies 217025 SRP40.1 4837814 SRP40.1 Pichia stipitis CBS 6054 nonribosomal protein of the nucleolus and coiled bodies XP_001383670.1 215967 R 322104 CDS PICST_67215 150864722 4837815 complement(217261..218427) 1 NC_009043.1 predicted protein 218427 4837815 PICST_67215 Pichia stipitis CBS 6054 predicted protein XP_001383671.2 217261 R 322104 CDS PICST_30500 150864723 4837816 complement(219272..220444) 1 NC_009043.1 predicted protein 220444 4837816 PICST_30500 Pichia stipitis CBS 6054 predicted protein XP_001383672.2 219272 R 322104 CDS PICST_57860 126133603 4837817 222465..223403 1 NC_009043.1 pantoate-beta- alanine ligase, pantothenic acid biosynthesis; go_function: pantoate-beta-alanine ligase activity; go_process: pantothenate biosynthesis; pantothenate synthase 223403 PAN4 4837817 PAN4 Pichia stipitis CBS 6054 pantothenate synthase XP_001383326.1 222465 D 322104 CDS PICST_30503 150864490 4837859 227195..227860 1 NC_009043.1 predicted protein 227860 4837859 PICST_30503 Pichia stipitis CBS 6054 predicted protein XP_001383327.2 227195 D 322104 CDS PICST_82631 150864724 4837867 complement(join(228001..229127,229176..229469,229563..229797)) 1 NC_009043.1 predicted protein 229797 4837867 PICST_82631 Pichia stipitis CBS 6054 predicted protein XP_001383673.2 228001 R 322104 CDS PICST_82538 126134299 4837818 complement(230617..231129) 1 NC_009043.1 predicted protein 231129 4837818 PICST_82538 Pichia stipitis CBS 6054 predicted protein XP_001383674.1 230617 R 322104 CDS PICST_30506 150864725 4837825 complement(231362..232264) 1 NC_009043.1 predicted protein 232264 4837825 PICST_30506 Pichia stipitis CBS 6054 predicted protein XP_001383675.2 231362 R 322104 CDS PICST_67218 150864491 4837826 236460..238013 1 NC_009043.1 HMG-domain site-specific DNA binding protein and regulator of filamentious growth; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; ROX1-like HMG-box transcription factor 238013 RFG1 4837826 RFG1 Pichia stipitis CBS 6054 ROX1-like HMG-box transcription factor XP_001383328.2 236460 D 322104 CDS PICST_58064 150864726 4838271 complement(join(242630..243244,243266..243730)) 1 NC_009043.1 predicted protein 243730 4838271 PICST_58064 Pichia stipitis CBS 6054 predicted protein XP_001383676.2 242630 R 322104 CDS PICST_57768 150864727 4837827 complement(join(244292..244370,244535..>245955)) 1 NC_009043.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; putative lactose permease 244370 LAC3 4837827 LAC3 Pichia stipitis CBS 6054 putative lactose permease XP_001383677.2 244292 R 322104 CDS PICST_43820 150864492 4837828 247143..249659 1 NC_009043.1 Glycoside hydrolase family 2, Beta-mannosidase precursor (Mannanase); beta-Galactosidase /glucuronidase domain; Galactose-binding domain; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; Glycoside hydrolase family 2 (Mannanase, beta-galactosidase) 249659 BMS1 4837828 BMS1 Pichia stipitis CBS 6054 Glycoside hydrolase family 2 (Mannanase, beta-galactosidase) XP_001383329.2 247143 D 322104 CDS PICST_30511 150864728 4838329 complement(250525..251889) 1 NC_009043.1 predicted protein 251889 4838329 PICST_30511 Pichia stipitis CBS 6054 predicted protein XP_001383678.2 250525 R 322104 CDS PICST_30513 150864493 4837829 255591..256358 1 NC_009043.1 predicted protein 256358 4837829 PICST_30513 Pichia stipitis CBS 6054 predicted protein XP_001383330.2 255591 D 322104 CDS PICST_43371 150864494 4837871 257438..259039 1 NC_009043.1 Rrp9p is an ortholog of the Homo sapiens U3-55k protein the Homo sapiens cDNA partially complements a yeast rrp9 null mutant.; part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) 259039 RRP9 4837871 RRP9 Pichia stipitis CBS 6054 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) XP_001383331.2 257438 D 322104 CDS PICST_43548 126134309 4837978 complement(259306..260007) 1 NC_009043.1 DNA-directed RNA polymerase III subunit, HMG-like 260007 RPC31 4837978 RPC31 Pichia stipitis CBS 6054 DNA-directed RNA polymerase III subunit, HMG-like XP_001383679.1 259306 R 322104 CDS PICST_30516 150864495 4837836 260780..262297 1 NC_009043.1 conserved hypothetical protein 262297 4837836 PICST_30516 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001383332.2 260780 D 322104 CDS PICST_67220 126134311 4838155 complement(263123..263884) 1 NC_009043.1 hypothetical protein; serine rich; hypothetical serine-rich protein 263884 4838155 PICST_67220 Pichia stipitis CBS 6054 hypothetical serine-rich protein XP_001383680.1 263123 R 322104 CDS PICST_57812 126134313 4837837 complement(266314..267780) 1 NC_009043.1 predicted protein 267780 4837837 PICST_57812 Pichia stipitis CBS 6054 predicted protein XP_001383681.1 266314 R 322104 CDS PICST_57799 126134315 4837838 complement(268535..269023) 1 NC_009043.1 go_function: carbonate dehydratase activity; zinc ion binding; go_process: carbon utilization; predicted protein 269023 4837838 PICST_57799 Pichia stipitis CBS 6054 predicted protein XP_001383682.1 268535 R 322104 CDS PICST_57548 126134317 4837839 complement(269552..270529) 1 NC_009043.1 UDP-glucose:dolichyl-phosphate glucosyltransferase 270529 ALG5 4837839 ALG5 Pichia stipitis CBS 6054 UDP-glucose:dolichyl-phosphate glucosyltransferase XP_001383683.1 269552 R 322104 CDS PICST_82650 150864729 4837840 complement(join(271267..272381,272625..272841,272869..272934)) 1 NC_009043.1 go_component: nucleus; go_function: polynucleotide 5'-phosphatase activity; go_process: mRNA capping; predicted protein 272934 4837840 PICST_82650 Pichia stipitis CBS 6054 predicted protein XP_001383684.2 271267 R 322104 CDS PICST_43870 126134321 4838320 complement(273556..274788) 1 NC_009043.1 go_function: oxidoreductase activity; go_process: metabolism; Isocitrate dehydrogenase [NADP] peroxisomal (Oxalosuccinate decarboxylase) (IDH) (PS-NADP-IDH) (CtIDP2) 274788 IDP2 4838320 IDP2 Pichia stipitis CBS 6054 Isocitrate dehydrogenase [NADP] peroxisomal (Oxalosuccinate decarboxylase) (IDH) (PS-NADP-IDH) (CtIDP2) XP_001383685.1 273556 R 322104 CDS PICST_57787 150864496 4838321 join(<277522..278121,278179..279549,279598..280236) 1 NC_009043.1 voltage-gated protein/chloride channel involved in intracellular iron metabolism (CLCN); go_component: membrane; go_function: voltage-gated chloride channel activity; go_process: chloride transport; voltage-gated protein/chloride channel 280236 CLC3 4838321 CLC3 Pichia stipitis CBS 6054 voltage-gated protein/chloride channel XP_001383333.2 <277522 D 322104 CDS PICST_30524 150864730 4837724 complement(join(280626..280647,280692..281911,281967..282068)) 1 NC_009043.1 predicted protein 282068 4837724 PICST_30524 Pichia stipitis CBS 6054 predicted protein XP_001383686.2 280626 R 322104 CDS PICST_35413 150864497 4838322 282433..283590 1 NC_009043.1 go_component: nucleus; go_function: methyltransferase activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism; predicted protein 283590 4838322 PICST_35413 Pichia stipitis CBS 6054 predicted protein XP_001383334.2 282433 D 322104 CDS PICST_30527 150864498 4838199 288662..289504 1 NC_009043.1 predicted protein 289504 4838199 PICST_30527 Pichia stipitis CBS 6054 predicted protein XP_001383335.2 288662 D 322104 CDS PICST_30528 150864499 4837954 289711..290760 1 NC_009043.1 predicted protein 290760 4837954 PICST_30528 Pichia stipitis CBS 6054 predicted protein XP_001383336.2 289711 D 322104 CDS PICST_76772 150864500 4838330 291592..293319 1 NC_009043.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; ATP-binding cassette transporter family member 293319 MDL1 4838330 MDL1 Pichia stipitis CBS 6054 ATP-binding cassette transporter family member XP_001383337.2 291592 D 322104 CDS PICST_191 150864501 4837716 join(<296834..297798,297850..298077,298261..298597,298706..>300922) 1 NC_009043.1 go_function: transferase activity, transferring hexosyl groups; go_process: carbohydrate metabolism; lipid glycosylation; Sterol 3-beta-glucosyltransferase (Autophagy-related protein 26) (UDP-glycosyltransferase 51) 298597 ATG26 4837716 ATG26 Pichia stipitis CBS 6054 Sterol 3-beta-glucosyltransferase (Autophagy-related protein 26) (UDP-glycosyltransferase 51) XP_001383338.2 <296834 D 322104 CDS PICST_76901 126133629 4837851 join(301959..302738,302763..303416) 1 NC_009043.1 Homoserine O-acetyltransferase (Homoserine O-trans-acetylase); homoserine O- acetyltransferase 303416 MET2 4837851 MET2 Pichia stipitis CBS 6054 homoserine O- acetyltransferase XP_001383339.1 301959 D 322104 CDS PICST_57530 126134325 4837850 complement(304231..>304944) 1 NC_009043.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein >304944 4837850 PICST_57530 Pichia stipitis CBS 6054 predicted protein XP_001383687.1 304231 R 322104 CDS PICST_43969 150864731 4838219 complement(306695..>307663) 1 NC_009043.1 Extra Cellular Matrix involved in cell wall biogenesis and architecture Glutathione transferase; Extra Cellular Matrix protein >307663 ECM4 4838219 ECM4 Pichia stipitis CBS 6054 Extra Cellular Matrix protein XP_001383688.2 306695 R 322104 CDS PICST_88383 150864502 4838220 309174..>310328 1 NC_009043.1 go_function: nucleic acid binding; helicase activity; ATP binding; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; ATP-dependent DNA helicase >310328 ADD1.2 4838220 ADD1.2 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001383340.2 309174 D 322104 CDS PICST_30535 150864503 4837852 311824..313386 1 NC_009043.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; SWI5-like zinc finger protein 313386 SWI5 4837852 SWI5 Pichia stipitis CBS 6054 SWI5-like zinc finger protein XP_001383341.2 311824 D 322104 CDS PICST_70932 150864732 4837959 complement(313576..316425) 1 NC_009043.1 go_function: DNA binding; ATP binding; DNA-dependent ATPase activity; go_process: DNA replication initiation; DNA replication licensing factor, MCM6 component 316425 MCM6 4837959 MCM6 Pichia stipitis CBS 6054 DNA replication licensing factor, MCM6 component XP_001383689.2 313576 R 322104 CDS PICST_30537 150864504 4838221 join(316912..316981,317088..317129,317198..317227,317303..>317823) 1 NC_009043.1 go_function: tRNA binding; predicted protein 317227 4838221 PICST_30537 Pichia stipitis CBS 6054 predicted protein XP_001383342.2 316912 D 322104 CDS PICST_77026 126134331 4837908 complement(317942..318712) 1 NC_009043.1 predicted protein 318712 4837908 PICST_77026 Pichia stipitis CBS 6054 predicted protein XP_001383690.1 317942 R 322104 CDS PICST_82707 150864733 4838222 complement(join(319217..319507,319580..321793,321854..322054)) 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 322054 4838222 PICST_82707 Pichia stipitis CBS 6054 predicted protein XP_001383691.2 319217 R 322104 CDS PICST_57744 150864505 4838282 join(327525..328880,328947..329098,329123..330296) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 330296 4838282 PICST_57744 Pichia stipitis CBS 6054 predicted protein XP_001383343.2 327525 D 322104 CDS PICST_44106 150864506 4837866 join(<331087..333066,333430..333876) 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; FKBP12-associated protein 333876 FAP1 4837866 FAP1 Pichia stipitis CBS 6054 FKBP12-associated protein XP_001383344.2 <331087 D 322104 CDS PICST_43653 150864734 4838356 complement(<334113..334754) 1 NC_009043.1 predicted protein 334754 4838356 PICST_43653 Pichia stipitis CBS 6054 predicted protein XP_001383692.2 <334113 R 322104 CDS PICST_58016 150864735 4838283 complement(join(335157..335997,336034..336143)) 1 NC_009043.1 phosphomutase homolog 336143 PMU2 4838283 PMU2 Pichia stipitis CBS 6054 phosphomutase homolog XP_001383693.2 335157 R 322104 CDS PICST_71431 150864507 4838284 join(337107..337361,337863..340031) 1 NC_009043.1 predicted protein 340031 4838284 PICST_71431 Pichia stipitis CBS 6054 predicted protein XP_001383345.2 337107 D 322104 CDS PICST_44052 150864736 4837748 complement(join(340257..340514,340590..341390,341424..342443)) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 342443 4837748 PICST_44052 Pichia stipitis CBS 6054 predicted protein XP_001383694.2 340257 R 322104 CDS PICST_57023 150864508 4838285 342908..344008 1 NC_009043.1 Mitotic spindle checkpoint protein; cell cycle arrest protein 344008 BUB3.1 4838285 BUB3.1 Pichia stipitis CBS 6054 cell cycle arrest protein XP_001383346.2 342908 D 322104 CDS PICST_44298 150864509 4837946 344432..346036 1 NC_009043.1 putative transcription regulator 346036 RMS1 4837946 RMS1 Pichia stipitis CBS 6054 putative transcription regulator XP_001383347.2 344432 D 322104 CDS PICST_58006 150864737 4837949 complement(join(<346484..346858,346964..347029,347042..349405)) 1 NC_009043.1 predicted protein 349405 4837949 PICST_58006 Pichia stipitis CBS 6054 predicted protein XP_001383695.2 <346484 R 322104 CDS PICST_18155 126134343 4838337 complement(<351585..>352889) 1 NC_009043.1 predicted protein >352889 4838337 PICST_18155 Pichia stipitis CBS 6054 predicted protein XP_001383696.1 <351585 R 322104 CDS PICST_44323 126134345 4838338 complement(<355659..356210) 1 NC_009043.1 predicted protein 356210 4838338 PICST_44323 Pichia stipitis CBS 6054 predicted protein XP_001383697.1 <355659 R 322104 CDS PICST_88209 150864738 4838339 complement(join(359090..359700,359758..361488,361531..361957,362264..362403,362680..362857)) 1 NC_009043.1 go_function: DNA binding; zinc ion binding; Fungal specific transcription factor 362857 FST1 4838339 FST1 Pichia stipitis CBS 6054 Fungal specific transcription factor XP_001383698.2 359090 R 322104 CDS PICST_56968 150864739 4838340 complement(join(363956..364136,364227..366345,366403..366848,367389..>367900)) 1 NC_009043.1 go_function: DNA binding; transcription factor activity; go_process: transcription; regulation of transcription, DNA-dependent; positive regulator of cytochrome C genes CYC1 and CYC7 366848 HAP4 4838340 HAP4 Pichia stipitis CBS 6054 positive regulator of cytochrome C genes CYC1 and CYC7 XP_001383699.2 363956 R 322104 CDS PICST_88189 150864510 4838311 join(371462..375023,375078..375286) 1 NC_009043.1 predicted protein 375286 4838311 PICST_88189 Pichia stipitis CBS 6054 predicted protein XP_001383348.2 371462 D 322104 CDS PICST_57811 126134351 4837948 complement(375362..376636) 1 NC_009043.1 go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; predicted protein 376636 4837948 PICST_57811 Pichia stipitis CBS 6054 predicted protein XP_001383700.1 375362 R 322104 CDS PICST_30556 150864511 4838312 377397..377990 1 NC_009043.1 predicted protein 377990 4838312 PICST_30556 Pichia stipitis CBS 6054 predicted protein XP_001383349.2 377397 D 322104 CDS PICST_30557 126133651 4837947 378662..379171 1 NC_009043.1 predicted protein 379171 4837947 PICST_30557 Pichia stipitis CBS 6054 predicted protein XP_001383350.1 378662 D 322104 CDS PICST_30558 150864740 4837976 complement(379292..381100) 1 NC_009043.1 predicted protein 381100 4837976 PICST_30558 Pichia stipitis CBS 6054 predicted protein XP_001383701.2 379292 R 322104 CDS PICST_58009 150864741 4838313 complement(join(381492..382284,382333..383786,383814..384710)) 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; Fungal transcriptional regulatory protein 384710 HAP1.2 4838313 HAP1.2 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001383702.2 381492 R 322104 CDS PICST_13887 126133653 4838291 <385567..>385857 1 NC_009043.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein >385857 4838291 PICST_13887 Pichia stipitis CBS 6054 predicted protein XP_001383351.1 <385567 D 322104 CDS PICST_42900 126134357 4837975 complement(386231..387700) 1 NC_009043.1 converts oxidized glutathine and NADPH into two glutathiones and NADP+; go_component: cytoplasm; go_function: disulfide oxidoreductase activity; oxidoreductase activity; go_process: electron transport; glutathione reductase 387700 GLR1 4837975 GLR1 Pichia stipitis CBS 6054 glutathione reductase XP_001383703.1 386231 R 322104 CDS PICST_57288 150864742 4838292 complement(join(388334..388578,388618..389402,389438..389451,389468..389827)) 1 NC_009043.1 hypothetical protein 389827 4838292 PICST_57288 Pichia stipitis CBS 6054 hypothetical protein XP_001383704.2 388334 R 322104 CDS PICST_82998 126133655 4838293 join(391005..391049,391546..391968) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 391968 4838293 PICST_82998 Pichia stipitis CBS 6054 predicted protein XP_001383352.1 391005 D 322104 CDS PICST_30564 150864743 4837977 complement(392365..392982) 1 NC_009043.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 392982 4837977 PICST_30564 Pichia stipitis CBS 6054 predicted protein XP_001383705.2 392365 R 322104 CDS PICST_82453 126133657 4838286 397785..399452 1 NC_009043.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; inorganic phosphate transporter, transmembrane protein 399452 PHO84 4838286 PHO84 Pichia stipitis CBS 6054 inorganic phosphate transporter, transmembrane protein XP_001383353.1 397785 D 322104 CDS PICST_30566 126134363 4837898 complement(join(400949..400965,401098..401153,401283..401524)) 1 NC_009043.1 predicted protein 401524 4837898 PICST_30566 Pichia stipitis CBS 6054 predicted protein XP_001383706.1 400949 R 322104 CDS PICST_30567 150864512 4838287 402610..403437 1 NC_009043.1 predicted protein 403437 4838287 PICST_30567 Pichia stipitis CBS 6054 predicted protein XP_001383354.2 402610 D 322104 CDS PICST_30568 126133661 4837717 403822..404352 1 NC_009043.1 predicted protein 404352 4837717 PICST_30568 Pichia stipitis CBS 6054 predicted protein XP_001383355.1 403822 D 322104 CDS PICST_67239 126133663 4838047 404981..405490 1 NC_009043.1 predicted protein 405490 4838047 PICST_67239 Pichia stipitis CBS 6054 predicted protein XP_001383356.1 404981 D 322104 CDS PICST_67240 150864744 4837864 complement(join(406007..407150,407462..407490)) 1 NC_009043.1 hypothetical protein 407490 4837864 PICST_67240 Pichia stipitis CBS 6054 hypothetical protein XP_001383707.2 406007 R 322104 CDS PICST_57225 150864745 4838288 complement(408643..412458) 1 NC_009043.1 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily; go_component: membrane; go_function: ATP binding; go_process: transport; ATP-dependent ABC transporter 412458 CDR5 4838288 CDR5 Pichia stipitis CBS 6054 ATP-dependent ABC transporter XP_001383708.2 408643 R 322104 CDS PICST_43180 126134369 4838289 complement(413371..414390) 1 NC_009043.1 predicted protein 414390 4838289 PICST_43180 Pichia stipitis CBS 6054 predicted protein XP_001383709.1 413371 R 322104 CDS PICST_56580 150864746 4838278 complement(414851..416398) 1 NC_009043.1 Cytochrome P450 52A12 (Alkane hydroxylase 1) (Alkane-inducible p450alk 1) (DH-ALK2); go_process: electron transport; Cytochrome P450 52A6 (CYPLIIA6) (Alkane-inducible P450-ALK3) 416398 CP52C 4838278 CP52C Pichia stipitis CBS 6054 Cytochrome P450 52A6 (CYPLIIA6) (Alkane-inducible P450-ALK3) XP_001383710.2 414851 R 322104 CDS PICST_2758 126134373 4838279 complement(<417943..>419226) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Serine/threonine protein kinase >419226 SKS1 4838279 SKS1 Pichia stipitis CBS 6054 Serine/threonine protein kinase XP_001383711.1 <417943 R 322104 CDS PICST_82625 150864747 4838280 complement(join(420462..421598,421617..422036)) 1 NC_009043.1 Galactokinase (Galactose kinase); go_function: ATP binding; kinase activity; go_process: phosphorylation; galactokinase 422036 GAL1 4838280 GAL1 Pichia stipitis CBS 6054 galactokinase XP_001383712.2 420462 R 322104 CDS PICST_76750 150864513 4838281 422919..424985 1 NC_009043.1 GAL10 bifunctional protein [Includes: UDP-glucose 4-epimerase (Galactowaldenase) Aldose 1-epimerase (Mutarotase)]; go_function: aldose 1-epimerase activity; catalytic activity; go_process: galactose metabolism; nucleotide-sugar metabolism; UDP glucose-4-epimerase 424985 GAL10 4838281 GAL10 Pichia stipitis CBS 6054 UDP glucose-4-epimerase XP_001383357.2 422919 D 322104 CDS PICST_56865 150864514 4838021 join(426060..426407,426483..426638) 1 NC_009043.1 go_component: Golgi cis-face; go_process: ER to Golgi transport; predicted protein 426638 4838021 PICST_56865 Pichia stipitis CBS 6054 predicted protein XP_001383358.2 426060 D 322104 CDS PICST_43810 150864748 4838146 complement(426862..427860) 1 NC_009043.1 UDP-glucose 4-epimerase; go_function: catalytic activity; go_process: nucleotide-sugar metabolism; putative dtdp-glucose 4,6-dehydratase 427860 GAL102 4838146 GAL102 Pichia stipitis CBS 6054 putative dtdp-glucose 4,6-dehydratase XP_001383713.2 426862 R 322104 CDS PICST_57493 150864515 4838181 428507..429646 1 NC_009043.1 go_function: UTP-hexose-1-phosphate uridylyltransferase activity; go_process: galactose metabolism; galactose-1-phosphate uridyl transferase 429646 GAL7 4838181 GAL7 Pichia stipitis CBS 6054 galactose-1-phosphate uridyl transferase XP_001383359.2 428507 D 322104 CDS PICST_71233 150864516 4837845 430041..431075 1 NC_009043.1 predicted protein 431075 4837845 PICST_71233 Pichia stipitis CBS 6054 predicted protein XP_001383360.2 430041 D 322104 CDS PICST_35437 150864749 4837983 complement(431225..432073) 1 NC_009043.1 go_component: cytoplasm; go_process: autophagy; predicted protein 432073 4837983 PICST_35437 Pichia stipitis CBS 6054 predicted protein XP_001383714.2 431225 R 322104 CDS PICST_30582 150864517 4838182 433101..434699 1 NC_009043.1 predicted protein 434699 4838182 PICST_30582 Pichia stipitis CBS 6054 predicted protein XP_001383361.2 433101 D 322104 CDS PICST_44269 126134381 4837973 complement(434814..435557) 1 NC_009043.1 go_function: molecular function unknown; predicted protein 435557 4837973 PICST_44269 Pichia stipitis CBS 6054 predicted protein XP_001383715.1 434814 R 322104 CDS PICST_65385 150864518 4838183 437216..439024 1 NC_009043.1 go_function: GTP binding; go_process: cell cycle; predicted protein 439024 4838183 PICST_65385 Pichia stipitis CBS 6054 predicted protein XP_001383362.2 437216 D 322104 CDS PICST_88418 150864519 4837897 440652..443264 1 NC_009043.1 protein involved in nuclear import required for the docking of import substrate to the nuclear membrane/pore identified as an rna1-1 synthetic lethal; go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; karyopherin-beta 443264 KAP95 4837897 KAP95 Pichia stipitis CBS 6054 karyopherin-beta XP_001383363.2 440652 D 322104 CDS PICST_57488 150864520 4838332 444447..445139 1 NC_009043.1 predicted protein 445139 4838332 PICST_57488 Pichia stipitis CBS 6054 predicted protein XP_001383364.2 444447 D 322104 CDS PICST_30587 150864750 4837896 complement(445403..446509) 1 NC_009043.1 go_component: nucleus; go_function: DNA binding; Zn finger-containing GTPase- Activating Protein for ARF 446509 GCS1 4837896 GCS1 Pichia stipitis CBS 6054 Zn finger-containing GTPase- Activating Protein for ARF XP_001383716.2 445403 R 322104 CDS PICST_57591 126134385 4838274 complement(447252..448118) 1 NC_009043.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 448118 4838274 PICST_57591 Pichia stipitis CBS 6054 predicted protein XP_001383717.1 447252 R 322104 CDS PICST_16362 150864751 4838275 complement(join(<449626..450364,450428..>451386)) 1 NC_009043.1 Protein predicted to be involved in carbohydrate metabolism; Platinum sensitivity protein 450364 PSY2 4838275 PSY2 Pichia stipitis CBS 6054 Platinum sensitivity protein XP_001383718.2 <449626 R 322104 CDS PICST_56516 150864752 4838276 complement(join(452397..452537,452583..452806,452825..>453365)) 1 NC_009043.1 F1-ATP synthase assembly protein 452806 ATP12 4838276 ATP12 Pichia stipitis CBS 6054 F1-ATP synthase assembly protein XP_001383719.2 452397 R 322104 CDS PICST_30591 126133681 4838277 453836..454192 1 NC_009043.1 predicted protein 454192 4838277 PICST_30591 Pichia stipitis CBS 6054 predicted protein XP_001383365.1 453836 D 322104 CDS PICST_30592 150864753 4837865 complement(454479..454814) 1 NC_009043.1 predicted protein 454814 4837865 PICST_30592 Pichia stipitis CBS 6054 predicted protein XP_001383720.2 454479 R 322104 CDS PICST_57978 150864754 4838177 complement(455147..456790) 1 NC_009043.1 go_function: catalytic activity; ATP binding; go_process: metabolism; fructose 2,6-bisphosphate metabolism; 6-phosphofructo-2-kinase 456790 FRK26.2 4838177 FRK26.2 Pichia stipitis CBS 6054 6-phosphofructo-2-kinase XP_001383721.2 455147 R 322104 CDS PICST_65387 126134395 4838178 complement(join(457994..458358,458837..458855)) 1 NC_009043.1 ribosomal protein L26A (L33A) (YL33) 458855 RPL26A 4838178 RPL26A Pichia stipitis CBS 6054 ribosomal protein L26A (L33A) (YL33) XP_001383722.1 457994 R 322104 CDS PICST_56763 126133683 4838179 <467337..467948 1 NC_009043.1 predicted protein 467948 4838179 PICST_56763 Pichia stipitis CBS 6054 predicted protein XP_001383366.1 <467337 D 322104 CDS PICST_16361 150864755 4837805 complement(<468409..>469707) 1 NC_009043.1 predicted protein >469707 4837805 PICST_16361 Pichia stipitis CBS 6054 predicted protein XP_001383723.2 <468409 R 322104 CDS PICST_14509 150864756 4838180 complement(join(<469963..471137,471219..471356,471414..471474,471502..>473379)) 1 NC_009043.1 predicted protein 471474 4838180 PICST_14509 Pichia stipitis CBS 6054 predicted protein XP_001383724.2 <469963 R 322104 CDS PICST_56609 150864757 4838172 complement(475388..475945) 1 NC_009043.1 go_function: GTP binding; predicted protein 475945 4838172 PICST_56609 Pichia stipitis CBS 6054 predicted protein XP_001383725.2 475388 R 322104 CDS PICST_56782 150864521 4838173 <476805..>478688 1 NC_009043.1 predicted protein >478688 4838173 PICST_56782 Pichia stipitis CBS 6054 predicted protein XP_001383367.2 <476805 D 322104 CDS PICST_71165 150864758 4837775 complement(479021..480688) 1 NC_009043.1 alpha-1,6-mannosyltransferase MNN11 (Mannan polymerase II complex MNN11 subunit) (M-Pol II subunit MNN11); go_component: integral to membrane; go_function: transferase activity, transferring hexosyl groups; mannosyltransferase complex component 480688 MNN11 4837775 MNN11 Pichia stipitis CBS 6054 mannosyltransferase complex component XP_001383726.2 479021 R 322104 CDS PICST_43715 150864759 4838174 complement(481720..482760) 1 NC_009043.1 predicted protein 482760 4838174 PICST_43715 Pichia stipitis CBS 6054 predicted protein XP_001383727.2 481720 R 322104 CDS PICST_67249 150864760 4838175 complement(483707..489376) 1 NC_009043.1 1,3-beta-D-glucan synthase subunit Highly similar to FKS1 (GSC1). GSC2 and FKS1 encode redundant catalytic components of 1,3-beta-glucan synthase. Deletion of both is lethal; go_component: 1,3-beta-glucan synthase complex; membrane; go_function: 1,3-beta-glucan synthase activity; go_process: beta-1,3 glucan biosynthesis; 1,3-beta-D-glucan synthase subunit (BGS3) (GSC2) 489376 GSL2 4838175 GSL2 Pichia stipitis CBS 6054 1,3-beta-D-glucan synthase subunit (BGS3) (GSC2) XP_001383728.2 483707 R 322104 CDS PICST_88690 150864761 4838125 complement(join(492787..493013,493101..494738,495270..495294)) 1 NC_009043.1 predicted protein 495294 4838125 PICST_88690 Pichia stipitis CBS 6054 predicted protein XP_001383729.2 492787 R 322104 CDS PICST_56611 150864762 4838126 complement(join(496059..496762,496838..497123)) 1 NC_009043.1 predicted protein 497123 4838126 PICST_56611 Pichia stipitis CBS 6054 predicted protein XP_001383730.2 496059 R 322104 CDS PICST_43008 126134413 4838127 complement(497664..498161) 1 NC_009043.1 predicted protein 498161 4838127 PICST_43008 Pichia stipitis CBS 6054 predicted protein XP_001383731.1 497664 R 322104 CDS PICST_77042 126133687 4838128 499023..499685 1 NC_009043.1 similar to members of the QM gene family, which is implicated in differentiation in other eukaryotes and tumorigenesis in humans homology to rat L10 ubiquinol-cytochrome C reductase complex subunit VI requiring protein; go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein L10 499685 RPL10 4838128 RPL10 Pichia stipitis CBS 6054 ribosomal protein L10 XP_001383368.1 499023 D 322104 CDS PICST_77262 126133689 4837955 500941..501696 1 NC_009043.1 involved in synthesis of GDP-mannose and dolichol-phosphate-mannose required for protein assembly in endoplasmic reticulum; go_component: cytoplasm; go_function: phosphomannomutase activity; go_process: mannose biosynthesis; phosphomannomutase 501696 PMM1 4837955 PMM1 Pichia stipitis CBS 6054 phosphomannomutase XP_001383369.1 500941 D 322104 CDS PICST_82629 150864763 4838046 complement(join(501953..502801,502841..503761)) 1 NC_009043.1 go_component: membrane; go_function: ATP binding; go_process: transport; predicted protein 503761 4838046 PICST_82629 Pichia stipitis CBS 6054 predicted protein XP_001383732.2 501953 R 322104 CDS PICST_88527 150864764 4838055 complement(504315..506375) 1 NC_009043.1 predicted protein 506375 4838055 PICST_88527 Pichia stipitis CBS 6054 predicted protein XP_001383733.2 504315 R 322104 CDS PICST_30611 150864522 4838056 506887..507501 1 NC_009043.1 predicted protein 507501 4838056 PICST_30611 Pichia stipitis CBS 6054 predicted protein XP_001383370.2 506887 D 322104 CDS PICST_65392 150864523 4838120 508132..508833 1 NC_009043.1 go_component: integral to membrane; go_process: intracellular protein transport; predicted protein 508833 4838120 PICST_65392 Pichia stipitis CBS 6054 predicted protein XP_001383371.2 508132 D 322104 CDS PICST_57025 150864524 4838023 join(<511191..511272,511351..512180) 1 NC_009043.1 Glucan 1,3-beta-glucosidase; cell wall glucanase Probable family 17 glucosidase SCW4 precursor (Soluble cell wall protein 4) 512180 SCW4.2 4838023 SCW4.2 Pichia stipitis CBS 6054 cell wall glucanase Probable family 17 glucosidase SCW4 precursor (Soluble cell wall protein 4) XP_001383372.2 <511191 D 322104 CDS PICST_76726 150864525 4838306 join(512584..513009,513052..515016) 1 NC_009043.1 go_function: DNA binding; predicted protein 515016 4838306 PICST_76726 Pichia stipitis CBS 6054 predicted protein XP_001383373.2 512584 D 322104 CDS PICST_35457 150864526 4838077 515285..516220 1 NC_009043.1 go_component: chromatin silencing complex; go_function: DNA binding; go_process: chromatin silencing; regulation of transcription, DNA-dependent; transcriptional regulatory protein 516220 SIR1 4838077 SIR1 Pichia stipitis CBS 6054 transcriptional regulatory protein XP_001383374.2 515285 D 322104 CDS PICST_30616 150864765 4838145 complement(516492..517220) 1 NC_009043.1 predicted protein 517220 4838145 PICST_30616 Pichia stipitis CBS 6054 predicted protein XP_001383734.2 516492 R 322104 CDS PICST_30617 150864766 4838057 complement(519625..520875) 1 NC_009043.1 HTX1 Zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila); go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 520875 ZIC3 4838057 ZIC3 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001383735.2 519625 R 322104 CDS PICST_71487 126134423 4838058 complement(521423..522913) 1 NC_009043.1 go_function: phenylalanine-tRNA ligase activity; ATP binding; go_process: phenylalanyl-tRNA aminoacylation; Phenylalanyl-tRNA synthetase, beta subunit, cytoplasmic 522913 FRS2 4838058 FRS2 Pichia stipitis CBS 6054 Phenylalanyl-tRNA synthetase, beta subunit, cytoplasmic XP_001383736.1 521423 R 322104 CDS PICST_35459 150864527 4838050 join(526789..526990,527084..529287) 1 NC_009043.1 predicted protein 529287 4838050 PICST_35459 Pichia stipitis CBS 6054 predicted protein XP_001383375.2 526789 D 322104 CDS PICST_82620 150864528 4838111 531267..533945 1 NC_009043.1 predicted protein 533945 4838111 PICST_82620 Pichia stipitis CBS 6054 predicted protein XP_001383376.2 531267 D 322104 CDS PICST_57386 126133705 4838073 <534694..535236 1 NC_009043.1 predicted protein 535236 4838073 PICST_57386 Pichia stipitis CBS 6054 predicted protein XP_001383377.1 <534694 D 322104 CDS PICST_65396 126134425 4838091 complement(535824..536426) 1 NC_009043.1 predicted protein 536426 4838091 PICST_65396 Pichia stipitis CBS 6054 predicted protein XP_001383737.1 535824 R 322104 CDS PICST_82752 126133707 4838051 536756..537265 1 NC_009043.1 go_component: mitochondrial outer membrane translocase complex; go_process: protein targeting; intracellular protein transport; predicted protein 537265 4838051 PICST_82752 Pichia stipitis CBS 6054 predicted protein XP_001383378.1 536756 D 322104 CDS PICST_57399 150864529 4837972 join(<537868..538663,538733..539313) 1 NC_009043.1 exo-1,3-beta-glucanase 539313 EXG1 4837972 EXG1 Pichia stipitis CBS 6054 exo-1,3-beta-glucanase XP_001383379.2 <537868 D 322104 CDS PICST_57619 150864530 4837917 539760..540839 1 NC_009043.1 go_function: homoserine dehydrogenase activity; go_process: amino acid biosynthesis; homoserine dehydrogenase 540839 HOM6 4837917 HOM6 Pichia stipitis CBS 6054 homoserine dehydrogenase XP_001383380.2 539760 D 322104 CDS PICST_82645 150864767 4837902 complement(join(540920..543216,543274..544933,544985..545224,545291..545563)) 1 NC_009043.1 go_process: intracellular signaling cascade; predicted protein 545563 4837902 PICST_82645 Pichia stipitis CBS 6054 predicted protein XP_001383738.2 540920 R 322104 CDS PICST_57121 150864768 4838052 complement(546043..546798) 1 NC_009043.1 predicted protein 546798 4838052 PICST_57121 Pichia stipitis CBS 6054 predicted protein XP_001383739.2 546043 R 322104 CDS PICST_57750 126133713 4838053 547719..548597 1 NC_009043.1 go_function: molecular function unknown; predicted protein 548597 4838053 PICST_57750 Pichia stipitis CBS 6054 predicted protein XP_001383381.1 547719 D 322104 CDS PICST_30629 150864769 4837686 complement(548729..550309) 1 NC_009043.1 go_component: membrane; go_process: transport; predicted protein 550309 4837686 PICST_30629 Pichia stipitis CBS 6054 predicted protein XP_001383740.2 548729 R 322104 CDS PICST_57189 150864531 4838054 551854..553566 1 NC_009043.1 go_component: membrane; go_process: transport; Proline-specific permease (Proline transport protein) 553566 PUT4.1 4838054 PUT4.1 Pichia stipitis CBS 6054 Proline-specific permease (Proline transport protein) XP_001383382.2 551854 D 322104 CDS PICST_82860 126133717 4837678 join(555752..556580,556699..557621) 1 NC_009043.1 go_component: membrane; go_process: transport; dicarboxylic amino acid permease 557621 DIP5.3 4837678 DIP5.3 Pichia stipitis CBS 6054 dicarboxylic amino acid permease XP_001383383.1 555752 D 322104 CDS PICST_56833 150864532 4837915 558580..>560010 1 NC_009043.1 go_component: nucleus; go_function: DNA binding; zinc ion binding; go_process: transcription; predicted protein >560010 4837915 PICST_56833 Pichia stipitis CBS 6054 predicted protein XP_001383384.2 558580 D 322104 CDS PICST_19605 150864533 4837676 <560565..>561689 1 NC_009043.1 predicted protein >561689 4837676 PICST_19605 Pichia stipitis CBS 6054 predicted protein XP_001383385.2 <560565 D 322104 CDS PICST_57770 150864770 4837708 complement(561755..563293) 1 NC_009043.1 predicted protein 563293 4837708 PICST_57770 Pichia stipitis CBS 6054 predicted protein XP_001383741.2 561755 R 322104 CDS PICST_43531 150864534 4838001 563571..565169 1 NC_009043.1 go_component: microtubule associated complex; go_function: motor activity; ATP binding; predicted protein 565169 4838001 PICST_43531 Pichia stipitis CBS 6054 predicted protein XP_001383386.2 563571 D 322104 CDS PICST_30636 150864535 4838250 join(565684..566220,566311..567099,567172..567384) 1 NC_009043.1 predicted protein 567384 4838250 PICST_30636 Pichia stipitis CBS 6054 predicted protein XP_001383387.2 565684 D 322104 CDS PICST_43443 150864536 4838191 567895..570117 1 NC_009043.1 Regulator of expression of the PTR2, GAP1, and BAP2 genes involved in the the control of peptide transport [Saccharomyces cerevisiae]; transcriptional regulator of peptide transport 570117 PTR3 4838191 PTR3 Pichia stipitis CBS 6054 transcriptional regulator of peptide transport XP_001383388.2 567895 D 322104 CDS PICST_77227 126133729 4838176 570653..572137 1 NC_009043.1 go_function: lyase activity; go_process: amino acid metabolism; cystathionine beta-synthase 572137 CYS4 4838176 CYS4 Pichia stipitis CBS 6054 cystathionine beta-synthase XP_001383389.1 570653 D 322104 CDS PICST_57286 150864771 4838018 complement(572406..573290) 1 NC_009043.1 go_function: DNA binding; transcription factor activity; go_process: RNA elongation; regulation of transcription, DNA-dependent; transcription; predicted protein 573290 4838018 PICST_57286 Pichia stipitis CBS 6054 predicted protein XP_001383742.2 572406 R 322104 CDS PICST_44112 150864537 4838002 573762..574466 1 NC_009043.1 predicted protein 574466 4838002 PICST_44112 Pichia stipitis CBS 6054 predicted protein XP_001383390.2 573762 D 322104 CDS PICST_30641 150864538 4837919 575254..575745 1 NC_009043.1 predicted protein 575745 4837919 PICST_30641 Pichia stipitis CBS 6054 predicted protein XP_001383391.2 575254 D 322104 CDS PICST_57900 126133735 4837679 576734..577306 1 NC_009043.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 577306 4837679 PICST_57900 Pichia stipitis CBS 6054 predicted protein XP_001383392.1 576734 D 322104 CDS PICST_30643 150864772 4837696 complement(578210..579955) 1 NC_009043.1 Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (GATA) (bacterial); go_function: amidase activity; Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) 579955 GTA1 4837696 GTA1 Pichia stipitis CBS 6054 Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) XP_001383743.2 578210 R 322104 CDS PICST_82497 126133737 4838003 580796..582010 1 NC_009043.1 predicted protein 582010 4838003 PICST_82497 Pichia stipitis CBS 6054 predicted protein XP_001383393.1 580796 D 322104 CDS PICST_57266 150864539 4838078 582347..583861 1 NC_009043.1 succinate-semialdehyde dehydrogenase similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN); go_function: oxidoreductase activity; go_process: metabolism; succinate-semialdehyde dehydrogenase NADP+ dependent 583861 UGA22 4838078 UGA22 Pichia stipitis CBS 6054 succinate-semialdehyde dehydrogenase NADP+ dependent XP_001383394.2 582347 D 322104 CDS PICST_67267 150864773 4838100 complement(583962..584807) 1 NC_009043.1 predicted protein 584807 4838100 PICST_67267 Pichia stipitis CBS 6054 predicted protein XP_001383744.2 583962 R 322104 CDS PICST_65402 150864774 4838004 complement(join(585111..586235,586282..586285,586405..587455,587618..588002)) 1 NC_009043.1 go_function: DNA binding; transcription factor activity; go_process: regulation of transcription, DNA-dependent; predicted protein 588002 4838004 PICST_65402 Pichia stipitis CBS 6054 predicted protein XP_001383745.2 585111 R 322104 CDS PICST_35479 150864775 4837725 complement(589168..590565) 1 NC_009043.1 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; go_function: transaminase activity; aminotransferase 590565 YOD1 4837725 YOD1 Pichia stipitis CBS 6054 aminotransferase XP_001383746.2 589168 R 322104 CDS PICST_82843 126133741 4837726 592163..594133 1 NC_009043.1 member of major facilitator superfamily multidrug-resistance protein 594133 HOL5 4837726 HOL5 Pichia stipitis CBS 6054 member of major facilitator superfamily multidrug-resistance protein XP_001383395.1 592163 D 322104 CDS PICST_30650 150864776 4837886 complement(594225..595286) 1 NC_009043.1 Protein necessary for structural stability of L-A double-stranded RNA-containing particles 595286 MAK32 4837886 MAK32 Pichia stipitis CBS 6054 Protein necessary for structural stability of L-A double-stranded RNA-containing particles XP_001383747.2 594225 R 322104 CDS PICST_43795 150864540 4837727 596444..598894 1 NC_009043.1 K(+)/H(+) antiporter 598894 KHA1 4837727 KHA1 Pichia stipitis CBS 6054 K(+)/H(+) antiporter XP_001383396.2 596444 D 322104 CDS PICST_88213 150864777 4838006 complement(598973..600847) 1 NC_009043.1 predicted protein 600847 4838006 PICST_88213 Pichia stipitis CBS 6054 predicted protein XP_001383748.2 598973 R 322104 CDS PICST_65404 150864778 4837728 complement(609608..610864) 1 NC_009043.1 predicted protein 610864 4837728 PICST_65404 Pichia stipitis CBS 6054 predicted protein XP_001383749.2 609608 R 322104 CDS PICST_42898 150864779 4837734 complement(join(611169..613941,613987..614390)) 1 NC_009043.1 endo-1,3-beta-glucanase 614390 ACF3 4837734 ACF3 Pichia stipitis CBS 6054 endo-1,3-beta-glucanase XP_001383750.2 611169 R 322104 CDS PICST_57912 150864541 4837735 615950..617032 1 NC_009043.1 go_function: oxidoreductase activity; go_process: electron transport; D-amino acid oxidase 617032 DAO1 4837735 DAO1 Pichia stipitis CBS 6054 D-amino acid oxidase XP_001383397.2 615950 D 322104 CDS PICST_71341 150864542 4838266 618042..618542 1 NC_009043.1 predicted protein 618542 4838266 PICST_71341 Pichia stipitis CBS 6054 predicted protein XP_001383398.2 618042 D 322104 CDS PICST_30658 150864543 4837689 619123..619977 1 NC_009043.1 DNA-directed DNA polymerase epsilon, subunit C 619977 DPB3 4837689 DPB3 Pichia stipitis CBS 6054 DNA-directed DNA polymerase epsilon, subunit C XP_001383399.2 619123 D 322104 CDS PICST_30659 150864780 4838136 complement(620139..623759) 1 NC_009043.1 predicted protein 623759 4838136 PICST_30659 Pichia stipitis CBS 6054 predicted protein XP_001383751.2 620139 R 322104 CDS PICST_77100 126133751 4837736 join(624399..624531,624810..625069) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 625069 4837736 PICST_77100 Pichia stipitis CBS 6054 predicted protein XP_001383400.1 624399 D 322104 CDS PICST_43323 126133753 4838186 625583..626134 1 NC_009043.1 predicted protein 626134 4838186 PICST_43323 Pichia stipitis CBS 6054 predicted protein XP_001383401.1 625583 D 322104 CDS PICST_67274 126134455 4837712 complement(626363..627202) 1 NC_009043.1 predicted protein 627202 4837712 PICST_67274 Pichia stipitis CBS 6054 predicted protein XP_001383752.1 626363 R 322104 CDS PICST_30663 150864781 4837737 complement(join(628117..628457,628511..628661,628714..628813,628868..629253)) 1 NC_009043.1 predicted protein 629253 4837737 PICST_30663 Pichia stipitis CBS 6054 predicted protein XP_001383753.2 628117 R 322104 CDS PICST_43942 126133755 4837738 629611..630114 1 NC_009043.1 predicted protein 630114 4837738 PICST_43942 Pichia stipitis CBS 6054 predicted protein XP_001383402.1 629611 D 322104 CDS PICST_30665 150864782 4838142 complement(630277..631377) 1 NC_009043.1 predicted protein 631377 4838142 PICST_30665 Pichia stipitis CBS 6054 predicted protein XP_001383754.2 630277 R 322104 CDS PICST_82902 150864783 4837739 complement(join(632289..633467,633483..633749)) 1 NC_009043.1 predicted protein 633749 4837739 PICST_82902 Pichia stipitis CBS 6054 predicted protein XP_001383755.2 632289 R 322104 CDS PICST_30667 150864544 4838357 634717..635271 1 NC_009043.1 predicted protein 635271 4838357 PICST_30667 Pichia stipitis CBS 6054 predicted protein XP_001383403.2 634717 D 322104 CDS PICST_71522 126134463 4837695 complement(635546..636172) 1 NC_009043.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein of the rab family 636172 YPT1 4837695 YPT1 Pichia stipitis CBS 6054 GTP-binding protein of the rab family XP_001383756.1 635546 R 322104 CDS PICST_35491 150864784 4838358 complement(637285..638136) 1 NC_009043.1 predicted protein 638136 4838358 PICST_35491 Pichia stipitis CBS 6054 predicted protein XP_001383757.2 637285 R 322104 CDS PICST_57331 126133759 4838359 639279..640331 1 NC_009043.1 adenosine kinase 640331 ADO1 4838359 ADO1 Pichia stipitis CBS 6054 adenosine kinase XP_001383404.1 639279 D 322104 CDS PICST_56859 150864545 4837920 join(640926..643347,643387..644153) 1 NC_009043.1 Aphidicolin-sensitive stimulated by yeast proliferating cell nuclear antigen (PCNA); go_function: DNA binding; DNA-directed DNA polymerase activity; go_process: transcription; DNA polymerase V that has motifs typical of DNA polymerase family 644153 POL5 4837920 POL5 Pichia stipitis CBS 6054 DNA polymerase V that has motifs typical of DNA polymerase family XP_001383405.2 640926 D 322104 CDS PICST_30672 150864785 4837690 complement(join(645252..647667,647767..647837)) 1 NC_009043.1 ATP-binding transporter, 3- prime end; go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; ATP-binding transporter 647837 MDL2 4837690 MDL2 Pichia stipitis CBS 6054 ATP-binding transporter XP_001383758.2 645252 R 322104 CDS PICST_88224 150864786 4838010 complement(648111..650192) 1 NC_009043.1 go_component: cytoplasm; go_function: dipeptidyl-peptidase III activity; go_process: proteolysis and peptidolysis; dipeptidyl-peptidase III (DPP III) (Dipeptidyl aminopeptidase III) (Dipeptidyl arylamidase III) 650192 DPP3 4838010 DPP3 Pichia stipitis CBS 6054 dipeptidyl-peptidase III (DPP III) (Dipeptidyl aminopeptidase III) (Dipeptidyl arylamidase III) XP_001383759.2 648111 R 322104 CDS PICST_30674 150864546 4838011 650884..651963 1 NC_009043.1 predicted protein 651963 4838011 PICST_30674 Pichia stipitis CBS 6054 predicted protein XP_001383406.2 650884 D 322104 CDS PICST_76889 150864547 4837841 join(652470..652706,652868..652874,652936..654194) 1 NC_009043.1 go_function: nucleic acid binding; PAB1 binding protein 654194 PBP2 4837841 PBP2 Pichia stipitis CBS 6054 PAB1 binding protein XP_001383407.2 652470 D 322104 CDS PICST_30676 150864787 4837933 complement(654706..656874) 1 NC_009043.1 predicted protein 656874 4837933 PICST_30676 Pichia stipitis CBS 6054 predicted protein XP_001383760.2 654706 R 322104 CDS PICST_43920 126134473 4838012 complement(657849..658865) 1 NC_009043.1 nuclear protein involved in release from glucose repression, invertase expression, and sporulation; 5'-AMP-activated protein kinase, gamma subunit 658865 SNF4 4838012 SNF4 Pichia stipitis CBS 6054 5'-AMP-activated protein kinase, gamma subunit XP_001383761.1 657849 R 322104 CDS PICST_57807 150864548 4838013 659378..660529 1 NC_009043.1 predicted protein 660529 4838013 PICST_57807 Pichia stipitis CBS 6054 predicted protein XP_001383408.2 659378 D 322104 CDS PICST_76708 150864788 4837903 complement(660629..663034) 1 NC_009043.1 nuclear pore protein Interacts with nuclear pore complex and participates in nucleocytoplasmic transport required for poly(A)+ RNA export; nuclear pore protein 663034 NUP82 4837903 NUP82 Pichia stipitis CBS 6054 nuclear pore protein XP_001383762.2 660629 R 322104 CDS PICST_57545 150864549 4838014 663638..664795 1 NC_009043.1 predicted protein 664795 4838014 PICST_57545 Pichia stipitis CBS 6054 predicted protein XP_001383409.2 663638 D 322104 CDS PICST_30681 150864550 4837674 665254..667623 1 NC_009043.1 predicted protein 667623 4837674 PICST_30681 Pichia stipitis CBS 6054 predicted protein XP_001383410.2 665254 D 322104 CDS PICST_30682 150864551 4837843 668510..669529 1 NC_009043.1 go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: carbohydrate metabolism; predicted protein 669529 4837843 PICST_30682 Pichia stipitis CBS 6054 predicted protein XP_001383411.2 668510 D 322104 CDS PICST_30683 150864789 4837932 complement(669597..671498) 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 671498 4837932 PICST_30683 Pichia stipitis CBS 6054 predicted protein XP_001383763.2 669597 R 322104 CDS PICST_57042 150864790 4837718 complement(join(671939..672194,672219..672666,672691..673072)) 1 NC_009043.1 go_function: oxidoreductase activity; go_process: electron transport; 12-oxophytodienoate reductase 1 (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (AtOPR1) (FS-AT-I) (OYE) 673072 OPR1 4837718 OPR1 Pichia stipitis CBS 6054 12-oxophytodienoate reductase 1 (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (AtOPR1) (FS-AT-I) (OYE) XP_001383764.2 671939 R 322104 CDS PICST_30685 126133775 4837719 673488..675215 1 NC_009043.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; allantoin transport 675215 DAL4.1 4837719 DAL4.1 Pichia stipitis CBS 6054 allantoin transport XP_001383412.1 673488 D 322104 CDS PICST_44044 150864791 4837958 complement(<675801..677120) 1 NC_009043.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; suppressor of gal11 null 677120 SGE1.1 4837958 SGE1.1 Pichia stipitis CBS 6054 suppressor of gal11 null XP_001383765.2 <675801 R 322104 CDS PICST_43525 126133777 4837720 <677707..679272 1 NC_009043.1 Glutamyl-tRNA(Gln) amidotransferase subunit A (amidase) (AMID1) (bacterial); go_function: amidase activity; Glutamyl-tRNA(Gln) amidotransferase subunit A (amidase) 679272 AMI1 4837720 AMI1 Pichia stipitis CBS 6054 Glutamyl-tRNA(Gln) amidotransferase subunit A (amidase) XP_001383413.1 <677707 D 322104 CDS PICST_56543 150864552 4838036 680294..682885 1 NC_009043.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; leucine--tRNA ligase 682885 NAM2 4838036 NAM2 Pichia stipitis CBS 6054 leucine--tRNA ligase XP_001383414.2 680294 D 322104 CDS PICST_30689 150864792 4838273 complement(683021..685348) 1 NC_009043.1 predicted protein 685348 4838273 PICST_30689 Pichia stipitis CBS 6054 predicted protein XP_001383766.2 683021 R 322104 CDS PICST_30690 150864553 4838151 685816..690564 1 NC_009043.1 predicted protein 690564 4838151 PICST_30690 Pichia stipitis CBS 6054 predicted protein XP_001383415.2 685816 D 322104 CDS PICST_82669 150864554 4838331 join(691255..691689,691708..691831,691844..693883,694031..694151,694449..694788) 1 NC_009043.1 putative nuclear pore protein; Nucleoskeletal protein 694788 NSP2 4838331 NSP2 Pichia stipitis CBS 6054 Nucleoskeletal protein XP_001383416.2 691255 D 322104 CDS PICST_30692 150864555 4838038 695847..698048 1 NC_009043.1 predicted protein 698048 4838038 PICST_30692 Pichia stipitis CBS 6054 predicted protein XP_001383417.2 695847 D 322104 CDS PICST_76943 150864556 4837971 join(699361..700084,700199..700300,700343..700710) 1 NC_009043.1 conserved hypothetical protein; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; hypothetical protein 700710 CTI6 4837971 CTI6 Pichia stipitis CBS 6054 hypothetical protein XP_001383418.2 699361 D 322104 CDS PICST_82683 150864793 4837714 complement(700830..702674) 1 NC_009043.1 Protein of the Sec1p family essential for vacuolar protein sorting required for the function of both Pep12p and the early endosome/late Golgi SNARE Tlg2p; go_function: protein transporter activity; go_process: protein secretion; vacuolar protein sorting associated protein 702674 VPS45 4837714 VPS45 Pichia stipitis CBS 6054 vacuolar protein sorting associated protein XP_001383767.2 700830 R 322104 CDS PICST_56651 150864794 4838152 complement(702929..>706153) 1 NC_009043.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein >706153 4838152 PICST_56651 Pichia stipitis CBS 6054 predicted protein XP_001383768.2 702929 R 322104 CDS PICST_44285 150864795 4838153 complement(707189..708286) 1 NC_009043.1 predicted protein 708286 4838153 PICST_44285 Pichia stipitis CBS 6054 predicted protein XP_001383769.2 707189 R 322104 CDS PICST_65414 150864557 4838154 join(709270..709716,709771..710625) 1 NC_009043.1 Transcription factor RBF1 (RPG-box-binding factor) (Repressor-activator protein 1) 710625 RBF1 4838154 RBF1 Pichia stipitis CBS 6054 Transcription factor RBF1 (RPG-box-binding factor) (Repressor-activator protein 1) XP_001383419.2 709270 D 322104 CDS PICST_88206 150864558 4837683 711479..714343 1 NC_009043.1 go_function: alanine-tRNA ligase activity; ATP binding; nucleic acid binding; go_process: alanyl-tRNA aminoacylation; Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS) 714343 ALA1 4837683 ALA1 Pichia stipitis CBS 6054 Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS) XP_001383420.2 711479 D 322104 CDS PICST_57074 150864796 4838361 complement(join(<714598..715017,715030..>715410)) 1 NC_009043.1 go_process: Mo-molybdopterin cofactor biosynthesis; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 715017 CIN1 4838361 CIN1 Pichia stipitis CBS 6054 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes XP_001383770.2 <714598 R 322104 CDS PICST_43575 126133793 4838156 718571..719512 1 NC_009043.1 go_function: hydrolase activity; predicted protein 719512 4838156 PICST_43575 Pichia stipitis CBS 6054 predicted protein XP_001383421.1 718571 D 322104 CDS PICST_57529 126134493 4837733 complement(720015..>724382) 1 NC_009043.1 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily; go_component: membrane; go_function: ATP binding; go_process: transport; ATP dependent transporter multidrug resistance (SNQ2) >724382 CDR2 4837733 CDR2 Pichia stipitis CBS 6054 ATP dependent transporter multidrug resistance (SNQ2) XP_001383771.1 720015 R 322104 CDS PICST_30704 150864797 4838157 complement(727829..729559) 1 NC_009043.1 predicted protein 729559 4838157 PICST_30704 Pichia stipitis CBS 6054 predicted protein XP_001383772.2 727829 R 322104 CDS PICST_30705 150864559 4838158 732064..733437 1 NC_009043.1 predicted protein 733437 4838158 PICST_30705 Pichia stipitis CBS 6054 predicted protein XP_001383422.2 732064 D 322104 CDS PICST_67289 150864560 4837806 join(733977..734004,734120..735975,736089..736601) 1 NC_009043.1 Spliced mRNA and Cell cycle regulated gene 736601 SRC1 4837806 SRC1 Pichia stipitis CBS 6054 Spliced mRNA and Cell cycle regulated gene XP_001383423.2 733977 D 322104 CDS PICST_30707 150864798 4838307 complement(736825..737991) 1 NC_009043.1 predicted protein 737991 4838307 PICST_30707 Pichia stipitis CBS 6054 predicted protein XP_001383773.2 736825 R 322104 CDS PICST_67290 150864561 4838159 740090..741877 1 NC_009043.1 predicted protein 741877 4838159 PICST_67290 Pichia stipitis CBS 6054 predicted protein XP_001383424.2 740090 D 322104 CDS PICST_82401 126133801 4838163 742828..743526 1 NC_009043.1 go_component: integral to membrane; predicted protein 743526 4838163 PICST_82401 Pichia stipitis CBS 6054 predicted protein XP_001383425.1 742828 D 322104 CDS PICST_67292 126133803 4837688 744346..745758 1 NC_009043.1 go_function: glycine hydroxymethyltransferase activity; go_process: glycine metabolism; L-serine metabolism; serine hydroxymethyltransferase 745758 SHM2 4837688 SHM2 Pichia stipitis CBS 6054 serine hydroxymethyltransferase XP_001383426.1 744346 D 322104 CDS PICST_57820 126134499 4838168 complement(<746979..748565) 1 NC_009043.1 sugar transporter strongly conserved; go_component: integral to membrane; go_function: transporter activity; go_process: transport; sugar transporter 748565 STL1 4838168 STL1 Pichia stipitis CBS 6054 sugar transporter XP_001383774.1 <746979 R 322104 CDS PICST_88627 150864799 4838081 complement(750073..751788) 1 NC_009043.1 hemolysin III domain membrane protein; go_component: integral to membrane; conserved hypothetical protein 751788 HDT2 4838081 HDT2 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001383775.2 750073 R 322104 CDS PICST_30713 150864800 4838082 complement(752420..754699) 1 NC_009043.1 predicted protein 754699 4838082 PICST_30713 Pichia stipitis CBS 6054 predicted protein XP_001383776.2 752420 R 322104 CDS PICST_30714 150864562 4838083 756286..757350 1 NC_009043.1 predicted protein 757350 4838083 PICST_30714 Pichia stipitis CBS 6054 predicted protein XP_001383427.2 756286 D 322104 CDS PICST_30715 150864801 4837694 complement(757666..760452) 1 NC_009043.1 go_process: intracellular signaling cascade; predicted protein 760452 4837694 PICST_30715 Pichia stipitis CBS 6054 predicted protein XP_001383777.2 757666 R 322104 CDS PICST_30716 150864563 4838205 join(761096..761905,762391..763185) 1 NC_009043.1 go_function: GTP binding; nuclear/nucleolar GTP-binding protein 2 763185 NOG2 4838205 NOG2 Pichia stipitis CBS 6054 nuclear/nucleolar GTP-binding protein 2 XP_001383428.2 761096 D 322104 CDS PICST_88664 150864802 4838363 complement(join(763465..764597,764649..764922)) 1 NC_009043.1 go_component: nucleus; go_function: transcriptional repressor activity; go_process: negative regulation of transcription; predicted protein 764922 4838363 PICST_88664 Pichia stipitis CBS 6054 predicted protein XP_001383778.2 763465 R 322104 CDS PICST_44336 150864803 4838206 complement(765724..766950) 1 NC_009043.1 go_component: membrane; go_function: molecular function unknown; predicted protein 766950 4838206 PICST_44336 Pichia stipitis CBS 6054 predicted protein XP_001383779.2 765724 R 322104 CDS PICST_30719 150864804 4838207 complement(767354..768889) 1 NC_009043.1 go_component: intracellular; nucleus; go_function: protein transporter activity; go_process: protein-nucleus import; predicted protein 768889 4838207 PICST_30719 Pichia stipitis CBS 6054 predicted protein XP_001383780.2 767354 R 322104 CDS PICST_71285 150864805 4837749 complement(769603..770265) 1 NC_009043.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 770265 4837749 PICST_71285 Pichia stipitis CBS 6054 predicted protein XP_001383781.2 769603 R 322104 CDS PICST_65421 150864806 4837750 complement(770780..776515) 1 NC_009043.1 predicted protein 776515 4837750 PICST_65421 Pichia stipitis CBS 6054 predicted protein XP_001383782.2 770780 R 322104 CDS PICST_82544 150864807 4837751 complement(777996..779672) 1 NC_009043.1 predicted protein 779672 4837751 PICST_82544 Pichia stipitis CBS 6054 predicted protein XP_001383783.2 777996 R 322104 CDS PICST_57998 150864564 4837752 781086..781784 1 NC_009043.1 predicted protein 781784 4837752 PICST_57998 Pichia stipitis CBS 6054 predicted protein XP_001383429.2 781086 D 322104 CDS PICST_71543 126134519 4838209 complement(782238..782489) 1 NC_009043.1 go_component: mitochondrion; go_function: cytochrome-c oxidase activity; go_process: electron transport; Cytochrome c oxidase polypeptide vib 782489 COX12 4838209 COX12 Pichia stipitis CBS 6054 Cytochrome c oxidase polypeptide vib XP_001383784.1 782238 R 322104 CDS PICST_30725 150864808 4837992 complement(783096..783548) 1 NC_009043.1 predicted protein 783548 4837992 PICST_30725 Pichia stipitis CBS 6054 predicted protein XP_001383785.2 783096 R 322104 CDS PICST_30726 150864809 4837993 complement(join(783667..784378,784498..784565)) 1 NC_009043.1 predicted protein 784565 4837993 PICST_30726 Pichia stipitis CBS 6054 predicted protein XP_001383786.2 783667 R 322104 CDS PICST_30727 126133811 4837994 785165..785644 1 NC_009043.1 predicted protein 785644 4837994 PICST_30727 Pichia stipitis CBS 6054 predicted protein XP_001383430.1 785165 D 322104 CDS PICST_44075 126133813 4838193 786476..787615 1 NC_009043.1 go_function: transaminase activity; go_process: metabolism; predicted protein 787615 4838193 PICST_44075 Pichia stipitis CBS 6054 predicted protein XP_001383431.1 786476 D 322104 CDS PICST_56634 126133815 4837693 788699..790567 1 NC_009043.1 transporter of the inner mitochondrial membrane oriented with a probable ATP-binding site in the matrix, so that it could function to export substrates from the matrix to the cytoplasm; go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; mitochondrial ABC transporter 790567 ATM1 4837693 ATM1 Pichia stipitis CBS 6054 mitochondrial ABC transporter XP_001383432.1 788699 D 322104 CDS PICST_30730 150864565 4837899 793552..794625 1 NC_009043.1 hypothetical protein 794625 4837899 PICST_30730 Pichia stipitis CBS 6054 hypothetical protein XP_001383433.2 793552 D 322104 CDS PICST_43257 150864810 4837980 complement(795603..798449) 1 NC_009043.1 go_function: membrane alanyl aminopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 798449 4837980 PICST_43257 Pichia stipitis CBS 6054 predicted protein XP_001383787.2 795603 R 322104 CDS PICST_57761 150864566 4837995 join(800798..801118,801164..802327) 1 NC_009043.1 predicted protein 802327 4837995 PICST_57761 Pichia stipitis CBS 6054 predicted protein XP_001383434.2 800798 D 322104 CDS PICST_56779 150864567 4837781 join(<803749..804000,804076..804793,804836..805071) 1 NC_009043.1 predicted protein 805071 4837781 PICST_56779 Pichia stipitis CBS 6054 predicted protein XP_001383435.2 <803749 D 322104 CDS PICST_30734 150864811 4837877 complement(805268..806446) 1 NC_009043.1 cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (CYSK2); go_function: lyase activity; go_process: amino acid metabolism; cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) 806446 CYK2 4837877 CYK2 Pichia stipitis CBS 6054 cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) XP_001383788.2 805268 R 322104 CDS PICST_57681 126133823 4837996 join(<808917..811001,811053..811338,811354..811541) 1 NC_009043.1 cutinase transcription factor 1 alpha potential fungal Zn(2)-Cys(6) binuclear cluster domain; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain 811541 CTF1 4837996 CTF1 Pichia stipitis CBS 6054 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain XP_001383436.1 <808917 D 322104 CDS PICST_30736 150864812 4838022 complement(811709..812869) 1 NC_009043.1 predicted protein 812869 4838022 PICST_30736 Pichia stipitis CBS 6054 predicted protein XP_001383789.2 811709 R 322104 CDS PICST_30737 150864568 4838039 813087..813647 1 NC_009043.1 predicted protein 813647 4838039 PICST_30737 Pichia stipitis CBS 6054 predicted protein XP_001383437.2 813087 D 322104 CDS PICST_57363 150864813 4837675 complement(join(813791..814120,814142..>815884)) 1 NC_009043.1 go_function: catalytic activity; nutrient reservoir activity; predicted protein 814120 4837675 PICST_57363 Pichia stipitis CBS 6054 predicted protein XP_001383790.2 813791 R 322104 CDS PICST_44113 150864569 4838040 817244..817969 1 NC_009043.1 go_function: catalytic activity; go_process: metabolism; predicted protein 817969 4838040 PICST_44113 Pichia stipitis CBS 6054 predicted protein XP_001383438.2 817244 D 322104 CDS PICST_82779 150864814 4838295 complement(join(818254..819017,819069..819339,819640..819705)) 1 NC_009043.1 nucleotide excision repair protein (ubiquitin-like protein) 819705 RAD23 4838295 RAD23 Pichia stipitis CBS 6054 nucleotide excision repair protein (ubiquitin-like protein) XP_001383791.2 818254 R 322104 CDS PICST_2329 150864570 4838041 <820437..>822293 1 NC_009043.1 nucleotide excision repair protein >822293 RAD7 4838041 RAD7 Pichia stipitis CBS 6054 nucleotide excision repair protein XP_001383439.2 <820437 D 322104 CDS PICST_82941 150864815 4838138 complement(822386..824509) 1 NC_009043.1 May function to facilitate or stabilize the interaction between U1 snRNP and the 5' splice site in pre-mRNAs; pre-mRNA splicing factor 824509 PRP39 4838138 PRP39 Pichia stipitis CBS 6054 pre-mRNA splicing factor XP_001383792.2 822386 R 322104 CDS PICST_56888 150864571 4838042 join(824739..826262,826290..826505) 1 NC_009043.1 associated with U1 snRNP 826505 SNU71 4838042 SNU71 Pichia stipitis CBS 6054 associated with U1 snRNP XP_001383440.2 824739 D 322104 CDS PICST_67305 126133833 4837905 838216..838671 1 NC_009043.1 predicted protein 838671 4837905 PICST_67305 Pichia stipitis CBS 6054 predicted protein XP_001383441.1 838216 D 322104 CDS PICST_57510 126133835 4838043 841874..842227 1 NC_009043.1 predicted protein 842227 4838043 PICST_57510 Pichia stipitis CBS 6054 predicted protein XP_001383442.1 841874 D 322104 CDS PICST_30747 126134537 4838044 complement(842572..843288) 1 NC_009043.1 predicted protein 843288 4838044 PICST_30747 Pichia stipitis CBS 6054 predicted protein XP_001383793.1 842572 R 322104 CDS PICST_30748 126133837 4837729 843586..843960 1 NC_009043.1 predicted protein 843960 4837729 PICST_30748 Pichia stipitis CBS 6054 predicted protein XP_001383443.1 843586 D 322104 CDS PICST_67306 150864572 4838074 846327..848426 1 NC_009043.1 serine rich protein with possible protein kinase and chitinase domains probable cell wall protein mucin-like; possibly part of mannoprotein possibly involved in adhesion; mucin-like protein with chitinase features 848426 MUC1.9 4838074 MUC1.9 Pichia stipitis CBS 6054 mucin-like protein with chitinase features XP_001383444.2 846327 D 322104 CDS PICST_35527 126134539 4837680 complement(848982..849464) 1 NC_009043.1 succinate dehydrogenase (ubiquinone) cytochrome b subunit precursor (SDH3); go_component: membrane; go_function: succinate dehydrogenase activity; go_process: tricarboxylic acid cycle; electron transport; succinate dehydrogenase 849464 SDH6 4837680 SDH6 Pichia stipitis CBS 6054 succinate dehydrogenase XP_001383794.1 848982 R 322104 CDS PICST_67308 150864573 4837730 850830..853340 1 NC_009043.1 possibly involved in Phosphatidylinositol 3-phosphate binding; go_function: zinc ion binding; Zn finger protein 853340 PIB2 4837730 PIB2 Pichia stipitis CBS 6054 Zn finger protein XP_001383445.2 850830 D 322104 CDS PICST_82607 150864574 4837713 854233..856470 1 NC_009043.1 go_component: membrane; go_function: oligosaccharyl transferase activity; go_process: protein amino acid glycosylation; oligosaccharyl transferase subunit 856470 STT3 4837713 STT3 Pichia stipitis CBS 6054 oligosaccharyl transferase subunit XP_001383446.2 854233 D 322104 CDS PICST_44311 126133845 4838117 856996..857571 1 NC_009043.1 hypothetical membrane protein 857571 4838117 PICST_44311 Pichia stipitis CBS 6054 hypothetical membrane protein XP_001383447.1 856996 D 322104 CDS PICST_57562 150864816 4838116 complement(join(857672..859116,859138..859288)) 1 NC_009043.1 appears to activate IME1 in response to cell-type and nutritional signals and thereby regulate meiosis; go_component: nucleus; go_function: methyltransferase activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid metabolism; activator of IME1 Predicted N6-adenine RNA methylase IME4 859288 IME4 4838116 IME4 Pichia stipitis CBS 6054 activator of IME1 Predicted N6-adenine RNA methylase IME4 XP_001383795.2 857672 R 322104 CDS PICST_82711 150864817 4837731 complement(join(859641..859970,860034..860498,860604..861092,861135..862474,862517..862791,862828..863177,863261..863467)) 1 NC_009043.1 SH3 domain protein involved in assembly of cortical actin cytoskeleton 863467 SLA1 4837731 SLA1 Pichia stipitis CBS 6054 SH3 domain protein involved in assembly of cortical actin cytoskeleton XP_001383796.2 859641 R 322104 CDS PICST_30756 150864818 4838202 complement(863835..865568) 1 NC_009043.1 go_function: protein dimerization activity; hypothetical protein 865568 4838202 PICST_30756 Pichia stipitis CBS 6054 hypothetical protein XP_001383797.2 863835 R 322104 CDS PICST_43416 150864819 4838203 complement(865907..867004) 1 NC_009043.1 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily); go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; go_process: L-serine biosynthesis; hydroxyisocaproate dehydrogenase 867004 MDH99 4838203 MDH99 Pichia stipitis CBS 6054 hydroxyisocaproate dehydrogenase XP_001383798.2 865907 R 322104 CDS PICST_88762 150864820 4838204 complement(868228..868692) 1 NC_009043.1 go_component: mitochondrial membrane; go_function: cytochrome-c oxidase activity; go_process: electron transport; Cytochrome c oxidase polypeptide IV, mitochondrial precursor 868692 COX4 4838204 COX4 Pichia stipitis CBS 6054 Cytochrome c oxidase polypeptide IV, mitochondrial precursor XP_001383799.2 868228 R 322104 CDS PICST_77120 126133847 4837782 870354..870713 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S small subunit ribosomal protein S26A 870713 RPS26A 4837782 RPS26A Pichia stipitis CBS 6054 40S small subunit ribosomal protein S26A XP_001383448.1 870354 D 322104 CDS PICST_65430 150864575 4838160 872164..873660 1 NC_009043.1 Protein phosphatase PP2A regulatory subunit B (PR55) (Cell division control protein 55) 873660 CDC55 4838160 CDC55 Pichia stipitis CBS 6054 Protein phosphatase PP2A regulatory subunit B (PR55) (Cell division control protein 55) XP_001383449.2 872164 D 322104 CDS PICST_67314 126134551 4837715 complement(874438..874857) 1 NC_009043.1 go_component: mitochondrial membrane; go_function: cytochrome-c oxidase activity; go_process: electron transport; cytochrome c oxidase subunit VIa 874857 COX13 4837715 COX13 Pichia stipitis CBS 6054 cytochrome c oxidase subunit VIa XP_001383800.1 874438 R 322104 CDS PICST_30762 150864821 4837783 complement(875618..878017) 1 NC_009043.1 regulator of cell wall mannosyl phosphorylation 878017 MNN41 4837783 MNN41 Pichia stipitis CBS 6054 regulator of cell wall mannosyl phosphorylation XP_001383801.2 875618 R 322104 CDS PICST_57236 126133851 4837784 879964..880863 1 NC_009043.1 methylisocitrate lyase (2-methylisocitrate lyase) 880863 PRP2 4837784 PRP2 Pichia stipitis CBS 6054 methylisocitrate lyase (2-methylisocitrate lyase) XP_001383450.1 879964 D 322104 CDS PICST_30764 150864822 4837681 complement(<880968..882771) 1 NC_009043.1 zinc finger transcription factor; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; Suppressor of Essential Function 882771 SEF1 4837681 SEF1 Pichia stipitis CBS 6054 Suppressor of Essential Function XP_001383802.2 <880968 R 322104 CDS PICST_30765 126134557 4837785 complement(883263..885296) 1 NC_009043.1 3-isopropylmalate dehydratase large subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) (bacterial); go_function: lyase activity; hydro-lyase activity; go_process: metabolism; 3-isopropylmalate dehydratase (aconitase superfamily) 885296 LEU3 4837785 LEU3 Pichia stipitis CBS 6054 3-isopropylmalate dehydratase (aconitase superfamily) XP_001383803.1 883263 R 322104 CDS PICST_43263 126133853 4838229 885799..887244 1 NC_009043.1 hypothetical protein 887244 YXE1 4838229 YXE1 Pichia stipitis CBS 6054 hypothetical protein XP_001383451.1 885799 D 322104 CDS PICST_43145 126133855 4837831 887916..888989 1 NC_009043.1 Removes amide group from N-terminal asparagine and glutamine, to generate aspartate and glutamate; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: nitrogen compound metabolism; Carbon-nitrogen hydrolase 888989 NTA1 4837831 NTA1 Pichia stipitis CBS 6054 Carbon-nitrogen hydrolase XP_001383452.1 887916 D 322104 CDS PICST_57505 150864823 4837703 complement(889075..891081) 1 NC_009043.1 go_component: membrane; go_function: transporter activity; go_process: transport; urea transport protein 891081 DUR5.3 4837703 DUR5.3 Pichia stipitis CBS 6054 urea transport protein XP_001383804.2 889075 R 322104 CDS PICST_57784 150864576 4838230 join(893263..893710,893726..895656) 1 NC_009043.1 involved in mannose metabolism and cell wall synthesis; regulator of cell wall mannosyl phosphorylation 895656 MNN4.3 4838230 MNN4.3 Pichia stipitis CBS 6054 regulator of cell wall mannosyl phosphorylation XP_001383453.2 893263 D 322104 CDS PICST_30770 150864577 4837706 899252..901531 1 NC_009043.1 Fungal specific transcription factor; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal transcriptional regulatory protein 901531 FST7 4837706 FST7 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001383454.2 899252 D 322104 CDS PICST_30771 150864578 4837705 901797..903596 1 NC_009043.1 multidrug-resistance transporter; multidrug-resistance transporte 903596 MDR7 4837705 MDR7 Pichia stipitis CBS 6054 multidrug-resistance transporte XP_001383455.2 901797 D 322104 CDS PICST_30772 150864579 4837697 join(904147..904230,904334..904594) 1 NC_009043.1 predicted protein 904594 4837697 PICST_30772 Pichia stipitis CBS 6054 predicted protein XP_001383456.2 904147 D 322104 CDS PICST_43636 150864824 4837842 complement(904748..906706) 1 NC_009043.1 predicted protein 906706 4837842 PICST_43636 Pichia stipitis CBS 6054 predicted protein XP_001383805.2 904748 R 322104 CDS PICST_77059 126133865 4838231 join(907352..907358,907812..908374) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; RNA binding; go_process: protein biosynthesis; predicted protein 908374 4838231 PICST_77059 Pichia stipitis CBS 6054 predicted protein XP_001383457.1 907352 D 322104 CDS PICST_67316 126133867 4837931 join(908870..908880,909352..909823) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 909823 4837931 PICST_67316 Pichia stipitis CBS 6054 predicted protein XP_001383458.1 908870 D 322104 CDS PICST_88284 150864580 4838265 910171..912276 1 NC_009043.1 predicted protein 912276 4838265 PICST_88284 Pichia stipitis CBS 6054 predicted protein XP_001383459.2 910171 D 322104 CDS PICST_56684 150864581 4838212 913889..916195 1 NC_009043.1 go_function: hydrolase activity; predicted protein 916195 4838212 PICST_56684 Pichia stipitis CBS 6054 predicted protein XP_001383460.2 913889 D 322104 CDS PICST_67318 150864582 4838264 916941..919397 1 NC_009043.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 919397 4838264 PICST_67318 Pichia stipitis CBS 6054 predicted protein XP_001383461.2 916941 D 322104 CDS PICST_76693 150864583 4837974 join(920935..921522,921550..923661) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Ca2+/calmodulin-dependent protein kinase 923661 KKR1 4837974 KKR1 Pichia stipitis CBS 6054 Ca2+/calmodulin-dependent protein kinase XP_001383462.2 920935 D 322104 CDS PICST_77083 150864584 4838015 925674..926129 1 NC_009043.1 go_function: N-acetyltransferase activity; glucosamine-phosphate N-acetyltransferase 926129 GNA1 4838015 GNA1 Pichia stipitis CBS 6054 glucosamine-phosphate N-acetyltransferase XP_001383463.2 925674 D 322104 CDS PICST_30782 150864585 4837701 join(926971..928344,928394..928396) 1 NC_009043.1 predicted protein 928396 4837701 PICST_30782 Pichia stipitis CBS 6054 predicted protein XP_001383464.2 926971 D 322104 CDS PICST_82784 150864825 4837892 complement(join(928508..929215,929234..929304,929356..930424)) 1 NC_009043.1 predicted protein 930424 4837892 PICST_82784 Pichia stipitis CBS 6054 predicted protein XP_001383806.2 928508 R 322104 CDS PICST_35546 150864826 4837832 complement(931763..934309) 1 NC_009043.1 Glycosyl hydrolase, family 47 alpha mannosidase; go_component: membrane; go_function: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; calcium ion binding; go_process: N-linked glycosylation; alpha-mannosidase 934309 MLN1 4837832 MLN1 Pichia stipitis CBS 6054 alpha-mannosidase XP_001383807.2 931763 R 322104 CDS PICST_30785 150864827 4837833 complement(934607..937606) 1 NC_009043.1 predicted protein 937606 4837833 PICST_30785 Pichia stipitis CBS 6054 predicted protein XP_001383808.2 934607 R 322104 CDS PICST_30786 150864828 4837834 complement(938275..939636) 1 NC_009043.1 hypothetical protein 939636 4837834 PICST_30786 Pichia stipitis CBS 6054 hypothetical protein XP_001383809.2 938275 R 322104 CDS PICST_65437 150864829 4837835 complement(join(940220..942013,942109..942121,942213..942514)) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; protein serine/threonine kinase activity; go_process: protein amino acid phosphorylation; predicted protein 942514 4837835 PICST_65437 Pichia stipitis CBS 6054 predicted protein XP_001383810.2 940220 R 322104 CDS PICST_43496 126133881 4838129 944628..945428 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 945428 4838129 PICST_43496 Pichia stipitis CBS 6054 predicted protein XP_001383465.1 944628 D 322104 CDS PICST_43155 126133883 4838027 <946753..947040 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 947040 4838027 PICST_43155 Pichia stipitis CBS 6054 predicted protein XP_001383466.1 <946753 D 322104 CDS PICST_30790 150864586 4838201 947433..948053 1 NC_009043.1 predicted protein 948053 4838201 PICST_30790 Pichia stipitis CBS 6054 predicted protein XP_001383467.2 947433 D 322104 CDS PICST_19764 150864830 4838094 complement(<949483..>950148) 1 NC_009043.1 predicted protein >950148 4838094 PICST_19764 Pichia stipitis CBS 6054 predicted protein XP_001383811.2 <949483 R 322104 CDS PICST_30792 150864831 4838130 complement(950797..952281) 1 NC_009043.1 predicted protein 952281 4838130 PICST_30792 Pichia stipitis CBS 6054 predicted protein XP_001383812.2 950797 R 322104 CDS PICST_67325 126134577 4838131 complement(952640..954637) 1 NC_009043.1 predicted protein 954637 4838131 PICST_67325 Pichia stipitis CBS 6054 predicted protein XP_001383813.1 952640 R 322104 CDS PICST_57599 126133887 4838132 955883..956533 1 NC_009043.1 predicted protein 956533 4838132 PICST_57599 Pichia stipitis CBS 6054 predicted protein XP_001383468.1 955883 D 322104 CDS PICST_30795 150864832 4837883 complement(956715..958079) 1 NC_009043.1 Homoserine O-acetyltransferase (Homoserine O-trans-acetylase) (Homoserine transacetylase) (HTA); homoserine O-acetyltransferase 958079 MET23 4837883 MET23 Pichia stipitis CBS 6054 homoserine O-acetyltransferase XP_001383814.2 956715 R 322104 CDS PICST_30796 150864587 4838133 958579..959352 1 NC_009043.1 predicted protein 959352 4838133 PICST_30796 Pichia stipitis CBS 6054 predicted protein XP_001383469.2 958579 D 322104 CDS PICST_82776 150864588 4838095 join(959974..960057,960103..963663) 1 NC_009043.1 copper-transporting P1-type ATPase (CRD1); go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; metal ion binding; catalytic activity; go_process: metal ion transport; metabolism; copper-transporting P1-type ATPase 963663 CCC2.3 4838095 CCC2.3 Pichia stipitis CBS 6054 copper-transporting P1-type ATPase XP_001383470.2 959974 D 322104 CDS PICST_56574 150864833 4838026 complement(join(963898..964491,964516..965013)) 1 NC_009043.1 go_function: catalytic activity; predicted protein 965013 4838026 PICST_56574 Pichia stipitis CBS 6054 predicted protein XP_001383815.2 963898 R 322104 CDS PICST_43400 150864589 4838134 966486..967388 1 NC_009043.1 predicted protein 967388 4838134 PICST_43400 Pichia stipitis CBS 6054 predicted protein XP_001383471.2 966486 D 322104 CDS PICST_57134 150864590 4837924 968131..969435 1 NC_009043.1 NADH:flavin oxidoreductase/12-oxophytodienoate reductase NADPH dehydrogenase (OYE32); go_function: oxidoreductase activity; go_process: electron transport; NADH:flavin oxidoreductase/12-oxophytodienoate reductase 969435 OYE3.2 4837924 OYE3.2 Pichia stipitis CBS 6054 NADH:flavin oxidoreductase/12-oxophytodienoate reductase XP_001383472.2 968131 D 322104 CDS PICST_15404 150864591 4838124 join(970630..971794,971819..>972252) 1 NC_009043.1 pyruvate decarboxylase regulator, putative; go_component: nucleus; go_function: nucleic acid binding; pyruvate decarboxylase regulator (PDC2) 971794 PDC4 4838124 PDC4 Pichia stipitis CBS 6054 pyruvate decarboxylase regulator (PDC2) XP_001383473.2 970630 D 322104 CDS PICST_30802 150864834 4838187 complement(join(973438..973686,973771..973836)) 1 NC_009043.1 predicted protein 973836 4838187 PICST_30802 Pichia stipitis CBS 6054 predicted protein XP_001383816.2 973438 R 322104 CDS PICST_35556 150864592 4838224 974106..974822 1 NC_009043.1 go_component: integral to membrane; predicted protein 974822 4838224 PICST_35556 Pichia stipitis CBS 6054 predicted protein XP_001383474.2 974106 D 322104 CDS PICST_58031 126134585 4837981 complement(975795..977345) 1 NC_009043.1 go_process: electron transport; Cytochrome P450 52A13 (Alkane hydroxylase 2) (Alkane-inducible p450alk 2) (DH-ALK2) 977345 CP52M 4837981 CP52M Pichia stipitis CBS 6054 Cytochrome P450 52A13 (Alkane hydroxylase 2) (Alkane-inducible p450alk 2) (DH-ALK2) XP_001383817.1 975795 R 322104 CDS PICST_42907 150864835 4838225 complement(<979900..981807) 1 NC_009043.1 predicted protein 981807 4838225 PICST_42907 Pichia stipitis CBS 6054 predicted protein XP_001383818.2 <979900 R 322104 CDS PICST_30806 150864836 4838226 complement(982989..985691) 1 NC_009043.1 predicted protein 985691 4838226 PICST_30806 Pichia stipitis CBS 6054 predicted protein XP_001383819.2 982989 R 322104 CDS PICST_57882 150864593 4838227 986144..987994 1 NC_009043.1 Protein required for S-phase (DNA synthesis) initiation or completion; required for S-phase initiation or completion (MCM10) 987994 DNA43 4838227 DNA43 Pichia stipitis CBS 6054 required for S-phase initiation or completion (MCM10) XP_001383475.2 986144 D 322104 CDS PICST_82608 150864837 4837700 complement(988137..990545) 1 NC_009043.1 mannosyltransferase 990545 MNN13 4837700 MNN13 Pichia stipitis CBS 6054 mannosyltransferase XP_001383820.2 988137 R 322104 CDS PICST_30809 126133903 4838228 996945..998663 1 NC_009043.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; predicted protein 998663 4838228 PICST_30809 Pichia stipitis CBS 6054 predicted protein XP_001383476.1 996945 D 322104 CDS PICST_67329 150864594 4838246 1000713..1002848 1 NC_009043.1 predicted protein 1002848 4838246 PICST_67329 Pichia stipitis CBS 6054 predicted protein XP_001383477.2 1000713 D 322104 CDS PICST_43597 150864595 4838070 1004468..1006651 1 NC_009043.1 predicted protein 1006651 4838070 PICST_43597 Pichia stipitis CBS 6054 predicted protein XP_001383478.2 1004468 D 322104 CDS PICST_43698 150864838 4838194 complement(1006758..1008614) 1 NC_009043.1 predicted protein 1008614 4838194 PICST_43698 Pichia stipitis CBS 6054 predicted protein XP_001383821.2 1006758 R 322104 CDS PICST_30813 150864839 4837786 complement(1009026..1009955) 1 NC_009043.1 go_component: cytoplasm; go_function: shikimate 5-dehydrogenase activity; go_process: aromatic amino acid family biosynthesis, shikimate pathway; predicted protein 1009955 4837786 PICST_30813 Pichia stipitis CBS 6054 predicted protein XP_001383822.2 1009026 R 322104 CDS PICST_30814 150864596 4837787 join(1010677..1012166,1012471..1012492) 1 NC_009043.1 predicted protein 1012492 4837787 PICST_30814 Pichia stipitis CBS 6054 predicted protein XP_001383479.2 1010677 D 322104 CDS PICST_30815 150864597 4838020 1012970..1014442 1 NC_009043.1 MFS family transporter multidrug-resistance type transporter (MFS1); MFS family transporter multidrug-resistance type transporter 1014442 ATR2 4838020 ATR2 Pichia stipitis CBS 6054 MFS family transporter multidrug-resistance type transporter XP_001383480.2 1012970 D 322104 CDS PICST_82428 126133913 4838030 1014752..1015672 1 NC_009043.1 go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: nitrogen compound metabolism; predicted protein 1015672 4838030 PICST_82428 Pichia stipitis CBS 6054 predicted protein XP_001383481.1 1014752 D 322104 CDS PICST_57391 150864840 4837880 complement(1015714..>1016634) 1 NC_009043.1 predicted protein >1016634 4837880 PICST_57391 Pichia stipitis CBS 6054 predicted protein XP_001383823.2 1015714 R 322104 CDS PICST_88249 126133915 4837788 join(1017405..1017418,1017491..1018409) 1 NC_009043.1 Aldo/keto reductase 1018409 GCY3 4837788 GCY3 Pichia stipitis CBS 6054 Aldo/keto reductase XP_001383482.1 1017405 D 322104 CDS PICST_67332 150864598 4837885 1022075..1023148 1 NC_009043.1 Alternative oxidase, mitochondrial precursor (SHAM-sensitive terminal oxidase) (AOX1); go_component: mitochondrial membrane; go_process: respiratory gaseous exchange; Alternative oxidase, mitochondrial precursor (SHAM-sensitive terminal oxidase) (STO1) 1023148 AOX1 4837885 AOX1 Pichia stipitis CBS 6054 Alternative oxidase, mitochondrial precursor (SHAM-sensitive terminal oxidase) (STO1) XP_001383483.2 1022075 D 322104 CDS PICST_16323 150864599 4838236 join(1024255..1024525,1024607..>1026132) 1 NC_009043.1 similar to heat shock transcription factor possible implication in 5' binding to FAS2 site AGAAN (HSTF); go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; Heat shock transcription factor 1024525 CTA8 4838236 CTA8 Pichia stipitis CBS 6054 Heat shock transcription factor XP_001383484.2 1024255 D 322104 CDS PICST_56776 150864600 4837876 join(<1029688..1029720,1029934..1030166,1030197..1030789,1030808..1031811) 1 NC_009043.1 predicted protein 1031811 4837876 PICST_56776 Pichia stipitis CBS 6054 predicted protein XP_001383485.2 <1029688 D 322104 CDS PICST_43699 150864841 4838028 complement(1031850..1033709) 1 NC_009043.1 predicted protein 1033709 4838028 PICST_43699 Pichia stipitis CBS 6054 predicted protein XP_001383824.2 1031850 R 322104 CDS PICST_57462 126134601 4837789 complement(1033895..1035682) 1 NC_009043.1 Dihydroxyacetone kinase (Glycerone kinase) (DHA kinase); go_function: glycerone kinase activity; go_process: glycerol metabolism; dihydroxyacetone kinase 1035682 DAK2 4837789 DAK2 Pichia stipitis CBS 6054 dihydroxyacetone kinase XP_001383825.1 1033895 R 322104 CDS PICST_30826 150864601 4837790 1036540..1038603 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1038603 4837790 PICST_30826 Pichia stipitis CBS 6054 predicted protein XP_001383486.2 1036540 D 322104 CDS PICST_30827 150864602 4837888 1039042..1041843 1 NC_009043.1 regulates arginine-responsive genes; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; component of the ARGR regulatory complex 1041843 ARG81 4837888 ARG81 Pichia stipitis CBS 6054 component of the ARGR regulatory complex XP_001383487.2 1039042 D 322104 CDS PICST_67334 126133927 4837979 1042781..1043626 1 NC_009043.1 cell wall mannoprotein contains chitinase family signature; cell wall protein 1043626 CCW12 4837979 CCW12 Pichia stipitis CBS 6054 cell wall protein XP_001383488.1 1042781 D 322104 CDS PICST_88597 150864842 4838097 complement(join(1043991..1045989,1046026..1046095,1046144..1047626)) 1 NC_009043.1 go_component: intracellular; go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; exonuclease activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1047626 4838097 PICST_88597 Pichia stipitis CBS 6054 predicted protein XP_001383826.2 1043991 R 322104 CDS PICST_67336 150864603 4837791 1048980..1049450 1 NC_009043.1 predicted protein 1049450 4837791 PICST_67336 Pichia stipitis CBS 6054 predicted protein XP_001383489.2 1048980 D 322104 CDS PICST_30831 150864843 4837907 complement(1050268..1051086) 1 NC_009043.1 predicted protein 1051086 4837907 PICST_30831 Pichia stipitis CBS 6054 predicted protein XP_001383827.2 1050268 R 322104 CDS PICST_67337 150864844 4837792 complement(1051352..1053115) 1 NC_009043.1 ERO1; essential, FAD-dependent oxidase of protein disulfide isomerase; protein required for protein disulfide bond formation in the ER 1053115 ERO1 4837792 ERO1 Pichia stipitis CBS 6054 protein required for protein disulfide bond formation in the ER XP_001383828.2 1051352 R 322104 CDS PICST_82655 126134609 4837793 complement(join(1054194..1055588,1055661..1055846)) 1 NC_009043.1 go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family 1055846 DBP3 4837793 DBP3 Pichia stipitis CBS 6054 ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family XP_001383829.1 1054194 R 322104 CDS PICST_88354 150864604 4837868 join(1056581..1056829,1056932..1059406) 1 NC_009043.1 component of COPII coat of ER- Golgi vesicles The Sec23p-Sec24p complex is one of three cytoplamic COPII factors involved in ER to Golgi transport; go_component: COPII vesicle coat; go_function: protein binding; go_process: intracellular protein transport; SED5-binding protein 2 (SEC24-related protein 2) component of COPII coat of ER- Golgi vesicles 1059406 SEC24 4837868 SEC24 Pichia stipitis CBS 6054 SED5-binding protein 2 (SEC24-related protein 2) component of COPII coat of ER- Golgi vesicles XP_001383490.2 1056581 D 322104 CDS PICST_30836 150864845 4838034 complement(join(1061207..1061933,1061992..1062005)) 1 NC_009043.1 predicted protein 1062005 4838034 PICST_30836 Pichia stipitis CBS 6054 predicted protein XP_001383830.2 1061207 R 322104 CDS PICST_88742 150864846 4837869 complement(join(1066818..1067477,1067712..1067880,1068115..1068755)) 1 NC_009043.1 tyrosine-protein phosphatase (PTPX); go_function: protein tyrosine/serine/threonine phosphatase activity; go_process: protein amino acid dephosphorylation; tyrosine-protein phosphatase 1068755 CPP1 4837869 CPP1 Pichia stipitis CBS 6054 tyrosine-protein phosphatase XP_001383831.2 1066818 R 322104 CDS PICST_35572 150864847 4837870 complement(join(1070233..1070532,1070620..1073321,1073412..1073619)) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1073619 4837870 PICST_35572 Pichia stipitis CBS 6054 predicted protein XP_001383832.2 1070233 R 322104 CDS PICST_30840 150864605 4837767 1076135..1077595 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; GATA type transcriptional activator of nitrogen-regulated genes 1077595 SFU1 4837767 SFU1 Pichia stipitis CBS 6054 GATA type transcriptional activator of nitrogen-regulated genes XP_001383491.2 1076135 D 322104 CDS PICST_44274 126133935 4838324 1078020..1078940 1 NC_009043.1 Mitochondrial carnitine-acylcarnitine carrier protein; go_component: membrane; go_function: binding; go_process: transport; mitochondrial carrier protein 1078940 YMC1 4838324 YMC1 Pichia stipitis CBS 6054 mitochondrial carrier protein XP_001383492.1 1078020 D 322104 CDS PICST_88630 126133937 4838080 1079513..1080193 1 NC_009043.1 go_function: electron transporter activity; iron ion binding; go_process: electron transport; mitochondrial complex I NUIM TYKY subunit (proton translocation) 1080193 NUO1 4838080 NUO1 Pichia stipitis CBS 6054 mitochondrial complex I NUIM TYKY subunit (proton translocation) XP_001383493.1 1079513 D 322104 CDS PICST_77110 126134617 4837684 complement(1081013..1081465) 1 NC_009043.1 go_function: cytochrome-c oxidase activity; go_process: electron transport; cytochrome-c oxidase subunit Va 1081465 COX5a 4837684 COX5a Pichia stipitis CBS 6054 cytochrome-c oxidase subunit Va XP_001383833.1 1081013 R 322104 CDS PICST_43721 126134619 4837768 complement(1082806..1083903) 1 NC_009043.1 predicted protein 1083903 4837768 PICST_43721 Pichia stipitis CBS 6054 predicted protein XP_001383834.1 1082806 R 322104 CDS PICST_56703 150864848 4837769 complement(join(1084117..1086908,1086936..1086999)) 1 NC_009043.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; Glucoamylase 1 precursor (Glucan 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) 1086999 CGA1 4837769 CGA1 Pichia stipitis CBS 6054 Glucoamylase 1 precursor (Glucan 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) XP_001383835.2 1084117 R 322104 CDS PICST_67344 150864606 4837770 1088753..1090882 1 NC_009043.1 similar to Muscle M-line assembly protein unc-89 (Uncoordinated protein 89); Muscle M-line assembly protein unc-89 (Uncoordinated protein 89) 1090882 UNC89.1 4837770 UNC89.1 Pichia stipitis CBS 6054 Muscle M-line assembly protein unc-89 (Uncoordinated protein 89) XP_001383494.2 1088753 D 322104 CDS PICST_30847 126133941 4838267 1091411..1092019 1 NC_009043.1 go_function: protein binding; go_process: apoptosis; predicted protein 1092019 4838267 PICST_30847 Pichia stipitis CBS 6054 predicted protein XP_001383495.1 1091411 D 322104 CDS PICST_30848 126134623 4837754 complement(1092205..1092741) 1 NC_009043.1 predicted protein 1092741 4837754 PICST_30848 Pichia stipitis CBS 6054 predicted protein XP_001383836.1 1092205 R 322104 CDS PICST_76777 150864849 4837771 complement(1092986..1094866) 1 NC_009043.1 go_function: membrane alanyl aminopeptidase activity; go_process: proteolysis and peptidolysis; leukotriene A-4 hydrolase (LTA-4 hydrolase) (Leukotriene A(4) hydrolase) 1094866 LKA4 4837771 LKA4 Pichia stipitis CBS 6054 leukotriene A-4 hydrolase (LTA-4 hydrolase) (Leukotriene A(4) hydrolase) XP_001383837.2 1092986 R 322104 CDS PICST_57157 150864850 4837985 complement(join(<1095325..1095597,1095775..1096289,1096365..1096818)) 1 NC_009043.1 predicted protein 1096818 4837985 PICST_57157 Pichia stipitis CBS 6054 predicted protein XP_001383838.2 <1095325 R 322104 CDS PICST_71226 126134629 4837986 complement(1097419..1098450) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1098450 4837986 PICST_71226 Pichia stipitis CBS 6054 predicted protein XP_001383839.1 1097419 R 322104 CDS PICST_57033 150864851 4837987 complement(join(<1098866..1099906,1099940..>1100035)) 1 NC_009043.1 predicted protein 1099906 4837987 PICST_57033 Pichia stipitis CBS 6054 predicted protein XP_001383840.2 <1098866 R 322104 CDS PICST_71203 126134633 4838059 complement(1101299..1102420) 1 NC_009043.1 threonine aldolase 1102420 GLY2 4838059 GLY2 Pichia stipitis CBS 6054 threonine aldolase XP_001383841.1 1101299 R 322104 CDS PICST_82766 150864852 4838060 complement(join(1103550..1104025,1104065..1104102,1104256..1105857,1105894..1106279)) 1 NC_009043.1 hypothetical protein 1106279 4838060 PICST_82766 Pichia stipitis CBS 6054 hypothetical protein XP_001383842.2 1103550 R 322104 CDS PICST_57608 150864853 4838061 complement(join(<1106637..1107324,1107343..1107464,1107495..1108106)) 1 NC_009043.1 predicted protein 1108106 4838061 PICST_57608 Pichia stipitis CBS 6054 predicted protein XP_001383843.2 <1106637 R 322104 CDS PICST_43743 126133943 4838062 join(1109338..1109694,1109764..1111185) 1 NC_009043.1 membrane transporter of the MFS-MDR family (DHA12) (TPO3); go_component: integral to membrane; go_function: transporter activity; go_process: transport; multidrug resistance protein 3 1111185 MDR13 4838062 MDR13 Pichia stipitis CBS 6054 multidrug resistance protein 3 XP_001383496.1 1109338 D 322104 CDS PICST_43722 126134639 4838241 complement(1111300..1112805) 1 NC_009043.1 go_process: metabolism; vacuolar alkaline phosphatase 1112805 PHO82 4838241 PHO82 Pichia stipitis CBS 6054 vacuolar alkaline phosphatase XP_001383844.1 1111300 R 322104 CDS PICST_82654 126134641 4838063 complement(1116334..1118016) 1 NC_009043.1 go_process: metabolism; vacuolar alkaline phosphatase 1118016 PHO8 4838063 PHO8 Pichia stipitis CBS 6054 vacuolar alkaline phosphatase XP_001383845.1 1116334 R 322104 CDS PICST_44059 150864854 4838105 complement(1118730..1119797) 1 NC_009043.1 predicted protein 1119797 4838105 PICST_44059 Pichia stipitis CBS 6054 predicted protein XP_001383846.2 1118730 R 322104 CDS PICST_30859 126134645 4838106 complement(1120021..1121292) 1 NC_009043.1 predicted protein 1121292 4838106 PICST_30859 Pichia stipitis CBS 6054 predicted protein XP_001383847.1 1120021 R 322104 CDS PICST_82966 150864607 4838107 join(1122582..1124358,1124395..1124492) 1 NC_009043.1 Predicted transporter ADD1 (major facilitator superfamily) 1124492 YJQ3 4838107 YJQ3 Pichia stipitis CBS 6054 Predicted transporter ADD1 (major facilitator superfamily) XP_001383497.2 1122582 D 322104 CDS PICST_57819 126133947 4838355 join(1125224..1125796,1125818..1127140) 1 NC_009043.1 glycosylphosphatidylinositol synthesis Participates in synthesis of N-acetylglucoaminylphosphatidylinositol, the first intermediate in synthesis of glycosylphosphatidylinositol (GPI) anchors; required for phosphatidylinositol biosynthesis Cell wall/membrane/envelope biogenesis; go_component: integral to membrane; go_function: phosphatidylinositol N-acetylglucosaminyltransferase activity; go_process: GPI anchor biosynthesis; glycosylphosphatidylinositol synthesis N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1 1127140 GPI1 4838355 GPI1 Pichia stipitis CBS 6054 glycosylphosphatidylinositol synthesis N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1 XP_001383498.1 1125224 D 322104 CDS PICST_76999 126133949 4837687 join(1127888..1127977,1128415..1129110) 1 NC_009043.1 40S ribosomal protein S0-A (Nucleic acid-binding protein NAB1A); go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein S0A 1129110 RPS0A 4837687 RPS0A Pichia stipitis CBS 6054 ribosomal protein S0A XP_001383499.1 1127888 D 322104 CDS PICST_58065 126133951 4838119 1131500..1132507 1 NC_009043.1 dihydroflavonol-4-reductases 1132507 GRP3.3 4838119 GRP3.3 Pichia stipitis CBS 6054 dihydroflavonol-4-reductases XP_001383500.1 1131500 D 322104 CDS PICST_43247 150864608 4838314 join(1133913..1134528,1134577..>1135196) 1 NC_009043.1 protein involved in (1,3)-beta-glucan synthesis 1134528 SMI1.1 4838314 SMI1.1 Pichia stipitis CBS 6054 protein involved in (1,3)-beta-glucan synthesis XP_001383501.2 1133913 D 322104 CDS PICST_43096 150864855 4838305 complement(1135486..1136883) 1 NC_009043.1 glucosyltransferase 1136883 DIE2 4838305 DIE2 Pichia stipitis CBS 6054 glucosyltransferase XP_001383848.2 1135486 R 322104 CDS PICST_57298 150864609 4838108 join(<1137359..1137457,1137506..1137574,1137598..1137638,1137661..1138223,1138284..1138885) 1 NC_009043.1 predicted protein 1138885 4838108 PICST_57298 Pichia stipitis CBS 6054 predicted protein XP_001383502.2 <1137359 D 322104 CDS PICST_30867 150864610 4838304 1139225..1140091 1 NC_009043.1 predicted protein 1140091 4838304 PICST_30867 Pichia stipitis CBS 6054 predicted protein XP_001383503.2 1139225 D 322104 CDS PICST_76983 126134649 4838299 complement(1140335..1141243) 1 NC_009043.1 predicted protein 1141243 4838299 PICST_76983 Pichia stipitis CBS 6054 predicted protein XP_001383849.1 1140335 R 322104 CDS PICST_56998 150864856 4838109 complement(1141649..1143364) 1 NC_009043.1 predicted protein 1143364 4838109 PICST_56998 Pichia stipitis CBS 6054 predicted protein XP_001383850.2 1141649 R 322104 CDS PICST_77156 150864611 4838110 1144409..1147441 1 NC_009043.1 Beta-hexosaminidase A precursor (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) (Chitobiase); go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; glycosyl hyrolase, family 3-like protein 1147441 BHA1 4838110 BHA1 Pichia stipitis CBS 6054 glycosyl hyrolase, family 3-like protein XP_001383504.2 1144409 D 322104 CDS PICST_30871 150864857 4838298 complement(1147798..1148307) 1 NC_009043.1 predicted protein 1148307 4838298 PICST_30871 Pichia stipitis CBS 6054 predicted protein XP_001383851.2 1147798 R 322104 CDS PICST_71471 126133961 4837950 1151263..1152924 1 NC_009043.1 go_process: gluconeogenesis; phosphoenolpyruvate carboxykinase 1152924 PCK1 4837950 PCK1 Pichia stipitis CBS 6054 phosphoenolpyruvate carboxykinase XP_001383505.1 1151263 D 322104 CDS PICST_35590 150864612 4838296 1154778..1156349 1 NC_009043.1 go_process: electron transport; n-alkane inducible cytochrome P- 450 1156349 ALK2 4838296 ALK2 Pichia stipitis CBS 6054 n-alkane inducible cytochrome P- 450 XP_001383506.2 1154778 D 322104 CDS PICST_30874 150864613 4838294 1157487..1163015 1 NC_009043.1 predicted protein 1163015 4838294 PICST_30874 Pichia stipitis CBS 6054 predicted protein XP_001383507.2 1157487 D 322104 CDS PICST_30875 126133967 4838249 join(1164585..1164647,1165221..1165460) 1 NC_009043.1 ATP synthase f chain, mitochondrial precursor 1165460 ATP17 4838249 ATP17 Pichia stipitis CBS 6054 ATP synthase f chain, mitochondrial precursor XP_001383508.1 1164585 D 322104 CDS PICST_65458 150864614 4838247 join(1167081..1167322,1167455..1169162,1169280..1169440,1169527..1169665,1169742..1170349,1170464..1171130) 1 NC_009043.1 [Hydroxymethylglutaryl-CoA reductase(NADPH)] kinase upregulated 3 to 5 fold on GOL; go_function: protein kinase activity; ATP binding; protein serine/threonine kinase activity; go_process: protein amino acid phosphorylation; [Hydroxymethylglutaryl-CoA reductase(NADPH)] kinase KIN2 1171130 KIN2 4838247 KIN2 Pichia stipitis CBS 6054 [Hydroxymethylglutaryl-CoA reductase(NADPH)] kinase KIN2 XP_001383509.2 1167081 D 322104 CDS PICST_30877 150864858 4838244 complement(1171442..1171792) 1 NC_009043.1 predicted protein 1171792 4838244 PICST_30877 Pichia stipitis CBS 6054 predicted protein XP_001383852.2 1171442 R 322104 CDS PICST_30878 150864859 4837951 complement(1172528..1174105) 1 NC_009043.1 predicted protein 1174105 4837951 PICST_30878 Pichia stipitis CBS 6054 predicted protein XP_001383853.2 1172528 R 322104 CDS PICST_30880 150864615 4837952 1180156..1181454 1 NC_009043.1 Regulator of Ty1 Transposition 1181454 RTT109 4837952 RTT109 Pichia stipitis CBS 6054 Regulator of Ty1 Transposition XP_001383510.2 1180156 D 322104 CDS PICST_67359 150864616 4838243 1183835..1184746 1 NC_009043.1 predicted protein 1184746 4838243 PICST_67359 Pichia stipitis CBS 6054 predicted protein XP_001383511.2 1183835 D 322104 CDS PICST_43807 126133975 4838242 <1185807..1186616 1 NC_009043.1 chitin deacetylase Required for proper formation of the ascospore wall; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: carbohydrate metabolism; Chitin deacetylase 2 precursor 1186616 CDA2 4838242 CDA2 Pichia stipitis CBS 6054 Chitin deacetylase 2 precursor XP_001383512.1 <1185807 D 322104 CDS PICST_30883 126134659 4838237 complement(1187349..1188119) 1 NC_009043.1 predicted protein 1188119 4838237 PICST_30883 Pichia stipitis CBS 6054 predicted protein XP_001383854.1 1187349 R 322104 CDS PICST_35594 150864860 4837953 complement(1190610..1191866) 1 NC_009043.1 go_component: nucleus; go_function: DNA binding; go_process: nucleosome assembly; predicted protein 1191866 4837953 PICST_35594 Pichia stipitis CBS 6054 predicted protein XP_001383855.2 1190610 R 322104 CDS PICST_30885 150864861 4838232 complement(join(1192495..1192507,1192549..1194956)) 1 NC_009043.1 go_component: membrane; go_function: ATP binding; go_process: transport; predicted protein 1194956 4838232 PICST_30885 Pichia stipitis CBS 6054 predicted protein XP_001383856.2 1192495 R 322104 CDS PICST_65459 150864617 4838233 join(1197712..1198571,1198750..1198877,1198973..1199841) 1 NC_009043.1 predicted protein 1199841 4838233 PICST_65459 Pichia stipitis CBS 6054 predicted protein XP_001383513.2 1197712 D 322104 CDS PICST_30887 150864618 4838198 1200256..1201347 1 NC_009043.1 predicted protein 1201347 4838198 PICST_30887 Pichia stipitis CBS 6054 predicted protein XP_001383514.2 1200256 D 322104 CDS PICST_65460 150864862 4838196 complement(1201630..1202499) 1 NC_009043.1 predicted protein 1202499 4838196 PICST_65460 Pichia stipitis CBS 6054 predicted protein XP_001383857.2 1201630 R 322104 CDS PICST_43272 150864863 4838234 complement(1202902..1204524) 1 NC_009043.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; predicted protein 1204524 4838234 PICST_43272 Pichia stipitis CBS 6054 predicted protein XP_001383858.2 1202902 R 322104 CDS PICST_88266 150864864 4838235 complement(1205559..1206227) 1 NC_009043.1 predicted protein 1206227 4838235 PICST_88266 Pichia stipitis CBS 6054 predicted protein XP_001383859.2 1205559 R 322104 CDS PICST_82807 150864865 4838112 complement(join(1206626..1207089,1207108..1208551)) 1 NC_009043.1 Lysophospholipase (Phospholipase B); go_function: phospholipase activity; go_process: phospholipid catabolism; phospholipase B 1208551 PLB1 4838112 PLB1 Pichia stipitis CBS 6054 phospholipase B XP_001383860.2 1206626 R 322104 CDS PICST_88634 150864619 4838113 1210717..1211799 1 NC_009043.1 predicted protein 1211799 4838113 PICST_88634 Pichia stipitis CBS 6054 predicted protein XP_001383515.2 1210717 D 322104 CDS PICST_30893 150864620 4838195 1212346..1213164 1 NC_009043.1 predicted protein 1213164 4838195 PICST_30893 Pichia stipitis CBS 6054 predicted protein XP_001383516.2 1212346 D 322104 CDS PICST_88417 150864866 4838192 complement(1213376..1214656) 1 NC_009043.1 predicted protein 1214656 4838192 PICST_88417 Pichia stipitis CBS 6054 predicted protein XP_001383861.2 1213376 R 322104 CDS PICST_57234 150864621 4838114 1215173..1216363 1 NC_009043.1 ATP-dependent RNA helicase Required for maturation of the 35S primary transcript of pre-rRNA and is required for cleavages leading to mature 18S RNA; go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent rRNA helicase RRP3 1216363 RRP3 4838114 RRP3 Pichia stipitis CBS 6054 ATP-dependent rRNA helicase RRP3 XP_001383517.2 1215173 D 322104 CDS PICST_19381 150864867 4838190 complement(join(<1216635..1217293,1217324..>1217801)) 1 NC_009043.1 go_function: zinc ion binding; predicted protein 1217293 4838190 PICST_19381 Pichia stipitis CBS 6054 predicted protein XP_001383862.2 <1216635 R 322104 CDS PICST_30897 126133987 4838115 join(1221391..1221547,1221605..1221942) 1 NC_009043.1 predicted protein 1221942 4838115 PICST_30897 Pichia stipitis CBS 6054 predicted protein XP_001383518.1 1221391 D 322104 CDS PICST_57202 150864868 4838188 complement(1222154..1224373) 1 NC_009043.1 go_component: membrane; go_function: mannosyltransferase activity; go_process: O-linked glycosylation; predicted protein 1224373 4838188 PICST_57202 Pichia stipitis CBS 6054 predicted protein XP_001383863.2 1222154 R 322104 CDS PICST_30899 126134679 4838255 complement(1225168..1226484) 1 NC_009043.1 predicted protein 1226484 4838255 PICST_30899 Pichia stipitis CBS 6054 predicted protein XP_001383864.1 1225168 R 322104 CDS PICST_30900 150864869 4838256 complement(1227283..1228632) 1 NC_009043.1 predicted protein 1228632 4838256 PICST_30900 Pichia stipitis CBS 6054 predicted protein XP_001383865.2 1227283 R 322104 CDS PICST_30901 150864870 4838257 complement(1229230..1230531) 1 NC_009043.1 predicted protein 1230531 4838257 PICST_30901 Pichia stipitis CBS 6054 predicted protein XP_001383866.2 1229230 R 322104 CDS PICST_43654 150864622 4838258 1231849..1232526 1 NC_009043.1 cysteine dioxygenase 1232526 CDG1 4838258 CDG1 Pichia stipitis CBS 6054 cysteine dioxygenase XP_001383519.2 1231849 D 322104 CDS PICST_43511 126134685 4838185 complement(1232787..1233692) 1 NC_009043.1 predicted protein 1233692 4838185 PICST_43511 Pichia stipitis CBS 6054 predicted protein XP_001383867.1 1232787 R 322104 CDS PICST_30904 150864871 4838259 complement(1234129..1235730) 1 NC_009043.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; predicted protein 1235730 4838259 PICST_30904 Pichia stipitis CBS 6054 predicted protein XP_001383868.2 1234129 R 322104 CDS PICST_43079 126133991 4838351 1235998..1236693 1 NC_009043.1 predicted protein 1236693 4838351 PICST_43079 Pichia stipitis CBS 6054 predicted protein XP_001383520.1 1235998 D 322104 CDS PICST_30906 126133993 4838122 1237336..1238355 1 NC_009043.1 predicted protein 1238355 4838122 PICST_30906 Pichia stipitis CBS 6054 predicted protein XP_001383521.1 1237336 D 322104 CDS PICST_57701 150864872 4838144 complement(join(1238658..1239419,1239435..1239566)) 1 NC_009043.1 go_process: electron transport; Putative cytochrome C oxidase assembly protein 1239566 SCO1 4838144 SCO1 Pichia stipitis CBS 6054 Putative cytochrome C oxidase assembly protein XP_001383869.2 1238658 R 322104 CDS PICST_57570 150864623 4838352 1240132..1241967 1 NC_009043.1 predicted protein 1241967 4838352 PICST_57570 Pichia stipitis CBS 6054 predicted protein XP_001383522.2 1240132 D 322104 CDS PICST_71307 126134691 4838143 complement(1242355..1242933) 1 NC_009043.1 predicted protein 1242933 4838143 PICST_71307 Pichia stipitis CBS 6054 predicted protein XP_001383870.1 1242355 R 322104 CDS PICST_77171 150864873 4838353 complement(1243783..1246506) 1 NC_009043.1 go_function: nucleic acid binding; nuclease activity; predicted protein 1246506 4838353 PICST_77171 Pichia stipitis CBS 6054 predicted protein XP_001383871.2 1243783 R 322104 CDS PICST_30911 150864624 4838354 1249143..1249646 1 NC_009043.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 1249646 4838354 PICST_30911 Pichia stipitis CBS 6054 predicted protein XP_001383523.2 1249143 D 322104 CDS PICST_57813 150864625 4838140 1250192..1251676 1 NC_009043.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 1251676 4838140 PICST_57813 Pichia stipitis CBS 6054 predicted protein XP_001383524.2 1250192 D 322104 CDS PICST_44259 150864626 4838139 1252173..1252613 1 NC_009043.1 predicted protein 1252613 4838139 PICST_44259 Pichia stipitis CBS 6054 predicted protein XP_001383525.2 1252173 D 322104 CDS PICST_67368 150864627 4838137 1252934..1254850 1 NC_009043.1 predicted protein 1254850 4838137 PICST_67368 Pichia stipitis CBS 6054 predicted protein XP_001383526.2 1252934 D 322104 CDS PICST_88728 150864628 4837938 join(1267661..1267749,1267921..1271257) 1 NC_009043.1 go_component: membrane; go_function: ATP binding; go_process: transport; predicted protein 1271257 4837938 PICST_88728 Pichia stipitis CBS 6054 predicted protein XP_001383527.2 1267661 D 322104 CDS PICST_82713 126134007 4838092 1271868..1272620 1 NC_009043.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1272620 4838092 PICST_82713 Pichia stipitis CBS 6054 predicted protein XP_001383528.1 1271868 D 322104 CDS PICST_1171 150864629 4838103 <1272892..>1275552 1 NC_009043.1 predicted protein >1275552 4838103 PICST_1171 Pichia stipitis CBS 6054 predicted protein XP_001383529.2 <1272892 D 322104 CDS PICST_88335 126134695 4838102 complement(1275671..1277341) 1 NC_009043.1 go_component: membrane; go_function: D-arabinono-1,4-lactone oxidase activity; go_process: electron transport; D-arabinono-1,4-lactone oxidase (ALO) (L-galactono-gamma-lactone oxidase) 1277341 ALO1 4838102 ALO1 Pichia stipitis CBS 6054 D-arabinono-1,4-lactone oxidase (ALO) (L-galactono-gamma-lactone oxidase) XP_001383872.1 1275671 R 322104 CDS PICST_30920 150864874 4838334 complement(1278087..1279775) 1 NC_009043.1 predicted protein 1279775 4838334 PICST_30920 Pichia stipitis CBS 6054 predicted protein XP_001383873.2 1278087 R 322104 CDS PICST_83020 126134011 4838335 1281634..1282977 1 NC_009043.1 go_function: hydroxymethylglutaryl-CoA synthase activity; go_process: acetyl-CoA metabolism; predicted protein 1282977 4838335 PICST_83020 Pichia stipitis CBS 6054 predicted protein XP_001383530.1 1281634 D 322104 CDS PICST_82718 150864630 4838101 1283658..1287884 1 NC_009043.1 go_function: RNA binding; RNA methyltransferase activity; go_process: RNA processing; predicted protein 1287884 4838101 PICST_82718 Pichia stipitis CBS 6054 predicted protein XP_001383531.2 1283658 D 322104 CDS PICST_43184 150864875 4838098 complement(1288018..1288884) 1 NC_009043.1 go_function: 3'-5'-exoribonuclease activity; RNA binding; go_process: RNA processing; predicted protein 1288884 4838098 PICST_43184 Pichia stipitis CBS 6054 predicted protein XP_001383874.2 1288018 R 322104 CDS PICST_56883 150864631 4838336 join(1289469..1290054,1290076..1290716) 1 NC_009043.1 predicted protein 1290716 4838336 PICST_56883 Pichia stipitis CBS 6054 predicted protein XP_001383532.2 1289469 D 322104 CDS PICST_30925 150864876 4838099 complement(1290920..1292608) 1 NC_009043.1 predicted protein 1292608 4838099 PICST_30925 Pichia stipitis CBS 6054 predicted protein XP_001383875.2 1290920 R 322104 CDS PICST_30926 150864632 4837776 1293135..1294373 1 NC_009043.1 predicted protein 1294373 4837776 PICST_30926 Pichia stipitis CBS 6054 predicted protein XP_001383533.2 1293135 D 322104 CDS PICST_82404 150864877 4838096 complement(join(1294482..1295704,1295768..1295885)) 1 NC_009043.1 Protein farnesyltransferase beta subunit (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta); go_function: catalytic activity; protein farnesyltransferase, beta subunit 1295885 RAM1 4838096 RAM1 Pichia stipitis CBS 6054 protein farnesyltransferase, beta subunit XP_001383876.2 1294482 R 322104 CDS PICST_43666 150864633 4837777 1297177..1298538 1 NC_009043.1 predicted protein 1298538 4837777 PICST_43666 Pichia stipitis CBS 6054 predicted protein XP_001383534.2 1297177 D 322104 CDS PICST_30929 150864878 4837904 complement(1298719..1299117) 1 NC_009043.1 predicted protein 1299117 4837904 PICST_30929 Pichia stipitis CBS 6054 predicted protein XP_001383877.2 1298719 R 322104 CDS PICST_82921 150864634 4837778 join(1300358..1301258,1301376..1302121) 1 NC_009043.1 Monocarboxylate transporter 1302121 MCH3 4837778 MCH3 Pichia stipitis CBS 6054 Monocarboxylate transporter XP_001383535.2 1300358 D 322104 CDS PICST_56797 150864879 4838071 complement(1302218..>1304830) 1 NC_009043.1 predicted protein >1304830 4838071 PICST_56797 Pichia stipitis CBS 6054 predicted protein XP_001383878.2 1302218 R 322104 CDS PICST_43701 150864635 4837779 1305575..1306219 1 NC_009043.1 go_process: allantoin catabolism; ureidoglycolate hydrolase 1306219 DAL3 4837779 DAL3 Pichia stipitis CBS 6054 ureidoglycolate hydrolase XP_001383536.2 1305575 D 322104 CDS PICST_30933 126134709 4837704 complement(<1306397..1306969) 1 NC_009043.1 predicted protein 1306969 4837704 PICST_30933 Pichia stipitis CBS 6054 predicted protein XP_001383879.1 <1306397 R 322104 CDS PICST_83009 150864636 4837780 1307523..1310084 1 NC_009043.1 go_component: exocyst; go_process: vesicle docking during exocytosis; predicted protein 1310084 4837780 PICST_83009 Pichia stipitis CBS 6054 predicted protein XP_001383537.2 1307523 D 322104 CDS PICST_82827 126134027 4838240 join(1310841..1310913,1311013..1311680) 1 NC_009043.1 cytochrome-c oxidase assembly protein; Mitochondrial membrane protein required for insertion of Cu(B) and magnesium during assembly of cytochrome c oxidase; Posttranslational modification, protein turnover, chaperones; go_function: copper ion binding; Cytochrome oxidase assembly factor COX11 1311680 COX11 4838240 COX11 Pichia stipitis CBS 6054 Cytochrome oxidase assembly factor COX11 XP_001383538.1 1310841 D 322104 CDS PICST_42867 150864637 4837884 1314676..1316784 1 NC_009043.1 Ferric reductase, NADH/NADPH oxidase transmembrane component (FRE10) (FRE2) (FRE11) (FRE1); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; ferric reductase transmembrane component (6 domains)(Ferric-chelate reductase) 1316784 FRE1.4 4837884 FRE1.4 Pichia stipitis CBS 6054 ferric reductase transmembrane component (6 domains)(Ferric-chelate reductase) XP_001383539.2 1314676 D 322104 CDS PICST_56924 126134031 4837882 1317419..1318417 1 NC_009043.1 conserved hypothetical protein of the cinnamyl-alcohol dehydrogenase family; cinnamyl-alcohol dehydrogenase 1318417 CAD4 4837882 CAD4 Pichia stipitis CBS 6054 cinnamyl-alcohol dehydrogenase XP_001383540.1 1317419 D 322104 CDS PICST_67377 150864638 4837879 1319925..>1321013 1 NC_009043.1 predicted protein >1321013 4837879 PICST_67377 Pichia stipitis CBS 6054 predicted protein XP_001383541.2 1319925 D 322104 CDS PICST_30939 126134035 4837878 join(1321137..1321227,1323375..1324942) 1 NC_009043.1 go_component: membrane; go_process: transport; arginine permease 1324942 CAN1 4837878 CAN1 Pichia stipitis CBS 6054 arginine permease XP_001383542.1 1321137 D 322104 CDS PICST_82993 126134037 4837875 1325747..1326001 1 NC_009043.1 predicted protein 1326001 4837875 PICST_82993 Pichia stipitis CBS 6054 predicted protein XP_001383543.1 1325747 D 322104 CDS PICST_30941 150864639 4837874 1326579..1327556 1 NC_009043.1 predicted protein 1327556 4837874 PICST_30941 Pichia stipitis CBS 6054 predicted protein XP_001383544.2 1326579 D 322104 CDS PICST_57141 150864880 4837873 complement(1327779..1328897) 1 NC_009043.1 go_function: O-sialoglycoprotein endopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1328897 4837873 PICST_57141 Pichia stipitis CBS 6054 predicted protein XP_001383880.2 1327779 R 322104 CDS PICST_30943 150864640 4838148 1329517..1330371 1 NC_009043.1 predicted protein 1330371 4838148 PICST_30943 Pichia stipitis CBS 6054 predicted protein XP_001383545.2 1329517 D 322104 CDS PICST_30944 126134713 4837872 complement(join(1330665..1330982,1331144..1331146)) 1 NC_009043.1 go_component: ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1331146 4837872 PICST_30944 Pichia stipitis CBS 6054 predicted protein XP_001383881.1 1330665 R 322104 CDS PICST_88185 126134043 4838149 1332098..1332565 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1332565 4838149 PICST_88185 Pichia stipitis CBS 6054 predicted protein XP_001383546.1 1332098 D 322104 CDS PICST_30946 150864881 4837819 complement(join(1332884..1332940,1332999..1333934)) 1 NC_009043.1 Asparaginase 1333934 ASG1 4837819 ASG1 Pichia stipitis CBS 6054 Asparaginase XP_001383882.2 1332884 R 322104 CDS PICST_82570 150864882 4838150 complement(join(1335033..1336427,1336503..1336795,1336826..1337264)) 1 NC_009043.1 go_function: protein tyrosine/serine/threonine phosphatase activity; go_process: protein amino acid dephosphorylation; predicted protein 1337264 4838150 PICST_82570 Pichia stipitis CBS 6054 predicted protein XP_001383883.2 1335033 R 322104 CDS PICST_30948 150864641 4838341 1339453..1340898 1 NC_009043.1 predicted protein 1340898 4838341 PICST_30948 Pichia stipitis CBS 6054 predicted protein XP_001383547.2 1339453 D 322104 CDS PICST_56965 150864642 4837820 1341086..1344124 1 NC_009043.1 predicted protein 1344124 4837820 PICST_56965 Pichia stipitis CBS 6054 predicted protein XP_001383548.2 1341086 D 322104 CDS PICST_44010 126134049 4837799 join(1345164..1345335,1345717..1346378) 1 NC_009043.1 go_component: endoplasmic reticulum; go_function: molecular function unknown; predicted protein 1346378 4837799 PICST_44010 Pichia stipitis CBS 6054 predicted protein XP_001383549.1 1345164 D 322104 CDS PICST_56862 126134719 4837797 complement(1346657..1347568) 1 NC_009043.1 tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) 1347568 TRM8 4837797 TRM8 Pichia stipitis CBS 6054 tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) XP_001383884.1 1346657 R 322104 CDS PICST_30952 150864883 4838342 complement(1347915..1348682) 1 NC_009043.1 predicted protein 1348682 4838342 PICST_30952 Pichia stipitis CBS 6054 predicted protein XP_001383885.2 1347915 R 322104 CDS PICST_30953 126134051 4838343 1349256..1350956 1 NC_009043.1 go_component: intracellular; go_function: double-stranded RNA binding; RNA binding; ribonuclease III activity; go_process: RNA processing; predicted protein 1350956 4838343 PICST_30953 Pichia stipitis CBS 6054 predicted protein XP_001383550.1 1349256 D 322104 CDS PICST_30954 150864643 4837795 1354205..1355653 1 NC_009043.1 predicted protein 1355653 4837795 PICST_30954 Pichia stipitis CBS 6054 predicted protein XP_001383551.2 1354205 D 322104 CDS PICST_30955 150864884 4837796 complement(1355754..1356839) 1 NC_009043.1 Biotin synthase 1356839 BIO2 4837796 BIO2 Pichia stipitis CBS 6054 Biotin synthase XP_001383886.2 1355754 R 322104 CDS PICST_71370 126134055 4838344 join(1357422..1357433,1357759..1358109) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1358109 4838344 PICST_71370 Pichia stipitis CBS 6054 predicted protein XP_001383552.1 1357422 D 322104 CDS PICST_56762 126134057 4837794 1358841..1359845 1 NC_009043.1 dihydroflavonol-4-reductases; protein induced by osmotic stress 1359845 GRP3.2 4837794 GRP3.2 Pichia stipitis CBS 6054 protein induced by osmotic stress XP_001383553.1 1358841 D 322104 CDS PICST_30958 150864885 4837698 complement(1361165..1363249) 1 NC_009043.1 predicted protein 1363249 4837698 PICST_30958 Pichia stipitis CBS 6054 predicted protein XP_001383887.2 1361165 R 322104 CDS PICST_88705 150864886 4838345 complement(1366310..1368343) 1 NC_009043.1 go_function: lyase activity; hydro-lyase activity; go_process: metabolism; homoaconitase 1368343 LYS4 4838345 LYS4 Pichia stipitis CBS 6054 homoaconitase XP_001383888.2 1366310 R 322104 CDS PICST_67383 150864644 4837762 1371705..1376288 1 NC_009043.1 predicted protein 1376288 4837762 PICST_67383 Pichia stipitis CBS 6054 predicted protein XP_001383554.2 1371705 D 322104 CDS PICST_42944 126134061 4837711 1377033..1378163 1 NC_009043.1 predicted protein 1378163 4837711 PICST_42944 Pichia stipitis CBS 6054 predicted protein XP_001383555.1 1377033 D 322104 CDS PICST_30962 150864887 4837969 complement(1378361..1379950) 1 NC_009043.1 predicted protein 1379950 4837969 PICST_30962 Pichia stipitis CBS 6054 predicted protein XP_001383889.2 1378361 R 322104 CDS PICST_76838 150864888 4837763 complement(1380276..1381973) 1 NC_009043.1 Anion Exchange Family protein Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family); anion exchange family protein 1381973 AEF1 4837763 AEF1 Pichia stipitis CBS 6054 anion exchange family protein XP_001383890.2 1380276 R 322104 CDS PICST_71247 126134063 4837764 join(1390885..1390921,1390982..1391769) 1 NC_009043.1 predicted protein 1391769 4837764 PICST_71247 Pichia stipitis CBS 6054 predicted protein XP_001383556.1 1390885 D 322104 CDS PICST_57620 150864645 4837968 1392019..>1393923 1 NC_009043.1 predicted protein >1393923 4837968 PICST_57620 Pichia stipitis CBS 6054 predicted protein XP_001383557.2 1392019 D 322104 CDS PICST_70997 150864889 4837967 complement(1394172..1396301) 1 NC_009043.1 phosphodiesterase; Ectonucleotide pyrophosphatase/phosphodiesterase 3; go_function: hydrolase activity; go_process: nucleotide metabolism; phosphodiesterase; putative nucleotide pyrophosphatase precursor 1396301 ENP3 4837967 ENP3 Pichia stipitis CBS 6054 phosphodiesterase; putative nucleotide pyrophosphatase precursor XP_001383891.2 1394172 R 322104 CDS PICST_82969 126134735 4837765 complement(1396647..1398014) 1 NC_009043.1 go_function: oxidoreductase activity; go_process: amino acid metabolism; NADP-glutamate dehydrogenase 1398014 GDH3 4837765 GDH3 Pichia stipitis CBS 6054 NADP-glutamate dehydrogenase XP_001383892.1 1396647 R 322104 CDS PICST_67388 150864646 4837766 1399674..1401020 1 NC_009043.1 predicted protein 1401020 4837766 PICST_67388 Pichia stipitis CBS 6054 predicted protein XP_001383558.2 1399674 D 322104 CDS PICST_71224 126134069 4837966 1401229..1402278 1 NC_009043.1 go_function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity; go_process: steroid biosynthesis; Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating 1402278 ERG26 4837966 ERG26 Pichia stipitis CBS 6054 Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating XP_001383559.1 1401229 D 322104 CDS PICST_30971 150864890 4837963 complement(1402443..1403162) 1 NC_009043.1 predicted protein 1403162 4837963 PICST_30971 Pichia stipitis CBS 6054 predicted protein XP_001383893.2 1402443 R 322104 CDS PICST_88548 150864647 4838251 1404112..1405695 1 NC_009043.1 predicted protein 1405695 4838251 PICST_88548 Pichia stipitis CBS 6054 predicted protein XP_001383560.2 1404112 D 322104 CDS PICST_35641 150864891 4837962 complement(1406780..1410370) 1 NC_009043.1 go_function: DNA binding; transcription factor activity; go_process: regulation of transcription; RNA polymerase III transcription factor 1410370 TFC3 4837962 TFC3 Pichia stipitis CBS 6054 RNA polymerase III transcription factor XP_001383894.2 1406780 R 322104 CDS PICST_43393 126134073 4838252 1410550..1411287 1 NC_009043.1 predicted protein 1411287 4838252 PICST_43393 Pichia stipitis CBS 6054 predicted protein XP_001383561.1 1410550 D 322104 CDS PICST_67392 126134075 4837961 join(1411644..1411723,1412027..1412573) 1 NC_009043.1 translation elongation factor eEF1beta; go_component: eukaryotic translation elongation factor 1 complex; go_function: translation elongation factor activity; go_process: translational elongation; Elongation factor 1 beta/delta chain 1412573 EFB1 4837961 EFB1 Pichia stipitis CBS 6054 Elongation factor 1 beta/delta chain XP_001383562.1 1411644 D 322104 CDS PICST_30977 150864892 4837960 complement(join(1413146..1413157,1413184..1414435,1414489..1414538)) 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1414538 4837960 PICST_30977 Pichia stipitis CBS 6054 predicted protein XP_001383895.2 1413146 R 322104 CDS PICST_30978 150864893 4838253 complement(1417596..1418216) 1 NC_009043.1 predicted protein 1418216 4838253 PICST_30978 Pichia stipitis CBS 6054 predicted protein XP_001383896.2 1417596 R 322104 CDS PICST_30979 150864894 4838254 complement(1418378..1418947) 1 NC_009043.1 go_function: nucleic acid binding; predicted protein 1418947 4838254 PICST_30979 Pichia stipitis CBS 6054 predicted protein XP_001383897.2 1418378 R 322104 CDS PICST_30981 150864648 4838260 join(1425442..1426089,1426110..1426115) 1 NC_009043.1 predicted protein 1426115 4838260 PICST_30981 Pichia stipitis CBS 6054 predicted protein XP_001383563.2 1425442 D 322104 CDS PICST_30986 150864895 4837928 complement(join(1450324..1450385,1450442..1450809,1451377..1452959)) 1 NC_009043.1 Nucleic acid binding, Zn finger Tps5.4; go_function: nucleic acid binding; RNA-directed DNA polymerase 1452959 POL5.4 4837928 POL5.4 Pichia stipitis CBS 6054 RNA-directed DNA polymerase XP_001383898.2 1450324 R 322104 CDS PICST_24771 150864896 4838261 complement(<1459424..>1461247) 1 NC_009043.1 Major Repeat Sequence; hypothetical MRS512-like protein >1461247 MRS512 4838261 MRS512 Pichia stipitis CBS 6054 hypothetical MRS512-like protein XP_001383899.2 <1459424 R 322104 CDS PICST_42812 150864649 4838262 1462885..1465878 1 NC_009043.1 go_function: chitin synthase activity; go_process: chitin biosynthesis; chitin synthase 1465878 CHS1 4838262 CHS1 Pichia stipitis CBS 6054 chitin synthase XP_001383564.2 1462885 D 322104 CDS PICST_65479 126134081 4837916 1466392..1467891 1 NC_009043.1 Regulator of chromosome condensation (PRP20 protein) (Pheromone response pathway component SRM1); go_component: nucleus; go_function: DNA binding; go_process: cell cycle; mitosis; pheromone response pathway 1467891 PRP20 4837916 PRP20 Pichia stipitis CBS 6054 pheromone response pathway XP_001383565.1 1466392 D 322104 CDS PICST_30991 126134083 4837914 1468175..1469308 1 NC_009043.1 CCR4 Associated Factor 40 kDa; go_component: CCR4-NOT complex; go_process: regulation of transcription from RNA polymerase II promoter; sex differentiation; Cell differentiation protein 1469308 CAF40 4837914 CAF40 Pichia stipitis CBS 6054 Cell differentiation protein XP_001383566.1 1468175 D 322104 CDS PICST_30992 150864650 4837911 1469509..1471278 1 NC_009043.1 Multi antimicrobial extrusion protein; go_component: membrane; go_function: drug transporter activity; antiporter activity; go_process: multidrug transport; ethionine resistance protein 1471278 ERC1 4837911 ERC1 Pichia stipitis CBS 6054 ethionine resistance protein XP_001383567.2 1469509 D 322104 CDS PICST_77242 126134751 4837970 complement(1471347..1472711) 1 NC_009043.1 Essential Nuclear Protein bystin-family protein putative nuclear protein with effects on N-glycosylation of proteins in the secretory pathway by similarity to yeast end1; bystin-family protein putative nuclear protein 1472711 ENP1 4837970 ENP1 Pichia stipitis CBS 6054 bystin-family protein putative nuclear protein XP_001383900.1 1471347 R 322104 CDS PICST_42966 150864897 4838263 complement(1473022..1475853) 1 NC_009043.1 go_function: phosphoinositide phospholipase C activity; phospholipase C activity; go_process: lipid metabolism; signal transduction; intracellular signaling cascade; 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase 1 (Phosphoinositide phospholipase C) (PLC-1) (Phospholipase C-1) 1475853 PLC1 4838263 PLC1 Pichia stipitis CBS 6054 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase 1 (Phosphoinositide phospholipase C) (PLC-1) (Phospholipase C-1) XP_001383901.2 1473022 R 322104 CDS PICST_65481 150864898 4838325 complement(1476013..1477779) 1 NC_009043.1 go_function: catalytic activity; go_process: histidine biosynthesis; imidazole glycerol phosphate synthase 1477779 HIS7 4838325 HIS7 Pichia stipitis CBS 6054 imidazole glycerol phosphate synthase XP_001383902.2 1476013 R 322104 CDS PICST_43582 150864899 4838326 complement(1478023..>1479645) 1 NC_009043.1 predicted protein >1479645 4838326 PICST_43582 Pichia stipitis CBS 6054 predicted protein XP_001383903.2 1478023 R 322104 CDS PICST_30997 126134087 4838327 1481590..1482111 1 NC_009043.1 hypothetical protein 1482111 4838327 PICST_30997 Pichia stipitis CBS 6054 hypothetical protein XP_001383568.1 1481590 D 322104 CDS PICST_57883 150864651 4838069 1483263..1483952 1 NC_009043.1 predicted protein 1483952 4838069 PICST_57883 Pichia stipitis CBS 6054 predicted protein XP_001383569.2 1483263 D 322104 CDS PICST_30999 150864652 4838067 1484211..1484957 1 NC_009043.1 predicted protein 1484957 4838067 PICST_30999 Pichia stipitis CBS 6054 predicted protein XP_001383570.2 1484211 D 322104 CDS PICST_44008 126134759 4837849 complement(1485078..1485746) 1 NC_009043.1 Yeast homolog of the human leukemogenic protein AF9; member of a yeast chromatin modifying complex; go_component: nucleus; go_process: regulation of transcription, DNA-dependent; yeast chromatin modifying complex protein 1485746 YAF9 4837849 YAF9 Pichia stipitis CBS 6054 yeast chromatin modifying complex protein XP_001383904.1 1485078 R 322104 CDS PICST_82710 150864900 4838328 complement(join(1486008..1486160,1486218..1489421)) 1 NC_009043.1 Inositol-1,4,5-triphosphate 5-phosphatase 1489421 INP52 4838328 INP52 Pichia stipitis CBS 6054 Inositol-1,4,5-triphosphate 5-phosphatase XP_001383905.2 1486008 R 322104 CDS PICST_57283 150864653 4837997 1489846..1490487 1 NC_009043.1 hypothetical protein 1490487 4837997 PICST_57283 Pichia stipitis CBS 6054 hypothetical protein XP_001383571.2 1489846 D 322104 CDS PICST_27034 126134095 4837846 <1490820..>1491575 1 NC_009043.1 predicted protein >1491575 4837846 PICST_27034 Pichia stipitis CBS 6054 predicted protein XP_001383572.1 <1490820 D 322104 CDS PICST_71538 126134097 4838032 1492688..1493062 1 NC_009043.1 cytochrome b5 1493062 CYB5 4838032 CYB5 Pichia stipitis CBS 6054 cytochrome b5 XP_001383573.1 1492688 D 322104 CDS PICST_56894 126134099 4838033 1495581..1496738 1 NC_009043.1 go_function: oxidoreductase activity; go_process: electron transport; 2-nitropropane dioxygenases 1496738 NPO2 4838033 NPO2 Pichia stipitis CBS 6054 2-nitropropane dioxygenases XP_001383574.1 1495581 D 322104 CDS PICST_43342 126134101 4838008 1497106..1497300 1 NC_009043.1 predicted protein 1497300 4838008 PICST_43342 Pichia stipitis CBS 6054 predicted protein XP_001383575.1 1497106 D 322104 CDS PICST_57133 150864654 4838005 join(1497895..1498163,1498188..1498890) 1 NC_009043.1 Nuclear-encoded mitochondrial protein involved in transport of flavine into mitochondria; go_component: membrane; go_function: binding; go_process: transport; Mitochondrial FAD carrier protein 1498890 FLX1 4838005 FLX1 Pichia stipitis CBS 6054 Mitochondrial FAD carrier protein XP_001383576.2 1497895 D 322104 CDS PICST_31007 150864655 4837982 1499283..1500326 1 NC_009043.1 go_function: RNA binding; ribonuclease H activity; predicted protein 1500326 4837982 PICST_31007 Pichia stipitis CBS 6054 predicted protein XP_001383577.2 1499283 D 322104 CDS PICST_82614 126134107 4838035 1500998..1502401 1 NC_009043.1 go_function: acyltransferase activity; protein binding; go_process: metabolism; dihydrolipoamide acetyltransferase component 1502401 LAT1 4838035 LAT1 Pichia stipitis CBS 6054 dihydrolipoamide acetyltransferase component XP_001383578.1 1500998 D 322104 CDS PICST_31009 150864901 4838029 complement(join(1502862..1505687,1505801..1505854)) 1 NC_009043.1 predicted protein 1505854 4838029 PICST_31009 Pichia stipitis CBS 6054 predicted protein XP_001383906.2 1502862 R 322104 CDS PICST_57574 126134109 4837998 join(1507061..1507878,1508017,1508074..1508574) 1 NC_009043.1 Transcription factor for RNA polymerase III; go_function: catalytic activity; go_process: metabolism; putative transcription initiation factor 1508574 TFC7 4837998 TFC7 Pichia stipitis CBS 6054 putative transcription initiation factor XP_001383579.1 1507061 D 322104 CDS PICST_76723 150864902 4838068 complement(1508683..1511133) 1 NC_009043.1 go_component: COPII vesicle coat; go_function: protein binding; go_process: intracellular protein transport; predicted protein 1511133 4838068 PICST_76723 Pichia stipitis CBS 6054 predicted protein XP_001383907.2 1508683 R 322104 CDS PICST_42797 126134111 4837999 <1513919..1515514 1 NC_009043.1 Lysyl-tRNA synthetase, mitochondrial precursor (Lysine--tRNA ligase) (LysRS); go_component: cytoplasm; go_function: tRNA ligase activity; ATP binding; nucleic acid binding; go_process: tRNA aminoacylation for protein translation; mitochondrial lysine-tRNA synthetase 1515514 MSK1 4837999 MSK1 Pichia stipitis CBS 6054 mitochondrial lysine-tRNA synthetase XP_001383580.1 <1513919 D 322104 CDS PICST_57832 150864903 4838037 complement(1516067..1517014) 1 NC_009043.1 predicted protein 1517014 4838037 PICST_57832 Pichia stipitis CBS 6054 predicted protein XP_001383908.2 1516067 R 322104 CDS PICST_42941 150864904 4838000 complement(join(1517562..1519411,1519472..1520006)) 1 NC_009043.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 1520006 ZAS1 4838000 ZAS1 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001383909.2 1517562 R 322104 CDS PICST_31015 150864905 4837860 complement(join(1522612..1523524,1523584..1523600)) 1 NC_009043.1 aldo/keto reductase 1523600 GCY2 4837860 GCY2 Pichia stipitis CBS 6054 aldo/keto reductase XP_001383910.2 1522612 R 322104 CDS PICST_35662 150864906 4837861 complement(1524223..1525878) 1 NC_009043.1 probable hexose transporter; go_component: integral to membrane; go_function: transporter activity; go_process: transport; hexose transporter 1525878 MFS5 4837861 MFS5 Pichia stipitis CBS 6054 hexose transporter XP_001383911.2 1524223 R 322104 CDS PICST_57213 150864656 4837862 1526758..1528638 1 NC_009043.1 hypothetical conserved protein of unknown function 1528638 4837862 PICST_57213 Pichia stipitis CBS 6054 hypothetical conserved protein of unknown function XP_001383581.2 1526758 D 322104 CDS PICST_44196 150864657 4838238 join(<1531174..1531487,1531713..>1536639) 1 NC_009043.1 GTPase activating protein BEM2/IPL2 (Bud emergence protein 2); go_function: guanyl-nucleotide exchange factor activity; go_process: intracellular signaling cascade; bud-emergence protein 1531487 BEM2 4838238 BEM2 Pichia stipitis CBS 6054 bud-emergence protein XP_001383582.2 <1531174 D 322104 CDS PICST_76929 126134775 4838223 complement(1536968..1538188) 1 NC_009043.1 by homology; tandem duplication; purine nucleoside permease 1538188 NUP3 4838223 NUP3 Pichia stipitis CBS 6054 purine nucleoside permease XP_001383912.1 1536968 R 322104 CDS PICST_31020 150864907 4837863 complement(1539031..1540239) 1 NC_009043.1 by homology; tandem duplication; purine nucleoside permease 1540239 NUP2 4837863 NUP2 Pichia stipitis CBS 6054 purine nucleoside permease XP_001383913.2 1539031 R 322104 CDS PICST_31021 150864658 4837941 1541465..1544656 1 NC_009043.1 go_component: nucleus; go_function: ATP binding; go_process: chromosome segregation; Protein involved in recombination repair 1544656 RHC18 4837941 RHC18 Pichia stipitis CBS 6054 Protein involved in recombination repair XP_001383583.2 1541465 D 322104 CDS PICST_82897 150864908 4837894 complement(join(<1544625..1544691,1544999..1546395)) 1 NC_009043.1 predicted protein 1546395 4837894 PICST_82897 Pichia stipitis CBS 6054 predicted protein XP_001383914.2 <1544625 R 322104 CDS PICST_57776 150864659 4837942 join(1546969..1547067,1547080..1547988) 1 NC_009043.1 go_component: membrane; go_process: signal transduction; predicted protein 1547988 4837942 PICST_57776 Pichia stipitis CBS 6054 predicted protein XP_001383584.2 1546969 D 322104 CDS PICST_31024 150864909 4837745 complement(1548276..1549136) 1 NC_009043.1 predicted protein 1549136 4837745 PICST_31024 Pichia stipitis CBS 6054 predicted protein XP_001383915.2 1548276 R 322104 CDS PICST_31025 150864910 4837943 complement(1549316..1550323) 1 NC_009043.1 predicted protein 1550323 4837943 PICST_31025 Pichia stipitis CBS 6054 predicted protein XP_001383916.2 1549316 R 322104 CDS PICST_67407 150864911 4837944 complement(1551648..1552439) 1 NC_009043.1 predicted protein 1552439 4837944 PICST_67407 Pichia stipitis CBS 6054 predicted protein XP_001383917.2 1551648 R 322104 CDS PICST_57408 150864912 4837945 complement(<1553754..1554386) 1 NC_009043.1 go_component: intracellular; go_function: exonuclease activity; predicted protein 1554386 4837945 PICST_57408 Pichia stipitis CBS 6054 predicted protein XP_001383918.2 <1553754 R 322104 CDS PICST_44334 150864660 4838300 1554772..1555266 1 NC_009043.1 predicted protein 1555266 4838300 PICST_44334 Pichia stipitis CBS 6054 predicted protein XP_001383585.2 1554772 D 322104 CDS PICST_31029 126134789 4838076 complement(join(1555579..1555815,1556202..1556228)) 1 NC_009043.1 go_function: acyl-CoA binding; predicted protein 1556228 4838076 PICST_31029 Pichia stipitis CBS 6054 predicted protein XP_001383919.1 1555579 R 322104 CDS PICST_88182 150864913 4838301 complement(join(1556907..1561503,1561585..1561763)) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; two-component response regulator activity; DNA binding; go_process: protein amino acid phosphorylation; two-component signal transduction system (phosphorelay); regulation of transcription, DNA-dependent; predicted protein 1561763 4838301 PICST_88182 Pichia stipitis CBS 6054 predicted protein XP_001383920.2 1556907 R 322104 CDS PICST_67409 126134793 4838302 complement(1563925..1564527) 1 NC_009043.1 predicted protein 1564527 4838302 PICST_67409 Pichia stipitis CBS 6054 predicted protein XP_001383921.1 1563925 R 322104 CDS PICST_31032 150864914 4838303 complement(1566748..1569159) 1 NC_009043.1 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; Fungal transcriptional regulatory protein 1569159 UGA3 4838303 UGA3 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001383922.2 1566748 R 322104 CDS PICST_31033 126134797 4838214 complement(1569924..1571162) 1 NC_009043.1 Salicylate hydroxylase (Salicylate 1-monooxygenase) (bacterial); go_function: monooxygenase activity; go_process: aromatic compound metabolism; Salicylate hydroxylase (Salicylate 1-monooxygenase) 1571162 NHG3 4838214 NHG3 Pichia stipitis CBS 6054 Salicylate hydroxylase (Salicylate 1-monooxygenase) XP_001383923.1 1569924 R 322104 CDS PICST_31034 150864915 4838215 complement(join(1571882..1573300,1576122..1576145)) 1 NC_009043.1 putative allantoate permease 1576145 DAL10 4838215 DAL10 Pichia stipitis CBS 6054 putative allantoate permease XP_001383924.2 1571882 R 322104 CDS PICST_43564 150864661 4838216 1576826..>1577983 1 NC_009043.1 similar to zeaxanthin epoxidase ABA2; Aromatic-ring hydroxylase >1577983 SAL1 4838216 SAL1 Pichia stipitis CBS 6054 Aromatic-ring hydroxylase XP_001383586.2 1576826 D 322104 CDS PICST_57112 150864916 4838024 complement(1578340..>1579038) 1 NC_009043.1 predicted protein >1579038 4838024 PICST_57112 Pichia stipitis CBS 6054 predicted protein XP_001383925.2 1578340 R 322104 CDS PICST_31037 126134803 4838217 complement(join(1581063..1583353,1583426..1583810)) 1 NC_009043.1 predicted protein 1583810 4838217 PICST_31037 Pichia stipitis CBS 6054 predicted protein XP_001383926.1 1581063 R 322104 CDS PICST_82482 150864662 4838084 join(1586498..1587698,1587729..1589023) 1 NC_009043.1 predicted protein 1589023 4838084 PICST_82482 Pichia stipitis CBS 6054 predicted protein XP_001383587.2 1586498 D 322104 CDS PICST_56939 126134127 4837858 join(1589521..1589612,1589668..>1589785) 1 NC_009043.1 predicted protein 1589612 4837858 PICST_56939 Pichia stipitis CBS 6054 predicted protein XP_001383588.1 1589521 D 322104 CDS PICST_31039 126134129 4838197 1590341..1592263 1 NC_009043.1 predicted protein 1592263 4838197 PICST_31039 Pichia stipitis CBS 6054 predicted protein XP_001383589.1 1590341 D 322104 CDS PICST_43383 126134131 4837912 1593526..>1593933 1 NC_009043.1 predicted protein >1593933 4837912 PICST_43383 Pichia stipitis CBS 6054 predicted protein XP_001383590.1 1593526 D 322104 CDS PICST_31041 150864663 4837746 1595583..1596815 1 NC_009043.1 hypothetical serine rich glycoprotein 1596815 4837746 PICST_31041 Pichia stipitis CBS 6054 hypothetical serine rich glycoprotein XP_001383591.2 1595583 D 322104 CDS PICST_57358 126134135 4838066 1597647..>1598099 1 NC_009043.1 predicted protein >1598099 4838066 PICST_57358 Pichia stipitis CBS 6054 predicted protein XP_001383592.1 1597647 D 322104 CDS PICST_71429 150864917 4838272 complement(1598963..1601260) 1 NC_009043.1 predicted protein 1601260 4838272 PICST_71429 Pichia stipitis CBS 6054 predicted protein XP_001383927.2 1598963 R 322104 CDS PICST_31044 126134137 4838085 1602198..1602368 1 NC_009043.1 go_component: ribosome; RPS29A; ribosomal protein S29A (S36A) (YS29) 1602368 RPS29A 4838085 RPS29A Pichia stipitis CBS 6054 RPS29A; ribosomal protein S29A (S36A) (YS29) XP_001383593.1 1602198 D 322104 CDS PICST_67415 150864918 4837709 complement(join(1603308..1604113,1604315..1604318,1604376..1604618)) 1 NC_009043.1 predicted protein 1604618 4837709 PICST_67415 Pichia stipitis CBS 6054 predicted protein XP_001383928.2 1603308 R 322104 CDS PICST_65493 126134809 4838086 complement(join(1605916..1606383,1606631..1606648)) 1 NC_009043.1 predicted protein 1606648 4838086 PICST_65493 Pichia stipitis CBS 6054 predicted protein XP_001383929.1 1605916 R 322104 CDS PICST_31047 150864664 4838087 1608167..1610578 1 NC_009043.1 hypothetical protein 1610578 4838087 PICST_31047 Pichia stipitis CBS 6054 hypothetical protein XP_001383594.2 1608167 D 322104 CDS PICST_56697 150864919 4838162 complement(join(1610751..1611290,1611318..>1612061)) 1 NC_009043.1 predicted protein 1611290 4838162 PICST_56697 Pichia stipitis CBS 6054 predicted protein XP_001383930.2 1610751 R 322104 CDS PICST_77158 150864920 4838088 complement(1613539..1616412) 1 NC_009043.1 predicted protein 1616412 4838088 PICST_77158 Pichia stipitis CBS 6054 predicted protein XP_001383931.2 1613539 R 322104 CDS PICST_17338 126134815 4838089 complement(<1617197..1618621) 1 NC_009043.1 go_process: protein folding; predicted protein 1618621 4838089 PICST_17338 Pichia stipitis CBS 6054 predicted protein XP_001383932.1 <1617197 R 322104 CDS PICST_56847 150864921 4837921 complement(join(1619810..1620187,1620215..1620616,1620635..1621210)) 1 NC_009043.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 1621210 4837921 PICST_56847 Pichia stipitis CBS 6054 predicted protein XP_001383933.2 1619810 R 322104 CDS PICST_57353 126134141 4837922 join(1621567..1621617,1621781..1622098) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: RNA binding; structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1622098 4837922 PICST_57353 Pichia stipitis CBS 6054 predicted protein XP_001383595.1 1621567 D 322104 CDS PICST_43245 150864665 4837699 <1630558..1631205 1 NC_009043.1 predicted protein 1631205 4837699 PICST_43245 Pichia stipitis CBS 6054 predicted protein XP_001383596.2 <1630558 D 322104 CDS PICST_43206 126134819 4838210 complement(1631280..1632755) 1 NC_009043.1 go_function: glutathione synthase activity; ATP binding; go_process: glutathione biosynthesis; glutathione synthetase 1632755 GSH2 4838210 GSH2 Pichia stipitis CBS 6054 glutathione synthetase XP_001383934.1 1631280 R 322104 CDS PICST_77124 126134145 4837923 join(1633417,1633907..1634235) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: translational elongation; predicted protein 1634235 4837923 PICST_77124 Pichia stipitis CBS 6054 predicted protein XP_001383597.1 1633417 D 322104 CDS PICST_57312 150864922 4838104 complement(join(1634388..1635247,1635293..>1635680)) 1 NC_009043.1 predicted protein 1635247 4838104 PICST_57312 Pichia stipitis CBS 6054 predicted protein XP_001383935.2 1634388 R 322104 CDS PICST_77247 126134823 4837809 complement(1636510..1637706) 1 NC_009043.1 go_process: amino acid metabolism; cystathionine gamma-lyase 1637706 CYS3 4837809 CYS3 Pichia stipitis CBS 6054 cystathionine gamma-lyase XP_001383936.1 1636510 R 322104 CDS PICST_31059 126134147 4837810 1639771..1640259 1 NC_009043.1 predicted protein 1640259 4837810 PICST_31059 Pichia stipitis CBS 6054 predicted protein XP_001383598.1 1639771 D 322104 CDS PICST_42981 150864923 4837913 complement(1640501..1641127) 1 NC_009043.1 predicted protein 1641127 4837913 PICST_42981 Pichia stipitis CBS 6054 predicted protein XP_001383937.2 1640501 R 322104 CDS PICST_43296 126134827 4837811 complement(1641862..1642974) 1 NC_009043.1 predicted protein 1642974 4837811 PICST_43296 Pichia stipitis CBS 6054 predicted protein XP_001383938.1 1641862 R 322104 CDS PICST_43041 150864666 4837812 1643892..1645043 1 NC_009043.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 1645043 4837812 PICST_43041 Pichia stipitis CBS 6054 predicted protein XP_001383599.2 1643892 D 322104 CDS PICST_57110 150864667 4837990 join(1645541..1646000,1646118..1648939) 1 NC_009043.1 SNF2 family DNA-dependent ATPase helicase of the Snf2/Rad54 family Shows homology to SNF2 transcriptional regulator; go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; helicase of the Snf2/Rad54 family 1648939 FUN30 4837990 FUN30 Pichia stipitis CBS 6054 helicase of the Snf2/Rad54 family XP_001383600.2 1645541 D 322104 CDS PICST_82838 150864668 4838118 1649263..1650027 1 NC_009043.1 predicted protein 1650027 4838118 PICST_82838 Pichia stipitis CBS 6054 predicted protein XP_001383601.2 1649263 D 322104 CDS PICST_67423 150864924 4838360 complement(1650439..1652481) 1 NC_009043.1 predicted protein 1652481 4838360 PICST_67423 Pichia stipitis CBS 6054 predicted protein XP_001383939.2 1650439 R 322104 CDS PICST_31066 126134155 4837813 1653202..1653540 1 NC_009043.1 predicted protein 1653540 4837813 PICST_31066 Pichia stipitis CBS 6054 predicted protein XP_001383602.1 1653202 D 322104 CDS PICST_88330 150864925 4838239 complement(1654612..1655817) 1 NC_009043.1 flavohemoglobin (bacterial); go_function: oxidoreductase activity; go_process: oxygen transport; electron transport; flavohemoglobin 1655817 YHB1 4838239 YHB1 Pichia stipitis CBS 6054 flavohemoglobin XP_001383940.2 1654612 R 322104 CDS PICST_83025 150864926 4837853 complement(join(1657088..1658115,1658140..1658890)) 1 NC_009043.1 predicted protein 1658890 4837853 PICST_83025 Pichia stipitis CBS 6054 predicted protein XP_001383941.2 1657088 R 322104 CDS PICST_43881 150864669 4837854 1659871..1661904 1 NC_009043.1 predicted protein 1661904 4837854 PICST_43881 Pichia stipitis CBS 6054 predicted protein XP_001383603.2 1659871 D 322104 CDS PICST_88760 150864670 4837722 1662934..1664058 1 NC_009043.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; alcohol dehydrogenase (NADP dependent) 1664058 ADH3 4837722 ADH3 Pichia stipitis CBS 6054 alcohol dehydrogenase (NADP dependent) XP_001383604.2 1662934 D 322104 CDS PICST_57623 150864671 4837906 join(<1664750..1665081,1665121..1665588,1665646..1665925) 1 NC_009043.1 go_function: catalytic activity; predicted protein 1665925 4837906 PICST_57623 Pichia stipitis CBS 6054 predicted protein XP_001383605.2 <1664750 D 322104 CDS PICST_57474 126134835 4838064 complement(1666315..1666587) 1 NC_009043.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1666587 4838064 PICST_57474 Pichia stipitis CBS 6054 predicted protein XP_001383942.1 1666315 R 322104 CDS PICST_35694 150864672 4837855 join(1666833..1666861,1667018..1668764) 1 NC_009043.1 RNA helicase required for 60S ribosomal subunit assembly; go_function: nucleic acid binding; helicase activity; ATP binding; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; ATP-dependent RNA helicase DBP6 (DEAD-box protein 6) 1668764 DBP6 4837855 DBP6 Pichia stipitis CBS 6054 ATP-dependent RNA helicase DBP6 (DEAD-box protein 6) XP_001383606.2 1666833 D 322104 CDS PICST_56808 150864673 4838141 join(1669235..1669603,1669625..1669822,1669892..1669946,1670076..1671464,1671486..1672367,1672392..1672702) 1 NC_009043.1 involved in DNA repair; go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; DNA dependent ATPase 1672702 RAD26 4838141 RAD26 Pichia stipitis CBS 6054 DNA dependent ATPase XP_001383607.2 1669235 D 322104 CDS PICST_57097 150864674 4837702 join(<1673148..1673414,1673463..1673978) 1 NC_009043.1 predicted protein 1673978 4837702 PICST_57097 Pichia stipitis CBS 6054 predicted protein XP_001383608.2 <1673148 D 322104 CDS PICST_67427 150864675 4837677 1683718..1685223 1 NC_009043.1 go_function: DNA binding; transcription factor activity; go_process: regulation of transcription, DNA-dependent; predicted protein 1685223 4837677 PICST_67427 Pichia stipitis CBS 6054 predicted protein XP_001383609.2 1683718 D 322104 CDS PICST_13204 150864676 4838268 <1689653..>1690213 1 NC_009043.1 predicted protein >1690213 4838268 PICST_13204 Pichia stipitis CBS 6054 predicted protein XP_001383610.2 <1689653 D 322104 CDS PICST_57166 150864677 4838208 1690753..1692927 1 NC_009043.1 Phenol 2-monooxygenase (Phenol hydroxylase); go_function: monooxygenase activity; go_process: aromatic compound metabolism; electron transport; phenol 2-monooxygenase 1692927 PHH2 4838208 PHH2 Pichia stipitis CBS 6054 phenol 2-monooxygenase XP_001383611.2 1690753 D 322104 CDS PICST_42853 150864927 4838161 complement(1693018..>1694979) 1 NC_009043.1 predicted protein >1694979 4838161 PICST_42853 Pichia stipitis CBS 6054 predicted protein XP_001383943.2 1693018 R 322104 CDS PICST_77210 150864928 4837856 complement(1698662..1700446) 1 NC_009043.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; quinate permease 1700446 QUP1 4837856 QUP1 Pichia stipitis CBS 6054 quinate permease XP_001383944.2 1698662 R 322104 CDS PICST_57349 150864678 4837800 join(1702211..1702527,1702544..1702579,1702630..1703761,1703816..1704370) 1 NC_009043.1 go_process: regulation of cell cycle; DNA replication initiation; predicted protein 1704370 4837800 PICST_57349 Pichia stipitis CBS 6054 predicted protein XP_001383612.2 1702211 D 322104 CDS PICST_43639 150864679 4838016 <1706401..1706676 1 NC_009043.1 predicted protein 1706676 4838016 PICST_43639 Pichia stipitis CBS 6054 predicted protein XP_001383613.2 <1706401 D 322104 CDS PICST_31083 150864929 4837930 complement(1706804..1706953) 1 NC_009043.1 predicted protein 1706953 4837930 PICST_31083 Pichia stipitis CBS 6054 predicted protein XP_001383945.2 1706804 R 322104 CDS PICST_57317 126134179 4837801 <1707928..1708212 1 NC_009043.1 predicted protein 1708212 4837801 PICST_57317 Pichia stipitis CBS 6054 predicted protein XP_001383614.1 <1707928 D 322104 CDS PICST_56758 150864680 4838346 <1708302..1708547 1 NC_009043.1 predicted protein 1708547 4838346 PICST_56758 Pichia stipitis CBS 6054 predicted protein XP_001383615.2 <1708302 D 322104 CDS PICST_71375 150864930 4837989 complement(1714306..1714671) 1 NC_009043.1 Unknown protein 1714671 4837989 PICST_71375 Pichia stipitis CBS 6054 Unknown protein XP_001383946.2 1714306 R 322104 CDS PICST_31085 126134845 4837802 complement(1721539..1722168) 1 NC_009043.1 predicted protein 1722168 4837802 PICST_31085 Pichia stipitis CBS 6054 predicted protein XP_001383947.1 1721539 R 322104 CDS PICST_31086 126134847 4837803 complement(1724116..1724745) 1 NC_009043.1 predicted protein 1724745 4837803 PICST_31086 Pichia stipitis CBS 6054 predicted protein XP_001383948.1 1724116 R 322104 CDS PICST_88701 150864681 4837804 join(1727478..1728986,1729071..1729439) 1 NC_009043.1 predicted protein 1729439 4837804 PICST_88701 Pichia stipitis CBS 6054 predicted protein XP_001383616.2 1727478 D 322104 CDS PICST_8645 126134849 4837988 complement(<1730170..>1730532) 1 NC_009043.1 predicted protein >1730532 4837988 PICST_8645 Pichia stipitis CBS 6054 predicted protein XP_001383949.1 <1730170 R 322104 CDS PICST_77241 150864931 4837756 complement(<1730878..1731654) 1 NC_009043.1 predicted protein 1731654 4837756 PICST_77241 Pichia stipitis CBS 6054 predicted protein XP_001383950.2 <1730878 R 322104 CDS PICST_43962 150864682 4837757 1733607..1734296 1 NC_009043.1 predicted protein 1734296 4837757 PICST_43962 Pichia stipitis CBS 6054 predicted protein XP_001383617.2 1733607 D 322104 CDS PICST_88514 150864683 4837936 1735496..1737163 1 NC_009043.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 1737163 4837936 PICST_88514 Pichia stipitis CBS 6054 predicted protein XP_001383618.2 1735496 D 322104 CDS PICST_83023 150864932 4837939 complement(join(1737559..1739293,1739327..1739460,1739533..1739679,1739722..1739755,1739870..1739979,1740001..1740132)) 1 NC_009043.1 predicted protein 1740132 4837939 PICST_83023 Pichia stipitis CBS 6054 predicted protein XP_001383951.2 1737559 R 322104 CDS PICST_76670 150864684 4837758 join(1742348..1743132,1743154..1745449) 1 NC_009043.1 Fungal specific transcription factor; go_function: DNA binding; Fungal transcriptional regulatory protein 1745449 FST5 4837758 FST5 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001383619.2 1742348 D 322104 CDS PICST_31093 150864933 4837844 complement(1745674..1746654) 1 NC_009043.1 predicted protein 1746654 4837844 PICST_31093 Pichia stipitis CBS 6054 predicted protein XP_001383952.2 1745674 R 322104 CDS PICST_43552 150864685 4837759 join(1748361..1748809,1748948..1749347) 1 NC_009043.1 predicted protein 1749347 4837759 PICST_43552 Pichia stipitis CBS 6054 predicted protein XP_001383620.2 1748361 D 322104 CDS PICST_31095 150864934 4837691 complement(1750762..1755120) 1 NC_009043.1 hypothetical protein occurs in about 10 places in the P. stipitis genome; agglutinin-like protein 2 1755120 ALS2 4837691 ALS2 Pichia stipitis CBS 6054 agglutinin-like protein 2 XP_001383953.2 1750762 R 322104 CDS PICST_67434 150864686 4837760 join(1760663..1760726,1760874..1760922,1761067..1761559) 1 NC_009043.1 go_component: nucleosome; nucleus; go_function: DNA binding; go_process: nucleosome assembly; predicted protein 1761559 4837760 PICST_67434 Pichia stipitis CBS 6054 predicted protein XP_001383621.2 1760663 D 322104 CDS PICST_82622 150864687 4837710 1762294..1762905 1 NC_009043.1 go_function: dihydrofolate reductase activity; go_process: glycine biosynthesis; nucleotide biosynthesis; dihydrofolate reductase 1762905 DFR1 4837710 DFR1 Pichia stipitis CBS 6054 dihydrofolate reductase XP_001383622.2 1762294 D 322104 CDS PICST_88310 150864935 4838147 complement(1763056..1764345) 1 NC_009043.1 predicted protein 1764345 4838147 PICST_88310 Pichia stipitis CBS 6054 predicted protein XP_001383954.2 1763056 R 322104 CDS PICST_44069 150864936 4837761 complement(join(1764774..1765970,1766043..1766090)) 1 NC_009043.1 hypothetical protein 1766090 4837761 PICST_44069 Pichia stipitis CBS 6054 hypothetical protein XP_001383955.2 1764774 R 322104 CDS PICST_31100 150864688 4837821 1766200..1768335 1 NC_009043.1 Dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1, 6-mannosyltransferase (Mannosyltransferase ALG12); alpha-1,6- mannosyltransferase 1768335 ECM39 4837821 ECM39 Pichia stipitis CBS 6054 alpha-1,6- mannosyltransferase XP_001383623.2 1766200 D 322104 CDS PICST_31101 150864937 4837957 complement(1768413..1772318) 1 NC_009043.1 predicted protein 1772318 4837957 PICST_31101 Pichia stipitis CBS 6054 predicted protein XP_001383956.2 1768413 R 322104 CDS PICST_76656 150864689 4837822 join(1772872..1773299,1773519..1773860,1773987..1774379,1774398..1774566,1774585..1774736,1774869..1774935,1775137..1776195,1776298..1776410,1776459..1776530,1776609..1778202) 1 NC_009043.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1778202 4837822 PICST_76656 Pichia stipitis CBS 6054 predicted protein XP_001383624.2 1772872 D 322104 CDS PICST_88714 150864690 4838045 join(1779848..1782076,1782170..1782426,1782490..1782598) 1 NC_009043.1 ser/thr phosphatase involved in G1/S transition related to SAP155, SAP185, and SAP190, all of which associate with the SIT4 protein phosphatase; SIT4-Associating Protein ser/thr phosphatase involved in G1/S transition 1782598 SAP190 4838045 SAP190 Pichia stipitis CBS 6054 SIT4-Associating Protein ser/thr phosphatase involved in G1/S transition XP_001383625.2 1779848 D 322104 CDS PICST_57929 150864938 4837956 complement(1782811..1783890) 1 NC_009043.1 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains Cell wall/membrane/envelope biogenesis; go_process: metabolism; Glucosamine 6-phosphate synthetase 1783890 YNT1 4837956 YNT1 Pichia stipitis CBS 6054 Glucosamine 6-phosphate synthetase XP_001383957.2 1782811 R 322104 CDS PICST_56909 150864691 4837823 join(1784854..1785183,1785211..1785405) 1 NC_009043.1 predicted protein 1785405 4837823 PICST_56909 Pichia stipitis CBS 6054 predicted protein XP_001383626.2 1784854 D 322104 CDS PICST_57597 150864692 4838075 join(1786150..1786259,1786314..1786827) 1 NC_009043.1 predicted protein 1786827 4838075 PICST_57597 Pichia stipitis CBS 6054 predicted protein XP_001383627.2 1786150 D 322104 CDS PICST_56836 150864693 4838031 1787309..1787956 1 NC_009043.1 predicted protein 1787956 4838031 PICST_56836 Pichia stipitis CBS 6054 predicted protein XP_001383628.2 1787309 D 322104 CDS PICST_43117 150864939 4837685 complement(join(1788066..1790305,1790369..1790630)) 1 NC_009043.1 predicted protein 1790630 4837685 PICST_43117 Pichia stipitis CBS 6054 predicted protein XP_001383958.2 1788066 R 322104 CDS PICST_67440 150864940 4837824 complement(join(1791425..1794158,1794239..1794243,1794368..1795938,1796020..1796201,1796232..1796428,1796537..1796653,1796900..1797228,1797463..1797467,1797543..1797611,1797717..1797757)) 1 NC_009043.1 go_function: guanylate cyclase activity; catalytic activity; go_process: intracellular signaling cascade; signal transduction; adenylate cyclase (ATP pyrophosphate-lyase) (Adenylyl cyclase) 1797757 CDC35 4837824 CDC35 Pichia stipitis CBS 6054 adenylate cyclase (ATP pyrophosphate-lyase) (Adenylyl cyclase) XP_001383959.2 1791425 R 322104 CDS PICST_43303 150864694 4837889 join(1799754..1800860,1800930..1801451) 1 NC_009043.1 similar to ELMO3 Engulfment and cell motility; conserved hypothetical protein 1801451 ELM3 4837889 ELM3 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001383629.2 1799754 D 322104 CDS PICST_1703 150864695 4838308 <1802006..>1804021 1 NC_009043.1 ATP-dependent RNA helicase nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunits; go_function: nucleic acid binding; helicase activity; ATP binding; nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunits >1804021 DRS1 4838308 DRS1 Pichia stipitis CBS 6054 nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunits XP_001383630.2 <1802006 D 322104 CDS PICST_42830 150864696 4838009 <1804269..1804856 1 NC_009043.1 involved in transport between the late Golgi and endosome; Integral membrane protein 1804856 SYS1 4838009 SYS1 Pichia stipitis CBS 6054 Integral membrane protein XP_001383631.2 <1804269 D 322104 CDS PICST_31115 150864697 4837965 1805645..1807942 1 NC_009043.1 CTA4-like zinc finger transcription factor (CTA4) (HAP1) (CIP1); go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; zinc finger transcription factor 1807942 CTA4.2 4837965 CTA4.2 Pichia stipitis CBS 6054 zinc finger transcription factor XP_001383632.2 1805645 D 322104 CDS PICST_43336 126134217 4837937 1809054..1809815 1 NC_009043.1 peroxisomal 2,4- dienoyl-CoA reductase Glucose 1-dehydrogenase (BACTERIAL); go_function: oxidoreductase activity; go_process: metabolism; Glucose 1-dehydrogenase peroxisomal 2,4- dienoyl-CoA reductase 1809815 SPS23 4837937 SPS23 Pichia stipitis CBS 6054 Glucose 1-dehydrogenase peroxisomal 2,4- dienoyl-CoA reductase XP_001383633.1 1809054 D 322104 CDS PICST_31117 150864941 4837807 complement(1810117..1811910) 1 NC_009043.1 go_function: glycerone kinase activity; go_process: glycerol metabolism; dihydroxyacetone kinase isoenzyme I 1811910 DAK1.1 4837807 DAK1.1 Pichia stipitis CBS 6054 dihydroxyacetone kinase isoenzyme I XP_001383960.2 1810117 R 322104 CDS PICST_57049 126134219 4837890 1812575..1813045 1 NC_009043.1 Ribose-5-phosphate isomerase B (Phosphoriboisomerase B) (LACB) (RPIB) (Bacterial); go_process: carbohydrate metabolism; Ribose-5-phosphate isomerase B (Phosphoriboisomerase B) (LACB) (RPIB) 1813045 RPI1 4837890 RPI1 Pichia stipitis CBS 6054 Ribose-5-phosphate isomerase B (Phosphoriboisomerase B) (LACB) (RPIB) XP_001383634.1 1812575 D 322104 CDS PICST_44246 150864698 4837755 1815488..1817086 1 NC_009043.1 go_component: signal recognition particle (sensu Eukaryota); dicarboxylic amino acid permease 1817086 DIP5.2 4837755 DIP5.2 Pichia stipitis CBS 6054 dicarboxylic amino acid permease XP_001383635.2 1815488 D 322104 CDS PICST_56638 150864699 4838184 1817723..1819291 1 NC_009043.1 go_process: electron transport; Cytochrome P450 52A12 (Alkane hydroxylase 1) (Alkane-inducible p450alk 1) (DH-ALK2) 1819291 CP52L 4838184 CP52L Pichia stipitis CBS 6054 Cytochrome P450 52A12 (Alkane hydroxylase 1) (Alkane-inducible p450alk 1) (DH-ALK2) XP_001383636.2 1817723 D 322104 CDS PICST_35725 150864700 4837881 1820218..1821486 1 NC_009043.1 NADH:flavin oxidoreductase/12-oxophytodienoate reductase; go_function: oxidoreductase activity; go_process: electron transport; NADPH dehydrogenase (OYE31) 1821486 OYE3.1 4837881 OYE3.1 Pichia stipitis CBS 6054 NADPH dehydrogenase (OYE31) XP_001383637.2 1820218 D 322104 CDS PICST_43720 126134227 4837887 1822871..1824085 1 NC_009043.1 NAPDH dehydrogenase (old yellow enzyme) (OYE22) (EPB7); go_function: oxidoreductase activity; go_process: electron transport; NAPDH dehydrogenase (old yellow enzyme) 1824085 OYE2.2 4837887 OYE2.2 Pichia stipitis CBS 6054 NAPDH dehydrogenase (old yellow enzyme) XP_001383638.1 1822871 D 322104 CDS PICST_57167 150864701 4838189 join(1825323..1825799,1825941..1827605) 1 NC_009043.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal specific transcription factor 1827605 YIN1 4838189 YIN1 Pichia stipitis CBS 6054 Fungal specific transcription factor XP_001383639.2 1825323 D 322104 CDS PICST_58067 126134873 4838347 complement(1828322..1829203) 1 NC_009043.1 umarylacetoacetate hydralase 5-carboxymethyl-2-hydroxymuconate delta-isomerase; go_function: catalytic activity; go_process: metabolism; degradation of aromatic compounds 1829203 UMH1 4838347 UMH1 Pichia stipitis CBS 6054 degradation of aromatic compounds XP_001383961.1 1828322 R 322104 CDS PICST_57210 126134231 4837891 1829602..1830594 1 NC_009043.1 hypothetical protein 1830594 4837891 PICST_57210 Pichia stipitis CBS 6054 hypothetical protein XP_001383640.1 1829602 D 322104 CDS PICST_31126 126134875 4838309 complement(1830970..1832205) 1 NC_009043.1 Salicylate hydroxylase (Salicylate 1-monooxygenase) (bacterial); go_function: monooxygenase activity; go_process: aromatic compound metabolism; Salicylate hydroxylase (Salicylate 1-monooxygenase) 1832205 NHG1.1 4838309 NHG1.1 Pichia stipitis CBS 6054 Salicylate hydroxylase (Salicylate 1-monooxygenase) XP_001383962.1 1830970 R 322104 CDS PICST_31127 150864702 4837772 1832831..1834300 1 NC_009043.1 member of major facilitator superfamily multidrug-resistance protein (HOL4); major facilitator superfamily multidrug-resistance protein 1834300 HOL41 4837772 HOL41 Pichia stipitis CBS 6054 major facilitator superfamily multidrug-resistance protein XP_001383641.2 1832831 D 322104 CDS PICST_31128 126134877 4838017 complement(1835329..1836315) 1 NC_009043.1 dihydroflavonol-4-reductase (maize, petunia, tomato); cinnamoyl-Coa reductase 1836315 CAD1 4838017 CAD1 Pichia stipitis CBS 6054 cinnamoyl-Coa reductase XP_001383963.1 1835329 R 322104 CDS PICST_44169 150864703 4837773 1838641..1840074 1 NC_009043.1 succinate semialdehyde dehydrogenase similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase [NADP+]) (Triosephosphate dehydrogenase); go_function: oxidoreductase activity; go_process: metabolism; mitochondrial aldehyde dehydrogenase succinate semialdehyde dehydrogenase 1840074 ALD4 4837773 ALD4 Pichia stipitis CBS 6054 mitochondrial aldehyde dehydrogenase succinate semialdehyde dehydrogenase XP_001383642.2 1838641 D 322104 CDS PICST_31130 150864942 4838576 1879..8226 1 NC_009044.1 hypothetical ORF present in 3-4 copies in genome. Not conserved. Tandem repeat.; ATP-dependent DNA helicase 8226 ADD2.3 4838576 ADD2.3 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001383964.2 1879 D 322104 CDS PICST_31131 150864943 4838971 9756..16235 1 NC_009044.1 hypothetical ORF present in 3-4 copies in genome. Not conserved. Tandem repeat.; ATP-dependent DNA helicase 16235 ADD3.1 4838971 ADD3.1 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001383965.2 9756 D 322104 CDS PICST_31132 150864944 4838972 18225..22943 1 NC_009044.1 hypothetical ORF present in 3-4 copies in genome. Not conserved. Tandem repeat.; ATP-dependent DNA helicase 22943 ADD3.3 4838972 ADD3.3 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001383966.2 18225 D 322104 CDS PICST_35732 126135550 4838973 complement(join(26375..26418,27126..28047)) 1 NC_009044.1 Glycoside hydrolase, family 10 Endo-1,4-beta-xylanase precursor (Xylanase) Exoglucanase/xylanase precursor [Includes: Exoglucanase (Exocellobiohydrolase) (1,4-beta-cellobiohydrolase) (Beta-1,4-glycanase CEX) Endo-1,4-beta-xylanase B (Xylanase B)] (XYN) (GUX) (XLN); go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; Glycoside hydrolase, family 10 Endo-1,4-beta-xylanase precursor (Xylanase) Exoglucanase/xylanase precursor 28047 XYN1 4838973 XYN1 Pichia stipitis CBS 6054 Glycoside hydrolase, family 10 Endo-1,4-beta-xylanase precursor (Xylanase) Exoglucanase/xylanase precursor XP_001384299.1 26375 R 322104 CDS PICST_45137 150865186 4838766 complement(32580..33653) 1 NC_009044.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; NADPH-dependent alcohol dehydrogenase 33653 ADH7 4838766 ADH7 Pichia stipitis CBS 6054 NADPH-dependent alcohol dehydrogenase XP_001384300.2 32580 R 322104 CDS PICST_31135 150865187 4838767 complement(34352..35104) 1 NC_009044.1 Granaticin polyketide synthase putative ketoacyl reductase 2 similar to glucose 1-dehydrogenase (DHG3) (bacterial); go_function: oxidoreductase activity; go_process: metabolism; Granaticin polyketide synthase putative ketoacyl reductase 2 35104 DHK2 4838767 DHK2 Pichia stipitis CBS 6054 Granaticin polyketide synthase putative ketoacyl reductase 2 XP_001384301.2 34352 R 322104 CDS PICST_45074 126135556 4839000 complement(<36731..37123) 1 NC_009044.1 predicted protein 37123 4839000 PICST_45074 Pichia stipitis CBS 6054 predicted protein XP_001384302.1 <36731 R 322104 CDS PICST_44609 126135558 4839001 complement(<37816..38286) 1 NC_009044.1 predicted protein 38286 4839001 PICST_44609 Pichia stipitis CBS 6054 predicted protein XP_001384303.1 <37816 R 322104 CDS PICST_59173 150864945 4839002 join(39122..40718,40773..40963) 1 NC_009044.1 Ferric reductase, NADH/NADPH oxidase transmembrane component (FRP1) (FRP2) (FRE11) (FRE5) (FRE2); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; Ferric reductase, NADH/NADPH oxidase transmembrane component (7 domains) 40963 FRE4.1 4839002 FRE4.1 Pichia stipitis CBS 6054 Ferric reductase, NADH/NADPH oxidase transmembrane component (7 domains) XP_001383967.2 39122 D 322104 CDS PICST_58946 150865188 4838591 complement(41005..42264) 1 NC_009044.1 predicted protein 42264 4838591 PICST_58946 Pichia stipitis CBS 6054 predicted protein XP_001384304.2 41005 R 322104 CDS PICST_88919 126135562 4839003 complement(43103..44641) 1 NC_009044.1 ammonia permease 44641 MEP2 4839003 MEP2 Pichia stipitis CBS 6054 ammonia permease XP_001384305.1 43103 R 322104 CDS PICST_67442 150864946 4839004 join(48202..48999,49069..49275,49345..49467,49564..49774,49835..49974,50114..50166,50226..51129) 1 NC_009044.1 Suppressor of Yeast Profilin deletion GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily; Suppressor of Yeast Profilin deletion 51129 SYP1 4839004 SYP1 Pichia stipitis CBS 6054 Suppressor of Yeast Profilin deletion XP_001383968.2 48202 D 322104 CDS PICST_35738 150865189 4838592 complement(51301..51900) 1 NC_009044.1 go_component: endoplasmic reticulum; integral to membrane; go_process: intracellular protein transport; apoptosis; ER 25 kDa transmembrane protein 51900 YET1 4838592 YET1 Pichia stipitis CBS 6054 ER 25 kDa transmembrane protein XP_001384306.2 51301 R 322104 CDS PICST_58541 150865190 4839005 complement(join(52444..53100,53128..54140,54174..54941,54987..55289,55326..55448,55491..>55563)) 1 NC_009044.1 go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; manganese resistance protein MNR2 55448 MNR2 4839005 MNR2 Pichia stipitis CBS 6054 manganese resistance protein MNR2 XP_001384307.2 52444 R 322104 CDS PICST_31143 150865191 4838364 complement(56724..57149) 1 NC_009044.1 go_function: DNA binding; transcription coactivator activity; go_process: regulation of transcription, DNA-dependent; predicted protein 57149 4838364 PICST_31143 Pichia stipitis CBS 6054 predicted protein XP_001384308.2 56724 R 322104 CDS PICST_58212 150865192 4838365 complement(57443..58531) 1 NC_009044.1 D-threo-aldose 1-dehydrogenase 58531 YMT1 4838365 YMT1 Pichia stipitis CBS 6054 D-threo-aldose 1-dehydrogenase XP_001384309.2 57443 R 322104 CDS PICST_35740 150865193 4838366 complement(58992..61100) 1 NC_009044.1 predicted protein 61100 4838366 PICST_35740 Pichia stipitis CBS 6054 predicted protein XP_001384310.2 58992 R 322104 CDS PICST_31146 126134890 4838367 62839..64194 1 NC_009044.1 predicted protein 64194 4838367 PICST_31146 Pichia stipitis CBS 6054 predicted protein XP_001383969.1 62839 D 322104 CDS PICST_59466 150865194 4838593 complement(join(64314..65921,65952..66401)) 1 NC_009044.1 go_function: zinc ion binding; predicted protein 66401 4838593 PICST_59466 Pichia stipitis CBS 6054 predicted protein XP_001384311.2 64314 R 322104 CDS PICST_83421 150865195 4838368 complement(join(67113..68032,68072..68252)) 1 NC_009044.1 predicted protein 68252 4838368 PICST_83421 Pichia stipitis CBS 6054 predicted protein XP_001384312.2 67113 R 322104 CDS PICST_58365 150864947 4838369 join(69745..69796,69865..70469,70509..70787) 1 NC_009044.1 predicted protein 70787 4838369 PICST_58365 Pichia stipitis CBS 6054 predicted protein XP_001383970.2 69745 D 322104 CDS PICST_31150 150864948 4838594 71255..72349 1 NC_009044.1 Probable alpha-1,6-mannosyltransferase MNN10 (Mannan polymerase II complex MNN10 subunit) (M-Pol II subunit MNN10) (Bud emergence delay protein 1); go_component: integral to membrane; go_function: transferase activity, transferring hexosyl groups; galactosyltransferase 72349 MNN10 4838594 MNN10 Pichia stipitis CBS 6054 galactosyltransferase XP_001383971.2 71255 D 322104 CDS PICST_77329 150864949 4838595 join(73576..73767,73834..74147,74241..74253,74344..75060,75295..77202) 1 NC_009044.1 Global transcription activator that acts in complex with Snf2p, Snf5p, Snf6p, and Swi3p to assist gene-specific activators involved in the regulation of expression of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; component of SWI/SNF global activator complex 77202 SWI1 4838595 SWI1 Pichia stipitis CBS 6054 component of SWI/SNF global activator complex XP_001383972.2 73576 D 322104 CDS PICST_58359 126134898 4838596 77845..>78498 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein >78498 4838596 PICST_58359 Pichia stipitis CBS 6054 predicted protein XP_001383973.1 77845 D 322104 CDS PICST_59125 126134900 4838597 78544..79200 1 NC_009044.1 predicted protein 79200 4838597 PICST_59125 Pichia stipitis CBS 6054 predicted protein XP_001383974.1 78544 D 322104 CDS PICST_89228 150865196 4838598 complement(79301..81904) 1 NC_009044.1 Includes: Phosphoribosyl-AMP cyclohydrolase Phosphoribosyl-ATP pyrophosphohydrolase Histidinol dehydrogenase (HDH); go_function: histidinol dehydrogenase activity; phosphoribosyl-AMP cyclohydrolase activity; phosphoribosyl-ATP diphosphatase activity; go_process: histidine biosynthesis; Histidine biosynthesis trifunctional protein 81904 HIS2 4838598 HIS2 Pichia stipitis CBS 6054 Histidine biosynthesis trifunctional protein XP_001384313.2 79301 R 322104 CDS PICST_77798 150865197 4838798 complement(82334..84151) 1 NC_009044.1 predicted protein 84151 4838798 PICST_77798 Pichia stipitis CBS 6054 predicted protein XP_001384314.2 82334 R 322104 CDS PICST_45857 150865198 4838799 complement(join(<85002..85127,87776..89428)) 1 NC_009044.1 chaperonin of the HSP70 family heat shock protein 70 (SSA3) (Heat shock protein YG100); heat shock protein 70 89428 HSP70.2 4838799 HSP70.2 Pichia stipitis CBS 6054 heat shock protein 70 XP_001384315.2 <85002 R 322104 CDS PICST_31157 150865199 4838800 complement(89803..90849) 1 NC_009044.1 Stress-seventy subfamily A Heat shock protein SSA1 (Heat shock protein YG100); Stress-seventy subfamily A 90849 SSA1 4838800 SSA1 Pichia stipitis CBS 6054 Stress-seventy subfamily A XP_001384316.2 89803 R 322104 CDS PICST_77538 126135586 4838801 complement(91539..92846) 1 NC_009044.1 go_function: transaminase activity; ornithine aminotransferase 92846 CAR2 4838801 CAR2 Pichia stipitis CBS 6054 ornithine aminotransferase XP_001384317.1 91539 R 322104 CDS PICST_67448 126134902 4838802 93952..94395 1 NC_009044.1 predicted protein 94395 4838802 PICST_67448 Pichia stipitis CBS 6054 predicted protein XP_001383975.1 93952 D 322104 CDS PICST_58113 150864950 4838599 join(95159..96163,96308..96437,96488..96519,96542..96809,96954..97081) 1 NC_009044.1 predicted protein 97081 4838599 PICST_58113 Pichia stipitis CBS 6054 predicted protein XP_001383976.2 95159 D 322104 CDS PICST_31161 150864951 4838600 join(97268..98092,98182..98262) 1 NC_009044.1 predicted protein 98262 4838600 PICST_31161 Pichia stipitis CBS 6054 predicted protein XP_001383977.2 97268 D 322104 CDS PICST_31162 126135588 4838601 complement(98469..99791) 1 NC_009044.1 go_process: amino acid metabolism; predicted protein 99791 4838601 PICST_31162 Pichia stipitis CBS 6054 predicted protein XP_001384318.1 98469 R 322104 CDS PICST_58822 150864952 4838803 join(100994..101388,101611..101920) 1 NC_009044.1 predicted protein 101920 4838803 PICST_58822 Pichia stipitis CBS 6054 predicted protein XP_001383978.2 100994 D 322104 CDS PICST_83587 126135590 4838602 complement(join(102186..103264,103790..104012)) 1 NC_009044.1 ATP-dependent RNA helicase Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1; go_function: nucleic acid binding; helicase activity; ATP binding; Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1 104012 SUB2 4838602 SUB2 Pichia stipitis CBS 6054 Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1 XP_001384319.1 102186 R 322104 CDS PICST_35750 126135592 4838804 complement(105023..105856) 1 NC_009044.1 go_function: pyrroline-5-carboxylate reductase activity; go_process: proline biosynthesis; delta 1-pyrroline-5-carboxylate reductase 105856 PRO3 4838804 PRO3 Pichia stipitis CBS 6054 delta 1-pyrroline-5-carboxylate reductase XP_001384320.1 105023 R 322104 CDS PICST_88926 150864953 4838994 join(107166..109009,109187..109425,109474..109925) 1 NC_009044.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; conserved hypothetical protein DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain 109925 RBP2 4838994 RBP2 Pichia stipitis CBS 6054 conserved hypothetical protein DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain XP_001383979.2 107166 D 322104 CDS PICST_77492 126134912 4838603 join(111111..111226,111742..113137) 1 NC_009044.1 F(1)F(0)-ATPase complex beta subunit, mitochondrial; go_component: proton-transporting two-sector ATPase complex; go_function: ATP binding; hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP biosynthesis; F1F0-ATPase complex, F1 beta subunit 113137 ATP2 4838603 ATP2 Pichia stipitis CBS 6054 F1F0-ATPase complex, F1 beta subunit XP_001383980.1 111111 D 322104 CDS PICST_35752 150864954 4838625 join(113578..113595,113721..115061) 1 NC_009044.1 zinc metallo-protease that catalyzes the first step of N-terminal processing of the yeast a-factor precursor; go_component: membrane; go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; zinc metalloprotease 115061 STE24 4838625 STE24 Pichia stipitis CBS 6054 zinc metalloprotease XP_001383981.2 113578 D 322104 CDS PICST_58709 150865200 4838626 complement(115392..116123) 1 NC_009044.1 has a role in 5' splice site recognition; yeast U1 snRNP protein 116123 LUC7 4838626 LUC7 Pichia stipitis CBS 6054 yeast U1 snRNP protein XP_001384321.2 115392 R 322104 CDS PICST_45392 150864955 4838995 join(116762..117345,117403..118279) 1 NC_009044.1 hypothetical protein 118279 4838995 PICST_45392 Pichia stipitis CBS 6054 hypothetical protein XP_001383982.2 116762 D 322104 CDS PICST_4067 150865201 4838627 complement(join(<118737..119483,119539..119799,119849..>119974)) 1 NC_009044.1 Glycolipid anchored surface protein 4 precursor 119799 GAS4 4838627 GAS4 Pichia stipitis CBS 6054 Glycolipid anchored surface protein 4 precursor XP_001384322.2 <118737 R 322104 CDS PICST_88817 150864956 4838996 120975..122231 1 NC_009044.1 1,4-butanediol diacrylate esterase 122231 BDE99 4838996 BDE99 Pichia stipitis CBS 6054 1,4-butanediol diacrylate esterase XP_001383983.2 120975 D 322104 CDS PICST_31173 126134920 4838628 123964..124368 1 NC_009044.1 hypothetical Glycine-rich cell wall structural protein precursor; Glycine-rich cell wall structural protein precursor 124368 GRP7 4838628 GRP7 Pichia stipitis CBS 6054 Glycine-rich cell wall structural protein precursor XP_001383984.1 123964 D 322104 CDS PICST_72031 150864957 4838629 125197..127740 1 NC_009044.1 go_function: peptidase activity; go_process: proteolysis and peptidolysis; glutamated carboxypeptidase 127740 GCP1 4838629 GCP1 Pichia stipitis CBS 6054 glutamated carboxypeptidase XP_001383985.2 125197 D 322104 CDS PICST_27149 150865202 4839039 complement(join(<128588..129004,129038..>129322)) 1 NC_009044.1 conserved hypothetical protein 129004 4839039 PICST_27149 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384323.2 <128588 R 322104 CDS PICST_72144 150865203 4838997 complement(129585..130634) 1 NC_009044.1 predicted protein 130634 4838997 PICST_72144 Pichia stipitis CBS 6054 predicted protein XP_001384324.2 129585 R 322104 CDS PICST_83480 126135602 4838998 complement(join(130924..131060,131232..131966,132009..132094,132119..132125,132198..132273,132292..133734,134283..134303)) 1 NC_009044.1 go_component: integral to membrane; go_function: solute:hydrogen antiporter activity; go_process: regulation of pH; Na+/H+ antiporter 134303 CNH1 4838998 CNH1 Pichia stipitis CBS 6054 Na+/H+ antiporter XP_001384325.1 130924 R 322104 CDS PICST_71868 150865204 4838999 complement(138138..139193) 1 NC_009044.1 go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar ATPase V0 domain subunit d (36 kDa) 139193 VMA6 4838999 VMA6 Pichia stipitis CBS 6054 vacuolar ATPase V0 domain subunit d (36 kDa) XP_001384326.2 138138 R 322104 CDS PICST_58899 150864958 4838577 join(139742..140511,140527..140888,140904..141109) 1 NC_009044.1 predicted protein 141109 4838577 PICST_58899 Pichia stipitis CBS 6054 predicted protein XP_001383986.2 139742 D 322104 CDS PICST_59609 150865205 4839040 complement(join(141241..142150,142274..>143511)) 1 NC_009044.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; SNF2 family DNA-dependent ATPase 142150 RIS1 4839040 RIS1 Pichia stipitis CBS 6054 SNF2 family DNA-dependent ATPase XP_001384327.2 141241 R 322104 CDS PICST_71939 126135608 4838578 complement(145626..146243) 1 NC_009044.1 predicted protein 146243 4838578 PICST_71939 Pichia stipitis CBS 6054 predicted protein XP_001384328.1 145626 R 322104 CDS PICST_31183 150864959 4838579 146587..147708 1 NC_009044.1 predicted protein 147708 4838579 PICST_31183 Pichia stipitis CBS 6054 predicted protein XP_001383987.2 146587 D 322104 CDS PICST_44612 126134928 4839041 148062..149267 1 NC_009044.1 go_function: transaminase activity; go_process: biosynthesis; histidinol-phosphate aminotransferase 149267 HIS5 4839041 HIS5 Pichia stipitis CBS 6054 histidinol-phosphate aminotransferase XP_001383988.1 148062 D 322104 CDS PICST_45787 126134930 4839042 149677..150396 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 150396 4839042 PICST_45787 Pichia stipitis CBS 6054 predicted protein XP_001383989.1 149677 D 322104 CDS PICST_31186 150864960 4839043 151157..153259 1 NC_009044.1 go_component: membrane; go_function: ion channel activity; go_process: ion transport; outward-rectifier potassium channel 153259 TOK1 4839043 TOK1 Pichia stipitis CBS 6054 outward-rectifier potassium channel XP_001383990.2 151157 D 322104 CDS PICST_59290 150864961 4839044 153990..155372 1 NC_009044.1 go_component: membrane; go_function: nucleoside transporter activity; go_process: transport; predicted protein 155372 4839044 PICST_59290 Pichia stipitis CBS 6054 predicted protein XP_001383991.2 153990 D 322104 CDS PICST_31188 150864962 4838630 155750..159415 1 NC_009044.1 predicted protein 159415 4838630 PICST_31188 Pichia stipitis CBS 6054 predicted protein XP_001383992.2 155750 D 322104 CDS PICST_83454 150864963 4838631 join(159885..160194,160303..161675) 1 NC_009044.1 predicted protein 161675 4838631 PICST_83454 Pichia stipitis CBS 6054 predicted protein XP_001383993.2 159885 D 322104 CDS PICST_31190 150864964 4838632 join(162004..162080,162245..163109) 1 NC_009044.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 163109 4838632 PICST_31190 Pichia stipitis CBS 6054 predicted protein XP_001383994.2 162004 D 322104 CDS PICST_72181 150865206 4838633 complement(join(163226..163715,164102..164130)) 1 NC_009044.1 predicted protein 164130 4838633 PICST_72181 Pichia stipitis CBS 6054 predicted protein XP_001384329.2 163226 R 322104 CDS PICST_77444 150864965 4838580 join(164572..164923,164966..166500) 1 NC_009044.1 predicted protein 166500 4838580 PICST_77444 Pichia stipitis CBS 6054 predicted protein XP_001383995.2 164572 D 322104 CDS PICST_11329 150865207 4838634 complement(join(<166821..167043,167245..>168398)) 1 NC_009044.1 go_component: membrane; go_process: transport; methionine permease 167043 MUP2 4838634 MUP2 Pichia stipitis CBS 6054 methionine permease XP_001384330.2 <166821 R 322104 CDS PICST_83142 150865208 4838581 complement(join(168962..170006,170061..170284)) 1 NC_009044.1 weak similarity to acid phosphatase; acid phosphatase-like protein 170284 PHO3.3 4838581 PHO3.3 Pichia stipitis CBS 6054 acid phosphatase-like protein XP_001384331.2 168962 R 322104 CDS PICST_59604 150865209 4838582 complement(join(172278..175034,175059..175460)) 1 NC_009044.1 go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; predicted protein 175460 4838582 PICST_59604 Pichia stipitis CBS 6054 predicted protein XP_001384332.2 172278 R 322104 CDS PICST_67464 150864966 4838583 180263..183172 1 NC_009044.1 Ca2+-modulated nonselective cation channel polycystin 183172 RBT1.2 4838583 RBT1.2 Pichia stipitis CBS 6054 Ca2+-modulated nonselective cation channel polycystin XP_001383996.2 180263 D 322104 CDS PICST_59052 150865210 4838635 complement(183434..184765) 1 NC_009044.1 predicted protein 184765 4838635 PICST_59052 Pichia stipitis CBS 6054 predicted protein XP_001384333.2 183434 R 322104 CDS PICST_31198 150865211 4838391 complement(185211..186638) 1 NC_009044.1 go_function: nucleotidyltransferase activity; go_process: biosynthesis; phosphorylcholine transferase 186638 PCT1 4838391 PCT1 Pichia stipitis CBS 6054 phosphorylcholine transferase XP_001384334.2 185211 R 322104 CDS PICST_59387 126134946 4838392 187563..188009 1 NC_009044.1 predicted protein 188009 4838392 PICST_59387 Pichia stipitis CBS 6054 predicted protein XP_001383997.1 187563 D 322104 CDS PICST_31200 150865212 4838636 complement(188491..190617) 1 NC_009044.1 go_function: phospholipid binding; predicted protein 190617 4838636 PICST_31200 Pichia stipitis CBS 6054 predicted protein XP_001384335.2 188491 R 322104 CDS PICST_45043 126135624 4838393 complement(191639..192100) 1 NC_009044.1 predicted protein 192100 4838393 PICST_45043 Pichia stipitis CBS 6054 predicted protein XP_001384336.1 191639 R 322104 CDS PICST_59191 126134948 4838394 193813..194409 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 194409 4838394 PICST_59191 Pichia stipitis CBS 6054 predicted protein XP_001383998.1 193813 D 322104 CDS PICST_83187 150865213 4838637 complement(join(194589..195870,195925..197173,197228..197630)) 1 NC_009044.1 go_component: intracellular; go_function: ubiquitin-protein ligase activity; go_process: protein modification; ubiquitin cycle; ubiquitin-protein ligase (E3) 197630 HUL5 4838637 HUL5 Pichia stipitis CBS 6054 ubiquitin-protein ligase (E3) XP_001384337.2 194589 R 322104 CDS PICST_59523 150865214 4838395 complement(198027..198989) 1 NC_009044.1 go_function: catalytic activity; go_process: metabolism; p-Nitrophenyl phosphatase 198989 PHO14 4838395 PHO14 Pichia stipitis CBS 6054 p-Nitrophenyl phosphatase XP_001384338.2 198027 R 322104 CDS PICST_10596 126135630 4838396 complement(join(<199360..199566,199627..>201111)) 1 NC_009044.1 predicted protein 199566 4838396 PICST_10596 Pichia stipitis CBS 6054 predicted protein XP_001384339.1 <199360 R 322104 CDS PICST_31206 126135632 4838397 complement(202427..202780) 1 NC_009044.1 predicted protein 202780 4838397 PICST_31206 Pichia stipitis CBS 6054 predicted protein XP_001384340.1 202427 R 322104 CDS PICST_31207 150864967 4838398 203179..203631 1 NC_009044.1 predicted protein 203631 4838398 PICST_31207 Pichia stipitis CBS 6054 predicted protein XP_001383999.2 203179 D 322104 CDS PICST_31208 150865215 4838638 complement(204112..204738) 1 NC_009044.1 predicted protein 204738 4838638 PICST_31208 Pichia stipitis CBS 6054 predicted protein XP_001384341.2 204112 R 322104 CDS PICST_67467 150864968 4838399 208884..210392 1 NC_009044.1 fungal Zn(2)-Cys(6) binuclear cluster domain DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; DNA-binding proteins Bright/BRCAA1/RBP1 210392 NAF2.1 4838399 NAF2.1 Pichia stipitis CBS 6054 DNA-binding proteins Bright/BRCAA1/RBP1 XP_001384000.2 208884 D 322104 CDS PICST_59087 126135636 4838639 complement(210845..211432) 1 NC_009044.1 go_function: translation initiation factor activity; go_process: translational initiation; predicted protein 211432 4838639 PICST_59087 Pichia stipitis CBS 6054 predicted protein XP_001384342.1 210845 R 322104 CDS PICST_59158 150865216 4838400 complement(join(211706..212286,212330..212347,212431..212505,212554..212928,212995..214768)) 1 NC_009044.1 predicted protein 214768 4838400 PICST_59158 Pichia stipitis CBS 6054 predicted protein XP_001384343.2 211706 R 322104 CDS PICST_89086 150865217 4838401 complement(join(215628..215788,215882..216578,216744..218096)) 1 NC_009044.1 go_function: ATP binding; go_process: mismatch repair; predicted protein 218096 4838401 PICST_89086 Pichia stipitis CBS 6054 predicted protein XP_001384344.2 215628 R 322104 CDS PICST_83402 150864969 4838402 join(218859..219435,219496..>220130) 1 NC_009044.1 predicted protein 219435 4838402 PICST_83402 Pichia stipitis CBS 6054 predicted protein XP_001384001.2 218859 D 322104 CDS PICST_31214 150865218 4838640 complement(join(220450..221657,221698..221771,221906..222009)) 1 NC_009044.1 go_function: O-sialoglycoprotein endopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 222009 4838640 PICST_31214 Pichia stipitis CBS 6054 predicted protein XP_001384345.2 220450 R 322104 CDS PICST_77600 150864970 4839012 222714..223808 1 NC_009044.1 go_component: membrane; go_function: binding; go_process: transport; predicted protein 223808 4839012 PICST_77600 Pichia stipitis CBS 6054 predicted protein XP_001384002.2 222714 D 322104 CDS PICST_45705 126134958 4838641 224769..225647 1 NC_009044.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 225647 4838641 PICST_45705 Pichia stipitis CBS 6054 predicted protein XP_001384003.1 224769 D 322104 CDS PICST_83452 126134960 4838642 join(226615..226796,226824..227853) 1 NC_009044.1 go_function: caspase activity; go_process: proteolysis and peptidolysis; predicted protein 227853 4838642 PICST_83452 Pichia stipitis CBS 6054 predicted protein XP_001384004.1 226615 D 322104 CDS PICST_77757 150864971 4838643 join(228692..228958,229094..231415) 1 NC_009044.1 Dentin sialophosphoprotein precursor 231415 DSP7 4838643 DSP7 Pichia stipitis CBS 6054 Dentin sialophosphoprotein precursor XP_001384005.2 228692 D 322104 CDS PICST_59048 150864972 4838644 232147..234000 1 NC_009044.1 go_function: catalytic activity; nutrient reservoir activity; predicted protein 234000 4838644 PICST_59048 Pichia stipitis CBS 6054 predicted protein XP_001384006.2 232147 D 322104 CDS PICST_31220 150865219 4838645 complement(234029..234862) 1 NC_009044.1 predicted protein 234862 4838645 PICST_31220 Pichia stipitis CBS 6054 predicted protein XP_001384346.2 234029 R 322104 CDS PICST_31221 150864973 4839013 237762..239441 1 NC_009044.1 go_function: RNA binding; go_process: RNA processing; predicted protein 239441 4839013 PICST_31221 Pichia stipitis CBS 6054 predicted protein XP_001384007.2 237762 D 322104 CDS PICST_89141 150864974 4838646 239973..244688 1 NC_009044.1 go_component: cytoplasm; go_function: shikimate kinase activity; ATP binding; 3-dehydroquinate dehydratase activity; shikimate 5-dehydrogenase activity; 3-dehydroquinate synthase activity; go_process: amino acid biosynthesis; aromatic amino acid family biosynthesis; aromatic amino acid family biosynthesis, shikimate pathway; predicted protein 244688 4838646 PICST_89141 Pichia stipitis CBS 6054 predicted protein XP_001384008.2 239973 D 322104 CDS PICST_31223 150864975 4838916 246344..247468 1 NC_009044.1 predicted protein 247468 4838916 PICST_31223 Pichia stipitis CBS 6054 predicted protein XP_001384009.2 246344 D 322104 CDS PICST_71553 150865220 4838917 complement(247847..262786) 1 NC_009044.1 predicted protein 262786 4838917 PICST_71553 Pichia stipitis CBS 6054 predicted protein XP_001384347.2 247847 R 322104 CDS PICST_31226 126135648 4839014 complement(263913..264284) 1 NC_009044.1 predicted protein 264284 4839014 PICST_31226 Pichia stipitis CBS 6054 predicted protein XP_001384348.1 263913 R 322104 CDS PICST_45900 126134972 4839015 265818..267038 1 NC_009044.1 go_component: integral to membrane; longevity-assurance protein Acyl-CoA-dependent ceramide synthase 267038 LAG1.3 4839015 LAG1.3 Pichia stipitis CBS 6054 longevity-assurance protein Acyl-CoA-dependent ceramide synthase XP_001384010.1 265818 D 322104 CDS PICST_35784 150864976 4838918 267687..268139 1 NC_009044.1 predicted protein 268139 4838918 PICST_35784 Pichia stipitis CBS 6054 predicted protein XP_001384011.2 267687 D 322104 CDS PICST_45361 150865221 4838919 complement(268503..>269189) 1 NC_009044.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein of the rho family >269189 RHO3 4838919 RHO3 Pichia stipitis CBS 6054 GTP-binding protein of the rho family XP_001384349.2 268503 R 322104 CDS PICST_31230 150865222 4839016 complement(270346..271155) 1 NC_009044.1 predicted protein 271155 4839016 PICST_31230 Pichia stipitis CBS 6054 predicted protein XP_001384350.2 270346 R 322104 CDS PICST_44751 150865223 4839017 complement(272331..273791) 1 NC_009044.1 alphaN-acetylglucosamine transferase 273791 GNT1 4839017 GNT1 Pichia stipitis CBS 6054 alphaN-acetylglucosamine transferase XP_001384351.2 272331 R 322104 CDS PICST_31232 150864977 4839018 274299..275249 1 NC_009044.1 hypothetical ORF; repeated; hypothetical repeated ORF 275249 4839018 PICST_31232 Pichia stipitis CBS 6054 hypothetical repeated ORF XP_001384012.2 274299 D 322104 CDS PICST_58253 150864978 4838920 join(287292..289940,290028..291907,292079..>292271) 1 NC_009044.1 Required for LacZ RNA expression from certain plasmids; suppressor of the Transcriptional (T) defect of Hpr1 (H) by Overexpression (O); plays a role in transcription elongation by RNA polymerase II; plays a role in transcriptional elongation; RLR1 (THO2) 291907 RLR1 4838920 RLR1 Pichia stipitis CBS 6054 RLR1 (THO2) XP_001384013.2 287292 D 322104 CDS PICST_31236 150865224 4838921 complement(292394..293743) 1 NC_009044.1 transcription initiation factor TFIIIA; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; Strongly-conserved Zn-finger binding protein (TFIIIA) 293743 PZF1 4838921 PZF1 Pichia stipitis CBS 6054 Strongly-conserved Zn-finger binding protein (TFIIIA) XP_001384352.2 292394 R 322104 CDS PICST_31237 126135658 4839019 complement(294269..294697) 1 NC_009044.1 predicted protein 294697 4839019 PICST_31237 Pichia stipitis CBS 6054 predicted protein XP_001384353.1 294269 R 322104 CDS PICST_59269 126135660 4838584 complement(295625..296959) 1 NC_009044.1 predicted protein 296959 4838584 PICST_59269 Pichia stipitis CBS 6054 predicted protein XP_001384354.1 295625 R 322104 CDS PICST_31239 126135662 4838585 complement(297600..299123) 1 NC_009044.1 predicted protein 299123 4838585 PICST_31239 Pichia stipitis CBS 6054 predicted protein XP_001384355.1 297600 R 322104 CDS PICST_59246 126134980 4838586 join(<301495..302329,302387..302751) 1 NC_009044.1 predicted protein 302751 4838586 PICST_59246 Pichia stipitis CBS 6054 predicted protein XP_001384014.1 <301495 D 322104 CDS PICST_45215 150865225 4838922 complement(join(303008..304343,304398..304432)) 1 NC_009044.1 predicted protein 304432 4838922 PICST_45215 Pichia stipitis CBS 6054 predicted protein XP_001384356.2 303008 R 322104 CDS PICST_31242 150865226 4838587 complement(305205..306476) 1 NC_009044.1 go_function: RNA binding; RNA methyltransferase activity; go_process: RNA processing; predicted protein 306476 4838587 PICST_31242 Pichia stipitis CBS 6054 predicted protein XP_001384357.2 305205 R 322104 CDS PICST_45177 150864979 4838588 308343..309752 1 NC_009044.1 predicted protein 309752 4838588 PICST_45177 Pichia stipitis CBS 6054 predicted protein XP_001384015.2 308343 D 322104 CDS PICST_67479 150864980 4838923 310007..311089 1 NC_009044.1 mitochondrial ribosome small subunit component 311089 MRP51 4838923 MRP51 Pichia stipitis CBS 6054 mitochondrial ribosome small subunit component XP_001384016.2 310007 D 322104 CDS PICST_31247 150865227 4838924 complement(<311324..313845) 1 NC_009044.1 predicted protein 313845 4838924 PICST_31247 Pichia stipitis CBS 6054 predicted protein XP_001384358.2 <311324 R 322104 CDS PICST_83286 150865228 4838589 complement(join(314214..314392,314408..314526,314677..315240,315373..315781,315797..316946)) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 316946 4838589 PICST_83286 Pichia stipitis CBS 6054 predicted protein XP_001384359.2 314214 R 322104 CDS PICST_26156 150865229 4838590 complement(join(<317830..317875,318065..318600,318624..318640,318702..>319281)) 1 NC_009044.1 predicted protein 318640 4838590 PICST_26156 Pichia stipitis CBS 6054 predicted protein XP_001384360.2 <317830 R 322104 CDS PICST_59600 126134986 4838945 320807..321616 1 NC_009044.1 predicted protein 321616 4838945 PICST_59600 Pichia stipitis CBS 6054 predicted protein XP_001384017.1 320807 D 322104 CDS PICST_35799 150865230 4838694 complement(321843..322661) 1 NC_009044.1 go_component: membrane; go_function: molecular function unknown; predicted protein 322661 4838694 PICST_35799 Pichia stipitis CBS 6054 predicted protein XP_001384361.2 321843 R 322104 CDS PICST_35800 126135676 4838946 complement(324323..325117) 1 NC_009044.1 go_component: membrane; go_function: molecular function unknown; predicted protein 325117 4838946 PICST_35800 Pichia stipitis CBS 6054 predicted protein XP_001384362.1 324323 R 322104 CDS PICST_31253 150865231 4838947 complement(326005..326805) 1 NC_009044.1 go_component: membrane; go_function: molecular function unknown; predicted protein 326805 4838947 PICST_31253 Pichia stipitis CBS 6054 predicted protein XP_001384363.2 326005 R 322104 CDS PICST_31254 150865232 4838948 complement(328149..329852) 1 NC_009044.1 predicted protein 329852 4838948 PICST_31254 Pichia stipitis CBS 6054 predicted protein XP_001384364.2 328149 R 322104 CDS PICST_71938 126135682 4838949 complement(331039..331647) 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 331647 4838949 PICST_71938 Pichia stipitis CBS 6054 predicted protein XP_001384365.1 331039 R 322104 CDS PICST_45461 126134988 4838950 332775..332993 1 NC_009044.1 predicted protein 332993 4838950 PICST_45461 Pichia stipitis CBS 6054 predicted protein XP_001384018.1 332775 D 322104 CDS PICST_67483 150864981 4838695 337710..339683 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; predicted protein 339683 4838695 PICST_67483 Pichia stipitis CBS 6054 predicted protein XP_001384019.2 337710 D 322104 CDS PICST_89002 150864982 4838696 340514..343426 1 NC_009044.1 predicted protein 343426 4838696 PICST_89002 Pichia stipitis CBS 6054 predicted protein XP_001384020.2 340514 D 322104 CDS PICST_58181 150864983 4838697 344624..346885 1 NC_009044.1 go_function: catalytic activity; go_process: metabolism; long-chain fatty acid CoA ligase 346885 FAA25 4838697 FAA25 Pichia stipitis CBS 6054 long-chain fatty acid CoA ligase XP_001384021.2 344624 D 322104 CDS PICST_44393 150864984 4838698 join(<348036..349499,349554..>349922) 1 NC_009044.1 predicted protein 349499 4838698 PICST_44393 Pichia stipitis CBS 6054 predicted protein XP_001384022.2 <348036 D 322104 CDS PICST_31261 150865233 4838699 complement(350827..351714) 1 NC_009044.1 go_component: tRNA-intron endonuclease complex; go_function: tRNA-intron endonuclease activity; go_process: tRNA splicing; predicted protein 351714 4838699 PICST_31261 Pichia stipitis CBS 6054 predicted protein XP_001384366.2 350827 R 322104 CDS PICST_77434 126135686 4838981 complement(352300..354084) 1 NC_009044.1 go_component: membrane; go_function: nucleoside:sodium symporter activity; go_process: transport; concentrative Na+-nucleoside cotransporte 354084 NNT1 4838981 NNT1 Pichia stipitis CBS 6054 concentrative Na+-nucleoside cotransporte XP_001384367.1 352300 R 322104 CDS PICST_45331 150865234 4838982 complement(join(355617..356203,356252..357441,357541..357778,357890..361421)) 1 NC_009044.1 predicted protein 361421 4838982 PICST_45331 Pichia stipitis CBS 6054 predicted protein XP_001384368.2 355617 R 322104 CDS PICST_31264 150865235 4838983 complement(join(362114..362197,362261..362309,362532..363688)) 1 NC_009044.1 predicted protein 363688 4838983 PICST_31264 Pichia stipitis CBS 6054 predicted protein XP_001384369.2 362114 R 322104 CDS PICST_89284 150864985 4838984 join(364678..365259,365368..365829) 1 NC_009044.1 predicted protein 365829 4838984 PICST_89284 Pichia stipitis CBS 6054 predicted protein XP_001384023.2 364678 D 322104 CDS PICST_44446 150864986 4838700 366619..367623 1 NC_009044.1 predicted protein 367623 4838700 PICST_44446 Pichia stipitis CBS 6054 predicted protein XP_001384024.2 366619 D 322104 CDS PICST_31267 150864987 4838812 368804..369868 1 NC_009044.1 go_function: acyl-CoA thioesterase activity; go_process: acyl-CoA metabolism; predicted protein 369868 4838812 PICST_31267 Pichia stipitis CBS 6054 predicted protein XP_001384025.2 368804 D 322104 CDS PICST_44479 150864988 4838813 join(371123..371522,371628..372199) 1 NC_009044.1 go_function: acyl-CoA thioesterase activity; go_process: acyl-CoA metabolism; predicted protein 372199 4838813 PICST_44479 Pichia stipitis CBS 6054 predicted protein XP_001384026.2 371123 D 322104 CDS PICST_59543 150864989 4838814 372621..374744 1 NC_009044.1 vacuolar sorting protein essential for vacuolar morphogenesis and function; go_function: protein transporter activity; go_process: protein secretion; Vacuolar sorting protein VPS33/slp1 (Sec1 family) 374744 VSP33 4838814 VSP33 Pichia stipitis CBS 6054 Vacuolar sorting protein VPS33/slp1 (Sec1 family) XP_001384027.2 372621 D 322104 CDS PICST_31270 150865236 4838815 complement(376347..378185) 1 NC_009044.1 pre-mRNA cleavage and polyadenylation factor I component 378185 PCF11 4838815 PCF11 Pichia stipitis CBS 6054 pre-mRNA cleavage and polyadenylation factor I component XP_001384370.2 376347 R 322104 CDS PICST_72104 126135008 4838985 379410..380714 1 NC_009044.1 go_function: oxidoreductase activity; go_process: metabolism; Isocitrate dehydrogenase [NADP], mitochondrial precursor (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (CtIDP1) 380714 IDP1 4838985 IDP1 Pichia stipitis CBS 6054 Isocitrate dehydrogenase [NADP], mitochondrial precursor (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (CtIDP1) XP_001384028.1 379410 D 322104 CDS PICST_45600 150864990 4838816 388653..391052 1 NC_009044.1 predicted protein 391052 4838816 PICST_45600 Pichia stipitis CBS 6054 predicted protein XP_001384029.2 388653 D 322104 CDS PICST_35812 126135694 4838817 complement(391143..392408) 1 NC_009044.1 predicted protein 392408 4838817 PICST_35812 Pichia stipitis CBS 6054 predicted protein XP_001384371.1 391143 R 322104 CDS PICST_58961 150864991 4838986 join(392645..392983,393035..394204) 1 NC_009044.1 predicted protein 394204 4838986 PICST_58961 Pichia stipitis CBS 6054 predicted protein XP_001384030.2 392645 D 322104 CDS PICST_59330 150865237 4838818 complement(394256..395629) 1 NC_009044.1 predicted protein 395629 4838818 PICST_59330 Pichia stipitis CBS 6054 predicted protein XP_001384372.2 394256 R 322104 CDS PICST_67489 150865238 4838987 complement(396289..397914) 1 NC_009044.1 predicted protein 397914 4838987 PICST_67489 Pichia stipitis CBS 6054 predicted protein XP_001384373.2 396289 R 322104 CDS PICST_89292 150864992 4838377 400846..402132 1 NC_009044.1 predicted protein 402132 4838377 PICST_89292 Pichia stipitis CBS 6054 predicted protein XP_001384031.2 400846 D 322104 CDS PICST_72018 126135016 4838819 join(402478..402531,402787..>403104) 1 NC_009044.1 phosphopantothenoylcysteine decarboxylase 402531 PCD1.2 4838819 PCD1.2 Pichia stipitis CBS 6054 phosphopantothenoylcysteine decarboxylase XP_001384032.1 402478 D 322104 CDS PICST_35815 150864993 4838820 403279..405573 1 NC_009044.1 go_component: intracellular; predicted protein 405573 4838820 PICST_35815 Pichia stipitis CBS 6054 predicted protein XP_001384033.2 403279 D 322104 CDS PICST_35816 150864994 4838821 join(406747..406833,407260..407340,407372..407373,407610..408567) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 408567 4838821 PICST_35816 Pichia stipitis CBS 6054 predicted protein XP_001384034.2 406747 D 322104 CDS PICST_77954 126135022 4838822 409071..409403 1 NC_009044.1 predicted protein 409403 4838822 PICST_77954 Pichia stipitis CBS 6054 predicted protein XP_001384035.1 409071 D 322104 CDS PICST_83183 126135700 4838823 complement(join(409839..410926,410954..411098)) 1 NC_009044.1 predicted protein 411098 4838823 PICST_83183 Pichia stipitis CBS 6054 predicted protein XP_001384374.1 409839 R 322104 CDS PICST_31282 150865239 4838378 complement(411427..412974) 1 NC_009044.1 predicted protein 412974 4838378 PICST_31282 Pichia stipitis CBS 6054 predicted protein XP_001384375.2 411427 R 322104 CDS PICST_88869 150864995 4838379 413786..415288 1 NC_009044.1 predicted protein 415288 4838379 PICST_88869 Pichia stipitis CBS 6054 predicted protein XP_001384036.2 413786 D 322104 CDS PICST_72098 150864996 4838824 416095..417372 1 NC_009044.1 go_process: steroid metabolism; predicted protein 417372 4838824 PICST_72098 Pichia stipitis CBS 6054 predicted protein XP_001384037.2 416095 D 322104 CDS PICST_83602 126135028 4838825 join(418075..418093,418675..418979) 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 418979 4838825 PICST_83602 Pichia stipitis CBS 6054 predicted protein XP_001384038.1 418075 D 322104 CDS PICST_45689 150865240 4838951 complement(419361..>420797) 1 NC_009044.1 fumarate reductase flavoprotein subunit [EC:1.3.99.1] (FRD1) (NADH-dependent fumarate reductase) (FAD-dependent oxidoreductase FRDS) [KO:K00238]; go_function: oxidoreductase activity; go_process: electron transport; fumarate reductase flavoprotein subunit >420797 OSM1 4838951 OSM1 Pichia stipitis CBS 6054 fumarate reductase flavoprotein subunit XP_001384376.2 419361 R 322104 CDS PICST_27265 150864997 4838380 join(421636..422190,422248..>422268) 1 NC_009044.1 go_function: nucleic acid binding; predicted protein 422190 4838380 PICST_27265 Pichia stipitis CBS 6054 predicted protein XP_001384039.2 421636 D 322104 CDS PICST_58131 150865241 4838952 complement(422462..425089) 1 NC_009044.1 predicted protein 425089 4838952 PICST_58131 Pichia stipitis CBS 6054 predicted protein XP_001384377.2 422462 R 322104 CDS PICST_58854 150865242 4838381 complement(join(425674..427102,427139..427218)) 1 NC_009044.1 go_function: cysteine-type endopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 427218 4838381 PICST_58854 Pichia stipitis CBS 6054 predicted protein XP_001384378.2 425674 R 322104 CDS PICST_59685 126135710 4838382 complement(join(428254..429746,429798..429918)) 1 NC_009044.1 Synaptic vesicle transporter SVOP (MDR1); multidrug resistance 429918 MDR11 4838382 MDR11 Pichia stipitis CBS 6054 multidrug resistance XP_001384379.1 428254 R 322104 CDS PICST_59522 150865243 4838383 complement(join(431039..432198,432259..432442)) 1 NC_009044.1 predicted protein 432442 4838383 PICST_59522 Pichia stipitis CBS 6054 predicted protein XP_001384380.2 431039 R 322104 CDS PICST_59372 126135032 4838680 <434301..435350 1 NC_009044.1 regulator of phospholipid metabolism 435350 DEP1 4838680 DEP1 Pichia stipitis CBS 6054 regulator of phospholipid metabolism XP_001384040.1 <434301 D 322104 CDS PICST_88854 150864998 4838953 435843..>436619 1 NC_009044.1 chitin biosynthesis protein Involved in chitin synthase III activity, also required for homozygosis in the first stages of mating (Yong-Su Jin[2006-01-06 09:35:48]); go_component: intracellular; Chitin biosynthesis protein CHS5 (CAL3 protein) >436619 CHS5 4838953 CHS5 Pichia stipitis CBS 6054 Chitin biosynthesis protein CHS5 (CAL3 protein) XP_001384041.2 435843 D 322104 CDS PICST_35827 150865244 4838954 complement(437626..437982) 1 NC_009044.1 go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar H-ATPase 14 kDa subunit (subunit F) of the catalytic (V1) sector 437982 VMA7 4838954 VMA7 Pichia stipitis CBS 6054 vacuolar H-ATPase 14 kDa subunit (subunit F) of the catalytic (V1) sector XP_001384381.2 437626 R 322104 CDS PICST_59132 150864999 4838681 438440..439285 1 NC_009044.1 predicted protein 439285 4838681 PICST_59132 Pichia stipitis CBS 6054 predicted protein XP_001384042.2 438440 D 322104 CDS PICST_31296 126135716 4838955 complement(440495..441469) 1 NC_009044.1 calcium-binding mitochondrial carrier mitochondrial ADP/ATP carrier protein; go_component: membrane; go_function: binding; go_process: transport; mitochondrial ADP/ATP carrier protein 441469 CMC3 4838955 CMC3 Pichia stipitis CBS 6054 mitochondrial ADP/ATP carrier protein XP_001384382.1 440495 R 322104 CDS PICST_71636 150865000 4838682 442500..445046 1 NC_009044.1 DNA replication licensing factor MCM3 (Minichromosome maintenance protein 3); go_function: DNA binding; ATP binding; DNA-dependent ATPase activity; go_process: DNA replication initiation; member of complex that acts at ARS's to initiate replication 445046 MCM3 4838682 MCM3 Pichia stipitis CBS 6054 member of complex that acts at ARS's to initiate replication XP_001384043.2 442500 D 322104 CDS PICST_58562 150865001 4838956 <445622..446461 1 NC_009044.1 predicted protein 446461 4838956 PICST_58562 Pichia stipitis CBS 6054 predicted protein XP_001384044.2 <445622 D 322104 CDS PICST_59036 150865002 4838867 join(<446833..447381,447457..447780) 1 NC_009044.1 predicted protein 447780 4838867 PICST_59036 Pichia stipitis CBS 6054 predicted protein XP_001384045.2 <446833 D 322104 CDS PICST_44816 150865003 4838868 448779..449675 1 NC_009044.1 NADH-cytochrome b-5 reductase (MCR1); go_function: oxidoreductase activity; go_process: electron transport; NADH-cytochrome b-5 reductase 449675 CBR2 4838868 CBR2 Pichia stipitis CBS 6054 NADH-cytochrome b-5 reductase XP_001384046.2 448779 D 322104 CDS PICST_45555 150865004 4838869 449915..451345 1 NC_009044.1 go_function: hydrolase activity; predicted protein 451345 4838869 PICST_45555 Pichia stipitis CBS 6054 predicted protein XP_001384047.2 449915 D 322104 CDS PICST_65547 150865005 4838870 join(452637..454322,454371..455078) 1 NC_009044.1 predicted protein 455078 4838870 PICST_65547 Pichia stipitis CBS 6054 predicted protein XP_001384048.2 452637 D 322104 CDS PICST_89371 126135718 4838871 complement(join(455461..455832,456303..456344)) 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 456344 4838871 PICST_89371 Pichia stipitis CBS 6054 predicted protein XP_001384383.1 455461 R 322104 CDS PICST_88820 150865006 4838683 457481..459127 1 NC_009044.1 go_function: amidase activity; Acetamidase 459127 AMD3 4838683 AMD3 Pichia stipitis CBS 6054 Acetamidase XP_001384049.2 457481 D 322104 CDS PICST_35835 150865007 4838872 join(461094..462408,463103..463176) 1 NC_009044.1 Pantothenate transporter FEN2 (Fenpropimorph resistance protein 2) 463176 FEN3 4838872 FEN3 Pichia stipitis CBS 6054 Pantothenate transporter FEN2 (Fenpropimorph resistance protein 2) XP_001384050.2 461094 D 322104 CDS PICST_67502 150865245 4838873 complement(463952..465223) 1 NC_009044.1 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain 465223 WSC1 4838873 WSC1 Pichia stipitis CBS 6054 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain XP_001384384.2 463952 R 322104 CDS PICST_31306 150865008 4838684 468481..469299 1 NC_009044.1 predicted protein 469299 4838684 PICST_31306 Pichia stipitis CBS 6054 predicted protein XP_001384051.2 468481 D 322104 CDS PICST_67503 150865246 4839052 complement(469928..471787) 1 NC_009044.1 predicted protein 471787 4839052 PICST_67503 Pichia stipitis CBS 6054 predicted protein XP_001384385.2 469928 R 322104 CDS PICST_31308 150865247 4838685 complement(473726..475354) 1 NC_009044.1 predicted protein 475354 4838685 PICST_31308 Pichia stipitis CBS 6054 predicted protein XP_001384386.2 473726 R 322104 CDS PICST_59212 150865248 4838569 complement(join(475795..483593,483615..484530)) 1 NC_009044.1 involved in telomere length regulation; go_function: phosphotransferase activity, alcohol group as acceptor; phosphatidylinositol kinase 484530 TEL1 4838569 TEL1 Pichia stipitis CBS 6054 phosphatidylinositol kinase XP_001384387.2 475795 R 322104 CDS PICST_83560 126135056 4838570 486175..487356 1 NC_009044.1 Aminomethyl transferase Required for metabolizing glycine as a nitrogen source; go_function: aminomethyltransferase activity; Aminomethyl transferase 487356 GCV1 4838570 GCV1 Pichia stipitis CBS 6054 Aminomethyl transferase XP_001384052.1 486175 D 322104 CDS PICST_31311 150865009 4839053 489085..489798 1 NC_009044.1 predicted protein 489798 4839053 PICST_31311 Pichia stipitis CBS 6054 predicted protein XP_001384053.2 489085 D 322104 CDS PICST_31312 126135728 4839054 complement(490204..491319) 1 NC_009044.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; NAD/NADP dependent alcohol dehydrogenase 491319 ADH5 4839054 ADH5 Pichia stipitis CBS 6054 NAD/NADP dependent alcohol dehydrogenase XP_001384388.1 490204 R 322104 CDS PICST_58159 126135730 4838571 complement(492410..494356) 1 NC_009044.1 part of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in protein targeting to the endoplasmic reticulum (ER) membrane; part of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex 494356 SRP72 4838571 SRP72 Pichia stipitis CBS 6054 part of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex XP_001384389.1 492410 R 322104 CDS PICST_44456 126135060 4838572 495450..496670 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; NADPH dehydrogenase 496670 OYE2.5 4838572 OYE2.5 Pichia stipitis CBS 6054 NADPH dehydrogenase XP_001384054.1 495450 D 322104 CDS PICST_44614 126135062 4839055 497640..498863 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; NADPH dehydrogenase 498863 OYE2.6 4839055 OYE2.6 Pichia stipitis CBS 6054 NADPH dehydrogenase XP_001384055.1 497640 D 322104 CDS PICST_31316 150865010 4839056 499833..501056 1 NC_009044.1 NADPH dehydrogenase (old yellow enzyme); go_function: oxidoreductase activity; go_process: electron transport; NADPH dehydrogenase (EPB1) 501056 OYE2.8 4839056 OYE2.8 Pichia stipitis CBS 6054 NADPH dehydrogenase (EPB1) XP_001384056.2 499833 D 322104 CDS PICST_67505 150865011 4838925 501420..502418 1 NC_009044.1 involved in cytochrome-c reductase assembly; Protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome bc1 complex) 502418 CBP3 4838925 CBP3 Pichia stipitis CBS 6054 Protein required for assembly of ubiquinol cytochrome-c reductase complex (cytochrome bc1 complex) XP_001384057.2 501420 D 322104 CDS PICST_58555 150865249 4838926 complement(502552..503355) 1 NC_009044.1 predicted protein 503355 4838926 PICST_58555 Pichia stipitis CBS 6054 predicted protein XP_001384390.2 502552 R 322104 CDS PICST_83552 150865012 4838573 504221..505279 1 NC_009044.1 go_component: nucleus; predicted protein 505279 4838573 PICST_83552 Pichia stipitis CBS 6054 predicted protein XP_001384058.2 504221 D 322104 CDS PICST_83083 150865250 4838927 complement(join(505496..506284,506372..508253,508284..508467,508579..508956,509026..509407)) 1 NC_009044.1 predicted protein 509407 4838927 PICST_83083 Pichia stipitis CBS 6054 predicted protein XP_001384391.2 505496 R 322104 CDS PICST_35844 150865251 4838574 complement(510967..512178) 1 NC_009044.1 go_function: glycerophosphodiester phosphodiesterase activity; go_process: glycerol metabolism; Glycerophosphodiester phosphodiesterase 512178 GLP1 4838574 GLP1 Pichia stipitis CBS 6054 Glycerophosphodiester phosphodiesterase XP_001384392.2 510967 R 322104 CDS PICST_83628 150865252 4838575 complement(513052..514419) 1 NC_009044.1 hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; hydrolase 514419 NPY1 4838575 NPY1 Pichia stipitis CBS 6054 hydrolase XP_001384393.2 513052 R 322104 CDS PICST_31323 150865253 4838839 complement(516083..517864) 1 NC_009044.1 DEAD-box ATP-dependent RNA helicase; go_function: nucleic acid binding; helicase activity; ATP binding; mitochondrial RNA helicase 517864 MRH4 4838839 MRH4 Pichia stipitis CBS 6054 mitochondrial RNA helicase XP_001384394.2 516083 R 322104 CDS PICST_44820 150865013 4838840 518155..519606 1 NC_009044.1 predicted protein 519606 4838840 PICST_44820 Pichia stipitis CBS 6054 predicted protein XP_001384059.2 518155 D 322104 CDS PICST_83504 126135742 4838928 complement(519961..520506) 1 NC_009044.1 predicted protein 520506 4838928 PICST_83504 Pichia stipitis CBS 6054 predicted protein XP_001384395.1 519961 R 322104 CDS PICST_58964 150865014 4838841 join(<521090..521243,521489..>522762) 1 NC_009044.1 go_function: pseudouridylate synthase activity; go_process: tRNA processing; predicted protein 521243 4838841 PICST_58964 Pichia stipitis CBS 6054 predicted protein XP_001384060.2 <521090 D 322104 CDS PICST_67511 150865254 4838929 complement(join(523131..523226,523251..524408)) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; casein kinase I 524408 HRR25 4838929 HRR25 Pichia stipitis CBS 6054 casein kinase I XP_001384396.2 523131 R 322104 CDS PICST_67512 150865255 4838842 complement(526192..526686) 1 NC_009044.1 protein is highly expressed but a mix-up of various motifs; probable viral-related protein 526686 4838842 PICST_67512 Pichia stipitis CBS 6054 probable viral-related protein XP_001384397.2 526192 R 322104 CDS PICST_20073 150865015 4838843 <529290..>530069 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein >530069 4838843 PICST_20073 Pichia stipitis CBS 6054 predicted protein XP_001384061.2 <529290 D 322104 CDS PICST_72079 150865256 4838930 complement(530367..531881) 1 NC_009044.1 predicted protein 531881 4838930 PICST_72079 Pichia stipitis CBS 6054 predicted protein XP_001384398.2 530367 R 322104 CDS PICST_31331 150865257 4838844 complement(533066..535024) 1 NC_009044.1 predicted protein 535024 4838844 PICST_31331 Pichia stipitis CBS 6054 predicted protein XP_001384399.2 533066 R 322104 CDS PICST_67514 150865016 4838845 join(535796..535870,536030..538081) 1 NC_009044.1 Fe-S oxidoreductase Ribosomal protein L5; Fe-S oxidoreductase 538081 YPO7 4838845 YPO7 Pichia stipitis CBS 6054 Fe-S oxidoreductase XP_001384062.2 535796 D 322104 CDS PICST_89290 150865017 4838957 538445..539821 1 NC_009044.1 Alpha-1,3-mannosyltransferase ALG2 (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase); go_process: biosynthesis; mannosyltransferase 539821 ALG2 4838957 ALG2 Pichia stipitis CBS 6054 mannosyltransferase XP_001384063.2 538445 D 322104 CDS PICST_45166 150865258 4838958 complement(join(539928..540297,540421..>541199)) 1 NC_009044.1 predicted protein 540297 4838958 PICST_45166 Pichia stipitis CBS 6054 predicted protein XP_001384400.2 539928 R 322104 CDS PICST_67516 126135080 4838846 join(543586..543604,544023..544576) 1 NC_009044.1 go_function: GTP binding; GTP-binding protein 544576 SAR1 4838846 SAR1 Pichia stipitis CBS 6054 GTP-binding protein XP_001384064.1 543586 D 322104 CDS PICST_77411 126135082 4838959 join(544926..545802,545833..546917) 1 NC_009044.1 predicted protein 546917 4838959 PICST_77411 Pichia stipitis CBS 6054 predicted protein XP_001384065.1 544926 D 322104 CDS PICST_89215 126135754 4838960 complement(547166..547819) 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 547819 4838960 PICST_89215 Pichia stipitis CBS 6054 predicted protein XP_001384401.1 547166 R 322104 CDS PICST_83107 150865018 4838403 join(548308..548926,548963..549417) 1 NC_009044.1 predicted protein 549417 4838403 PICST_83107 Pichia stipitis CBS 6054 predicted protein XP_001384066.2 548308 D 322104 CDS PICST_77338 150865259 4838961 complement(549617..552385) 1 NC_009044.1 go_function: protein transporter activity; go_process: intracellular protein transport; predicted protein 552385 4838961 PICST_77338 Pichia stipitis CBS 6054 predicted protein XP_001384402.2 549617 R 322104 CDS PICST_83561 126135758 4838404 complement(join(552938..554751,555331..555337)) 1 NC_009044.1 Specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-Glycosylation intermediate; go_process: biosynthesis; protein required for asparagine-linked oligosaccharide assembly 555337 ALG11 4838404 ALG11 Pichia stipitis CBS 6054 protein required for asparagine-linked oligosaccharide assembly XP_001384403.1 552938 R 322104 CDS PICST_67522 150865019 4838405 556145..557443 1 NC_009044.1 predicted protein 557443 4838405 PICST_67522 Pichia stipitis CBS 6054 predicted protein XP_001384067.2 556145 D 322104 CDS PICST_31342 126135088 4838962 558868..559899 1 NC_009044.1 go_function: metalloexopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 559899 4838962 PICST_31342 Pichia stipitis CBS 6054 predicted protein XP_001384068.1 558868 D 322104 CDS PICST_22250 150865020 4838963 join(561353..561386,561798..>562153) 1 NC_009044.1 go_function: structural molecule activity; predicted protein 561386 4838963 PICST_22250 Pichia stipitis CBS 6054 predicted protein XP_001384069.2 561353 D 322104 CDS PICST_45709 150865021 4838964 563439..564857 1 NC_009044.1 go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; predicted protein 564857 4838964 PICST_45709 Pichia stipitis CBS 6054 predicted protein XP_001384070.2 563439 D 322104 CDS PICST_67525 150865260 4838965 complement(564972..567983) 1 NC_009044.1 predicted protein 567983 4838965 PICST_67525 Pichia stipitis CBS 6054 predicted protein XP_001384404.2 564972 R 322104 CDS PICST_83582 150865261 4838406 complement(568356..570812) 1 NC_009044.1 go_component: membrane; go_function: voltage-gated chloride channel activity; go_process: chloride transport; chloride channel, possibly voltage gated 570812 GEF2 4838406 GEF2 Pichia stipitis CBS 6054 chloride channel, possibly voltage gated XP_001384405.2 568356 R 322104 CDS PICST_77577 150865022 4838407 571456..572553 1 NC_009044.1 predicted protein 572553 4838407 PICST_77577 Pichia stipitis CBS 6054 predicted protein XP_001384071.2 571456 D 322104 CDS PICST_67528 126135096 4838966 573323..574138 1 NC_009044.1 hypothetical beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain 574138 4838966 PICST_67528 Pichia stipitis CBS 6054 hypothetical beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain XP_001384072.1 573323 D 322104 CDS PICST_65566 150865023 4838967 join(577230..577805,577920..578019,578251..578847,578869..579189,579217..579530,579564..579860) 1 NC_009044.1 predicted protein 579860 4838967 PICST_65566 Pichia stipitis CBS 6054 predicted protein XP_001384073.2 577230 D 322104 CDS PICST_58095 150865262 4838968 complement(580375..581808) 1 NC_009044.1 Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase (Dol-P-Man dependent alpha(1-3)-mannosyltransferase) (HM-1 killer toxin resistance protein); go_component: endoplasmic reticulum; integral to membrane; go_function: mannosyltransferase activity; Dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase 581808 RHK1 4838968 RHK1 Pichia stipitis CBS 6054 Dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase XP_001384406.2 580375 R 322104 CDS PICST_58583 150865263 4838408 complement(582086..584083) 1 NC_009044.1 putaative nucleolar protein required for 60S ribosome biogenesis 584083 NOP8 4838408 NOP8 Pichia stipitis CBS 6054 putaative nucleolar protein required for 60S ribosome biogenesis XP_001384407.2 582086 R 322104 CDS PICST_59339 150865264 4838423 complement(join(585093..585299,585321..585794)) 1 NC_009044.1 go_component: peroxisomal membrane; go_process: peroxisome division; predicted protein 585794 4838423 PICST_59339 Pichia stipitis CBS 6054 predicted protein XP_001384408.2 585093 R 322104 CDS PICST_31353 150865024 4838424 587275..588069 1 NC_009044.1 predicted protein 588069 4838424 PICST_31353 Pichia stipitis CBS 6054 predicted protein XP_001384074.2 587275 D 322104 CDS PICST_31354 126135770 4838969 complement(588145..589020) 1 NC_009044.1 predicted protein 589020 4838969 PICST_31354 Pichia stipitis CBS 6054 predicted protein XP_001384409.1 588145 R 322104 CDS PICST_83261 150865025 4838425 589701..590966 1 NC_009044.1 go_component: membrane; go_function: bile acid:sodium symporter activity; go_process: sodium ion transport; predicted protein 590966 4838425 PICST_83261 Pichia stipitis CBS 6054 predicted protein XP_001384075.2 589701 D 322104 CDS PICST_83089 150865026 4838970 join(592694..593115,593326..594167,594289..594293,594374..>594634) 1 NC_009044.1 predicted protein 594293 4838970 PICST_83089 Pichia stipitis CBS 6054 predicted protein XP_001384076.2 592694 D 322104 CDS PICST_35865 150865265 4838439 complement(596036..597103) 1 NC_009044.1 go_function: phosphogluconate dehydrogenase (decarboxylating) activity; go_process: pentose-phosphate shunt; 3-hydroxyisobutyrate dehydrogenase-like protein 597103 HIB1 4838439 HIB1 Pichia stipitis CBS 6054 3-hydroxyisobutyrate dehydrogenase-like protein XP_001384410.2 596036 R 322104 CDS PICST_45364 150865027 4838426 598217..599119 1 NC_009044.1 predicted protein 599119 4838426 PICST_45364 Pichia stipitis CBS 6054 predicted protein XP_001384077.2 598217 D 322104 CDS PICST_58727 150865266 4838440 complement(join(599239..600439,600464..600690)) 1 NC_009044.1 go_function: catalytic activity; go_process: protein modification; predicted protein 600690 4838440 PICST_58727 Pichia stipitis CBS 6054 predicted protein XP_001384411.2 599239 R 322104 CDS PICST_59359 150865028 4838427 600917..601846 1 NC_009044.1 rRNA and tRNA processing 601846 POP4 4838427 POP4 Pichia stipitis CBS 6054 rRNA and tRNA processing XP_001384078.2 600917 D 322104 CDS PICST_58094 150865267 4838441 complement(join(601873..602510,602550..602808)) 1 NC_009044.1 predicted protein 602808 4838441 PICST_58094 Pichia stipitis CBS 6054 predicted protein XP_001384412.2 601873 R 322104 CDS PICST_45576 150865268 4838428 complement(603312..604280) 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; 34-kDa subunit of RNA polymerase III (C) 604280 RPC34 4838428 RPC34 Pichia stipitis CBS 6054 34-kDa subunit of RNA polymerase III (C) XP_001384413.2 603312 R 322104 CDS PICST_31363 150865029 4838988 604746..605654 1 NC_009044.1 predicted protein 605654 4838988 PICST_31363 Pichia stipitis CBS 6054 predicted protein XP_001384079.2 604746 D 322104 CDS PICST_35868 150865030 4838442 606416..607438 1 NC_009044.1 go_function: amino acid binding; carboxyl- and carbamoyltransferase activity; go_process: amino acid metabolism; ornithine carbamoyltransferase 607438 ARG3 4838442 ARG3 Pichia stipitis CBS 6054 ornithine carbamoyltransferase XP_001384080.2 606416 D 322104 CDS PICST_72153 150865031 4838443 608447..609460 1 NC_009044.1 induced by osmotic stress similar to dihydroflavonol 4-reductase from plants; NADPH-dependent methylglyoxal reductase GRE2 609460 GRE2 4838443 GRE2 Pichia stipitis CBS 6054 NADPH-dependent methylglyoxal reductase GRE2 XP_001384081.2 608447 D 322104 CDS PICST_67534 150865032 4838444 611033..611872 1 NC_009044.1 predicted protein 611872 4838444 PICST_67534 Pichia stipitis CBS 6054 predicted protein XP_001384082.2 611033 D 322104 CDS PICST_31367 150865033 4838445 613592..615445 1 NC_009044.1 predicted protein 615445 4838445 PICST_31367 Pichia stipitis CBS 6054 predicted protein XP_001384083.2 613592 D 322104 CDS PICST_45145 150865034 4838446 <616866..618545 1 NC_009044.1 predicted protein 618545 4838446 PICST_45145 Pichia stipitis CBS 6054 predicted protein XP_001384084.2 <616866 D 322104 CDS PICST_59178 150865035 4838908 join(<618889..621441,621475..621894) 1 NC_009044.1 conserved hypothetical protein 621894 WDR6 4838908 WDR6 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384085.2 <618889 D 322104 CDS PICST_83229 126135780 4838909 complement(622008..625256) 1 NC_009044.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; isoleucyl-tRNA synthetase 625256 ILS1 4838909 ILS1 Pichia stipitis CBS 6054 isoleucyl-tRNA synthetase XP_001384414.1 622008 R 322104 CDS PICST_31371 150865036 4838989 625944..627398 1 NC_009044.1 predicted protein 627398 4838989 PICST_31371 Pichia stipitis CBS 6054 predicted protein XP_001384086.2 625944 D 322104 CDS PICST_58795 150865037 4838910 join(627998..632140,632201..>632281) 1 NC_009044.1 predicted protein 632140 4838910 PICST_58795 Pichia stipitis CBS 6054 predicted protein XP_001384087.2 627998 D 322104 CDS PICST_31373 150865038 4838911 634241..635539 1 NC_009044.1 predicted protein 635539 4838911 PICST_31373 Pichia stipitis CBS 6054 predicted protein XP_001384088.2 634241 D 322104 CDS PICST_45334 150865269 4838912 complement(<635810..637066) 1 NC_009044.1 go_component: membrane; go_function: cation transporter activity; go_process: cation transport; zinc- and cadmium resistance protein 637066 ZRC1 4838912 ZRC1 Pichia stipitis CBS 6054 zinc- and cadmium resistance protein XP_001384415.2 <635810 R 322104 CDS PICST_67536 126135784 4838990 complement(639288..640307) 1 NC_009044.1 predicted protein 640307 4838990 PICST_67536 Pichia stipitis CBS 6054 predicted protein XP_001384416.1 639288 R 322104 CDS PICST_65571 150865270 4838991 complement(join(641092..641694,641761..642657)) 1 NC_009044.1 go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; vacuolar Zn-iron permease 642657 ZRT3 4838991 ZRT3 Pichia stipitis CBS 6054 vacuolar Zn-iron permease XP_001384417.2 641092 R 322104 CDS PICST_77835 126135788 4838992 complement(643579..644934) 1 NC_009044.1 predicted protein 644934 4838992 PICST_77835 Pichia stipitis CBS 6054 predicted protein XP_001384418.1 643579 R 322104 CDS PICST_59041 150865271 4838993 complement(646031..647044) 1 NC_009044.1 predicted protein 647044 4838993 PICST_59041 Pichia stipitis CBS 6054 predicted protein XP_001384419.2 646031 R 322104 CDS PICST_31379 150865039 4839032 join(647470..647658,647964..649943) 1 NC_009044.1 go_component: intracellular; nucleus; go_process: RNA processing; mRNA processing; predicted protein 649943 4839032 PICST_31379 Pichia stipitis CBS 6054 predicted protein XP_001384089.2 647470 D 322104 CDS PICST_31380 150865040 4838913 650115..651434 1 NC_009044.1 predicted protein 651434 4838913 PICST_31380 Pichia stipitis CBS 6054 predicted protein XP_001384090.2 650115 D 322104 CDS PICST_59461 150865272 4838914 complement(651485..652567) 1 NC_009044.1 go_function: rRNA (adenine-N6,N6-)-dimethyltransferase activity; rRNA methyltransferase activity; go_process: rRNA modification; predicted protein 652567 4838914 PICST_59461 Pichia stipitis CBS 6054 predicted protein XP_001384420.2 651485 R 322104 CDS PICST_67539 150865041 4839033 652805..653359 1 NC_009044.1 predicted protein 653359 4839033 PICST_67539 Pichia stipitis CBS 6054 predicted protein XP_001384091.2 652805 D 322104 CDS PICST_83690 150865273 4838915 complement(join(653573..657822,657895..657967,658115..658492)) 1 NC_009044.1 Transcription regulatory protein SNF2 (SWI/SNF complex component SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1) (Transcription factor TYE3); go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; component of SWI/SNF global transcription activator complex 658492 SNF2 4838915 SNF2 Pichia stipitis CBS 6054 component of SWI/SNF global transcription activator complex XP_001384421.2 653573 R 322104 CDS PICST_45012 150865274 4839034 complement(659103..660341) 1 NC_009044.1 predicted protein 660341 4839034 PICST_45012 Pichia stipitis CBS 6054 predicted protein XP_001384422.2 659103 R 322104 CDS PICST_3603 150865275 4839035 complement(<661442..>662611) 1 NC_009044.1 go_function: GTP binding; go_process: cell cycle; predicted protein >662611 4839035 PICST_3603 Pichia stipitis CBS 6054 predicted protein XP_001384423.2 <661442 R 322104 CDS PICST_67542 150865276 4839036 complement(667091..670519) 1 NC_009044.1 hypothetical protein 670519 4839036 PICST_67542 Pichia stipitis CBS 6054 hypothetical protein XP_001384424.2 667091 R 322104 CDS PICST_83093 126135802 4839037 complement(join(671549..672612,672800..672854)) 1 NC_009044.1 DAHP synthase a.k.a. phospho-2-dehydro-3-deoxyheptonate aldolase, phenylalanine-inhibited phospho-2-keto-3-deoxyheptonate aldolase 2-dehydro-3-deoxyphosphoheptonate aldolase 3-deoxy-D-arabine-heptulosonate-7-phosphate synthase; go_process: biosynthesis; 2-dehydro-3-deoxy- phosphoheptonate aldolase 672854 ARO3 4839037 ARO3 Pichia stipitis CBS 6054 2-dehydro-3-deoxy- phosphoheptonate aldolase XP_001384425.1 671549 R 322104 CDS PICST_65573 150865277 4839038 complement(673795..676206) 1 NC_009044.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 676206 4839038 PICST_65573 Pichia stipitis CBS 6054 predicted protein XP_001384426.2 673795 R 322104 CDS PICST_31390 150865042 4838457 676543..677766 1 NC_009044.1 chitinase endochitinase 1 precursor (CHI1); go_function: hydrolase activity; go_process: metabolism; chitinase endochitinase 1 precursor 677766 CHT4 4838457 CHT4 Pichia stipitis CBS 6054 chitinase endochitinase 1 precursor XP_001384092.2 676543 D 322104 CDS PICST_67545 150865278 4838742 complement(678019..679065) 1 NC_009044.1 predicted protein 679065 4838742 PICST_67545 Pichia stipitis CBS 6054 predicted protein XP_001384427.2 678019 R 322104 CDS PICST_59054 150865043 4838458 join(<681162..682413,682444..682456,682484..687587) 1 NC_009044.1 go_function: zinc ion binding; 1-phosphatidylinositol-4-phosphate 5-kinase activity; phosphatidylinositol 3-phosphate 5-kinase 687587 FAB1 4838458 FAB1 Pichia stipitis CBS 6054 phosphatidylinositol 3-phosphate 5-kinase XP_001384093.2 <681162 D 322104 CDS PICST_31393 150865044 4838743 689444..691075 1 NC_009044.1 predicted protein 691075 4838743 PICST_31393 Pichia stipitis CBS 6054 predicted protein XP_001384094.2 689444 D 322104 CDS PICST_58577 150865279 4838744 complement(691472..692548) 1 NC_009044.1 go_component: membrane; predicted protein 692548 4838744 PICST_58577 Pichia stipitis CBS 6054 predicted protein XP_001384428.2 691472 R 322104 CDS PICST_67546 150865280 4838459 complement(join(692914..693119,693192..695421)) 1 NC_009044.1 predicted protein 695421 4838459 PICST_67546 Pichia stipitis CBS 6054 predicted protein XP_001384429.2 692914 R 322104 CDS PICST_44970 150865045 4838460 <699749..701104 1 NC_009044.1 Antagonist of MEN (Mitotic Exit Network) 701104 AMN1 4838460 AMN1 Pichia stipitis CBS 6054 Antagonist of MEN (Mitotic Exit Network) XP_001384095.2 <699749 D 322104 CDS PICST_31397 150865046 4838745 704596..706356 1 NC_009044.1 hypothetical protein 706356 4838745 PICST_31397 Pichia stipitis CBS 6054 hypothetical protein XP_001384096.2 704596 D 322104 CDS PICST_58581 150865281 4838746 complement(join(<706846..708426,708484..>708723)) 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; zinc ion binding; go_process: transcription; predicted protein 708426 4838746 PICST_58581 Pichia stipitis CBS 6054 predicted protein XP_001384430.2 <706846 R 322104 CDS PICST_44699 126135146 4838461 <711678..712037 1 NC_009044.1 go_function: molecular function unknown; Iron Sulfur Assembly 712037 ISA1 4838461 ISA1 Pichia stipitis CBS 6054 Iron Sulfur Assembly XP_001384097.1 <711678 D 322104 CDS PICST_45809 150865282 4838747 complement(712395..712841) 1 NC_009044.1 predicted protein 712841 4838747 PICST_45809 Pichia stipitis CBS 6054 predicted protein XP_001384431.2 712395 R 322104 CDS PICST_65576 126135148 4838462 715748..716794 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; metabolism; predicted protein 716794 4838462 PICST_65576 Pichia stipitis CBS 6054 predicted protein XP_001384098.1 715748 D 322104 CDS PICST_31403 150865283 4838450 complement(join(716912..717686,717732..717979)) 1 NC_009044.1 predicted protein 717979 4838450 PICST_31403 Pichia stipitis CBS 6054 predicted protein XP_001384432.2 716912 R 322104 CDS PICST_35882 150865047 4838463 join(718377..719310,719416..719873) 1 NC_009044.1 RNA exonuclease NGL2 (Carbon catabolite repressor protein 4 homolog) 719873 NGL2 4838463 NGL2 Pichia stipitis CBS 6054 RNA exonuclease NGL2 (Carbon catabolite repressor protein 4 homolog) XP_001384099.2 718377 D 322104 CDS PICST_83299 150865284 4838451 complement(720058..720921) 1 NC_009044.1 completion of mitosis and maintenance of ploidy 720921 MOB1 4838451 MOB1 Pichia stipitis CBS 6054 completion of mitosis and maintenance of ploidy XP_001384433.2 720058 R 322104 CDS PICST_35884 150865048 4838889 join(721536..721570,721652..721935,722278..723487,723558..723813,723840..724118,724389..724445) 1 NC_009044.1 predicted protein 724445 4838889 PICST_35884 Pichia stipitis CBS 6054 predicted protein XP_001384100.2 721536 D 322104 CDS PICST_45823 150865285 4838452 complement(724582..726153) 1 NC_009044.1 go_process: regulation of cell cycle; predicted protein 726153 4838452 PICST_45823 Pichia stipitis CBS 6054 predicted protein XP_001384434.2 724582 R 322104 CDS PICST_31408 126135822 4838890 complement(726782..727147) 1 NC_009044.1 predicted protein 727147 4838890 PICST_31408 Pichia stipitis CBS 6054 predicted protein XP_001384435.1 726782 R 322104 CDS PICST_89007 150865286 4838891 complement(join(727928..729447,729529..730249)) 1 NC_009044.1 predicted protein 730249 4838891 PICST_89007 Pichia stipitis CBS 6054 predicted protein XP_001384436.2 727928 R 322104 CDS PICST_67553 150865287 4838892 complement(731265..733817) 1 NC_009044.1 hypothetical protein 733817 4838892 PICST_67553 Pichia stipitis CBS 6054 hypothetical protein XP_001384437.2 731265 R 322104 CDS PICST_11568 126135828 4838893 complement(join(<735384..736321,736373..>736403)) 1 NC_009044.1 predicted protein 736321 4838893 PICST_11568 Pichia stipitis CBS 6054 predicted protein XP_001384438.1 <735384 R 322104 CDS PICST_31412 150865288 4838894 complement(join(737567..738680,738739..738989)) 1 NC_009044.1 predicted protein 738989 4838894 PICST_31412 Pichia stipitis CBS 6054 predicted protein XP_001384439.2 737567 R 322104 CDS PICST_83216 150865289 4838895 complement(join(739287..740294,740331..744422)) 1 NC_009044.1 Rrp5p is the only ribosomal RNA processing trans-acting factor that is required for the synthesis of both 18S and 5.8S rRNAs; go_function: RNA binding; Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA) 744422 RRP5 4838895 RRP5 Pichia stipitis CBS 6054 Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA) XP_001384440.2 739287 R 322104 CDS PICST_31414 150865290 4838564 complement(745035..745985) 1 NC_009044.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; GATA-family of DNA binding proteins-like protein 745985 GAT2.2 4838564 GAT2.2 Pichia stipitis CBS 6054 GATA-family of DNA binding proteins-like protein XP_001384441.2 745035 R 322104 CDS PICST_58891 150865291 4838565 complement(join(746550..748257,748450..748532)) 1 NC_009044.1 predicted protein 748532 4838565 PICST_58891 Pichia stipitis CBS 6054 predicted protein XP_001384442.2 746550 R 322104 CDS PICST_59029 126135838 4838566 complement(join(749000..749691,749773..>749791)) 1 NC_009044.1 go_function: catalytic activity; go_process: metabolism; predicted protein 749691 4838566 PICST_59029 Pichia stipitis CBS 6054 predicted protein XP_001384443.1 749000 R 322104 CDS PICST_65580 150865292 4838567 complement(750274..751236) 1 NC_009044.1 go_process: nucleoside metabolism; ribose-phosphate pyrophosphokinase 751236 PRS1 4838567 PRS1 Pichia stipitis CBS 6054 ribose-phosphate pyrophosphokinase XP_001384444.2 750274 R 322104 CDS PICST_44391 150865293 4838568 complement(join(<753015..753597,753628..753866)) 1 NC_009044.1 predicted molecular weight of 67 kD; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription; TFIID subunit (TBP-associated factor) 753866 TAF67 4838568 TAF67 Pichia stipitis CBS 6054 TFIID subunit (TBP-associated factor) XP_001384445.2 <753015 R 322104 CDS PICST_58093 150865049 4838666 754336..758412 1 NC_009044.1 go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; cation translocating P-type ATPase 758412 ATC9 4838666 ATC9 Pichia stipitis CBS 6054 cation translocating P-type ATPase XP_001384101.2 754336 D 322104 CDS PICST_31420 150865050 4838453 761301..762077 1 NC_009044.1 go_component: membrane; go_function: molecular function unknown; predicted protein 762077 4838453 PICST_31420 Pichia stipitis CBS 6054 predicted protein XP_001384102.2 761301 D 322104 CDS PICST_77382 150865294 4838454 complement(762464..764650) 1 NC_009044.1 go_function: catalytic activity; Lanosterol synthase (Oxidosqualene--lanosterol cyclase) (2,3-epoxysqualene--lanosterol cyclase) (OSC) 764650 ERG7 4838454 ERG7 Pichia stipitis CBS 6054 Lanosterol synthase (Oxidosqualene--lanosterol cyclase) (2,3-epoxysqualene--lanosterol cyclase) (OSC) XP_001384446.2 762464 R 322104 CDS PICST_83621 150865295 4838667 complement(join(765688..765762,765781..769047)) 1 NC_009044.1 go_function: alpha-mannosidase activity; go_process: carbohydrate metabolism; Glycoside hydrolase, family 38 vacuolar alpha mannosidase 769047 AMS1 4838667 AMS1 Pichia stipitis CBS 6054 Glycoside hydrolase, family 38 vacuolar alpha mannosidase XP_001384447.2 765688 R 322104 CDS PICST_31423 126135848 4838668 complement(770150..770533) 1 NC_009044.1 predicted protein 770533 4838668 PICST_31423 Pichia stipitis CBS 6054 predicted protein XP_001384448.1 770150 R 322104 CDS PICST_31424 150865051 4838669 771278..771739 1 NC_009044.1 predicted protein 771739 4838669 PICST_31424 Pichia stipitis CBS 6054 predicted protein XP_001384103.2 771278 D 322104 CDS PICST_89018 126135160 4838455 join(772655..772667,773102..773553) 1 NC_009044.1 go_function: copper, zinc superoxide dismutase activity; metal ion binding; go_process: superoxide metabolism; Superoxide dismutase (Cu-Zn) 773553 SOD1 4838455 SOD1 Pichia stipitis CBS 6054 Superoxide dismutase (Cu-Zn) XP_001384104.1 772655 D 322104 CDS PICST_31426 150865052 4838456 775040..776005 1 NC_009044.1 go_function: RNA binding; endoribonuclease activity; Ribonuclease T2 precursor (RNase T2) 776005 RBT7 4838456 RBT7 Pichia stipitis CBS 6054 Ribonuclease T2 precursor (RNase T2) XP_001384105.2 775040 D 322104 CDS PICST_67560 150865053 4838464 779199..784529 1 NC_009044.1 Drs2 Neo1 Family aminophospholipid-translocating ATPase; go_function: catalytic activity; go_process: metabolism; aminophospholipid-translocating ATPase 784529 DNF3 4838464 DNF3 Pichia stipitis CBS 6054 aminophospholipid-translocating ATPase XP_001384106.2 779199 D 322104 CDS PICST_35896 150865296 4838465 complement(784643..787357) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 787357 4838465 PICST_35896 Pichia stipitis CBS 6054 predicted protein XP_001384449.2 784643 R 322104 CDS PICST_3461 150865054 4838670 <787953..>789491 1 NC_009044.1 GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis Cell wall/membrane/envelope biogenesis; go_component: integral to membrane; GPI-anchor transamidase complex; GPI transamidase component >789491 GPI16 4838670 GPI16 Pichia stipitis CBS 6054 GPI transamidase component XP_001384107.2 <787953 D 322104 CDS PICST_31430 150865055 4838466 790482..791183 1 NC_009044.1 predicted protein 791183 4838466 PICST_31430 Pichia stipitis CBS 6054 predicted protein XP_001384108.2 790482 D 322104 CDS PICST_83039 150865297 4838467 complement(join(791427..792035,792060..792323)) 1 NC_009044.1 predicted protein 792323 4838467 PICST_83039 Pichia stipitis CBS 6054 predicted protein XP_001384450.2 791427 R 322104 CDS PICST_83464 150865056 4838671 792779..796051 1 NC_009044.1 predicted protein 796051 4838671 PICST_83464 Pichia stipitis CBS 6054 predicted protein XP_001384109.2 792779 D 322104 CDS PICST_31433 126135854 4838468 complement(<796169..796753) 1 NC_009044.1 predicted protein 796753 4838468 PICST_31433 Pichia stipitis CBS 6054 predicted protein XP_001384451.1 <796169 R 322104 CDS PICST_58773 150865057 4838672 join(<797241..797432,797451..>798035) 1 NC_009044.1 predicted protein 797432 4838672 PICST_58773 Pichia stipitis CBS 6054 predicted protein XP_001384110.2 <797241 D 322104 CDS PICST_77786 150865058 4838469 799481..801508 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 801508 4838469 PICST_77786 Pichia stipitis CBS 6054 predicted protein XP_001384111.2 799481 D 322104 CDS PICST_31436 150865298 4838548 complement(801898..803037) 1 NC_009044.1 predicted protein 803037 4838548 PICST_31436 Pichia stipitis CBS 6054 predicted protein XP_001384452.2 801898 R 322104 CDS PICST_31437 150865299 4838673 complement(804284..805369) 1 NC_009044.1 predicted protein 805369 4838673 PICST_31437 Pichia stipitis CBS 6054 predicted protein XP_001384453.2 804284 R 322104 CDS PICST_83392 150865300 4838674 complement(join(809050..812324,812349..812811)) 1 NC_009044.1 predicted protein 812811 4838674 PICST_83392 Pichia stipitis CBS 6054 predicted protein XP_001384454.2 809050 R 322104 CDS PICST_59404 126135862 4838675 complement(813955..814842) 1 NC_009044.1 predicted protein 814842 4838675 PICST_59404 Pichia stipitis CBS 6054 predicted protein XP_001384455.1 813955 R 322104 CDS PICST_58974 150865059 4838676 815034..815924 1 NC_009044.1 predicted protein 815924 4838676 PICST_58974 Pichia stipitis CBS 6054 predicted protein XP_001384112.2 815034 D 322104 CDS PICST_31442 150865301 4838549 complement(816041..817294) 1 NC_009044.1 go_function: disulfide oxidoreductase activity; go_process: electron transport; predicted protein 817294 4838549 PICST_31442 Pichia stipitis CBS 6054 predicted protein XP_001384456.2 816041 R 322104 CDS PICST_58800 126135866 4838677 complement(join(817656..818569,818591..818948)) 1 NC_009044.1 pyridine nucleotide-disulphide oxidoreductase family; NADH dehydrogenase, internal, ubiquinone 818948 NDI1 4838677 NDI1 Pichia stipitis CBS 6054 NADH dehydrogenase, internal, ubiquinone XP_001384457.1 817656 R 322104 CDS PICST_83565 150865302 4838678 complement(join(820181..822060,822082..822349)) 1 NC_009044.1 involved in vacuolar polyphosphate accumulation; polyphosphate synthetase Protein 822349 VTC4 4838678 VTC4 Pichia stipitis CBS 6054 polyphosphate synthetase Protein XP_001384458.2 820181 R 322104 CDS PICST_83340 150865303 4838679 complement(823790..824926) 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; d-amino acid oxidase 824926 DAO2 4838679 DAO2 Pichia stipitis CBS 6054 d-amino acid oxidase XP_001384459.2 823790 R 322104 CDS PICST_71926 126135178 4838974 825477..826085 1 NC_009044.1 predicted protein 826085 4838974 PICST_71926 Pichia stipitis CBS 6054 predicted protein XP_001384113.1 825477 D 322104 CDS PICST_71904 126135180 4838550 827432..828307 1 NC_009044.1 predicted protein 828307 4838550 PICST_71904 Pichia stipitis CBS 6054 predicted protein XP_001384114.1 827432 D 322104 CDS PICST_58133 150865060 4838551 830589..>831008 1 NC_009044.1 predicted protein >831008 4838551 PICST_58133 Pichia stipitis CBS 6054 predicted protein XP_001384115.2 830589 D 322104 CDS PICST_59469 150865304 4838552 complement(831762..833867) 1 NC_009044.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 833867 4838552 PICST_59469 Pichia stipitis CBS 6054 predicted protein XP_001384460.2 831762 R 322104 CDS PICST_12458 150865305 4838975 complement(join(<835642..835794,835840..>836340)) 1 NC_009044.1 COP9 signalosome subunit 5A / CSN subunit 5A (CSN5A) / c-JUN coactivator protein AJH2, putative (AJH2) 835794 COP9 4838975 COP9 Pichia stipitis CBS 6054 COP9 signalosome subunit 5A / CSN subunit 5A (CSN5A) / c-JUN coactivator protein AJH2, putative (AJH2) XP_001384461.2 <835642 R 322104 CDS PICST_31452 150865306 4838976 complement(836762..838561) 1 NC_009044.1 predicted protein 838561 4838976 PICST_31452 Pichia stipitis CBS 6054 predicted protein XP_001384462.2 836762 R 322104 CDS PICST_44613 126135184 4838977 840449..841669 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; NADPH dehydrogenase 841669 OYE2.7 4838977 OYE2.7 Pichia stipitis CBS 6054 NADPH dehydrogenase XP_001384116.1 840449 D 322104 CDS PICST_31454 126135878 4838553 complement(842637..845579) 1 NC_009044.1 similar to Candida albicans HYR10; hyphally-regulated cell wall protein 845579 HYR10 4838553 HYR10 Pichia stipitis CBS 6054 hyphally-regulated cell wall protein XP_001384463.1 842637 R 322104 CDS PICST_88879 150865307 4838978 complement(847794..850247) 1 NC_009044.1 clathrin assembly complex beta adaptin component 850247 APL6 4838978 APL6 Pichia stipitis CBS 6054 clathrin assembly complex beta adaptin component XP_001384464.2 847794 R 322104 CDS PICST_35911 150865308 4838979 complement(850663..853641) 1 NC_009044.1 go_function: nuclease activity; go_process: DNA repair; predicted protein 853641 4838979 PICST_35911 Pichia stipitis CBS 6054 predicted protein XP_001384465.2 850663 R 322104 CDS PICST_58626 150865061 4838980 855241..857010 1 NC_009044.1 go_function: gamma-glutamyltransferase activity; gamma-glutamyltransferase 857010 EMC37 4838980 EMC37 Pichia stipitis CBS 6054 gamma-glutamyltransferase XP_001384117.2 855241 D 322104 CDS PICST_31458 150865062 4838554 858558..>859481 1 NC_009044.1 predicted protein >859481 4838554 PICST_31458 Pichia stipitis CBS 6054 predicted protein XP_001384118.2 858558 D 322104 CDS PICST_89047 150865309 4838555 complement(join(859663..861641,861768..862302)) 1 NC_009044.1 go_process: steroid metabolism; predicted protein 862302 4838555 PICST_89047 Pichia stipitis CBS 6054 predicted protein XP_001384466.2 859663 R 322104 CDS PICST_83076 150865310 4839045 complement(join(863772..864652,864689..865160,865182..865241)) 1 NC_009044.1 predicted protein 865241 4839045 PICST_83076 Pichia stipitis CBS 6054 predicted protein XP_001384467.2 863772 R 322104 CDS PICST_77736 126135888 4839046 complement(866116..870528) 1 NC_009044.1 Opaque-specific ABC transporter CDR3 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily; go_component: membrane; go_function: ATP binding; go_process: transport; Opaque-specific ABC transporter CDR3 870528 CDR3 4839046 CDR3 Pichia stipitis CBS 6054 Opaque-specific ABC transporter CDR3 XP_001384468.1 866116 R 322104 CDS PICST_58118 150865063 4839047 873269..875905 1 NC_009044.1 go_component: membrane; predicted protein 875905 4839047 PICST_58118 Pichia stipitis CBS 6054 predicted protein XP_001384119.2 873269 D 322104 CDS PICST_44610 150865311 4838415 complement(875907..877688) 1 NC_009044.1 go_component: nucleus; go_function: damaged DNA binding; go_process: nucleotide-excision repair; predicted protein 877688 4838415 PICST_44610 Pichia stipitis CBS 6054 predicted protein XP_001384469.2 875907 R 322104 CDS PICST_31465 126135892 4839048 complement(878339..878749) 1 NC_009044.1 predicted protein 878749 4839048 PICST_31465 Pichia stipitis CBS 6054 predicted protein XP_001384470.1 878339 R 322104 CDS PICST_58818 126135192 4839049 join(879636..879780,879805..>880133) 1 NC_009044.1 MFS transporter 879780 MFS41 4839049 MFS41 Pichia stipitis CBS 6054 MFS transporter XP_001384120.1 879636 D 322104 CDS PICST_58666 150865064 4838416 <880203..881399 1 NC_009044.1 MFS transporter 881399 MFS42 4838416 MFS42 Pichia stipitis CBS 6054 MFS transporter XP_001384121.2 <880203 D 322104 CDS PICST_45501 150865312 4838417 complement(<881981..883198) 1 NC_009044.1 predicted protein 883198 4838417 PICST_45501 Pichia stipitis CBS 6054 predicted protein XP_001384471.2 <881981 R 322104 CDS PICST_31468 126135896 4839050 complement(884156..885181) 1 NC_009044.1 predicted protein 885181 4839050 PICST_31468 Pichia stipitis CBS 6054 predicted protein XP_001384472.1 884156 R 322104 CDS PICST_45914 126135898 4839051 complement(885571..886950) 1 NC_009044.1 predicted protein 886950 4839051 PICST_45914 Pichia stipitis CBS 6054 predicted protein XP_001384473.1 885571 R 322104 CDS PICST_31470 150865065 4839020 887354..888397 1 NC_009044.1 predicted protein 888397 4839020 PICST_31470 Pichia stipitis CBS 6054 predicted protein XP_001384122.2 887354 D 322104 CDS PICST_83509 126135900 4838418 complement(join(888848..889379,889401..889783)) 1 NC_009044.1 predicted protein 889783 4838418 PICST_83509 Pichia stipitis CBS 6054 predicted protein XP_001384474.1 888848 R 322104 CDS PICST_58482 150865313 4839021 complement(892797..>893927) 1 NC_009044.1 go_function: translation release factor activity; go_process: translational termination; predicted protein >893927 4839021 PICST_58482 Pichia stipitis CBS 6054 predicted protein XP_001384475.2 892797 R 322104 CDS PICST_67576 126135198 4839022 894644..895150 1 NC_009044.1 predicted protein 895150 4839022 PICST_67576 Pichia stipitis CBS 6054 predicted protein XP_001384123.1 894644 D 322104 CDS PICST_31474 150865314 4838419 complement(895232..896581) 1 NC_009044.1 predicted protein 896581 4838419 PICST_31474 Pichia stipitis CBS 6054 predicted protein XP_001384476.2 895232 R 322104 CDS PICST_89414 150865066 4839023 897093..898361 1 NC_009044.1 predicted protein 898361 4839023 PICST_89414 Pichia stipitis CBS 6054 predicted protein XP_001384124.2 897093 D 322104 CDS PICST_31476 150865315 4838420 complement(898505..901039) 1 NC_009044.1 go_component: nuclear pore; go_process: transport; Nucleoporin NUP84 (Nuclear pore protein NUP84) 901039 NUP84 4838420 NUP84 Pichia stipitis CBS 6054 Nucleoporin NUP84 (Nuclear pore protein NUP84) XP_001384477.2 898505 R 322104 CDS PICST_31477 150865067 4839024 901647..903743 1 NC_009044.1 go_process: intracellular signaling cascade; predicted protein 903743 4839024 PICST_31477 Pichia stipitis CBS 6054 predicted protein XP_001384125.2 901647 D 322104 CDS PICST_58975 150865316 4838421 complement(join(903957..905082,905134..905198)) 1 NC_009044.1 predicted protein 905198 4838421 PICST_58975 Pichia stipitis CBS 6054 predicted protein XP_001384478.2 903957 R 322104 CDS PICST_89181 126135204 4839025 join(905995..906019,906483..907804) 1 NC_009044.1 go_component: tubulin; go_function: GTPase activity; GTP binding; go_process: microtubule polymerization; Tubulin alpha chain 907804 TUB1 4839025 TUB1 Pichia stipitis CBS 6054 Tubulin alpha chain XP_001384126.1 905995 D 322104 CDS PICST_45522 126135206 4838422 908782..909672 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; NADH-cytochrome b-5 reductase 909672 CBR3 4838422 CBR3 Pichia stipitis CBS 6054 NADH-cytochrome b-5 reductase XP_001384127.1 908782 D 322104 CDS PICST_59193 126135208 4838470 910657..911703 1 NC_009044.1 Pyridoxal reductase (PL reductase) (PL-red); Pyridoxine 4-dehydrogenase 911703 PLR1 4838470 PLR1 Pichia stipitis CBS 6054 Pyridoxine 4-dehydrogenase XP_001384128.1 910657 D 322104 CDS PICST_31482 150865068 4838471 912427..913887 1 NC_009044.1 predicted protein 913887 4838471 PICST_31482 Pichia stipitis CBS 6054 predicted protein XP_001384129.2 912427 D 322104 CDS PICST_44547 150865317 4838472 complement(914044..>914541) 1 NC_009044.1 go_function: calcium ion binding; predicted protein >914541 4838472 PICST_44547 Pichia stipitis CBS 6054 predicted protein XP_001384479.2 914044 R 322104 CDS PICST_58217 126135912 4839026 complement(join(916386..917876,917901..918032)) 1 NC_009044.1 multidrug resistance protein 2 918032 MDR12 4839026 MDR12 Pichia stipitis CBS 6054 multidrug resistance protein 2 XP_001384480.1 916386 R 322104 CDS PICST_31485 150865318 4838659 complement(920069..922000) 1 NC_009044.1 predicted protein 922000 4838659 PICST_31485 Pichia stipitis CBS 6054 predicted protein XP_001384481.2 920069 R 322104 CDS PICST_65597 150865069 4838660 join(923346..923365,924047..924155,924183..924368,924402..926966) 1 NC_009044.1 go_function: chitin synthase activity; go_process: chitin biosynthesis; chitin synthase 2 926966 CHS2 4838660 CHS2 Pichia stipitis CBS 6054 chitin synthase 2 XP_001384130.2 923346 D 322104 CDS PICST_59680 126135214 4838473 927585..928736 1 NC_009044.1 go_process: amino acid metabolism; predicted protein 928736 4838473 PICST_59680 Pichia stipitis CBS 6054 predicted protein XP_001384131.1 927585 D 322104 CDS PICST_59156 126135216 4838474 929220..930287 1 NC_009044.1 go_function: deaminase activity; go_process: purine ribonucleoside monophosphate biosynthesis; adenine aminohydrolase (adenine deaminase) 930287 AAH1 4838474 AAH1 Pichia stipitis CBS 6054 adenine aminohydrolase (adenine deaminase) XP_001384132.1 929220 D 322104 CDS PICST_59528 150865319 4838475 complement(930516..>931832) 1 NC_009044.1 predicted protein >931832 4838475 PICST_59528 Pichia stipitis CBS 6054 predicted protein XP_001384482.2 930516 R 322104 CDS PICST_4493 150865320 4838661 complement(<934969..>936315) 1 NC_009044.1 go_function: subtilase activity; go_process: proteolysis and peptidolysis; predicted protein >936315 4838661 PICST_4493 Pichia stipitis CBS 6054 predicted protein XP_001384483.2 <934969 R 322104 CDS PICST_35930 150865070 4838662 937541..938545 1 NC_009044.1 go_component: nucleus; cytoplasm; predicted protein 938545 4838662 PICST_35930 Pichia stipitis CBS 6054 predicted protein XP_001384133.2 937541 D 322104 CDS PICST_83429 126135220 4838447 939007..940353 1 NC_009044.1 Farnesyl-diphosphate farnesyltransferase (Squalene synthetase) (SQS) (SS) (FPP:FPP farnesyltransferase); go_function: transferase activity; go_process: biosynthesis; farnesyl-diphosphate farnesyltransferase 940353 ERG9 4838447 ERG9 Pichia stipitis CBS 6054 farnesyl-diphosphate farnesyltransferase XP_001384134.1 939007 D 322104 CDS PICST_58602 150865071 4838448 941250..>942386 1 NC_009044.1 predicted protein >942386 4838448 PICST_58602 Pichia stipitis CBS 6054 predicted protein XP_001384135.2 941250 D 322104 CDS PICST_45484 150865321 4838449 complement(942754..944124) 1 NC_009044.1 predicted protein 944124 4838449 PICST_45484 Pichia stipitis CBS 6054 predicted protein XP_001384484.2 942754 R 322104 CDS PICST_31495 126135922 4838663 complement(944347..944952) 1 NC_009044.1 predicted protein 944952 4838663 PICST_31495 Pichia stipitis CBS 6054 predicted protein XP_001384485.1 944347 R 322104 CDS PICST_44845 126135924 4838664 complement(945740..946348) 1 NC_009044.1 predicted protein 946348 4838664 PICST_44845 Pichia stipitis CBS 6054 predicted protein XP_001384486.1 945740 R 322104 CDS PICST_72069 150865072 4838665 948285..949847 1 NC_009044.1 putative MFS allantoate transporter 949847 DAL7 4838665 DAL7 Pichia stipitis CBS 6054 putative MFS allantoate transporter XP_001384136.2 948285 D 322104 CDS PICST_31498 150865322 4838618 complement(949900..950820) 1 NC_009044.1 Aldo/keto reductase 950820 AKR2 4838618 AKR2 Pichia stipitis CBS 6054 Aldo/keto reductase XP_001384487.2 949900 R 322104 CDS PICST_59568 150865323 4838756 complement(951406..952365) 1 NC_009044.1 aldo/keto reductase; Protein with similarity to aldo-keto reductases 952365 AKR1 4838756 AKR1 Pichia stipitis CBS 6054 Protein with similarity to aldo-keto reductases XP_001384488.2 951406 R 322104 CDS PICST_67584 126135226 4838757 953244..953891 1 NC_009044.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 953891 4838757 PICST_67584 Pichia stipitis CBS 6054 predicted protein XP_001384137.1 953244 D 322104 CDS PICST_21863 126135930 4838619 complement(<954281..>954958) 1 NC_009044.1 go_function: damaged DNA binding; ATP binding; go_process: mismatch repair; predicted protein >954958 4838619 PICST_21863 Pichia stipitis CBS 6054 predicted protein XP_001384489.1 <954281 R 322104 CDS PICST_58441 150865324 4838758 complement(join(<955704..956303,956343..>957257)) 1 NC_009044.1 predicted protein 956303 4838758 PICST_58441 Pichia stipitis CBS 6054 predicted protein XP_001384490.2 <955704 R 322104 CDS PICST_77514 126135934 4838759 complement(958155..959531) 1 NC_009044.1 translational elongation factor EF-1 alpha (EF1A); go_component: cytoplasm; go_function: translation elongation factor activity; go_process: protein biosynthesis; translational elongation; translational elongation factor EF-1 alpha 959531 TEF3 4838759 TEF3 Pichia stipitis CBS 6054 translational elongation factor EF-1 alpha XP_001384491.1 958155 R 322104 CDS PICST_83141 150865325 4838760 complement(join(960161..960525,960580..961395,961441..961988,962019..962371)) 1 NC_009044.1 DNA polymerase II complex component Nucleotide excision repair factor NEF2, RAD4/CUT5 component; acts in a checkpoiint pathway during S-phase; go_component: intracellular; DNA polymerase II complex component 962371 DPB11 4838760 DPB11 Pichia stipitis CBS 6054 DNA polymerase II complex component XP_001384492.2 960161 R 322104 CDS PICST_45970 150865073 4838761 963504..964703 1 NC_009044.1 predicted protein 964703 4838761 PICST_45970 Pichia stipitis CBS 6054 predicted protein XP_001384138.2 963504 D 322104 CDS PICST_58778 150865074 4838620 <965476..966342 1 NC_009044.1 go_process: base-excision repair; 3-methyladenine DNA glycosylase 966342 MAG1 4838620 MAG1 Pichia stipitis CBS 6054 3-methyladenine DNA glycosylase XP_001384139.2 <965476 D 322104 CDS PICST_31507 150865326 4838621 complement(966339..967364) 1 NC_009044.1 predicted protein 967364 4838621 PICST_31507 Pichia stipitis CBS 6054 predicted protein XP_001384493.2 966339 R 322104 CDS PICST_67587 150865075 4838762 969972..973859 1 NC_009044.1 hypothetical serine rich protein 973859 4838762 PICST_67587 Pichia stipitis CBS 6054 hypothetical serine rich protein XP_001384140.2 969972 D 322104 CDS PICST_31509 150865327 4838622 complement(973982..974428) 1 NC_009044.1 go_function: carrier activity; steroid binding; go_process: transport; predicted protein 974428 4838622 PICST_31509 Pichia stipitis CBS 6054 predicted protein XP_001384494.2 973982 R 322104 CDS PICST_45668 150865328 4839006 complement(974620..976056) 1 NC_009044.1 predicted protein 976056 4839006 PICST_45668 Pichia stipitis CBS 6054 predicted protein XP_001384495.2 974620 R 322104 CDS PICST_44458 150865076 4839007 976398..977663 1 NC_009044.1 predicted protein 977663 4839007 PICST_44458 Pichia stipitis CBS 6054 predicted protein XP_001384141.2 976398 D 322104 CDS PICST_58162 126135236 4838623 join(978361..980019,980071..980154,980239..980466) 1 NC_009044.1 predicted protein 980466 4838623 PICST_58162 Pichia stipitis CBS 6054 predicted protein XP_001384142.1 978361 D 322104 CDS PICST_65602 150865077 4838624 join(981581..982007,982068..983971) 1 NC_009044.1 go_component: intracellular; go_function: ubiquitin-protein ligase activity; go_process: protein modification; ubiquitin cycle; predicted protein 983971 4838624 PICST_65602 Pichia stipitis CBS 6054 predicted protein XP_001384143.2 981581 D 322104 CDS PICST_45036 126135240 4838488 <985498..>987063 1 NC_009044.1 go_component: membrane; go_process: transport; high affinity methionine permease >987063 MUP1.2 4838488 MUP1.2 Pichia stipitis CBS 6054 high affinity methionine permease XP_001384144.1 <985498 D 322104 CDS PICST_31515 150865329 4838489 complement(989398..991734) 1 NC_009044.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 991734 4838489 PICST_31515 Pichia stipitis CBS 6054 predicted protein XP_001384496.2 989398 R 322104 CDS PICST_89119 150865330 4839008 complement(join(992520..992650,992711..993932)) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; casein kinase I 993932 YCK1 4839008 YCK1 Pichia stipitis CBS 6054 casein kinase I XP_001384497.2 992520 R 322104 CDS PICST_83546 126135948 4839009 complement(996536..997138) 1 NC_009044.1 predicted protein 997138 4839009 PICST_83546 Pichia stipitis CBS 6054 predicted protein XP_001384498.1 996536 R 322104 CDS PICST_83663 126135242 4839010 998989..999537 1 NC_009044.1 go_component: mitochondrial inner membrane presequence translocase complex; go_function: protein translocase activity; go_process: protein transport; predicted protein 999537 4839010 PICST_83663 Pichia stipitis CBS 6054 predicted protein XP_001384145.1 998989 D 322104 CDS PICST_31520 150865331 4838490 complement(999664..1000386) 1 NC_009044.1 predicted protein 1000386 4838490 PICST_31520 Pichia stipitis CBS 6054 predicted protein XP_001384499.2 999664 R 322104 CDS PICST_31521 150865078 4839011 1003139..1004116 1 NC_009044.1 predicted protein 1004116 4839011 PICST_31521 Pichia stipitis CBS 6054 predicted protein XP_001384146.2 1003139 D 322104 CDS PICST_35948 150865079 4838491 join(1004529..1004569,1004618..1006556) 1 NC_009044.1 glucosamine 6-phosphate synthetase and asparagine synthase-like protein 1006556 4838491 PICST_35948 Pichia stipitis CBS 6054 glucosamine 6-phosphate synthetase and asparagine synthase-like protein XP_001384147.2 1004529 D 322104 CDS PICST_31523 150865332 4838492 complement(1006692..1007408) 1 NC_009044.1 go_function: catalytic activity; predicted protein 1007408 4838492 PICST_31523 Pichia stipitis CBS 6054 predicted protein XP_001384500.2 1006692 R 322104 CDS PICST_72172 126135954 4838370 complement(1007904..1008731) 1 NC_009044.1 predicted protein 1008731 4838370 PICST_72172 Pichia stipitis CBS 6054 predicted protein XP_001384501.1 1007904 R 322104 CDS PICST_58102 150865333 4838371 complement(1009512..1010633) 1 NC_009044.1 go_component: proton-transporting two-sector ATPase complex; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; go_process: ATP synthesis coupled proton transport; Vacuolar ATP synthase subunit C (V-ATPase C subunit) (Vacuolar proton pump C subunit) (V-ATPase 42 kDa subunit) 1010633 VMA5 4838371 VMA5 Pichia stipitis CBS 6054 Vacuolar ATP synthase subunit C (V-ATPase C subunit) (Vacuolar proton pump C subunit) (V-ATPase 42 kDa subunit) XP_001384502.2 1009512 R 322104 CDS PICST_35951 150865080 4838372 1011423..1012535 1 NC_009044.1 predicted protein 1012535 4838372 PICST_35951 Pichia stipitis CBS 6054 predicted protein XP_001384148.2 1011423 D 322104 CDS PICST_35952 126135250 4838493 join(1013138..1013188,1013254..1013736) 1 NC_009044.1 predicted protein 1013736 4838493 PICST_35952 Pichia stipitis CBS 6054 predicted protein XP_001384149.1 1013138 D 322104 CDS PICST_72010 126135958 4838494 complement(1014777..1017464) 1 NC_009044.1 go_component: membrane; predicted protein 1017464 4838494 PICST_72010 Pichia stipitis CBS 6054 predicted protein XP_001384503.1 1014777 R 322104 CDS PICST_31529 150865081 4838373 1018781..1019728 1 NC_009044.1 predicted protein 1019728 4838373 PICST_31529 Pichia stipitis CBS 6054 predicted protein XP_001384150.2 1018781 D 322104 CDS PICST_45170 150865334 4838495 complement(<1020059..1020574) 1 NC_009044.1 predicted protein 1020574 4838495 PICST_45170 Pichia stipitis CBS 6054 predicted protein XP_001384504.2 <1020059 R 322104 CDS PICST_31531 150865082 4838374 1021260..1022504 1 NC_009044.1 predicted protein 1022504 4838374 PICST_31531 Pichia stipitis CBS 6054 predicted protein XP_001384151.2 1021260 D 322104 CDS PICST_83097 126135256 4838496 1022670..1023533 1 NC_009044.1 go_component: membrane; go_function: pyrophosphatase activity; go_process: metabolism; Inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase) 1023533 IPP1 4838496 IPP1 Pichia stipitis CBS 6054 Inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase) XP_001384152.1 1022670 D 322104 CDS PICST_45688 126135258 4838497 1023936..1025048 1 NC_009044.1 go_function: disulfide oxidoreductase activity; go_process: electron transport; predicted protein 1025048 4838497 PICST_45688 Pichia stipitis CBS 6054 predicted protein XP_001384153.1 1023936 D 322104 CDS PICST_58642 150865083 4838498 1025189..1026814 1 NC_009044.1 predicted protein 1026814 4838498 PICST_58642 Pichia stipitis CBS 6054 predicted protein XP_001384154.2 1025189 D 322104 CDS PICST_45385 150865084 4838499 <1027170..1028342 1 NC_009044.1 predicted protein 1028342 4838499 PICST_45385 Pichia stipitis CBS 6054 predicted protein XP_001384155.2 <1027170 D 322104 CDS PICST_59505 126135264 4838500 1028692..1029672 1 NC_009044.1 D-arabinose dehydrogenase 1029672 ARA1 4838500 ARA1 Pichia stipitis CBS 6054 D-arabinose dehydrogenase XP_001384156.1 1028692 D 322104 CDS PICST_58121 126135962 4838501 complement(1029708..1030955) 1 NC_009044.1 go_function: oxidoreductase activity; FAD binding; go_process: tRNA processing; predicted protein 1030955 4838501 PICST_58121 Pichia stipitis CBS 6054 predicted protein XP_001384505.1 1029708 R 322104 CDS PICST_31542 150865335 4838375 complement(join(1057833..1057894,1057951..1058415,1058450..1058492,1058755..1058796,1058900..1058905)) 1 NC_009044.1 predicted protein 1058905 4838375 PICST_31542 Pichia stipitis CBS 6054 predicted protein XP_001384506.2 1057833 R 322104 CDS PICST_10382 150865336 4838376 complement(join(<1066590..1066768,1066814..1068760,1069109..>1069412)) 1 NC_009044.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1068760 4838376 PICST_10382 Pichia stipitis CBS 6054 predicted protein XP_001384507.2 <1066590 R 322104 CDS PICST_58454 150865337 4838521 complement(1071461..1073890) 1 NC_009044.1 go_function: ATP binding; go_process: mismatch repair; predicted protein 1073890 4838521 PICST_58454 Pichia stipitis CBS 6054 predicted protein XP_001384508.2 1071461 R 322104 CDS PICST_35960 150865085 4838522 1073996..1074727 1 NC_009044.1 hypothetical protein 1074727 4838522 PICST_35960 Pichia stipitis CBS 6054 hypothetical protein XP_001384157.2 1073996 D 322104 CDS PICST_31546 126135970 4838508 complement(1074761..1076401) 1 NC_009044.1 go_component: membrane; go_function: calcium ion binding; binding; go_process: transport; predicted protein 1076401 4838508 PICST_31546 Pichia stipitis CBS 6054 predicted protein XP_001384509.1 1074761 R 322104 CDS PICST_89309 150865086 4838523 1077252..1078832 1 NC_009044.1 predicted protein 1078832 4838523 PICST_89309 Pichia stipitis CBS 6054 predicted protein XP_001384158.2 1077252 D 322104 CDS PICST_31548 126135270 4838509 1080056..1080631 1 NC_009044.1 tress protein (DNA damage-responsive protein 48) (DDRP 48) (YP 75) (Flocculent specific protein) 1080631 DDR48 4838509 DDR48 Pichia stipitis CBS 6054 tress protein (DNA damage-responsive protein 48) (DDRP 48) (YP 75) (Flocculent specific protein) XP_001384159.1 1080056 D 322104 CDS PICST_58903 150865338 4838510 complement(join(<1081065..1081511,1081566..>1081865)) 1 NC_009044.1 Protein involved in Snf1 protein kinase complex assembly cAMP-activated protein kinase; Glucose repression protein GAL83 (SPM1 protein) 1081511 GAL83 4838510 GAL83 Pichia stipitis CBS 6054 Glucose repression protein GAL83 (SPM1 protein) XP_001384510.2 <1081065 R 322104 CDS PICST_31550 150865087 4838524 1084081..1084749 1 NC_009044.1 predicted protein 1084749 4838524 PICST_31550 Pichia stipitis CBS 6054 predicted protein XP_001384160.2 1084081 D 322104 CDS PICST_44738 150865088 4838511 1085271..1085966 1 NC_009044.1 predicted protein 1085966 4838511 PICST_44738 Pichia stipitis CBS 6054 predicted protein XP_001384161.2 1085271 D 322104 CDS PICST_31552 150865089 4838512 1086330..1087517 1 NC_009044.1 predicted protein 1087517 4838512 PICST_31552 Pichia stipitis CBS 6054 predicted protein XP_001384162.2 1086330 D 322104 CDS PICST_11238 150865090 4838513 join(1088553..1088681,1088952..1089438,1089514..>1090406) 1 NC_009044.1 predicted protein 1089438 4838513 PICST_11238 Pichia stipitis CBS 6054 predicted protein XP_001384163.2 1088553 D 322104 CDS PICST_31554 150865091 4838514 join(1090925..1092611,1092703..1092956,1093002..1093421) 1 NC_009044.1 Maintenance of Genome Stability 1 replication factor ATPase; go_function: ATP binding; replication factor ATPase 1093421 MGS2 4838514 MGS2 Pichia stipitis CBS 6054 replication factor ATPase XP_001384164.2 1090925 D 322104 CDS PICST_17868 126135974 4838515 complement(<1093903..>1094997) 1 NC_009044.1 go_function: RNA binding; go_process: protein biosynthesis; Eukaryotic initiation factor 4F subunit p150 (eIF4F p150) (eIF-4F p150) (mRNA cap-binding protein complex subunit p150) >1094997 IF4F1 4838515 IF4F1 Pichia stipitis CBS 6054 Eukaryotic initiation factor 4F subunit p150 (eIF4F p150) (eIF-4F p150) (mRNA cap-binding protein complex subunit p150) XP_001384511.1 <1093903 R 322104 CDS PICST_67602 126135976 4838525 complement(<1095166..1096776) 1 NC_009044.1 Eukaryotic initiation factor 4F subunit p150 (eIF4F p150) (eIF-4F p150) (mRNA cap-binding protein complex subunit p150); mRNA cap binding protein eIF 4F 1096776 TIF4631 4838525 TIF4631 Pichia stipitis CBS 6054 mRNA cap binding protein eIF 4F XP_001384512.1 <1095166 R 322104 CDS PICST_58749 150865339 4838526 complement(1098140..1098481) 1 NC_009044.1 predicted protein 1098481 4838526 PICST_58749 Pichia stipitis CBS 6054 predicted protein XP_001384513.2 1098140 R 322104 CDS PICST_71824 126135282 4838527 1105073..1106281 1 NC_009044.1 go_function: ATP binding; protease regulatory subunit 8 homolog (SUG1 protein) (CIM3 protein) (TAT-binding protein TBY1) 1106281 RPT6 4838527 RPT6 Pichia stipitis CBS 6054 protease regulatory subunit 8 homolog (SUG1 protein) (CIM3 protein) (TAT-binding protein TBY1) XP_001384165.1 1105073 D 322104 CDS PICST_89325 150865092 4838647 1106718..1108652 1 NC_009044.1 Molecular chaperone (DnaJ superfamily) DnaJ-like protein of the endoplasmic reticulum membrane; Molecular chaperone (DnaJ superfamily) 1108652 JEM1 4838647 JEM1 Pichia stipitis CBS 6054 Molecular chaperone (DnaJ superfamily) XP_001384166.2 1106718 D 322104 CDS PICST_89245 150865093 4838648 1109462..1111063 1 NC_009044.1 similar to related proteins containing the protease-associated (PA) domain; go_function: peptidase activity; go_process: proteolysis and peptidolysis; Aminopeptidase yscIII Transferrin receptor 1111063 APE3.1 4838648 APE3.1 Pichia stipitis CBS 6054 Aminopeptidase yscIII Transferrin receptor XP_001384167.2 1109462 D 322104 CDS PICST_31562 126135288 4838649 1112002..1113063 1 NC_009044.1 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily); go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; go_process: L-serine biosynthesis; alpha-ketoisocaproate reductase or hydroxyisocaproate dehydrogenase 1113063 MDH97 4838649 MDH97 Pichia stipitis CBS 6054 alpha-ketoisocaproate reductase or hydroxyisocaproate dehydrogenase XP_001384168.1 1112002 D 322104 CDS PICST_83443 150865094 4838650 1115156..1116127 1 NC_009044.1 go_component: membrane; go_function: binding; go_process: transport; RNA splicing protein and member of the mitochondrial carrier family (MCF) 1116127 MRS4 4838650 MRS4 Pichia stipitis CBS 6054 RNA splicing protein and member of the mitochondrial carrier family (MCF) XP_001384169.2 1115156 D 322104 CDS PICST_31564 150865340 4838651 complement(join(1118160..1118799,1118884..1119380)) 1 NC_009044.1 go_function: calcium ion binding; predicted protein 1119380 4838651 PICST_31564 Pichia stipitis CBS 6054 predicted protein XP_001384514.2 1118160 R 322104 CDS PICST_31565 126135982 4838528 complement(join(1120230..1120543,1121070..1121121)) 1 NC_009044.1 predicted protein 1121121 4838528 PICST_31565 Pichia stipitis CBS 6054 predicted protein XP_001384515.1 1120230 R 322104 CDS PICST_77439 126135984 4838529 complement(1121817..1123664) 1 NC_009044.1 iron-siderophore transporter 1123664 ARN1 4838529 ARN1 Pichia stipitis CBS 6054 iron-siderophore transporter XP_001384516.1 1121817 R 322104 CDS PICST_44887 150865341 4838530 complement(join(1125180..1128406,1128626..1131632)) 1 NC_009044.1 predicted protein 1131632 4838530 PICST_44887 Pichia stipitis CBS 6054 predicted protein XP_001384517.2 1125180 R 322104 CDS PICST_89162 126135292 4838531 1133078..1134907 1 NC_009044.1 Predicted transporter (ABC superfamily); go_component: membrane; go_function: ATP binding; go_process: transport; ABC transporter 1134907 KRE30 4838531 KRE30 Pichia stipitis CBS 6054 ABC transporter XP_001384170.1 1133078 D 322104 CDS PICST_67610 150865095 4838652 1135329..1138310 1 NC_009044.1 predicted protein 1138310 4838652 PICST_67610 Pichia stipitis CBS 6054 predicted protein XP_001384171.2 1135329 D 322104 CDS PICST_72128 150865342 4838931 complement(1143463..1144473) 1 NC_009044.1 predicted protein 1144473 4838931 PICST_72128 Pichia stipitis CBS 6054 predicted protein XP_001384518.2 1143463 R 322104 CDS PICST_26415 150865343 4838532 complement(<1144996..>1145781) 1 NC_009044.1 predicted protein >1145781 4838532 PICST_26415 Pichia stipitis CBS 6054 predicted protein XP_001384519.2 <1144996 R 322104 CDS PICST_31573 126135992 4838533 complement(1146582..1148108) 1 NC_009044.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; permease involved in the uptake of glycerophosphoinositol (GroPIns) 1148108 GIT1 4838533 GIT1 Pichia stipitis CBS 6054 permease involved in the uptake of glycerophosphoinositol (GroPIns) XP_001384520.1 1146582 R 322104 CDS PICST_77762 150865096 4838611 join(1152256..1153407,1153435..1153462,1153613..1154407,1154534..1155145,1155179..1155909) 1 NC_009044.1 Serine Kinase that phosphoryates SR family splicing factors SRPK1-like Kinase in Yeast (SRPK1 is a human serine kinase that specifically phosphoryates arginine-serine rich domains found in the SR family of splicing factors.); go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine kinase that phosphoryates SR family splicing factors 1155909 SKY2 4838611 SKY2 Pichia stipitis CBS 6054 serine kinase that phosphoryates SR family splicing factors XP_001384172.2 1152256 D 322104 CDS PICST_35975 150865344 4838932 complement(join(1156138..1156338,1156459..1157136)) 1 NC_009044.1 go_process: protein folding; predicted protein 1157136 4838932 PICST_35975 Pichia stipitis CBS 6054 predicted protein XP_001384521.2 1156138 R 322104 CDS PICST_58506 126135298 4838612 <1158001..1158390 1 NC_009044.1 NADH-ubiquinone oxidoreductase 1158390 NUO13 4838612 NUO13 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase XP_001384173.1 <1158001 D 322104 CDS PICST_67615 150865097 4838933 1159236..1161353 1 NC_009044.1 predicted protein 1161353 4838933 PICST_67615 Pichia stipitis CBS 6054 predicted protein XP_001384174.2 1159236 D 322104 CDS PICST_65617 150865098 4838934 1161502..1162476 1 NC_009044.1 predicted protein 1162476 4838934 PICST_65617 Pichia stipitis CBS 6054 predicted protein XP_001384175.2 1161502 D 322104 CDS PICST_77854 150865345 4838935 complement(1162719..1163822) 1 NC_009044.1 may regulate cation conductance may link integral membrane proteins to the peripheral cytoskeleton; stomatin family protein 1163822 STM2 4838935 STM2 Pichia stipitis CBS 6054 stomatin family protein XP_001384522.2 1162719 R 322104 CDS PICST_59559 150865099 4838613 1164437..1165360 1 NC_009044.1 go_function: 3'-5'-exoribonuclease activity; RNA binding; go_process: RNA processing; predicted protein 1165360 4838613 PICST_59559 Pichia stipitis CBS 6054 predicted protein XP_001384176.2 1164437 D 322104 CDS PICST_83423 150865346 4838936 complement(join(1165612..1165875,1165960..1166913)) 1 NC_009044.1 predicted protein 1166913 4838936 PICST_83423 Pichia stipitis CBS 6054 predicted protein XP_001384523.2 1165612 R 322104 CDS PICST_59314 150865347 4838614 complement(join(1170042..1170602,1170618..1172492)) 1 NC_009044.1 go_function: acyltransferase activity; go_process: metabolism; predicted protein 1172492 4838614 PICST_59314 Pichia stipitis CBS 6054 predicted protein XP_001384524.2 1170042 R 322104 CDS PICST_31583 150865348 4838615 complement(1173990..1175828) 1 NC_009044.1 go_process: electron transport; mitochondrial D-lactate ferricytochrome c oxidoreductase 1175828 DLD3 4838615 DLD3 Pichia stipitis CBS 6054 mitochondrial D-lactate ferricytochrome c oxidoreductase XP_001384525.2 1173990 R 322104 CDS PICST_83457 150865100 4838616 join(1176897..1178828,1178874..1180268) 1 NC_009044.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 1180268 4838616 PICST_83457 Pichia stipitis CBS 6054 predicted protein XP_001384177.2 1176897 D 322104 CDS PICST_59569 150865101 4838937 join(<1183351..1183665,1183720..1184557,1184579..1184780,1184907..1185000) 1 NC_009044.1 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain 1185000 STB3 4838937 STB3 Pichia stipitis CBS 6054 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain XP_001384178.2 <1183351 D 322104 CDS PICST_83251 126135310 4838716 1185896..1188283 1 NC_009044.1 DNA replication licensing factor CDC47 (minichromosome maintenance protein) (Cell division control protein 47); go_function: DNA binding; ATP binding; DNA-dependent ATPase activity; go_process: DNA replication initiation; DNA helicase and DNA replication licensing factor (CDC47) 1188283 MCM7 4838716 MCM7 Pichia stipitis CBS 6054 DNA helicase and DNA replication licensing factor (CDC47) XP_001384179.1 1185896 D 322104 CDS PICST_59170 126135312 4838717 join(1189220..1189330,1189352..1189591) 1 NC_009044.1 predicted protein 1189591 4838717 PICST_59170 Pichia stipitis CBS 6054 predicted protein XP_001384180.1 1189220 D 322104 CDS PICST_22536 126135314 4838718 join(1190015..1190266,1190294..>1190473) 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; predicted protein 1190266 4838718 PICST_22536 Pichia stipitis CBS 6054 predicted protein XP_001384181.1 1190015 D 322104 CDS PICST_31589 150865349 4838719 complement(1190898..1192598) 1 NC_009044.1 predicted protein 1192598 4838719 PICST_31589 Pichia stipitis CBS 6054 predicted protein XP_001384526.2 1190898 R 322104 CDS PICST_77752 150865102 4838617 1194021..1196693 1 NC_009044.1 go_function: membrane alanyl aminopeptidase activity; go_process: proteolysis and peptidolysis; arginine/alanine aminopeptidase 1196693 AAP1 4838617 AAP1 Pichia stipitis CBS 6054 arginine/alanine aminopeptidase XP_001384182.2 1194021 D 322104 CDS PICST_83540 126136006 4838720 complement(1196881..1198602) 1 NC_009044.1 go_function: asparagine synthase (glutamine-hydrolyzing) activity; go_process: metabolism; asparagine biosynthesis; asparagine synthetase 1198602 ASN1 4838720 ASN1 Pichia stipitis CBS 6054 asparagine synthetase XP_001384527.1 1196881 R 322104 CDS PICST_31592 150865103 4838433 1199684..1200601 1 NC_009044.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein; possible roles in filamentous growth, cell polarity, and cellular elongation 1200601 DFG10 4838433 DFG10 Pichia stipitis CBS 6054 possible roles in filamentous growth, cell polarity, and cellular elongation XP_001384183.2 1199684 D 322104 CDS PICST_58324 150865104 4838721 join(1201219..1201311,1201448..1202260,1202285..1202737) 1 NC_009044.1 predicted protein 1202737 4838721 PICST_58324 Pichia stipitis CBS 6054 predicted protein XP_001384184.2 1201219 D 322104 CDS PICST_44707 126136008 4838722 complement(<1203221..1203712) 1 NC_009044.1 go_function: DNA binding; methyltransferase activity; zinc ion binding; go_process: DNA repair; regulation of transcription, DNA-dependent; probable zinc finger protein 1203712 ADA1 4838722 ADA1 Pichia stipitis CBS 6054 probable zinc finger protein XP_001384528.1 <1203221 R 322104 CDS PICST_59512 150865105 4838434 join(1204829..1205095,1205132..1205665) 1 NC_009044.1 predicted protein 1205665 4838434 PICST_59512 Pichia stipitis CBS 6054 predicted protein XP_001384185.2 1204829 D 322104 CDS PICST_83198 150865350 4838723 complement(1205885..1206718) 1 NC_009044.1 go_component: proteasome regulatory particle (sensu Eukaryota); go_process: proteolysis and peptidolysis; predicted protein 1206718 4838723 PICST_83198 Pichia stipitis CBS 6054 predicted protein XP_001384529.2 1205885 R 322104 CDS PICST_44648 126135324 4838435 1207425..1207814 1 NC_009044.1 predicted protein 1207814 4838435 PICST_44648 Pichia stipitis CBS 6054 predicted protein XP_001384186.1 1207425 D 322104 CDS PICST_77777 150865106 4838724 join(1209129..1209846,1209862..1210198,1210241..1211810) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1211810 4838724 PICST_77777 Pichia stipitis CBS 6054 predicted protein XP_001384187.2 1209129 D 322104 CDS PICST_35989 126136012 4838725 complement(join(1212268..1212652,1212700..1212701,1212757..1213221)) 1 NC_009044.1 predicted protein 1213221 4838725 PICST_35989 Pichia stipitis CBS 6054 predicted protein XP_001384530.1 1212268 R 322104 CDS PICST_67626 150865107 4838436 1219297..1220928 1 NC_009044.1 zf-BED BED zinc finger; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zinc finger protein 1220928 BED1.1 4838436 BED1.1 Pichia stipitis CBS 6054 zinc finger protein XP_001384188.2 1219297 D 322104 CDS PICST_59544 126135330 4838726 1225941..1226117 1 NC_009044.1 predicted protein 1226117 4838726 PICST_59544 Pichia stipitis CBS 6054 predicted protein XP_001384189.1 1225941 D 322104 CDS PICST_59682 150865351 4838727 complement(join(1226742..1226812,1226852..1227052,1227095..1228196,1228223..1228272,1228331..1228574)) 1 NC_009044.1 predicted protein 1228574 4838727 PICST_59682 Pichia stipitis CBS 6054 predicted protein XP_001384531.2 1226742 R 322104 CDS PICST_65625 150865108 4838437 join(1230021..1230899,1230942..1231342,1231423..1231427,1231537..1231883) 1 NC_009044.1 TOR2 binding protein 1231883 AVO2 4838437 AVO2 Pichia stipitis CBS 6054 TOR2 binding protein XP_001384190.2 1230021 D 322104 CDS PICST_59113 150865109 4838728 <1232583..1235315 1 NC_009044.1 go_function: damaged DNA binding; ATP binding; go_process: mismatch repair; DNA metabolism; predicted protein 1235315 4838728 PICST_59113 Pichia stipitis CBS 6054 predicted protein XP_001384191.2 <1232583 D 322104 CDS PICST_44442 150865352 4838729 complement(join(1235325..1235693,1235775..1236737)) 1 NC_009044.1 predicted protein 1236737 4838729 PICST_44442 Pichia stipitis CBS 6054 predicted protein XP_001384532.2 1235325 R 322104 CDS PICST_45467 126136018 4838438 complement(1237674..1238108) 1 NC_009044.1 go_component: integral to membrane; go_function: molecular function unknown; predicted protein 1238108 4838438 PICST_45467 Pichia stipitis CBS 6054 predicted protein XP_001384533.1 1237674 R 322104 CDS PICST_31606 126135336 4838604 1238795..1240237 1 NC_009044.1 predicted protein 1240237 4838604 PICST_31606 Pichia stipitis CBS 6054 predicted protein XP_001384192.1 1238795 D 322104 CDS PICST_89256 150865110 4838730 join(1241899..1242366,1242484..1242849) 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1242849 4838730 PICST_89256 Pichia stipitis CBS 6054 predicted protein XP_001384193.2 1241899 D 322104 CDS PICST_72073 126135340 4838731 1245795..1247330 1 NC_009044.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; predicted protein 1247330 4838731 PICST_72073 Pichia stipitis CBS 6054 predicted protein XP_001384194.1 1245795 D 322104 CDS PICST_59274 150865353 4838732 complement(join(1247585..1247848,1247891..1248699,1248865..1249038,1249075..>1249216)) 1 NC_009044.1 predicted protein 1249038 4838732 PICST_59274 Pichia stipitis CBS 6054 predicted protein XP_001384534.2 1247585 R 322104 CDS PICST_83260 126135342 4838605 1249989..1250693 1 NC_009044.1 predicted protein 1250693 4838605 PICST_83260 Pichia stipitis CBS 6054 predicted protein XP_001384195.1 1249989 D 322104 CDS PICST_58872 150865111 4838733 join(1251438..1251887,1251942..1254569) 1 NC_009044.1 phosphatidylinositol phosphate 5-phosphatase; Inositol-1,4,5-triphosphate 5-phosphatase 1254569 INP51 4838733 INP51 Pichia stipitis CBS 6054 Inositol-1,4,5-triphosphate 5-phosphatase XP_001384196.2 1251438 D 322104 CDS PICST_58235 150865354 4838734 complement(<1254890..1255096) 1 NC_009044.1 predicted protein 1255096 4838734 PICST_58235 Pichia stipitis CBS 6054 predicted protein XP_001384535.2 <1254890 R 322104 CDS PICST_89189 150865355 4838606 complement(1255387..1257114) 1 NC_009044.1 Alpha-isopropylmalate synthase/homocitrate synthase 2-isopropylmalate synthase (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase); go_function: catalytic activity; Alpha-isopropylmalate synthase/homocitrate synthase (LEU4) 1257114 LEU6 4838606 LEU6 Pichia stipitis CBS 6054 Alpha-isopropylmalate synthase/homocitrate synthase (LEU4) XP_001384536.2 1255387 R 322104 CDS PICST_31613 126136026 4838607 complement(1258277..1259332) 1 NC_009044.1 aryl-alcohol dehydrogenases 1259332 AAD3 4838607 AAD3 Pichia stipitis CBS 6054 aryl-alcohol dehydrogenases XP_001384537.1 1258277 R 322104 CDS PICST_45972 126136028 4838608 complement(1261892..1262776) 1 NC_009044.1 predicted protein 1262776 4838608 PICST_45972 Pichia stipitis CBS 6054 predicted protein XP_001384538.1 1261892 R 322104 CDS PICST_83594 150865356 4838609 complement(join(1265659..1267586,1267653..1267848)) 1 NC_009044.1 go_function: GTP binding; go_process: protein biosynthesis; elongation release factor 1267848 ERF2 4838609 ERF2 Pichia stipitis CBS 6054 elongation release factor XP_001384539.2 1265659 R 322104 CDS PICST_45928 150865112 4838610 join(1268631..1269086,1269276..1270133) 1 NC_009044.1 predicted protein 1270133 4838610 PICST_45928 Pichia stipitis CBS 6054 predicted protein XP_001384197.2 1268631 D 322104 CDS PICST_44590 150865357 4838735 complement(join(1270283..1270819,1270895..1271362)) 1 NC_009044.1 golgi uridine diphosphate-N- acetylglucosamine transporter 1271362 YEA4 4838735 YEA4 Pichia stipitis CBS 6054 golgi uridine diphosphate-N- acetylglucosamine transporter XP_001384540.2 1270283 R 322104 CDS PICST_45674 150865113 4838534 1273565..>1274152 1 NC_009044.1 predicted protein >1274152 4838534 PICST_45674 Pichia stipitis CBS 6054 predicted protein XP_001384198.2 1273565 D 322104 CDS PICST_44918 150865358 4838768 complement(1276223..1276654) 1 NC_009044.1 predicted protein 1276654 4838768 PICST_44918 Pichia stipitis CBS 6054 predicted protein XP_001384541.2 1276223 R 322104 CDS PICST_36005 150865114 4838535 1277224..1278114 1 NC_009044.1 predicted protein 1278114 4838535 PICST_36005 Pichia stipitis CBS 6054 predicted protein XP_001384199.2 1277224 D 322104 CDS PICST_77674 150865359 4838769 complement(1278350..1278991) 1 NC_009044.1 predicted protein 1278991 4838769 PICST_77674 Pichia stipitis CBS 6054 predicted protein XP_001384542.2 1278350 R 322104 CDS PICST_45495 126136038 4838536 complement(<1280341..>1280805) 1 NC_009044.1 predicted protein >1280805 4838536 PICST_45495 Pichia stipitis CBS 6054 predicted protein XP_001384543.1 <1280341 R 322104 CDS PICST_72090 150865360 4838537 complement(1281719..1283038) 1 NC_009044.1 go_function: mannose-6-phosphate isomerase activity; zinc ion binding; go_process: carbohydrate metabolism; mannose-6-phosphate isomerase 1283038 PMI1 4838537 PMI1 Pichia stipitis CBS 6054 mannose-6-phosphate isomerase XP_001384544.2 1281719 R 322104 CDS PICST_45496 150865115 4838538 1283670..1284227 1 NC_009044.1 dynactin subunit P25 1284227 DCT25 4838538 DCT25 Pichia stipitis CBS 6054 dynactin subunit P25 XP_001384200.2 1283670 D 322104 CDS PICST_67636 150865361 4838770 complement(1284378..1286687) 1 NC_009044.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 1286687 4838770 PICST_67636 Pichia stipitis CBS 6054 predicted protein XP_001384545.2 1284378 R 322104 CDS PICST_45267 150865362 4838539 complement(1287612..1288739) 1 NC_009044.1 Mitochondrial FAD carrier protein; go_component: membrane; go_function: binding; go_process: transport; mitochondrial carrier protein 1288739 FLX2 4838539 FLX2 Pichia stipitis CBS 6054 mitochondrial carrier protein XP_001384546.2 1287612 R 322104 CDS PICST_36010 150865116 4838540 1289403..1289888 1 NC_009044.1 predicted protein 1289888 4838540 PICST_36010 Pichia stipitis CBS 6054 predicted protein XP_001384201.2 1289403 D 322104 CDS PICST_31629 126135356 4838771 1290470..1290955 1 NC_009044.1 predicted protein 1290955 4838771 PICST_31629 Pichia stipitis CBS 6054 predicted protein XP_001384202.1 1290470 D 322104 CDS PICST_59616 150865117 4838772 1291916..1292836 1 NC_009044.1 go_component: membrane; go_function: binding; go_process: transport; Mitochondrial phosphate carrier protein 2 (Phosphate transport protein 2) (PTP 2) (mPic 2) (Pi carrier isoform 2) 1292836 PIC2 4838772 PIC2 Pichia stipitis CBS 6054 Mitochondrial phosphate carrier protein 2 (Phosphate transport protein 2) (PTP 2) (mPic 2) (Pi carrier isoform 2) XP_001384203.2 1291916 D 322104 CDS PICST_83616 150865363 4838773 complement(join(1293229..1293416,1293495..1293879,1293907..1294446)) 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; zinc finger protein 1294446 AGE2 4838773 AGE2 Pichia stipitis CBS 6054 zinc finger protein XP_001384547.2 1293229 R 322104 CDS PICST_31632 126135360 4838709 1295968..1296462 1 NC_009044.1 Cytochrome B5 (Yong-Su Jin[2006-01-06 11:42:07]); outer mitochondrial membrane isoform 1296462 CYB4 4838709 CYB4 Pichia stipitis CBS 6054 outer mitochondrial membrane isoform XP_001384204.1 1295968 D 322104 CDS PICST_59093 150865118 4838774 join(<1299651..1300806,1301287..1301381) 1 NC_009044.1 predicted protein 1301381 4838774 PICST_59093 Pichia stipitis CBS 6054 predicted protein XP_001384205.2 <1299651 D 322104 CDS PICST_31634 126136048 4838775 complement(1303779..1304570) 1 NC_009044.1 repressed by TUP1 protein 1 1304570 RBT12 4838775 RBT12 Pichia stipitis CBS 6054 repressed by TUP1 protein 1 XP_001384548.1 1303779 R 322104 CDS PICST_67638 126136050 4838710 complement(1306384..1307565) 1 NC_009044.1 Fasciclin and related adhesion glycoproteins 1307565 YWP1 4838710 YWP1 Pichia stipitis CBS 6054 Fasciclin and related adhesion glycoproteins XP_001384549.1 1306384 R 322104 CDS PICST_77556 150865364 4838711 complement(1312509..1313888) 1 NC_009044.1 Mannan 8 Protein of the endoplasmic reticulum with a role in retention of glycosyltransferases in the Golgi, also involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol; Mannan polymerase II complex ANP1 subunit (M-Pol II subunit ANP1) (Aminonitrophenyl propanediol resistance protein) 1313888 ANP1 4838711 ANP1 Pichia stipitis CBS 6054 Mannan polymerase II complex ANP1 subunit (M-Pol II subunit ANP1) (Aminonitrophenyl propanediol resistance protein) XP_001384550.2 1312509 R 322104 CDS PICST_59451 150865365 4838712 complement(1315686..1319201) 1 NC_009044.1 go_component: nucleus; go_function: ATP binding; go_process: chromosome segregation; Chromosome segregation and condensation 1319201 SMC2 4838712 SMC2 Pichia stipitis CBS 6054 Chromosome segregation and condensation XP_001384551.2 1315686 R 322104 CDS PICST_83466 150865119 4838713 join(1319813..1321693,1321728..1321737,1321776..1323325) 1 NC_009044.1 essential for mitochondrial biogenesis; go_function: RNA binding; ribonuclease activity; 3'-5' RNA exonuclease complex component 1323325 MSU1 4838713 MSU1 Pichia stipitis CBS 6054 3'-5' RNA exonuclease complex component XP_001384206.2 1319813 D 322104 CDS PICST_31639 150865120 4838776 1324576..1326135 1 NC_009044.1 allantoate permease Permease of the major facilitator superfamily; allantoate permease 1326135 DAL8 4838776 DAL8 Pichia stipitis CBS 6054 allantoate permease XP_001384207.2 1324576 D 322104 CDS PICST_59345 126136056 4838777 complement(join(1326179..1326668,1326741..1327219)) 1 NC_009044.1 go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; low affinity zinc transporter 1327219 ZRT2.2 4838777 ZRT2.2 Pichia stipitis CBS 6054 low affinity zinc transporter XP_001384552.1 1326179 R 322104 CDS PICST_45492 150865121 4838714 join(1327849..1328512,1328783..1329039) 1 NC_009044.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1329039 4838714 PICST_45492 Pichia stipitis CBS 6054 predicted protein XP_001384208.2 1327849 D 322104 CDS PICST_89153 150865366 4838778 complement(1329147..1330664) 1 NC_009044.1 predicted protein 1330664 4838778 PICST_89153 Pichia stipitis CBS 6054 predicted protein XP_001384553.2 1329147 R 322104 CDS PICST_88844 126136060 4838715 complement(1331181..1332350) 1 NC_009044.1 ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance protein); go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S large subunit ribosomal protein L3.e 1332350 RPL3 4838715 RPL3 Pichia stipitis CBS 6054 60S large subunit ribosomal protein L3.e XP_001384554.1 1331181 R 322104 CDS PICST_36016 150865122 4839027 1339793..1341124 1 NC_009044.1 go_component: membrane; predicted protein 1341124 4839027 PICST_36016 Pichia stipitis CBS 6054 predicted protein XP_001384209.2 1339793 D 322104 CDS PICST_77906 150865367 4838779 complement(1341402..1342376) 1 NC_009044.1 predicted protein 1342376 4838779 PICST_77906 Pichia stipitis CBS 6054 predicted protein XP_001384555.2 1341402 R 322104 CDS PICST_58812 150865123 4839028 join(1343001..1343020,1343269..1343491) 1 NC_009044.1 predicted protein 1343491 4839028 PICST_58812 Pichia stipitis CBS 6054 predicted protein XP_001384210.2 1343001 D 322104 CDS PICST_83532 150865124 4838780 join(1343773..1344282,1344346..1344882) 1 NC_009044.1 predicted protein 1344882 4838780 PICST_83532 Pichia stipitis CBS 6054 predicted protein XP_001384211.2 1343773 D 322104 CDS PICST_59241 150865368 4838781 complement(1345058..>1345528) 1 NC_009044.1 predicted protein >1345528 4838781 PICST_59241 Pichia stipitis CBS 6054 predicted protein XP_001384556.2 1345058 R 322104 CDS PICST_71704 150865369 4839029 complement(1345918..1347732) 1 NC_009044.1 Required for rRNA processing required for essential steps leading to synthesis of 60S ribosomal subunits; present in purified ribosome assembly intermediates; go_component: intracellular; Nucleolar protein 1347732 NOP7 4839029 NOP7 Pichia stipitis CBS 6054 Nucleolar protein XP_001384557.2 1345918 R 322104 CDS PICST_31649 150865125 4839030 1348848..1349759 1 NC_009044.1 predicted protein 1349759 4839030 PICST_31649 Pichia stipitis CBS 6054 predicted protein XP_001384212.2 1348848 D 322104 CDS PICST_89421 150865126 4838847 1350044..1351276 1 NC_009044.1 predicted protein 1351276 4838847 PICST_89421 Pichia stipitis CBS 6054 predicted protein XP_001384213.2 1350044 D 322104 CDS PICST_31651 150865127 4838848 join(1351679..1352077,1352135..1354375) 1 NC_009044.1 predicted protein 1354375 4838848 PICST_31651 Pichia stipitis CBS 6054 predicted protein XP_001384214.2 1351679 D 322104 CDS PICST_31652 150865370 4838849 complement(1354481..1356613) 1 NC_009044.1 go_component: microtubule associated complex; go_function: motor activity; ATP binding; predicted protein 1356613 4838849 PICST_31652 Pichia stipitis CBS 6054 predicted protein XP_001384558.2 1354481 R 322104 CDS PICST_83688 126135382 4839031 join(1357394..1357442,1357467..1357978) 1 NC_009044.1 predicted protein 1357978 4839031 PICST_83688 Pichia stipitis CBS 6054 predicted protein XP_001384215.1 1357394 D 322104 CDS PICST_45095 126135384 4838850 1358641..1359942 1 NC_009044.1 conserved hypothetical membrane protein 1359942 4838850 PICST_45095 Pichia stipitis CBS 6054 conserved hypothetical membrane protein XP_001384216.1 1358641 D 322104 CDS PICST_58171 150865128 4838851 join(1360329..1361177,1361193..1361501) 1 NC_009044.1 predicted protein 1361501 4838851 PICST_58171 Pichia stipitis CBS 6054 predicted protein XP_001384217.2 1360329 D 322104 CDS PICST_31656 150865129 4838852 1362094..1362861 1 NC_009044.1 hydroxyacylglutathione hydrolase 1362861 GLO2 4838852 GLO2 Pichia stipitis CBS 6054 hydroxyacylglutathione hydrolase XP_001384218.2 1362094 D 322104 CDS PICST_58142 150865371 4838853 complement(join(1363112..1363509,1363600..>1363720)) 1 NC_009044.1 putative tyrosine phosphatase 1363509 SIW14.2 4838853 SIW14.2 Pichia stipitis CBS 6054 putative tyrosine phosphatase XP_001384559.2 1363112 R 322104 CDS PICST_83191 126135390 4838476 1364979..1365611 1 NC_009044.1 go_component: mitochondrial inner membrane presequence translocase complex; go_function: protein translocase activity; go_process: protein transport; mitochondrial import inner membrane translocase subunit TIM23 1365611 TIM23 4838476 TIM23 Pichia stipitis CBS 6054 mitochondrial import inner membrane translocase subunit TIM23 XP_001384219.1 1364979 D 322104 CDS PICST_72127 150865372 4838854 complement(1366029..1367201) 1 NC_009044.1 go_function: oxidoreductase activity; FAD binding; go_process: tRNA processing; predicted protein 1367201 4838854 PICST_72127 Pichia stipitis CBS 6054 predicted protein XP_001384560.2 1366029 R 322104 CDS PICST_65645 150865130 4838477 1370346..1371344 1 NC_009044.1 predicted protein 1371344 4838477 PICST_65645 Pichia stipitis CBS 6054 predicted protein XP_001384220.2 1370346 D 322104 CDS PICST_45061 150865373 4838855 complement(1371914..>1372816) 1 NC_009044.1 predicted protein >1372816 4838855 PICST_45061 Pichia stipitis CBS 6054 predicted protein XP_001384561.2 1371914 R 322104 CDS PICST_59500 150865374 4838478 complement(join(<1373699..1373938,1373972..1374520)) 1 NC_009044.1 go_component: chromosome, pericentric region; nucleus; go_process: cell cycle; mitosis; predicted protein 1374520 4838478 PICST_59500 Pichia stipitis CBS 6054 predicted protein XP_001384562.2 <1373699 R 322104 CDS PICST_44644 126135394 4838479 1374893..1375138 1 NC_009044.1 predicted protein 1375138 4838479 PICST_44644 Pichia stipitis CBS 6054 predicted protein XP_001384221.1 1374893 D 322104 CDS PICST_31664 150865375 4838856 complement(1375882..1377891) 1 NC_009044.1 predicted protein 1377891 4838856 PICST_31664 Pichia stipitis CBS 6054 predicted protein XP_001384563.2 1375882 R 322104 CDS PICST_44978 150865131 4838480 1382031..1383629 1 NC_009044.1 predicted protein 1383629 4838480 PICST_44978 Pichia stipitis CBS 6054 predicted protein XP_001384222.2 1382031 D 322104 CDS PICST_89339 126135398 4838857 1384486..1385337 1 NC_009044.1 predicted protein 1385337 4838857 PICST_89339 Pichia stipitis CBS 6054 predicted protein XP_001384223.1 1384486 D 322104 CDS PICST_58279 150865376 4838858 complement(1385552..1386808) 1 NC_009044.1 predicted protein 1386808 4838858 PICST_58279 Pichia stipitis CBS 6054 predicted protein XP_001384564.2 1385552 R 322104 CDS PICST_45532 150865377 4838481 complement(1387463..1388980) 1 NC_009044.1 predicted protein 1388980 4838481 PICST_45532 Pichia stipitis CBS 6054 predicted protein XP_001384565.2 1387463 R 322104 CDS PICST_31669 150865132 4838482 join(1389674..1389684,1389737..1390280) 1 NC_009044.1 predicted protein 1390280 4838482 PICST_31669 Pichia stipitis CBS 6054 predicted protein XP_001384224.2 1389674 D 322104 CDS PICST_77740 150865133 4838859 join(1391645..1393262,1393326..1395979) 1 NC_009044.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 1395979 4838859 PICST_77740 Pichia stipitis CBS 6054 predicted protein XP_001384225.2 1391645 D 322104 CDS PICST_59677 126135404 4838860 join(1397140..1398335,1398363..>1398486) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1398335 4838860 PICST_59677 Pichia stipitis CBS 6054 predicted protein XP_001384226.1 1397140 D 322104 CDS PICST_31672 150865134 4838861 1399208..1401406 1 NC_009044.1 predicted protein 1401406 4838861 PICST_31672 Pichia stipitis CBS 6054 predicted protein XP_001384227.2 1399208 D 322104 CDS PICST_83071 150865378 4838862 complement(1401727..1402902) 1 NC_009044.1 go_function: oxidoreductase activity, acting on CH-OH group of donors; go_process: carbohydrate metabolism; glycerol-3-phosphate dehydrogenase 1402902 GPD2 4838862 GPD2 Pichia stipitis CBS 6054 glycerol-3-phosphate dehydrogenase XP_001384566.2 1401727 R 322104 CDS PICST_67657 150865379 4838736 complement(1404618..1406159) 1 NC_009044.1 transcriptional regulator containing a C2H2 zinc finger; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; protein involved in methionine metabolism 1406159 MET32 4838736 MET32 Pichia stipitis CBS 6054 protein involved in methionine metabolism XP_001384567.2 1404618 R 322104 CDS PICST_36036 126135408 4838737 join(1408821..1409043,1409212..1409642,1409709..1410026) 1 NC_009044.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1410026 4838737 PICST_36036 Pichia stipitis CBS 6054 predicted protein XP_001384228.1 1408821 D 322104 CDS PICST_31676 126136088 4838863 complement(join(1410166..1411438,1412594..1412609,1413143..1413203)) 1 NC_009044.1 go_function: serine carboxypeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1413203 4838863 PICST_31676 Pichia stipitis CBS 6054 predicted protein XP_001384568.1 1410166 R 322104 CDS PICST_44586 126135410 4838738 1414382..>1414915 1 NC_009044.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein >1414915 4838738 PICST_44586 Pichia stipitis CBS 6054 predicted protein XP_001384229.1 1414382 D 322104 CDS PICST_58859 126136090 4838864 complement(join(1415930..1416005,1416129..>1416364)) 1 NC_009044.1 oligosaccharyltransferase epsilon subunit 1416005 OST2 4838864 OST2 Pichia stipitis CBS 6054 oligosaccharyltransferase epsilon subunit XP_001384569.1 1415930 R 322104 CDS PICST_58607 150865135 4838739 1417284..1417856 1 NC_009044.1 go_function: DNA-directed RNA polymerase activity; go_process: transcription; RNA polymerase II fourth largest subunit 1417856 RPB4 4838739 RPB4 Pichia stipitis CBS 6054 RNA polymerase II fourth largest subunit XP_001384230.2 1417284 D 322104 CDS PICST_36041 150865136 4838865 join(1418084..1418269,1418324..1421074) 1 NC_009044.1 go_function: GTP binding; translation elongation factor activity; go_process: protein biosynthesis; translational elongation; ATP dependent RNA helicase and U5 mRNA splicing factor 1421074 SNU114 4838865 SNU114 Pichia stipitis CBS 6054 ATP dependent RNA helicase and U5 mRNA splicing factor XP_001384231.2 1418084 D 322104 CDS PICST_83348 150865380 4838866 complement(join(1422807..1424564,1424667..1424828,1425309..1425377,1425660..1426004)) 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; general RNA polymerase II transcription factor 1426004 SWI3 4838866 SWI3 Pichia stipitis CBS 6054 general RNA polymerase II transcription factor XP_001384570.2 1422807 R 322104 CDS PICST_89240 126135416 4838740 join(1430966..1431274,1431633..1431884) 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein L17B 1431884 RPL17B 4838740 RPL17B Pichia stipitis CBS 6054 ribosomal protein L17B XP_001384232.1 1430966 D 322104 CDS PICST_77955 126135418 4838896 1432605..1432889 1 NC_009044.1 go_component: ubiquinol-cytochrome-c reductase complex (sensu Eukaryota); go_function: ubiquinol-cytochrome-c reductase activity; go_process: electron transport; ubiquinol-cytochrome-c reductase chain VIII 1432889 QCR8 4838896 QCR8 Pichia stipitis CBS 6054 ubiquinol-cytochrome-c reductase chain VIII XP_001384233.1 1432605 D 322104 CDS PICST_89338 126136094 4838897 complement(1433352..1434404) 1 NC_009044.1 go_process: isoprenoid biosynthesis; arnesyl diphosphate synthetase (FPP synthetase) 1434404 ERG20 4838897 ERG20 Pichia stipitis CBS 6054 arnesyl diphosphate synthetase (FPP synthetase) XP_001384571.1 1433352 R 322104 CDS PICST_58362 150865381 4838741 complement(join(1434939..1435916,1435944..1436192)) 1 NC_009044.1 go_process: ribosome biogenesis; EBNA1-binding protein homolog 1436192 EBP2 4838741 EBP2 Pichia stipitis CBS 6054 EBNA1-binding protein homolog XP_001384572.2 1434939 R 322104 CDS PICST_45743 150865382 4838516 complement(1436524..1437783) 1 NC_009044.1 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase); May be involved in extracellular matrix assembly involved in N-linked glycosylation of cell wall mannoproteins; go_component: membrane; go_function: glycolipid 2-alpha-mannosyltransferase activity; go_process: protein amino acid glycosylation; mannosyltransferase 1437783 KTR2 4838516 KTR2 Pichia stipitis CBS 6054 mannosyltransferase XP_001384573.2 1436524 R 322104 CDS PICST_31688 126135420 4838517 1438831..1440285 1 NC_009044.1 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) 1440285 NUO51 4838517 NUO51 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor (Complex I-51KD) (CI-51KD) XP_001384234.1 1438831 D 322104 CDS PICST_45794 126135422 4838898 <1441143..1442003 1 NC_009044.1 go_component: membrane; go_function: molecular function unknown; predicted protein 1442003 4838898 PICST_45794 Pichia stipitis CBS 6054 predicted protein XP_001384235.1 <1441143 D 322104 CDS PICST_44472 126136100 4838899 complement(1442248..>1442874) 1 NC_009044.1 predicted protein >1442874 4838899 PICST_44472 Pichia stipitis CBS 6054 predicted protein XP_001384574.1 1442248 R 322104 CDS PICST_13009 150865137 4838518 1443380..>1443934 1 NC_009044.1 predicted protein >1443934 4838518 PICST_13009 Pichia stipitis CBS 6054 predicted protein XP_001384236.2 1443380 D 322104 CDS PICST_83067 126136102 4838900 complement(join(1444327..1445301,1445314..1445430)) 1 NC_009044.1 go_component: membrane; go_function: binding; go_process: transport; predicted protein 1445430 4838900 PICST_83067 Pichia stipitis CBS 6054 predicted protein XP_001384575.1 1444327 R 322104 CDS PICST_88824 150865383 4838519 complement(1445906..1451611) 1 NC_009044.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; transcriptional accessory protein involved in TBP (TATA-binding protein) regulation helicase MOT1 1451611 MOT1 4838519 MOT1 Pichia stipitis CBS 6054 transcriptional accessory protein involved in TBP (TATA-binding protein) regulation helicase MOT1 XP_001384576.2 1445906 R 322104 CDS PICST_36051 150865384 4838520 complement(1452825..1453499) 1 NC_009044.1 predicted protein 1453499 4838520 PICST_36051 Pichia stipitis CBS 6054 predicted protein XP_001384577.2 1452825 R 322104 CDS PICST_31695 150865385 4838556 complement(join(1455674..1455783,1455822..1456996,1457353..1457419,1457457..1457535)) 1 NC_009044.1 rev product adjacent to gag/pol products; Putative RNA polymerase 1457535 POL5.7 4838556 POL5.7 Pichia stipitis CBS 6054 Putative RNA polymerase XP_001384578.2 1455674 R 322104 CDS PICST_31696 150865386 4838557 complement(1458079..1459323) 1 NC_009044.1 hypothetical multicopy protein occurs in multiple copies through genome; hypothetical protein 1459323 HMC3 4838557 HMC3 Pichia stipitis CBS 6054 hypothetical protein XP_001384579.2 1458079 R 322104 CDS PICST_59150 126136112 4838558 complement(1459782..1460843) 1 NC_009044.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; secondary alcohol dehydrogenase (SADH1) 1460843 SAD1 4838558 SAD1 Pichia stipitis CBS 6054 secondary alcohol dehydrogenase (SADH1) XP_001384580.1 1459782 R 322104 CDS PICST_89386 126136114 4838559 complement(1461885..1463144) 1 NC_009044.1 Homocitrate synthase, mitochondrial precursor; go_function: catalytic activity; homocitrate synthase 1463144 LYS22 4838559 LYS22 Pichia stipitis CBS 6054 homocitrate synthase XP_001384581.1 1461885 R 322104 CDS PICST_58858 150865387 4838560 complement(1465712..>1467295) 1 NC_009044.1 predicted protein >1467295 4838560 PICST_58858 Pichia stipitis CBS 6054 predicted protein XP_001384582.2 1465712 R 322104 CDS PICST_89147 126136118 4838561 complement(join(1469796..1469978,1470033..1470484,1470671..1470749)) 1 NC_009044.1 predicted protein 1470749 4838561 PICST_89147 Pichia stipitis CBS 6054 predicted protein XP_001384583.1 1469796 R 322104 CDS PICST_71737 150865138 4838562 1472559..1474172 1 NC_009044.1 predicted protein 1474172 4838562 PICST_71737 Pichia stipitis CBS 6054 predicted protein XP_001384237.2 1472559 D 322104 CDS PICST_77557 126136120 4838901 complement(1474407..1475615) 1 NC_009044.1 predicted protein 1475615 4838901 PICST_77557 Pichia stipitis CBS 6054 predicted protein XP_001384584.1 1474407 R 322104 CDS PICST_67669 150865388 4838563 complement(1476360..1479242) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1479242 4838563 PICST_67669 Pichia stipitis CBS 6054 predicted protein XP_001384585.2 1476360 R 322104 CDS PICST_31704 150865139 4838653 1480684..1482606 1 NC_009044.1 go_function: nucleic acid binding; helicase activity; ATP binding; mitochondrial RNA helicase 1482606 SUV3 4838653 SUV3 Pichia stipitis CBS 6054 mitochondrial RNA helicase XP_001384238.2 1480684 D 322104 CDS PICST_83065 150865140 4838902 1483125..1483694 1 NC_009044.1 Glucokinase 1483694 GLK2 4838902 GLK2 Pichia stipitis CBS 6054 Glucokinase XP_001384239.2 1483125 D 322104 CDS PICST_67671 150865141 4838874 1484990..1486015 1 NC_009044.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 1486015 4838874 PICST_67671 Pichia stipitis CBS 6054 predicted protein XP_001384240.2 1484990 D 322104 CDS PICST_31707 126136124 4838875 complement(1486314..1487528) 1 NC_009044.1 acetyl-CoA acetyltransferase 1487528 ERG10 4838875 ERG10 Pichia stipitis CBS 6054 acetyl-CoA acetyltransferase XP_001384586.1 1486314 R 322104 CDS PICST_7821 126135434 4838654 <1488368..>1488763 1 NC_009044.1 predicted protein >1488763 4838654 PICST_7821 Pichia stipitis CBS 6054 predicted protein XP_001384241.1 <1488368 D 322104 CDS PICST_77550 150865389 4838876 complement(1489222..1490454) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; ser/thr protein kinase 1490454 RIM11 4838876 RIM11 Pichia stipitis CBS 6054 ser/thr protein kinase XP_001384587.2 1489222 R 322104 CDS PICST_31710 150865390 4838655 complement(1492250..1493554) 1 NC_009044.1 Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins 1493554 PEA1 4838655 PEA1 Pichia stipitis CBS 6054 Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins XP_001384588.2 1492250 R 322104 CDS PICST_45639 150865391 4838656 complement(join(1494996..1495298,1495335..1496024)) 1 NC_009044.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1496024 4838656 PICST_45639 Pichia stipitis CBS 6054 predicted protein XP_001384589.2 1494996 R 322104 CDS PICST_89025 150865392 4838657 complement(join(1496329..1497473,1497675..1497825)) 1 NC_009044.1 cyclin-dependent serine/threonin protein kinase Component of RNA polymerase II holoenzyme, involved in RNA pol II carboxy-terminal domain phosphorylation. Activity of the kinase (SSN3)/cyclin (SSN8) pair required, along with SSN6 & TUP1, for transcriptional repression of a-specific genes (CDK8) (UME5) (PRK1); go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; cyclin-dependent serine/threonin protein kinase 1497825 SSN3 4838657 SSN3 Pichia stipitis CBS 6054 cyclin-dependent serine/threonin protein kinase XP_001384590.2 1496329 R 322104 CDS PICST_58550 150865393 4838658 complement(join(<1498793..1499988,1500037..1500547)) 1 NC_009044.1 predicted protein 1500547 4838658 PICST_58550 Pichia stipitis CBS 6054 predicted protein XP_001384591.2 <1498793 R 322104 CDS PICST_6783 126136136 4838686 complement(<1501402..>1502340) 1 NC_009044.1 predicted protein >1502340 4838686 PICST_6783 Pichia stipitis CBS 6054 predicted protein XP_001384592.1 <1501402 R 322104 CDS PICST_67675 150865142 4838687 1503286..1506228 1 NC_009044.1 predicted protein 1506228 4838687 PICST_67675 Pichia stipitis CBS 6054 predicted protein XP_001384242.2 1503286 D 322104 CDS PICST_83666 150865143 4838877 1506583..1507110 1 NC_009044.1 RNase P and RNase MRP subunit involved in RNA processing 1507110 POP5 4838877 POP5 Pichia stipitis CBS 6054 RNase P and RNase MRP subunit involved in RNA processing XP_001384243.2 1506583 D 322104 CDS PICST_77822 150865144 4838878 join(1507591..1508371,1508399..1509219) 1 NC_009044.1 go_function: hydroxyethylthiazole kinase activity; thiamin-phosphate diphosphorylase activity; go_process: thiamin biosynthesis; predicted protein 1509219 4838878 PICST_77822 Pichia stipitis CBS 6054 predicted protein XP_001384244.2 1507591 D 322104 CDS PICST_58832 150865145 4838879 1509615..>1510349 1 NC_009044.1 predicted protein >1510349 4838879 PICST_58832 Pichia stipitis CBS 6054 predicted protein XP_001384245.2 1509615 D 322104 CDS PICST_45091 150865146 4838880 1511442..1516004 1 NC_009044.1 UDPglucose- glycoprotein glucose phosphotransferase 1516004 KRE5 4838880 KRE5 Pichia stipitis CBS 6054 UDPglucose- glycoprotein glucose phosphotransferase XP_001384246.2 1511442 D 322104 CDS PICST_71674 150865147 4838881 1517094..1518935 1 NC_009044.1 go_function: methylenetetrahydrofolate reductase (NADPH) activity; go_process: methionine metabolism; predicted protein 1518935 4838881 PICST_71674 Pichia stipitis CBS 6054 predicted protein XP_001384247.2 1517094 D 322104 CDS PICST_31721 150865394 4838882 complement(1519613..1521982) 1 NC_009044.1 hypothetical protein 1521982 4838882 PICST_31721 Pichia stipitis CBS 6054 hypothetical protein XP_001384593.2 1519613 R 322104 CDS PICST_31722 150865395 4838688 complement(1523498..1524514) 1 NC_009044.1 predicted protein 1524514 4838688 PICST_31722 Pichia stipitis CBS 6054 predicted protein XP_001384594.2 1523498 R 322104 CDS PICST_31723 150865396 4838689 complement(1525329..1526021) 1 NC_009044.1 go_function: racemase and epimerase activity, acting on amino acids and derivatives; go_process: metabolism; predicted protein 1526021 4838689 PICST_31723 Pichia stipitis CBS 6054 predicted protein XP_001384595.2 1525329 R 322104 CDS PICST_59119 150865148 4838690 join(1526546..1526796,1526824..1528153) 1 NC_009044.1 predicted protein 1528153 4838690 PICST_59119 Pichia stipitis CBS 6054 predicted protein XP_001384248.2 1526546 D 322104 CDS PICST_67678 150865397 4838883 complement(1528220..1529881) 1 NC_009044.1 predicted protein 1529881 4838883 PICST_67678 Pichia stipitis CBS 6054 predicted protein XP_001384596.2 1528220 R 322104 CDS PICST_89184 150865149 4838691 1531032..1533221 1 NC_009044.1 predicted protein 1533221 4838691 PICST_89184 Pichia stipitis CBS 6054 predicted protein XP_001384249.2 1531032 D 322104 CDS PICST_31727 150865398 4838884 complement(1533379..1534170) 1 NC_009044.1 predicted protein 1534170 4838884 PICST_31727 Pichia stipitis CBS 6054 predicted protein XP_001384597.2 1533379 R 322104 CDS PICST_44719 150865150 4838692 join(1534621..1536217,1536398..1536666,1536988..>1537806) 1 NC_009044.1 predicted protein 1536666 4838692 PICST_44719 Pichia stipitis CBS 6054 predicted protein XP_001384250.2 1534621 D 322104 CDS PICST_77657 150865399 4838885 complement(1538040..1538936) 1 NC_009044.1 go_function: acyltransferase activity; go_process: metabolism; predicted protein 1538936 4838885 PICST_77657 Pichia stipitis CBS 6054 predicted protein XP_001384598.2 1538040 R 322104 CDS PICST_59509 126136150 4838693 complement(1539663..1540373) 1 NC_009044.1 predicted protein 1540373 4838693 PICST_59509 Pichia stipitis CBS 6054 predicted protein XP_001384599.1 1539663 R 322104 CDS PICST_44835 126136152 4838826 complement(1541789..1542157) 1 NC_009044.1 go_function: molecular function unknown; predicted protein 1542157 4838826 PICST_44835 Pichia stipitis CBS 6054 predicted protein XP_001384600.1 1541789 R 322104 CDS PICST_31732 150865400 4838827 complement(1542725..1545934) 1 NC_009044.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1545934 4838827 PICST_31732 Pichia stipitis CBS 6054 predicted protein XP_001384601.2 1542725 R 322104 CDS PICST_31733 150865151 4838828 1549137..1549895 1 NC_009044.1 predicted protein 1549895 4838828 PICST_31733 Pichia stipitis CBS 6054 predicted protein XP_001384251.2 1549137 D 322104 CDS PICST_58897 126135456 4838886 join(1550469..1550706,1550737..1551112,1551137..1551353) 1 NC_009044.1 go_function: nucleic acid binding; predicted protein 1551353 4838886 PICST_58897 Pichia stipitis CBS 6054 predicted protein XP_001384252.1 1550469 D 322104 CDS PICST_83317 150865401 4838887 complement(1551453..1553174) 1 NC_009044.1 go_function: oxidoreductase activity; predicted protein 1553174 4838887 PICST_83317 Pichia stipitis CBS 6054 predicted protein XP_001384602.2 1551453 R 322104 CDS PICST_58284 150865402 4838829 complement(join(1553718..1554751,1554782..>1555436)) 1 NC_009044.1 dolichol kinase required for core glycosylation catalyzes the CTP-mediated phosphorylation of dolichol, the terminal step in dolichyl monophosphate (Dol-P) biosynthesis. required for viability, normal rates of lipid intermediate synthesis, protein N-glycosylation; dolichol kinase 1554751 SEC59 4838829 SEC59 Pichia stipitis CBS 6054 dolichol kinase XP_001384603.2 1553718 R 322104 CDS PICST_641 150865152 4838830 1555970..>1559002 1 NC_009044.1 go_component: nucleus; go_function: ATP binding; go_process: chromosome segregation; chromosome condensation and segregation protein >1559002 SMC3 4838830 SMC3 Pichia stipitis CBS 6054 chromosome condensation and segregation protein XP_001384253.2 1555970 D 322104 CDS PICST_44736 126135460 4838888 1559129..1559590 1 NC_009044.1 go_function: ATP binding; go_process: chromosome segregation; predicted protein 1559590 4838888 PICST_44736 Pichia stipitis CBS 6054 predicted protein XP_001384254.1 1559129 D 322104 CDS PICST_58869 126136160 4838384 complement(1561358..1562128) 1 NC_009044.1 go_function: oxidoreductase activity; go_process: metabolism; short-chain dehydrogenase, 2,4- dienoyl-CoA reductase 1562128 SPS21 4838384 SPS21 Pichia stipitis CBS 6054 short-chain dehydrogenase, 2,4- dienoyl-CoA reductase XP_001384604.1 1561358 R 322104 CDS PICST_77516 126136162 4838831 complement(1564377..1565759) 1 NC_009044.1 go_function: tRNA ligase activity; ATP binding; serine-tRNA ligase activity; go_process: tRNA aminoacylation for protein translation; seryl-tRNA aminoacylation; Seryl-tRNA synthetase, cytoplasmic (Serine--tRNA ligase) (SerRS) 1565759 SES1 4838831 SES1 Pichia stipitis CBS 6054 Seryl-tRNA synthetase, cytoplasmic (Serine--tRNA ligase) (SerRS) XP_001384605.1 1564377 R 322104 CDS PICST_31740 150865153 4838701 1566321..1567697 1 NC_009044.1 predicted protein 1567697 4838701 PICST_31740 Pichia stipitis CBS 6054 predicted protein XP_001384255.2 1566321 D 322104 CDS PICST_67685 150865154 4838385 1569097..1572468 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1572468 4838385 PICST_67685 Pichia stipitis CBS 6054 predicted protein XP_001384256.2 1569097 D 322104 CDS PICST_59064 150865403 4838386 complement(join(1572622..1573290,1573314..1573330,1573428..>1573971)) 1 NC_009044.1 predicted protein 1573330 4838386 PICST_59064 Pichia stipitis CBS 6054 predicted protein XP_001384606.2 1572622 R 322104 CDS PICST_36080 150865404 4838702 complement(join(1575908..1576479,1576555..1576730,1576803..1577053)) 1 NC_009044.1 predicted protein 1577053 4838702 PICST_36080 Pichia stipitis CBS 6054 predicted protein XP_001384607.2 1575908 R 322104 CDS PICST_31744 150865155 4838703 1578458..1580476 1 NC_009044.1 predicted protein 1580476 4838703 PICST_31744 Pichia stipitis CBS 6054 predicted protein XP_001384257.2 1578458 D 322104 CDS PICST_31745 150865156 4838387 1580658..1582640 1 NC_009044.1 predicted protein 1582640 4838387 PICST_31745 Pichia stipitis CBS 6054 predicted protein XP_001384258.2 1580658 D 322104 CDS PICST_59493 150865157 4838388 <1584268..>1586220 1 NC_009044.1 predicted protein >1586220 4838388 PICST_59493 Pichia stipitis CBS 6054 predicted protein XP_001384259.2 <1584268 D 322104 CDS PICST_19003 150865405 4838389 complement(<1586818..>1588053) 1 NC_009044.1 predicted protein >1588053 4838389 PICST_19003 Pichia stipitis CBS 6054 predicted protein XP_001384608.2 <1586818 R 322104 CDS PICST_83586 150865158 4838704 1588628..1592215 1 NC_009044.1 predicted protein 1592215 4838704 PICST_83586 Pichia stipitis CBS 6054 predicted protein XP_001384260.2 1588628 D 322104 CDS PICST_45980 150865406 4838390 complement(1592320..1595862) 1 NC_009044.1 go_function: ATP binding; ATP-dependent peptidase activity; serine-type endopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1595862 4838390 PICST_45980 Pichia stipitis CBS 6054 predicted protein XP_001384609.2 1592320 R 322104 CDS PICST_58842 150865407 4838705 complement(1596969..1598033) 1 NC_009044.1 predicted protein 1598033 4838705 PICST_58842 Pichia stipitis CBS 6054 predicted protein XP_001384610.2 1596969 R 322104 CDS PICST_58916 150865159 4838706 <1598880..1600856 1 NC_009044.1 predicted protein 1600856 4838706 PICST_58916 Pichia stipitis CBS 6054 predicted protein XP_001384261.2 <1598880 D 322104 CDS PICST_31752 150865408 4838483 complement(1600924..1601859) 1 NC_009044.1 predicted protein 1601859 4838483 PICST_31752 Pichia stipitis CBS 6054 predicted protein XP_001384611.2 1600924 R 322104 CDS PICST_45936 126136176 4838707 complement(1602689..1602889) 1 NC_009044.1 predicted protein 1602889 4838707 PICST_45936 Pichia stipitis CBS 6054 predicted protein XP_001384612.1 1602689 R 322104 CDS PICST_89296 150865409 4838708 complement(1603853..1604143) 1 NC_009044.1 predicted protein 1604143 4838708 PICST_89296 Pichia stipitis CBS 6054 predicted protein XP_001384613.2 1603853 R 322104 CDS PICST_44822 150865160 4838782 1604386..1607592 1 NC_009044.1 predicted protein 1607592 4838782 PICST_44822 Pichia stipitis CBS 6054 predicted protein XP_001384262.2 1604386 D 322104 CDS PICST_31755 150865161 4838484 1610273..1613533 1 NC_009044.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 1613533 4838484 PICST_31755 Pichia stipitis CBS 6054 predicted protein XP_001384263.2 1610273 D 322104 CDS PICST_45104 126135480 4838485 1614008..1614904 1 NC_009044.1 similar to AAC1 and AAC3; go_component: membrane; go_function: binding; go_process: transport; major mitochondrial ADP/ATP translocator 1614904 PET9 4838485 PET9 Pichia stipitis CBS 6054 major mitochondrial ADP/ATP translocator XP_001384264.1 1614008 D 322104 CDS PICST_44973 150865410 4838486 complement(1616109..1618106) 1 NC_009044.1 Acetolactate synthase, mitochondrial precursor (Acetohydroxy-acid synthase) (ALS) (AHAS); acetolactate synthase 1618106 ILV2 4838486 ILV2 Pichia stipitis CBS 6054 acetolactate synthase XP_001384614.2 1616109 R 322104 CDS PICST_83334 150865411 4838783 complement(1619216..1620766) 1 NC_009044.1 low affinity high capacity ammonium permease 1620766 MEP1 4838783 MEP1 Pichia stipitis CBS 6054 low affinity high capacity ammonium permease XP_001384615.2 1619216 R 322104 CDS PICST_31759 150865412 4838784 complement(1623864..1627022) 1 NC_009044.1 agglutinin-like protein 6 serine rich 1627022 ALS6 4838784 ALS6 Pichia stipitis CBS 6054 agglutinin-like protein 6 serine rich XP_001384616.2 1623864 R 322104 CDS PICST_58312 126136186 4838785 complement(1627443..>1628207) 1 NC_009044.1 predicted protein >1628207 4838785 PICST_58312 Pichia stipitis CBS 6054 predicted protein XP_001384617.1 1627443 R 322104 CDS PICST_67692 126135482 4838786 join(1630994..1630998,1631509..1633594) 1 NC_009044.1 glucoseamine-6- phosphate synthase [EC:2.6.1.16] [KO:K00820]; go_function: sugar binding; go_process: metabolism; carbohydrate metabolism; glucoseamine-6- phosphate synthase 1633594 GFA1 4838786 GFA1 Pichia stipitis CBS 6054 glucoseamine-6- phosphate synthase XP_001384265.1 1630994 D 322104 CDS PICST_44570 126136188 4838487 complement(1634046..>1634258) 1 NC_009044.1 predicted protein >1634258 4838487 PICST_44570 Pichia stipitis CBS 6054 predicted protein XP_001384618.1 1634046 R 322104 CDS PICST_77457 150865162 4838787 join(1636095..1636251,1636396..1636461,1636690..1636857,1636903..1638284) 1 NC_009044.1 kinase of RNA polymerase II carboxy-terminal domain (CTD), alpha subunit phosphorylates the RPO21 CTD (carboxy-terminal domain) also called CTDK-I alpha subunit; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; kinase of RNA polymerase II carboxy-terminal domain (CTD), alpha subunit 1638284 CTK1 4838787 CTK1 Pichia stipitis CBS 6054 kinase of RNA polymerase II carboxy-terminal domain (CTD), alpha subunit XP_001384266.2 1636095 D 322104 CDS PICST_31763 150865163 4838502 1638631..1639161 1 NC_009044.1 predicted protein 1639161 4838502 PICST_31763 Pichia stipitis CBS 6054 predicted protein XP_001384267.2 1638631 D 322104 CDS PICST_89074 150865164 4838503 1641101..1642438 1 NC_009044.1 go_function: signal transducer activity; go_process: G-protein coupled receptor protein signaling pathway; predicted protein 1642438 4838503 PICST_89074 Pichia stipitis CBS 6054 predicted protein XP_001384268.2 1641101 D 322104 CDS PICST_67695 150865413 4838504 complement(join(1642794..1645201,1645729..1645773,1645894..1645897)) 1 NC_009044.1 suppressor of DNA polymerase and splicing mutations 1645897 PSP2 4838504 PSP2 Pichia stipitis CBS 6054 suppressor of DNA polymerase and splicing mutations XP_001384619.2 1642794 R 322104 CDS PICST_36090 150865414 4838788 complement(1646366..1647892) 1 NC_009044.1 go_component: vacuole; go_function: aminopeptidase I activity; go_process: proteolysis and peptidolysis; predicted protein 1647892 4838788 PICST_36090 Pichia stipitis CBS 6054 predicted protein XP_001384620.2 1646366 R 322104 CDS PICST_88952 126136194 4838789 complement(1648675..1649814) 1 NC_009044.1 go_process: hypusine biosynthesis from peptidyl-lysine; predicted protein 1649814 4838789 PICST_88952 Pichia stipitis CBS 6054 predicted protein XP_001384621.1 1648675 R 322104 CDS PICST_44890 126136196 4838903 complement(1650524..1650952) 1 NC_009044.1 NADH:ubiquinone oxidoreductase, B17.2 subunit (N7BM); go_component: mitochondrial inner membrane; go_function: electron transporter activity; NADH dehydrogenase (ubiquinone) activity; go_process: electron transport; NADH:ubiquinone oxidoreductase, B17.2 subunit 1650952 NUO17 4838903 NUO17 Pichia stipitis CBS 6054 NADH:ubiquinone oxidoreductase, B17.2 subunit XP_001384622.1 1650524 R 322104 CDS PICST_45009 150865415 4838904 complement(1651734..1652714) 1 NC_009044.1 go_component: membrane; go_function: ion channel activity; go_process: ion transport; plasma membrane heat shock protein 1652714 HSP31 4838904 HSP31 Pichia stipitis CBS 6054 plasma membrane heat shock protein XP_001384623.2 1651734 R 322104 CDS PICST_36094 126136200 4838905 complement(join(1653801..1654039,1654116..1654143)) 1 NC_009044.1 predicted protein 1654143 4838905 PICST_36094 Pichia stipitis CBS 6054 predicted protein XP_001384624.1 1653801 R 322104 CDS PICST_83361 150865165 4838906 join(1656286..1656819,1656907..1658886) 1 NC_009044.1 go_component: membrane; go_function: transporter activity; go_process: sodium ion transport; low-affinity phosphate transporter 1658886 PHO91 4838906 PHO91 Pichia stipitis CBS 6054 low-affinity phosphate transporter XP_001384269.2 1656286 D 322104 CDS PICST_59020 150865166 4838505 <1659973..1662351 1 NC_009044.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1662351 4838505 PICST_59020 Pichia stipitis CBS 6054 predicted protein XP_001384270.2 <1659973 D 322104 CDS PICST_44466 126135494 4838506 <1662937..1663356 1 NC_009044.1 NADPH cytochrome B5 oxidoreductase-like protein 1663356 CYB5.1 4838506 CYB5.1 Pichia stipitis CBS 6054 NADPH cytochrome B5 oxidoreductase-like protein XP_001384271.1 <1662937 D 322104 CDS PICST_36098 150865416 4838507 complement(1663446..1664069) 1 NC_009044.1 5-formyltetrahydrofolate cyclo-ligase (5,10-methenyl-tetrahydrofolate synthetase) (Methenyl-THF synthetase) (MTHFS); go_function: catalytic activity; go_process: metabolism; 5,10-methenyltetrahydrofolate synthetase 1664069 FAU1 4838507 FAU1 Pichia stipitis CBS 6054 5,10-methenyltetrahydrofolate synthetase XP_001384625.2 1663446 R 322104 CDS PICST_58499 150865167 4838907 <1667204..1668955 1 NC_009044.1 Ssy1p controls expression of several transporter genes, including BAP2, TAT1, PTR2 and YDR046c [Saccharomyces cerevisiae]; go_component: membrane; go_process: transport; transcriptional regulator of multiple amino acid permeases 1668955 SSY1.5 4838907 SSY1.5 Pichia stipitis CBS 6054 transcriptional regulator of multiple amino acid permeases XP_001384272.2 <1667204 D 322104 CDS PICST_67702 150865168 4838541 join(1669767..1670097,1670137..1675395,1675460..1675494) 1 NC_009044.1 Dedicator of cytokinesis protein 4 CRK binding protein 1675494 DOC180 4838541 DOC180 Pichia stipitis CBS 6054 Dedicator of cytokinesis protein 4 CRK binding protein XP_001384273.2 1669767 D 322104 CDS PICST_71972 126135500 4838542 1675769..1676119 1 NC_009044.1 go_function: cofactor binding; mitochondrial acyl carrier protein 1676119 ACP1 4838542 ACP1 Pichia stipitis CBS 6054 mitochondrial acyl carrier protein XP_001384274.1 1675769 D 322104 CDS PICST_67704 150865169 4838543 1676815..1677969 1 NC_009044.1 regulatory subunit for the mitotic function of type I protein phosphatase Interacts with and may be a positive regulator of GLC7 which encodes type1 protein phosphatase; regulatory subunit for the mitotic function of type I protein phosphatase 1677969 SDS2 4838543 SDS2 Pichia stipitis CBS 6054 regulatory subunit for the mitotic function of type I protein phosphatase XP_001384275.2 1676815 D 322104 CDS PICST_31780 150865170 4838544 1678255..1678881 1 NC_009044.1 18 kDa heat shock protein (HSP 18) 1678881 HSP18 4838544 HSP18 Pichia stipitis CBS 6054 18 kDa heat shock protein (HSP 18) XP_001384276.2 1678255 D 322104 CDS PICST_59263 150865417 4838545 complement(1679662..1680741) 1 NC_009044.1 go_component: eukaryotic translation initiation factor 2B complex; go_function: translation initiation factor activity; GTP binding; go_process: translational initiation; translation initiation factor eIF2b 1680741 GCD7 4838545 GCD7 Pichia stipitis CBS 6054 translation initiation factor eIF2b XP_001384626.2 1679662 R 322104 CDS PICST_83654 150865171 4838805 join(1681307..1682618,1682646..1683136) 1 NC_009044.1 hypothetical protein 1683136 4838805 PICST_83654 Pichia stipitis CBS 6054 hypothetical protein XP_001384277.2 1681307 D 322104 CDS PICST_71892 150865418 4838546 complement(1683307..1684203) 1 NC_009044.1 ubiquinone/menaquinone biosynthesis methyltransferase; go_function: methyltransferase activity; mitochondrial C- methyltransferase 1684203 COQ5 4838546 COQ5 Pichia stipitis CBS 6054 mitochondrial C- methyltransferase XP_001384627.2 1683307 R 322104 CDS PICST_83166 126136208 4838806 complement(1684581..1686095) 1 NC_009044.1 Pyruvate kinase (PK); go_function: pyruvate kinase activity; go_process: glycolysis; pyruvate kinase 1686095 PYK1 4838806 PYK1 Pichia stipitis CBS 6054 pyruvate kinase XP_001384628.1 1684581 R 322104 CDS PICST_58189 150865172 4838807 1687414..1687851 1 NC_009044.1 mitochondrial chaperonin of the DnaJ family 1687851 MDJ2 4838807 MDJ2 Pichia stipitis CBS 6054 mitochondrial chaperonin of the DnaJ family XP_001384278.2 1687414 D 322104 CDS PICST_31786 150865419 4838547 complement(1688134..1691670) 1 NC_009044.1 go_function: ATP binding; peroxisomal assembly protein 1691670 PEX6 4838547 PEX6 Pichia stipitis CBS 6054 peroxisomal assembly protein XP_001384629.2 1688134 R 322104 CDS PICST_31787 150865173 4838808 1692628..1695240 1 NC_009044.1 go_function: membrane alanyl aminopeptidase activity; go_process: proteolysis and peptidolysis; alanine/arginine aminopeptidase 1695240 APE2.1 4838808 APE2.1 Pichia stipitis CBS 6054 alanine/arginine aminopeptidase XP_001384279.2 1692628 D 322104 CDS PICST_83357 126136212 4838790 complement(join(1696210..1696497,1696981..1697034)) 1 NC_009044.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S large subunit ribosomal protein 1697034 RPL31B 4838790 RPL31B Pichia stipitis CBS 6054 60S large subunit ribosomal protein XP_001384630.1 1696210 R 322104 CDS PICST_59570 150865420 4838809 complement(join(1697564..1698413,1698435..1698817)) 1 NC_009044.1 hypothetical protein 1698817 4838809 PICST_59570 Pichia stipitis CBS 6054 hypothetical protein XP_001384631.2 1697564 R 322104 CDS PICST_31790 150865174 4838810 join(1699144..1699426,1699511..1699599) 1 NC_009044.1 hypothetical protein 1699599 4838810 PICST_31790 Pichia stipitis CBS 6054 hypothetical protein XP_001384280.2 1699144 D 322104 CDS PICST_31791 150865421 4838791 complement(1699856..1700896) 1 NC_009044.1 hypothetical protein 1700896 4838791 PICST_31791 Pichia stipitis CBS 6054 hypothetical protein XP_001384632.2 1699856 R 322104 CDS PICST_58479 126136218 4838811 complement(<1702682..1703797) 1 NC_009044.1 L-fucose permease Glucose/galactose transporter (bacterial); L-fucose permease Glucose/galactose transporter 1703797 FUC1 4838811 FUC1 Pichia stipitis CBS 6054 L-fucose permease Glucose/galactose transporter XP_001384633.1 <1702682 R 322104 CDS PICST_67709 150865422 4838832 complement(1705706..1707583) 1 NC_009044.1 hypothetical protein 1707583 4838832 PICST_67709 Pichia stipitis CBS 6054 hypothetical protein XP_001384634.2 1705706 R 322104 CDS PICST_58712 150865423 4838833 complement(1708086..1711277) 1 NC_009044.1 vacuolar carboxypeptidase Y 1711277 VAM6 4838833 VAM6 Pichia stipitis CBS 6054 vacuolar carboxypeptidase Y XP_001384635.2 1708086 R 322104 CDS PICST_65683 126136224 4838834 complement(1712353..1715208) 1 NC_009044.1 U3 snoRNP protein 1715208 UTP21 4838834 UTP21 Pichia stipitis CBS 6054 U3 snoRNP protein XP_001384636.1 1712353 R 322104 CDS PICST_83606 126135514 4838835 1715850..1717691 1 NC_009044.1 go_function: oxidoreductase activity; FAD binding; go_process: tRNA processing; dihydrouridine synthase of tRNA 1717691 DUS3 4838835 DUS3 Pichia stipitis CBS 6054 dihydrouridine synthase of tRNA XP_001384281.1 1715850 D 322104 CDS PICST_45587 150865424 4838792 complement(1717895..1718482) 1 NC_009044.1 receptor-associated protein Yeast homolog of human BAP31 protein; go_component: endoplasmic reticulum; integral to membrane; go_process: intracellular protein transport; apoptosis; receptor-associated protein 1718482 BAP31 4838792 BAP31 Pichia stipitis CBS 6054 receptor-associated protein XP_001384637.2 1717895 R 322104 CDS PICST_67712 150865425 4838836 complement(join(1720665..1720688,1720708..1721808,1722670..1723064,1723086..1723205,1723320..1724496)) 1 NC_009044.1 occurs in multiple copies; Hypothetical protein 1724496 4838836 PICST_67712 Pichia stipitis CBS 6054 Hypothetical protein XP_001384638.2 1720665 R 322104 CDS PICST_83377 150865426 4838837 complement(join(1725106..1726085,1726104..1726235,1726293..1726854)) 1 NC_009044.1 involved in cell wall biogenesis and architecture; go_component: integral to membrane; go_function: molecular function unknown; membrane protein 1726854 ECM3 4838837 ECM3 Pichia stipitis CBS 6054 membrane protein XP_001384639.2 1725106 R 322104 CDS PICST_31800 150865427 4838838 complement(1728266..1728829) 1 NC_009044.1 hypothetical protein 1728829 4838838 PICST_31800 Pichia stipitis CBS 6054 hypothetical protein XP_001384640.2 1728266 R 322104 CDS PICST_65686 150865428 4838938 complement(join(1730103..1731187,1731251..1731806)) 1 NC_009044.1 DNA polymerase delta binding protein binds to catalytic subunit of DNA polymerase alpha (Pol1p); go_component: nucleus; go_function: DNA binding; DNA polymerase delta binding protein 1731806 POB3 4838938 POB3 Pichia stipitis CBS 6054 DNA polymerase delta binding protein XP_001384641.2 1730103 R 322104 CDS PICST_89195 126135516 4838939 1732617..1733708 1 NC_009044.1 Aspartate-semialdehyde dehydrogenase; go_process: amino acid metabolism; threonine and methionine pathway 1733708 HOM2 4838939 HOM2 Pichia stipitis CBS 6054 threonine and methionine pathway XP_001384282.1 1732617 D 322104 CDS PICST_77724 150865175 4838793 1733917..1734837 1 NC_009044.1 putative Cytosine deaminase FCY1 1734837 FCY2 4838793 FCY2 Pichia stipitis CBS 6054 putative Cytosine deaminase FCY1 XP_001384283.2 1733917 D 322104 CDS PICST_59295 150865176 4838794 join(1735447..1735662,1735732..1738839,1739092..1739346) 1 NC_009044.1 A component of the nuclear pore that is involved in the nuclear export of both mRNA and protein; protein involved in processes affecting the actin cytoskeleton and mitosis 1739346 SAC3 4838794 SAC3 Pichia stipitis CBS 6054 protein involved in processes affecting the actin cytoskeleton and mitosis XP_001384284.2 1735447 D 322104 CDS PICST_31806 150865177 4838795 join(1739701..1739776,1740067..1740925,1740948..1741013,1741043..1741340) 1 NC_009044.1 epsin N-terminal homology-containing protein 1741340 ENT3 4838795 ENT3 Pichia stipitis CBS 6054 epsin N-terminal homology-containing protein XP_001384285.2 1739701 D 322104 CDS PICST_67718 126136236 4838796 complement(1742373..1743125) 1 NC_009044.1 hypothetical protein 1743125 4838796 PICST_67718 Pichia stipitis CBS 6054 hypothetical protein XP_001384642.1 1742373 R 322104 CDS PICST_31809 150865178 4838940 1744346..1745341 1 NC_009044.1 hypothetical protein 1745341 4838940 PICST_31809 Pichia stipitis CBS 6054 hypothetical protein XP_001384286.2 1744346 D 322104 CDS PICST_58163 150865429 4838797 complement(1745618..1746316) 1 NC_009044.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; U4/U6.U5 snRNP associated protein 1746316 SNU23 4838797 SNU23 Pichia stipitis CBS 6054 U4/U6.U5 snRNP associated protein XP_001384643.2 1745618 R 322104 CDS PICST_44837 150865179 4838941 <1746705..1747376 1 NC_009044.1 Three Prime Phosphatase 1 Polynucleotide kinase 3' phosphatase 1747376 TPP1 4838941 TPP1 Pichia stipitis CBS 6054 Three Prime Phosphatase 1 Polynucleotide kinase 3' phosphatase XP_001384287.2 <1746705 D 322104 CDS PICST_45102 150865430 4838748 complement(1747476..>1748243) 1 NC_009044.1 conserved hypothetical protein >1748243 4838748 PICST_45102 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384644.2 1747476 R 322104 CDS PICST_67720 126135528 4838942 1748628..1749095 1 NC_009044.1 predicted protein 1749095 4838942 PICST_67720 Pichia stipitis CBS 6054 predicted protein XP_001384288.1 1748628 D 322104 CDS PICST_67721 126136242 4838749 complement(1749414..1750175) 1 NC_009044.1 predicted protein 1750175 4838749 PICST_67721 Pichia stipitis CBS 6054 predicted protein XP_001384645.1 1749414 R 322104 CDS PICST_36120 150865180 4838943 1751224..1752543 1 NC_009044.1 monocarboxylate permease homologue 1752543 MCH4.4 4838943 MCH4.4 Pichia stipitis CBS 6054 monocarboxylate permease homologue XP_001384289.2 1751224 D 322104 CDS PICST_71850 126135532 4838750 1753826..1754947 1 NC_009044.1 go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; low affinity zinc transporter 1754947 ZRT2.1 4838750 ZRT2.1 Pichia stipitis CBS 6054 low affinity zinc transporter XP_001384290.1 1753826 D 322104 CDS PICST_31817 126135534 4838751 1755426..1755830 1 NC_009044.1 predicted protein 1755830 4838751 PICST_31817 Pichia stipitis CBS 6054 predicted protein XP_001384291.1 1755426 D 322104 CDS PICST_45902 150865181 4838752 1756195..1757427 1 NC_009044.1 predicted protein 1757427 4838752 PICST_45902 Pichia stipitis CBS 6054 predicted protein XP_001384292.2 1756195 D 322104 CDS PICST_45065 150865431 4838753 complement(1757520..1758824) 1 NC_009044.1 go_function: transaminase activity; go_process: biosynthesis; predicted protein 1758824 4838753 PICST_45065 Pichia stipitis CBS 6054 predicted protein XP_001384646.2 1757520 R 322104 CDS PICST_31820 126136246 4838944 complement(1759339..1761063) 1 NC_009044.1 Uroporphyrin-III C-methyltransferase (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM); go_function: methyltransferase activity; go_process: metabolism; methionine metabolism 1761063 MET1 4838944 MET1 Pichia stipitis CBS 6054 methionine metabolism XP_001384647.1 1759339 R 322104 CDS PICST_58954 126135538 4838409 1761830..1763152 1 NC_009044.1 predicted protein 1763152 4838409 PICST_58954 Pichia stipitis CBS 6054 predicted protein XP_001384293.1 1761830 D 322104 CDS PICST_44575 150865432 4838754 complement(1763478..1763999) 1 NC_009044.1 predicted protein 1763999 4838754 PICST_44575 Pichia stipitis CBS 6054 predicted protein XP_001384648.2 1763478 R 322104 CDS PICST_45343 126136250 4838410 complement(<1766317..1768053) 1 NC_009044.1 go_function: acyltransferase activity; go_process: metabolism; predicted protein 1768053 4838410 PICST_45343 Pichia stipitis CBS 6054 predicted protein XP_001384649.1 <1766317 R 322104 CDS PICST_31824 150865433 4838411 complement(join(1768863..1769384,1769440..1769499)) 1 NC_009044.1 predicted protein 1769499 4838411 PICST_31824 Pichia stipitis CBS 6054 predicted protein XP_001384650.2 1768863 R 322104 CDS PICST_31825 150865182 4838412 join(1770001..1771252,1771551..1771588) 1 NC_009044.1 predicted protein 1771588 4838412 PICST_31825 Pichia stipitis CBS 6054 predicted protein XP_001384294.2 1770001 D 322104 CDS PICST_77904 150865434 4838755 complement(1772196..1773233) 1 NC_009044.1 Possibly hydroxylates ceramide-1 at C-4 to give ceramide-2. Or, hydroxylates DHS at C-4 to give PHS, which is acylated to give ceramide-2. Not yet clear whether DHS or ceramide-1 is the preferred substrate; go_function: catalytic activity; go_process: metabolism; Sphingolipid hydroxylase 1773233 SUR2 4838755 SUR2 Pichia stipitis CBS 6054 Sphingolipid hydroxylase XP_001384651.2 1772196 R 322104 CDS PICST_27983 150865183 4838413 1775878..1777530 1 NC_009044.1 sugar transporter similar to Candida intermedia gxf1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; Sugar UpTake (tentative) 1777530 SUT2 4838413 SUT2 Pichia stipitis CBS 6054 Sugar UpTake (tentative) XP_001384295.2 1775878 D 322104 CDS PICST_1541 150865435 4838763 complement(<1778040..1780253) 1 NC_009044.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; beta-glucosidase 1780253 BGL1 4838763 BGL1 Pichia stipitis CBS 6054 beta-glucosidase XP_001384652.2 <1778040 R 322104 CDS PICST_31830 150865436 4838414 complement(1781319..1782923) 1 NC_009044.1 possible hexose transporter; go_component: integral to membrane; go_function: transporter activity; go_process: transport; hexose transporter 1782923 HXT2.6 4838414 HXT2.6 Pichia stipitis CBS 6054 hexose transporter XP_001384653.2 1781319 R 322104 CDS PICST_31831 150865437 4838429 complement(1784814..1785203) 1 NC_009044.1 go_function: electron transporter activity; go_process: electron transport; Thioredoxin (Trx) 1785203 TRX4 4838429 TRX4 Pichia stipitis CBS 6054 Thioredoxin (Trx) XP_001384654.2 1784814 R 322104 CDS PICST_67724 150865184 4838430 1786216..1787361 1 NC_009044.1 predicted protein 1787361 4838430 PICST_67724 Pichia stipitis CBS 6054 predicted protein XP_001384296.2 1786216 D 322104 CDS PICST_59143 150865438 4838764 complement(1788626..1793056) 1 NC_009044.1 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily; go_component: membrane; go_function: ATP binding; go_process: transport; ABC transporter 1793056 CDR4.2 4838764 CDR4.2 Pichia stipitis CBS 6054 ABC transporter XP_001384655.2 1788626 R 322104 CDS PICST_22344 126135546 4838431 <1795822..>1796343 1 NC_009044.1 go_component: nucleus; go_function: DNA binding; zinc ion binding; go_process: transcription; predicted protein >1796343 4838431 PICST_22344 Pichia stipitis CBS 6054 predicted protein XP_001384297.1 <1795822 D 322104 CDS PICST_31835 126136264 4838765 complement(1797158..1798561) 1 NC_009044.1 predicted protein 1798561 4838765 PICST_31835 Pichia stipitis CBS 6054 predicted protein XP_001384656.1 1797158 R 322104 CDS PICST_36132 150865185 4838432 1798927..1800177 1 NC_009044.1 go_function: molecular function unknown; predicted protein 1800177 4838432 PICST_36132 Pichia stipitis CBS 6054 predicted protein XP_001384298.2 1798927 D 322104 CDS PICST_89671 150865697 4839258 complement(join(1637..3005,3132..3340)) 1 NC_009045.1 zinc finger protein possibly regulating maltose complex or other sugar transporters (MAL33); go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; zinc finger protein possibly regulating maltose complex or other sugar transporters 3340 SUC1.1 4839258 SUC1.1 Pichia stipitis CBS 6054 zinc finger protein possibly regulating maltose complex or other sugar transporters XP_001385022.2 1637 R 322104 CDS PICST_31838 126136999 4839389 complement(4662..6419) 1 NC_009045.1 Maltose permease some smilarity to Candida albicans MAL31; go_component: integral to membrane; go_function: transporter activity; go_process: transport; maltose permease 6419 MAL2 4839389 MAL2 Pichia stipitis CBS 6054 maltose permease XP_001385023.1 4662 R 322104 CDS PICST_60352 150865439 4839390 7554..9272 1 NC_009045.1 alpha-D-glucosidase (maltase) ( alpha-amylase) (MAL2) (MALT); go_function: alpha-amylase activity; go_process: carbohydrate metabolism; alpha-glucosidase maltase 9272 MAL7 4839390 MAL7 Pichia stipitis CBS 6054 alpha-glucosidase maltase XP_001384657.2 7554 D 322104 CDS PICST_78232 150865698 4839155 complement(<14270..15529) 1 NC_009045.1 hyphally regulated cell wall protein similar to Candida albicans HYR1; HYR1-like protein 15529 HYR2.2 4839155 HYR2.2 Pichia stipitis CBS 6054 HYR1-like protein XP_001385024.2 <14270 R 322104 CDS PICST_31841 126137003 4839189 complement(18138..22013) 1 NC_009045.1 Hypothetical threonine-rich protein may be involved in floculation; Floculation protein FLO1 22013 FLO1 4839189 FLO1 Pichia stipitis CBS 6054 Floculation protein FLO1 XP_001385025.1 18138 R 322104 CDS PICST_60847 126136269 4839190 26625..28058 1 NC_009045.1 go_function: oxidoreductase activity; go_process: metabolism; mitochondrial aldehyde dehydrogenase 28058 ALD3 4839190 ALD3 Pichia stipitis CBS 6054 mitochondrial aldehyde dehydrogenase XP_001384658.1 26625 D 322104 CDS PICST_61096 150865699 4839156 complement(28100..29485) 1 NC_009045.1 go_function: acid phosphatase activity; acid phosphatase, secreted 29485 PHO6 4839156 PHO6 Pichia stipitis CBS 6054 acid phosphatase, secreted XP_001385026.2 28100 R 322104 CDS PICST_89701 150865700 4839191 complement(30633..31790) 1 NC_009045.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; polyol dehydrogenase 31790 SOR1 4839191 SOR1 Pichia stipitis CBS 6054 polyol dehydrogenase XP_001385027.2 30633 R 322104 CDS PICST_46731 150865701 4839192 complement(32740..33978) 1 NC_009045.1 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; transcriptional activator, Zn-finger 33978 UGA3.3 4839192 UGA3.3 Pichia stipitis CBS 6054 transcriptional activator, Zn-finger XP_001385028.2 32740 R 322104 CDS PICST_17775 150865440 4839193 join(<35163..35361,35470..35610,35647..>36662) 1 NC_009045.1 Fungal specific transcription factor; go_function: DNA binding; transcription factor activity; Probable sucrose utilization protein (SUC1) or maltose fermentation regulatory protein (MAL13) 35610 SUC1.5 4839193 SUC1.5 Pichia stipitis CBS 6054 Probable sucrose utilization protein (SUC1) or maltose fermentation regulatory protein (MAL13) XP_001384659.2 <35163 D 322104 CDS PICST_46376 150865702 4839157 complement(join(37106..37284,37348..37994,38247..38524)) 1 NC_009045.1 predicted protein 38524 4839157 PICST_46376 Pichia stipitis CBS 6054 predicted protein XP_001385029.2 37106 R 322104 CDS PICST_31848 150865703 4839194 complement(40089..41738) 1 NC_009045.1 predicted protein 41738 4839194 PICST_31848 Pichia stipitis CBS 6054 predicted protein XP_001385030.2 40089 R 322104 CDS PICST_47055 150865441 4839195 join(42076..42753,42820..43092) 1 NC_009045.1 go_process: intracellular signaling cascade; predicted protein 43092 4839195 PICST_47055 Pichia stipitis CBS 6054 predicted protein XP_001384660.2 42076 D 322104 CDS PICST_46976 150865704 4839158 complement(43160..44245) 1 NC_009045.1 diacylglycerol pyrophosphate phosphatase 44245 DPP4 4839158 DPP4 Pichia stipitis CBS 6054 diacylglycerol pyrophosphate phosphatase XP_001385031.2 43160 R 322104 CDS PICST_89470 150865705 4839196 complement(44701..46011) 1 NC_009045.1 Valine--pyruvate aminotransferase 46011 YEY2 4839196 YEY2 Pichia stipitis CBS 6054 Valine--pyruvate aminotransferase XP_001385032.2 44701 R 322104 CDS PICST_36140 126136275 4839197 46686..47024 1 NC_009045.1 predicted protein 47024 4839197 PICST_36140 Pichia stipitis CBS 6054 predicted protein XP_001384661.1 46686 D 322104 CDS PICST_18300 150865706 4839159 complement(join(<47354..47509,47528..>48739)) 1 NC_009045.1 Regulator of Ty1 Transposition 47509 RTT106 4839159 RTT106 Pichia stipitis CBS 6054 Regulator of Ty1 Transposition XP_001385033.2 <47354 R 322104 CDS PICST_31853 150865442 4839198 49135..50205 1 NC_009045.1 predicted protein 50205 4839198 PICST_31853 Pichia stipitis CBS 6054 predicted protein XP_001384662.2 49135 D 322104 CDS PICST_59800 150865443 4839160 join(<52349..52473,52522..53186,53211..53755,53795..53929) 1 NC_009045.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 53929 4839160 PICST_59800 Pichia stipitis CBS 6054 predicted protein XP_001384663.2 <52349 D 322104 CDS PICST_67730 126137021 4839161 complement(55609..55950) 1 NC_009045.1 predicted protein 55950 4839161 PICST_67730 Pichia stipitis CBS 6054 predicted protein XP_001385034.1 55609 R 322104 CDS PICST_65696 126137023 4839199 complement(57813..58649) 1 NC_009045.1 D-arabinitol 2-dehydrogenase [ribulose forming] (ARDH) [EC:1.1.1.184] [KO:K00079]; go_function: D-arabinitol 2-dehydrogenase activity; go_process: metabolism; D-arabinitol 2-dehydrogenase [ribulose forming] (ARDH) 58649 ARD2 4839199 ARD2 Pichia stipitis CBS 6054 D-arabinitol 2-dehydrogenase [ribulose forming] (ARDH) XP_001385035.1 57813 R 322104 CDS PICST_60062 150865707 4839057 complement(59734..>61467) 1 NC_009045.1 spermidine exporter, MDR-type pump (TPO3); go_component: integral to membrane; go_function: transporter activity; go_process: transport; spermidine exporter, MDR-type pump >61467 MDR19 4839057 MDR19 Pichia stipitis CBS 6054 spermidine exporter, MDR-type pump XP_001385036.2 59734 R 322104 CDS PICST_47451 150865708 4839058 complement(62186..>63931) 1 NC_009045.1 Synaptic vesicle transporter SVOP; go_component: integral to membrane; go_function: transporter activity; go_process: transport; multidrug resistance protein 4 >63931 MDR14 4839058 MDR14 Pichia stipitis CBS 6054 multidrug resistance protein 4 XP_001385037.2 62186 R 322104 CDS PICST_78247 150865709 4839059 complement(64626..66062) 1 NC_009045.1 predicted protein 66062 4839059 PICST_78247 Pichia stipitis CBS 6054 predicted protein XP_001385038.2 64626 R 322104 CDS PICST_60277 126136281 4839060 66658..67122 1 NC_009045.1 N-acetyltransferase HPA3 Histone and other Protein Acetyltransferase; go_function: N-acetyltransferase activity; N-acetyltransferase HPA3 67122 HPA3 4839060 HPA3 Pichia stipitis CBS 6054 N-acetyltransferase HPA3 XP_001384664.1 66658 D 322104 CDS PICST_31861 150865444 4839570 67625..68953 1 NC_009045.1 predicted protein 68953 4839570 PICST_31861 Pichia stipitis CBS 6054 predicted protein XP_001384665.2 67625 D 322104 CDS PICST_60004 126137031 4839571 complement(69334..69585) 1 NC_009045.1 predicted protein 69585 4839571 PICST_60004 Pichia stipitis CBS 6054 predicted protein XP_001385039.1 69334 R 322104 CDS PICST_31862 150865445 4839061 70494..71813 1 NC_009045.1 predicted protein 71813 4839061 PICST_31862 Pichia stipitis CBS 6054 predicted protein XP_001384666.2 70494 D 322104 CDS PICST_72694 126136287 4839572 72437..73030 1 NC_009045.1 protein involved in nonallelic heterokaryon incompatibility 73030 HET1 4839572 HET1 Pichia stipitis CBS 6054 protein involved in nonallelic heterokaryon incompatibility XP_001384667.1 72437 D 322104 CDS PICST_59821 126137033 4839573 complement(73297..73677) 1 NC_009045.1 predicted protein 73677 4839573 PICST_59821 Pichia stipitis CBS 6054 predicted protein XP_001385040.1 73297 R 322104 CDS PICST_31865 150865446 4839062 74572..76980 1 NC_009045.1 predicted protein 76980 4839062 PICST_31865 Pichia stipitis CBS 6054 predicted protein XP_001384668.2 74572 D 322104 CDS PICST_67734 150865447 4839574 78187..82104 1 NC_009045.1 mucin-like protein containing chitinase features probably part of mannoprotein cell wall possibly involved in adhesion; extremely serine rich protein - mucin-like protein 82104 MUC1.5 4839574 MUC1.5 Pichia stipitis CBS 6054 extremely serine rich protein - mucin-like protein XP_001384669.2 78187 D 322104 CDS PICST_46942 150865448 4839575 join(82734..84870,84916..85145) 1 NC_009045.1 predicted protein 85145 4839575 PICST_46942 Pichia stipitis CBS 6054 predicted protein XP_001384670.2 82734 D 322104 CDS PICST_72282 150865449 4839576 join(87137..87354,87484..87661,87713..88222,88286..89860) 1 NC_009045.1 bHLH DNA-binding protein that promotes hyphal development 89860 CPH2 4839576 CPH2 Pichia stipitis CBS 6054 bHLH DNA-binding protein that promotes hyphal development XP_001384671.2 87137 D 322104 CDS PICST_31869 150865450 4839577 join(92815..93732,93817..94662) 1 NC_009045.1 predicted protein 94662 4839577 PICST_31869 Pichia stipitis CBS 6054 predicted protein XP_001384672.2 92815 D 322104 CDS PICST_67737 150865710 4839578 complement(96570..99413) 1 NC_009045.1 go_component: membrane; go_process: proton transport; vacuolar ATPase V0 domain subunit a 99413 VPH3 4839578 VPH3 Pichia stipitis CBS 6054 vacuolar ATPase V0 domain subunit a XP_001385041.2 96570 R 322104 CDS PICST_61124 150865451 4839063 100351..102753 1 NC_009045.1 HMG-CoA Reductase Degradation responsible for ER-associated degradation (ERAD) of numerous ER-resident proteins; protein responsible for ER-associated degradation (ERAD) of numerous ER-resident proteins 102753 HRD3 4839063 HRD3 Pichia stipitis CBS 6054 protein responsible for ER-associated degradation (ERAD) of numerous ER-resident proteins XP_001384673.2 100351 D 322104 CDS PICST_72477 126136301 4839579 108367..109914 1 NC_009045.1 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); 57 kDa nucleolar protein involved in the pre-rRNA processing steps that lead to formation of 18 S rRNA; interacts with Nop1p; part of small (ribosomal) subunit (SSU) processosome; U3 snoRNP protein 109914 NOP58 4839579 NOP58 Pichia stipitis CBS 6054 part of small (ribosomal) subunit (SSU) processosome; U3 snoRNP protein XP_001384674.1 108367 D 322104 CDS PICST_31875 150865711 4839580 complement(110204..112492) 1 NC_009045.1 predicted protein 112492 4839580 PICST_31875 Pichia stipitis CBS 6054 predicted protein XP_001385042.2 110204 R 322104 CDS PICST_36152 150865452 4839064 113103..113657 1 NC_009045.1 predicted protein 113657 4839064 PICST_36152 Pichia stipitis CBS 6054 predicted protein XP_001384675.2 113103 D 322104 CDS PICST_83871 150865712 4839581 complement(join(113823..113890,113921..115018,115100..115910,115923..116531)) 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; aspartic proteinase precursor 116531 PKH2 4839581 PKH2 Pichia stipitis CBS 6054 aspartic proteinase precursor XP_001385043.2 113823 R 322104 CDS PICST_89481 150865453 4839065 117792..120230 1 NC_009045.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; mitochondrial intermediate peptidase involved in protein import 120230 OCT1 4839065 OCT1 Pichia stipitis CBS 6054 mitochondrial intermediate peptidase involved in protein import XP_001384676.2 117792 D 322104 CDS PICST_89811 150865454 4839582 121739..123445 1 NC_009045.1 go_component: membrane; go_process: transport; high-affinity glutamine permease 123445 GNP2 4839582 GNP2 Pichia stipitis CBS 6054 high-affinity glutamine permease XP_001384677.2 121739 D 322104 CDS PICST_60912 150865455 4839365 124455..125852 1 NC_009045.1 similar to bacterial seryl-tRNA synthase; go_function: tRNA ligase activity; ATP binding; serine-tRNA ligase activity; go_process: tRNA aminoacylation for protein translation; seryl-tRNA aminoacylation; seryl-tRNA synthase-like protein 125852 DIA4 4839365 DIA4 Pichia stipitis CBS 6054 seryl-tRNA synthase-like protein XP_001384678.2 124455 D 322104 CDS PICST_31881 150865713 4839366 complement(<125991..127322) 1 NC_009045.1 predicted protein 127322 4839366 PICST_31881 Pichia stipitis CBS 6054 predicted protein XP_001385044.2 <125991 R 322104 CDS PICST_77984 150865714 4839066 complement(127641..130868) 1 NC_009045.1 predicted protein 130868 4839066 PICST_77984 Pichia stipitis CBS 6054 predicted protein XP_001385045.2 127641 R 322104 CDS PICST_89638 126137045 4839146 complement(join(131794..131843,134899..136729)) 1 NC_009045.1 multicopper ferro-O2- oxidoreductase involved in high-affinity iron uptake; go_function: copper ion binding; Multicopper oxidase 136729 FET3.1 4839146 FET3.1 Pichia stipitis CBS 6054 Multicopper oxidase XP_001385046.1 131794 R 322104 CDS PICST_46178 150865456 4839147 139837..141174 1 NC_009045.1 predicted protein 141174 4839147 PICST_46178 Pichia stipitis CBS 6054 predicted protein XP_001384679.2 139837 D 322104 CDS PICST_46734 150865715 4839367 complement(141366..142682) 1 NC_009045.1 go_function: catalytic activity; ubiquitin activating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 142682 4839367 PICST_46734 Pichia stipitis CBS 6054 predicted protein XP_001385047.2 141366 R 322104 CDS PICST_47366 150865716 4839148 complement(146204..146476) 1 NC_009045.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein 146476 4839148 PICST_47366 Pichia stipitis CBS 6054 predicted protein XP_001385048.2 146204 R 322104 CDS PICST_61121 150865457 4839149 join(147109..147855,147892..148941) 1 NC_009045.1 go_function: nucleic acid binding; nuclease activity; go_process: DNA metabolism; predicted protein 148941 4839149 PICST_61121 Pichia stipitis CBS 6054 predicted protein XP_001384680.2 147109 D 322104 CDS PICST_78377 150865458 4839368 149250..150167 1 NC_009045.1 mitochondrial ribosomal protein of small subunit 150167 PET123 4839368 PET123 Pichia stipitis CBS 6054 mitochondrial ribosomal protein of small subunit XP_001384681.2 149250 D 322104 CDS PICST_83864 150865459 4839369 join(150634..152013,152032..152580) 1 NC_009045.1 nuclear envelope protein dispensable for mitotic spindle pole body duplication, but required for insertion of nascent spindle pole bodies into the nuclear envelope. ndc1 parental spindle pole bodies form monopolar spindles in mitosis. Required for meiosis II.; nuclear envelope protein 152580 NDC1 4839369 NDC1 Pichia stipitis CBS 6054 nuclear envelope protein XP_001384682.2 150634 D 322104 CDS PICST_78097 150865717 4839370 complement(152789..154750) 1 NC_009045.1 go_component: integral to membrane; go_function: solute:hydrogen antiporter activity; go_process: regulation of pH; monovalent cation:H+ antiporter, CPA1 family (NHX1) 154750 NHX1 4839370 NHX1 Pichia stipitis CBS 6054 monovalent cation:H+ antiporter, CPA1 family (NHX1) XP_001385049.2 152789 R 322104 CDS PICST_31893 150865460 4839150 157235..158584 1 NC_009045.1 member of triose phosphate translocator family 158584 SLY41.1 4839150 SLY41.1 Pichia stipitis CBS 6054 member of triose phosphate translocator family XP_001384683.2 157235 D 322104 CDS PICST_78537 150865718 4839371 complement(158752..159657) 1 NC_009045.1 Mitochondrial tricarboxylate/dicarboxylate carrier protein; go_component: membrane; go_function: binding; go_process: transport; mitochondrial carrier protein 159657 YHM2 4839371 YHM2 Pichia stipitis CBS 6054 mitochondrial carrier protein XP_001385050.2 158752 R 322104 CDS PICST_89723 150865461 4839151 160839..162221 1 NC_009045.1 Protein transport protein SEC9 plasma membrane t-SNARE 162221 SEC9 4839151 SEC9 Pichia stipitis CBS 6054 Protein transport protein SEC9 plasma membrane t-SNARE XP_001384684.2 160839 D 322104 CDS PICST_72518 126136323 4839372 164156..165412 1 NC_009045.1 go_function: oxidoreductase activity; oleate delta-12 desaturase 165412 ODD1 4839372 ODD1 Pichia stipitis CBS 6054 oleate delta-12 desaturase XP_001384685.1 164156 D 322104 CDS PICST_60928 150865462 4839373 166994..167725 1 NC_009045.1 go_component: integral to membrane; go_function: protein-S-isoprenylcysteine O-methyltransferase activity; go_process: C-terminal protein amino acid methylation; predicted protein 167725 4839373 PICST_60928 Pichia stipitis CBS 6054 predicted protein XP_001384686.2 166994 D 322104 CDS PICST_67752 126137055 4839688 complement(167890..168420) 1 NC_009045.1 go_component: cytoskeleton; go_process: regulation of actin filament polymerization; subunit of the Arp2/3 complex 168420 ARC18 4839688 ARC18 Pichia stipitis CBS 6054 subunit of the Arp2/3 complex XP_001385051.1 167890 R 322104 CDS PICST_60422 150865463 4839152 join(169584..169617,169663..169885,169940..171503) 1 NC_009045.1 Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits 171503 CDC20 4839152 CDC20 Pichia stipitis CBS 6054 Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits XP_001384687.2 169584 D 322104 CDS PICST_60474 150865464 4839689 join(172169..172489,172508..172808,172845..173005) 1 NC_009045.1 predicted protein 173005 4839689 PICST_60474 Pichia stipitis CBS 6054 predicted protein XP_001384688.2 172169 D 322104 CDS PICST_59787 126136331 4839690 173454..>174443 1 NC_009045.1 protease substrate recruitment factor >174443 CIC1 4839690 CIC1 Pichia stipitis CBS 6054 protease substrate recruitment factor XP_001384689.1 173454 D 322104 CDS PICST_60390 150865719 4839691 complement(177289..>178230) 1 NC_009045.1 go_function: catalytic activity; triacylglycerol lipase activity; go_process: lipid metabolism; triacylglycerol lipase >178230 LIP11 4839691 LIP11 Pichia stipitis CBS 6054 triacylglycerol lipase XP_001385052.2 177289 R 322104 CDS PICST_4276 150865465 4839153 <180568..>181920 1 NC_009045.1 hypothetical protein of unknown function >181920 4839153 PICST_4276 Pichia stipitis CBS 6054 hypothetical protein of unknown function XP_001384690.2 <180568 D 322104 CDS PICST_46225 150865720 4839692 complement(182131..183213) 1 NC_009045.1 pH-response regulator protein palI/RIM9 183213 RIM9 4839692 RIM9 Pichia stipitis CBS 6054 pH-response regulator protein palI/RIM9 XP_001385053.2 182131 R 322104 CDS PICST_47423 126136335 4839154 183945..185042 1 NC_009045.1 go_function: inositol or phosphatidylinositol phosphatase activity; 3'(2')5'-bisphosphate nucleotidase 185042 MET22 4839154 MET22 Pichia stipitis CBS 6054 3'(2')5'-bisphosphate nucleotidase XP_001384691.1 183945 D 322104 CDS PICST_31907 150865721 4839693 complement(join(185143..187212,187345..187767)) 1 NC_009045.1 go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent RNA helicase DHR2 (DEAH-box RNA helicase DHR2) (Helicase JA2) 187767 DHR2 4839693 DHR2 Pichia stipitis CBS 6054 ATP-dependent RNA helicase DHR2 (DEAH-box RNA helicase DHR2) (Helicase JA2) XP_001385054.2 185143 R 322104 CDS PICST_31908 150865466 4839467 188251..189909 1 NC_009045.1 Tyrosyl-tRNA synthetase, mitochondrial precursor (Tyrosine--tRNA ligase) (TyrRS); go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; tyrosyl-tRNA synthetase 189909 MSY1 4839467 MSY1 Pichia stipitis CBS 6054 tyrosyl-tRNA synthetase XP_001384692.2 188251 D 322104 CDS PICST_78456 126136339 4839694 191021..191503 1 NC_009045.1 Peroxiredoxin HYR1 (Hydrogen peroxide resistance protein 1) (Oxidant receptor peroxidase 1) (Glutathione peroxidase 3) (Phospholipid hydroperoxide glutathione peroxidase 3) (PHGPx3); go_function: glutathione peroxidase activity; go_process: response to oxidative stress; glutathione peroxidase 191503 GPX2 4839694 GPX2 Pichia stipitis CBS 6054 glutathione peroxidase XP_001384693.1 191021 D 322104 CDS PICST_60249 150865467 4839695 join(193467..194206,194225..194680,194765..>194846) 1 NC_009045.1 Serine/threonine kinase similar to casein kinase II and other serine/threonine protein kinases; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine protein kinase 194680 KSP1 4839695 KSP1 Pichia stipitis CBS 6054 serine/threonine protein kinase XP_001384694.2 193467 D 322104 CDS PICST_78299 126136343 4839696 196539..197738 1 NC_009045.1 go_function: ketol-acid reductoisomerase activity; go_process: branched chain family amino acid biosynthesis; mitochondrial ketol-acid reductoisomerase 197738 ILV5 4839696 ILV5 Pichia stipitis CBS 6054 mitochondrial ketol-acid reductoisomerase XP_001384695.1 196539 D 322104 CDS PICST_46030 126136345 4839486 198557..199327 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S3aE (S1) 199327 RSP3 4839486 RSP3 Pichia stipitis CBS 6054 40S ribosomal protein S3aE (S1) XP_001384696.1 198557 D 322104 CDS PICST_67757 150865468 4839487 join(199859..200072,200289..200293,200507..200638,200762..202213,202280..202498,202559..202810) 1 NC_009045.1 conserved hypothetical protein 202810 4839487 PICST_67757 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384697.2 199859 D 322104 CDS PICST_59735 150865722 4839488 complement(203078..203923) 1 NC_009045.1 conserved hypothetical protein 203923 4839488 PICST_59735 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385055.2 203078 R 322104 CDS PICST_67758 150865723 4839468 complement(204833..206983) 1 NC_009045.1 conserved hypothetical protein of low complexity 206983 4839468 PICST_67758 Pichia stipitis CBS 6054 conserved hypothetical protein of low complexity XP_001385056.2 204833 R 322104 CDS PICST_27631 126136349 4839469 <208717..>209136 1 NC_009045.1 conserved hypothetical protein >209136 4839469 PICST_27631 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384698.1 <208717 D 322104 CDS PICST_31917 150865724 4839489 complement(209591..210319) 1 NC_009045.1 hypothetical protein 210319 4839489 PICST_31917 Pichia stipitis CBS 6054 hypothetical protein XP_001385057.2 209591 R 322104 CDS PICST_31918 150865725 4839470 complement(211168..212229) 1 NC_009045.1 hypothetical protein 212229 4839470 PICST_31918 Pichia stipitis CBS 6054 hypothetical protein XP_001385058.2 211168 R 322104 CDS PICST_46944 150865726 4839471 complement(213595..215937) 1 NC_009045.1 go_function: DNA binding; DNA topoisomerase type I activity; go_process: DNA topological change; DNA unwinding; DNA topoisomerase I 215937 TOP1 4839471 TOP1 Pichia stipitis CBS 6054 DNA topoisomerase I XP_001385059.2 213595 R 322104 CDS PICST_84246 126136351 4839472 218314..220023 1 NC_009045.1 go_component: membrane; go_process: transport; arginine permease 220023 CAN2 4839472 CAN2 Pichia stipitis CBS 6054 arginine permease XP_001384699.1 218314 D 322104 CDS PICST_89784 150865727 4839490 complement(220443..221615) 1 NC_009045.1 involved in control of DNA replication; putative beta-glucosidase Septation protein SUN4 precursor (Soluble cell wall protein 3) SIM1 (putative) 221615 SUN4 4839490 SUN4 Pichia stipitis CBS 6054 putative beta-glucosidase Septation protein SUN4 precursor (Soluble cell wall protein 3) SIM1 (putative) XP_001385060.2 220443 R 322104 CDS PICST_60734 150865469 4839473 <228531..229064 1 NC_009045.1 predicted protein 229064 4839473 PICST_60734 Pichia stipitis CBS 6054 predicted protein XP_001384700.2 <228531 D 322104 CDS PICST_46234 126137075 4839491 complement(229269..229949) 1 NC_009045.1 predicted protein 229949 4839491 PICST_46234 Pichia stipitis CBS 6054 predicted protein XP_001385061.1 229269 R 322104 CDS PICST_31924 150865470 4839474 234010..236634 1 NC_009045.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 236634 4839474 PICST_31924 Pichia stipitis CBS 6054 predicted protein XP_001384701.2 234010 D 322104 CDS PICST_47431 150865471 4839492 237466..238164 1 NC_009045.1 go_component: integral to membrane; go_function: copper ion transporter activity; go_process: copper ion transport; predicted protein 238164 4839492 PICST_47431 Pichia stipitis CBS 6054 predicted protein XP_001384702.2 237466 D 322104 CDS PICST_60298 150865728 4839601 complement(join(238391..240381,240430..241780)) 1 NC_009045.1 go_component: exocyst; go_process: vesicle docking during exocytosis; protein transport; predicted protein 241780 4839601 PICST_60298 Pichia stipitis CBS 6054 predicted protein XP_001385062.2 238391 R 322104 CDS PICST_47140 150865472 4839475 join(<242666..242897,243045..244264) 1 NC_009045.1 predicted protein 244264 4839475 PICST_47140 Pichia stipitis CBS 6054 predicted protein XP_001384703.2 <242666 D 322104 CDS PICST_46950 126137079 4839602 complement(244440..245294) 1 NC_009045.1 predicted protein 245294 4839602 PICST_46950 Pichia stipitis CBS 6054 predicted protein XP_001385063.1 244440 R 322104 CDS PICST_78267 126136361 4839476 246810..248060 1 NC_009045.1 phosphoglycerate kinase [EC:2.7.2.3] [KO:K00927]; go_function: phosphoglycerate kinase activity; go_process: glycolysis; 3-phosphoglycerate kinase 248060 PGK1 4839476 PGK1 Pichia stipitis CBS 6054 3-phosphoglycerate kinase XP_001384704.1 246810 D 322104 CDS PICST_78107 150865729 4839603 complement(248211..250172) 1 NC_009045.1 go_function: catalytic activity; go_process: metabolism; predicted protein 250172 4839603 PICST_78107 Pichia stipitis CBS 6054 predicted protein XP_001385064.2 248211 R 322104 CDS PICST_31932 150865730 4839477 complement(251157..253076) 1 NC_009045.1 predicted protein 253076 4839477 PICST_31932 Pichia stipitis CBS 6054 predicted protein XP_001385065.2 251157 R 322104 CDS PICST_84097 150865473 4839671 join(253683..253778,253803..255149) 1 NC_009045.1 Cytochrome oxidase assembly factor COX15
Posttranslational modification, protein turnover, chaperones; go_component: membrane; go_process: protein complex assembly; Cytochrome c oxidase assembly protein COX15 255149 COX15 4839671 COX15 Pichia stipitis CBS 6054 Cytochrome c oxidase assembly protein COX15 XP_001384705.2 253683 D 322104 CDS PICST_47043 150865731 4839604 complement(join(255247..255591,255643..>257019)) 1 NC_009045.1 predicted protein 255591 4839604 PICST_47043 Pichia stipitis CBS 6054 predicted protein XP_001385066.2 255247 R 322104 CDS PICST_60136 150865474 4839672 258097..258918 1 NC_009045.1 predicted protein 258918 4839672 PICST_60136 Pichia stipitis CBS 6054 predicted protein XP_001384706.2 258097 D 322104 CDS PICST_47492 150865732 4839605 complement(259140..260789) 1 NC_009045.1 predicted protein 260789 4839605 PICST_47492 Pichia stipitis CBS 6054 predicted protein XP_001385067.2 259140 R 322104 CDS PICST_59957 126136367 4839673 <261193..261654 1 NC_009045.1 predicted protein 261654 4839673 PICST_59957 Pichia stipitis CBS 6054 predicted protein XP_001384707.1 <261193 D 322104 CDS PICST_60110 150865733 4839606 complement(join(261955..262247,262278..263627,263988..264033)) 1 NC_009045.1 A phosphatase required for mitotic exit Cdc14p is in the nucleolus until liberated by the FEAR and Mitotic Exit Network in anaphase it can then act on key substrates to effect a decrease in CDK/B-cyclin activity and mitotic exit; go_function: protein tyrosine/serine/threonine phosphatase activity; go_process: protein amino acid dephosphorylation; Protein tyrosine phosphatase CDC14 264033 CDC14 4839606 CDC14 Pichia stipitis CBS 6054 Protein tyrosine phosphatase CDC14 XP_001385068.2 261955 R 322104 CDS PICST_31938 150865475 4839674 join(264786..264788,264843..264936,265038..265290,265341..265398) 1 NC_009045.1 cofilin/tropomyosin-type actin-binding protein 265398 CTA1 4839674 CTA1 Pichia stipitis CBS 6054 cofilin/tropomyosin-type actin-binding protein XP_001384708.2 264786 D 322104 CDS PICST_47482 126136371 4839607 join(265804..265824,266336..266770) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 266770 4839607 PICST_47482 Pichia stipitis CBS 6054 predicted protein XP_001384709.1 265804 D 322104 CDS PICST_83789 150865476 4839608 join(267188..267509,267540..268348) 1 NC_009045.1 go_component: nucleus; go_function: transcription factor activity; go_process: DNA repair; regulation of transcription, DNA-dependent; predicted protein 268348 4839608 PICST_83789 Pichia stipitis CBS 6054 predicted protein XP_001384710.2 267188 D 322104 CDS PICST_36192 150865734 4839609 complement(268547..268951) 1 NC_009045.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 268951 4839609 PICST_36192 Pichia stipitis CBS 6054 predicted protein XP_001385069.2 268547 R 322104 CDS PICST_78481 150865735 4839675 complement(join(269226..269623,269950..270004)) 1 NC_009045.1 go_function: zinc ion binding; hydrolase activity; cytosine deaminase 270004 FCY1 4839675 FCY1 Pichia stipitis CBS 6054 cytosine deaminase XP_001385070.2 269226 R 322104 CDS PICST_83988 150865736 4839676 complement(join(270814..270958,270977..275526)) 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 275526 4839676 PICST_83988 Pichia stipitis CBS 6054 predicted protein XP_001385071.2 270814 R 322104 CDS PICST_36195 126136375 4839677 276319..277005 1 NC_009045.1 predicted protein 277005 4839677 PICST_36195 Pichia stipitis CBS 6054 predicted protein XP_001384711.1 276319 D 322104 CDS PICST_23467 126136377 4839502 <277397..>277729 1 NC_009045.1 predicted protein >277729 4839502 PICST_23467 Pichia stipitis CBS 6054 predicted protein XP_001384712.1 <277397 D 322104 CDS PICST_83776 150865737 4839503 complement(join(277906..279203,279249..279669)) 1 NC_009045.1 predicted protein 279669 4839503 PICST_83776 Pichia stipitis CBS 6054 predicted protein XP_001385072.2 277906 R 322104 CDS PICST_46048 150865477 4839678 join(280160..280211,280320..282586) 1 NC_009045.1 predicted protein 282586 4839678 PICST_46048 Pichia stipitis CBS 6054 predicted protein XP_001384713.2 280160 D 322104 CDS PICST_60920 150865738 4839504 complement(282831..284540) 1 NC_009045.1 A(acid, azole) Q(quinidine) Resistance multidrug resistance transporter 284540 AQR2 4839504 AQR2 Pichia stipitis CBS 6054 A(acid, azole) Q(quinidine) Resistance multidrug resistance transporter XP_001385073.2 282831 R 322104 CDS PICST_83738 150865478 4839679 286776..288032 1 NC_009045.1 go_function: acyltransferase activity; go_process: metabolism; predicted protein 288032 4839679 PICST_83738 Pichia stipitis CBS 6054 predicted protein XP_001384714.2 286776 D 322104 CDS PICST_46586 150865479 4839505 288367..289137 1 NC_009045.1 predicted protein 289137 4839505 PICST_46586 Pichia stipitis CBS 6054 predicted protein XP_001384715.2 288367 D 322104 CDS PICST_167 150865480 4839506 289565..>294076 1 NC_009045.1 predicted protein >294076 4839506 PICST_167 Pichia stipitis CBS 6054 predicted protein XP_001384716.2 289565 D 322104 CDS PICST_47351 150865481 4839507 join(294143..295732,295802..301123) 1 NC_009045.1 with sequence similarity to human protein TRRAP which we have isolated as an essential cofactor of c-Myc; go_function: phosphotransferase activity, alcohol group as acceptor; Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily TRA1 301123 TRA12 4839507 TRA12 Pichia stipitis CBS 6054 Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily TRA1 XP_001384717.2 294143 D 322104 CDS PICST_60679 126137101 4839508 complement(join(302283..302693,302792..303001)) 1 NC_009045.1 predicted protein 303001 4839508 PICST_60679 Pichia stipitis CBS 6054 predicted protein XP_001385074.1 302283 R 322104 CDS PICST_83901 150865482 4839391 303649..305613 1 NC_009045.1 predicted protein 305613 4839391 PICST_83901 Pichia stipitis CBS 6054 predicted protein XP_001384718.2 303649 D 322104 CDS PICST_67775 150865483 4839509 306602..308089 1 NC_009045.1 predicted protein 308089 4839509 PICST_67775 Pichia stipitis CBS 6054 predicted protein XP_001384719.2 306602 D 322104 CDS PICST_31954 150865739 4839510 complement(309288..309890) 1 NC_009045.1 predicted protein 309890 4839510 PICST_31954 Pichia stipitis CBS 6054 predicted protein XP_001385075.2 309288 R 322104 CDS PICST_72561 150865484 4839392 310649..311857 1 NC_009045.1 predicted protein 311857 4839392 PICST_72561 Pichia stipitis CBS 6054 predicted protein XP_001384720.2 310649 D 322104 CDS PICST_31956 150865485 4839511 312185..>313093 1 NC_009045.1 predicted protein >313093 4839511 PICST_31956 Pichia stipitis CBS 6054 predicted protein XP_001384721.2 312185 D 322104 CDS PICST_31957 150865740 4839512 complement(313251..314468) 1 NC_009045.1 NADH:flavin oxidoreductase (old yellow enzyme); go_function: oxidoreductase activity; go_process: electron transport; NADPH dehydrogenase 314468 OYE2.9 4839512 OYE2.9 Pichia stipitis CBS 6054 NADPH dehydrogenase XP_001385076.2 313251 R 322104 CDS PICST_31958 150865741 4839393 complement(314798..316009) 1 NC_009045.1 NAPDH dehydrogenase (old yellow enzyme), isoform 2 (OYE23); go_function: oxidoreductase activity; go_process: electron transport; NAPDH dehydrogenase (old yellow enzyme), isoform 2 316009 OYE2.4 4839393 OYE2.4 Pichia stipitis CBS 6054 NAPDH dehydrogenase (old yellow enzyme), isoform 2 XP_001385077.2 314798 R 322104 CDS PICST_89722 126137109 4839394 complement(316300..317520) 1 NC_009045.1 NADH:flavin oxidoreductase (old yellow enzyme); go_function: oxidoreductase activity; go_process: electron transport; NAPDH dehydrogenase (old yellow enzyme) (EPB1) 317520 OYE2.1 4839394 OYE2.1 Pichia stipitis CBS 6054 NAPDH dehydrogenase (old yellow enzyme) (EPB1) XP_001385078.1 316300 R 322104 CDS PICST_47438 150865742 4839395 complement(318271..319653) 1 NC_009045.1 predicted protein 319653 4839395 PICST_47438 Pichia stipitis CBS 6054 predicted protein XP_001385079.2 318271 R 322104 CDS PICST_31961 150865743 4839396 complement(320035..321159) 1 NC_009045.1 go_process: protein folding; dnaJ homolog in endoplasmic reticulum 321159 SCJ1 4839396 SCJ1 Pichia stipitis CBS 6054 dnaJ homolog in endoplasmic reticulum XP_001385080.2 320035 R 322104 CDS PICST_47192 150865486 4839397 join(<321864..322693,322760..323492) 1 NC_009045.1 predicted protein 323492 4839397 PICST_47192 Pichia stipitis CBS 6054 predicted protein XP_001384722.2 <321864 D 322104 CDS PICST_67778 150865744 4839630 complement(323662..326811) 1 NC_009045.1 ADR1-like Zn finger domain at N-terminus all other portion of the protein has changed as compared to Saccharomyces cerevisiae; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; ADR1-like Zn finger domain protein 326811 ADR1.2 4839630 ADR1.2 Pichia stipitis CBS 6054 ADR1-like Zn finger domain protein XP_001385081.2 323662 R 322104 CDS PICST_60589 150865745 4839398 complement(join(329473..330175,330194..330480)) 1 NC_009045.1 predicted protein 330480 4839398 PICST_60589 Pichia stipitis CBS 6054 predicted protein XP_001385082.2 329473 R 322104 CDS PICST_78175 150865487 4839399 join(332610..333423,333466..333590,333627..334442) 1 NC_009045.1 predicted protein 334442 4839399 PICST_78175 Pichia stipitis CBS 6054 predicted protein XP_001384723.2 332610 D 322104 CDS PICST_31966 150865488 4839631 335340..336950 1 NC_009045.1 predicted protein 336950 4839631 PICST_31966 Pichia stipitis CBS 6054 predicted protein XP_001384724.2 335340 D 322104 CDS PICST_14247 150865746 4839632 complement(<341936..>345118) 1 NC_009045.1 MItochondrial DNA Polymerase catalytic subunit: DNA polymerase gamma (Mitochondrial DNA polymerase catalytic subunit) (DPOG); go_function: DNA binding; DNA-directed DNA polymerase activity; go_process: DNA replication; mitochondrial DNA polymerase catalytic subunit >345118 MIP1 4839632 MIP1 Pichia stipitis CBS 6054 mitochondrial DNA polymerase catalytic subunit XP_001385083.2 <341936 R 322104 CDS PICST_60748 126136403 4839137 346504..347517 1 NC_009045.1 predicted protein 347517 4839137 PICST_60748 Pichia stipitis CBS 6054 predicted protein XP_001384725.1 346504 D 322104 CDS PICST_60470 150865747 4839633 complement(join(347955..348416,348480..349318,349391..349787,350040..350356,350453..350504)) 1 NC_009045.1 predicted protein 350504 4839633 PICST_60470 Pichia stipitis CBS 6054 predicted protein XP_001385084.2 347955 R 322104 CDS PICST_67781 150865489 4839138 353024..354343 1 NC_009045.1 Vesicle coat complex AP-3 354343 VCC3.4 4839138 VCC3.4 Pichia stipitis CBS 6054 Vesicle coat complex AP-3 XP_001384726.2 353024 D 322104 CDS PICST_78463 126136407 4839634 join(355405..355419,355959..356414) 1 NC_009045.1 Eukaryotic translation initiation factor 5A-2 (eIF-5A 2) (eIF-4D) (Hypusine containing protein HP2); go_function: translation initiation factor activity; Eukaryotic translation initiation factor 5A (eIF-5A) (eIF-4D) 356414 IF5A 4839634 IF5A Pichia stipitis CBS 6054 Eukaryotic translation initiation factor 5A (eIF-5A) (eIF-4D) XP_001384727.1 355405 D 322104 CDS PICST_67783 150865490 4839635 358725..360380 1 NC_009045.1 predicted protein 360380 4839635 PICST_67783 Pichia stipitis CBS 6054 predicted protein XP_001384728.2 358725 D 322104 CDS PICST_84007 150865491 4839636 join(361446..361653,361702..362265,362302..362849) 1 NC_009045.1 predicted protein 362849 4839636 PICST_84007 Pichia stipitis CBS 6054 predicted protein XP_001384729.2 361446 D 322104 CDS PICST_67785 150865492 4839637 join(363412..363475,363723..364180) 1 NC_009045.1 RNA polymerase II holoenzyme/mediator subunit 364180 ROX3 4839637 ROX3 Pichia stipitis CBS 6054 RNA polymerase II holoenzyme/mediator subunit XP_001384730.2 363412 D 322104 CDS PICST_61104 150865748 4839638 complement(join(364708..365451,365518..366160,366188..370944,370962..371030,371044..371910,371929..372188,372318..372687)) 1 NC_009045.1 Putative mitochondrial protein of unknown function; mitochondrial protein 372687 FMP27 4839638 FMP27 Pichia stipitis CBS 6054 mitochondrial protein XP_001385085.2 364708 R 322104 CDS PICST_83982 126136415 4839139 join(374273,374829..375223) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 375223 4839139 PICST_83982 Pichia stipitis CBS 6054 predicted protein XP_001384731.1 374273 D 322104 CDS PICST_89585 150865749 4839639 complement(join(375658..375914,376164..378327)) 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 378327 4839639 PICST_89585 Pichia stipitis CBS 6054 predicted protein XP_001385086.2 375658 R 322104 CDS PICST_78379 150865750 4839140 complement(381080..381895) 1 NC_009045.1 predicted protein 381895 4839140 PICST_78379 Pichia stipitis CBS 6054 predicted protein XP_001385087.2 381080 R 322104 CDS PICST_89908 150865751 4839141 complement(384240..386126) 1 NC_009045.1 predicted protein 386126 4839141 PICST_89908 Pichia stipitis CBS 6054 predicted protein XP_001385088.2 384240 R 322104 CDS PICST_31980 150865493 4839142 join(388400..388904,388944..390511) 1 NC_009045.1 predicted protein 390511 4839142 PICST_31980 Pichia stipitis CBS 6054 predicted protein XP_001384732.2 388400 D 322104 CDS PICST_31981 150865752 4839640 complement(390560..391483) 1 NC_009045.1 pyridoxine-pyridoxal-pyridoxamine kinase; protein involved in bud site selection 391483 BUD17 4839640 BUD17 Pichia stipitis CBS 6054 protein involved in bud site selection XP_001385089.2 390560 R 322104 CDS PICST_72775 150865494 4839143 392281..>393441 1 NC_009045.1 protein involved in vesicle formation at the endoplasmic reticulum >393441 SED4 4839143 SED4 Pichia stipitis CBS 6054 protein involved in vesicle formation at the endoplasmic reticulum XP_001384733.2 392281 D 322104 CDS PICST_31983 150865495 4839641 join(395624..395975,396021..397093) 1 NC_009045.1 go_component: nucleus; go_function: DNA binding; DNA repair protein and ATPase 397093 RAD18 4839641 RAD18 Pichia stipitis CBS 6054 DNA repair protein and ATPase XP_001384734.2 395624 D 322104 CDS PICST_47526 150865496 4839680 397952..>399283 1 NC_009045.1 go_component: membrane; go_function: transporter activity; go_process: transport; Probable formate transporter 1 (Formate channel 1) >399283 FOC1 4839680 FOC1 Pichia stipitis CBS 6054 Probable formate transporter 1 (Formate channel 1) XP_001384735.2 397952 D 322104 CDS PICST_84074 126136425 4839681 join(400645..401658,401701..402432) 1 NC_009045.1 go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent RNA helicase DBP9 (DEAD-box protein 9) 402432 DBP9 4839681 DBP9 Pichia stipitis CBS 6054 ATP-dependent RNA helicase DBP9 (DEAD-box protein 9) XP_001384736.1 400645 D 322104 CDS PICST_31986 126137133 4839682 complement(402608..403261) 1 NC_009045.1 predicted protein 403261 4839682 PICST_31986 Pichia stipitis CBS 6054 predicted protein XP_001385090.1 402608 R 322104 CDS PICST_46042 150865497 4839144 405016..406548 1 NC_009045.1 putative multidrug resistance protein (TPO1); go_component: integral to membrane; go_function: transporter activity; go_process: transport; multidrug resistance protein 10 406548 MDR110 4839144 MDR110 Pichia stipitis CBS 6054 multidrug resistance protein 10 XP_001384737.2 405016 D 322104 CDS PICST_47034 150865498 4839683 <407836..408207 1 NC_009045.1 predicted protein 408207 4839683 PICST_47034 Pichia stipitis CBS 6054 predicted protein XP_001384738.2 <407836 D 322104 CDS PICST_31989 150865499 4839684 join(408717..408742,408818..409244) 1 NC_009045.1 predicted protein 409244 4839684 PICST_31989 Pichia stipitis CBS 6054 predicted protein XP_001384739.2 408717 D 322104 CDS PICST_31991 126136433 4839685 412502..413344 1 NC_009045.1 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase 413344 COQ3 4839685 COQ3 Pichia stipitis CBS 6054 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase XP_001384740.1 412502 D 322104 CDS PICST_46785 150865753 4839686 complement(413641..414300) 1 NC_009045.1 involved in vacuolar protein sorting (SNF7); go_function: molecular function unknown; protein involved in vacuolar protein sorting 414300 VPS60 4839686 VPS60 Pichia stipitis CBS 6054 protein involved in vacuolar protein sorting XP_001385091.2 413641 R 322104 CDS PICST_84240 150865500 4839145 join(414916..414933,415014..415334,415392..>416135) 1 NC_009045.1 go_process: DNA repair; predicted protein 415334 4839145 PICST_84240 Pichia stipitis CBS 6054 predicted protein XP_001384741.2 414916 D 322104 CDS PICST_31994 150865501 4839687 417244..418659 1 NC_009045.1 predicted protein 418659 4839687 PICST_31994 Pichia stipitis CBS 6054 predicted protein XP_001384742.2 417244 D 322104 CDS PICST_46395 150865754 4839338 complement(418753..421083) 1 NC_009045.1 positive regulator of GAL genes; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; lactose regulatory protein LAC9 and GAL4-like protein 421083 LAC9 4839338 LAC9 Pichia stipitis CBS 6054 lactose regulatory protein LAC9 and GAL4-like protein XP_001385092.2 418753 R 322104 CDS PICST_89732 150865502 4839210 423816..425732 1 NC_009045.1 go_function: malic enzyme activity; go_process: malate metabolism; mitochondrial malate dehydrogenase 425732 MAE1 4839210 MAE1 Pichia stipitis CBS 6054 mitochondrial malate dehydrogenase XP_001384743.2 423816 D 322104 CDS PICST_65737 126136441 4839339 426877..427626 1 NC_009045.1 go_function: ATP binding; adenylate kinase activity; Adenylate kinase (ATP-AMP transphosphorylase) 427626 ADK1 4839339 ADK1 Pichia stipitis CBS 6054 Adenylate kinase (ATP-AMP transphosphorylase) XP_001384744.1 426877 D 322104 CDS PICST_89727 150865755 4839340 complement(join(427880..428792,428937..429150,429208..429661)) 1 NC_009045.1 predicted protein 429661 4839340 PICST_89727 Pichia stipitis CBS 6054 predicted protein XP_001385093.2 427880 R 322104 CDS PICST_59900 150865503 4839211 <430481..>431302 1 NC_009045.1 predicted protein >431302 4839211 PICST_59900 Pichia stipitis CBS 6054 predicted protein XP_001384745.2 <430481 D 322104 CDS PICST_60316 126136445 4839341 432209..433114 1 NC_009045.1 lacks the HMG1-like mitochondrial HM protein putative mitochondrial carrier protein; go_component: membrane; go_function: binding; go_process: transport; high copy suppressor of abf2 433114 YHM1 4839341 YHM1 Pichia stipitis CBS 6054 high copy suppressor of abf2 XP_001384746.1 432209 D 322104 CDS PICST_60705 126136447 4839342 436896..437093 1 NC_009045.1 predicted protein 437093 4839342 PICST_60705 Pichia stipitis CBS 6054 predicted protein XP_001384747.1 436896 D 322104 CDS PICST_47132 150865756 4839343 complement(437379..438995) 1 NC_009045.1 predicted protein 438995 4839343 PICST_47132 Pichia stipitis CBS 6054 predicted protein XP_001385094.2 437379 R 322104 CDS PICST_32001 150865504 4839212 439395..441869 1 NC_009045.1 hypothetical protein 441869 4839212 PICST_32001 Pichia stipitis CBS 6054 hypothetical protein XP_001384748.2 439395 D 322104 CDS PICST_61259 126137143 4839344 complement(442144..>442563) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: RNA binding; structural constituent of ribosome; go_process: protein biosynthesis; predicted protein >442563 4839344 PICST_61259 Pichia stipitis CBS 6054 predicted protein XP_001385095.1 442144 R 322104 CDS PICST_60529 126137145 4839213 complement(444005..>444469) 1 NC_009045.1 predicted protein >444469 4839213 PICST_60529 Pichia stipitis CBS 6054 predicted protein XP_001385096.1 444005 R 322104 CDS PICST_46278 150865505 4839214 446218..447336 1 NC_009045.1 Glycogen synthase kinase-3 serine/threonine/tyrosine protein kinase involved in chromosome segregation; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine/tyrosine protein kinase involved in chromosome segregation 447336 MCK1 4839214 MCK1 Pichia stipitis CBS 6054 serine/threonine/tyrosine protein kinase involved in chromosome segregation XP_001384749.2 446218 D 322104 CDS PICST_36220 150865757 4839181 complement(447951..448484) 1 NC_009045.1 predicted protein 448484 4839181 PICST_36220 Pichia stipitis CBS 6054 predicted protein XP_001385097.2 447951 R 322104 CDS PICST_32006 150865758 4839215 complement(448715..449818) 1 NC_009045.1 WD domain protein likely involved in chromatin remodeling not highly conserved - similar to mammalian protein; WD domain protein 449818 SWD3 4839215 SWD3 Pichia stipitis CBS 6054 WD domain protein XP_001385098.2 448715 R 322104 CDS PICST_89641 150865759 4839216 complement(450200..451840) 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 451840 4839216 PICST_89641 Pichia stipitis CBS 6054 predicted protein XP_001385099.2 450200 R 322104 CDS PICST_47013 150865506 4839217 <453001..454098 1 NC_009045.1 mitochondrial protein with homology to MRS2 (LPE10); go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; mitochondrial MRS2-like protein 454098 MRS2.2 4839217 MRS2.2 Pichia stipitis CBS 6054 mitochondrial MRS2-like protein XP_001384750.2 <453001 D 322104 CDS PICST_60893 150865760 4839182 complement(join(<454347..455840,455874..456382,456470..457115)) 1 NC_009045.1 predicted protein 457115 4839182 PICST_60893 Pichia stipitis CBS 6054 predicted protein XP_001385100.2 <454347 R 322104 CDS PICST_6332 150865507 4839218 457552..>458601 1 NC_009045.1 minichromosome maintenance syntenic homolog of Saccharomyces cerevisiae YDR318W (MCM21); minichromosome maintenance protein >458601 MCM21 4839218 MCM21 Pichia stipitis CBS 6054 minichromosome maintenance protein XP_001384751.2 457552 D 322104 CDS PICST_72214 150865761 4839183 complement(458912..463918) 1 NC_009045.1 go_component: clathrin vesicle coat; predicted protein 463918 4839183 PICST_72214 Pichia stipitis CBS 6054 predicted protein XP_001385101.2 458912 R 322104 CDS PICST_89559 150865508 4839513 465392..466693 1 NC_009045.1 predicted protein 466693 4839513 PICST_89559 Pichia stipitis CBS 6054 predicted protein XP_001384752.2 465392 D 322104 CDS PICST_78360 126136459 4839184 468337..469254 1 NC_009045.1 go_function: catalytic activity; go_process: metabolism; predicted protein 469254 4839184 PICST_78360 Pichia stipitis CBS 6054 predicted protein XP_001384753.1 468337 D 322104 CDS PICST_36226 126137157 4839185 complement(469531..469926) 1 NC_009045.1 predicted protein 469926 4839185 PICST_36226 Pichia stipitis CBS 6054 predicted protein XP_001385102.1 469531 R 322104 CDS PICST_46201 150865509 4839514 join(<471785..471905,472005..473969,474024..474412) 1 NC_009045.1 hypothetical protein 474412 FUN21 4839514 FUN21 Pichia stipitis CBS 6054 hypothetical protein XP_001384754.2 <471785 D 322104 CDS PICST_46661 126136463 4839186 474906..475829 1 NC_009045.1 go_component: nucleus; go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; DNA-dependent RNA polymerase I subunit A43 475829 RPS43 4839186 RPS43 Pichia stipitis CBS 6054 DNA-dependent RNA polymerase I subunit A43 XP_001384755.1 474906 D 322104 CDS PICST_59952 150865762 4839187 complement(476112..477314) 1 NC_009045.1 essential for splicing of group II introns; go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; mitochondrial magnesium ion transporter 477314 MRS2.1 4839187 MRS2.1 Pichia stipitis CBS 6054 mitochondrial magnesium ion transporter XP_001385103.2 476112 R 322104 CDS PICST_60924 126137161 4839515 complement(join(478160..478819,478941..478961)) 1 NC_009045.1 go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar proton pump E subunit) 478961 VMA4 4839515 VMA4 Pichia stipitis CBS 6054 vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar proton pump E subunit) XP_001385104.1 478160 R 322104 CDS PICST_32017 126137163 4839516 complement(479427..480281) 1 NC_009045.1 go_component: membrane; go_function: binding; go_process: transport; Mitochondrial carnitine carrier 480281 CRC1 4839516 CRC1 Pichia stipitis CBS 6054 Mitochondrial carnitine carrier XP_001385105.1 479427 R 322104 CDS PICST_60226 150865763 4839517 complement(join(481348..481795,481823..482042,482073..483451,483620..483972)) 1 NC_009045.1 Spindle pole body component SPC98; spindle pole body component 483972 SPC98 4839517 SPC98 Pichia stipitis CBS 6054 spindle pole body component XP_001385106.2 481348 R 322104 CDS PICST_89623 126137167 4839518 complement(484560..486281) 1 NC_009045.1 go_function: transaminase activity; 5-aminolevulinate synthase activity; go_process: biosynthesis; heme biosynthesis; 5-aminolevulinate synthase, mitochondrial precursor (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) 486281 HEM1 4839518 HEM1 Pichia stipitis CBS 6054 5-aminolevulinate synthase, mitochondrial precursor (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) XP_001385107.1 484560 R 322104 CDS PICST_67803 150865510 4839519 488597..489607 1 NC_009045.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; secondary alcohol dehydrogenase (SADH2) 489607 SAD2 4839519 SAD2 Pichia stipitis CBS 6054 secondary alcohol dehydrogenase (SADH2) XP_001384756.2 488597 D 322104 CDS PICST_36233 126136467 4839188 491714..493627 1 NC_009045.1 go_component: membrane; go_function: transporter activity; go_process: oligopeptide transport; proton-dependent oligopeptide transporter, POT family 493627 PTR2 4839188 PTR2 Pichia stipitis CBS 6054 proton-dependent oligopeptide transporter, POT family XP_001384757.1 491714 D 322104 CDS PICST_46975 126137169 4839118 complement(join(494430..495742,498380..498464)) 1 NC_009045.1 go_function: acid phosphatase activity; secreted acid phosphatase 498464 PHO5 4839118 PHO5 Pichia stipitis CBS 6054 secreted acid phosphatase XP_001385108.1 494430 R 322104 CDS PICST_46121 150865764 4839520 complement(499128..500522) 1 NC_009045.1 go_function: acid phosphatase activity; acid phosphatase 500522 PHO12 4839520 PHO12 Pichia stipitis CBS 6054 acid phosphatase XP_001385109.2 499128 R 322104 CDS PICST_32024 150865765 4839127 complement(join(501244..504354,504418..504423)) 1 NC_009045.1 similar to Serologically defined colon cancer antigen 1 (Antigen NY-CO-1) [homo sapiens]; highly conserved hypothetical protein Predicted RNA-binding 504423 SDCG1 4839127 SDCG1 Pichia stipitis CBS 6054 highly conserved hypothetical protein Predicted RNA-binding XP_001385110.2 501244 R 322104 CDS PICST_32025 126136469 4839128 504939..505919 1 NC_009045.1 NAD-dependent deacetylase HST2 (Homologous to SIR2 protein 2); go_component: chromatin silencing complex; go_function: DNA binding; go_process: chromatin silencing; regulation of transcription, DNA-dependent; putative histone deacetylase-like protein 505919 HST2 4839128 HST2 Pichia stipitis CBS 6054 putative histone deacetylase-like protein XP_001384758.1 504939 D 322104 CDS PICST_60045 150865766 4839119 complement(505984..>506901) 1 NC_009045.1 highly conserved hypothetical protein >506901 4839119 PICST_60045 Pichia stipitis CBS 6054 highly conserved hypothetical protein XP_001385111.2 505984 R 322104 CDS PICST_32027 126137177 4839129 complement(508100..508693) 1 NC_009045.1 predicted protein 508693 4839129 PICST_32027 Pichia stipitis CBS 6054 predicted protein XP_001385112.1 508100 R 322104 CDS PICST_32028 126136471 4839130 509532..>509993 1 NC_009045.1 predicted protein >509993 4839130 PICST_32028 Pichia stipitis CBS 6054 predicted protein XP_001384759.1 509532 D 322104 CDS PICST_60438 150865511 4839120 join(510096..512301,512371..>512462) 1 NC_009045.1 highly conserved hypothetical protein 512301 4839120 PICST_60438 Pichia stipitis CBS 6054 highly conserved hypothetical protein XP_001384760.2 510096 D 322104 CDS PICST_72398 126136475 4839121 513354..515126 1 NC_009045.1 henylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) (SYFB); henylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) 515126 SYF2 4839121 SYF2 Pichia stipitis CBS 6054 henylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) XP_001384761.1 513354 D 322104 CDS PICST_89948 150865512 4839122 515951..516574 1 NC_009045.1 involved in transport and fusion of post-Golgi secretory vesicles to the plasma membrane; go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein 516574 SEC4 4839122 SEC4 Pichia stipitis CBS 6054 GTP-binding protein XP_001384762.2 515951 D 322104 CDS PICST_46630 126137179 4839123 complement(517258..517662) 1 NC_009045.1 Similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 NUFM [homo sapiens]; go_component: mitochondrial inner membrane; go_function: oxidoreductase activity, acting on NADH or NADPH; go_process: electron transport; NADH-ubiquinone oxidoreductase 517662 NUFM 4839123 NUFM Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase XP_001385113.1 517258 R 322104 CDS PICST_36241 150865767 4839131 complement(518087..518746) 1 NC_009045.1 WW domain containing protein interacting with Metacaspase (MCA1) involved in response to dessication; WW domain containing protein interacting with Metacaspase (MCA1) 518746 WWM1 4839131 WWM1 Pichia stipitis CBS 6054 WW domain containing protein interacting with Metacaspase (MCA1) XP_001385114.2 518087 R 322104 CDS PICST_60444 150865768 4839132 complement(join(519141..520632,520651..520695,520723..520864,520919..521341,521480..522479)) 1 NC_009045.1 Required for nuclear and mitochondrial transmission to daughter buds; go_process: intracellular signaling cascade; intermediate filament protein 522479 MDM1 4839132 MDM1 Pichia stipitis CBS 6054 intermediate filament protein XP_001385115.2 519141 R 322104 CDS PICST_32035 150865769 4839133 complement(522726..523475) 1 NC_009045.1 hypothetical protein 523475 4839133 PICST_32035 Pichia stipitis CBS 6054 hypothetical protein XP_001385116.2 522726 R 322104 CDS PICST_47305 150865513 4839134 join(<524284..525138,525205..526863) 1 NC_009045.1 U4/U6 snRNA-associated splicing factor PRP24 (U4/U6 snRNP protein); U4/U6 snRNA-associated splicing factor 526863 PRP24 4839134 PRP24 Pichia stipitis CBS 6054 U4/U6 snRNA-associated splicing factor XP_001384763.2 <524284 D 322104 CDS PICST_77997 150865514 4839124 527207..530488 1 NC_009045.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; cytosolic leucyl tRNA synthetase 530488 CDC60 4839124 CDC60 Pichia stipitis CBS 6054 cytosolic leucyl tRNA synthetase XP_001384764.2 527207 D 322104 CDS PICST_67807 150865515 4839125 531639..533981 1 NC_009045.1 F box protein, for ubiquitin- dependent degradation 533981 CDC4 4839125 CDC4 Pichia stipitis CBS 6054 F box protein, for ubiquitin- dependent degradation XP_001384765.2 531639 D 322104 CDS PICST_46379 150865770 4839126 complement(534169..535671) 1 NC_009045.1 hypothetical protein 535671 4839126 PICST_46379 Pichia stipitis CBS 6054 hypothetical protein XP_001385117.2 534169 R 322104 CDS PICST_60739 150865516 4839135 536334..537164 1 NC_009045.1 homologue of mammalian SRP19; go_component: signal recognition particle (sensu Eukaryota); go_function: RNA binding; 7S RNA binding; go_process: protein targeting; signal recognition particle subunit 537164 SEC65 4839135 SEC65 Pichia stipitis CBS 6054 signal recognition particle subunit XP_001384766.2 536334 D 322104 CDS PICST_60178 150865517 4839251 538376..541597 1 NC_009045.1 putative Ca2+ ATPase similar to mammalian Sodium/potassium-transporting ATPase alpha chain (Sodium pump) (Na+/K+ ATPase); go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; catalytic activity; go_process: cation transport; metabolism; putative Ca2+ ATPase 541597 PMR2 4839251 PMR2 Pichia stipitis CBS 6054 putative Ca2+ ATPase XP_001384767.2 538376 D 322104 CDS PICST_78051 126136489 4839252 542561..544870 1 NC_009045.1 go_function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity; go_process: methionine biosynthesis; methionine-synthesizing 5- methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 544870 MET6 4839252 MET6 Pichia stipitis CBS 6054 methionine-synthesizing 5- methyltetrahydropteroyltriglutamate--homocysteine methyltransferase XP_001384768.1 542561 D 322104 CDS PICST_67809 150865518 4839253 join(545591..545778,545884..545888,545910..546814) 1 NC_009045.1 isolated as a suppressor of the lethality caused by overexpression of the phosphoprotein phosphatase 1 catalytic subuniut encoded by GLC7; suppressor of lethality protein 546814 SHP1 4839253 SHP1 Pichia stipitis CBS 6054 suppressor of lethality protein XP_001384769.2 545591 D 322104 CDS PICST_32045 150865771 4839254 complement(548046..549098) 1 NC_009045.1 predicted protein 549098 4839254 PICST_32045 Pichia stipitis CBS 6054 predicted protein XP_001385118.2 548046 R 322104 CDS PICST_32048 150865519 4839136 556192..557304 1 NC_009045.1 Third step in pyrimidine biosynthesis pathway; go_function: hydrolase activity; Dihydroorotase 557304 URA4 4839136 URA4 Pichia stipitis CBS 6054 Dihydroorotase XP_001384770.2 556192 D 322104 CDS PICST_65748 150865520 4839255 join(559475..560981,563084..563088,565781..565816) 1 NC_009045.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; glycerophosphoinositol permease 565816 GIT2 4839255 GIT2 Pichia stipitis CBS 6054 glycerophosphoinositol permease XP_001384771.2 559475 D 322104 CDS PICST_60333 150865521 4839256 566785..567324 1 NC_009045.1 Diadenosine and Diphosphoinositol Polyphosphate Phosphohydrolase 567324 DDP1 4839256 DDP1 Pichia stipitis CBS 6054 Diadenosine and Diphosphoinositol Polyphosphate Phosphohydrolase XP_001384772.2 566785 D 322104 CDS PICST_67811 150865772 4839257 complement(567476..568456) 1 NC_009045.1 predicted protein 568456 4839257 PICST_67811 Pichia stipitis CBS 6054 predicted protein XP_001385119.2 567476 R 322104 CDS PICST_32054 126136499 4839095 join(569801..569805,570379..570452,570519..570599,570703..570920) 1 NC_009045.1 predicted protein 570920 4839095 PICST_32054 Pichia stipitis CBS 6054 predicted protein XP_001384773.1 569801 D 322104 CDS PICST_89662 126136501 4839356 571744..572589 1 NC_009045.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; B-type subunit of proteasome 572589 PRE4 4839356 PRE4 Pichia stipitis CBS 6054 B-type subunit of proteasome XP_001384774.1 571744 D 322104 CDS PICST_84281 150865522 4839357 join(575371..576412,576473..576585) 1 NC_009045.1 3',5'-cyclic-nucleotide phosphodiesterase (PDE1) (PDEase) (3':5'-CNP); go_function: cAMP-specific phosphodiesterase activity; go_process: cAMP catabolism; 3',5'-cyclic-nucleotide phosphodiesterase (PDEase) (3':5'-CNP) 576585 CNA1 4839357 CNA1 Pichia stipitis CBS 6054 3',5'-cyclic-nucleotide phosphodiesterase (PDEase) (3':5'-CNP) XP_001384775.2 575371 D 322104 CDS PICST_90035 150865773 4839358 complement(576847..578502) 1 NC_009045.1 predicted protein 578502 4839358 PICST_90035 Pichia stipitis CBS 6054 predicted protein XP_001385120.2 576847 R 322104 CDS PICST_32059 150865523 4839096 583529..583915 1 NC_009045.1 predicted protein 583915 4839096 PICST_32059 Pichia stipitis CBS 6054 predicted protein XP_001384776.2 583529 D 322104 CDS PICST_61082 126136507 4839359 585037..585522 1 NC_009045.1 predicted protein 585522 4839359 PICST_61082 Pichia stipitis CBS 6054 predicted protein XP_001384777.1 585037 D 322104 CDS PICST_59814 150865524 4839360 join(586128..586581,586645..586802) 1 NC_009045.1 predicted protein 586802 4839360 PICST_59814 Pichia stipitis CBS 6054 predicted protein XP_001384778.2 586128 D 322104 CDS PICST_89595 150865774 4839361 complement(join(587039..587784,587911..588517,588605..588763)) 1 NC_009045.1 predicted protein 588763 4839361 PICST_89595 Pichia stipitis CBS 6054 predicted protein XP_001385121.2 587039 R 322104 CDS PICST_47494 150865525 4839097 <589846..591273 1 NC_009045.1 go_component: vacuole; go_function: aminopeptidase I activity; go_process: proteolysis and peptidolysis; predicted protein 591273 4839097 PICST_47494 Pichia stipitis CBS 6054 predicted protein XP_001384779.2 <589846 D 322104 CDS PICST_67817 150865526 4839362 592358..593893 1 NC_009045.1 go_process: protein folding; predicted protein 593893 4839362 PICST_67817 Pichia stipitis CBS 6054 predicted protein XP_001384780.2 592358 D 322104 CDS PICST_46396 150865527 4839363 join(<595549..595833,595918..597828) 1 NC_009045.1 predicted protein 597828 4839363 PICST_46396 Pichia stipitis CBS 6054 predicted protein XP_001384781.2 <595549 D 322104 CDS PICST_83705 150865775 4839364 complement(join(597907..598534,598664..599699,599796..600212,600240..600381)) 1 NC_009045.1 nuclear pore protein 600381 NUP4 4839364 NUP4 Pichia stipitis CBS 6054 nuclear pore protein XP_001385122.2 597907 R 322104 CDS PICST_60417 126136517 4839098 601860..602177 1 NC_009045.1 predicted protein 602177 4839098 PICST_60417 Pichia stipitis CBS 6054 predicted protein XP_001384782.1 601860 D 322104 CDS PICST_22565 150865528 4839715 <602707..>603201 1 NC_009045.1 go_function: molecular function unknown; predicted protein >603201 4839715 PICST_22565 Pichia stipitis CBS 6054 predicted protein XP_001384783.2 <602707 D 322104 CDS PICST_67819 150865776 4839716 complement(603584..605917) 1 NC_009045.1 hypothetical unknown protein 605917 4839716 PICST_67819 Pichia stipitis CBS 6054 hypothetical unknown protein XP_001385123.2 603584 R 322104 CDS PICST_32069 150865529 4839099 609304..611148 1 NC_009045.1 Beta-hexosaminidase precursor (N-acetyl-beta-glucosaminidase) (Beta-GlcNAcase) (Beta-N-acetylhexosaminidase) Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; go_function: beta-N-acetylhexosaminidase activity; go_process: carbohydrate metabolism; Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 611148 HEX1 4839099 HEX1 Pichia stipitis CBS 6054 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase XP_001384784.2 609304 D 322104 CDS PICST_46113 126136523 4839717 <612595..612828 1 NC_009045.1 predicted protein 612828 4839717 PICST_46113 Pichia stipitis CBS 6054 predicted protein XP_001384785.1 <612595 D 322104 CDS PICST_65754 150865777 4839718 complement(612899..614434) 1 NC_009045.1 go_function: lyase activity; go_process: amino acid metabolism; threonine synthase 614434 THR4 4839718 THR4 Pichia stipitis CBS 6054 threonine synthase XP_001385124.2 612899 R 322104 CDS PICST_59994 150865530 4839100 join(<615138..615380,615447..616364) 1 NC_009045.1 predicted protein 616364 4839100 PICST_59994 Pichia stipitis CBS 6054 predicted protein XP_001384786.2 <615138 D 322104 CDS PICST_67821 150865778 4839719 complement(617142..618155) 1 NC_009045.1 Gluconate transport-inducing protein similar to camp-independent regulatory protein PAC2; Gluconate transport-inducing protein 618155 PTH2 4839719 PTH2 Pichia stipitis CBS 6054 Gluconate transport-inducing protein XP_001385125.2 617142 R 322104 CDS PICST_78208 150865779 4839101 complement(620244..621818) 1 NC_009045.1 go_function: catalytic activity; go_process: acetyl-CoA metabolism; Acetyl-CoA hydrolase (Acetyl-CoA deacylase) (Acetyl-CoA acylase) 621818 ACH1 4839101 ACH1 Pichia stipitis CBS 6054 Acetyl-CoA hydrolase (Acetyl-CoA deacylase) (Acetyl-CoA acylase) XP_001385126.2 620244 R 322104 CDS PICST_32075 150865780 4839102 complement(624197..626905) 1 NC_009045.1 predicted protein 626905 4839102 PICST_32075 Pichia stipitis CBS 6054 predicted protein XP_001385127.2 624197 R 322104 CDS PICST_46516 150865781 4839103 complement(627169..628224) 1 NC_009045.1 go_function: ATP binding; molecular function unknown; predicted protein 628224 4839103 PICST_46516 Pichia stipitis CBS 6054 predicted protein XP_001385128.2 627169 R 322104 CDS PICST_46961 126136527 4839104 628569..629585 1 NC_009045.1 predicted protein 629585 4839104 PICST_46961 Pichia stipitis CBS 6054 predicted protein XP_001384787.1 628569 D 322104 CDS PICST_47531 150865531 4839720 629876..631234 1 NC_009045.1 Required for an essential posttranslational stage in assembly of cytochrome oxidase; go_component: membrane; Heme A farnesyltransferase 631234 COX10 4839720 COX10 Pichia stipitis CBS 6054 Heme A farnesyltransferase XP_001384788.2 629876 D 322104 CDS PICST_83761 150865532 4839721 632153..632854 1 NC_009045.1 predicted protein 632854 4839721 PICST_83761 Pichia stipitis CBS 6054 predicted protein XP_001384789.2 632153 D 322104 CDS PICST_46807 150865533 4839722 633025..638118 1 NC_009045.1 predicted protein 638118 4839722 PICST_46807 Pichia stipitis CBS 6054 predicted protein XP_001384790.2 633025 D 322104 CDS PICST_32081 150865534 4839723 638241..639398 1 NC_009045.1 predicted protein 639398 4839723 PICST_32081 Pichia stipitis CBS 6054 predicted protein XP_001384791.2 638241 D 322104 CDS PICST_32082 150865782 4839724 complement(639479..640522) 1 NC_009045.1 predicted protein 640522 4839724 PICST_32082 Pichia stipitis CBS 6054 predicted protein XP_001385129.2 639479 R 322104 CDS PICST_32083 150865535 4839105 640696..643194 1 NC_009045.1 go_function: ATP binding; AAA ATPase 643194 VCP1 4839105 VCP1 Pichia stipitis CBS 6054 AAA ATPase XP_001384792.2 640696 D 322104 CDS PICST_32085 150865783 4839725 complement(646334..646810) 1 NC_009045.1 predicted protein 646810 4839725 PICST_32085 Pichia stipitis CBS 6054 predicted protein XP_001385130.2 646334 R 322104 CDS PICST_32086 150865536 4839106 join(648587..652550,652630..652652) 1 NC_009045.1 go_process: DNA recombination; predicted protein 652652 4839106 PICST_32086 Pichia stipitis CBS 6054 predicted protein XP_001384793.2 648587 D 322104 CDS PICST_46124 126137215 4839478 complement(669917..670462) 1 NC_009045.1 predicted protein 670462 4839478 PICST_46124 Pichia stipitis CBS 6054 predicted protein XP_001385131.1 669917 R 322104 CDS PICST_59958 150865784 4839075 complement(670590..>671996) 1 NC_009045.1 predicted protein >671996 4839075 PICST_59958 Pichia stipitis CBS 6054 predicted protein XP_001385132.2 670590 R 322104 CDS PICST_36268 150865537 4839076 join(672788..674459,674559..674788) 1 NC_009045.1 go_function: signal transducer activity; predicted protein 674788 4839076 PICST_36268 Pichia stipitis CBS 6054 predicted protein XP_001384794.2 672788 D 322104 CDS PICST_83918 126137219 4839479 complement(join(674910..676378,676415..676514)) 1 NC_009045.1 go_function: GTP binding; go_process: protein biosynthesis; predicted protein 676514 4839479 PICST_83918 Pichia stipitis CBS 6054 predicted protein XP_001385133.1 674910 R 322104 CDS PICST_60934 150865785 4839077 complement(join(<677216..677379,677524..679015,679075..679124,679255..679636)) 1 NC_009045.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 679636 4839077 PICST_60934 Pichia stipitis CBS 6054 predicted protein XP_001385134.2 <677216 R 322104 CDS PICST_36271 150865786 4839078 complement(679883..681487) 1 NC_009045.1 predicted protein 681487 4839078 PICST_36271 Pichia stipitis CBS 6054 predicted protein XP_001385135.2 679883 R 322104 CDS PICST_67826 126136543 4839079 join(682494..682533,682583..684123) 1 NC_009045.1 go_component: integral to membrane; general amino acid permease 684123 GAP1.5 4839079 GAP1.5 Pichia stipitis CBS 6054 general amino acid permease XP_001384795.1 682494 D 322104 CDS PICST_46289 150865538 4839480 685245..686564 1 NC_009045.1 predicted protein 686564 4839480 PICST_46289 Pichia stipitis CBS 6054 predicted protein XP_001384796.2 685245 D 322104 CDS PICST_67827 126137225 4839481 complement(join(686957..687041,687164..687414)) 1 NC_009045.1 predicted protein 687414 4839481 PICST_67827 Pichia stipitis CBS 6054 predicted protein XP_001385136.1 686957 R 322104 CDS PICST_60854 126137227 4839080 complement(688206..689729) 1 NC_009045.1 transporter of Nicotinic Acid 689729 TNA12 4839080 TNA12 Pichia stipitis CBS 6054 transporter of Nicotinic Acid XP_001385137.1 688206 R 322104 CDS PICST_78426 126136547 4839081 691524..692210 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 692210 4839081 PICST_78426 Pichia stipitis CBS 6054 predicted protein XP_001384797.1 691524 D 322104 CDS PICST_60420 150865787 4839482 complement(692479..694299) 1 NC_009045.1 Monocarboxylate transporter (ESBP6); Monocarboxylate transporter 694299 MCH2.2 4839482 MCH2.2 Pichia stipitis CBS 6054 Monocarboxylate transporter XP_001385138.2 692479 R 322104 CDS PICST_60303 150865539 4839082 695996..697297 1 NC_009045.1 go_function: ATP binding; predicted protein 697297 4839082 PICST_60303 Pichia stipitis CBS 6054 predicted protein XP_001384798.2 695996 D 322104 CDS PICST_47120 150865788 4839483 complement(697415..698383) 1 NC_009045.1 predicted protein 698383 4839483 PICST_47120 Pichia stipitis CBS 6054 predicted protein XP_001385139.2 697415 R 322104 CDS PICST_46368 126137233 4839083 complement(<698936..>699169) 1 NC_009045.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein >699169 4839083 PICST_46368 Pichia stipitis CBS 6054 predicted protein XP_001385140.1 <698936 R 322104 CDS PICST_46480 150865540 4839084 699670..700959 1 NC_009045.1 predicted protein 700959 4839084 PICST_46480 Pichia stipitis CBS 6054 predicted protein XP_001384799.2 699670 D 322104 CDS PICST_78316 150865541 4839484 701381..702496 1 NC_009045.1 Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor (UQCR2); go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor 702496 UQC2 4839484 UQC2 Pichia stipitis CBS 6054 Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial precursor XP_001384800.2 701381 D 322104 CDS PICST_60409 126136555 4839485 702935..703408 1 NC_009045.1 go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription, DNA-dependent; subunit common to RNA polymerases I, II, and III 703408 RPO26 4839485 RPO26 Pichia stipitis CBS 6054 subunit common to RNA polymerases I, II, and III XP_001384801.1 702935 D 322104 CDS PICST_60109 150865789 4839410 complement(703617..704144) 1 NC_009045.1 likely the regulatory light chain for the type II myosin, Myo1p. Mlc2p binds to an IQ motif of Myo1p. Mlc2p localization to the bud neck depends on Myo1p; Mlc2p 704144 MLC2 4839410 MLC2 Pichia stipitis CBS 6054 Mlc2p XP_001385141.2 703617 R 322104 CDS PICST_36282 150865542 4839456 join(704412..704591,704652..705707) 1 NC_009045.1 go_component: actin cytoskeleton; go_function: structural constituent of cytoskeleton; centractin- actin-related protein of the dynactin complex 705707 ARP1 4839456 ARP1 Pichia stipitis CBS 6054 centractin- actin-related protein of the dynactin complex XP_001384802.2 704412 D 322104 CDS PICST_47473 126137237 4839411 complement(705797..706453) 1 NC_009045.1 uracil phosphoribosyltransferase Regulation of the pyrimidine salvage pathway (UPRTase); go_process: nucleoside metabolism; uracil phosphoribosyltransferase 706453 FUR1 4839411 FUR1 Pichia stipitis CBS 6054 uracil phosphoribosyltransferase XP_001385142.1 705797 R 322104 CDS PICST_46810 126137239 4839457 complement(join(706970..707103,707337..>707532)) 1 NC_009045.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein 707103 4839457 PICST_46810 Pichia stipitis CBS 6054 predicted protein XP_001385143.1 706970 R 322104 CDS PICST_32112 126137241 4839458 complement(708002..708535) 1 NC_009045.1 predicted protein 708535 4839458 PICST_32112 Pichia stipitis CBS 6054 predicted protein XP_001385144.1 708002 R 322104 CDS PICST_32113 150865790 4839459 complement(709379..710551) 1 NC_009045.1 predicted protein 710551 4839459 PICST_32113 Pichia stipitis CBS 6054 predicted protein XP_001385145.2 709379 R 322104 CDS PICST_32114 126136559 4839460 711120..711725 1 NC_009045.1 predicted protein 711725 4839460 PICST_32114 Pichia stipitis CBS 6054 predicted protein XP_001384803.1 711120 D 322104 CDS PICST_32115 150865543 4839412 713581..715227 1 NC_009045.1 predicted protein 715227 4839412 PICST_32115 Pichia stipitis CBS 6054 predicted protein XP_001384804.2 713581 D 322104 CDS PICST_59991 150865791 4839413 complement(join(717364..718315,718505..718608)) 1 NC_009045.1 predicted protein 718608 4839413 PICST_59991 Pichia stipitis CBS 6054 predicted protein XP_001385146.2 717364 R 322104 CDS PICST_89600 126137247 4839461 complement(719214..720824) 1 NC_009045.1 predicted protein 720824 4839461 PICST_89600 Pichia stipitis CBS 6054 predicted protein XP_001385147.1 719214 R 322104 CDS PICST_60304 126137249 4839462 complement(join(721694..723087,723495..723663)) 1 NC_009045.1 urea transport protein 723663 DUR8 4839462 DUR8 Pichia stipitis CBS 6054 urea transport protein XP_001385148.1 721694 R 322104 CDS PICST_60142 150865544 4839463 724692..725732 1 NC_009045.1 predicted protein 725732 4839463 PICST_60142 Pichia stipitis CBS 6054 predicted protein XP_001384805.2 724692 D 322104 CDS PICST_32120 150865792 4839414 complement(join(725973..726920,727098..727508)) 1 NC_009045.1 family 17 glucosidase SCW11 precursor (Soluble cell wall protein 11) 727508 SCW11 4839414 SCW11 Pichia stipitis CBS 6054 family 17 glucosidase SCW11 precursor (Soluble cell wall protein 11) XP_001385149.2 725973 R 322104 CDS PICST_78259 126137253 4839464 complement(728831..730144) 1 NC_009045.1 go_component: membrane; go_function: phosphatidate cytidylyltransferase activity; go_process: phospholipid biosynthesis; predicted protein 730144 4839464 PICST_78259 Pichia stipitis CBS 6054 predicted protein XP_001385150.1 728831 R 322104 CDS PICST_32122 150865793 4839465 complement(731411..732028) 1 NC_009045.1 predicted protein 732028 4839465 PICST_32122 Pichia stipitis CBS 6054 predicted protein XP_001385151.2 731411 R 322104 CDS PICST_84157 126136565 4839466 join(733594..733624,733995..734293) 1 NC_009045.1 go_function: translation initiation factor activity; go_process: translational initiation; predicted protein 734293 4839466 PICST_84157 Pichia stipitis CBS 6054 predicted protein XP_001384806.1 733594 D 322104 CDS PICST_32124 150865545 4839415 join(734452..734455,734552..734589,734829..735725) 1 NC_009045.1 predicted protein 735725 4839415 PICST_32124 Pichia stipitis CBS 6054 predicted protein XP_001384807.2 734452 D 322104 CDS PICST_46913 126137257 4839416 complement(735766..>736710) 1 NC_009045.1 methyltransferase family protein >736710 SKB1 4839416 SKB1 Pichia stipitis CBS 6054 methyltransferase family protein XP_001385152.1 735766 R 322104 CDS PICST_84107 126136569 4839269 738448..738756 1 NC_009045.1 go_function: cyclin-dependent protein kinase activity; go_process: cell cycle; Cyclin-dependent kinases regulatory subunit (Cell division control protein CKS1) 738756 CKS1 4839269 CKS1 Pichia stipitis CBS 6054 Cyclin-dependent kinases regulatory subunit (Cell division control protein CKS1) XP_001384808.1 738448 D 322104 CDS PICST_32127 150865546 4839417 join(739442..739713,739753..746536) 1 NC_009045.1 1-phosphatidylinositol 3-kinase; go_function: phosphotransferase activity, alcohol group as acceptor; cell cycle checkpoint protein 746536 MEC1 4839417 MEC1 Pichia stipitis CBS 6054 cell cycle checkpoint protein XP_001384809.2 739442 D 322104 CDS PICST_83810 150865794 4839418 complement(join(<749397..750965,751089..751359,751384..751505)) 1 NC_009045.1 conserved hypothetical protein 751505 4839418 PICST_83810 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385153.2 <749397 R 322104 CDS PICST_59908 150865795 4839270 complement(join(753833..753931,754001..754268,754306..754322,754352..754538,754569..754707,754741..754798)) 1 NC_009045.1 predicted protein 754798 4839270 PICST_59908 Pichia stipitis CBS 6054 predicted protein XP_001385154.2 753833 R 322104 CDS PICST_60537 126137263 4839271 complement(760467..>761435) 1 NC_009045.1 go_function: ATP binding; DNA replication factor C >761435 RCF3 4839271 RCF3 Pichia stipitis CBS 6054 DNA replication factor C XP_001385155.1 760467 R 322104 CDS PICST_61009 150865796 4839272 complement(join(761697..763114,763154..763334)) 1 NC_009045.1 integral plasma membrane protein 763334 MID1 4839272 MID1 Pichia stipitis CBS 6054 integral plasma membrane protein XP_001385156.2 761697 R 322104 CDS PICST_67835 150865797 4839273 complement(764001..766193) 1 NC_009045.1 hypothetical protein 766193 4839273 PICST_67835 Pichia stipitis CBS 6054 hypothetical protein XP_001385157.2 764001 R 322104 CDS PICST_26508 126136573 4839274 join(<769096..769473,769579..769753,770021..>770322) 1 NC_009045.1 predicted protein 769753 4839274 PICST_26508 Pichia stipitis CBS 6054 predicted protein XP_001384810.1 <769096 D 322104 CDS PICST_32134 150865547 4839419 771184..772911 1 NC_009045.1 go_function: damaged DNA binding; ATP binding; go_process: mismatch repair; predicted protein 772911 4839419 PICST_32134 Pichia stipitis CBS 6054 predicted protein XP_001384811.2 771184 D 322104 CDS PICST_84188 126136577 4839221 779343..780404 1 NC_009045.1 p21-activated serine/threonine protein kinase Signal transduction mechanisms; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine kinase 780404 CST20 4839221 CST20 Pichia stipitis CBS 6054 serine/threonine kinase XP_001384812.1 779343 D 322104 CDS PICST_60849 150865798 4839222 complement(780583..781818) 1 NC_009045.1 Arylacetamide deacetylase; go_function: catalytic activity; hypothetical membrane protein 781818 ACD1 4839222 ACD1 Pichia stipitis CBS 6054 hypothetical membrane protein XP_001385158.2 780583 R 322104 CDS PICST_84311 150865548 4839275 784569..786290 1 NC_009045.1 predicted phosphatidyl synthase; phosphatidyl synthase 786290 PPS2 4839275 PPS2 Pichia stipitis CBS 6054 phosphatidyl synthase XP_001384813.2 784569 D 322104 CDS PICST_65767 126137271 4839223 complement(786501..789020) 1 NC_009045.1 beta glucosidase family 3; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; beta-glucosidase 789020 BGL7 4839223 BGL7 Pichia stipitis CBS 6054 beta-glucosidase XP_001385159.1 786501 R 322104 CDS PICST_36298 150865799 4839276 complement(790304..791191) 1 NC_009045.1 predicted protein 791191 4839276 PICST_36298 Pichia stipitis CBS 6054 predicted protein XP_001385160.2 790304 R 322104 CDS PICST_46658 150865549 4839277 791640..792683 1 NC_009045.1 Geranylgeranyl pyrophosphate synthetase (GGPP synthetase) (GGPPSase) (Geranylgeranyl diphosphate synthase) [Includes: Dimethylallyltranstransferase Geranyltranstransferase Farnesyltranstransferase ]; go_process: isoprenoid biosynthesis; geranylgeranyl diphosphate synthase 792683 BTS1 4839277 BTS1 Pichia stipitis CBS 6054 geranylgeranyl diphosphate synthase XP_001384814.2 791640 D 322104 CDS PICST_32142 126137275 4839224 complement(792958..793707) 1 NC_009045.1 predicted protein 793707 4839224 PICST_32142 Pichia stipitis CBS 6054 predicted protein XP_001385161.1 792958 R 322104 CDS PICST_78373 150865550 4839278 793939..794844 1 NC_009045.1 go_function: methyltransferase activity; go_process: metabolism; diphthamide biosynthesis methyltransferase 794844 DPH5 4839278 DPH5 Pichia stipitis CBS 6054 diphthamide biosynthesis methyltransferase XP_001384815.2 793939 D 322104 CDS PICST_46428 150865800 4839225 complement(795011..796195) 1 NC_009045.1 predicted protein 796195 4839225 PICST_46428 Pichia stipitis CBS 6054 predicted protein XP_001385162.2 795011 R 322104 CDS PICST_47398 150865801 4839279 complement(796910..799312) 1 NC_009045.1 go_function: DNA binding; zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type 799312 YIN0 4839279 YIN0 Pichia stipitis CBS 6054 zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type XP_001385163.2 796910 R 322104 CDS PICST_32146 150865551 4839107 802922..803818 1 NC_009045.1 class II aldolase and adducin N terminal domain; aldolase 803818 ALD1 4839107 ALD1 Pichia stipitis CBS 6054 aldolase XP_001384816.2 802922 D 322104 CDS PICST_83955 126137281 4839226 complement(803962..804798) 1 NC_009045.1 predicted protein 804798 4839226 PICST_83955 Pichia stipitis CBS 6054 predicted protein XP_001385164.1 803962 R 322104 CDS PICST_47506 150865552 4839108 805891..806772 1 NC_009045.1 predicted protein 806772 4839108 PICST_47506 Pichia stipitis CBS 6054 predicted protein XP_001384817.2 805891 D 322104 CDS PICST_59902 150865802 4839227 complement(806940..807665) 1 NC_009045.1 predicted protein 807665 4839227 PICST_59902 Pichia stipitis CBS 6054 predicted protein XP_001385165.2 806940 R 322104 CDS PICST_32150 126136589 4839109 808068..808559 1 NC_009045.1 some similarity to COMPASS component SDC1; possibly involved in chromatin remodeling member of Set1p complex; Set1C component SDC1 (Suppressor of CDC25 protein 1) 808559 SDC1 4839109 SDC1 Pichia stipitis CBS 6054 Set1C component SDC1 (Suppressor of CDC25 protein 1) XP_001384818.1 808068 D 322104 CDS PICST_89789 150865553 4839228 809069..810661 1 NC_009045.1 predicted protein 810661 4839228 PICST_89789 Pichia stipitis CBS 6054 predicted protein XP_001384819.2 809069 D 322104 CDS PICST_36305 126136593 4839229 811507..813030 1 NC_009045.1 predicted protein 813030 4839229 PICST_36305 Pichia stipitis CBS 6054 predicted protein XP_001384820.1 811507 D 322104 CDS PICST_83723 150865554 4839230 815182..816855 1 NC_009045.1 go_function: hydrolase activity; predicted protein 816855 4839230 PICST_83723 Pichia stipitis CBS 6054 predicted protein XP_001384821.2 815182 D 322104 CDS PICST_60429 150865555 4839420 817746..818315 1 NC_009045.1 predicted protein 818315 4839420 PICST_60429 Pichia stipitis CBS 6054 predicted protein XP_001384822.2 817746 D 322104 CDS PICST_32155 150865556 4839421 818472..819107 1 NC_009045.1 predicted protein 819107 4839421 PICST_32155 Pichia stipitis CBS 6054 predicted protein XP_001384823.2 818472 D 322104 CDS PICST_32156 150865557 4839422 819684..820166 1 NC_009045.1 predicted protein 820166 4839422 PICST_32156 Pichia stipitis CBS 6054 predicted protein XP_001384824.2 819684 D 322104 CDS PICST_61217 150865558 4839423 822330..822962 1 NC_009045.1 predicted protein 822962 4839423 PICST_61217 Pichia stipitis CBS 6054 predicted protein XP_001384825.2 822330 D 322104 CDS PICST_72696 126137285 4839424 complement(823368..823952) 1 NC_009045.1 inosine triphosphate pyrophosphatase, putative / HAM1 family protein 823952 HAM1 4839424 HAM1 Pichia stipitis CBS 6054 inosine triphosphate pyrophosphatase, putative / HAM1 family protein XP_001385166.1 823368 R 322104 CDS PICST_59866 150865803 4839110 complement(825167..826168) 1 NC_009045.1 go_function: thiamin diphosphokinase activity; ATP binding; go_process: thiamin diphosphate biosynthesis; Thiamine pyrophosphokinase (TPK) (Thiamine kinase) 826168 THI80 4839110 THI80 Pichia stipitis CBS 6054 Thiamine pyrophosphokinase (TPK) (Thiamine kinase) XP_001385167.2 825167 R 322104 CDS PICST_78571 150865559 4839111 join(826592..826775,826841..827178) 1 NC_009045.1 go_component: transcription factor TFIID complex; go_process: transcription initiation; predicted protein 827178 4839111 PICST_78571 Pichia stipitis CBS 6054 predicted protein XP_001384826.2 826592 D 322104 CDS PICST_46600 150865560 4839425 join(827763..829150,829310..>829832) 1 NC_009045.1 predicted protein 829150 4839425 PICST_46600 Pichia stipitis CBS 6054 predicted protein XP_001384827.2 827763 D 322104 CDS PICST_32162 150865561 4839426 830329..831207 1 NC_009045.1 predicted protein 831207 4839426 PICST_32162 Pichia stipitis CBS 6054 predicted protein XP_001384828.2 830329 D 322104 CDS PICST_36309 126137289 4839446 complement(832497..832892) 1 NC_009045.1 predicted protein 832892 4839446 PICST_36309 Pichia stipitis CBS 6054 predicted protein XP_001385168.1 832497 R 322104 CDS PICST_72675 126137291 4839112 complement(833968..834549) 1 NC_009045.1 guanylate kinase (GUK1) 834549 GUK1 4839112 GUK1 Pichia stipitis CBS 6054 guanylate kinase (GUK1) XP_001385169.1 833968 R 322104 CDS PICST_65774 150865562 4839113 836138..839023 1 NC_009045.1 go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; predicted protein 839023 4839113 PICST_65774 Pichia stipitis CBS 6054 predicted protein XP_001384829.2 836138 D 322104 CDS PICST_46903 126137293 4839447 complement(<842032..>842367) 1 NC_009045.1 predicted protein >842367 4839447 PICST_46903 Pichia stipitis CBS 6054 predicted protein XP_001385170.1 <842032 R 322104 CDS PICST_84044 150865804 4839114 complement(join(843358..846747,846790..846990)) 1 NC_009045.1 copper-transporting P-type ATPase with similarity to human Menkes and Wilsons genes; go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; metal ion binding; catalytic activity; go_process: metal ion transport; metabolism; copper-transporting ATPase (Cu(2+)-ATPase) 846990 CCC2.2 4839114 CCC2.2 Pichia stipitis CBS 6054 copper-transporting ATPase (Cu(2+)-ATPase) XP_001385171.2 843358 R 322104 CDS PICST_36313 150865805 4839115 complement(join(847882..849707,849774..849873)) 1 NC_009045.1 predicted protein 849873 4839115 PICST_36313 Pichia stipitis CBS 6054 predicted protein XP_001385172.2 847882 R 322104 CDS PICST_32169 150865563 4839116 850294..853455 1 NC_009045.1 predicted protein 853455 4839116 PICST_32169 Pichia stipitis CBS 6054 predicted protein XP_001384830.2 850294 D 322104 CDS PICST_47215 126137299 4839448 complement(853683..854240) 1 NC_009045.1 predicted protein 854240 4839448 PICST_47215 Pichia stipitis CBS 6054 predicted protein XP_001385173.1 853683 R 322104 CDS PICST_59792 126136615 4839117 856827..857786 1 NC_009045.1 go_function: disulfide oxidoreductase activity; go_process: electron transport; Thioredoxin reductase 857786 TRR1 4839117 TRR1 Pichia stipitis CBS 6054 Thioredoxin reductase XP_001384831.1 856827 D 322104 CDS PICST_36316 126136617 4839449 858103..858942 1 NC_009045.1 predicted protein 858942 4839449 PICST_36316 Pichia stipitis CBS 6054 predicted protein XP_001384832.1 858103 D 322104 CDS PICST_60492 150865806 4839450 complement(join(859077..859393,859427..859886,859923..860231)) 1 NC_009045.1 predicted protein 860231 4839450 PICST_60492 Pichia stipitis CBS 6054 predicted protein XP_001385174.2 859077 R 322104 CDS PICST_91583 150865564 4839697 860885..>861682 1 NC_009045.1 CYC2_YEAST Cytochrome c mitochondrial import factor CYC2; protein possibly processed from cytochrome c import factor >861682 CYC2 4839697 CYC2 Pichia stipitis CBS 6054 protein possibly processed from cytochrome c import factor XP_001384833.2 860885 D 322104 CDS PICST_83887 150865807 4839451 complement(join(862592..865386,865622..865631,865724..865900)) 1 NC_009045.1 Histone transcription regulator HIRA, WD repeat superfamily 865900 HIR2 4839451 HIR2 Pichia stipitis CBS 6054 Histone transcription regulator HIRA, WD repeat superfamily XP_001385175.2 862592 R 322104 CDS PICST_83851 150865565 4839698 866744..867505 1 NC_009045.1 go_component: protein kinase CK2 complex; go_function: protein kinase CK2 regulator activity; predicted protein 867505 4839698 PICST_83851 Pichia stipitis CBS 6054 predicted protein XP_001384834.2 866744 D 322104 CDS PICST_46284 150865566 4839452 867967..869106 1 NC_009045.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; mitochondrial tryptophanyl-tRNA synthetase 869106 MSW1 4839452 MSW1 Pichia stipitis CBS 6054 mitochondrial tryptophanyl-tRNA synthetase XP_001384835.2 867967 D 322104 CDS PICST_32179 150865567 4839453 join(874532..875119,875328..875390) 1 NC_009045.1 predicted protein 875390 4839453 PICST_32179 Pichia stipitis CBS 6054 predicted protein XP_001384836.2 874532 D 322104 CDS PICST_32180 126137305 4839454 complement(875498..877162) 1 NC_009045.1 go_component: membrane; go_process: transport; general amino acid permease 877162 GAP1.1 4839454 GAP1.1 Pichia stipitis CBS 6054 general amino acid permease XP_001385176.1 875498 R 322104 CDS PICST_32181 150865808 4839699 complement(877677..878504) 1 NC_009045.1 predicted protein 878504 4839699 PICST_32181 Pichia stipitis CBS 6054 predicted protein XP_001385177.2 877677 R 322104 CDS PICST_89976 150865809 4839700 complement(879461..880258) 1 NC_009045.1 putative phosphate epimerase similar to Methylthioribulose-1-phosphate dehydratase (MTRu-1-P dehydratase); conserved hypothetical protein 880258 MTN2 4839700 MTN2 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385178.2 879461 R 322104 CDS PICST_72691 150865568 4839701 880731..881333 1 NC_009045.1 go_function: molecular function unknown; Vacuolar protein sorting protein 46 (Charged multivesicular body protein 1) (DOA4-independent degradation protein 2) (Fifty two inhibitor 1) 881333 FTI1 4839701 FTI1 Pichia stipitis CBS 6054 Vacuolar protein sorting protein 46 (Charged multivesicular body protein 1) (DOA4-independent degradation protein 2) (Fifty two inhibitor 1) XP_001384837.2 880731 D 322104 CDS PICST_67855 150865810 4839455 complement(881688..886085) 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 886085 4839455 PICST_67855 Pichia stipitis CBS 6054 predicted protein XP_001385179.2 881688 R 322104 CDS PICST_32185 150865569 4839702 888395..889192 1 NC_009045.1 predicted protein 889192 4839702 PICST_32185 Pichia stipitis CBS 6054 predicted protein XP_001384838.2 888395 D 322104 CDS PICST_67856 126136631 4839231 889476..889934 1 NC_009045.1 nucleoside diphosphate kinase catalyzes the phosphorylation of nucleoside diphosphates into the corresponding triphosphates for nucleic acid biosynthesis; go_function: nucleoside-diphosphate kinase activity; ATP binding; go_process: GTP biosynthesis; UTP biosynthesis; CTP biosynthesis; nucleoside diphosphate kinase 889934 YNK1 4839231 YNK1 Pichia stipitis CBS 6054 nucleoside diphosphate kinase XP_001384839.1 889476 D 322104 CDS PICST_46492 150865570 4839232 join(891037..891367,891446..893103) 1 NC_009045.1 transcription factor, probable member of histone acetyltransferase SAGA complex 893103 SPT8 4839232 SPT8 Pichia stipitis CBS 6054 transcription factor, probable member of histone acetyltransferase SAGA complex XP_001384840.2 891037 D 322104 CDS PICST_46346 150865811 4839233 complement(join(893282..895196,895347..895501)) 1 NC_009045.1 predicted protein 895501 4839233 PICST_46346 Pichia stipitis CBS 6054 predicted protein XP_001385180.2 893282 R 322104 CDS PICST_46425 126136635 4839703 896761..897963 1 NC_009045.1 Trimethyllysine dioxygenase (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TMLH) (TML dioxygenase) (TMLD); go_function: oxidoreductase activity; Trimethyllysine dioxygenase (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) 897963 TML1 4839703 TML1 Pichia stipitis CBS 6054 Trimethyllysine dioxygenase (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) XP_001384841.1 896761 D 322104 CDS PICST_89614 126137315 4839234 complement(898513..899469) 1 NC_009045.1 NAD(P)H-dependent D-xylose reductase (XR) 899469 XYL1 4839234 XYL1 Pichia stipitis CBS 6054 NAD(P)H-dependent D-xylose reductase (XR) XP_001385181.1 898513 R 322104 CDS PICST_67859 150865812 4839704 complement(901624..903363) 1 NC_009045.1 transcription factor involved in glucose repression similar to DNA-binding protein creA (Carbon catabolite repressor); go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; transcription factor involved in glucose repression 903363 MIG1 4839704 MIG1 Pichia stipitis CBS 6054 transcription factor involved in glucose repression XP_001385182.2 901624 R 322104 CDS PICST_60634 150865813 4839705 complement(join(907546..907625,907644..909642,909682..909831)) 1 NC_009045.1 putative transcriptional activator with fungal binuclear cluster domain; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; STB4; binds Sin3p in two-hybrid assay 909831 STB4 4839705 STB4 Pichia stipitis CBS 6054 STB4; binds Sin3p in two-hybrid assay XP_001385183.2 907546 R 322104 CDS PICST_36326 150865814 4839583 complement(910736..911848) 1 NC_009045.1 sorbitol dehydrogenase (ADH) [BACTERIAL]; go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; sorbitol dehydrogenase 911848 SOR4 4839583 SOR4 Pichia stipitis CBS 6054 sorbitol dehydrogenase XP_001385184.2 910736 R 322104 CDS PICST_32194 150865815 4839584 complement(join(912203..913634,913686..914275)) 1 NC_009045.1 predicted protein 914275 4839584 PICST_32194 Pichia stipitis CBS 6054 predicted protein XP_001385185.2 912203 R 322104 CDS PICST_60868 150865816 4839585 complement(join(914571..914930,914958..>915449)) 1 NC_009045.1 predicted protein 914930 4839585 PICST_60868 Pichia stipitis CBS 6054 predicted protein XP_001385186.2 914571 R 322104 CDS PICST_72792 150865571 4839586 916321..917289 1 NC_009045.1 predicted protein 917289 4839586 PICST_72792 Pichia stipitis CBS 6054 predicted protein XP_001384842.2 916321 D 322104 CDS PICST_67862 150865572 4839235 919051..921765 1 NC_009045.1 hypothetical protein 921765 4839235 PICST_67862 Pichia stipitis CBS 6054 hypothetical protein XP_001384843.2 919051 D 322104 CDS PICST_47023 150865573 4839236 join(922570..922904,923055..924465) 1 NC_009045.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 924465 4839236 PICST_47023 Pichia stipitis CBS 6054 predicted protein XP_001384844.2 922570 D 322104 CDS PICST_32199 150865574 4839237 925298..928618 1 NC_009045.1 go_component: intracellular; predicted protein 928618 4839237 PICST_32199 Pichia stipitis CBS 6054 predicted protein XP_001384845.2 925298 D 322104 CDS PICST_84147 150865817 4839238 complement(join(928748..930007,930146..930268)) 1 NC_009045.1 go_function: proline dehydrogenase activity; go_process: glutamate biosynthesis; proline catabolism; proline oxidase 930268 PUT1 4839238 PUT1 Pichia stipitis CBS 6054 proline oxidase XP_001385187.2 928748 R 322104 CDS PICST_32201 150865575 4839587 931295..933544 1 NC_009045.1 predicted protein 933544 4839587 PICST_32201 Pichia stipitis CBS 6054 predicted protein XP_001384846.2 931295 D 322104 CDS PICST_32202 150865576 4839239 934992..936659 1 NC_009045.1 predicted protein 936659 4839239 PICST_32202 Pichia stipitis CBS 6054 predicted protein XP_001384847.2 934992 D 322104 CDS PICST_83827 150865577 4839240 937173..939542 1 NC_009045.1 predicted protein 939542 4839240 PICST_83827 Pichia stipitis CBS 6054 predicted protein XP_001384848.2 937173 D 322104 CDS PICST_47429 126136651 4839289 join(<939795..939996,940058..940271,940329..940812) 1 NC_009045.1 go_function: GTP binding; go_process: cell cycle; predicted protein 940812 4839289 PICST_47429 Pichia stipitis CBS 6054 predicted protein XP_001384849.1 <939795 D 322104 CDS PICST_32205 150865578 4839290 941185..942057 1 NC_009045.1 hypothetical protein 942057 4839290 PICST_32205 Pichia stipitis CBS 6054 hypothetical protein XP_001384850.2 941185 D 322104 CDS PICST_61206 150865818 4839291 complement(942173..943633) 1 NC_009045.1 go_function: nucleotidyltransferase activity; go_process: metabolism; UDP-N-acetylglucosamine pyrophosphorylase 943633 UAP1 4839291 UAP1 Pichia stipitis CBS 6054 UDP-N-acetylglucosamine pyrophosphorylase XP_001385188.2 942173 R 322104 CDS PICST_72552 126137331 4839588 complement(944978..946231) 1 NC_009045.1 hypothetical protoplast-secreted beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain similar to Extracellular matrix protein 33 precursor; hypothetical protoplast-secreted beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain (ECM33) 946231 PST1 4839588 PST1 Pichia stipitis CBS 6054 hypothetical protoplast-secreted beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain (ECM33) XP_001385189.1 944978 R 322104 CDS PICST_60344 126136655 4839589 948895..949860 1 NC_009045.1 go_component: membrane; go_function: binding; go_process: transport; mitochondrial succinate-fumarate transporter 949860 SFC1 4839589 SFC1 Pichia stipitis CBS 6054 mitochondrial succinate-fumarate transporter XP_001384851.1 948895 D 322104 CDS PICST_67866 126137333 4839292 complement(950473..951870) 1 NC_009045.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; asparagine-rich zinc finger protein 951870 AZF2 4839292 AZF2 Pichia stipitis CBS 6054 asparagine-rich zinc finger protein XP_001385190.1 950473 R 322104 CDS PICST_32210 150865579 4839590 952463..953518 1 NC_009045.1 phospholipid scramblase 1 953518 PLS1 4839590 PLS1 Pichia stipitis CBS 6054 phospholipid scramblase 1 XP_001384852.2 952463 D 322104 CDS PICST_65784 150865819 4839293 complement(join(953672..954592,954938..954976)) 1 NC_009045.1 go_component: intracellular; go_function: ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 954976 4839293 PICST_65784 Pichia stipitis CBS 6054 predicted protein XP_001385191.2 953672 R 322104 CDS PICST_32212 126136659 4839591 955304..956023 1 NC_009045.1 go_function: hydrolase activity; predicted protein 956023 4839591 PICST_32212 Pichia stipitis CBS 6054 predicted protein XP_001384853.1 955304 D 322104 CDS PICST_32213 150865580 4839294 957577..958509 1 NC_009045.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 958509 4839294 PICST_32213 Pichia stipitis CBS 6054 predicted protein XP_001384854.2 957577 D 322104 CDS PICST_60284 150865820 4839295 complement(958694..959530) 1 NC_009045.1 dihydrofolate reductase 959530 FSH3 4839295 FSH3 Pichia stipitis CBS 6054 dihydrofolate reductase XP_001385192.2 958694 R 322104 CDS PICST_84214 150865821 4839592 complement(959933..960796) 1 NC_009045.1 suppressor of deletion of TFIIS 960796 SDT1 4839592 SDT1 Pichia stipitis CBS 6054 suppressor of deletion of TFIIS XP_001385193.2 959933 R 322104 CDS PICST_32216 150865822 4839317 complement(961258..963015) 1 NC_009045.1 predicted protein 963015 4839317 PICST_32216 Pichia stipitis CBS 6054 predicted protein XP_001385194.2 961258 R 322104 CDS PICST_60162 150865823 4839318 complement(963404..964294) 1 NC_009045.1 predicted protein 964294 4839318 PICST_60162 Pichia stipitis CBS 6054 predicted protein XP_001385195.2 963404 R 322104 CDS PICST_32218 150865824 4839319 complement(966002..966490) 1 NC_009045.1 predicted protein 966490 4839319 PICST_32218 Pichia stipitis CBS 6054 predicted protein XP_001385196.2 966002 R 322104 CDS PICST_78364 126137347 4839320 complement(join(967268..968211,968485..968494)) 1 NC_009045.1 go_function: catalytic activity; arginase 968494 CAR1 4839320 CAR1 Pichia stipitis CBS 6054 arginase XP_001385197.1 967268 R 322104 CDS PICST_84114 150865581 4839321 join(970703..971422,971501..973710,973762..974473) 1 NC_009045.1 go_function: glycerophosphodiester phosphodiesterase activity; go_process: glycerol metabolism; hypothetical protein 974473 4839321 PICST_84114 Pichia stipitis CBS 6054 hypothetical protein XP_001384855.2 970703 D 322104 CDS PICST_60807 150865582 4839296 join(974903..975003,975070..975189,975322..976321) 1 NC_009045.1 predicted protein 976321 4839296 PICST_60807 Pichia stipitis CBS 6054 predicted protein XP_001384856.2 974903 D 322104 CDS PICST_60889 126136667 4839297 976601..977386 1 NC_009045.1 go_function: superoxide dismutase activity; metal ion binding; go_process: superoxide metabolism; Manganese superoxide dismutase 977386 SOD4.1 4839297 SOD4.1 Pichia stipitis CBS 6054 Manganese superoxide dismutase XP_001384857.1 976601 D 322104 CDS PICST_32223 150865825 4839172 complement(977632..978636) 1 NC_009045.1 predicted protein 978636 4839172 PICST_32223 Pichia stipitis CBS 6054 predicted protein XP_001385198.2 977632 R 322104 CDS PICST_32224 150865583 4839322 978911..979822 1 NC_009045.1 predicted protein 979822 4839322 PICST_32224 Pichia stipitis CBS 6054 predicted protein XP_001384858.2 978911 D 322104 CDS PICST_78143 126137351 4839173 complement(982171..983892) 1 NC_009045.1 go_function: catalytic activity; CTP synthase activity; go_process: pyrimidine nucleotide biosynthesis; CTP synthase 983892 URA7 4839173 URA7 Pichia stipitis CBS 6054 CTP synthase XP_001385199.1 982171 R 322104 CDS PICST_60984 126137353 4839323 complement(985183..985773) 1 NC_009045.1 predicted protein 985773 4839323 PICST_60984 Pichia stipitis CBS 6054 predicted protein XP_001385200.1 985183 R 322104 CDS PICST_60156 126137355 4839324 complement(986055..>986330) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein >986330 4839324 PICST_60156 Pichia stipitis CBS 6054 predicted protein XP_001385201.1 986055 R 322104 CDS PICST_83849 150865826 4839325 complement(join(987912..988067,988107..990128)) 1 NC_009045.1 protein required for glucose repression and for glucose and cation transport 990128 GRR1 4839325 GRR1 Pichia stipitis CBS 6054 protein required for glucose repression and for glucose and cation transport XP_001385202.2 987912 R 322104 CDS PICST_61010 150865584 4839326 991411..992748 1 NC_009045.1 predicted protein 992748 4839326 PICST_61010 Pichia stipitis CBS 6054 predicted protein XP_001384859.2 991411 D 322104 CDS PICST_77995 150865585 4839174 join(994545..994767,994876..995243,995259..997832,997890..998108) 1 NC_009045.1 go_function: RNA binding; predicted protein 998108 4839174 PICST_77995 Pichia stipitis CBS 6054 predicted protein XP_001384860.2 994545 D 322104 CDS PICST_32230 150865586 4839175 join(998997..1000163,1000219..1000353) 1 NC_009045.1 predicted protein 1000353 4839175 PICST_32230 Pichia stipitis CBS 6054 predicted protein XP_001384861.2 998997 D 322104 CDS PICST_72556 126136677 4839176 1000901..1002106 1 NC_009045.1 go_function: translation initiation factor activity; go_process: translational initiation; regulation of translational initiation; predicted protein 1002106 4839176 PICST_72556 Pichia stipitis CBS 6054 predicted protein XP_001384862.1 1000901 D 322104 CDS PICST_32232 150865827 4839177 complement(1002366..1003217) 1 NC_009045.1 component of a pre-mRNA polyadenylation factor 1003217 FIP1 4839177 FIP1 Pichia stipitis CBS 6054 component of a pre-mRNA polyadenylation factor XP_001385203.2 1002366 R 322104 CDS PICST_47208 150865828 4839327 complement(1003437..>1008359) 1 NC_009045.1 Integrin alpha chain-like protein (Alpha-INT1) >1008359 INT1 4839327 INT1 Pichia stipitis CBS 6054 Integrin alpha chain-like protein (Alpha-INT1) XP_001385204.2 1003437 R 322104 CDS PICST_78234 126136679 4839374 1010397..1011842 1 NC_009045.1 go_function: metallopeptidase activity; go_process: proteolysis and peptidolysis; Glutamate carboxypeptidase-like protein 1011842 CPGL 4839374 CPGL Pichia stipitis CBS 6054 Glutamate carboxypeptidase-like protein XP_001384863.1 1010397 D 322104 CDS PICST_89581 150865587 4839178 1012890..1014248 1 NC_009045.1 Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins (CDC332); go_component: cytoplasm; go_function: RNA binding; translation initiation factor activity; go_process: translational initiation; Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins 1014248 CDC33 4839178 CDC33 Pichia stipitis CBS 6054 Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins XP_001384864.2 1012890 D 322104 CDS PICST_89450 126136683 4839179 1016065..1018227 1 NC_009045.1 go_function: catalytic activity; go_process: metabolism; long-chain-fatty-acid CoA ligase 1018227 FAA22 4839179 FAA22 Pichia stipitis CBS 6054 long-chain-fatty-acid CoA ligase XP_001384865.1 1016065 D 322104 CDS PICST_89565 150865829 4839180 complement(1018411..1019982) 1 NC_009045.1 go_process: electron transport; mitochondrial D-lactate dehydrogenase 1019982 DLD2 4839180 DLD2 Pichia stipitis CBS 6054 mitochondrial D-lactate dehydrogenase XP_001385205.2 1018411 R 322104 CDS PICST_32238 150865588 4839375 1021573..1023081 1 NC_009045.1 go_function: carboxypeptidase A activity; go_process: proteolysis and peptidolysis; predicted protein 1023081 4839375 PICST_32238 Pichia stipitis CBS 6054 predicted protein XP_001384866.2 1021573 D 322104 CDS PICST_60559 126136687 4839241 1023504..1023917 1 NC_009045.1 go_component: cytoplasm; go_function: hydrolase activity, acting on ester bonds; go_process: D-amino acid catabolism; predicted protein 1023917 4839241 PICST_60559 Pichia stipitis CBS 6054 predicted protein XP_001384867.1 1023504 D 322104 CDS PICST_32240 126137365 4839242 complement(1024094..1025572) 1 NC_009045.1 go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; predicted protein 1025572 4839242 PICST_32240 Pichia stipitis CBS 6054 predicted protein XP_001385206.1 1024094 R 322104 CDS PICST_32241 150865589 4839376 1027823..1029043 1 NC_009045.1 predicted protein 1029043 4839376 PICST_32241 Pichia stipitis CBS 6054 predicted protein XP_001384868.2 1027823 D 322104 CDS PICST_32242 150865590 4839243 1029351..1030040 1 NC_009045.1 predicted protein 1030040 4839243 PICST_32242 Pichia stipitis CBS 6054 predicted protein XP_001384869.2 1029351 D 322104 CDS PICST_47260 150865591 4839244 1030455..1030835 1 NC_009045.1 predicted protein 1030835 4839244 PICST_47260 Pichia stipitis CBS 6054 predicted protein XP_001384870.2 1030455 D 322104 CDS PICST_72822 126137367 4839245 complement(1032276..1032851) 1 NC_009045.1 NADH-ubiquinone oxidoreductase subunit 1032851 NUO21.3 4839245 NUO21.3 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase subunit XP_001385207.1 1032276 R 322104 CDS PICST_47518 150865592 4839377 1033974..1034990 1 NC_009045.1 predicted protein 1034990 4839377 PICST_47518 Pichia stipitis CBS 6054 predicted protein XP_001384871.2 1033974 D 322104 CDS PICST_84005 126137369 4839246 complement(1035250..1036362) 1 NC_009045.1 go_function: catalytic activity; go_process: metabolism; branched-chain amino acid transaminase 1036362 BAT2 4839246 BAT2 Pichia stipitis CBS 6054 branched-chain amino acid transaminase XP_001385208.1 1035250 R 322104 CDS PICST_72662 150865593 4839378 join(1037756..1037764,1038286..1039026) 1 NC_009045.1 go_component: nucleus; go_process: regulation of transcription, DNA-dependent; predicted protein 1039026 4839378 PICST_72662 Pichia stipitis CBS 6054 predicted protein XP_001384872.2 1037756 D 322104 CDS PICST_60945 150865830 4839247 complement(join(1039445..1040190,1040242..1040695)) 1 NC_009045.1 predicted protein 1040695 4839247 PICST_60945 Pichia stipitis CBS 6054 predicted protein XP_001385209.2 1039445 R 322104 CDS PICST_47348 150865831 4839379 complement(join(<1042268..1043976,1044262..>1044472)) 1 NC_009045.1 go_component: nucleus; go_function: DNA binding; predicted protein 1043976 4839379 PICST_47348 Pichia stipitis CBS 6054 predicted protein XP_001385210.2 <1042268 R 322104 CDS PICST_46781 126136699 4839380 1045712..1047124 1 NC_009045.1 go_function: transaminase activity; 4-aminobutyrate aminotransferase (GABA transaminase) 1047124 UGA1.2 4839380 UGA1.2 Pichia stipitis CBS 6054 4-aminobutyrate aminotransferase (GABA transaminase) XP_001384873.1 1045712 D 322104 CDS PICST_32251 150865594 4839248 1047369..1048757 1 NC_009045.1 predicted protein 1048757 4839248 PICST_32251 Pichia stipitis CBS 6054 predicted protein XP_001384874.2 1047369 D 322104 CDS PICST_46484 150865832 4839249 complement(1048888..1050549) 1 NC_009045.1 predicted protein 1050549 4839249 PICST_46484 Pichia stipitis CBS 6054 predicted protein XP_001385211.2 1048888 R 322104 CDS PICST_46510 126137377 4839381 complement(1051607..>1052083) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein >1052083 4839381 PICST_46510 Pichia stipitis CBS 6054 predicted protein XP_001385212.1 1051607 R 322104 CDS PICST_32254 150865595 4839382 1053043..1054539 1 NC_009045.1 go_function: carboxylic ester hydrolase activity; go_process: lipid metabolism; predicted protein 1054539 4839382 PICST_32254 Pichia stipitis CBS 6054 predicted protein XP_001384875.2 1053043 D 322104 CDS PICST_60105 150865596 4839250 1055525..1056571 1 NC_009045.1 uridine nucleosidase (uridine ribohydrolase) 1056571 URH1 4839250 URH1 Pichia stipitis CBS 6054 uridine nucleosidase (uridine ribohydrolase) XP_001384876.2 1055525 D 322104 CDS PICST_89865 126137379 4839651 complement(1056961..1057695) 1 NC_009045.1 go_function: catalytic activity; go_process: metabolism; phosphoglycerate mutase 1057695 GPM2 4839651 GPM2 Pichia stipitis CBS 6054 phosphoglycerate mutase XP_001385213.1 1056961 R 322104 CDS PICST_32257 150865597 4839706 1058032..1058370 1 NC_009045.1 predicted protein 1058370 4839706 PICST_32257 Pichia stipitis CBS 6054 predicted protein XP_001384877.2 1058032 D 322104 CDS PICST_32258 150865598 4839652 1059298..1060572 1 NC_009045.1 go_component: membrane; predicted protein 1060572 4839652 PICST_32258 Pichia stipitis CBS 6054 predicted protein XP_001384878.2 1059298 D 322104 CDS PICST_84291 150865833 4839653 complement(join(1060730..1061044,1061069..1061794)) 1 NC_009045.1 predicted protein 1061794 4839653 PICST_84291 Pichia stipitis CBS 6054 predicted protein XP_001385214.2 1060730 R 322104 CDS PICST_32260 150865599 4839707 1063097..1064620 1 NC_009045.1 flavin-containing monooxygenase 1064620 FMO2 4839707 FMO2 Pichia stipitis CBS 6054 flavin-containing monooxygenase XP_001384879.2 1063097 D 322104 CDS PICST_60620 150865600 4839654 1065176..1067119 1 NC_009045.1 predicted protein 1067119 4839654 PICST_60620 Pichia stipitis CBS 6054 predicted protein XP_001384880.2 1065176 D 322104 CDS PICST_60950 150865601 4839655 join(1067509..1067808,1067845..1068942) 1 NC_009045.1 go_component: clathrin vesicle coat; go_process: intracellular protein transport; predicted protein 1068942 4839655 PICST_60950 Pichia stipitis CBS 6054 predicted protein XP_001384881.2 1067509 D 322104 CDS PICST_78248 150865602 4839656 1069270..1070625 1 NC_009045.1 go_process: nucleoside metabolism; phosphoribosylpyrophosphate synthetase 1070625 PRS5 4839656 PRS5 Pichia stipitis CBS 6054 phosphoribosylpyrophosphate synthetase XP_001384882.2 1069270 D 322104 CDS PICST_32264 150865603 4839657 1072196..1073062 1 NC_009045.1 predicted protein 1073062 4839657 PICST_32264 Pichia stipitis CBS 6054 predicted protein XP_001384883.2 1072196 D 322104 CDS PICST_32265 150865834 4839658 complement(join(1074200..1074364,1074409..1074738,1075139..1075146,1075170..1075299)) 1 NC_009045.1 predicted protein 1075299 4839658 PICST_32265 Pichia stipitis CBS 6054 predicted protein XP_001385215.2 1074200 R 322104 CDS PICST_32266 150865604 4839708 1075532..1077700 1 NC_009045.1 predicted protein 1077700 4839708 PICST_32266 Pichia stipitis CBS 6054 predicted protein XP_001384884.2 1075532 D 322104 CDS PICST_78004 126136723 4839659 1080467..1083634 1 NC_009045.1 go_function: oxidoreductase activity; go_process: amino acid metabolism; NAD-specific glutamate dehydrogenase 1083634 GDH2 4839659 GDH2 Pichia stipitis CBS 6054 NAD-specific glutamate dehydrogenase XP_001384885.1 1080467 D 322104 CDS PICST_60505 150865605 4839660 join(1084282..1084433,1084464..1085358) 1 NC_009045.1 predicted protein 1085358 4839660 PICST_60505 Pichia stipitis CBS 6054 predicted protein XP_001384886.2 1084282 D 322104 CDS PICST_67887 150865835 4839532 complement(1085541..1087928) 1 NC_009045.1 predicted protein 1087928 4839532 PICST_67887 Pichia stipitis CBS 6054 predicted protein XP_001385216.2 1085541 R 322104 CDS PICST_36364 150865836 4839709 complement(1088373..1089860) 1 NC_009045.1 ER protein that transfers Glc-Nac-P from UDP-GlcNac to Dol-P; go_component: membrane; go_function: catalytic activity; go_process: lipid metabolism; tunicamycin resistance protein 1089860 ALG7 4839709 ALG7 Pichia stipitis CBS 6054 tunicamycin resistance protein XP_001385217.2 1088373 R 322104 CDS PICST_60243 150865606 4839710 1090780..1091850 1 NC_009045.1 predicted protein 1091850 4839710 PICST_60243 Pichia stipitis CBS 6054 predicted protein XP_001384887.2 1090780 D 322104 CDS PICST_36366 150865837 4839533 complement(1091963..1093255) 1 NC_009045.1 predicted protein 1093255 4839533 PICST_36366 Pichia stipitis CBS 6054 predicted protein XP_001385218.2 1091963 R 322104 CDS PICST_60941 150865838 4839711 complement(join(1096516..1097335,1097532..1097629)) 1 NC_009045.1 mitochondrial thiamine pyrophosphate transporter Tpc1p is a transporter that catalyzes the uptake of the essential cofactor thiamine pyrophosphate (ThPP) into mitochondria it is located in the mitochondrial membrane and its expression appears to be regulated by carbon source; go_component: membrane; go_function: binding; go_process: transport; mitochondrial thiamine pyrophosphate transporter 1097629 TPC1 4839711 TPC1 Pichia stipitis CBS 6054 mitochondrial thiamine pyrophosphate transporter XP_001385219.2 1096516 R 322104 CDS PICST_32275 150865607 4839712 1098269..1099327 1 NC_009045.1 predicted protein 1099327 4839712 PICST_32275 Pichia stipitis CBS 6054 predicted protein XP_001384888.2 1098269 D 322104 CDS PICST_60393 150865839 4839534 complement(join(1099474..1100913,1100926..1103115)) 1 NC_009045.1 S. cerevisiae homolog is necessary for sensitivity to a killer toxin (SMK toxin) produced by Pichia Farinosa; go_function: catalytic activity; go_process: metabolism; P-type ATPase 1103115 SPF1 4839534 SPF1 Pichia stipitis CBS 6054 P-type ATPase XP_001385220.2 1099474 R 322104 CDS PICST_32277 150865840 4839713 complement(1104173..1104943) 1 NC_009045.1 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase); go_function: oxidoreductase activity; go_process: metabolism; short chain dehydrogenase 1104943 FAB7 4839713 FAB7 Pichia stipitis CBS 6054 short chain dehydrogenase XP_001385221.2 1104173 R 322104 CDS PICST_32278 150865841 4839714 complement(1108581..1109348) 1 NC_009045.1 putative short chain dehydrogenase Glucose/ribitol dehydrogenase; go_function: oxidoreductase activity; go_process: metabolism; putative short chain dehydrogenase 1109348 YKH1.1 4839714 YKH1.1 Pichia stipitis CBS 6054 putative short chain dehydrogenase XP_001385222.2 1108581 R 322104 CDS PICST_47021 150865842 4839067 complement(1110605..1112134) 1 NC_009045.1 predicted protein 1112134 4839067 PICST_47021 Pichia stipitis CBS 6054 predicted protein XP_001385223.2 1110605 R 322104 CDS PICST_32280 150865608 4839068 1114477..1115598 1 NC_009045.1 Naringenin 3-dioxygenase 1115598 NGD3 4839068 NGD3 Pichia stipitis CBS 6054 Naringenin 3-dioxygenase XP_001384889.2 1114477 D 322104 CDS PICST_72245 126137401 4839535 complement(1117285..1120440) 1 NC_009045.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; valyl-tRNA synthetase 1120440 VAS1 4839535 VAS1 Pichia stipitis CBS 6054 valyl-tRNA synthetase XP_001385224.1 1117285 R 322104 CDS PICST_46989 150865843 4839069 complement(join(1120984..1122511,1122575..1122681)) 1 NC_009045.1 required for vegetative and meiotic growth; splicing factor 1122681 PRP31 4839069 PRP31 Pichia stipitis CBS 6054 splicing factor XP_001385225.2 1120984 R 322104 CDS PICST_32283 126136733 4839070 1122894..1123574 1 NC_009045.1 go_function: 3'-5'-exoribonuclease activity; RNA binding; go_process: RNA processing; Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein 46) 1123574 RRP46 4839070 RRP46 Pichia stipitis CBS 6054 Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein 46) XP_001384890.1 1122894 D 322104 CDS PICST_83958 150865844 4839536 complement(1123864..1125720) 1 NC_009045.1 required for late nuclear division. Cdc15 promotes the exit from mitosis by directly switching on the kinase activity of Dbf2; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; protein kinase 1125720 DBF2 4839536 DBF2 Pichia stipitis CBS 6054 protein kinase XP_001385226.2 1123864 R 322104 CDS PICST_32285 150865845 4839071 complement(join(1127183..1127281,1127723..1127846,1128171..1128322)) 1 NC_009045.1 hypothetical protein 1128322 4839071 PICST_32285 Pichia stipitis CBS 6054 hypothetical protein XP_001385227.2 1127183 R 322104 CDS PICST_83722 126136735 4839072 1129105..1129929 1 NC_009045.1 member of the TC 9.B.33 YaaH family of putative transporters; go_component: membrane; go_function: molecular function unknown; Accumulation of DYads 1129929 ADY2 4839072 ADY2 Pichia stipitis CBS 6054 Accumulation of DYads XP_001384891.1 1129105 D 322104 CDS PICST_32287 150865846 4839537 complement(join(1131581..1131640,1131959..1132504)) 1 NC_009045.1 predicted protein 1132504 4839537 PICST_32287 Pichia stipitis CBS 6054 predicted protein XP_001385228.2 1131581 R 322104 CDS PICST_83878 126136737 4839073 1134651..1136642 1 NC_009045.1 go_function: copper ion binding; copper-containing amine oxidase 1136642 AMO2 4839073 AMO2 Pichia stipitis CBS 6054 copper-containing amine oxidase XP_001384892.1 1134651 D 322104 CDS PICST_84262 150865847 4839538 complement(join(1137014..1137261,1137304..1138264,1138301..1139182,1139258..1139994,1140016..1140379,1140413..1140518,1140591..1141000)) 1 NC_009045.1 GDP/GTP exchange factor Gdp/GTP exchange factor required for growth at low temperatures; go_function: guanyl-nucleotide exchange factor activity; go_process: intracellular signaling cascade; GDP/GTP exchange factor 1141000 LTE1 4839538 LTE1 Pichia stipitis CBS 6054 GDP/GTP exchange factor XP_001385229.2 1137014 R 322104 CDS PICST_32290 150865848 4839074 complement(join(1143403..1143984,1144045..1144047)) 1 NC_009045.1 predicted protein 1144047 4839074 PICST_32290 Pichia stipitis CBS 6054 predicted protein XP_001385230.2 1143403 R 322104 CDS PICST_67893 150865609 4839400 1145095..1148889 1 NC_009045.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcriptional regulator of the forkhead/HNF3 family 1148889 FHL1 4839400 FHL1 Pichia stipitis CBS 6054 transcriptional regulator of the forkhead/HNF3 family XP_001384893.2 1145095 D 322104 CDS PICST_36375 126136741 4839539 1149547..1150395 1 NC_009045.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1150395 4839539 PICST_36375 Pichia stipitis CBS 6054 predicted protein XP_001384894.1 1149547 D 322104 CDS PICST_72706 126136743 4839540 join(1151029..1151031,1151524..1152045) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1152045 4839540 PICST_72706 Pichia stipitis CBS 6054 predicted protein XP_001384895.1 1151029 D 322104 CDS PICST_32294 126136745 4839551 1154505..1155284 1 NC_009045.1 predicted protein 1155284 4839551 PICST_32294 Pichia stipitis CBS 6054 predicted protein XP_001384896.1 1154505 D 322104 CDS PICST_32295 150865849 4839552 complement(1155643..1156005) 1 NC_009045.1 go_function: molecular function unknown; predicted protein 1156005 4839552 PICST_32295 Pichia stipitis CBS 6054 predicted protein XP_001385231.2 1155643 R 322104 CDS PICST_60919 150865610 4839401 join(1156638..1156958,1156989..1157874,1157917..1158374) 1 NC_009045.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1158374 4839401 PICST_60919 Pichia stipitis CBS 6054 predicted protein XP_001384897.2 1156638 D 322104 CDS PICST_72784 150865850 4839553 complement(1158484..1159599) 1 NC_009045.1 a member of a conserved family of actin monomer sequestering proteins. TWF1 is comprised almost entirely of two tandem repeats, each having sequence homology with cofilin (COF1); go_component: intracellular; go_function: actin binding; Twinfilin A 1159599 TWF1 4839553 TWF1 Pichia stipitis CBS 6054 Twinfilin A XP_001385232.2 1158484 R 322104 CDS PICST_60357 126136749 4839402 join(1160132..1161004,1161038..1161409) 1 NC_009045.1 predicted protein 1161409 4839402 PICST_60357 Pichia stipitis CBS 6054 predicted protein XP_001384898.1 1160132 D 322104 CDS PICST_72817 126136751 4839554 1161623..1162279 1 NC_009045.1 predicted protein 1162279 4839554 PICST_72817 Pichia stipitis CBS 6054 predicted protein XP_001384899.1 1161623 D 322104 CDS PICST_32299 150865851 4839555 complement(1162551..1164737) 1 NC_009045.1 predicted protein 1164737 4839555 PICST_32299 Pichia stipitis CBS 6054 predicted protein XP_001385233.2 1162551 R 322104 CDS PICST_84089 126137421 4839403 complement(1166684..1167613) 1 NC_009045.1 predicted protein 1167613 4839403 PICST_84089 Pichia stipitis CBS 6054 predicted protein XP_001385234.1 1166684 R 322104 CDS PICST_72814 126136753 4839404 1169768..1170502 1 NC_009045.1 go_component: peroxisomal membrane; integral to membrane; predicted protein 1170502 4839404 PICST_72814 Pichia stipitis CBS 6054 predicted protein XP_001384900.1 1169768 D 322104 CDS PICST_47064 150865611 4839556 1170893..1171489 1 NC_009045.1 go_component: peroxisomal membrane; integral to membrane; predicted protein 1171489 4839556 PICST_47064 Pichia stipitis CBS 6054 predicted protein XP_001384901.2 1170893 D 322104 CDS PICST_84038 150865612 4839557 1172881..1175298 1 NC_009045.1 go_component: protein phosphatase type 2A complex; go_function: protein phosphatase type 2A regulator activity; go_process: signal transduction; predicted protein 1175298 4839557 PICST_84038 Pichia stipitis CBS 6054 predicted protein XP_001384902.2 1172881 D 322104 CDS PICST_65804 126136759 4839558 join(1177168..1177627,1177841..1178955) 1 NC_009045.1 go_function: catalytic activity; predicted protein 1178955 4839558 PICST_65804 Pichia stipitis CBS 6054 predicted protein XP_001384903.1 1177168 D 322104 CDS PICST_61112 150865613 4839559 join(1179336..1179531,1179553..1179926) 1 NC_009045.1 predicted protein 1179926 4839559 PICST_61112 Pichia stipitis CBS 6054 predicted protein XP_001384904.2 1179336 D 322104 CDS PICST_6806 126136763 4839298 1180344..>1181252 1 NC_009045.1 predicted protein >1181252 4839298 PICST_6806 Pichia stipitis CBS 6054 predicted protein XP_001384905.1 1180344 D 322104 CDS PICST_67900 150865614 4839299 1183933..1185456 1 NC_009045.1 translocates LCBs from the cytoplasmic side toward the extracytoplasmic side of the membrane; go_component: integral to membrane; go_process: response to xenobiotic stimulus; putative transporter or flippase 1185456 RTA1 4839299 RTA1 Pichia stipitis CBS 6054 putative transporter or flippase XP_001384906.2 1183933 D 322104 CDS PICST_61012 150865615 4839300 1186403..1187761 1 NC_009045.1 go_component: integral to membrane; go_process: response to xenobiotic stimulus; putative transporter or flippase transmembrane protein 1187761 RTA3 4839300 RTA3 Pichia stipitis CBS 6054 putative transporter or flippase transmembrane protein XP_001384907.2 1186403 D 322104 CDS PICST_46345 150865616 4839301 <1188147..1189739 1 NC_009045.1 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) 1189739 HPD1 4839301 HPD1 Pichia stipitis CBS 6054 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) XP_001384908.2 <1188147 D 322104 CDS PICST_32309 150865852 4839302 complement(1189919..1191076) 1 NC_009045.1 basic helix-loop-helix transcription factor Enhanced filamentous growth protein; go_function: DNA binding; transcription factor activity; go_process: regulation of transcription, DNA-dependent; basic helix-loop-helix transcription factor 1191076 EFH1 4839302 EFH1 Pichia stipitis CBS 6054 basic helix-loop-helix transcription factor XP_001385235.2 1189919 R 322104 CDS PICST_60861 150865617 4839405 1193659..1195293 1 NC_009045.1 go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; predicted protein 1195293 4839405 PICST_60861 Pichia stipitis CBS 6054 predicted protein XP_001384909.2 1193659 D 322104 CDS PICST_67901 150865853 4839303 complement(1195686..1199459) 1 NC_009045.1 predicted protein 1199459 4839303 PICST_67901 Pichia stipitis CBS 6054 predicted protein XP_001385236.2 1195686 R 322104 CDS PICST_84260 126136773 4839406 1204249..1204893 1 NC_009045.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 1204893 4839406 PICST_84260 Pichia stipitis CBS 6054 predicted protein XP_001384910.1 1204249 D 322104 CDS PICST_32313 126137427 4839304 complement(1205253..1205687) 1 NC_009045.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 1205687 4839304 PICST_32313 Pichia stipitis CBS 6054 predicted protein XP_001385237.1 1205253 R 322104 CDS PICST_32314 126136775 4839407 join(1206111..1206128,1206592..1206897) 1 NC_009045.1 F1F0-ATPase complex, subunit h 1206897 ATP14 4839407 ATP14 Pichia stipitis CBS 6054 F1F0-ATPase complex, subunit h XP_001384911.1 1206111 D 322104 CDS PICST_32315 150865618 4839305 1207335..1208582 1 NC_009045.1 predicted protein 1208582 4839305 PICST_32315 Pichia stipitis CBS 6054 predicted protein XP_001384912.2 1207335 D 322104 CDS PICST_32316 150865854 4839306 complement(<1208687..1209850) 1 NC_009045.1 predicted protein 1209850 4839306 PICST_32316 Pichia stipitis CBS 6054 predicted protein XP_001385238.2 <1208687 R 322104 CDS PICST_60261 150865855 4839408 complement(1210158..>1210628) 1 NC_009045.1 go_function: translation release factor activity; go_process: translational termination; predicted protein >1210628 4839408 PICST_60261 Pichia stipitis CBS 6054 predicted protein XP_001385239.2 1210158 R 322104 CDS PICST_59868 150865619 4839409 1211483..1213672 1 NC_009045.1 DNA replication licensing factor, MCM5 component part of ARS replication initiation complex (CDC46); go_function: DNA binding; ATP binding; DNA-dependent ATPase activity; go_process: DNA replication initiation; DNA replication licensing factor, MCM5 component 1213672 MCM5 4839409 MCM5 Pichia stipitis CBS 6054 DNA replication licensing factor, MCM5 component XP_001384913.2 1211483 D 322104 CDS PICST_60825 126137433 4839560 complement(1213878..>1214216) 1 NC_009045.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein >1214216 4839560 PICST_60825 Pichia stipitis CBS 6054 predicted protein XP_001385240.1 1213878 R 322104 CDS PICST_89936 150865856 4839328 complement(1214569..1216950) 1 NC_009045.1 predicted protein 1216950 4839328 PICST_89936 Pichia stipitis CBS 6054 predicted protein XP_001385241.2 1214569 R 322104 CDS PICST_32319 150865620 4839329 1217880..1218857 1 NC_009045.1 predicted protein 1218857 4839329 PICST_32319 Pichia stipitis CBS 6054 predicted protein XP_001384914.2 1217880 D 322104 CDS PICST_36392 126136783 4839561 1219564..1220742 1 NC_009045.1 go_function: transaminase activity; go_process: metabolism; 3-phosphoserine transaminase 1220742 SER1 4839561 SER1 Pichia stipitis CBS 6054 3-phosphoserine transaminase XP_001384915.1 1219564 D 322104 CDS PICST_61171 150865621 4839562 <1221082..1222983 1 NC_009045.1 go_function: GTP binding; translation elongation factor activity; go_process: protein biosynthesis; translational elongation; predicted protein 1222983 4839562 PICST_61171 Pichia stipitis CBS 6054 predicted protein XP_001384916.2 <1221082 D 322104 CDS PICST_83915 150865857 4839563 complement(join(1223068..1224647,1224851..1224890)) 1 NC_009045.1 go_function: lyase activity; threonine ammonia-lyase activity; go_process: amino acid metabolism; isoleucine biosynthesis; threonine deaminase 1224890 ILV1 4839563 ILV1 Pichia stipitis CBS 6054 threonine deaminase XP_001385242.2 1223068 R 322104 CDS PICST_32323 150865622 4839330 1225686..1226687 1 NC_009045.1 predicted protein 1226687 4839330 PICST_32323 Pichia stipitis CBS 6054 predicted protein XP_001384917.2 1225686 D 322104 CDS PICST_67905 126136789 4839564 join(1227296..1227320,1227504..>1228837) 1 NC_009045.1 Sulfite reductase [NADPH] beta subunit (Extracellular matrix protein 17) 1227320 ECM17.2 4839564 ECM17.2 Pichia stipitis CBS 6054 Sulfite reductase [NADPH] beta subunit (Extracellular matrix protein 17) XP_001384918.1 1227296 D 322104 CDS PICST_67906 126136791 4839565 1228967..1231771 1 NC_009045.1 go_process: electron transport; Sulfite reductase [NADPH] beta subunit (Extracellular matrix protein 17) 1231771 ECM17.1 4839565 ECM17.1 Pichia stipitis CBS 6054 Sulfite reductase [NADPH] beta subunit (Extracellular matrix protein 17) XP_001384919.1 1228967 D 322104 CDS PICST_78401 126136793 4839566 1232726..1233571 1 NC_009045.1 predicted protein 1233571 4839566 PICST_78401 Pichia stipitis CBS 6054 predicted protein XP_001384920.1 1232726 D 322104 CDS PICST_32327 150865623 4839567 join(1233682..1233685,1233869..1234056,1234108..1235301,1235376..1235393) 1 NC_009045.1 predicted protein 1235393 4839567 PICST_32327 Pichia stipitis CBS 6054 predicted protein XP_001384921.2 1233682 D 322104 CDS PICST_32328 150865858 4839568 complement(1235477..1236535) 1 NC_009045.1 predicted protein 1236535 4839568 PICST_32328 Pichia stipitis CBS 6054 predicted protein XP_001385243.2 1235477 R 322104 CDS PICST_78524 126137441 4839331 complement(1237969..1239207) 1 NC_009045.1 go_component: cytoplasm; go_function: pyrophosphatase activity; exopolyphosphatase (ExopolyPase) (Metaphosphatase) 1239207 PPX1 4839331 PPX1 Pichia stipitis CBS 6054 exopolyphosphatase (ExopolyPase) (Metaphosphatase) XP_001385244.1 1237969 R 322104 CDS PICST_72313 150865859 4839332 complement(1239617..1241893) 1 NC_009045.1 go_component: membrane; go_function: mannosyltransferase activity; go_process: O-linked glycosylation; predicted protein 1241893 4839332 PICST_72313 Pichia stipitis CBS 6054 predicted protein XP_001385245.2 1239617 R 322104 CDS PICST_89961 150865860 4839333 complement(join(1242683..1242945,1242997..1246162)) 1 NC_009045.1 predicted protein 1246162 4839333 PICST_89961 Pichia stipitis CBS 6054 predicted protein XP_001385246.2 1242683 R 322104 CDS PICST_46967 150865624 4839334 1246789..1247739 1 NC_009045.1 thiamine pyrophosphokinase 1247739 TNR3 4839334 TNR3 Pichia stipitis CBS 6054 thiamine pyrophosphokinase XP_001384922.2 1246789 D 322104 CDS PICST_67911 150865625 4839569 join(1247972..1248016,1248080..1249966) 1 NC_009045.1 predicted protein 1249966 4839569 PICST_67911 Pichia stipitis CBS 6054 predicted protein XP_001384923.2 1247972 D 322104 CDS PICST_83712 150865626 4839661 1251054..1252043 1 NC_009045.1 go_component: lysosome; go_function: palmitoyl-(protein) hydrolase activity; go_process: protein modification; predicted protein 1252043 4839661 PICST_83712 Pichia stipitis CBS 6054 predicted protein XP_001384924.2 1251054 D 322104 CDS PICST_32335 150865627 4839662 1252976..1253425 1 NC_009045.1 predicted protein 1253425 4839662 PICST_32335 Pichia stipitis CBS 6054 predicted protein XP_001384925.2 1252976 D 322104 CDS PICST_78422 126136805 4839663 join(1254028..1254101,1254500..1255133) 1 NC_009045.1 ATP synthase F0 sector subunit 4 analogous to the bovine b subunit; go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP synthase F0 sector subunit 4 1255133 ATP4 4839663 ATP4 Pichia stipitis CBS 6054 ATP synthase F0 sector subunit 4 XP_001384926.1 1254028 D 322104 CDS PICST_47485 150865861 4839664 complement(1255271..1256560) 1 NC_009045.1 chromatin assembly complex, subunit 3 1256560 MSI1 4839664 MSI1 Pichia stipitis CBS 6054 chromatin assembly complex, subunit 3 XP_001385247.2 1255271 R 322104 CDS PICST_32338 126136807 4839335 join(1257077..1257132,1257234..1257948) 1 NC_009045.1 predicted protein 1257948 4839335 PICST_32338 Pichia stipitis CBS 6054 predicted protein XP_001384927.1 1257077 D 322104 CDS PICST_60985 150865862 4839665 complement(1258120..>1258719) 1 NC_009045.1 predicted protein >1258719 4839665 PICST_60985 Pichia stipitis CBS 6054 predicted protein XP_001385248.2 1258120 R 322104 CDS PICST_32340 150865863 4839336 complement(join(1259819..1260760,1260843..1260845)) 1 NC_009045.1 predicted protein 1260845 4839336 PICST_32340 Pichia stipitis CBS 6054 predicted protein XP_001385249.2 1259819 R 322104 CDS PICST_59858 126136809 4839337 1261187..1261651 1 NC_009045.1 predicted protein 1261651 4839337 PICST_59858 Pichia stipitis CBS 6054 predicted protein XP_001384928.1 1261187 D 322104 CDS PICST_67916 150865628 4839666 1263303..1267211 1 NC_009045.1 predicted protein 1267211 4839666 PICST_67916 Pichia stipitis CBS 6054 predicted protein XP_001384929.2 1263303 D 322104 CDS PICST_47116 126136813 4839667 1268123..1269184 1 NC_009045.1 aryl-alcohol dehydrogenases 1269184 AAD5 4839667 AAD5 Pichia stipitis CBS 6054 aryl-alcohol dehydrogenases XP_001384930.1 1268123 D 322104 CDS PICST_47463 126137453 4839668 complement(1269297..1270202) 1 NC_009045.1 Predicted glutamine synthetase glutamine amidotransferase 1270202 GLN2 4839668 GLN2 Pichia stipitis CBS 6054 Predicted glutamine synthetase glutamine amidotransferase XP_001385250.1 1269297 R 322104 CDS PICST_46914 150865629 4839493 1272116..1273051 1 NC_009045.1 glutathione S- transferase, nitrogen catabolite repression regulator 1273051 URE2 4839493 URE2 Pichia stipitis CBS 6054 glutathione S- transferase, nitrogen catabolite repression regulator XP_001384931.2 1272116 D 322104 CDS PICST_36402 126136817 4839669 1273454..1274317 1 NC_009045.1 predicted protein 1274317 4839669 PICST_36402 Pichia stipitis CBS 6054 predicted protein XP_001384932.1 1273454 D 322104 CDS PICST_16647 150865630 4839670 join(<1274890..1276426,1276532..>1276605) 1 NC_009045.1 go_component: membrane; go_process: transport; predicted protein 1276426 4839670 PICST_16647 Pichia stipitis CBS 6054 predicted protein XP_001384933.2 <1274890 D 322104 CDS PICST_60759 150865864 4839642 complement(<1277163..1277750) 1 NC_009045.1 go_component: extracellular region; go_process: cell wall biosynthesis; predicted protein 1277750 4839642 PICST_60759 Pichia stipitis CBS 6054 predicted protein XP_001385251.2 <1277163 R 322104 CDS PICST_78459 126136821 4839494 1278294..1278758 1 NC_009045.1 Mitochondrial import inner membrane translocase subunit TIM17 (Mitochondrial protein import protein 2) (Mitochondrial inner membrane protein MIM17); go_component: mitochondrial inner membrane presequence translocase complex; go_function: protein translocase activity; go_process: protein transport; mitochondrial inner membrane import translocase subunit 1278758 TIM17 4839494 TIM17 Pichia stipitis CBS 6054 mitochondrial inner membrane import translocase subunit XP_001384934.1 1278294 D 322104 CDS PICST_15651 150865631 4839643 join(<1280146..1280263,1280303..1280748,1280815..>1282428) 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine-threonine protein kinase, PKA suppressor 1280748 YAK2 4839643 YAK2 Pichia stipitis CBS 6054 serine-threonine protein kinase, PKA suppressor XP_001384935.2 <1280146 D 322104 CDS PICST_46361 126136825 4839644 1283523..1284161 1 NC_009045.1 protein tyrosine/serine phosphatase 1284161 OCA1 4839644 OCA1 Pichia stipitis CBS 6054 protein tyrosine/serine phosphatase XP_001384936.1 1283523 D 322104 CDS PICST_67918 126136827 4839645 1285183..1285947 1 NC_009045.1 Chromodomain-helicase DNA-binding protein 1285947 CDH2 4839645 CDH2 Pichia stipitis CBS 6054 Chromodomain-helicase DNA-binding protein XP_001384937.1 1285183 D 322104 CDS PICST_67919 150865632 4839646 1287336..1289321 1 NC_009045.1 DNA-binding protein 1289321 RAP1 4839646 RAP1 Pichia stipitis CBS 6054 DNA-binding protein XP_001384938.2 1287336 D 322104 CDS PICST_89695 126137457 4839647 complement(1290757..1291866) 1 NC_009045.1 family 17 glucosidase SCW4 precursor (Soluble cell wall protein 4); Soluble Cell Wall protein 1291866 SCW4.1 4839647 SCW4.1 Pichia stipitis CBS 6054 Soluble Cell Wall protein XP_001385252.1 1290757 R 322104 CDS PICST_90001 150865633 4839495 1295654..1299622 1 NC_009045.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; Ubiquitin carboxyl-terminal hydrolase 1299622 UBP15 4839495 UBP15 Pichia stipitis CBS 6054 Ubiquitin carboxyl-terminal hydrolase XP_001384939.2 1295654 D 322104 CDS PICST_46142 150865865 4839648 complement(1299768..>1300247) 1 NC_009045.1 go_function: nucleotidyltransferase activity; go_process: biosynthesis; predicted protein >1300247 4839648 PICST_46142 Pichia stipitis CBS 6054 predicted protein XP_001385253.2 1299768 R 322104 CDS PICST_72260 150865866 4839496 complement(1300875..1303607) 1 NC_009045.1 predicted protein 1303607 4839496 PICST_72260 Pichia stipitis CBS 6054 predicted protein XP_001385254.2 1300875 R 322104 CDS PICST_47344 150865634 4839497 join(<1304137..1305806,1305930..1306044) 1 NC_009045.1 go_function: RNA binding; go_process: protein biosynthesis; predicted protein 1306044 4839497 PICST_47344 Pichia stipitis CBS 6054 predicted protein XP_001384940.2 <1304137 D 322104 CDS PICST_78490 126136835 4839649 1306820..1307152 1 NC_009045.1 go_component: mitochondrial electron transport chain; go_function: heme binding; electron transporter activity; go_process: electron transport; cytochrome c 1307152 CYC1 4839649 CYC1 Pichia stipitis CBS 6054 cytochrome c XP_001384941.1 1306820 D 322104 CDS PICST_32359 150865867 4839650 complement(1307797..1309890) 1 NC_009045.1 go_function: oxidoreductase activity; go_process: electron transport; long chain fatty acid oxidase 1309890 FAO2 4839650 FAO2 Pichia stipitis CBS 6054 long chain fatty acid oxidase XP_001385255.2 1307797 R 322104 CDS PICST_60430 126136837 4839498 1311596..1312360 1 NC_009045.1 predicted protein 1312360 4839498 PICST_60430 Pichia stipitis CBS 6054 predicted protein XP_001384942.1 1311596 D 322104 CDS PICST_32361 150865635 4839541 1313079..1314776 1 NC_009045.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1314776 4839541 PICST_32361 Pichia stipitis CBS 6054 predicted protein XP_001384943.2 1313079 D 322104 CDS PICST_59845 150865636 4839542 <1316196..>1317020 1 NC_009045.1 predicted protein >1317020 4839542 PICST_59845 Pichia stipitis CBS 6054 predicted protein XP_001384944.2 <1316196 D 322104 CDS PICST_60398 126137465 4839543 complement(join(1317737..1320429,1320511..1320629,1320690..>1321981)) 1 NC_009045.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 1320629 4839543 PICST_60398 Pichia stipitis CBS 6054 predicted protein XP_001385256.1 1317737 R 322104 CDS PICST_32365 150865868 4839499 complement(1324251..1325213) 1 NC_009045.1 predicted protein 1325213 4839499 PICST_32365 Pichia stipitis CBS 6054 predicted protein XP_001385257.2 1324251 R 322104 CDS PICST_60598 126136843 4839500 join(1327591..1327812,1327873..1328604) 1 NC_009045.1 6-phosphogluconolactonase [EC:1.1.1.49] [KO:K00036]; Glucose-6-phosphate 1-dehydrogenase 1328604 SOL1 4839500 SOL1 Pichia stipitis CBS 6054 Glucose-6-phosphate 1-dehydrogenase XP_001384945.1 1327591 D 322104 CDS PICST_60020 150865869 4839544 complement(join(1328916..1329398,1329426..1329875)) 1 NC_009045.1 catalyzes transfer of the sulfane atom of thiosulfate to cyanide to form sulfite and thiocyanate; thiosulfate sulfurtransferase 1329875 THT5 4839544 THT5 Pichia stipitis CBS 6054 thiosulfate sulfurtransferase XP_001385258.2 1328916 R 322104 CDS PICST_46601 150865870 4839501 complement(1330392..1332434) 1 NC_009045.1 go_function: hydro-lyase activity; go_process: tRNA processing; predicted protein 1332434 4839501 PICST_46601 Pichia stipitis CBS 6054 predicted protein XP_001385259.2 1330392 R 322104 CDS PICST_46342 150865871 4839437 complement(1332860..>1334794) 1 NC_009045.1 go_component: microtubule associated complex; go_function: motor activity; ATP binding; predicted protein >1334794 4839437 PICST_46342 Pichia stipitis CBS 6054 predicted protein XP_001385260.2 1332860 R 322104 CDS PICST_47218 150865872 4839438 complement(1335604..>1336323) 1 NC_009045.1 predicted protein >1336323 4839438 PICST_47218 Pichia stipitis CBS 6054 predicted protein XP_001385261.2 1335604 R 322104 CDS PICST_25248 150865637 4839439 join(<1338016..1338232,1338332..1338355,1338485..>1339722) 1 NC_009045.1 predicted protein 1338355 4839439 PICST_25248 Pichia stipitis CBS 6054 predicted protein XP_001384946.2 <1338016 D 322104 CDS PICST_67925 126137477 4839545 complement(join(1340148..1340883,1341561..1341637)) 1 NC_009045.1 predicted protein 1341637 4839545 PICST_67925 Pichia stipitis CBS 6054 predicted protein XP_001385262.1 1340148 R 322104 CDS PICST_89833 150865638 4839440 join(1344146..1344323,1344444..1344657,1344793..1347898) 1 NC_009045.1 similar to SPT3 Dosage dependent suppressor of Ty-induced promoter mutations. Homolog of Mga2. Spt23p and Mga2p differentially activate and regulate OLE1 transcription; SPT3 Dosage dependent suppressor of Ty-induced promoter mutations-like protein 1347898 SPT23 4839440 SPT23 Pichia stipitis CBS 6054 SPT3 Dosage dependent suppressor of Ty-induced promoter mutations-like protein XP_001384947.2 1344146 D 322104 CDS PICST_59732 150865639 4839546 1348464..1349243 1 NC_009045.1 go_function: uroporphyrinogen-III synthase activity; go_process: porphyrin biosynthesis; heme biosynthesis; Uroporphyrinogen-III synthase (UROS) (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]) (UROIIIS) 1349243 HEM4 4839546 HEM4 Pichia stipitis CBS 6054 Uroporphyrinogen-III synthase (UROS) (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]) (UROIIIS) XP_001384948.2 1348464 D 322104 CDS PICST_89873 126137479 4839547 complement(1349491..1351518) 1 NC_009045.1 go_function: catalytic activity; go_process: metabolism; acetyl-coenzyme A synthetase (Acetate--CoA ligase 1) (Acyl-activating enzyme 1) 1351518 ACS1 4839547 ACS1 Pichia stipitis CBS 6054 acetyl-coenzyme A synthetase (Acetate--CoA ligase 1) (Acyl-activating enzyme 1) XP_001385263.1 1349491 R 322104 CDS PICST_47071 150865873 4839441 complement(1353935..1355053) 1 NC_009045.1 go_function: hydroxymethylbilane synthase activity; go_process: porphyrin biosynthesis; predicted protein 1355053 4839441 PICST_47071 Pichia stipitis CBS 6054 predicted protein XP_001385264.2 1353935 R 322104 CDS PICST_60029 150865874 4839442 complement(join(<1356498..1356672,1356712..1358366)) 1 NC_009045.1 predicted protein 1358366 4839442 PICST_60029 Pichia stipitis CBS 6054 predicted protein XP_001385265.2 <1356498 R 322104 CDS PICST_60166 150865875 4839443 complement(1358978..1360672) 1 NC_009045.1 go_function: nucleic acid binding; nuclease activity; go_process: DNA metabolism; predicted protein 1360672 4839443 PICST_60166 Pichia stipitis CBS 6054 predicted protein XP_001385266.2 1358978 R 322104 CDS PICST_19389 150865876 4839444 complement(<1360673..>1361836) 1 NC_009045.1 predicted protein >1361836 4839444 PICST_19389 Pichia stipitis CBS 6054 predicted protein XP_001385267.2 <1360673 R 322104 CDS PICST_46211 150865640 4839445 1362608..1363162 1 NC_009045.1 predicted protein 1363162 4839445 PICST_46211 Pichia stipitis CBS 6054 predicted protein XP_001384949.2 1362608 D 322104 CDS PICST_83803 150865877 4839548 complement(join(1363450..1364364,1364395..1365387)) 1 NC_009045.1 go_function: methylenetetrahydrofolate reductase (NADPH) activity; go_process: methionine metabolism; predicted protein 1365387 4839548 PICST_83803 Pichia stipitis CBS 6054 predicted protein XP_001385268.2 1363450 R 322104 CDS PICST_46861 150865878 4839593 complement(1365934..1366743) 1 NC_009045.1 predicted protein 1366743 4839593 PICST_46861 Pichia stipitis CBS 6054 predicted protein XP_001385269.2 1365934 R 322104 CDS PICST_78343 150865641 4839594 1368830..1369870 1 NC_009045.1 go_function: oxidoreductase activity; malate dehydrogenase 1369870 MDH2 4839594 MDH2 Pichia stipitis CBS 6054 malate dehydrogenase XP_001384950.2 1368830 D 322104 CDS PICST_32384 150865879 4839549 complement(1374261..1376993) 1 NC_009045.1 hypothetical protein 1376993 4839549 PICST_32384 Pichia stipitis CBS 6054 hypothetical protein XP_001385270.2 1374261 R 322104 CDS PICST_46351 150865880 4839595 complement(join(1377475..1378561,1378634..>1380360)) 1 NC_009045.1 go_function: peptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1378561 4839595 PICST_46351 Pichia stipitis CBS 6054 predicted protein XP_001385271.2 1377475 R 322104 CDS PICST_46716 126136855 4839596 join(1381163..1381249,1381430..1382431) 1 NC_009045.1 uroporphyrinogen decarboxylase fifth enzyme in the heme biosynthetic pathway; go_function: uroporphyrinogen decarboxylase activity; go_process: porphyrin biosynthesis; uroporphyrinogen decarboxylase 1382431 HEM12 4839596 HEM12 Pichia stipitis CBS 6054 uroporphyrinogen decarboxylase XP_001384951.1 1381163 D 322104 CDS PICST_60913 150865642 4839550 1382905..1384719 1 NC_009045.1 hypothetical conserved protein 1384719 4839550 PICST_60913 Pichia stipitis CBS 6054 hypothetical conserved protein XP_001384952.2 1382905 D 322104 CDS PICST_15102 150865881 4839521 complement(<1384858..>1387284) 1 NC_009045.1 required for mitotic diploid-specific recombination and repair; go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; helicase >1387284 RDH54 4839521 RDH54 Pichia stipitis CBS 6054 helicase XP_001385272.2 <1384858 R 322104 CDS PICST_32389 150865643 4839597 1389308..1393618 1 NC_009045.1 predicted protein 1393618 4839597 PICST_32389 Pichia stipitis CBS 6054 predicted protein XP_001384953.2 1389308 D 322104 CDS PICST_46506 150865644 4839522 <1394569..>1395576 1 NC_009045.1 predicted protein >1395576 4839522 PICST_46506 Pichia stipitis CBS 6054 predicted protein XP_001384954.2 <1394569 D 322104 CDS PICST_32391 150865645 4839523 1395858..1396556 1 NC_009045.1 predicted protein 1396556 4839523 PICST_32391 Pichia stipitis CBS 6054 predicted protein XP_001384955.2 1395858 D 322104 CDS PICST_17702 150865646 4839524 join(1396779..1397481,1397527..>1398056) 1 NC_009045.1 predicted protein 1397481 4839524 PICST_17702 Pichia stipitis CBS 6054 predicted protein XP_001384956.2 1396779 D 322104 CDS PICST_47067 150865882 4839525 complement(1399046..1399381) 1 NC_009045.1 DNA-directed RNA polymerases III 12.5 kDa polypeptide; go_function: DNA binding; transcription factor activity; DNA-directed RNA polymerase activity; go_process: RNA elongation; regulation of transcription, DNA-dependent; transcription; RNA polymerase III C11 subunit 1399381 RPC11 4839525 RPC11 Pichia stipitis CBS 6054 RNA polymerase III C11 subunit XP_001385273.2 1399046 R 322104 CDS PICST_60622 150865647 4839598 join(<1400039..1400243,1400277..1400461,1400489..1400544,1400623..1402198) 1 NC_009045.1 go_component: origin recognition complex; nucleus; go_process: DNA replication; Origin recognition complex subunit 2 (Origin recognition complex protein 71 kDa subunit) 1402198 ORC2 4839598 ORC2 Pichia stipitis CBS 6054 Origin recognition complex subunit 2 (Origin recognition complex protein 71 kDa subunit) XP_001384957.2 <1400039 D 322104 CDS PICST_47197 150865648 4839526 join(1402591..1403835,1403947..1404117,1404712..1405104,1405321..1405782) 1 NC_009045.1 Ark-family serine/threonine protein kinase regulates the organization and function of the actin cytoskeleton through the phosphorylation of the Pan1p-Sla1p-End3p protein complex; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Ark-family serine/threonine protein kinase 1405782 AKL1 4839526 AKL1 Pichia stipitis CBS 6054 Ark-family serine/threonine protein kinase XP_001384958.2 1402591 D 322104 CDS PICST_32396 150865649 4839527 1406081..1408909 1 NC_009045.1 conserved hypothetical protein 1408909 4839527 PICST_32396 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384959.2 1406081 D 322104 CDS PICST_89939 150865650 4839528 1410861..1411967 1 NC_009045.1 conserved hypothetical protein 1411967 4839528 PICST_89939 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384960.2 1410861 D 322104 CDS PICST_8958 126137501 4839529 complement(<1412340..>1412774) 1 NC_009045.1 go_function: translation initiation factor activity; go_process: translational initiation; translation initiation factor eIF1A >1412774 TIF11 4839529 TIF11 Pichia stipitis CBS 6054 translation initiation factor eIF1A XP_001385274.1 <1412340 R 322104 CDS PICST_47244 150865651 4839599 1412991..1413890 1 NC_009045.1 CTD kinase gamma subunit (CTD kinase 32 kDa subunit) (CTDK-I gamma subunit); CTD kinase-I gamma subunit 1413890 CTK3 4839599 CTK3 Pichia stipitis CBS 6054 CTD kinase-I gamma subunit XP_001384961.2 1412991 D 322104 CDS PICST_60441 150865883 4839530 complement(join(1414117..1417420,1417573..1417595)) 1 NC_009045.1 go_function: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; go_process: trehalose biosynthesis; alpha,alpha-trehalose-phosphate synthase, regulatory subunit 1417595 TPS3 4839530 TPS3 Pichia stipitis CBS 6054 alpha,alpha-trehalose-phosphate synthase, regulatory subunit XP_001385275.2 1414117 R 322104 CDS PICST_32401 150865884 4839600 complement(1421498..1426219) 1 NC_009045.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; ATP-dependent transporter 1426219 BPT1 4839600 BPT1 Pichia stipitis CBS 6054 ATP-dependent transporter XP_001385276.2 1421498 R 322104 CDS PICST_59713 126137507 4839610 complement(1427652..>1427855) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein >1427855 4839610 PICST_59713 Pichia stipitis CBS 6054 predicted protein XP_001385277.1 1427652 R 322104 CDS PICST_47288 126136877 4839611 1430105..1431508 1 NC_009045.1 conserved hypothetical protein 1431508 4839611 PICST_47288 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384962.1 1430105 D 322104 CDS PICST_72287 150865652 4839531 1432058..1434457 1 NC_009045.1 go_function: glutamate-tRNA ligase activity; ATP binding; go_process: glutamyl-tRNA aminoacylation; glutaminyl-tRNA synthetase 1434457 GLN4 4839531 GLN4 Pichia stipitis CBS 6054 glutaminyl-tRNA synthetase XP_001384963.2 1432058 D 322104 CDS PICST_89530 150865653 4839427 1438386..1439975 1 NC_009045.1 regulatory subunit for phosphoprotein phosphatase type 1 (PP-1) (PIG); regulatory subunit for phosphoprotein phosphatase type 1 (PP-1) 1439975 GAC1 4839427 GAC1 Pichia stipitis CBS 6054 regulatory subunit for phosphoprotein phosphatase type 1 (PP-1) XP_001384964.2 1438386 D 322104 CDS PICST_60761 150865885 4839428 complement(1441593..1442399) 1 NC_009045.1 predicted protein 1442399 4839428 PICST_60761 Pichia stipitis CBS 6054 predicted protein XP_001385278.2 1441593 R 322104 CDS PICST_77977 150865654 4839612 1443213..1446716 1 NC_009045.1 go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; DNA-directed RNA polymerase I 1446716 RPA135 4839612 RPA135 Pichia stipitis CBS 6054 DNA-directed RNA polymerase I XP_001384965.2 1443213 D 322104 CDS PICST_47307 126137511 4839429 complement(1447045..1447767) 1 NC_009045.1 pantothenate kinase-like protein 1447767 YFH7.1 4839429 YFH7.1 Pichia stipitis CBS 6054 pantothenate kinase-like protein XP_001385279.1 1447045 R 322104 CDS PICST_46820 150865655 4839613 1449118..>1449801 1 NC_009045.1 predicted protein >1449801 4839613 PICST_46820 Pichia stipitis CBS 6054 predicted protein XP_001384966.2 1449118 D 322104 CDS PICST_47138 150865886 4839430 complement(join(1450419..1450872,1450945..1451894)) 1 NC_009045.1 conserved hypothetical protein 1451894 4839430 PICST_47138 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385280.2 1450419 R 322104 CDS PICST_65824 150865887 4839614 complement(join(1452185..1452987,1453078..1453940,1454103..1454272)) 1 NC_009045.1 may be required for nuclear division; nuclear division protein 1454272 RMD8 4839614 RMD8 Pichia stipitis CBS 6054 nuclear division protein XP_001385281.2 1452185 R 322104 CDS PICST_89978 126136887 4839615 1454691..1456853 1 NC_009045.1 Glutamyl-tRNA synthetase, cytoplasmic (Glutamate--tRNA ligase) (GluRS) (P85); go_function: glutamate-tRNA ligase activity; ATP binding; go_process: glutamyl-tRNA aminoacylation; glutamine-tRNA ligase 1456853 SYE1 4839615 SYE1 Pichia stipitis CBS 6054 glutamine-tRNA ligase XP_001384967.1 1454691 D 322104 CDS PICST_32412 150865656 4839431 1458060..1459250 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; ser/thr protein kinase 1459250 PAK3 4839431 PAK3 Pichia stipitis CBS 6054 ser/thr protein kinase XP_001384968.2 1458060 D 322104 CDS PICST_32413 150865888 4839432 complement(1459680..1460105) 1 NC_009045.1 predicted protein 1460105 4839432 PICST_32413 Pichia stipitis CBS 6054 predicted protein XP_001385282.2 1459680 R 322104 CDS PICST_67937 150865889 4839616 complement(1461284..1463482) 1 NC_009045.1 Protein involved in regulation of cell size whi (Wee) mutants give small cell size putative RNA binding protein; Protein involved in regulation of cell size putative RNA binding protein 1463482 WHI3 4839616 WHI3 Pichia stipitis CBS 6054 Protein involved in regulation of cell size putative RNA binding protein XP_001385283.2 1461284 R 322104 CDS PICST_72684 150865657 4839617 1466082..1466735 1 NC_009045.1 Transport protein particle 33 kDa subunit (TRAPP 33 kDa subunit) 1466735 TRS33 4839617 TRS33 Pichia stipitis CBS 6054 Transport protein particle 33 kDa subunit (TRAPP 33 kDa subunit) XP_001384969.2 1466082 D 322104 CDS PICST_32416 150865658 4839433 join(1467286..1468159,1468199..1468389) 1 NC_009045.1 conserved hypothetical protein 1468389 4839433 PICST_32416 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001384970.2 1467286 D 322104 CDS PICST_60150 150865890 4839434 complement(join(1468481..1471321,1471340..1471599,1471630..1471898,1471935..>1472173)) 1 NC_009045.1 go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; mitohcondrial RNA polymerase 1471898 RPO32 4839434 RPO32 Pichia stipitis CBS 6054 mitohcondrial RNA polymerase XP_001385284.2 1468481 R 322104 CDS PICST_60752 150865659 4839618 1472668..1473993 1 NC_009045.1 Arginine biosynthesis bifunctional protein ARG7, mitochondrial precursor (Extracellular matrix protein 40) [Includes: Glutamate N-acetyltransferase (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase) Amino-acid acetyltransferase (N-acetylglutamate synthase) (AGS)] [Contains: Arginine biosynthesis bifunctional protein ARG7 alpha chain Arginine biosynthesis bifunctional protein ARG7 beta chain]; go_function: glutamate N-acetyltransferase activity; go_process: arginine biosynthesis; ornithine acetyltransferase (ARGJ) 1473993 ECM40 4839618 ECM40 Pichia stipitis CBS 6054 ornithine acetyltransferase (ARGJ) XP_001384971.2 1472668 D 322104 CDS PICST_32419 150865660 4839435 1474496..1476073 1 NC_009045.1 predicted protein 1476073 4839435 PICST_32419 Pichia stipitis CBS 6054 predicted protein XP_001384972.2 1474496 D 322104 CDS PICST_32420 150865891 4839436 complement(1477701..1478702) 1 NC_009045.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 1478702 4839436 PICST_32420 Pichia stipitis CBS 6054 predicted protein XP_001385285.2 1477701 R 322104 CDS PICST_32421 150865661 4839619 1479128..1479601 1 NC_009045.1 predicted protein 1479601 4839619 PICST_32421 Pichia stipitis CBS 6054 predicted protein XP_001384973.2 1479128 D 322104 CDS PICST_59773 150865892 4839726 complement(join(1479825..1479957,1480006..1480172,1480200..1481746,1481771..1481879)) 1 NC_009045.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; conserved hypothetical protein 1481879 4839726 PICST_59773 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385286.2 1479825 R 322104 CDS PICST_67940 126137527 4839620 complement(join(1482613..1483748,1483896..1483911)) 1 NC_009045.1 go_function: metalloexopeptidase activity; go_process: proteolysis and peptidolysis; Curved DNA-binding protein (42 kDa protein) 1483911 CDB4 4839620 CDB4 Pichia stipitis CBS 6054 Curved DNA-binding protein (42 kDa protein) XP_001385287.1 1482613 R 322104 CDS PICST_46875 126136901 4839621 join(1484279..1484455,1484537..1485067) 1 NC_009045.1 protein required for amino acid permease transport from the Golgi to the cell surface 1485067 LST7 4839621 LST7 Pichia stipitis CBS 6054 protein required for amino acid permease transport from the Golgi to the cell surface XP_001384974.1 1484279 D 322104 CDS PICST_61034 150865893 4839727 complement(1485188..>1487056) 1 NC_009045.1 regulator of cell wall mannosyl phosphorylation >1487056 MNN4.1 4839727 MNN4.1 Pichia stipitis CBS 6054 regulator of cell wall mannosyl phosphorylation XP_001385288.2 1485188 R 322104 CDS PICST_46670 126137531 4839622 complement(1487869..>1488129) 1 NC_009045.1 go_function: electron transporter activity; go_process: electron transport; Glutaredoxin >1488129 TTR1 4839622 TTR1 Pichia stipitis CBS 6054 Glutaredoxin XP_001385289.1 1487869 R 322104 CDS PICST_46242 126137533 4839623 complement(1488548..1490179) 1 NC_009045.1 putative allantoate permease 1490179 ALT2 4839623 ALT2 Pichia stipitis CBS 6054 putative allantoate permease XP_001385290.1 1488548 R 322104 CDS PICST_65827 126137535 4839624 complement(1490781..1492415) 1 NC_009045.1 putative allantoate permease 1492415 ALT1 4839624 ALT1 Pichia stipitis CBS 6054 putative allantoate permease XP_001385291.1 1490781 R 322104 CDS PICST_89535 150865894 4839625 complement(1493010..1495424) 1 NC_009045.1 predicted protein 1495424 4839625 PICST_89535 Pichia stipitis CBS 6054 predicted protein XP_001385292.2 1493010 R 322104 CDS PICST_46701 150865662 4839626 1496122..1497963 1 NC_009045.1 go_component: exocyst; go_process: exocytosis; predicted protein 1497963 4839626 PICST_46701 Pichia stipitis CBS 6054 predicted protein XP_001384975.2 1496122 D 322104 CDS PICST_32431 150865663 4839728 1500085..1500957 1 NC_009045.1 predicted protein 1500957 4839728 PICST_32431 Pichia stipitis CBS 6054 predicted protein XP_001384976.2 1500085 D 322104 CDS PICST_36443 150865664 4839729 1504626..1505894 1 NC_009045.1 predicted protein 1505894 4839729 PICST_36443 Pichia stipitis CBS 6054 predicted protein XP_001384977.2 1504626 D 322104 CDS PICST_32433 150865665 4839730 1507425..1508891 1 NC_009045.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; predicted protein 1508891 4839730 PICST_32433 Pichia stipitis CBS 6054 predicted protein XP_001384978.2 1507425 D 322104 CDS PICST_36445 150865666 4839731 1510779..1512203 1 NC_009045.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; predicted protein 1512203 4839731 PICST_36445 Pichia stipitis CBS 6054 predicted protein XP_001384979.2 1510779 D 322104 CDS PICST_83711 126137539 4839732 complement(1512471..1513220) 1 NC_009045.1 predicted protein 1513220 4839732 PICST_83711 Pichia stipitis CBS 6054 predicted protein XP_001385293.1 1512471 R 322104 CDS PICST_67944 150865667 4839627 1514737..1516194 1 NC_009045.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; predicted protein 1516194 4839627 PICST_67944 Pichia stipitis CBS 6054 predicted protein XP_001384980.2 1514737 D 322104 CDS PICST_72239 150865668 4839733 1516507..1519869 1 NC_009045.1 TPR-containing nuclear phosphoprotein that regulates K(+) uptake required for normal CLN1 and CLN2 G1 cyclin expression; protein required for normal CLN1 and CLN2 G1 cyclin expression 1519869 CTR9 4839733 CTR9 Pichia stipitis CBS 6054 protein required for normal CLN1 and CLN2 G1 cyclin expression XP_001384981.2 1516507 D 322104 CDS PICST_46427 150865669 4839734 <1521960..1524410 1 NC_009045.1 predicted protein 1524410 4839734 PICST_46427 Pichia stipitis CBS 6054 predicted protein XP_001384982.2 <1521960 D 322104 CDS PICST_67948 126136919 4839735 1525310..1526032 1 NC_009045.1 predicted protein 1526032 4839735 PICST_67948 Pichia stipitis CBS 6054 predicted protein XP_001384983.1 1525310 D 322104 CDS PICST_36448 150865670 4839345 join(1528086..1528291,1528412..1529711) 1 NC_009045.1 go_function: hydrolase activity; guanine deaminase (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH) 1529711 GAH1 4839345 GAH1 Pichia stipitis CBS 6054 guanine deaminase (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH) XP_001384984.2 1528086 D 322104 CDS PICST_32442 150865671 4839346 1530573..1531463 1 NC_009045.1 predicted protein 1531463 4839346 PICST_32442 Pichia stipitis CBS 6054 predicted protein XP_001384985.2 1530573 D 322104 CDS PICST_32443 150865672 4839347 1532360..1533250 1 NC_009045.1 predicted protein 1533250 4839347 PICST_32443 Pichia stipitis CBS 6054 predicted protein XP_001384986.2 1532360 D 322104 CDS PICST_60459 150865673 4839348 1534248..1535138 1 NC_009045.1 predicted protein 1535138 4839348 PICST_60459 Pichia stipitis CBS 6054 predicted protein XP_001384987.2 1534248 D 322104 CDS PICST_32445 150865674 4839349 1536053..1536943 1 NC_009045.1 predicted protein 1536943 4839349 PICST_32445 Pichia stipitis CBS 6054 predicted protein XP_001384988.2 1536053 D 322104 CDS PICST_60535 150865675 4839350 1537985..1538875 1 NC_009045.1 predicted protein 1538875 4839350 PICST_60535 Pichia stipitis CBS 6054 predicted protein XP_001384989.2 1537985 D 322104 CDS PICST_67949 150865895 4839351 complement(1539343..1541616) 1 NC_009045.1 predicted protein 1541616 4839351 PICST_67949 Pichia stipitis CBS 6054 predicted protein XP_001385294.2 1539343 R 322104 CDS PICST_32448 150865676 4839628 1544759..1545289 1 NC_009045.1 predicted protein 1545289 4839628 PICST_32448 Pichia stipitis CBS 6054 predicted protein XP_001384990.2 1544759 D 322104 CDS PICST_67950 126137543 4839352 complement(1545724..1546455) 1 NC_009045.1 Pheromone receptor transcription factor (GRM/PRTF protein) Involved in cell-type-specific transcription and pheromone response; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcription factor of the MADS box family 1546455 MCM1 4839352 MCM1 Pichia stipitis CBS 6054 transcription factor of the MADS box family XP_001385295.1 1545724 R 322104 CDS PICST_32450 150865896 4839629 complement(1547726..1549012) 1 NC_009045.1 Iswi One Complex PWWP domain protein; Transcription coactivator 1549012 IOC4 4839629 IOC4 Pichia stipitis CBS 6054 Transcription coactivator XP_001385296.2 1547726 R 322104 CDS PICST_60416 150865897 4839085 complement(join(1549368..1550051,1550112..1550250,1550272..1550432)) 1 NC_009045.1 predicted protein 1550432 4839085 PICST_60416 Pichia stipitis CBS 6054 predicted protein XP_001385297.2 1549368 R 322104 CDS PICST_72279 150865677 4839086 1552300..1554990 1 NC_009045.1 go_function: phosphorylase activity; go_process: carbohydrate metabolism; Releases glucose-1-phosphate from glycogen 1554990 GPH1 4839086 GPH1 Pichia stipitis CBS 6054 Releases glucose-1-phosphate from glycogen XP_001384991.2 1552300 D 322104 CDS PICST_78088 126136937 4839353 join(1556191..1557663,1557721..>1558326) 1 NC_009045.1 go_function: serine carboxypeptidase activity; go_process: proteolysis and peptidolysis; carboxypeptidase B-like processing protease 1557663 KEX1 4839353 KEX1 Pichia stipitis CBS 6054 carboxypeptidase B-like processing protease XP_001384992.1 1556191 D 322104 CDS PICST_32454 126136939 4839354 1558912..1559649 1 NC_009045.1 predicted protein 1559649 4839354 PICST_32454 Pichia stipitis CBS 6054 predicted protein XP_001384993.1 1558912 D 322104 CDS PICST_78465 126136941 4839355 join(1560475..1560521,1561022..1561412) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: RNA binding; structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein S18B 1561412 RPS188 4839355 RPS188 Pichia stipitis CBS 6054 ribosomal protein S18B XP_001384994.1 1560475 D 322104 CDS PICST_65833 150865898 4839280 complement(join(1562693..1563167,1563225..1563860,1563987..1564198)) 1 NC_009045.1 Homeodomain protein that binds leu-tRNA gene. acts as a repressor at early cell cycle boxes (ECBs) to restrict their activity to the M/G1 phase of the cell cycle; go_component: nucleus; go_function: DNA binding; transcription factor activity; go_process: regulation of transcription, DNA-dependent; homeobox- domain containing protein 1564198 YOX1 4839280 YOX1 Pichia stipitis CBS 6054 homeobox- domain containing protein XP_001385298.2 1562693 R 322104 CDS PICST_47340 126136943 4839087 1567139..1569106 1 NC_009045.1 go_function: hydrolase activity; Phosphate metabolism transcription is regulated by PHO system 1569106 PPN1 4839087 PPN1 Pichia stipitis CBS 6054 Phosphate metabolism transcription is regulated by PHO system XP_001384995.1 1567139 D 322104 CDS PICST_83812 126136945 4839281 1569581..1570519 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: translational elongation; protein biosynthesis; ribosomal protein P0 (A0) (L10E) 1570519 RPP0 4839281 RPP0 Pichia stipitis CBS 6054 ribosomal protein P0 (A0) (L10E) XP_001384996.1 1569581 D 322104 CDS PICST_32459 150865678 4839282 1570908..1572164 1 NC_009045.1 hypothetical protein 1572164 4839282 PICST_32459 Pichia stipitis CBS 6054 hypothetical protein XP_001384997.2 1570908 D 322104 CDS PICST_60011 126137551 4839283 complement(1572371..1572766) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1572766 4839283 PICST_60011 Pichia stipitis CBS 6054 predicted protein XP_001385299.1 1572371 R 322104 CDS PICST_78497 126137553 4839088 complement(1573245..1576868) 1 NC_009045.1 Required for normal pre-rRNA Processing. Member of a group of seven genes whose expression is repressed during growth on glucose before and during the diauxic shift; pre-rRNA processing protein 1576868 RRP12 4839088 RRP12 Pichia stipitis CBS 6054 pre-rRNA processing protein XP_001385300.1 1573245 R 322104 CDS PICST_78111 150865899 4839089 complement(1577309..1579156) 1 NC_009045.1 conserved membrane protein with BTB/POZ domain 1579156 4839089 PICST_78111 Pichia stipitis CBS 6054 conserved membrane protein with BTB/POZ domain XP_001385301.2 1577309 R 322104 CDS PICST_32463 126136949 4839090 1580623..1581627 1 NC_009045.1 Flavonol reductase/cinnamoyl-CoA reductase; protein induced by osmotic stress 1581627 GRP3.1 4839090 GRP3.1 Pichia stipitis CBS 6054 protein induced by osmotic stress XP_001384998.1 1580623 D 322104 CDS PICST_32464 150865900 4839219 complement(join(1581874..1585485,1585654..1585656)) 1 NC_009045.1 hypothetical protein 1585656 4839219 PICST_32464 Pichia stipitis CBS 6054 hypothetical protein XP_001385302.2 1581874 R 322104 CDS PICST_46564 126136951 4839091 1587815..1588717 1 NC_009045.1 go_function: oxidoreductase activity; go_process: electron transport; aromatic compound metabolism; predicted protein 1588717 4839091 PICST_46564 Pichia stipitis CBS 6054 predicted protein XP_001384999.1 1587815 D 322104 CDS PICST_65836 126137559 4839220 complement(1589213..1589491) 1 NC_009045.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2; NADH dehydrogenase (ubiquinone) 1 alpha 1589491 NUO10 4839220 NUO10 Pichia stipitis CBS 6054 NADH dehydrogenase (ubiquinone) 1 alpha XP_001385303.1 1589213 R 322104 CDS PICST_32467 126137561 4839092 complement(1589974..1590429) 1 NC_009045.1 predicted protein 1590429 4839092 PICST_32467 Pichia stipitis CBS 6054 predicted protein XP_001385304.1 1589974 R 322104 CDS PICST_32468 150865679 4839093 1591740..1593644 1 NC_009045.1 predicted protein 1593644 4839093 PICST_32468 Pichia stipitis CBS 6054 predicted protein XP_001385000.2 1591740 D 322104 CDS PICST_78306 150865901 4839284 complement(1593936..1595108) 1 NC_009045.1 probable inositol 2-dehydrogenase; go_function: oxidoreductase activity; go_process: electron transport; metabolism; oxidoreductase 1595108 4839284 PICST_78306 Pichia stipitis CBS 6054 oxidoreductase XP_001385305.2 1593936 R 322104 CDS PICST_21178 150865680 4839094 join(1596282..1596636,1596922..1597172,1597266..>1597442) 1 NC_009045.1 predicted protein 1597172 4839094 PICST_21178 Pichia stipitis CBS 6054 predicted protein XP_001385001.2 1596282 D 322104 CDS PICST_46357 126136957 4839285 1597815..1598738 1 NC_009045.1 predicted protein 1598738 4839285 PICST_46357 Pichia stipitis CBS 6054 predicted protein XP_001385002.1 1597815 D 322104 CDS PICST_60418 150865902 4839286 complement(join(1598799..1599589,1599644..1599937,1599974..1600910,1600968..1601147)) 1 NC_009045.1 go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent RNA helicase DBP7 (DEAD-box protein 7) 1601147 DPB7 4839286 DPB7 Pichia stipitis CBS 6054 ATP-dependent RNA helicase DBP7 (DEAD-box protein 7) XP_001385306.2 1598799 R 322104 CDS PICST_32473 126137567 4839259 complement(1601428..1602258) 1 NC_009045.1 predicted protein 1602258 4839259 PICST_32473 Pichia stipitis CBS 6054 predicted protein XP_001385307.1 1601428 R 322104 CDS PICST_61090 150865681 4839260 1602565..1603500 1 NC_009045.1 go_component: eukaryotic translation initiation factor 2B complex; go_function: translation initiation factor activity; GTP binding; go_process: translational initiation; translation initiation factor eIF-2B alpha subunit (GCN3) 1603500 GCN3 4839260 GCN3 Pichia stipitis CBS 6054 translation initiation factor eIF-2B alpha subunit (GCN3) XP_001385003.2 1602565 D 322104 CDS PICST_60952 150865903 4839287 complement(1603648..1605114) 1 NC_009045.1 conserved hypothetical protein 1605114 YNB1 4839287 YNB1 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385308.2 1603648 R 322104 CDS PICST_46672 126136961 4839261 join(1605754..1606281,1606486..1606911) 1 NC_009045.1 interacts with the translational machinery; WD repeat protein 1606911 ASC1 4839261 ASC1 Pichia stipitis CBS 6054 WD repeat protein XP_001385004.1 1605754 D 322104 CDS PICST_83842 150865904 4839288 complement(join(1607061..1607359,1607453..1608445,1608551..1608803)) 1 NC_009045.1 conerved hypothetical protein with WD repeats 1608803 PRW1 4839288 PRW1 Pichia stipitis CBS 6054 conerved hypothetical protein with WD repeats XP_001385309.2 1607061 R 322104 CDS PICST_47181 150865905 4839262 complement(1609109..1610425) 1 NC_009045.1 Folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase); go_function: ATP binding; ligase activity; go_process: biosynthesis; folylpolyglutamate synthase 1610425 FOL3 4839262 FOL3 Pichia stipitis CBS 6054 folylpolyglutamate synthase XP_001385310.2 1609109 R 322104 CDS PICST_32479 150865682 4839263 1610907..1611617 1 NC_009045.1 predicted protein 1611617 4839263 PICST_32479 Pichia stipitis CBS 6054 predicted protein XP_001385005.2 1610907 D 322104 CDS PICST_47082 150865906 4839162 complement(join(1611792..1612060,1612139..1612466)) 1 NC_009045.1 go_function: molecular function unknown; predicted protein 1612466 4839162 PICST_47082 Pichia stipitis CBS 6054 predicted protein XP_001385311.2 1611792 R 322104 CDS PICST_59919 150865683 4839264 join(1613777..1614117,1614172..>1615408) 1 NC_009045.1 ethanolamine kinase 1614117 EKI1 4839264 EKI1 Pichia stipitis CBS 6054 ethanolamine kinase XP_001385006.2 1613777 D 322104 CDS PICST_60715 150865907 4839163 complement(join(1615745..1616336,1616355..1619085,1619146..1619651,1619727..1620913)) 1 NC_009045.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1620913 4839163 PICST_60715 Pichia stipitis CBS 6054 predicted protein XP_001385312.2 1615745 R 322104 CDS PICST_32483 150865684 4839265 1621846..1623813 1 NC_009045.1 go_component: nucleus; go_function: hydrolase activity; endonuclease activity; manganese ion binding; go_process: double-strand break repair; predicted protein 1623813 4839265 PICST_32483 Pichia stipitis CBS 6054 predicted protein XP_001385007.2 1621846 D 322104 CDS PICST_47115 150865908 4839164 complement(1623918..>1624718) 1 NC_009045.1 predicted protein >1624718 4839164 PICST_47115 Pichia stipitis CBS 6054 predicted protein XP_001385313.2 1623918 R 322104 CDS PICST_59964 126137581 4839266 complement(1625174..>1625554) 1 NC_009045.1 predicted protein >1625554 4839266 PICST_59964 Pichia stipitis CBS 6054 predicted protein XP_001385314.1 1625174 R 322104 CDS PICST_46059 150865685 4839267 1626362..1627684 1 NC_009045.1 predicted protein 1627684 4839267 PICST_46059 Pichia stipitis CBS 6054 predicted protein XP_001385008.2 1626362 D 322104 CDS PICST_32486 150865686 4839165 1628564..1630375 1 NC_009045.1 predicted protein 1630375 4839165 PICST_32486 Pichia stipitis CBS 6054 predicted protein XP_001385009.2 1628564 D 322104 CDS PICST_61200 150865909 4839166 complement(1630561..1631697) 1 NC_009045.1 go_function: ATP binding; molecular function unknown; predicted protein 1631697 4839166 PICST_61200 Pichia stipitis CBS 6054 predicted protein XP_001385315.2 1630561 R 322104 CDS PICST_32488 150865910 4839268 complement(1632049..1632477) 1 NC_009045.1 similar to YKU7_YEAST function unknown; conserved hypothetical transmembrane protein 1632477 YKU7 4839268 YKU7 Pichia stipitis CBS 6054 conserved hypothetical transmembrane protein XP_001385316.2 1632049 R 322104 CDS PICST_60960 150865687 4839200 1633513..1634013 1 NC_009045.1 20th gene involved in cytochrome oxidase activity; COX: cytochrome oxidase, 20 1634013 COX20 4839200 COX20 Pichia stipitis CBS 6054 COX: cytochrome oxidase, 20 XP_001385010.2 1633513 D 322104 CDS PICST_83848 150865688 4839167 1634669..1637830 1 NC_009045.1 go_function: ATP binding; AAA ATPase, peroxisomal biogenesis 1637830 PEX1 4839167 PEX1 Pichia stipitis CBS 6054 AAA ATPase, peroxisomal biogenesis XP_001385011.2 1634669 D 322104 CDS PICST_67964 126137587 4839168 complement(1637986..1638933) 1 NC_009045.1 diacylglycerol pyrophosphate phosphatase 1638933 DPP1 4839168 DPP1 Pichia stipitis CBS 6054 diacylglycerol pyrophosphate phosphatase XP_001385317.1 1637986 R 322104 CDS PICST_60041 150865689 4839201 join(<1644902..1645456,1645511..1647754) 1 NC_009045.1 go_function: protein tyrosine/serine/threonine phosphatase activity; go_process: protein amino acid dephosphorylation; Protein Phosphatase S phase 1647754 PPS1 4839201 PPS1 Pichia stipitis CBS 6054 Protein Phosphatase S phase XP_001385012.2 <1644902 D 322104 CDS PICST_72583 150865911 4839169 complement(1650776..1651885) 1 NC_009045.1 Replication factor C, subunit RFC4 RFC is a DNA binding protein and ATPase that acts as a processivity factor for DNA polymerases delta and epsilon and loads proliferating cell nuclear antigen (PCNA) on DNA; go_function: ATP binding; Replication factor C, subunit RFC4 1651885 RCF2 4839169 RCF2 Pichia stipitis CBS 6054 Replication factor C, subunit RFC4 XP_001385318.2 1650776 R 322104 CDS PICST_32495 150865912 4839202 complement(1652235..1653308) 1 NC_009045.1 predicted protein 1653308 4839202 PICST_32495 Pichia stipitis CBS 6054 predicted protein XP_001385319.2 1652235 R 322104 CDS PICST_32496 150865690 4839203 1654381..1654812 1 NC_009045.1 predicted protein 1654812 4839203 PICST_32496 Pichia stipitis CBS 6054 predicted protein XP_001385013.2 1654381 D 322104 CDS PICST_60431 150865913 4839170 complement(1654972..>1655718) 1 NC_009045.1 predicted protein >1655718 4839170 PICST_60431 Pichia stipitis CBS 6054 predicted protein XP_001385320.2 1654972 R 322104 CDS PICST_45999 150865914 4839204 complement(join(1659596..1659942,1659979..1661767)) 1 NC_009045.1 predicted protein 1661767 4839204 PICST_45999 Pichia stipitis CBS 6054 predicted protein XP_001385321.2 1659596 R 322104 CDS PICST_47316 126136981 4839205 1664412..>1665584 1 NC_009045.1 predicted protein >1665584 4839205 PICST_47316 Pichia stipitis CBS 6054 predicted protein XP_001385014.1 1664412 D 322104 CDS PICST_32500 126137597 4839171 complement(join(1666219..1666471,1666537..1666556)) 1 NC_009045.1 predicted protein 1666556 4839171 PICST_32500 Pichia stipitis CBS 6054 predicted protein XP_001385322.1 1666219 R 322104 CDS PICST_60468 126137599 4839206 complement(join(1666896..1667312,1667358..1668632)) 1 NC_009045.1 small nucleolar RNA-associated protein 18 (U3 snoRNA-associated protein 18); U3 snoRNA associated protein 1668632 UTP13 4839206 UTP13 Pichia stipitis CBS 6054 U3 snoRNA associated protein XP_001385323.1 1666896 R 322104 CDS PICST_89506 150865915 4839207 complement(1669887..1672865) 1 NC_009045.1 go_component: nucleus; cytoplasm; go_function: tRNA binding; go_process: tRNA-nucleus export; predicted protein 1672865 4839207 PICST_89506 Pichia stipitis CBS 6054 predicted protein XP_001385324.2 1669887 R 322104 CDS PICST_59891 150865916 4839208 complement(1673997..1675100) 1 NC_009045.1 Cysteine synthase 2 (O-acetylserine sulfhydrylase 2) (O-acetylserine (Thiol)-lyase 2) (CSase 2); go_function: lyase activity; go_process: amino acid metabolism; cysteine synthase (CYSK1) 1675100 CYK1 4839208 CYK1 Pichia stipitis CBS 6054 cysteine synthase (CYSK1) XP_001385325.2 1673997 R 322104 CDS PICST_32504 150865691 4839209 1681560..1682336 1 NC_009045.1 Similar to ScNRG1, which is involved in regulation of glucose repression in that organism; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; transcriptional repressor 1682336 NRG1 4839209 NRG1 Pichia stipitis CBS 6054 transcriptional repressor XP_001385015.2 1681560 D 322104 CDS PICST_32505 150865917 4839383 complement(join(1687447..1688723,1688748..1689318)) 1 NC_009045.1 predicted protein 1689318 4839383 PICST_32505 Pichia stipitis CBS 6054 predicted protein XP_001385326.2 1687447 R 322104 CDS PICST_60976 150865918 4839307 complement(join(1693168..1693438,1693486..1693525,1693539..1695063)) 1 NC_009045.1 go_component: integral to membrane; GPI-anchor transamidase complex; predicted protein 1695063 4839307 PICST_60976 Pichia stipitis CBS 6054 predicted protein XP_001385327.2 1693168 R 322104 CDS PICST_78070 150865919 4839308 complement(1695437..1697629) 1 NC_009045.1 Threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase) (ThrRS); go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; protein biosynthesis; threonyl-tRNA synthetase 1697629 THS1 4839308 THS1 Pichia stipitis CBS 6054 threonyl-tRNA synthetase XP_001385328.2 1695437 R 322104 CDS PICST_89472 126137611 4839309 complement(1698773..1699171) 1 NC_009045.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1699171 4839309 PICST_89472 Pichia stipitis CBS 6054 predicted protein XP_001385329.1 1698773 R 322104 CDS PICST_60871 150865692 4839310 join(<1699701..1699894,1699928..1700189) 1 NC_009045.1 go_function: molecular function unknown; predicted protein 1700189 4839310 PICST_60871 Pichia stipitis CBS 6054 predicted protein XP_001385016.2 <1699701 D 322104 CDS PICST_46773 150865920 4839384 complement(1701064..1701819) 1 NC_009045.1 conserved hypothetical membrane protein 1701819 CHM1 4839384 CHM1 Pichia stipitis CBS 6054 conserved hypothetical membrane protein XP_001385330.2 1701064 R 322104 CDS PICST_60443 126137615 4839311 complement(join(1702557..1702677,1702714..1703410,1703477..>1703711)) 1 NC_009045.1 predicted protein 1703410 4839311 PICST_60443 Pichia stipitis CBS 6054 predicted protein XP_001385331.1 1702557 R 322104 CDS PICST_60980 150865921 4839312 complement(<1704524..>1706101) 1 NC_009045.1 multidrug-resistance transporter >1706101 MDR6 4839312 MDR6 Pichia stipitis CBS 6054 multidrug-resistance transporter XP_001385332.2 <1704524 R 322104 CDS PICST_89517 150865922 4839313 complement(1706599..1707390) 1 NC_009045.1 predicted protein 1707390 4839313 PICST_89517 Pichia stipitis CBS 6054 predicted protein XP_001385333.2 1706599 R 322104 CDS PICST_67974 150865693 4839314 1707696..1709330 1 NC_009045.1 Importin alpha subunit (Karyopherin alpha subunit) (Serine-rich RNA polymerase I suppressor protein) (Cell untimely torn protein 15); go_function: protein transporter activity; go_process: protein-nucleus import; intracellular protein transport; Importin alpha subunit (Karyopherin alpha subunit) (Serine-rich RNA polymerase I suppressor protein) 1709330 SRP1 4839314 SRP1 Pichia stipitis CBS 6054 Importin alpha subunit (Karyopherin alpha subunit) (Serine-rich RNA polymerase I suppressor protein) XP_001385017.2 1707696 D 322104 CDS PICST_67975 126136989 4839385 1710746..1711378 1 NC_009045.1 predicted protein 1711378 4839385 PICST_67975 Pichia stipitis CBS 6054 predicted protein XP_001385018.1 1710746 D 322104 CDS PICST_32515 126137621 4839386 complement(1711884..1713206) 1 NC_009045.1 agmatine ureohydrolase (agmatinase) (SPEB2); go_function: catalytic activity; agmatine ureohydrolase (agmatinase) 1713206 SPB2 4839386 SPB2 Pichia stipitis CBS 6054 agmatine ureohydrolase (agmatinase) XP_001385334.1 1711884 R 322104 CDS PICST_60116 150865694 4839315 1713907..1716174 1 NC_009045.1 involved in actin polymerization; endo-1,3-beta- glucanase 1716174 ACF2 4839315 ACF2 Pichia stipitis CBS 6054 endo-1,3-beta- glucanase XP_001385019.2 1713907 D 322104 CDS PICST_32517 150865923 4839387 complement(1718090..1719943) 1 NC_009045.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1719943 4839387 PICST_32517 Pichia stipitis CBS 6054 predicted protein XP_001385335.2 1718090 R 322104 CDS PICST_60552 150865695 4839316 <1720360..1721937 1 NC_009045.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; Azole resistance protein 1 1721937 AZR3 4839316 AZR3 Pichia stipitis CBS 6054 Azole resistance protein 1 XP_001385020.2 <1720360 D 322104 CDS PICST_27661 150865696 4839388 <1723628..>1724086 1 NC_009045.1 predicted protein >1724086 4839388 PICST_27661 Pichia stipitis CBS 6054 predicted protein XP_001385021.2 <1723628 D 322104 CDS PICST_32520 150866181 4840130 complement(join(1198..1250,1952..3875)) 1 NC_009046.1 go_component: membrane; go_function: transporter activity; go_process: transport; Urea active transport protein 3875 DUR3.2 4840130 DUR3.2 Pichia stipitis CBS 6054 Urea active transport protein XP_001385686.2 1198 R 322104 CDS PICST_47832 150865924 4839763 4350..5975 1 NC_009046.1 go_function: amidase activity; Acetamidase 5975 AMD2 4839763 AMD2 Pichia stipitis CBS 6054 Acetamidase XP_001385336.2 4350 D 322104 CDS PICST_36494 150866182 4840114 complement(join(6080..6235,6308..7855,7907..8092)) 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 8092 4840114 PICST_36494 Pichia stipitis CBS 6054 predicted protein XP_001385687.2 6080 R 322104 CDS PICST_84561 126137628 4839764 join(11203..11384,11406..13038) 1 NC_009046.1 related to MDR family transporters (MDR15); Synaptic vesicle transporter SVOP 13038 NAG4 4839764 NAG4 Pichia stipitis CBS 6054 Synaptic vesicle transporter SVOP XP_001385337.1 11203 D 322104 CDS PICST_48829 150866183 4840115 complement(13338..14600) 1 NC_009046.1 go_function: hydrolase activity; N-acetyl-glucosamine-6-phosphate deacetylase 14600 NAG2 4840115 NAG2 Pichia stipitis CBS 6054 N-acetyl-glucosamine-6-phosphate deacetylase XP_001385688.2 13338 R 322104 CDS PICST_62706 150865925 4839765 15375..16133 1 NC_009046.1 go_process: carbohydrate metabolism; Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) 16133 NAG1 4839765 NAG1 Pichia stipitis CBS 6054 Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) XP_001385338.2 15375 D 322104 CDS PICST_32526 150866184 4840116 complement(16507..18159) 1 NC_009046.1 hexokinase I (HXK1); go_function: hexokinase activity; ATP binding; go_process: glycolysis; hexokinase I 18159 NAG5 4840116 NAG5 Pichia stipitis CBS 6054 hexokinase I XP_001385689.2 16507 R 322104 CDS PICST_84922 150866185 4839766 complement(19899..22382) 1 NC_009046.1 predicted protein 22382 4839766 PICST_84922 Pichia stipitis CBS 6054 predicted protein XP_001385690.2 19899 R 322104 CDS PICST_32528 126138336 4839767 complement(23043..24041) 1 NC_009046.1 electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) (Yong-Su Jin[2006-01-06 11:32:10]); go_function: electron transporter activity; go_process: electron transport; Electron transfer flavoprotein alpha-subunit 24041 ETF1 4839767 ETF1 Pichia stipitis CBS 6054 Electron transfer flavoprotein alpha-subunit XP_001385691.1 23043 R 322104 CDS PICST_3849 150865926 4839768 join(<26659..26874,26977..>28221) 1 NC_009046.1 Fungal specific transcription factor; possible sucrose or maltose fermentation regulatory protein (MAL33); go_function: DNA binding; Probable sucrose utilization protein 26874 SUC1.4 4839768 SUC1.4 Pichia stipitis CBS 6054 Probable sucrose utilization protein XP_001385339.2 <26659 D 322104 CDS PICST_32530 150866186 4840087 complement(28472..30943) 1 NC_009046.1 Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 Carbohydrate transport and metabolism; go_function: hydrolase activity, acting on glycosyl bonds; hydrolase activity, hydrolyzing O-glycosyl compounds; alpha-glucosidase activity; Alpha-glucosidase II; Alpha-xylosidase 30943 YIC1 4840087 YIC1 Pichia stipitis CBS 6054 Alpha-glucosidase II; Alpha-xylosidase XP_001385692.2 28472 R 322104 CDS PICST_32531 150865927 4839769 31705..33234 1 NC_009046.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; maltose permease 33234 MAL5 4839769 MAL5 Pichia stipitis CBS 6054 maltose permease XP_001385340.2 31705 D 322104 CDS PICST_47584 126138340 4840088 complement(34361..36106) 1 NC_009046.1 maltose permease slight similarity to Candida intermedia GXS1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; maltose permease 36106 MAL3 4840088 MAL3 Pichia stipitis CBS 6054 maltose permease XP_001385693.1 34361 R 322104 CDS PICST_62666 126137636 4839770 37412..39130 1 NC_009046.1 alpha-glucosidase maltase (MAL2) [EC:3.2.1.20] [KO:K01187]; go_function: alpha-amylase activity; go_process: carbohydrate metabolism; alpha-glucosidase maltase 39130 AGL1 4839770 AGL1 Pichia stipitis CBS 6054 alpha-glucosidase maltase XP_001385341.1 37412 D 322104 CDS PICST_62249 150866187 4839736 complement(join(<41455..42683,42786..>43002)) 1 NC_009046.1 Fungal transcriptional regulatory protein (MAL33) (MAL63); go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal transcriptional regulatory protein 42683 SUC1.2 4839736 SUC1.2 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001385694.2 <41455 R 322104 CDS PICST_32535 150865928 4839771 join(45623..45761,45798..47485,47552..48268) 1 NC_009046.1 Putative sulfate transporter 48268 SUL4 4839771 SUL4 Pichia stipitis CBS 6054 Putative sulfate transporter XP_001385342.2 45623 D 322104 CDS PICST_61538 126137640 4839737 48690..49883 1 NC_009046.1 histone acetyltransferase type B subunit 2; histone acetyltransferase subunit 49883 HAT2 4839737 HAT2 Pichia stipitis CBS 6054 histone acetyltransferase subunit XP_001385343.1 48690 D 322104 CDS PICST_32538 126138344 4839738 complement(51795..52745) 1 NC_009046.1 aldose reductase (PKR3); aldose reductase 52745 AKR3 4839738 AKR3 Pichia stipitis CBS 6054 aldose reductase XP_001385695.1 51795 R 322104 CDS PICST_48294 150866188 4839772 complement(53227..54198) 1 NC_009046.1 Aldo/keto reductase (PKR2); Aldo/keto reductase 54198 AKR5 4839772 AKR5 Pichia stipitis CBS 6054 Aldo/keto reductase XP_001385696.2 53227 R 322104 CDS PICST_90444 150866189 4839773 complement(54735..56099) 1 NC_009046.1 Regulates vesicle traffic in secretory pathway by regulating dissociation of GDP from Sec4/Ypt/rab family of GTP-binding proteins; go_process: regulation of GTPase activity; Secretory pathway GDP dissociation inhibitor 56099 GDI1 4839773 GDI1 Pichia stipitis CBS 6054 Secretory pathway GDP dissociation inhibitor XP_001385697.2 54735 R 322104 CDS PICST_62767 150866190 4839886 complement(56712..58139) 1 NC_009046.1 go_function: metalloexopeptidase activity; peptidase activity; go_process: proteolysis and peptidolysis; X-Pro dipeptidase 58139 4839886 PICST_62767 Pichia stipitis CBS 6054 X-Pro dipeptidase XP_001385698.2 56712 R 322104 CDS PICST_32542 150865929 4839887 58544..59482 1 NC_009046.1 26S proteasome regulatory subunit RPN11; multicatalytic endopeptidase 59482 RPN11 4839887 RPN11 Pichia stipitis CBS 6054 multicatalytic endopeptidase XP_001385344.2 58544 D 322104 CDS PICST_61453 150865930 4839739 59777..61246 1 NC_009046.1 cysteine-type endopeptidase activity; go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; ubiquitin specific protease 61246 USP39 4839739 USP39 Pichia stipitis CBS 6054 ubiquitin specific protease XP_001385345.2 59777 D 322104 CDS PICST_32544 150866191 4839740 complement(join(61492..61514,61556..62252)) 1 NC_009046.1 predicted protein 62252 4839740 PICST_32544 Pichia stipitis CBS 6054 predicted protein XP_001385699.2 61492 R 322104 CDS PICST_62543 150866192 4839888 complement(62736..63422) 1 NC_009046.1 aries arylalkylamine N-acetyltransferase (SNAT); go_function: N-acetyltransferase activity; aries arylalkylamine N-acetyltransferase 63422 SNA1 4839888 SNA1 Pichia stipitis CBS 6054 aries arylalkylamine N-acetyltransferase XP_001385700.2 62736 R 322104 CDS PICST_23784 126138356 4839889 complement(<64304..>64522) 1 NC_009046.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein >64522 4839889 PICST_23784 Pichia stipitis CBS 6054 predicted protein XP_001385701.1 <64304 R 322104 CDS PICST_32546 150866193 4839890 complement(64842..67091) 1 NC_009046.1 go_function: two-component response regulator activity; DNA binding; go_process: two-component signal transduction system (phosphorelay); regulation of transcription, DNA-dependent; predicted protein 67091 4839890 PICST_32546 Pichia stipitis CBS 6054 predicted protein XP_001385702.2 64842 R 322104 CDS PICST_47663 150866194 4839891 complement(67809..68828) 1 NC_009046.1 predicted protein 68828 4839891 PICST_47663 Pichia stipitis CBS 6054 predicted protein XP_001385703.2 67809 R 322104 CDS PICST_49011 150865931 4839892 69396..71021 1 NC_009046.1 go_component: membrane; go_function: ATP binding; go_process: transport; predicted protein 71021 4839892 PICST_49011 Pichia stipitis CBS 6054 predicted protein XP_001385346.2 69396 D 322104 CDS PICST_84331 126137648 4839741 72020..73720 1 NC_009046.1 go_function: transaminase activity; go_process: biosynthesis; palmitoyl transferase 73720 LCB2 4839741 LCB2 Pichia stipitis CBS 6054 palmitoyl transferase XP_001385347.1 72020 D 322104 CDS PICST_61589 126137650 4839742 74021..74668 1 NC_009046.1 predicted protein 74668 4839742 PICST_61589 Pichia stipitis CBS 6054 predicted protein XP_001385348.1 74021 D 322104 CDS PICST_62413 150866195 4839743 complement(join(74694..76293,76381..76942,77000..77384)) 1 NC_009046.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 77384 4839743 PICST_62413 Pichia stipitis CBS 6054 predicted protein XP_001385704.2 74694 R 322104 CDS PICST_61452 150866196 4839893 complement(77768..79288) 1 NC_009046.1 glucan 1,3-beta-glucosidase 79288 EXG3 4839893 EXG3 Pichia stipitis CBS 6054 glucan 1,3-beta-glucosidase XP_001385705.2 77768 R 322104 CDS PICST_62134 150865932 4839894 79942..>83475 1 NC_009046.1 go_function: nucleic acid binding; helicase activity; ATP binding; predicted protein >83475 4839894 PICST_62134 Pichia stipitis CBS 6054 predicted protein XP_001385349.2 79942 D 322104 CDS PICST_84899 150866197 4839744 complement(83645..85738) 1 NC_009046.1 predicted protein 85738 4839744 PICST_84899 Pichia stipitis CBS 6054 predicted protein XP_001385706.2 83645 R 322104 CDS PICST_36516 150866198 4839895 complement(86124..87161) 1 NC_009046.1 predicted protein 87161 4839895 PICST_36516 Pichia stipitis CBS 6054 predicted protein XP_001385707.2 86124 R 322104 CDS PICST_48488 126138370 4839896 complement(88151..88552) 1 NC_009046.1 predicted protein 88552 4839896 PICST_48488 Pichia stipitis CBS 6054 predicted protein XP_001385708.1 88151 R 322104 CDS PICST_62189 150866199 4839897 complement(join(89131..89954,90018..>90264)) 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 89954 4839897 PICST_62189 Pichia stipitis CBS 6054 predicted protein XP_001385709.2 89131 R 322104 CDS PICST_90468 150866200 4839898 complement(91853..93424) 1 NC_009046.1 predicted protein 93424 4839898 PICST_90468 Pichia stipitis CBS 6054 predicted protein XP_001385710.2 91853 R 322104 CDS PICST_32560 150866201 4839872 complement(94711..96249) 1 NC_009046.1 Monocarboxylate transporter 96249 MCH2.1 4839872 MCH2.1 Pichia stipitis CBS 6054 Monocarboxylate transporter XP_001385711.2 94711 R 322104 CDS PICST_67982 150865933 4839873 97690..100227 1 NC_009046.1 go_function: GTP binding; translation elongation factor activity; go_process: protein biosynthesis; translational elongation; mitochondrial elongation factor G- like protein 100227 MEF2 4839873 MEF2 Pichia stipitis CBS 6054 mitochondrial elongation factor G- like protein XP_001385350.2 97690 D 322104 CDS PICST_32562 150865934 4839745 100574..101458 1 NC_009046.1 predicted protein 101458 4839745 PICST_32562 Pichia stipitis CBS 6054 predicted protein XP_001385351.2 100574 D 322104 CDS PICST_32563 150866202 4839746 complement(101707..104892) 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; transcription activator involved in proline utilization potential fungal Zn(2)-Cys(6) binuclear cluster domain 104892 PUT3 4839746 PUT3 Pichia stipitis CBS 6054 transcription activator involved in proline utilization potential fungal Zn(2)-Cys(6) binuclear cluster domain XP_001385712.2 101707 R 322104 CDS PICST_32564 150865935 4839874 105795..107873 1 NC_009046.1 predicted protein 107873 4839874 PICST_32564 Pichia stipitis CBS 6054 predicted protein XP_001385352.2 105795 D 322104 CDS PICST_79035 150866203 4839747 complement(108104..108850) 1 NC_009046.1 go_component: extracellular region; predicted protein 108850 4839747 PICST_79035 Pichia stipitis CBS 6054 predicted protein XP_001385713.2 108104 R 322104 CDS PICST_61353 150866204 4839875 complement(join(110683..110978,110997..111996,112066..112644,112699..112974)) 1 NC_009046.1 predicted protein 112974 4839875 PICST_61353 Pichia stipitis CBS 6054 predicted protein XP_001385714.2 110683 R 322104 CDS PICST_48525 126138384 4839876 complement(113543..>113845) 1 NC_009046.1 predicted protein >113845 4839876 PICST_48525 Pichia stipitis CBS 6054 predicted protein XP_001385715.1 113543 R 322104 CDS PICST_32567 150866205 4839877 complement(114081..119129) 1 NC_009046.1 predicted protein 119129 4839877 PICST_32567 Pichia stipitis CBS 6054 predicted protein XP_001385716.2 114081 R 322104 CDS PICST_16565 150865936 4839878 join(<121896..122874,122908..123417,123508..>123662) 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 123417 4839878 PICST_16565 Pichia stipitis CBS 6054 predicted protein XP_001385353.2 <121896 D 322104 CDS PICST_48859 126138388 4839748 complement(124121..>124525) 1 NC_009046.1 go_function: electron transporter activity; go_process: electron transport; predicted protein >124525 4839748 PICST_48859 Pichia stipitis CBS 6054 predicted protein XP_001385717.1 124121 R 322104 CDS PICST_48210 126137662 4839879 <125572..125886 1 NC_009046.1 predicted protein 125886 4839879 PICST_48210 Pichia stipitis CBS 6054 predicted protein XP_001385354.1 <125572 D 322104 CDS PICST_32571 150866206 4840102 complement(join(125939..127723,127829..129805)) 1 NC_009046.1 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily; go_component: membrane; go_function: ATP binding; go_process: transport; ABC transporter family protein 129805 CDR6 4840102 CDR6 Pichia stipitis CBS 6054 ABC transporter family protein XP_001385718.2 125939 R 322104 CDS PICST_61648 150866207 4839880 complement(130408..>131724) 1 NC_009046.1 predicted protein >131724 4839880 PICST_61648 Pichia stipitis CBS 6054 predicted protein XP_001385719.2 130408 R 322104 CDS PICST_79036 126138394 4839881 complement(134267..134794) 1 NC_009046.1 ATP synthase d subunit 134794 ATP7 4839881 ATP7 Pichia stipitis CBS 6054 ATP synthase d subunit XP_001385720.1 134267 R 322104 CDS PICST_32574 150865937 4839882 135370..138315 1 NC_009046.1 predicted protein 138315 4839882 PICST_32574 Pichia stipitis CBS 6054 predicted protein XP_001385355.2 135370 D 322104 CDS PICST_47641 126137666 4840103 <139910..140335 1 NC_009046.1 go_component: extracellular region; predicted protein 140335 4840103 PICST_47641 Pichia stipitis CBS 6054 predicted protein XP_001385356.1 <139910 D 322104 CDS PICST_61490 150865938 4840104 join(140595..140930,140955..141896) 1 NC_009046.1 involved in riboflavin synthesis; go_function: RNA binding; pseudouridine synthase activity; go_process: RNA processing; DRAP deaminase and pseudouridylate synthase 141896 RIB6 4840104 RIB6 Pichia stipitis CBS 6054 DRAP deaminase and pseudouridylate synthase XP_001385357.2 140595 D 322104 CDS PICST_21007 150866208 4840105 complement(<142039..>142587) 1 NC_009046.1 predicted protein >142587 4840105 PICST_21007 Pichia stipitis CBS 6054 predicted protein XP_001385721.2 <142039 R 322104 CDS PICST_62019 150866209 4839883 complement(142973..144076) 1 NC_009046.1 go_function: copper ion binding; member of Set1p complex, histone methyl transferase 144076 SWD2 4839883 SWD2 Pichia stipitis CBS 6054 member of Set1p complex, histone methyl transferase XP_001385722.2 142973 R 322104 CDS PICST_62444 150865939 4839884 join(<147010..147243,147268..147729) 1 NC_009046.1 predicted protein 147729 4839884 PICST_62444 Pichia stipitis CBS 6054 predicted protein XP_001385358.2 <147010 D 322104 CDS PICST_72886 150865940 4840106 150108..152771 1 NC_009046.1 predicted protein 152771 4840106 PICST_72886 Pichia stipitis CBS 6054 predicted protein XP_001385359.2 150108 D 322104 CDS PICST_48387 126138400 4840107 complement(152982..153734) 1 NC_009046.1 go_function: alanine racemase activity; pyridoxal phosphate binding; predicted protein 153734 4840107 PICST_48387 Pichia stipitis CBS 6054 predicted protein XP_001385723.1 152982 R 322104 CDS PICST_78927 150865941 4839885 154428..155348 1 NC_009046.1 predicted protein 155348 4839885 PICST_78927 Pichia stipitis CBS 6054 predicted protein XP_001385360.2 154428 D 322104 CDS PICST_90280 150865942 4840108 156192..158249 1 NC_009046.1 DNA polymerase alpha-primase complex B subunit Required for DNA synthesis and correct progression through S phase plays an essential role at early stage of chromosomal DNA replication, before the hydroxyurea-sensitive step; go_component: nucleus; go_process: DNA replication; DNA polymerase alpha-primase complex B subunit 158249 POL12 4840108 POL12 Pichia stipitis CBS 6054 DNA polymerase alpha-primase complex B subunit XP_001385361.2 156192 D 322104 CDS PICST_48142 150865943 4840109 159766..>160956 1 NC_009046.1 go_function: hydrolase activity; go_process: metabolism; chitinase 2 precursor >160956 CHT2 4840109 CHT2 Pichia stipitis CBS 6054 chitinase 2 precursor XP_001385362.2 159766 D 322104 CDS PICST_90137 126137680 4840110 162155..163309 1 NC_009046.1 go_function: legumain activity; cysteine-type endopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 163309 4840110 PICST_90137 Pichia stipitis CBS 6054 predicted protein XP_001385363.1 162155 D 322104 CDS PICST_78610 150865944 4840111 join(163739..164504,164685..165641,165690..166862,167106..168106) 1 NC_009046.1 predicted protein 168106 4840111 PICST_78610 Pichia stipitis CBS 6054 predicted protein XP_001385364.2 163739 D 322104 CDS PICST_84653 150866210 4840112 complement(168264..170033) 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; predicted protein 170033 4840112 PICST_84653 Pichia stipitis CBS 6054 predicted protein XP_001385724.2 168264 R 322104 CDS PICST_32587 150865945 4839991 171315..172454 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; GATA-family of DNA binding protein-like protein 172454 GAT2.1 4839991 GAT2.1 Pichia stipitis CBS 6054 GATA-family of DNA binding protein-like protein XP_001385365.2 171315 D 322104 CDS PICST_90237 150866211 4840113 complement(172529..174979) 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine protein kinase 174979 KSP2 4840113 KSP2 Pichia stipitis CBS 6054 serine/threonine protein kinase XP_001385725.2 172529 R 322104 CDS PICST_84628 150865946 4839992 join(176762..177222,177283..178327) 1 NC_009046.1 predicted protein 178327 4839992 PICST_84628 Pichia stipitis CBS 6054 predicted protein XP_001385366.2 176762 D 322104 CDS PICST_48789 150866212 4840131 complement(<178779..179921) 1 NC_009046.1 predicted protein 179921 4840131 PICST_48789 Pichia stipitis CBS 6054 predicted protein XP_001385726.2 <178779 R 322104 CDS PICST_32591 126138408 4839993 complement(180765..181259) 1 NC_009046.1 predicted protein 181259 4839993 PICST_32591 Pichia stipitis CBS 6054 predicted protein XP_001385727.1 180765 R 322104 CDS PICST_84357 150866213 4839994 complement(join(181823..181916,181962..182112,182170..183235)) 1 NC_009046.1 Peroxisomal biogenesis factor 3 (Peroxin-3) (Peroxisomal membrane protein PAS2); go_component: integral to peroxisomal membrane; go_process: peroxisome organization and biogenesis; Peroxisomal biogenesis factor 3 (Peroxin-3) 183235 PEX3 4839994 PEX3 Pichia stipitis CBS 6054 Peroxisomal biogenesis factor 3 (Peroxin-3) XP_001385728.2 181823 R 322104 CDS PICST_32593 126137688 4839995 185023..186012 1 NC_009046.1 acid phosphatase 186012 PHO3 4839995 PHO3 Pichia stipitis CBS 6054 acid phosphatase XP_001385367.1 185023 D 322104 CDS PICST_47650 126137690 4840132 188667..189653 1 NC_009046.1 acid phosphatase 189653 PHO3.2 4840132 PHO3.2 Pichia stipitis CBS 6054 acid phosphatase XP_001385368.1 188667 D 322104 CDS PICST_48545 150865947 4840133 join(<191228..191345,191394..191660,191724..191904,191974..193975) 1 NC_009046.1 conserved hypothetical protein 193975 4840133 PICST_48545 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385369.2 <191228 D 322104 CDS PICST_32596 150865948 4840134 194855..195985 1 NC_009046.1 predicted protein 195985 4840134 PICST_32596 Pichia stipitis CBS 6054 predicted protein XP_001385370.2 194855 D 322104 CDS PICST_32597 150865949 4840135 197027..197647 1 NC_009046.1 predicted protein 197647 4840135 PICST_32597 Pichia stipitis CBS 6054 predicted protein XP_001385371.2 197027 D 322104 CDS PICST_47968 150865950 4840136 199177..202707 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 202707 4840136 PICST_47968 Pichia stipitis CBS 6054 predicted protein XP_001385372.2 199177 D 322104 CDS PICST_61936 126138412 4840137 complement(join(<203034..203098,203135..203498)) 1 NC_009046.1 predicted protein 203498 4840137 PICST_61936 Pichia stipitis CBS 6054 predicted protein XP_001385729.1 <203034 R 322104 CDS PICST_47649 126137700 4839996 203766..204605 1 NC_009046.1 predicted protein 204605 4839996 PICST_47649 Pichia stipitis CBS 6054 predicted protein XP_001385373.1 203766 D 322104 CDS PICST_47989 150865951 4840138 205831..207153 1 NC_009046.1 go_component: integral to membrane; predicted protein 207153 4840138 PICST_47989 Pichia stipitis CBS 6054 predicted protein XP_001385374.2 205831 D 322104 CDS PICST_62753 126138414 4840139 complement(207436..207618) 1 NC_009046.1 predicted protein 207618 4840139 PICST_62753 Pichia stipitis CBS 6054 predicted protein XP_001385730.1 207436 R 322104 CDS PICST_67997 126137704 4839997 208234..209322 1 NC_009046.1 go_function: RNA binding; ribonuclease III activity; go_process: RNA processing; predicted protein 209322 4839997 PICST_67997 Pichia stipitis CBS 6054 predicted protein XP_001385375.1 208234 D 322104 CDS PICST_78660 126137706 4840140 210137..212524 1 NC_009046.1 go_function: catalytic activity; phosphoribosylamine-glycine ligase activity; go_process: purine base biosynthesis; predicted protein 212524 4840140 PICST_78660 Pichia stipitis CBS 6054 predicted protein XP_001385376.1 210137 D 322104 CDS PICST_62151 150865952 4840141 join(213608..215384,215472..215911) 1 NC_009046.1 go_function: glutamate-cysteine ligase activity; go_process: glutathione biosynthesis; Glutamate--cysteine ligase 215911 GSH1 4840141 GSH1 Pichia stipitis CBS 6054 Glutamate--cysteine ligase XP_001385377.2 213608 D 322104 CDS PICST_67999 150865953 4840142 217124..218695 1 NC_009046.1 possibly involved through regulation of cell wall glucan and chitin synthesis chromatin binding protein; Protein involved in (1,3)-beta-glucan synthesis 218695 SMI1 4840142 SMI1 Pichia stipitis CBS 6054 Protein involved in (1,3)-beta-glucan synthesis XP_001385378.2 217124 D 322104 CDS PICST_22479 126137712 4840143 <219423..>219890 1 NC_009046.1 predicted protein >219890 4840143 PICST_22479 Pichia stipitis CBS 6054 predicted protein XP_001385379.1 <219423 D 322104 CDS PICST_36541 126138416 4840324 complement(220289..221191) 1 NC_009046.1 Biosynthesis of Nicotinic Acid Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase); go_function: nicotinate-nucleotide diphosphorylase (carboxylating) activity; go_process: NAD biosynthesis; Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase) 221191 BNA6 4840324 BNA6 Pichia stipitis CBS 6054 Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase) XP_001385731.1 220289 R 322104 CDS PICST_48237 126137714 4839998 <221505..222269 1 NC_009046.1 Protein involved in establishing cohesion between sister chromatids during DNA replication; N-acetyltransferase ECO1 (Establishment of cohesion protein 1) 222269 ECO1 4839998 ECO1 Pichia stipitis CBS 6054 N-acetyltransferase ECO1 (Establishment of cohesion protein 1) XP_001385380.1 <221505 D 322104 CDS PICST_62279 150866214 4840325 complement(join(222379..223052,223077..223566)) 1 NC_009046.1 Mitochondrial tricarboxylate/dicarboxylate carrier proteins; go_component: membrane; go_function: binding; go_process: transport; Mitochondrial tricarboxylate/dicarboxylate carrier protein 223566 YFL5 4840325 YFL5 Pichia stipitis CBS 6054 Mitochondrial tricarboxylate/dicarboxylate carrier protein XP_001385732.2 222379 R 322104 CDS PICST_32611 150865954 4839999 224019..226130 1 NC_009046.1 hypothetical protein 226130 4839999 PICST_32611 Pichia stipitis CBS 6054 hypothetical protein XP_001385381.2 224019 D 322104 CDS PICST_32612 150866215 4840326 complement(226242..228311) 1 NC_009046.1 Mitochondrial Translation Optimization 228311 MTO1 4840326 MTO1 Pichia stipitis CBS 6054 Mitochondrial Translation Optimization XP_001385733.2 226242 R 322104 CDS PICST_47752 126137718 4840000 228463..229380 1 NC_009046.1 Predicted DEAD-box-containing helicase 229380 4840000 PICST_47752 Pichia stipitis CBS 6054 Predicted DEAD-box-containing helicase XP_001385382.1 228463 D 322104 CDS PICST_68000 150866216 4840327 complement(229434..232160) 1 NC_009046.1 hypothetical protein 232160 4840327 PICST_68000 Pichia stipitis CBS 6054 hypothetical protein XP_001385734.2 229434 R 322104 CDS PICST_32615 150865955 4840001 232641..233549 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; hypothetical protein 233549 4840001 PICST_32615 Pichia stipitis CBS 6054 hypothetical protein XP_001385383.2 232641 D 322104 CDS PICST_61386 150865956 4840328 join(234217..234294,234307..234921) 1 NC_009046.1 CCAAT-binding factor, subunit B (HAP2); go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcriptional activator 234921 HAP2 4840328 HAP2 Pichia stipitis CBS 6054 transcriptional activator XP_001385384.2 234217 D 322104 CDS PICST_32617 150866217 4840329 complement(235086..238049) 1 NC_009046.1 Importin alpha re-exporter (Chromosome segregation protein CSE1) (Cellular apoptosis susceptibility protein homolog) with sequence similarity to CAS specific exportin for Srp1p required for accurate mitotic chromosome segregation; go_component: nucleus; cytoplasm; nuclear pore; go_function: importin-alpha export receptor activity; protein transporter activity; go_process: apoptosis; cell proliferation; protein-nucleus import, docking; CAS specific exportin for Srp1p required for accurate mitotic chromosome segregation 238049 CSE1 4840329 CSE1 Pichia stipitis CBS 6054 CAS specific exportin for Srp1p required for accurate mitotic chromosome segregation XP_001385735.2 235086 R 322104 CDS PICST_48772 126138426 4840002 complement(238705..239688) 1 NC_009046.1 GDP-mannose transporter into the lumen of the Golgi May regulate Golgi function and glycosylation in Golgi; GDP-mannose transporter into the lumen of the Golgi 239688 VRG4 4840002 VRG4 Pichia stipitis CBS 6054 GDP-mannose transporter into the lumen of the Golgi XP_001385736.1 238705 R 322104 CDS PICST_78788 126138428 4840003 complement(241607..243199) 1 NC_009046.1 go_process: nucleoside metabolism; metabolism; amidophosphoribosyltransferase 243199 ADE4 4840003 ADE4 Pichia stipitis CBS 6054 amidophosphoribosyltransferase XP_001385737.1 241607 R 322104 CDS PICST_90571 126138430 4840004 complement(244490..246019) 1 NC_009046.1 ATP-dependent RNA helicase of DEAD box family; go_function: nucleic acid binding; helicase activity; ATP binding; RNA helicase of DEAD box family 246019 DHH1 4840004 DHH1 Pichia stipitis CBS 6054 RNA helicase of DEAD box family XP_001385738.1 244490 R 322104 CDS PICST_62738 126138432 4840117 complement(246943..247197) 1 NC_009046.1 predicted protein 247197 4840117 PICST_62738 Pichia stipitis CBS 6054 predicted protein XP_001385739.1 246943 R 322104 CDS PICST_36549 150865957 4840118 247421..250528 1 NC_009046.1 go_function: GTP binding; translation elongation factor activity; go_process: protein biosynthesis; translational elongation; Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins 250528 RIA1 4840118 RIA1 Pichia stipitis CBS 6054 Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins XP_001385385.2 247421 D 322104 CDS PICST_68004 150865958 4840330 250842..252665 1 NC_009046.1 predicted protein 252665 4840330 PICST_68004 Pichia stipitis CBS 6054 predicted protein XP_001385386.2 250842 D 322104 CDS PICST_32623 150865959 4840331 254003..254419 1 NC_009046.1 predicted protein 254419 4840331 PICST_32623 Pichia stipitis CBS 6054 predicted protein XP_001385387.2 254003 D 322104 CDS PICST_61778 150866218 4840332 complement(254526..256463) 1 NC_009046.1 go_component: intracellular; go_function: exonuclease activity; predicted protein 256463 4840332 PICST_61778 Pichia stipitis CBS 6054 predicted protein XP_001385740.2 254526 R 322104 CDS PICST_32625 150866219 4840119 complement(256893..257783) 1 NC_009046.1 predicted protein 257783 4840119 PICST_32625 Pichia stipitis CBS 6054 predicted protein XP_001385741.2 256893 R 322104 CDS PICST_90675 150865960 4840120 join(258336..260608,260798..261869) 1 NC_009046.1 predicted protein 261869 4840120 PICST_90675 Pichia stipitis CBS 6054 predicted protein XP_001385388.2 258336 D 322104 CDS PICST_78721 150865961 4840333 263322..265115 1 NC_009046.1 go_component: membrane; go_process: transport; amino acid permease 265115 GAP1.6 4840333 GAP1.6 Pichia stipitis CBS 6054 amino acid permease XP_001385389.2 263322 D 322104 CDS PICST_68007 150866220 4840334 complement(join(265953..266714,266805..267390,267469..267683)) 1 NC_009046.1 heme binding fungal transcriptional regulator HBR1; go_function: heme binding; transcription factor activity; zinc finger transcription factor 267683 HBR1 4840334 HBR1 Pichia stipitis CBS 6054 zinc finger transcription factor XP_001385742.2 265953 R 322104 CDS PICST_78790 126137734 4840121 join(271841..272196,272419..273280) 1 NC_009046.1 predicted protein 273280 4840121 PICST_78790 Pichia stipitis CBS 6054 predicted protein XP_001385390.1 271841 D 322104 CDS PICST_32630 150865962 4840335 274767..276587 1 NC_009046.1 predicted protein 276587 4840335 PICST_32630 Pichia stipitis CBS 6054 predicted protein XP_001385391.2 274767 D 322104 CDS PICST_36555 126137738 4840336 276858..277877 1 NC_009046.1 Cinnamyl-alcohol dehydrogenase Flavonol reductase/cinnamoyl-CoA reductase GRE2-related protein; Cinnamyl-alcohol dehydrogenase Flavonol reductase/cinnamoyl-CoA reductase 277877 GRP1 4840336 GRP1 Pichia stipitis CBS 6054 Cinnamyl-alcohol dehydrogenase Flavonol reductase/cinnamoyl-CoA reductase XP_001385392.1 276858 D 322104 CDS PICST_48956 150866221 4840337 complement(<277958..279613) 1 NC_009046.1 Suppressor of Sulfoxyde Ethionine resistance 279613 SEO2 4840337 SEO2 Pichia stipitis CBS 6054 Suppressor of Sulfoxyde Ethionine resistance XP_001385743.2 <277958 R 322104 CDS PICST_36557 150865963 4840122 279889..281094 1 NC_009046.1 predicted protein 281094 4840122 PICST_36557 Pichia stipitis CBS 6054 predicted protein XP_001385393.2 279889 D 322104 CDS PICST_32634 150865964 4840338 281772..283595 1 NC_009046.1 multidrug-resistance transporter; multidrug-resistance transporte 283595 MDR2 4840338 MDR2 Pichia stipitis CBS 6054 multidrug-resistance transporte XP_001385394.2 281772 D 322104 CDS PICST_65867 150865965 4839899 join(284804..286437,289496..289562) 1 NC_009046.1 multidrug-resistance transporte 289562 MDR1 4839899 MDR1 Pichia stipitis CBS 6054 multidrug-resistance transporte XP_001385395.2 284804 D 322104 CDS PICST_68010 150865966 4839900 289732..290478 1 NC_009046.1 predicted protein 290478 4839900 PICST_68010 Pichia stipitis CBS 6054 predicted protein XP_001385396.2 289732 D 322104 CDS PICST_48836 150866222 4839901 complement(290639..292048) 1 NC_009046.1 predicted protein 292048 4839901 PICST_48836 Pichia stipitis CBS 6054 predicted protein XP_001385744.2 290639 R 322104 CDS PICST_32638 150865967 4840123 293451..294263 1 NC_009046.1 predicted protein 294263 4840123 PICST_32638 Pichia stipitis CBS 6054 predicted protein XP_001385397.2 293451 D 322104 CDS PICST_73224 150865968 4839902 294674..295477 1 NC_009046.1 Chorismate mutase; go_function: chorismate mutase activity; go_process: aromatic amino acid family biosynthesis; ARO7 295477 ARO7 4839902 ARO7 Pichia stipitis CBS 6054 ARO7 XP_001385398.2 294674 D 322104 CDS PICST_32640 150865969 4839903 296949..299264 1 NC_009046.1 predicted protein 299264 4839903 PICST_32640 Pichia stipitis CBS 6054 predicted protein XP_001385399.2 296949 D 322104 CDS PICST_90546 126137754 4839904 299780..300526 1 NC_009046.1 go_function: metal ion binding; go_process: metal ion transport; copper chaperone involved in lysine biosynthesis and oxidative stress protection 300526 LYS7 4839904 LYS7 Pichia stipitis CBS 6054 copper chaperone involved in lysine biosynthesis and oxidative stress protection XP_001385400.1 299780 D 322104 CDS PICST_62257 150865970 4839905 join(301481..302420,302589..302664,302698..303382,303413..304125,304210..304360) 1 NC_009046.1 predicted protein 304360 4839905 PICST_62257 Pichia stipitis CBS 6054 predicted protein XP_001385401.2 301481 D 322104 CDS PICST_84609 126137758 4839906 306263..307165 1 NC_009046.1 Carrier protein, mitochondrial precursor; go_component: membrane; go_function: binding; go_process: transport; mitochondrial carrier protein 307165 YMC2 4839906 YMC2 Pichia stipitis CBS 6054 mitochondrial carrier protein XP_001385402.1 306263 D 322104 CDS PICST_47780 150866223 4839907 complement(307381..309132) 1 NC_009046.1 with sequence similarity to S. cerevisiae MEP genes; putative ammonium transporter 309132 MEP3 4839907 MEP3 Pichia stipitis CBS 6054 putative ammonium transporter XP_001385745.2 307381 R 322104 CDS PICST_62092 150866224 4840124 complement(join(309396..309747,309805..>311519)) 1 NC_009046.1 go_function: phospholipase activity; go_process: phospholipid catabolism; phospholipase B 309747 PLB2 4840124 PLB2 Pichia stipitis CBS 6054 phospholipase B XP_001385746.2 309396 R 322104 CDS PICST_90176 126138448 4840125 complement(312115..315261) 1 NC_009046.1 Elongation factor 3A (EF-3A) (EF-3) (Translation elongation factor 3A) (Eukaryotic elongation factor 3) (eEF3) (Yeast elongation factor 3); go_component: membrane; go_function: ATP binding; go_process: transport; translation elongation factor 315261 ETF3 4840125 ETF3 Pichia stipitis CBS 6054 translation elongation factor XP_001385747.1 312115 R 322104 CDS PICST_62196 150865971 4840126 317330..318892 1 NC_009046.1 go_function: catalytic activity; predicted protein 318892 4840126 PICST_62196 Pichia stipitis CBS 6054 predicted protein XP_001385403.2 317330 D 322104 CDS PICST_62830 150866225 4839908 complement(318927..320780) 1 NC_009046.1 involved in the maturation of 25S ribosomal RNA; go_function: nucleic acid binding; helicase activity; ATP binding; ATP dependent RNA helicase 320780 SPB4 4839908 SPB4 Pichia stipitis CBS 6054 ATP dependent RNA helicase XP_001385748.2 318927 R 322104 CDS PICST_84338 150865972 4840127 join(321148..321358,321404..322590) 1 NC_009046.1 tRNA pseudouridine synthase 3 (tRNA-uridine isomerase 3) (tRNA pseudouridylate synthase 3) (Depressed growth-rate protein DEG1); go_function: pseudouridylate synthase activity; go_process: tRNA processing; pseudouridine synthase 322590 DEG1 4840127 DEG1 Pichia stipitis CBS 6054 pseudouridine synthase XP_001385404.2 321148 D 322104 CDS PICST_36569 150866226 4839909 complement(322632..323348) 1 NC_009046.1 involved in glucose derepression; sucrose non-fermenting 323348 SNF8 4839909 SNF8 Pichia stipitis CBS 6054 sucrose non-fermenting XP_001385749.2 322632 R 322104 CDS PICST_49064 150866227 4840128 complement(join(323942..325810,325946..326116)) 1 NC_009046.1 go_component: membrane; go_function: transporter activity; go_process: transport; urea transport protein 326116 DUR5.1 4840128 DUR5.1 Pichia stipitis CBS 6054 urea transport protein XP_001385750.2 323942 R 322104 CDS PICST_36571 150865973 4840129 328853..330814 1 NC_009046.1 predicted protein 330814 4840129 PICST_36571 Pichia stipitis CBS 6054 predicted protein XP_001385405.2 328853 D 322104 CDS PICST_62274 150866228 4839910 complement(330918..331394) 1 NC_009046.1 predicted protein 331394 4839910 PICST_62274 Pichia stipitis CBS 6054 predicted protein XP_001385751.2 330918 R 322104 CDS PICST_36572 150865974 4840298 332261..333685 1 NC_009046.1 predicted protein 333685 4840298 PICST_36572 Pichia stipitis CBS 6054 predicted protein XP_001385406.2 332261 D 322104 CDS PICST_32655 126137768 4839911 333956..334765 1 NC_009046.1 predicted protein 334765 4839911 PICST_32655 Pichia stipitis CBS 6054 predicted protein XP_001385407.1 333956 D 322104 CDS PICST_36574 126137770 4839912 join(335065..335077,335213..335643) 1 NC_009046.1 predicted protein 335643 4839912 PICST_36574 Pichia stipitis CBS 6054 predicted protein XP_001385408.1 335065 D 322104 CDS PICST_49015 126137772 4839913 336822..337100 1 NC_009046.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein 337100 4839913 PICST_49015 Pichia stipitis CBS 6054 predicted protein XP_001385409.1 336822 D 322104 CDS PICST_61692 150866229 4840073 complement(join(<337312..337539,337714..337747,337775..338136)) 1 NC_009046.1 predicted protein 338136 4840073 PICST_61692 Pichia stipitis CBS 6054 predicted protein XP_001385752.2 <337312 R 322104 CDS PICST_23026 126137774 4840299 join(338989..339240,339268..>339426) 1 NC_009046.1 predicted protein 339240 4840299 PICST_23026 Pichia stipitis CBS 6054 predicted protein XP_001385410.1 338989 D 322104 CDS PICST_61460 150866230 4840074 complement(join(<340508..341840,341865..342019)) 1 NC_009046.1 predicted protein 342019 4840074 PICST_61460 Pichia stipitis CBS 6054 predicted protein XP_001385753.2 <340508 R 322104 CDS PICST_48071 126137776 4840300 344383..345426 1 NC_009046.1 Putative arsenical pump-driving ATPase (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase); go_component: membrane; go_function: ATP binding; go_process: anion transport; pump-driving ATPase 345426 ARR4 4840300 ARR4 Pichia stipitis CBS 6054 pump-driving ATPase XP_001385411.1 344383 D 322104 CDS PICST_47694 126137778 4840075 345686..345841 1 NC_009046.1 predicted protein 345841 4840075 PICST_47694 Pichia stipitis CBS 6054 predicted protein XP_001385412.1 345686 D 322104 CDS PICST_78962 126137780 4840076 346524..347333 1 NC_009046.1 go_function: hydrolase activity; carboxymethylenebutenolidase 347333 DLH1 4840076 DLH1 Pichia stipitis CBS 6054 carboxymethylenebutenolidase XP_001385413.1 346524 D 322104 CDS PICST_90188 126137782 4840077 347640..348692 1 NC_009046.1 Eukaryotic translation initiation factor 3 39 kDa subunit (eIF3 p39) (Translation initiation factor eIF3, p39 subunit) 348692 TIF34 4840077 TIF34 Pichia stipitis CBS 6054 Eukaryotic translation initiation factor 3 39 kDa subunit (eIF3 p39) (Translation initiation factor eIF3, p39 subunit) XP_001385414.1 347640 D 322104 CDS PICST_32663 150865975 4840078 349209..350168 1 NC_009046.1 predicted protein 350168 4840078 PICST_32663 Pichia stipitis CBS 6054 predicted protein XP_001385415.2 349209 D 322104 CDS PICST_49179 150865976 4840079 350961..353066 1 NC_009046.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; nucleotide excision repair protein 353066 RAD16 4840079 RAD16 Pichia stipitis CBS 6054 nucleotide excision repair protein XP_001385416.2 350961 D 322104 CDS PICST_68020 126137788 4840080 353493..357677 1 NC_009046.1 L-aminoadipate-semialdehyde dehydrogenase large subunit (Alpha-aminoadipate reductase) (Alpha-AR); go_function: catalytic activity; cofactor binding; go_process: metabolism; L-aminoadipate-semialdehyde dehydrogenase, large subunit 357677 LYS2 4840080 LYS2 Pichia stipitis CBS 6054 L-aminoadipate-semialdehyde dehydrogenase, large subunit XP_001385417.1 353493 D 322104 CDS PICST_32667 150865977 4840081 join(357941..359425,359449..359487) 1 NC_009046.1 predicted protein 359487 4840081 PICST_32667 Pichia stipitis CBS 6054 predicted protein XP_001385418.2 357941 D 322104 CDS PICST_78746 150865978 4840082 join(361231..362153,362200..362217,362292..363048) 1 NC_009046.1 go_function: 3',5'-cyclic-nucleotide phosphodiesterase activity; go_process: signal transduction; nucleotide phosphodiesterase 363048 PDE2 4840082 PDE2 Pichia stipitis CBS 6054 nucleotide phosphodiesterase XP_001385419.2 361231 D 322104 CDS PICST_65878 150865979 4840083 364104..366005 1 NC_009046.1 predicted protein 366005 4840083 PICST_65878 Pichia stipitis CBS 6054 predicted protein XP_001385420.2 364104 D 322104 CDS PICST_65879 126138462 4840084 complement(366246..366848) 1 NC_009046.1 predicted protein 366848 4840084 PICST_65879 Pichia stipitis CBS 6054 predicted protein XP_001385754.1 366246 R 322104 CDS PICST_32671 150865980 4840301 367591..368376 1 NC_009046.1 Ras-related GTPase; go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein 368376 RAB7 4840301 RAB7 Pichia stipitis CBS 6054 GTP-binding protein XP_001385421.2 367591 D 322104 CDS PICST_32672 126138464 4840085 complement(368658..369353) 1 NC_009046.1 predicted protein 369353 4840085 PICST_32672 Pichia stipitis CBS 6054 predicted protein XP_001385755.1 368658 R 322104 CDS PICST_32673 150866231 4840302 complement(370409..372649) 1 NC_009046.1 low similarity to Tuftelin-interacting protein 11 in humans similar toprotein required for cell viability in S. cerevisiae; go_component: intracellular; go_function: nucleic acid binding; Tuftelin-interacting protein TIP39, contains G-patch domain 372649 TIP39 4840302 TIP39 Pichia stipitis CBS 6054 Tuftelin-interacting protein TIP39, contains G-patch domain XP_001385756.2 370409 R 322104 CDS PICST_61658 150866232 4840303 complement(join(373250..374344,374378..374734)) 1 NC_009046.1 Autophagy-related protein 17 374734 ATG17 4840303 ATG17 Pichia stipitis CBS 6054 Autophagy-related protein 17 XP_001385757.2 373250 R 322104 CDS PICST_78878 150865981 4840304 375190..376329 1 NC_009046.1 accessory factor associated with RNA polymerase II 376329 CDC73 4840304 CDC73 Pichia stipitis CBS 6054 accessory factor associated with RNA polymerase II XP_001385422.2 375190 D 322104 CDS PICST_47981 126138470 4840086 complement(376451..>377800) 1 NC_009046.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; protein biosynthesis; mitochondrial threonyl tRNA synthetase >377800 MST1 4840086 MST1 Pichia stipitis CBS 6054 mitochondrial threonyl tRNA synthetase XP_001385758.1 376451 R 322104 CDS PICST_49115 126137800 4840305 379120..379494 1 NC_009046.1 conserved hypothetical protein 379494 4840305 PICST_49115 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385423.1 379120 D 322104 CDS PICST_32678 150866233 4839980 complement(379625..381436) 1 NC_009046.1 Hypothetical membrane protein similar to Mitochondrial distribution and morphology protein 31, mitochondrial precursor; Mitochondrial distribution and morphology protein 31, mitochondrial precursor 381436 MDM31 4839980 MDM31 Pichia stipitis CBS 6054 Mitochondrial distribution and morphology protein 31, mitochondrial precursor XP_001385759.2 379625 R 322104 CDS PICST_61494 150865982 4840306 382568..383860 1 NC_009046.1 cysteine desulfurase Selenocysteine lyase 383860 CSD1 4840306 CSD1 Pichia stipitis CBS 6054 cysteine desulfurase Selenocysteine lyase XP_001385424.2 382568 D 322104 CDS PICST_78873 150866234 4839981 complement(384082..385398) 1 NC_009046.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; Glucan 1,3-beta-glucosidase precursor (Exo-1,3-beta-glucanase) 385398 EXG2 4839981 EXG2 Pichia stipitis CBS 6054 Glucan 1,3-beta-glucosidase precursor (Exo-1,3-beta-glucanase) XP_001385760.2 384082 R 322104 CDS PICST_36589 150865983 4840307 389444..391156 1 NC_009046.1 Putative ion transporter similar to the major facilitator superfamily of transporters; transport protein 391156 HOL12 4840307 HOL12 Pichia stipitis CBS 6054 transport protein XP_001385425.2 389444 D 322104 CDS PICST_79093 126137806 4839982 391837..392163 1 NC_009046.1 60S acidic ribosomal protein P1-A (CaRP1A); go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: translational elongation; 60S acidic ribosomal protein P1-A 392163 RPA1 4839982 RPA1 Pichia stipitis CBS 6054 60S acidic ribosomal protein P1-A XP_001385426.1 391837 D 322104 CDS PICST_48494 126138476 4839983 complement(392807..393415) 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L13 393415 RPL13 4839983 RPL13 Pichia stipitis CBS 6054 60S ribosomal protein L13 XP_001385761.1 392807 R 322104 CDS PICST_73324 126137808 4840308 join(394078..394098,394616..395023) 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S16 395023 RPS16 4840308 RPS16 Pichia stipitis CBS 6054 40S ribosomal protein S16 XP_001385427.1 394078 D 322104 CDS PICST_49032 150865984 4839984 396751..399915 1 NC_009046.1 WD40 repeat protein part of complex that catalyses guanyl nucleotide exchange on Ypt6p; WD40 repeat protein 399915 RIC1 4839984 RIC1 Pichia stipitis CBS 6054 WD40 repeat protein XP_001385428.2 396751 D 322104 CDS PICST_84570 126137812 4839985 400165..400530 1 NC_009046.1 NADH-ubiquinone oxidoreductase B14 subunit (NB4M) (Complex I-B14) (CI-B14); go_component: mitochondrial inner membrane; go_function: oxidoreductase activity, acting on NADH or NADPH; go_process: electron transport; NADH-ubiquinone oxidoreductase B14 subunit (Complex I-B14) (CI-B14) 400530 NBM4 4839985 NBM4 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase B14 subunit (Complex I-B14) (CI-B14) XP_001385429.1 400165 D 322104 CDS PICST_84476 126138478 4839986 complement(join(401062..402360,402571..402606,402822..402833)) 1 NC_009046.1 Tubulin beta chain (Beta tubulin) involved in chromosome segregation and nuclear migration; go_component: tubulin; go_function: GTPase activity; GTP binding; go_process: microtubule polymerization; Tubulin beta chain (Beta tubulin) 402833 TUB2 4839986 TUB2 Pichia stipitis CBS 6054 Tubulin beta chain (Beta tubulin) XP_001385762.1 401062 R 322104 CDS PICST_62201 150865985 4840309 join(404050..404476,404579..405338,405416..405435,405449..405972) 1 NC_009046.1 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; putative transcriptional regulator 405972 UGA3.2 4840309 UGA3.2 Pichia stipitis CBS 6054 putative transcriptional regulator XP_001385430.2 404050 D 322104 CDS PICST_90189 150865986 4839987 406405..407403 1 NC_009046.1 go_component: membrane; SNARE protein SED5/Syntaxin 5 407403 SED5 4839987 SED5 Pichia stipitis CBS 6054 SNARE protein SED5/Syntaxin 5 XP_001385431.2 406405 D 322104 CDS PICST_32690 150865987 4839988 408113..408781 1 NC_009046.1 Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated protein VPS32) Involved in derepression of SUC2 in response to glucose limitation involved in late endosome to vacuole transport; go_function: molecular function unknown; Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated protein VPS32) 408781 SNF7 4839988 SNF7 Pichia stipitis CBS 6054 Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated protein VPS32) XP_001385432.2 408113 D 322104 CDS PICST_36598 150865988 4839989 409562..413317 1 NC_009046.1 go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; mitochondrial DNA-directed RNA polymerase 413317 RPO41 4839989 RPO41 Pichia stipitis CBS 6054 mitochondrial DNA-directed RNA polymerase XP_001385433.2 409562 D 322104 CDS PICST_48394 150866235 4839990 complement(join(413577..414282,414373..414449)) 1 NC_009046.1 Maintenance of ploidy protein MOB2 (MPS1 binder 2) Cell cycle-associated protein; protein kinase activator involved in cell cycle and shape regulation 414449 MOB2 4839990 MOB2 Pichia stipitis CBS 6054 protein kinase activator involved in cell cycle and shape regulation XP_001385763.2 413577 R 322104 CDS PICST_32693 150866236 4840310 complement(414989..416743) 1 NC_009046.1 go_function: phosphatidylserine decarboxylase activity; go_process: phospholipid biosynthesis; phosphatidylserine decarboxylase 416743 PSD1 4840310 PSD1 Pichia stipitis CBS 6054 phosphatidylserine decarboxylase XP_001385764.2 414989 R 322104 CDS PICST_62242 150866237 4840089 complement(join(417593..422017,422087..422311)) 1 NC_009046.1 go_process: regulation of cell cycle; Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) 422311 APC1 4840089 APC1 Pichia stipitis CBS 6054 Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) XP_001385765.2 417593 R 322104 CDS PICST_65888 126138486 4840090 complement(422564..423856) 1 NC_009046.1 go_function: GTP binding; go_process: protein biosynthesis; mitochondrial translation elongation factor TU 423856 TUF1 4840090 TUF1 Pichia stipitis CBS 6054 mitochondrial translation elongation factor TU XP_001385766.1 422564 R 322104 CDS PICST_84640 150866238 4840091 complement(424262..425140) 1 NC_009046.1 mannosyltransferase 425140 PMT3 4840091 PMT3 Pichia stipitis CBS 6054 mannosyltransferase XP_001385767.2 424262 R 322104 CDS PICST_32696 150865989 4840092 join(426001..428374,428611..428654) 1 NC_009046.1 low similarity to MUC1, part of complex that catalyses guanyl nucleotide exchange on Ypt6p; possible mannoprotein 428654 MUC1.8 4840092 MUC1.8 Pichia stipitis CBS 6054 possible mannoprotein XP_001385434.2 426001 D 322104 CDS PICST_62784 150866239 4839749 complement(join(430195..432383,432414..432480)) 1 NC_009046.1 ubiquitin ligase binding protein; ubiquitination pathway protein 432480 BUL5 4839749 BUL5 Pichia stipitis CBS 6054 ubiquitination pathway protein XP_001385768.2 430195 R 322104 CDS PICST_61563 150866240 4840093 complement(433033..435258) 1 NC_009046.1 involved in protien ubiqutination; BUL1-like protein 435258 BUL2 4840093 BUL2 Pichia stipitis CBS 6054 BUL1-like protein XP_001385769.2 433033 R 322104 CDS PICST_78698 150865990 4840094 join(436391..437506,437525..438361) 1 NC_009046.1 Gamma-glutamyltransferase precursor (Gamma-glutamyltranspeptidase) (Gamma-GT) (Extracellular matrix protein 38) (CIK1 suppressor protein 2) [Contains: Gamma-glutamyltransferase heavy chain Gamma-glutamyltransferase light chain]; go_function: gamma-glutamyltransferase activity; gamma-glutamyltransferase 438361 EMC38 4840094 EMC38 Pichia stipitis CBS 6054 gamma-glutamyltransferase XP_001385435.2 436391 D 322104 CDS PICST_68034 150865991 4839750 439564..441822 1 NC_009046.1 go_function: acyltransferase activity; mitochondrial carnitine acetyltransferase 441822 YAT1 4839750 YAT1 Pichia stipitis CBS 6054 mitochondrial carnitine acetyltransferase XP_001385436.2 439564 D 322104 CDS PICST_68035 150866241 4839751 complement(441984..445154) 1 NC_009046.1 Morphogenesis-related protein MSB1 (Multicopy suppressor of bud emergence 1) polarity establishment and bud formation protein; polarity establishment and bud formation protein 445154 MSB1 4839751 MSB1 Pichia stipitis CBS 6054 polarity establishment and bud formation protein XP_001385770.2 441984 R 322104 CDS PICST_32703 150866242 4840095 complement(join(447250..449148,449270..449281)) 1 NC_009046.1 go_component: nucleus; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 449281 4840095 PICST_32703 Pichia stipitis CBS 6054 predicted protein XP_001385771.2 447250 R 322104 CDS PICST_84949 150866243 4840096 complement(450323..452233) 1 NC_009046.1 Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (ER alpha-1,2-mannosidase) (Man(9)-alpha-mannosidase); go_component: membrane; go_function: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; calcium ion binding; go_process: N-linked glycosylation; mannosyl- oligosaccharide 1,2-alpha-mannosidase 452233 MNS1 4840096 MNS1 Pichia stipitis CBS 6054 mannosyl- oligosaccharide 1,2-alpha-mannosidase XP_001385772.2 450323 R 322104 CDS PICST_32705 150865992 4840097 join(453852..455938,456017..456219,456310..456524) 1 NC_009046.1 heme binding fungal transcrption factor; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; WAR1; transcription factor activity 456524 WAR1 4840097 WAR1 Pichia stipitis CBS 6054 WAR1; transcription factor activity XP_001385437.2 453852 D 322104 CDS PICST_61331 150865993 4839752 456808..457392 1 NC_009046.1 predicted protein 457392 4839752 PICST_61331 Pichia stipitis CBS 6054 predicted protein XP_001385438.2 456808 D 322104 CDS PICST_36608 150866244 4839753 complement(457802..459592) 1 NC_009046.1 go_process: amino acid metabolism; predicted protein 459592 4839753 PICST_36608 Pichia stipitis CBS 6054 predicted protein XP_001385773.2 457802 R 322104 CDS PICST_72872 150866245 4840098 complement(460129..463272) 1 NC_009046.1 go_function: hydroxymethylglutaryl-CoA reductase (NADPH) activity; go_process: biosynthesis; 3-hydroxy-3-methyl-glutaryl coenzyme A reductase (HMG-CoA) 463272 HMG1 4840098 HMG1 Pichia stipitis CBS 6054 3-hydroxy-3-methyl-glutaryl coenzyme A reductase (HMG-CoA) XP_001385774.2 460129 R 322104 CDS PICST_78835 126138504 4840099 complement(464490..465785) 1 NC_009046.1 go_process: protein folding; predicted protein 465785 4840099 PICST_78835 Pichia stipitis CBS 6054 predicted protein XP_001385775.1 464490 R 322104 CDS PICST_36611 126138506 4840100 complement(join(466213..466731,467221..467232)) 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 467232 4840100 PICST_36611 Pichia stipitis CBS 6054 predicted protein XP_001385776.1 466213 R 322104 CDS PICST_61977 150866246 4840101 complement(join(467989..468776,468816..>471822)) 1 NC_009046.1 Anthranilate phosphoribosyltransferase (tentative); putative xylanase/chitin deacetylase 468776 XYC2 4840101 XYC2 Pichia stipitis CBS 6054 putative xylanase/chitin deacetylase XP_001385777.2 467989 R 322104 CDS PICST_90304 126138510 4839968 complement(474157..474927) 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 474927 4839968 PICST_90304 Pichia stipitis CBS 6054 predicted protein XP_001385778.1 474157 R 322104 CDS PICST_62699 150865994 4839969 join(475641..475672,475874..476441) 1 NC_009046.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 476441 4839969 PICST_62699 Pichia stipitis CBS 6054 predicted protein XP_001385439.2 475641 D 322104 CDS PICST_62569 150865995 4839754 join(477115..477774,478030..479757) 1 NC_009046.1 go_function: ATP binding; DNA binding; Origin recognition complex, subunit 1 479757 ORC1 4839754 ORC1 Pichia stipitis CBS 6054 Origin recognition complex, subunit 1 XP_001385440.2 477115 D 322104 CDS PICST_79024 126137836 4839755 479940..480560 1 NC_009046.1 predicted protein 480560 4839755 PICST_79024 Pichia stipitis CBS 6054 predicted protein XP_001385441.1 479940 D 322104 CDS PICST_62764 150866247 4839756 complement(join(480648..481720,481748..483689)) 1 NC_009046.1 protein putatively involved in cell wall biogenesis and architecture 483689 4839756 PICST_62764 Pichia stipitis CBS 6054 protein putatively involved in cell wall biogenesis and architecture XP_001385779.2 480648 R 322104 CDS PICST_62387 150866248 4839970 complement(484194..485042) 1 NC_009046.1 low temperature responsive protein 485042 LOT5 4839970 LOT5 Pichia stipitis CBS 6054 low temperature responsive protein XP_001385780.2 484194 R 322104 CDS PICST_90276 150866249 4839971 complement(485541..487247) 1 NC_009046.1 go_function: hydrolase activity; predicted protein 487247 4839971 PICST_90276 Pichia stipitis CBS 6054 predicted protein XP_001385781.2 485541 R 322104 CDS PICST_90612 126138518 4839972 complement(join(488224..489542,489609..489666)) 1 NC_009046.1 go_function: catalytic activity; ornithine decarboxylase 489666 SPE1 4839972 SPE1 Pichia stipitis CBS 6054 ornithine decarboxylase XP_001385782.1 488224 R 322104 CDS PICST_36619 150866250 4839973 complement(join(490270..490526,490569..490871,491025..491526,491566..491595,491617..492723)) 1 NC_009046.1 has cysteine rich putative zinc finger esential for function; go_function: zinc ion binding; go_process: intracellular protein transport; vacuolar protein sorting-associated protein hydrophilic protein 492723 VPS27 4839973 VPS27 Pichia stipitis CBS 6054 vacuolar protein sorting-associated protein hydrophilic protein XP_001385783.2 490270 R 322104 CDS PICST_36620 126138522 4839974 complement(493307..493972) 1 NC_009046.1 predicted protein 493972 4839974 PICST_36620 Pichia stipitis CBS 6054 predicted protein XP_001385784.1 493307 R 322104 CDS PICST_19145 150866251 4839975 complement(<496192..>497157) 1 NC_009046.1 predicted protein >497157 4839975 PICST_19145 Pichia stipitis CBS 6054 predicted protein XP_001385785.2 <496192 R 322104 CDS PICST_32723 150865996 4839976 499987..501015 1 NC_009046.1 predicted protein 501015 4839976 PICST_32723 Pichia stipitis CBS 6054 predicted protein XP_001385442.2 499987 D 322104 CDS PICST_32724 150866252 4839757 complement(501951..503660) 1 NC_009046.1 go_component: membrane; go_function: drug transporter activity; antiporter activity; go_process: multidrug transport; predicted protein 503660 4839757 PICST_32724 Pichia stipitis CBS 6054 predicted protein XP_001385786.2 501951 R 322104 CDS PICST_48452 150865997 4839977 505025..505933 1 NC_009046.1 similar to conjugated polyketone reductase (PKR1); aldose reductase 505933 AKR4 4839977 AKR4 Pichia stipitis CBS 6054 aldose reductase XP_001385443.2 505025 D 322104 CDS PICST_61958 150866253 4839758 complement(<506089..506994) 1 NC_009046.1 predicted protein 506994 4839758 PICST_61958 Pichia stipitis CBS 6054 predicted protein XP_001385787.2 <506089 R 322104 CDS PICST_61591 150866254 4839978 complement(507260..507904) 1 NC_009046.1 go_function: transferase activity, transferring hexosyl groups; carbohydrate binding; go_process: carbohydrate metabolism; lipid glycosylation; syntenic homolog of ALG13_YEAST UDP-N-acetylglucosamine transferase subunit ALG13 (Asparagine linked glycosylation protein 13) 507904 ALG13 4839978 ALG13 Pichia stipitis CBS 6054 syntenic homolog of ALG13_YEAST UDP-N-acetylglucosamine transferase subunit ALG13 (Asparagine linked glycosylation protein 13) XP_001385788.2 507260 R 322104 CDS PICST_36622 126137842 4839979 508476..509228 1 NC_009046.1 hypothetical protein Glucose/ribitol dehydrogenase; go_function: oxidoreductase activity; go_process: metabolism; Predicted short chain-type dehydrogenase 509228 YKH1.2 4839979 YKH1.2 Pichia stipitis CBS 6054 Predicted short chain-type dehydrogenase XP_001385444.1 508476 D 322104 CDS PICST_73274 126137844 4839759 509584..510237 1 NC_009046.1 C-8 sterol isomerase (Delta-8--delta-7 sterol isomerase); go_component: endoplasmic reticulum; go_function: C-8 sterol isomerase activity; go_process: ergosterol biosynthesis; C-8 sterol isomerase 510237 ERG2 4839759 ERG2 Pichia stipitis CBS 6054 C-8 sterol isomerase XP_001385445.1 509584 D 322104 CDS PICST_36624 150865998 4839760 514167..515123 1 NC_009046.1 Autophagy-related protein 3 (Autophagy-related E2-like conjugation enzyme ATG3); protein involved in autophagocytosis during starvation 515123 ATG3 4839760 ATG3 Pichia stipitis CBS 6054 protein involved in autophagocytosis during starvation XP_001385446.2 514167 D 322104 CDS PICST_72946 150865999 4839761 515552..517594 1 NC_009046.1 Phospholipid:diacylglycerol acyltransferase (PDAT) (Pombe LRO1 homolog 1); go_function: phosphatidylcholine-sterol O-acyltransferase activity; go_process: lipid metabolism; phospholipid:diacylglycerol acyltransferase 517594 LRO1 4839761 LRO1 Pichia stipitis CBS 6054 phospholipid:diacylglycerol acyltransferase XP_001385447.2 515552 D 322104 CDS PICST_90151 150866000 4839928 517984..520026 1 NC_009046.1 go_function: calcium ion binding; possible rho-like GTPase involved in secretory vesicle transport 520026 GON1 4839928 GON1 Pichia stipitis CBS 6054 possible rho-like GTPase involved in secretory vesicle transport XP_001385448.2 517984 D 322104 CDS PICST_61583 126137852 4839929 520204..520806 1 NC_009046.1 go_component: nucleus; go_process: ribosome biogenesis and assembly; predicted protein 520806 4839929 PICST_61583 Pichia stipitis CBS 6054 predicted protein XP_001385449.1 520204 D 322104 CDS PICST_61327 150866001 4839930 join(<522095..522283,522308..522568) 1 NC_009046.1 predicted protein 522568 4839930 PICST_61327 Pichia stipitis CBS 6054 predicted protein XP_001385450.2 <522095 D 322104 CDS PICST_48230 150866002 4839931 523497..527483 1 NC_009046.1 hypothetical protein 527483 4839931 PICST_48230 Pichia stipitis CBS 6054 hypothetical protein XP_001385451.2 523497 D 322104 CDS PICST_62296 150866255 4839932 complement(527655..531341) 1 NC_009046.1 DNA binding protein involved in transcriptional regulation; go_component: nucleus; go_process: regulation of transcription, DNA-dependent; transcription regulatory protein 531341 SIN3 4839932 SIN3 Pichia stipitis CBS 6054 transcription regulatory protein XP_001385789.2 527655 R 322104 CDS PICST_32737 150866256 4840005 complement(join(<531444..531766,531880..531926,532307..532365)) 1 NC_009046.1 predicted protein 532365 4840005 PICST_32737 Pichia stipitis CBS 6054 predicted protein XP_001385790.2 <531444 R 322104 CDS PICST_62535 126137858 4840006 join(532979..533031,533112..533427) 1 NC_009046.1 RNA polymerase II core subunit 533427 RBP11 4840006 RBP11 Pichia stipitis CBS 6054 RNA polymerase II core subunit XP_001385452.1 532979 D 322104 CDS PICST_68049 150866257 4839933 complement(533958..535958) 1 NC_009046.1 dispensable for premeiotic DNA synthesis and recombination, but required for tripartite synaptonemal complexes, haploidization, and spores; go_function: protein kinase activity; ATP binding; protein serine/threonine kinase activity; go_process: protein amino acid phosphorylation; cell cycle; CDC5 535958 CDC5 4839933 CDC5 Pichia stipitis CBS 6054 CDC5 XP_001385791.2 533958 R 322104 CDS PICST_32740 150866258 4840007 complement(537373..540540) 1 NC_009046.1 Histone-lysine N-methyltransferase, H3 lysine-4 specific (COMPASS component SET1) (SET domain protein 1); histone methyltransferase involved in gene regulation 540540 SET1 4840007 SET1 Pichia stipitis CBS 6054 histone methyltransferase involved in gene regulation XP_001385792.2 537373 R 322104 CDS PICST_62206 126138540 4840008 complement(541531..>541887) 1 NC_009046.1 NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (NUYM) (Complex I-21KD) (CI-21KD); go_function: oxidoreductase activity, acting on NADH or NADPH; go_process: electron transport; NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (Complex I-21KD) (CI-21KD) >541887 NUO21.2 4840008 NUO21.2 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (Complex I-21KD) (CI-21KD) XP_001385793.1 541531 R 322104 CDS PICST_48474 150866003 4840009 542877..544454 1 NC_009046.1 allantoate permease 544454 DAL9 4840009 DAL9 Pichia stipitis CBS 6054 allantoate permease XP_001385453.2 542877 D 322104 CDS PICST_62776 150866004 4839934 join(545126..545714,545763..546358) 1 NC_009046.1 predicted protein 546358 4839934 PICST_62776 Pichia stipitis CBS 6054 predicted protein XP_001385454.2 545126 D 322104 CDS PICST_47702 126137864 4839935 546870..549821 1 NC_009046.1 go_function: protein binding; hypothetical signalling-associated PDZ domain containing protein 549821 PDZ1 4839935 PDZ1 Pichia stipitis CBS 6054 hypothetical signalling-associated PDZ domain containing protein XP_001385455.1 546870 D 322104 CDS PICST_62530 126138542 4839936 complement(549977..550246) 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 550246 4839936 PICST_62530 Pichia stipitis CBS 6054 predicted protein XP_001385794.1 549977 R 322104 CDS PICST_32745 150866259 4840010 complement(join(550605..551098,551165..551258)) 1 NC_009046.1 predicted protein 551258 4840010 PICST_32745 Pichia stipitis CBS 6054 predicted protein XP_001385795.2 550605 R 322104 CDS PICST_78743 126138546 4840011 complement(551513..553231) 1 NC_009046.1 alpha-D-glucosidase (maltase) ( alpha-amylase) (MALT); go_function: alpha-amylase activity; go_process: carbohydrate metabolism; alpha-glucosidase maltase 553231 MAL8 4840011 MAL8 Pichia stipitis CBS 6054 alpha-glucosidase maltase XP_001385796.1 551513 R 322104 CDS PICST_48369 126137866 4840012 554444..556195 1 NC_009046.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; maltose permease 556195 MAL4 4840012 MAL4 Pichia stipitis CBS 6054 maltose permease XP_001385456.1 554444 D 322104 CDS PICST_32748 150866005 4839937 559912..560739 1 NC_009046.1 predicted protein 560739 4839937 PICST_32748 Pichia stipitis CBS 6054 predicted protein XP_001385457.2 559912 D 322104 CDS PICST_65905 150866260 4839938 complement(560855..563467) 1 NC_009046.1 go_function: membrane alanyl aminopeptidase activity; go_process: proteolysis and peptidolysis; alanine/arginine aminopeptidase 563467 APE2.2 4839938 APE2.2 Pichia stipitis CBS 6054 alanine/arginine aminopeptidase XP_001385797.2 560855 R 322104 CDS PICST_79040 150866261 4840013 complement(564497..565030) 1 NC_009046.1 go_function: isomerase activity; Peptidyl-prolyl cis-trans isomerase 565030 ESS1.1 4840013 ESS1.1 Pichia stipitis CBS 6054 Peptidyl-prolyl cis-trans isomerase XP_001385798.2 564497 R 322104 CDS PICST_32751 126138552 4840014 complement(565333..565863) 1 NC_009046.1 go_function: isomerase activity; peptidylprolyl cis/trans isomerase 565863 ESS1.2 4840014 ESS1.2 Pichia stipitis CBS 6054 peptidylprolyl cis/trans isomerase XP_001385799.1 565333 R 322104 CDS PICST_32752 150866262 4840015 complement(join(567988..568097,568136..569310,569667..569733,569771..569849)) 1 NC_009046.1 putative RNA directed DNA polymerase 569849 POL5.6 4840015 POL5.6 Pichia stipitis CBS 6054 putative RNA directed DNA polymerase XP_001385800.2 567988 R 322104 CDS PICST_32753 150866263 4840016 complement(570393..571637) 1 NC_009046.1 hypothetical protein occurs in multiple copies through genome; Hypothetical multicopy protein 571637 HMC1 4840016 HMC1 Pichia stipitis CBS 6054 Hypothetical multicopy protein XP_001385801.2 570393 R 322104 CDS PICST_90609 150866264 4840017 complement(572180..573052) 1 NC_009046.1 go_function: ATP binding; Uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) 573052 URA6 4840017 URA6 Pichia stipitis CBS 6054 Uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) XP_001385802.2 572180 R 322104 CDS PICST_61312 150866265 4840186 complement(join(573424..574148,574214..574250)) 1 NC_009046.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 574250 4840186 PICST_61312 Pichia stipitis CBS 6054 predicted protein XP_001385803.2 573424 R 322104 CDS PICST_61314 126138562 4840187 complement(574514..575323) 1 NC_009046.1 go_function: oxidoreductase activity; go_process: metabolism; peroxisomal 2,4- dienoyl-CoA reductase 575323 SPS24 4840187 SPS24 Pichia stipitis CBS 6054 peroxisomal 2,4- dienoyl-CoA reductase XP_001385804.1 574514 R 322104 CDS PICST_61902 150866266 4840188 complement(join(576058..579606,579634..579745,579941..580023)) 1 NC_009046.1 go_function: small GTPase regulator activity; predicted protein 580023 4840188 PICST_61902 Pichia stipitis CBS 6054 predicted protein XP_001385805.2 576058 R 322104 CDS PICST_12169 150866006 4840189 581701..>582861 1 NC_009046.1 predicted protein >582861 4840189 PICST_12169 Pichia stipitis CBS 6054 predicted protein XP_001385458.2 581701 D 322104 CDS PICST_62080 126137872 4839939 584412..586061 1 NC_009046.1 go_function: catalytic activity; go_process: metabolism; Isocitrate lyase (Isocitrase) (Isocitratase) (ICL) 586061 ICL1 4839939 ICL1 Pichia stipitis CBS 6054 Isocitrate lyase (Isocitrase) (Isocitratase) (ICL) XP_001385459.1 584412 D 322104 CDS PICST_32760 150866007 4839940 586479..587984 1 NC_009046.1 predicted protein 587984 4839940 PICST_32760 Pichia stipitis CBS 6054 predicted protein XP_001385460.2 586479 D 322104 CDS PICST_48986 126138566 4839941 complement(588141..>589103) 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Negative regulator of the PHO system (Serine/threonine-protein kinase PHO85) (CaPHO85) >589103 PHO85 4839941 PHO85 Pichia stipitis CBS 6054 Negative regulator of the PHO system (Serine/threonine-protein kinase PHO85) (CaPHO85) XP_001385806.1 588141 R 322104 CDS PICST_48845 150866267 4840190 complement(589704..591452) 1 NC_009046.1 predicted protein 591452 4840190 PICST_48845 Pichia stipitis CBS 6054 predicted protein XP_001385807.2 589704 R 322104 CDS PICST_32763 150866268 4840191 complement(join(591735..593272,593351..593507)) 1 NC_009046.1 predicted protein 593507 4840191 PICST_32763 Pichia stipitis CBS 6054 predicted protein XP_001385808.2 591735 R 322104 CDS PICST_62848 150866269 4840192 complement(594561..594857) 1 NC_009046.1 predicted protein 594857 4840192 PICST_62848 Pichia stipitis CBS 6054 predicted protein XP_001385809.2 594561 R 322104 CDS PICST_90103 150866270 4840193 complement(join(595547..595980,596173..597187)) 1 NC_009046.1 predicted protein 597187 4840193 PICST_90103 Pichia stipitis CBS 6054 predicted protein XP_001385810.2 595547 R 322104 CDS PICST_84351 150866008 4840194 597391..600207 1 NC_009046.1 go_component: cytoplasm; go_process: intracellular protein transport; predicted protein 600207 4840194 PICST_84351 Pichia stipitis CBS 6054 predicted protein XP_001385461.2 597391 D 322104 CDS PICST_32767 150866271 4839774 complement(600284..601648) 1 NC_009046.1 predicted protein 601648 4839774 PICST_32767 Pichia stipitis CBS 6054 predicted protein XP_001385811.2 600284 R 322104 CDS PICST_90702 126137878 4840195 join(601924..603889,604001..604119) 1 NC_009046.1 nucleolar RNA recognition motif-containing protein; RNA recognition motif-containing protein 604119 NOP4 4840195 NOP4 Pichia stipitis CBS 6054 RNA recognition motif-containing protein XP_001385462.1 601924 D 322104 CDS PICST_68058 150866272 4839775 complement(604517..605461) 1 NC_009046.1 go_function: hydrolase activity; predicted protein 605461 4839775 PICST_68058 Pichia stipitis CBS 6054 predicted protein XP_001385812.2 604517 R 322104 CDS PICST_36650 126137880 4840196 606729..607292 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 607292 4840196 PICST_36650 Pichia stipitis CBS 6054 predicted protein XP_001385463.1 606729 D 322104 CDS PICST_84721 126137882 4839776 608808..609068 1 NC_009046.1 go_component: mitochondrion; go_function: enzyme inhibitor activity; go_process: negative regulation of nucleoside metabolism; predicted protein 609068 4839776 PICST_84721 Pichia stipitis CBS 6054 predicted protein XP_001385464.1 608808 D 322104 CDS PICST_32772 150866009 4839777 610125..612215 1 NC_009046.1 Required for invasion and pseudohyphae formation in response to nitrogen starvation; hypothetical protein 612215 MUC1 4839777 MUC1 Pichia stipitis CBS 6054 hypothetical protein XP_001385465.2 610125 D 322104 CDS PICST_32773 150866010 4839778 613083..614111 1 NC_009046.1 predicted protein 614111 4839778 PICST_32773 Pichia stipitis CBS 6054 predicted protein XP_001385466.2 613083 D 322104 CDS PICST_65910 150866273 4839779 complement(join(614409..614932,614954..615205,615254..615431,615480..616001)) 1 NC_009046.1 Regulatory Particle Non-ATPase. zf-C2H2 Zinc finger, C2H2 type; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 616001 RPN4 4839779 RPN4 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001385813.2 614409 R 322104 CDS PICST_61775 150866274 4840197 complement(join(617397..617708,617763..617816)) 1 NC_009046.1 predicted protein 617816 4840197 PICST_61775 Pichia stipitis CBS 6054 predicted protein XP_001385814.2 617397 R 322104 CDS PICST_48292 150866275 4840198 complement(618238..619020) 1 NC_009046.1 go_function: catalytic activity; go_process: metabolism; phosphoglycerate mutase 619020 GPM1.2 4840198 GPM1.2 Pichia stipitis CBS 6054 phosphoglycerate mutase XP_001385815.2 618238 R 322104 CDS PICST_62290 150866011 4840018 join(619722..619790,619833..620441) 1 NC_009046.1 predicted protein 620441 4840018 PICST_62290 Pichia stipitis CBS 6054 predicted protein XP_001385467.2 619722 D 322104 CDS PICST_61679 126138586 4839780 complement(620980..621291) 1 NC_009046.1 go_function: DNA binding; predicted protein 621291 4839780 PICST_61679 Pichia stipitis CBS 6054 predicted protein XP_001385816.1 620980 R 322104 CDS PICST_90527 126137890 4840019 622218..622628 1 NC_009046.1 go_function: DNA binding; predicted protein 622628 4840019 PICST_90527 Pichia stipitis CBS 6054 predicted protein XP_001385468.1 622218 D 322104 CDS PICST_32780 150866276 4839781 complement(623052..624320) 1 NC_009046.1 predicted protein 624320 4839781 PICST_32780 Pichia stipitis CBS 6054 predicted protein XP_001385817.2 623052 R 322104 CDS PICST_61651 126138590 4840020 complement(624795..625979) 1 NC_009046.1 predicted protein 625979 4840020 PICST_61651 Pichia stipitis CBS 6054 predicted protein XP_001385818.1 624795 R 322104 CDS PICST_79135 126138592 4840021 complement(626360..628399) 1 NC_009046.1 Acetyl-coenzyme A synthetase 2 [EC:6.2.1.1] [KO:K01895] (Acetate--CoA ligase 2) (Acyl-activating enzyme 2); go_function: catalytic activity; go_process: metabolism; Acyl-CoA synthetase 2 (ACS2) 628399 ACS2 4840021 ACS2 Pichia stipitis CBS 6054 Acyl-CoA synthetase 2 (ACS2) XP_001385819.1 626360 R 322104 CDS PICST_84662 126138594 4840022 complement(630721..632652) 1 NC_009046.1 heat shock protein 70, Hsp70 family (SSA2) upregulated under oxygen limitation very low under aerobic conditions highest on XOL; heat shock protein 70, Hsp70 family (SSA2) 632652 SSA2.1 4840022 SSA2.1 Pichia stipitis CBS 6054 heat shock protein 70, Hsp70 family (SSA2) XP_001385820.1 630721 R 322104 CDS PICST_68064 150866277 4840023 complement(join(633620..634327,634543..634623)) 1 NC_009046.1 predicted protein 634623 4840023 PICST_68064 Pichia stipitis CBS 6054 predicted protein XP_001385821.2 633620 R 322104 CDS PICST_84419 126138598 4840024 complement(join(635085..636373,636604..636613)) 1 NC_009046.1 go_function: GTP binding; go_process: cell cycle; predicted protein 636613 4840024 PICST_84419 Pichia stipitis CBS 6054 predicted protein XP_001385822.1 635085 R 322104 CDS PICST_32786 150866278 4840025 complement(637844..638398) 1 NC_009046.1 predicted protein 638398 4840025 PICST_32786 Pichia stipitis CBS 6054 predicted protein XP_001385823.2 637844 R 322104 CDS PICST_36661 126137892 4840026 638898..639329 1 NC_009046.1 predicted protein 639329 4840026 PICST_36661 Pichia stipitis CBS 6054 predicted protein XP_001385469.1 638898 D 322104 CDS PICST_48188 150866012 4839782 <639454..639828 1 NC_009046.1 predicted protein 639828 4839782 PICST_48188 Pichia stipitis CBS 6054 predicted protein XP_001385470.2 <639454 D 322104 CDS PICST_72879 150866013 4839783 640357..643260 1 NC_009046.1 predicted protein 643260 4839783 PICST_72879 Pichia stipitis CBS 6054 predicted protein XP_001385471.2 640357 D 322104 CDS PICST_73488 126138602 4839784 complement(643614..644009) 1 NC_009046.1 go_function: DNA binding; predicted protein 644009 4839784 PICST_73488 Pichia stipitis CBS 6054 predicted protein XP_001385824.1 643614 R 322104 CDS PICST_73490 126137898 4840027 644993..645388 1 NC_009046.1 go_function: DNA binding; predicted protein 645388 4840027 PICST_73490 Pichia stipitis CBS 6054 predicted protein XP_001385472.1 644993 D 322104 CDS PICST_47978 150866014 4839785 646033..646926 1 NC_009046.1 predicted protein 646926 4839785 PICST_47978 Pichia stipitis CBS 6054 predicted protein XP_001385473.2 646033 D 322104 CDS PICST_48043 150866279 4839786 complement(646967..647668) 1 NC_009046.1 predicted protein 647668 4839786 PICST_48043 Pichia stipitis CBS 6054 predicted protein XP_001385825.2 646967 R 322104 CDS PICST_32792 150866015 4840028 648024..650330 1 NC_009046.1 predicted protein 650330 4840028 PICST_32792 Pichia stipitis CBS 6054 predicted protein XP_001385474.2 648024 D 322104 CDS PICST_36667 150866280 4839787 complement(650501..651058) 1 NC_009046.1 predicted protein 651058 4839787 PICST_36667 Pichia stipitis CBS 6054 predicted protein XP_001385826.2 650501 R 322104 CDS PICST_61741 150866281 4840029 complement(651390..652247) 1 NC_009046.1 predicted protein 652247 4840029 PICST_61741 Pichia stipitis CBS 6054 predicted protein XP_001385827.2 651390 R 322104 CDS PICST_32795 150866282 4840030 complement(join(652782..652931,653020..653544)) 1 NC_009046.1 predicted protein 653544 4840030 PICST_32795 Pichia stipitis CBS 6054 predicted protein XP_001385828.2 652782 R 322104 CDS PICST_90315 126137904 4840031 657409..658257 1 NC_009046.1 go_component: mitochondrial outer membrane; go_function: voltage-gated ion-selective channel activity; go_process: anion transport; Porin/voltage-dependent anion-selective channel protein 658257 POR1 4840031 POR1 Pichia stipitis CBS 6054 Porin/voltage-dependent anion-selective channel protein XP_001385475.1 657409 D 322104 CDS PICST_90608 150866016 4839788 join(658873..659153,659244..659506,659555..659958) 1 NC_009046.1 cyclin-related subunit of the kinase complex that phosphorylates the RPO21 CTD (carboxy-terminal domain) also called CTDK-I beta subunit; RNA polymerase II C-terminal domain kinase beta subunit 659958 CTK2 4839788 CTK2 Pichia stipitis CBS 6054 RNA polymerase II C-terminal domain kinase beta subunit XP_001385476.2 658873 D 322104 CDS PICST_61854 150866283 4840355 complement(660215..660859) 1 NC_009046.1 predicted protein 660859 4840355 PICST_61854 Pichia stipitis CBS 6054 predicted protein XP_001385829.2 660215 R 322104 CDS PICST_32799 150866017 4840032 join(661167..661169,661219..662355) 1 NC_009046.1 Geranylgeranyl transferase type II alpha subunit (Type II protein geranyl-geranyltransferase alpha subunit) (GGTase-II-alpha) (PGGT) (YPT1/SEC4 proteins geranylgeranyltransferase alpha subunit); go_function: protein prenyltransferase activity; go_process: protein amino acid prenylation; Geranylgeranyl transferase type II alpha subunit 662355 BET4 4840032 BET4 Pichia stipitis CBS 6054 Geranylgeranyl transferase type II alpha subunit XP_001385477.2 661167 D 322104 CDS PICST_62202 150866284 4840356 complement(join(662991..664369,664385..664658)) 1 NC_009046.1 predicted protein 664658 4840356 PICST_62202 Pichia stipitis CBS 6054 predicted protein XP_001385830.2 662991 R 322104 CDS PICST_48016 126137910 4840033 665901..>666329 1 NC_009046.1 predicted protein >666329 4840033 PICST_48016 Pichia stipitis CBS 6054 predicted protein XP_001385478.1 665901 D 322104 CDS PICST_32802 126137912 4840357 666771..668906 1 NC_009046.1 go_function: RNA binding; predicted protein 668906 4840357 PICST_32802 Pichia stipitis CBS 6054 predicted protein XP_001385479.1 666771 D 322104 CDS PICST_61618 150866285 4840358 complement(669001..>671007) 1 NC_009046.1 go_component: cytoplasm; go_function: tRNA ligase activity; ATP binding; nucleic acid binding; go_process: tRNA aminoacylation for protein translation; aspartyl-tRNA synthetase >671007 MSD1 4840358 MSD1 Pichia stipitis CBS 6054 aspartyl-tRNA synthetase XP_001385831.2 669001 R 322104 CDS PICST_47685 150866286 4840283 complement(671593..673158) 1 NC_009046.1 predicted protein 673158 4840283 PICST_47685 Pichia stipitis CBS 6054 predicted protein XP_001385832.2 671593 R 322104 CDS PICST_48097 150866018 4840284 674898..676313 1 NC_009046.1 go_component: membrane; go_function: glycolipid 2-alpha-mannosyltransferase activity; go_process: protein amino acid glycosylation; Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) 676313 KTR4 4840284 KTR4 Pichia stipitis CBS 6054 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase) XP_001385480.2 674898 D 322104 CDS PICST_48928 150866287 4840359 complement(676505..677404) 1 NC_009046.1 go_function: molecular function unknown; predicted protein 677404 4840359 PICST_48928 Pichia stipitis CBS 6054 predicted protein XP_001385833.2 676505 R 322104 CDS PICST_61322 150866019 4840285 678164..679087 1 NC_009046.1 predicted protein 679087 4840285 PICST_61322 Pichia stipitis CBS 6054 predicted protein XP_001385481.2 678164 D 322104 CDS PICST_48306 150866288 4840360 complement(<679747..680367) 1 NC_009046.1 predicted protein 680367 4840360 PICST_48306 Pichia stipitis CBS 6054 predicted protein XP_001385834.2 <679747 R 322104 CDS PICST_65920 126137918 4840286 681450..683180 1 NC_009046.1 predicted protein 683180 4840286 PICST_65920 Pichia stipitis CBS 6054 predicted protein XP_001385482.1 681450 D 322104 CDS PICST_84881 126137920 4840361 685924..686706 1 NC_009046.1 Brain Modulosignalin Homolog Multifunctional chaperone (14-3-3 family) Posttranslational modification, protein turnover; go_function: protein domain specific binding; Multifunctional chaperone (14-3-3 family) Posttranslational modification, protein turnover 686706 BMH1 4840361 BMH1 Pichia stipitis CBS 6054 Multifunctional chaperone (14-3-3 family) Posttranslational modification, protein turnover XP_001385483.1 685924 D 322104 CDS PICST_61997 150866020 4840362 688524..689630 1 NC_009046.1 go_function: GTP binding; go_process: cell cycle; predicted protein 689630 4840362 PICST_61997 Pichia stipitis CBS 6054 predicted protein XP_001385484.2 688524 D 322104 CDS PICST_61599 150866021 4840363 join(<690669..690906,690952..>693272) 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; hypothetical protein 690906 4840363 PICST_61599 Pichia stipitis CBS 6054 hypothetical protein XP_001385485.2 <690669 D 322104 CDS PICST_68074 150866289 4840364 complement(694100..696124) 1 NC_009046.1 Fungal specific
transcription factor; go_function: DNA binding; transcription factor activity; zinc ion binding; go_process: transcription; regulation of transcription, DNA-dependent; putative zinc-finger protein 696124 FST10 4840364 FST10 Pichia stipitis CBS 6054 putative zinc-finger protein XP_001385835.2 694100 R 322104 CDS PICST_61942 126137926 4840287 <700611..>701750 1 NC_009046.1 3-prime end of ExtraCellular Mutant protein (PST1); 3-prime end of ExtraCellular Mutant protein >701750 ECM33 4840287 ECM33 Pichia stipitis CBS 6054 3-prime end of ExtraCellular Mutant protein XP_001385486.1 <700611 D 322104 CDS PICST_62311 150866290 4840365 complement(702164..703048) 1 NC_009046.1 lipoate biosynthesis protein; go_function: catalytic activity; go_process: protein modification; Lipoyltransferase (LIP2) 703048 LAB2 4840365 LAB2 Pichia stipitis CBS 6054 Lipoyltransferase (LIP2) XP_001385836.2 702164 R 322104 CDS PICST_62745 150866022 4840288 join(<703925..704062,704102..704524,704606..705628) 1 NC_009046.1 predicted protein 705628 4840288 PICST_62745 Pichia stipitis CBS 6054 predicted protein XP_001385487.2 <703925 D 322104 CDS PICST_90569 150866023 4840366 705916..706878 1 NC_009046.1 predicted protein 706878 4840366 PICST_90569 Pichia stipitis CBS 6054 predicted protein XP_001385488.2 705916 D 322104 CDS PICST_32818 150866024 4840367 join(707461..707496,707718..708344) 1 NC_009046.1 predicted protein 708344 4840367 PICST_32818 Pichia stipitis CBS 6054 predicted protein XP_001385489.2 707461 D 322104 CDS PICST_48852 150866291 4840339 complement(708538..>708858) 1 NC_009046.1 predicted protein >708858 4840339 PICST_48852 Pichia stipitis CBS 6054 predicted protein XP_001385837.2 708538 R 322104 CDS PICST_73005 150866025 4840289 join(709508..709568,710099..711807) 1 NC_009046.1 go_component: clathrin coat of trans-Golgi network vesicle; Golgi stack; go_function: protein transporter activity; go_process: intracellular protein transport; protein complex assembly; intra-Golgi transport; predicted protein 711807 4840289 PICST_73005 Pichia stipitis CBS 6054 predicted protein XP_001385490.2 709508 D 322104 CDS PICST_84683 150866292 4840340 complement(712214..713149) 1 NC_009046.1 hypothetical protein 713149 4840340 PICST_84683 Pichia stipitis CBS 6054 hypothetical protein XP_001385838.2 712214 R 322104 CDS PICST_73482 150866293 4840290 complement(713882..714397) 1 NC_009046.1 predicted protein 714397 4840290 PICST_73482 Pichia stipitis CBS 6054 predicted protein XP_001385839.2 713882 R 322104 CDS PICST_11073 150866026 4840291 <715416..>716609 1 NC_009046.1 predicted protein >716609 4840291 PICST_11073 Pichia stipitis CBS 6054 predicted protein XP_001385491.2 <715416 D 322104 CDS PICST_68080 150866027 4840341 717801..718508 1 NC_009046.1 predicted protein 718508 4840341 PICST_68080 Pichia stipitis CBS 6054 predicted protein XP_001385492.2 717801 D 322104 CDS PICST_90476 150866294 4840342 complement(718920..719408) 1 NC_009046.1 go_component: mitochondrial membrane; integral to membrane; go_function: heme binding; go_process: tricarboxylic acid cycle; electron transport; succinate dehydrogenase membrane anchor subunit 719408 SDH4 4840342 SDH4 Pichia stipitis CBS 6054 succinate dehydrogenase membrane anchor subunit XP_001385840.2 718920 R 322104 CDS PICST_62527 150866295 4840292 complement(join(719987..720549,720562..>721321)) 1 NC_009046.1 predicted protein 720549 4840292 PICST_62527 Pichia stipitis CBS 6054 predicted protein XP_001385841.2 719987 R 322104 CDS PICST_32827 150866028 4840293 721672..722745 1 NC_009046.1 go_function: metal ion binding; predicted protein 722745 4840293 PICST_32827 Pichia stipitis CBS 6054 predicted protein XP_001385493.2 721672 D 322104 CDS PICST_32828 150866296 4840343 complement(722905..723771) 1 NC_009046.1 predicted protein 723771 4840343 PICST_32828 Pichia stipitis CBS 6054 predicted protein XP_001385842.2 722905 R 322104 CDS PICST_32829 150866029 4840294 724408..725970 1 NC_009046.1 predicted protein 725970 4840294 PICST_32829 Pichia stipitis CBS 6054 predicted protein XP_001385494.2 724408 D 322104 CDS PICST_61790 150866297 4840344 complement(726223..726561) 1 NC_009046.1 predicted protein 726561 4840344 PICST_61790 Pichia stipitis CBS 6054 predicted protein XP_001385843.2 726223 R 322104 CDS PICST_32831 150866030 4840295 727868..728914 1 NC_009046.1 go_process: oxygen transport; hypothetical protein 728914 4840295 PICST_32831 Pichia stipitis CBS 6054 hypothetical protein XP_001385495.2 727868 D 322104 CDS PICST_68082 150866031 4840345 730279..734493 1 NC_009046.1 bud neck involved extremely serine rich protein; bud neck involved protein 734493 BNI4 4840345 BNI4 Pichia stipitis CBS 6054 bud neck involved protein XP_001385496.2 730279 D 322104 CDS PICST_62408 150866298 4840346 complement(734748..734975) 1 NC_009046.1 hypothetical protein 734975 4840346 PICST_62408 Pichia stipitis CBS 6054 hypothetical protein XP_001385844.2 734748 R 322104 CDS PICST_84802 126137948 4840296 735263..736147 1 NC_009046.1 Represses the replication of double-stranded RNA viruses, protecting the host from the otherwise lethal effects of the virus; exosome 3'->5 exonuclease subunit ski4 (Csl4) 736147 CSL4 4840296 CSL4 Pichia stipitis CBS 6054 exosome 3'->5 exonuclease subunit ski4 (Csl4) XP_001385497.1 735263 D 322104 CDS PICST_32834 150866299 4840347 complement(join(736424..737408,737442..737479)) 1 NC_009046.1 predicted protein 737479 4840347 PICST_32834 Pichia stipitis CBS 6054 predicted protein XP_001385845.2 736424 R 322104 CDS PICST_32835 126137950 4840297 738956..739399 1 NC_009046.1 go_function: molecular function unknown; conserved hypothetical protein 739399 4840297 PICST_32835 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385498.1 738956 D 322104 CDS PICST_62870 150866300 4840348 complement(739572..>740636) 1 NC_009046.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; conserved hypothetical protein >740636 4840348 PICST_62870 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385846.2 739572 R 322104 CDS PICST_61628 150866032 4840046 741127..743370 1 NC_009046.1 related to the helicase subunit of the Holliday junction resolvase; go_component: nucleus; go_function: ATP binding; nucleic acid binding; zinc ion binding; DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1) DNA-directed DNA polymerase ATPase 743370 MGS1 4840046 MGS1 Pichia stipitis CBS 6054 DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1) DNA-directed DNA polymerase ATPase XP_001385499.2 741127 D 322104 CDS PICST_32838 150866033 4840349 743748..745220 1 NC_009046.1 putative Nucleolar GTPase/ATPase 745220 4840349 PICST_32838 Pichia stipitis CBS 6054 putative Nucleolar GTPase/ATPase XP_001385500.2 743748 D 322104 CDS PICST_48297 150866034 4840350 <745882..746799 1 NC_009046.1 hypothetical protein 746799 4840350 PICST_48297 Pichia stipitis CBS 6054 hypothetical protein XP_001385501.2 <745882 D 322104 CDS PICST_84865 126137958 4840351 746988..747911 1 NC_009046.1 mitochondrial ribosome small subunit component 747911 RSM24 4840351 RSM24 Pichia stipitis CBS 6054 mitochondrial ribosome small subunit component XP_001385502.1 746988 D 322104 CDS PICST_36687 150866035 4840352 749704..751551 1 NC_009046.1 Histone acetyltransferase transcription factor involved in glucose repression of GAL4p-regulated transcription; Histone acetyltransferase transcription factor 751551 NGG1 4840352 NGG1 Pichia stipitis CBS 6054 Histone acetyltransferase transcription factor XP_001385503.2 749704 D 322104 CDS PICST_32842 150866036 4840353 752161..753945 1 NC_009046.1 hypothetical leucine rich repeat protein 753945 4840353 PICST_32842 Pichia stipitis CBS 6054 hypothetical leucine rich repeat protein XP_001385504.2 752161 D 322104 CDS PICST_32843 150866301 4840354 complement(753989..755794) 1 NC_009046.1 Golgi alpha-1,2- mannosyltransferase 755794 MNN22 4840354 MNN22 Pichia stipitis CBS 6054 Golgi alpha-1,2- mannosyltransferase XP_001385847.2 753989 R 322104 CDS PICST_36688 126138650 4840047 complement(756785..758182) 1 NC_009046.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; mitochondrial processing protease 758182 MAS1 4840047 MAS1 Pichia stipitis CBS 6054 mitochondrial processing protease XP_001385848.1 756785 R 322104 CDS PICST_48682 150866037 4840048 760977..762266 1 NC_009046.1 general RNA polymerase II transcription factor (putative - by similarity); go_function: structural constituent of cytoskeleton; general RNA polymerase II transcription factor 762266 ARP7 4840048 ARP7 Pichia stipitis CBS 6054 general RNA polymerase II transcription factor XP_001385505.2 760977 D 322104 CDS PICST_32846 150866302 4840384 complement(762575..764002) 1 NC_009046.1 go_function: catalytic activity; go_process: metabolism; enoyl-CoA hydratase, mitochondrial 764002 EHO3 4840384 EHO3 Pichia stipitis CBS 6054 enoyl-CoA hydratase, mitochondrial XP_001385849.2 762575 R 322104 CDS PICST_62474 150866303 4840049 complement(join(764828..765310,765332..765845,765879..765997,766031..766359,766396..766609)) 1 NC_009046.1 Autophagy-related protein 21 766609 ATG21 4840049 ATG21 Pichia stipitis CBS 6054 Autophagy-related protein 21 XP_001385850.2 764828 R 322104 CDS PICST_73203 126138656 4840050 complement(767058..767900) 1 NC_009046.1 go_component: integral to membrane; go_function: protein transporter activity; go_process: protein transport; subunit of ER protein- translocation complex 767900 SEC62 4840050 SEC62 Pichia stipitis CBS 6054 subunit of ER protein- translocation complex XP_001385851.1 767058 R 322104 CDS PICST_84532 150866038 4840051 770156..770377 1 NC_009046.1 predicted protein 770377 4840051 PICST_84532 Pichia stipitis CBS 6054 predicted protein XP_001385506.2 770156 D 322104 CDS PICST_90641 150866039 4840385 772383..776627 1 NC_009046.1 go_component: chromatin; nucleus; go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; chromatin binding; go_process: chromatin assembly or disassembly; transcriptional regulator 776627 CHD1 4840385 CHD1 Pichia stipitis CBS 6054 transcriptional regulator XP_001385507.2 772383 D 322104 CDS PICST_90501 126137970 4840386 777604..779502 1 NC_009046.1 go_function: RNA binding; Polyadenylate-binding protein, cytoplasmic and nuclear (Poly(A)-binding protein) (PABP) (ARS consensus binding protein ACBP-67) (Polyadenylate tail-binding protein) 779502 PAB1 4840386 PAB1 Pichia stipitis CBS 6054 Polyadenylate-binding protein, cytoplasmic and nuclear (Poly(A)-binding protein) (PABP) (ARS consensus binding protein ACBP-67) (Polyadenylate tail-binding protein) XP_001385508.1 777604 D 322104 CDS PICST_79118 150866040 4840387 780801..783434 1 NC_009046.1 Trehalose-phosphatase (Trehalose 6-phosphate phosphatase) (TPP); go_function: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; trehalose-phosphatase activity; go_process: trehalose biosynthesis; threalose-6-phosphate phosphatase 783434 TPS2 4840387 TPS2 Pichia stipitis CBS 6054 threalose-6-phosphate phosphatase XP_001385509.2 780801 D 322104 CDS PICST_84806 150866041 4840388 783910..785193 1 NC_009046.1 alcohol acyl transferase 785193 EHT1 4840388 EHT1 Pichia stipitis CBS 6054 alcohol acyl transferase XP_001385510.2 783910 D 322104 CDS PICST_16322 150866042 4840389 join(785792..787406,787443..>787546) 1 NC_009046.1 conserved hypothetical protein with similarity to ROD1 Resistance to o-dinitrobenzene, calcium, and zinc; protein for resistance to o-dinitrobenzene, calcium, and zinc 787406 ROD1 4840389 ROD1 Pichia stipitis CBS 6054 protein for resistance to o-dinitrobenzene, calcium, and zinc XP_001385511.2 785792 D 322104 CDS PICST_36697 150866043 4840390 788164..789087 1 NC_009046.1 go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: nitrogen compound metabolism; nitrilase 789087 NIT1 4840390 NIT1 Pichia stipitis CBS 6054 nitrilase XP_001385512.2 788164 D 322104 CDS PICST_48638 150866044 4840391 791645..794542 1 NC_009046.1 go_function: DNA binding; GTPase activating protein 794542 AGE1 4840391 AGE1 Pichia stipitis CBS 6054 GTPase activating protein XP_001385513.2 791645 D 322104 CDS PICST_62297 150866045 4840392 join(794839..795969,796027..796200) 1 NC_009046.1 Sporulation-specific protein 1 Serine/threonine protein kinase dispensable for mitosis, involved in middle/late stage of meiosis, required for spore wall formation; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Serine/threonine protein kinase 796200 SPS1 4840392 SPS1 Pichia stipitis CBS 6054 Serine/threonine protein kinase XP_001385514.2 794839 D 322104 CDS PICST_68092 150866046 4840368 797303..800617 1 NC_009046.1 hypothetical protein 800617 4840368 PICST_68092 Pichia stipitis CBS 6054 hypothetical protein XP_001385515.2 797303 D 322104 CDS PICST_90087 150866047 4840369 join(801211..803559,803620..804987) 1 NC_009046.1 interacts with Snf1p protein Putative GTPase activating protein; Snf1p protein-interacting protein 804987 SIP3 4840369 SIP3 Pichia stipitis CBS 6054 Snf1p protein-interacting protein XP_001385516.2 801211 D 322104 CDS PICST_78871 126138658 4840370 complement(<805279..805620) 1 NC_009046.1 predicted protein 805620 4840370 PICST_78871 Pichia stipitis CBS 6054 predicted protein XP_001385852.1 <805279 R 322104 CDS PICST_32861 150866304 4840052 complement(806332..807735) 1 NC_009046.1 go_function: monooxygenase activity; go_process: aromatic compound metabolism; COQ6 monooxygenase, coenzyme Q biosynthesis 807735 COQ6 4840052 COQ6 Pichia stipitis CBS 6054 COQ6 monooxygenase, coenzyme Q biosynthesis XP_001385853.2 806332 R 322104 CDS PICST_62209 150866048 4840053 808136..808876 1 NC_009046.1 hypothetical protein 808876 4840053 PICST_62209 Pichia stipitis CBS 6054 hypothetical protein XP_001385517.2 808136 D 322104 CDS PICST_48163 150866305 4840371 complement(808877..811120) 1 NC_009046.1 hypothetical protein 811120 4840371 PICST_48163 Pichia stipitis CBS 6054 hypothetical protein XP_001385854.2 808877 R 322104 CDS PICST_62098 150866049 4840054 join(812141..813321,813403..813550) 1 NC_009046.1 mother-specific HO expression 813550 SHE3 4840054 SHE3 Pichia stipitis CBS 6054 mother-specific HO expression XP_001385518.2 812141 D 322104 CDS PICST_32865 150866306 4840372 complement(813810..815108) 1 NC_009046.1 G-protein beta subunit-like protein containing WD repeats 815108 CAF4 4840372 CAF4 Pichia stipitis CBS 6054 G-protein beta subunit-like protein containing WD repeats XP_001385855.2 813810 R 322104 CDS PICST_68095 150866050 4840055 816666..817823 1 NC_009046.1 go_component: membrane; plasma membrane iron permease 817823 FTR1 4840055 FTR1 Pichia stipitis CBS 6054 plasma membrane iron permease XP_001385519.2 816666 D 322104 CDS PICST_32867 150866051 4840373 818478..820295 1 NC_009046.1 hypothetical protein 820295 4840373 PICST_32867 Pichia stipitis CBS 6054 hypothetical protein XP_001385520.2 818478 D 322104 CDS PICST_47572 150866307 4840374 complement(820678..823371) 1 NC_009046.1 predicted protein 823371 4840374 PICST_47572 Pichia stipitis CBS 6054 predicted protein XP_001385856.2 820678 R 322104 CDS PICST_27944 150866308 4840056 complement(<823411..823584) 1 NC_009046.1 predicted protein 823584 4840056 PICST_27944 Pichia stipitis CBS 6054 predicted protein XP_001385857.2 <823411 R 322104 CDS PICST_68096 150866309 4840057 complement(join(823996..824102,824223..825852)) 1 NC_009046.1 go_component: nucleus; go_function: DNA binding; predicted protein 825852 4840057 PICST_68096 Pichia stipitis CBS 6054 predicted protein XP_001385858.2 823996 R 322104 CDS PICST_32870 150866052 4840058 826690..827301 1 NC_009046.1 predicted protein 827301 4840058 PICST_32870 Pichia stipitis CBS 6054 predicted protein XP_001385521.2 826690 D 322104 CDS PICST_32871 150866053 4840375 827573..828631 1 NC_009046.1 predicted protein 828631 4840375 PICST_32871 Pichia stipitis CBS 6054 predicted protein XP_001385522.2 827573 D 322104 CDS PICST_61948 150866054 4840376 829742..836245 1 NC_009046.1 predicted protein 836245 4840376 PICST_61948 Pichia stipitis CBS 6054 predicted protein XP_001385523.2 829742 D 322104 CDS PICST_48947 150866055 4840377 join(<836660..836838,836920..838918) 1 NC_009046.1 predicted protein 838918 4840377 PICST_48947 Pichia stipitis CBS 6054 predicted protein XP_001385524.2 <836660 D 322104 CDS PICST_61325 150866056 4840378 839135..840175 1 NC_009046.1 3-keto-steroid reductase 840175 ERG27 4840378 ERG27 Pichia stipitis CBS 6054 3-keto-steroid reductase XP_001385525.2 839135 D 322104 CDS PICST_65933 150866310 4840379 complement(join(840220..842889,842911..844647)) 1 NC_009046.1 predicted protein 844647 4840379 PICST_65933 Pichia stipitis CBS 6054 predicted protein XP_001385859.2 840220 R 322104 CDS PICST_7934 150866057 4840059 <845041..>845694 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; go_process: transcription initiation; predicted protein >845694 4840059 PICST_7934 Pichia stipitis CBS 6054 predicted protein XP_001385526.2 <845041 D 322104 CDS PICST_73416 150866311 4840380 complement(845830..847515) 1 NC_009046.1 go_component: signal recognition particle (sensu Eukaryota); go_function: RNA binding; GTP binding; go_process: SRP-dependent cotranslational protein-membrane targeting; protein targeting; Signal recognition particle 54 kDa protein 847515 SRP54 4840380 SRP54 Pichia stipitis CBS 6054 Signal recognition particle 54 kDa protein XP_001385860.2 845830 R 322104 CDS PICST_32878 150866312 4840060 complement(848275..848973) 1 NC_009046.1 predicted protein 848973 4840060 PICST_32878 Pichia stipitis CBS 6054 predicted protein XP_001385861.2 848275 R 322104 CDS PICST_32879 150866313 4840061 complement(852198..854054) 1 NC_009046.1 go_component: integral to membrane; go_function: D-alanyl-D-alanine endopeptidase activity; predicted protein 854054 4840061 PICST_32879 Pichia stipitis CBS 6054 predicted protein XP_001385862.2 852198 R 322104 CDS PICST_32880 150866058 4840062 856936..858060 1 NC_009046.1 predicted protein 858060 4840062 PICST_32880 Pichia stipitis CBS 6054 predicted protein XP_001385527.2 856936 D 322104 CDS PICST_62156 126138010 4840381 join(859625..859688,859761..860473,860552..860806) 1 NC_009046.1 go_function: nucleic acid binding; predicted protein 860806 4840381 PICST_62156 Pichia stipitis CBS 6054 predicted protein XP_001385528.1 859625 D 322104 CDS PICST_48539 150866314 4840382 complement(861118..861651) 1 NC_009046.1 predicted protein 861651 4840382 PICST_48539 Pichia stipitis CBS 6054 predicted protein XP_001385863.2 861118 R 322104 CDS PICST_62838 150866059 4840063 join(861897..862188,862327..862436,862491..862508,862578..863872,863894..864032,864111..864575) 1 NC_009046.1 predicted protein 864575 4840063 PICST_62838 Pichia stipitis CBS 6054 predicted protein XP_001385529.2 861897 D 322104 CDS PICST_25346 150866060 4840383 join(864869..865234,865274..>866407) 1 NC_009046.1 predicted protein 865234 4840383 PICST_25346 Pichia stipitis CBS 6054 predicted protein XP_001385530.2 864869 D 322104 CDS PICST_90212 126138682 4839954 complement(866658..867356) 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 867356 4839954 PICST_90212 Pichia stipitis CBS 6054 predicted protein XP_001385864.1 866658 R 322104 CDS PICST_68100 150866315 4840064 complement(867493..869706) 1 NC_009046.1 predicted protein 869706 4840064 PICST_68100 Pichia stipitis CBS 6054 predicted protein XP_001385865.2 867493 R 322104 CDS PICST_79236 126138686 4840065 complement(870312..870635) 1 NC_009046.1 predicted protein 870635 4840065 PICST_79236 Pichia stipitis CBS 6054 predicted protein XP_001385866.1 870312 R 322104 CDS PICST_32888 150866316 4840066 complement(870999..872936) 1 NC_009046.1 predicted protein 872936 4840066 PICST_32888 Pichia stipitis CBS 6054 predicted protein XP_001385867.2 870999 R 322104 CDS PICST_32889 150866061 4840067 873622..877107 1 NC_009046.1 predicted protein 877107 4840067 PICST_32889 Pichia stipitis CBS 6054 predicted protein XP_001385531.2 873622 D 322104 CDS PICST_90578 126138018 4839955 877254..879749 1 NC_009046.1 AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) 879749 SPB1 4839955 SPB1 Pichia stipitis CBS 6054 AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) XP_001385532.1 877254 D 322104 CDS PICST_32891 150866062 4839956 881101..883440 1 NC_009046.1 hypothetical protein 883440 4839956 PICST_32891 Pichia stipitis CBS 6054 hypothetical protein XP_001385533.2 881101 D 322104 CDS PICST_48616 126138022 4839957 883574..884527 1 NC_009046.1 5',5'''-P-1,P-4-tetraphosphate phosphorylase II (Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase) (AP-4-A phosphorylase) (AP,A phosphorylase) (ATP adenylyltransferase) 884527 APA2 4839957 APA2 Pichia stipitis CBS 6054 5',5'''-P-1,P-4-tetraphosphate phosphorylase II (Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase) (AP-4-A phosphorylase) (AP,A phosphorylase) (ATP adenylyltransferase) XP_001385534.1 883574 D 322104 CDS PICST_73333 126138024 4839958 join(884796..884923,884980..885226) 1 NC_009046.1 Ubiquinol-cytochrome c reductase complex 14 kDa protein (Complex III subunit VII) (QCR7); go_function: ubiquinol-cytochrome-c reductase activity; go_process: electron transport; mitochondrial electron transport, ubiquinol to cytochrome c; Ubiquinol-cytochrome c reductase complex 14 kDa protein (Complex III subunit VII) 885226 UCR7 4839958 UCR7 Pichia stipitis CBS 6054 Ubiquinol-cytochrome c reductase complex 14 kDa protein (Complex III subunit VII) XP_001385535.1 884796 D 322104 CDS PICST_78946 126138690 4839959 complement(885568..886380) 1 NC_009046.1 go_component: membrane; go_function: binding; go_process: transport; mitochondrial dicarboxylate transport protein 886380 DIC1 4839959 DIC1 Pichia stipitis CBS 6054 mitochondrial dicarboxylate transport protein XP_001385868.1 885568 R 322104 CDS PICST_32901 150866317 4840068 complement(join(916531..916894,916952..919352,921537..921566,922750..922754,923734..923735,923837..923923)) 1 NC_009046.1 predicted protein 923923 4840068 PICST_32901 Pichia stipitis CBS 6054 predicted protein XP_001385869.2 916531 R 322104 CDS PICST_32903 150866063 4840069 924779..926044 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 926044 4840069 PICST_32903 Pichia stipitis CBS 6054 predicted protein XP_001385536.2 924779 D 322104 CDS PICST_32904 150866318 4839960 complement(926736..927989) 1 NC_009046.1 longevity-assurance protein Acyl-CoA-dependent ceramide synthase; go_component: integral to membrane; Acyl-CoA-dependent ceramide synthase 927989 LAG1.1 4839960 LAG1.1 Pichia stipitis CBS 6054 Acyl-CoA-dependent ceramide synthase XP_001385870.2 926736 R 322104 CDS PICST_32905 150866064 4840070 928695..930122 1 NC_009046.1 go_process: intracellular protein transport; predicted protein 930122 4840070 PICST_32905 Pichia stipitis CBS 6054 predicted protein XP_001385537.2 928695 D 322104 CDS PICST_48995 150866065 4839961 930276..930572 1 NC_009046.1 predicted protein 930572 4839961 PICST_48995 Pichia stipitis CBS 6054 predicted protein XP_001385538.2 930276 D 322104 CDS PICST_48821 126138696 4839962 complement(930683..931483) 1 NC_009046.1 go_component: F-actin capping protein complex; go_function: actin binding; go_process: actin cytoskeleton organization and biogenesis; predicted protein 931483 4839962 PICST_48821 Pichia stipitis CBS 6054 predicted protein XP_001385871.1 930683 R 322104 CDS PICST_32908 150866319 4840071 complement(931859..936967) 1 NC_009046.1 Ubiquitin fusion degradation protein 4; go_component: intracellular; go_function: ubiquitin-protein ligase activity; go_process: protein modification; ubiquitin cycle; ubiquitin--protein ligase 936967 UFD4 4840071 UFD4 Pichia stipitis CBS 6054 ubiquitin--protein ligase XP_001385872.2 931859 R 322104 CDS PICST_61879 126138700 4840072 complement(937466..939037) 1 NC_009046.1 Transporter of Nicotinic Acid 939037 TNA13 4840072 TNA13 Pichia stipitis CBS 6054 Transporter of Nicotinic Acid XP_001385873.1 937466 R 322104 CDS PICST_62786 150866066 4840034 join(940708..940938,940960..>942162) 1 NC_009046.1 Splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle; pre-mRNA processing protein 940938 PRP40 4840034 PRP40 Pichia stipitis CBS 6054 pre-mRNA processing protein XP_001385539.2 940708 D 322104 CDS PICST_49017 126138034 4839963 <943130..943645 1 NC_009046.1 go_component: cytoskeleton; go_process: actin filament polymerization; Arp complex subunit 943645 ARC19 4839963 ARC19 Pichia stipitis CBS 6054 Arp complex subunit XP_001385540.1 <943130 D 322104 CDS PICST_24259 150866320 4839964 complement(join(<944174..944329,944369..946557,946651..>946942)) 1 NC_009046.1 transcriptional activator for allantoin and GABA catabolic genes; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal specific transcription factor 946557 DAL81 4839964 DAL81 Pichia stipitis CBS 6054 Fungal specific transcription factor XP_001385874.2 <944174 R 322104 CDS PICST_90672 150866321 4840035 complement(949064..950155) 1 NC_009046.1 DHHC-type heme binding zing finger protein; go_function: metal ion binding; Heme Binding Zinc finger protein 950155 HBZ1 4840035 HBZ1 Pichia stipitis CBS 6054 Heme Binding Zinc finger protein XP_001385875.2 949064 R 322104 CDS PICST_36727 150866067 4840036 join(951345..951678,951721..952484) 1 NC_009046.1 predicted protein 952484 4840036 PICST_36727 Pichia stipitis CBS 6054 predicted protein XP_001385541.2 951345 D 322104 CDS PICST_65944 150866068 4839965 join(953230..953384,953526..954933) 1 NC_009046.1 N2,N2-dimethylguanosine-specific
tRNA methyltransferase [; go_function: RNA binding; tRNA (guanine-N2-)-methyltransferase activity; go_process: tRNA processing; tRNA (guanine-N2-)-methyltransferase 954933 TRM3 4839965 TRM3 Pichia stipitis CBS 6054 tRNA (guanine-N2-)-methyltransferase XP_001385542.2 953230 D 322104 CDS PICST_32916 150866069 4839966 958530..959552 1 NC_009046.1 Cruciform cutting endonuclease 1, mitochondrial precursor; cruciform cutting endonuclease 959552 CCE1 4839966 CCE1 Pichia stipitis CBS 6054 cruciform cutting endonuclease XP_001385543.2 958530 D 322104 CDS PICST_62046 150866322 4839967 complement(<960019..>961626) 1 NC_009046.1 phosphopantothenoylcysteine decarboxylase >961626 PCD1.1 4839967 PCD1.1 Pichia stipitis CBS 6054 phosphopantothenoylcysteine decarboxylase XP_001385876.2 <960019 R 322104 CDS PICST_36729 126138042 4840037 963262..963762 1 NC_009046.1 signal peptidase subunit; go_function: serine-type peptidase activity; go_process: proteolysis and peptidolysis; Signal sequence processing protein 963762 SEC11 4840037 SEC11 Pichia stipitis CBS 6054 Signal sequence processing protein XP_001385544.1 963262 D 322104 CDS PICST_49034 150866070 4839914 965331..966101 1 NC_009046.1 go_function: oxidoreductase activity; go_process: metabolism; 3-oxoacyl-[acyl- carrier-protein] reductase 966101 OAR1 4839914 OAR1 Pichia stipitis CBS 6054 3-oxoacyl-[acyl- carrier-protein] reductase XP_001385545.2 965331 D 322104 CDS PICST_62836 150866323 4839915 complement(966179..968080) 1 NC_009046.1 MCP-domain signal transduction protein 968080 4839915 PICST_62836 Pichia stipitis CBS 6054 MCP-domain signal transduction protein XP_001385877.2 966179 R 322104 CDS PICST_48346 150866071 4840038 <968531..969979 1 NC_009046.1 predicted protein 969979 4840038 PICST_48346 Pichia stipitis CBS 6054 predicted protein XP_001385546.2 <968531 D 322104 CDS PICST_36730 150866324 4839916 complement(970044..971468) 1 NC_009046.1 protein involved in bud site selection 971468 BUD22 4839916 BUD22 Pichia stipitis CBS 6054 protein involved in bud site selection XP_001385878.2 970044 R 322104 CDS PICST_32922 150866072 4840039 971788..973050 1 NC_009046.1 predicted protein 973050 4840039 PICST_32922 Pichia stipitis CBS 6054 predicted protein XP_001385547.2 971788 D 322104 CDS PICST_79049 126138712 4839917 complement(973255..973758) 1 NC_009046.1 go_component: cytoplasm; go_function: molecular function unknown; Translationally controlled tumor protein homolog (TCTP) 973758 TCT1 4839917 TCT1 Pichia stipitis CBS 6054 Translationally controlled tumor protein homolog (TCTP) XP_001385879.1 973255 R 322104 CDS PICST_84390 150866325 4840040 complement(974280..976838) 1 NC_009046.1 go_component: membrane; go_function: serine-type peptidase activity; dipeptidyl-peptidase IV activity; go_process: proteolysis and peptidolysis; dipeptidyl aminopeptidase B 976838 DAP2 4840040 DAP2 Pichia stipitis CBS 6054 dipeptidyl aminopeptidase B XP_001385880.2 974280 R 322104 CDS PICST_84973 150866326 4840041 complement(join(977761..978944,979158..980762,980787..981504)) 1 NC_009046.1 Sensory transduction histidine kinase; go_component: membrane; go_function: two-component response regulator activity; DNA binding; two-component sensor molecule activity; ATP binding; go_process: two-component signal transduction system (phosphorelay); regulation of transcription, DNA-dependent; signal transduction; histidine kinase osmosensor Osmolarity two-component system protein SLN1 981504 SLN1 4840041 SLN1 Pichia stipitis CBS 6054 histidine kinase osmosensor Osmolarity two-component system protein SLN1 XP_001385881.2 977761 R 322104 CDS PICST_17474 150866327 4840042 complement(join(<990088..990216,990258..990269,990481..990926,992982..994134)) 1 NC_009046.1 hyphally regulated cell wall protein 994134 HYR5.1 4840042 HYR5.1 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001385882.2 <990088 R 322104 CDS PICST_68115 126138720 4840043 complement(998091..999638) 1 NC_009046.1 predicted protein 999638 4840043 PICST_68115 Pichia stipitis CBS 6054 predicted protein XP_001385883.1 998091 R 322104 CDS PICST_48184 150866328 4840044 complement(999986..>1000897) 1 NC_009046.1 go_function: N-acetyltransferase activity; predicted protein >1000897 4840044 PICST_48184 Pichia stipitis CBS 6054 predicted protein XP_001385884.2 999986 R 322104 CDS PICST_61419 150866073 4840045 1004090..1005073 1 NC_009046.1 go_function: hydrolase activity; predicted protein 1005073 4840045 PICST_61419 Pichia stipitis CBS 6054 predicted protein XP_001385548.2 1004090 D 322104 CDS PICST_32931 150866074 4839918 1005397..1006272 1 NC_009046.1 predicted protein 1006272 4839918 PICST_32931 Pichia stipitis CBS 6054 predicted protein XP_001385549.2 1005397 D 322104 CDS PICST_68117 150866329 4839919 complement(1007893..1009644) 1 NC_009046.1 Up in StarVation Zn-finger strongly conserved (RGM1); go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; Up in starvation 1009644 USV1 4839919 USV1 Pichia stipitis CBS 6054 Up in starvation XP_001385885.2 1007893 R 322104 CDS PICST_61694 150866330 4839828 complement(join(1013902..1014482,1014591..1014684)) 1 NC_009046.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 1014684 4839828 PICST_61694 Pichia stipitis CBS 6054 predicted protein XP_001385886.2 1013902 R 322104 CDS PICST_47586 126138054 4839829 1015250..1015645 1 NC_009046.1 predicted protein 1015645 4839829 PICST_47586 Pichia stipitis CBS 6054 predicted protein XP_001385550.1 1015250 D 322104 CDS PICST_73373 150866075 4839920 join(1016123..1016283,1016353..1018915) 1 NC_009046.1 go_component: microtubule associated complex; go_function: motor activity; ATP binding; predicted protein 1018915 4839920 PICST_73373 Pichia stipitis CBS 6054 predicted protein XP_001385551.2 1016123 D 322104 CDS PICST_84817 150866076 4839921 join(1019673..1020854,1021011..1021130,1021230..1021634) 1 NC_009046.1 predicted protein 1021634 4839921 PICST_84817 Pichia stipitis CBS 6054 predicted protein XP_001385552.2 1019673 D 322104 CDS PICST_32937 150866331 4839922 complement(1021745..1023229) 1 NC_009046.1 predicted protein 1023229 4839922 PICST_32937 Pichia stipitis CBS 6054 predicted protein XP_001385887.2 1021745 R 322104 CDS PICST_90190 126138730 4839830 complement(1023543..1025252) 1 NC_009046.1 predicted protein 1025252 4839830 PICST_90190 Pichia stipitis CBS 6054 predicted protein XP_001385888.1 1023543 R 322104 CDS PICST_61434 150866332 4839831 complement(join(1027665..1027765,1027796..1028252,1028292..>1028411)) 1 NC_009046.1 zf-C2H2 Zinc finger, C2H2 type calcineurin responsive zinc-finger; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; calcineurin responsive zinc-finger 1028252 CRZ2 4839831 CRZ2 Pichia stipitis CBS 6054 calcineurin responsive zinc-finger XP_001385889.2 1027665 R 322104 CDS PICST_32941 150866333 4839832 complement(join(1031111..1031171,1031235..1031352,1031649..1031772)) 1 NC_009046.1 predicted protein 1031772 4839832 PICST_32941 Pichia stipitis CBS 6054 predicted protein XP_001385890.2 1031111 R 322104 CDS PICST_62778 150866077 4839833 1031893..1033407 1 NC_009046.1 Permease of the major facilitator superfamily; putative allantoate permease 1033407 DAL1 4839833 DAL1 Pichia stipitis CBS 6054 putative allantoate permease XP_001385553.2 1031893 D 322104 CDS PICST_84906 126138736 4839923 complement(1033613..1034371) 1 NC_009046.1 predicted protein 1034371 4839923 PICST_84906 Pichia stipitis CBS 6054 predicted protein XP_001385891.1 1033613 R 322104 CDS PICST_32944 150866334 4839834 complement(1037634..1038623) 1 NC_009046.1 predicted protein 1038623 4839834 PICST_32944 Pichia stipitis CBS 6054 predicted protein XP_001385892.2 1037634 R 322104 CDS PICST_48085 150866078 4839835 1041748..>1042710 1 NC_009046.1 go_component: membrane; go_function: mating-type factor pheromone receptor activity; predicted protein >1042710 4839835 PICST_48085 Pichia stipitis CBS 6054 predicted protein XP_001385554.2 1041748 D 322104 CDS PICST_32946 150866079 4839924 1044134..1045414 1 NC_009046.1 predicted protein 1045414 4839924 PICST_32946 Pichia stipitis CBS 6054 predicted protein XP_001385555.2 1044134 D 322104 CDS PICST_62788 150866335 4839925 complement(1046593..1048047) 1 NC_009046.1 predicted protein 1048047 4839925 PICST_62788 Pichia stipitis CBS 6054 predicted protein XP_001385893.2 1046593 R 322104 CDS PICST_32948 150866336 4839836 complement(join(1049155..1049595,1049776..1049838)) 1 NC_009046.1 predicted protein 1049838 4839836 PICST_32948 Pichia stipitis CBS 6054 predicted protein XP_001385894.2 1049155 R 322104 CDS PICST_84833 150866080 4839837 join(1050174..1050593,1050618..1052366) 1 NC_009046.1 predicted protein 1052366 4839837 PICST_84833 Pichia stipitis CBS 6054 predicted protein XP_001385556.2 1050174 D 322104 CDS PICST_62576 126138744 4839926 complement(1052482..>1052694) 1 NC_009046.1 predicted protein >1052694 4839926 PICST_62576 Pichia stipitis CBS 6054 predicted protein XP_001385895.1 1052482 R 322104 CDS PICST_62095 126138746 4839838 complement(1053281..1055152) 1 NC_009046.1 pyruvate decarboxylase [EC:4.1.1.1] [KO:K01568]; pyruvate decarboxylase (PDC6) (PDC3) 1055152 ARO10 4839838 ARO10 Pichia stipitis CBS 6054 pyruvate decarboxylase (PDC6) (PDC3) XP_001385896.1 1053281 R 322104 CDS PICST_61269 150866081 4839839 join(<1057153..1057267,1057304..1057917) 1 NC_009046.1 tyrosine phosphatase 1057917 SIW14 4839839 SIW14 Pichia stipitis CBS 6054 tyrosine phosphatase XP_001385557.2 <1057153 D 322104 CDS PICST_32952 150866337 4839927 complement(1058212..1058670) 1 NC_009046.1 predicted protein 1058670 4839927 PICST_32952 Pichia stipitis CBS 6054 predicted protein XP_001385897.2 1058212 R 322104 CDS PICST_73330 126138750 4839840 complement(1058973..1059383) 1 NC_009046.1 go_function: DNA binding; predicted protein 1059383 4839840 PICST_73330 Pichia stipitis CBS 6054 predicted protein XP_001385898.1 1058973 R 322104 CDS PICST_90470 126138070 4839841 1060485..1060796 1 NC_009046.1 go_function: DNA binding; predicted protein 1060796 4839841 PICST_90470 Pichia stipitis CBS 6054 predicted protein XP_001385558.1 1060485 D 322104 CDS PICST_47835 150866338 4840172 complement(1060982..>1062421) 1 NC_009046.1 Putative mannosyltransferase of the KRE2 family; go_component: membrane; go_function: glycolipid 2-alpha-mannosyltransferase activity; go_process: protein amino acid glycosylation; mannosyltransferase of the KRE2 family >1062421 KTR5 4840172 KTR5 Pichia stipitis CBS 6054 mannosyltransferase of the KRE2 family XP_001385899.2 1060982 R 322104 CDS PICST_47597 150866339 4839842 complement(1063330..>1064325) 1 NC_009046.1 Suppressor of Defective Silencing 3Functions are similar to those of SIN3 and RPD3; histone deacetylase and transcriptional regulator >1064325 SDS3 4839842 SDS3 Pichia stipitis CBS 6054 histone deacetylase and transcriptional regulator XP_001385900.2 1063330 R 322104 CDS PICST_47700 150866082 4839843 1065085..1065807 1 NC_009046.1 predicted protein 1065807 4839843 PICST_47700 Pichia stipitis CBS 6054 predicted protein XP_001385559.2 1065085 D 322104 CDS PICST_62621 150866083 4840173 <1066540..>1067469 1 NC_009046.1 go_function: N-acetyltransferase activity; predicted protein >1067469 4840173 PICST_62621 Pichia stipitis CBS 6054 predicted protein XP_001385560.2 <1066540 D 322104 CDS PICST_90563 150866340 4840174 complement(1068565..1075200) 1 NC_009046.1 Carbamoyl-phosphate synthase; go_component: cytoplasm; go_function: catalytic activity; amino acid binding; carboxyl- and carbamoyltransferase activity; ligase activity; carbamoyl-phosphate synthase activity; ATP binding; go_process: amino acid metabolism; metabolism; nitrogen compound metabolism; arginine biosynthesis; pyrimidine base biosynthesis; multifunctional pyrimidine biosynthesis protein (PYR1) 1075200 URA2 4840174 URA2 Pichia stipitis CBS 6054 multifunctional pyrimidine biosynthesis protein (PYR1) XP_001385901.2 1068565 R 322104 CDS PICST_61578 150866084 4839844 join(1077577..1078217,1078245..1078492,1078568..1080577,1080608..1080703,1080905..1080984) 1 NC_009046.1 go_function: cation transporter activity; go_process: cation transport; low affinity potassium transporter 1080984 TRK1 4839844 TRK1 Pichia stipitis CBS 6054 low affinity potassium transporter XP_001385561.2 1077577 D 322104 CDS PICST_90419 150866341 4840175 complement(1081245..1082096) 1 NC_009046.1 predicted protein 1082096 4840175 PICST_90419 Pichia stipitis CBS 6054 predicted protein XP_001385902.2 1081245 R 322104 CDS PICST_68130 150866342 4839845 complement(1083778..1085094) 1 NC_009046.1 hypothetical beta-1,6-N-acetylglucosaminyltransferase 1085094 VHS2 4839845 VHS2 Pichia stipitis CBS 6054 hypothetical beta-1,6-N-acetylglucosaminyltransferase XP_001385903.2 1083778 R 322104 CDS PICST_84674 150866085 4839846 join(1088152..1088579,1088631..1092162) 1 NC_009046.1 predicted protein 1092162 4839846 PICST_84674 Pichia stipitis CBS 6054 predicted protein XP_001385562.2 1088152 D 322104 CDS PICST_7220 150866343 4840176 complement(join(<1092399..1092583,1092668..>1092974)) 1 NC_009046.1 predicted protein 1092583 4840176 PICST_7220 Pichia stipitis CBS 6054 predicted protein XP_001385904.2 <1092399 R 322104 CDS PICST_84607 126138080 4839847 1093760..1094569 1 NC_009046.1 predicted protein 1094569 4839847 PICST_84607 Pichia stipitis CBS 6054 predicted protein XP_001385563.1 1093760 D 322104 CDS PICST_32966 150866344 4840177 complement(1094725..1096476) 1 NC_009046.1 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain 1096476 RBP4 4840177 RBP4 Pichia stipitis CBS 6054 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain XP_001385905.2 1094725 R 322104 CDS PICST_32967 150866086 4839848 join(1097745..1097780,1098055..1099494) 1 NC_009046.1 go_component: integral to membrane; go_function: molecular function unknown; predicted protein 1099494 4839848 PICST_32967 Pichia stipitis CBS 6054 predicted protein XP_001385564.2 1097745 D 322104 CDS PICST_32968 150866087 4840178 1101545..1103935 1 NC_009046.1 predicted protein 1103935 4840178 PICST_32968 Pichia stipitis CBS 6054 predicted protein XP_001385565.2 1101545 D 322104 CDS PICST_84956 150866088 4840179 join(1107123..1107524,1107621..1107814,1107977..1108652,1108707..1109900) 1 NC_009046.1 Zn-finger domain highly conserved has 105 hits in genome; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 1109900 NAF2.2 4840179 NAF2.2 Pichia stipitis CBS 6054 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain XP_001385566.2 1107123 D 322104 CDS PICST_68134 126138088 4840180 1110912..1111574 1 NC_009046.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 1111574 4840180 PICST_68134 Pichia stipitis CBS 6054 predicted protein XP_001385567.1 1110912 D 322104 CDS PICST_32971 126138766 4840181 complement(join(1111897..1112322,1112467..1112469)) 1 NC_009046.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein 1112469 4840181 PICST_32971 Pichia stipitis CBS 6054 predicted protein XP_001385906.1 1111897 R 322104 CDS PICST_32972 126138090 4839849 1112681..1113124 1 NC_009046.1 Predicted mutarotase 1113124 MTR1 4839849 MTR1 Pichia stipitis CBS 6054 Predicted mutarotase XP_001385568.1 1112681 D 322104 CDS PICST_68135 150866345 4840182 complement(1113898..1115181) 1 NC_009046.1 cyclin-like protein 1115181 CLG1 4840182 CLG1 Pichia stipitis CBS 6054 cyclin-like protein XP_001385907.2 1113898 R 322104 CDS PICST_61268 126138770 4839850 complement(1121610..1122077) 1 NC_009046.1 go_component: cytoskeleton; go_process: regulation of actin filament polymerization; predicted protein 1122077 4839850 PICST_61268 Pichia stipitis CBS 6054 predicted protein XP_001385908.1 1121610 R 322104 CDS PICST_9444 126138772 4839851 complement(<1122885..1123199) 1 NC_009046.1 predicted protein 1123199 4839851 PICST_9444 Pichia stipitis CBS 6054 predicted protein XP_001385909.1 <1122885 R 322104 CDS PICST_84923 126138774 4839852 complement(1123581..1125242) 1 NC_009046.1 phosphoglucoisomerase upregulated 2-3 fold on XOL relative to XA; go_function: glucose-6-phosphate isomerase activity; go_process: gluconeogenesis; glycolysis; phosphoglucoisomerase 1125242 PGI1 4839852 PGI1 Pichia stipitis CBS 6054 phosphoglucoisomerase XP_001385910.1 1123581 R 322104 CDS PICST_32978 150866089 4839853 1126373..1127338 1 NC_009046.1 predicted protein 1127338 4839853 PICST_32978 Pichia stipitis CBS 6054 predicted protein XP_001385569.2 1126373 D 322104 CDS PICST_32979 150866090 4840183 1128647..1129840 1 NC_009046.1 predicted protein 1129840 4840183 PICST_32979 Pichia stipitis CBS 6054 predicted protein XP_001385570.2 1128647 D 322104 CDS PICST_47947 150866091 4840184 join(<1130691..1131060,1131283..1132886) 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1132886 4840184 PICST_47947 Pichia stipitis CBS 6054 predicted protein XP_001385571.2 <1130691 D 322104 CDS PICST_61569 126138776 4840185 complement(1132952..>1134421) 1 NC_009046.1 go_component: membrane; go_function: cation transporter activity; go_process: cation transport; cation efflux family protein >1134421 CEF1 4840185 CEF1 Pichia stipitis CBS 6054 cation efflux family protein XP_001385911.1 1132952 R 322104 CDS PICST_62437 150866346 4839854 complement(1136774..1137916) 1 NC_009046.1 predicted protein 1137916 4839854 PICST_62437 Pichia stipitis CBS 6054 predicted protein XP_001385912.2 1136774 R 322104 CDS PICST_78999 126138780 4839855 complement(1138463..1139227) 1 NC_009046.1 predicted protein 1139227 4839855 PICST_78999 Pichia stipitis CBS 6054 predicted protein XP_001385913.1 1138463 R 322104 CDS PICST_32984 126138098 4839856 1139664..1140089 1 NC_009046.1 predicted protein 1140089 4839856 PICST_32984 Pichia stipitis CBS 6054 predicted protein XP_001385572.1 1139664 D 322104 CDS PICST_84718 126138100 4839942 1141080..1142531 1 NC_009046.1 go_function: catalytic activity; 3-isopropylmalate dehydratase 1142531 ADE13 4839942 ADE13 Pichia stipitis CBS 6054 3-isopropylmalate dehydratase XP_001385573.1 1141080 D 322104 CDS PICST_62698 150866347 4839943 complement(1142681..1143544) 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1143544 4839943 PICST_62698 Pichia stipitis CBS 6054 predicted protein XP_001385914.2 1142681 R 322104 CDS PICST_78645 150866092 4839814 join(1145508..1145690,1145787..1147611,1147636..1148255) 1 NC_009046.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1148255 4839814 PICST_78645 Pichia stipitis CBS 6054 predicted protein XP_001385574.2 1145508 D 322104 CDS PICST_32988 150866093 4839944 join(1148790..1150413,1150483..>1150658) 1 NC_009046.1 predicted protein 1150413 4839944 PICST_32988 Pichia stipitis CBS 6054 predicted protein XP_001385575.2 1148790 D 322104 CDS PICST_36759 150866348 4839945 complement(join(1150767..1151530,1151588..1151780)) 1 NC_009046.1 protein required for amino acid permease transport from the Golgi to the cell surface 1151780 LST8 4839945 LST8 Pichia stipitis CBS 6054 protein required for amino acid permease transport from the Golgi to the cell surface XP_001385915.2 1150767 R 322104 CDS PICST_84519 150866349 4839815 complement(1152400..1153434) 1 NC_009046.1 go_process: protein folding; Molecular chaperone (DnaJ superfamily) 1153434 SIS1 4839815 SIS1 Pichia stipitis CBS 6054 Molecular chaperone (DnaJ superfamily) XP_001385916.2 1152400 R 322104 CDS PICST_79198 126138788 4839816 complement(1154223..1155263) 1 NC_009046.1 go_function: oxidoreductase activity; go_process: metabolism; beta-hydroxysteroid dehydrogenase type 3 1155263 YBO9 4839816 YBO9 Pichia stipitis CBS 6054 beta-hydroxysteroid dehydrogenase type 3 XP_001385917.1 1154223 R 322104 CDS PICST_32992 150866350 4839817 complement(1155619..1156455) 1 NC_009046.1 predicted protein 1156455 4839817 PICST_32992 Pichia stipitis CBS 6054 predicted protein XP_001385918.2 1155619 R 322104 CDS PICST_32993 150866094 4839818 join(1157016..1158252,1158324..1158337) 1 NC_009046.1 predicted protein 1158337 4839818 PICST_32993 Pichia stipitis CBS 6054 predicted protein XP_001385576.2 1157016 D 322104 CDS PICST_90135 126138792 4839946 complement(1158676..1159608) 1 NC_009046.1 Catalytic subunit of the main cell cycle cyclin-dependent kinase; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; cell division control protein 1159608 CDC28 4839946 CDC28 Pichia stipitis CBS 6054 cell division control protein XP_001385919.1 1158676 R 322104 CDS PICST_73399 126138794 4839819 complement(1160438..1161688) 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine protein kinase 1161688 SAT4 4839819 SAT4 Pichia stipitis CBS 6054 serine/threonine protein kinase XP_001385920.1 1160438 R 322104 CDS PICST_65964 126138108 4839820 1165640..1166413 1 NC_009046.1 go_function: oxidoreductase activity; go_process: metabolism; short-chain dehydrogenase/reductase (SDR) family protein 1166413 SPS22 4839820 SPS22 Pichia stipitis CBS 6054 short-chain dehydrogenase/reductase (SDR) family protein XP_001385577.1 1165640 D 322104 CDS PICST_32997 150866351 4839947 complement(1167599..1168588) 1 NC_009046.1 predicted protein 1168588 4839947 PICST_32997 Pichia stipitis CBS 6054 predicted protein XP_001385921.2 1167599 R 322104 CDS PICST_84858 150866352 4839821 complement(join(1169355..1169695,1169750..1171092,1171204..1171418,1171494..1171748)) 1 NC_009046.1 predicted protein 1171748 4839821 PICST_84858 Pichia stipitis CBS 6054 predicted protein XP_001385922.2 1169355 R 322104 CDS PICST_68146 150866095 4839822 1176726..1179491 1 NC_009046.1 similar to SFL1; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; putative transcription factor 1179491 SFL1 4839822 SFL1 Pichia stipitis CBS 6054 putative transcription factor XP_001385578.2 1176726 D 322104 CDS PICST_48002 150866353 4839948 complement(join(1179780..1180883,1180959..>1183574)) 1 NC_009046.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1180883 4839948 PICST_48002 Pichia stipitis CBS 6054 predicted protein XP_001385923.2 1179780 R 322104 CDS PICST_47614 150866096 4839823 1185240..1186571 1 NC_009046.1 go_function: ATP binding; predicted protein 1186571 4839823 PICST_47614 Pichia stipitis CBS 6054 predicted protein XP_001385579.2 1185240 D 322104 CDS PICST_33002 150866097 4839949 1187668..1190769 1 NC_009046.1 go_component: membrane; go_function: ATP binding; go_process: transport; predicted protein 1190769 4839949 PICST_33002 Pichia stipitis CBS 6054 predicted protein XP_001385580.2 1187668 D 322104 CDS PICST_33003 150866354 4839950 complement(1190871..1191971) 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1191971 4839950 PICST_33003 Pichia stipitis CBS 6054 predicted protein XP_001385924.2 1190871 R 322104 CDS PICST_26987 150866355 4839824 complement(<1194625..>1195386) 1 NC_009046.1 go_component: nucleus; go_function: DNA binding; go_process: nucleosome assembly; predicted protein >1195386 4839824 PICST_26987 Pichia stipitis CBS 6054 predicted protein XP_001385925.2 <1194625 R 322104 CDS PICST_90139 150866098 4839825 1196235..1197767 1 NC_009046.1 predicted protein 1197767 4839825 PICST_90139 Pichia stipitis CBS 6054 predicted protein XP_001385581.2 1196235 D 322104 CDS PICST_62378 126138118 4839951 1198005..1198352 1 NC_009046.1 predicted protein 1198352 4839951 PICST_62378 Pichia stipitis CBS 6054 predicted protein XP_001385582.1 1198005 D 322104 CDS PICST_68148 150866356 4839952 complement(join(1198739..1198819,1199006..1201581,1201675..1202142,1202212..1202761)) 1 NC_009046.1 predicted protein 1202761 4839952 PICST_68148 Pichia stipitis CBS 6054 predicted protein XP_001385926.2 1198739 R 322104 CDS PICST_33008 126138120 4839826 1207231..1208931 1 NC_009046.1 Xylose UpTake (tentative); go_component: integral to membrane; go_function: transporter activity; go_process: transport; sugar transporter, high affinity, putative 1208931 XUT1 4839826 XUT1 Pichia stipitis CBS 6054 sugar transporter, high affinity, putative XP_001385583.1 1207231 D 322104 CDS PICST_68149 150866357 4839953 complement(1211830..1212576) 1 NC_009046.1 predicted protein 1212576 4839953 PICST_68149 Pichia stipitis CBS 6054 predicted protein XP_001385927.2 1211830 R 322104 CDS PICST_84758 150866099 4839827 1214242..1214919 1 NC_009046.1 predicted protein 1214919 4839827 PICST_84758 Pichia stipitis CBS 6054 predicted protein XP_001385584.2 1214242 D 322104 CDS PICST_62165 126138810 4839789 complement(1215149..>1215607) 1 NC_009046.1 predicted protein >1215607 4839789 PICST_62165 Pichia stipitis CBS 6054 predicted protein XP_001385928.1 1215149 R 322104 CDS PICST_33011 150866358 4839857 complement(1216011..1216694) 1 NC_009046.1 predicted protein 1216694 4839857 PICST_33011 Pichia stipitis CBS 6054 predicted protein XP_001385929.2 1216011 R 322104 CDS PICST_33012 150866100 4839858 1217354..1218682 1 NC_009046.1 hydrolyzes inositolphosphosphingolipids (IPC, MIPC, M(IP)2C) as well as sphingomyelin; phospholipase C type enzyme 1218682 ISC1 4839858 ISC1 Pichia stipitis CBS 6054 phospholipase C type enzyme XP_001385585.2 1217354 D 322104 CDS PICST_49071 150866101 4839790 1220640..1225016 1 NC_009046.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 1225016 4839790 PICST_49071 Pichia stipitis CBS 6054 predicted protein XP_001385586.2 1220640 D 322104 CDS PICST_61283 150866359 4839791 complement(1225479..1228472) 1 NC_009046.1 predicted protein 1228472 4839791 PICST_61283 Pichia stipitis CBS 6054 predicted protein XP_001385930.2 1225479 R 322104 CDS PICST_48963 126138128 4839859 1230277..1230678 1 NC_009046.1 predicted protein 1230678 4839859 PICST_48963 Pichia stipitis CBS 6054 predicted protein XP_001385587.1 1230277 D 322104 CDS PICST_84962 150866102 4839792 join(1232233..1232395,1232423..1233129) 1 NC_009046.1 go_function: nucleic acid binding; ribonuclease H activity; predicted protein 1233129 4839792 PICST_84962 Pichia stipitis CBS 6054 predicted protein XP_001385588.2 1232233 D 322104 CDS PICST_90724 150866103 4839793 1234016..1236418 1 NC_009046.1 go_function: lyase activity; hydro-lyase activity; go_process: metabolism; aconitate hydratase 1236418 ACO2 4839793 ACO2 Pichia stipitis CBS 6054 aconitate hydratase XP_001385589.2 1234016 D 322104 CDS PICST_48891 126138816 4839794 complement(1236837..1238363) 1 NC_009046.1 go_component: proton-transporting two-sector ATPase complex; go_function: ATP binding; hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP biosynthesis; Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) 1238363 VMA2 4839794 VMA2 Pichia stipitis CBS 6054 Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) XP_001385931.1 1236837 R 322104 CDS PICST_33019 150866360 4839860 complement(1239082..1240677) 1 NC_009046.1 predicted protein 1240677 4839860 PICST_33019 Pichia stipitis CBS 6054 predicted protein XP_001385932.2 1239082 R 322104 CDS PICST_6302 150866104 4839861 join(<1241794..1242105,1242220..1242517,1242584..>1243005) 1 NC_009046.1 predicted protein 1242517 4839861 PICST_6302 Pichia stipitis CBS 6054 predicted protein XP_001385590.2 <1241794 D 322104 CDS PICST_33021 150866361 4839795 complement(1243227..1244255) 1 NC_009046.1 predicted protein 1244255 4839795 PICST_33021 Pichia stipitis CBS 6054 predicted protein XP_001385933.2 1243227 R 322104 CDS PICST_33022 150866105 4839862 join(1244515..1244562,1244637..1245131) 1 NC_009046.1 predicted protein 1245131 4839862 PICST_33022 Pichia stipitis CBS 6054 predicted protein XP_001385591.2 1244515 D 322104 CDS PICST_36779 150866106 4839796 1246082..1247098 1 NC_009046.1 go_function: catalytic activity; predicted protein 1247098 4839796 PICST_36779 Pichia stipitis CBS 6054 predicted protein XP_001385592.2 1246082 D 322104 CDS PICST_68153 150866107 4839797 join(1248227..1248612,1248632..1248669,1248699..1252969) 1 NC_009046.1 go_function: Ras GTPase activator activity; go_process: small GTPase mediated signal transduction; predicted protein 1252969 4839797 PICST_68153 Pichia stipitis CBS 6054 predicted protein XP_001385593.2 1248227 D 322104 CDS PICST_61362 150866108 4839798 1255932..1256162 1 NC_009046.1 go_function: transcription regulator activity; predicted protein 1256162 4839798 PICST_61362 Pichia stipitis CBS 6054 predicted protein XP_001385594.2 1255932 D 322104 CDS PICST_73391 126138822 4839799 complement(1256628..1258766) 1 NC_009046.1 predicted protein 1258766 4839799 PICST_73391 Pichia stipitis CBS 6054 predicted protein XP_001385934.1 1256628 R 322104 CDS PICST_68156 150866362 4839863 complement(1259528..1262329) 1 NC_009046.1 hypothetical protein 1262329 4839863 PICST_68156 Pichia stipitis CBS 6054 hypothetical protein XP_001385935.2 1259528 R 322104 CDS PICST_61383 126138826 4839864 complement(join(1262851..1263563,1263962..>1264001)) 1 NC_009046.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1263563 4839864 PICST_61383 Pichia stipitis CBS 6054 predicted protein XP_001385936.1 1262851 R 322104 CDS PICST_84430 150866109 4839865 join(1264366..1264404,1264794..1265495,1265541..1266002) 1 NC_009046.1 go_function: metal ion binding; predicted protein 1266002 4839865 PICST_84430 Pichia stipitis CBS 6054 predicted protein XP_001385595.2 1264366 D 322104 CDS PICST_73480 126138146 4839800 1266603..1267268 1 NC_009046.1 predicted protein 1267268 4839800 PICST_73480 Pichia stipitis CBS 6054 predicted protein XP_001385596.1 1266603 D 322104 CDS PICST_33032 126138828 4839801 complement(1267682..1268254) 1 NC_009046.1 predicted protein 1268254 4839801 PICST_33032 Pichia stipitis CBS 6054 predicted protein XP_001385937.1 1267682 R 322104 CDS PICST_68160 150866110 4839866 1269796..1271220 1 NC_009046.1 NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor (NUCM)(NUO); go_function: electron transporter activity; go_process: electron transport; NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor 1271220 NUC1 4839866 NUC1 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial precursor XP_001385597.2 1269796 D 322104 CDS PICST_73208 150866363 4840407 complement(1271451..1272353) 1 NC_009046.1 predicted protein 1272353 4840407 PICST_73208 Pichia stipitis CBS 6054 predicted protein XP_001385938.2 1271451 R 322104 CDS PICST_84844 126138150 4839867 1273835..1274563 1 NC_009046.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 1274563 4839867 PICST_84844 Pichia stipitis CBS 6054 predicted protein XP_001385598.1 1273835 D 322104 CDS PICST_33036 150866364 4840408 complement(1275208..1275762) 1 NC_009046.1 predicted protein 1275762 4840408 PICST_33036 Pichia stipitis CBS 6054 predicted protein XP_001385939.2 1275208 R 322104 CDS PICST_61782 150866365 4839868 complement(join(1276161..1277632,1277663..1278281)) 1 NC_009046.1 predicted protein 1278281 4839868 PICST_61782 Pichia stipitis CBS 6054 predicted protein XP_001385940.2 1276161 R 322104 CDS PICST_36788 150866366 4839869 complement(1279879..1281231) 1 NC_009046.1 go_component: cytoplasm; go_process: apoptosis; conserved hypothetical protein 1281231 4839869 PICST_36788 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385941.2 1279879 R 322104 CDS PICST_62149 150866367 4839870 complement(1281612..>1283489) 1 NC_009046.1 go_function: GTP binding; translation initiation factor activity; go_process: protein biosynthesis; translational initiation; predicted protein >1283489 4839870 PICST_62149 Pichia stipitis CBS 6054 predicted protein XP_001385942.2 1281612 R 322104 CDS PICST_33040 150866368 4839871 complement(join(1284281..1284752,1284798..1285284,1285345..1285697,1286261..1286262,1286396..1286608)) 1 NC_009046.1 go_function: nucleic acid binding; zinc ion binding; predicted protein 1286608 4839871 PICST_33040 Pichia stipitis CBS 6054 predicted protein XP_001385943.2 1284281 R 322104 CDS PICST_47873 150866111 4839802 1288378..>1289724 1 NC_009046.1 predicted protein >1289724 4839802 PICST_47873 Pichia stipitis CBS 6054 predicted protein XP_001385599.2 1288378 D 322104 CDS PICST_33042 150866112 4840409 1291306..1292181 1 NC_009046.1 predicted protein 1292181 4840409 PICST_33042 Pichia stipitis CBS 6054 predicted protein XP_001385600.2 1291306 D 322104 CDS PICST_47790 126138842 4840410 complement(join(1292416..1292818,1293229..1293293,1293445..1293486)) 1 NC_009046.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 1293486 4840410 PICST_47790 Pichia stipitis CBS 6054 predicted protein XP_001385944.1 1292416 R 322104 CDS PICST_78783 126138844 4839803 complement(1293989..1295623) 1 NC_009046.1 go_function: subtilase activity; go_process: proteolysis and peptidolysis; vacuolar protease B 1295623 PRB2 4839803 PRB2 Pichia stipitis CBS 6054 vacuolar protease B XP_001385945.1 1293989 R 322104 CDS PICST_61783 150866369 4839804 complement(1297000..1299153) 1 NC_009046.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 1299153 4839804 PICST_61783 Pichia stipitis CBS 6054 predicted protein XP_001385946.2 1297000 R 322104 CDS PICST_68166 150866370 4839805 complement(1299485..1301614) 1 NC_009046.1 predicted protein 1301614 4839805 PICST_68166 Pichia stipitis CBS 6054 predicted protein XP_001385947.2 1299485 R 322104 CDS PICST_73043 126138156 4839806 1303237..1304811 1 NC_009046.1 go_process: electron transport; cytochrome P450 1304811 ERG5 4839806 ERG5 Pichia stipitis CBS 6054 cytochrome P450 XP_001385601.1 1303237 D 322104 CDS PICST_22975 150866113 4840411 <1305707..>1306069 1 NC_009046.1 go_component: transcription factor complex; go_function: RNA polymerase II transcription factor activity; go_process: transcription initiation; predicted protein >1306069 4840411 PICST_22975 Pichia stipitis CBS 6054 predicted protein XP_001385602.2 <1305707 D 322104 CDS PICST_36794 150866114 4840412 join(1306840..1307760,1308049..1308351,1308395..1308398,1308461..1309902,1309996..1310616) 1 NC_009046.1 predicted protein 1310616 4840412 PICST_36794 Pichia stipitis CBS 6054 predicted protein XP_001385603.2 1306840 D 322104 CDS PICST_90238 150866371 4840413 complement(join(1310859..1310968,1311257..1313612)) 1 NC_009046.1 go_component: membrane; go_function: mannosyltransferase activity; go_process: O-linked glycosylation; predicted protein 1313612 4840413 PICST_90238 Pichia stipitis CBS 6054 predicted protein XP_001385948.2 1310859 R 322104 CDS PICST_73371 150866115 4839807 1316021..1318993 1 NC_009046.1 P-type ATPase involved in Na+ efflux; go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; catalytic activity; go_process: cation transport; metabolism; Na+ ATPase 1318993 ENA5 4839807 ENA5 Pichia stipitis CBS 6054 Na+ ATPase XP_001385604.2 1316021 D 322104 CDS PICST_48268 150866116 4840414 1320486..1322204 1 NC_009046.1 go_function: amidase activity; amidase 1322204 AMD4 4840414 AMD4 Pichia stipitis CBS 6054 amidase XP_001385605.2 1320486 D 322104 CDS PICST_33055 126138166 4840415 1323043..1323582 1 NC_009046.1 predicted protein 1323582 4840415 PICST_33055 Pichia stipitis CBS 6054 predicted protein XP_001385606.1 1323043 D 322104 CDS PICST_48738 150866117 4840416 join(1325101..1325449,1325486..1326882) 1 NC_009046.1 go_function: GTP binding; go_process: protein biosynthesis; predicted protein 1326882 4840416 PICST_48738 Pichia stipitis CBS 6054 predicted protein XP_001385607.2 1325101 D 322104 CDS PICST_61747 150866372 4840417 complement(join(1327022..1327372,1327418..1327806,1327825..1328056)) 1 NC_009046.1 predicted protein 1328056 4840417 PICST_61747 Pichia stipitis CBS 6054 predicted protein XP_001385949.2 1327022 R 322104 CDS PICST_36800 150866373 4839808 complement(1328526..1329290) 1 NC_009046.1 catechol o- methyltransferase (COMT); go_function: O-methyltransferase activity; catechol o- methyltransferase 1329290 COM1 4839808 COM1 Pichia stipitis CBS 6054 catechol o- methyltransferase XP_001385950.2 1328526 R 322104 CDS PICST_33059 150866118 4839809 1330160..1330777 1 NC_009046.1 predicted protein 1330777 4839809 PICST_33059 Pichia stipitis CBS 6054 predicted protein XP_001385608.2 1330160 D 322104 CDS PICST_84971 150866119 4840418 join(1331344..1331713,1331744..1335633) 1 NC_009046.1 go_process: intracellular signaling cascade; predicted protein 1335633 4840418 PICST_84971 Pichia stipitis CBS 6054 predicted protein XP_001385609.2 1331344 D 322104 CDS PICST_33061 150866374 4840419 complement(1335771..1337132) 1 NC_009046.1 go_function: oxidoreductase activity; Gamma-butyrobetaine dioxygenase (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) 1337132 GBO1 4840419 GBO1 Pichia stipitis CBS 6054 Gamma-butyrobetaine dioxygenase (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) XP_001385951.2 1335771 R 322104 CDS PICST_62462 150866120 4839810 1340902..>1343079 1 NC_009046.1 predicted protein >1343079 4839810 PICST_62462 Pichia stipitis CBS 6054 predicted protein XP_001385610.2 1340902 D 322104 CDS PICST_84931 150866375 4840420 complement(1343713..1346862) 1 NC_009046.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1346862 4840420 PICST_84931 Pichia stipitis CBS 6054 predicted protein XP_001385952.2 1343713 R 322104 CDS PICST_33064 150866376 4839811 complement(1347713..1349449) 1 NC_009046.1 predicted protein 1349449 4839811 PICST_33064 Pichia stipitis CBS 6054 predicted protein XP_001385953.2 1347713 R 322104 CDS PICST_48982 126138862 4839812 complement(1350539..1350775) 1 NC_009046.1 go_component: mitochondrial inner membrane; go_function: protein translocase activity; go_process: protein-mitochondrial targeting; predicted protein 1350775 4839812 PICST_48982 Pichia stipitis CBS 6054 predicted protein XP_001385954.1 1350539 R 322104 CDS PICST_84563 150866377 4839813 complement(1351111..1352646) 1 NC_009046.1 asparaginyl-tRNA synthetase (SYNM); go_component: cytoplasm; go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; asparaginyl-tRNA synthetase 1352646 SYN4 4839813 SYN4 Pichia stipitis CBS 6054 asparaginyl-tRNA synthetase XP_001385955.2 1351111 R 322104 CDS PICST_33066 150866121 4840246 1353231..1354199 1 NC_009046.1 histidinolphosphatase (HIS2); histidinolphosphatase 1354199 HIS9 4840246 HIS9 Pichia stipitis CBS 6054 histidinolphosphatase XP_001385611.2 1353231 D 322104 CDS PICST_84407 150866378 4840393 complement(join(1354331..1355908,1355930..1356400)) 1 NC_009046.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; protein biosynthesis; proline-tRNA ligase 1356400 YHI0 4840393 YHI0 Pichia stipitis CBS 6054 proline-tRNA ligase XP_001385956.2 1354331 R 322104 CDS PICST_33068 150866122 4840247 1357807..1359468 1 NC_009046.1 Asparaginyl-tRNA synthetase, cytoplasmic (Asparagine--tRNA ligase) (AsnRS) (SYNC); go_component: cytoplasm; go_function: tRNA ligase activity; ATP binding; nucleic acid binding; go_process: tRNA aminoacylation for protein translation; Asparaginyl-tRNA synthetase, cytoplasmic (Asparagine--tRNA ligase) (AsnRS) 1359468 SYN3 4840247 SYN3 Pichia stipitis CBS 6054 Asparaginyl-tRNA synthetase, cytoplasmic (Asparagine--tRNA ligase) (AsnRS) XP_001385612.2 1357807 D 322104 CDS PICST_62133 150866379 4840394 complement(join(1360260..1360681,1361687..1362422,1362447..1362584)) 1 NC_009046.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; predicted protein 1362584 4840394 PICST_62133 Pichia stipitis CBS 6054 predicted protein XP_001385957.2 1360260 R 322104 CDS PICST_62615 126138180 4840248 1364128..1365522 1 NC_009046.1 go_function: catalytic activity; argininosuccinate lyase 1365522 ARG4 4840248 ARG4 Pichia stipitis CBS 6054 argininosuccinate lyase XP_001385613.1 1364128 D 322104 CDS PICST_33071 150866380 4840395 complement(join(1365637..1367015,1367044..1367173)) 1 NC_009046.1 predicted protein 1367173 4840395 PICST_33071 Pichia stipitis CBS 6054 predicted protein XP_001385958.2 1365637 R 322104 CDS PICST_33072 150866123 4840249 1368589..1370679 1 NC_009046.1 predicted protein 1370679 4840249 PICST_33072 Pichia stipitis CBS 6054 predicted protein XP_001385614.2 1368589 D 322104 CDS PICST_65985 150866124 4840396 1370936..1372993 1 NC_009046.1 predicted protein 1372993 4840396 PICST_65985 Pichia stipitis CBS 6054 predicted protein XP_001385615.2 1370936 D 322104 CDS PICST_62219 150866125 4840397 join(1373374..1374055,1374182..1374384) 1 NC_009046.1 predicted protein 1374384 4840397 PICST_62219 Pichia stipitis CBS 6054 predicted protein XP_001385616.2 1373374 D 322104 CDS PICST_33075 150866381 4840398 complement(1374430..1375137) 1 NC_009046.1 pyrazinamidase Nicotinamidase (Nicotine deamidase) (NAMase); go_function: catalytic activity; go_process: metabolism; NAD(+) salvage pathway gene 1375137 PNC1 4840398 PNC1 Pichia stipitis CBS 6054 NAD(+) salvage pathway gene XP_001385959.2 1374430 R 322104 CDS PICST_33076 150866382 4840250 complement(1375821..1377767) 1 NC_009046.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1377767 4840250 PICST_33076 Pichia stipitis CBS 6054 predicted protein XP_001385960.2 1375821 R 322104 CDS PICST_61764 150866383 4840251 complement(1378049..1379491) 1 NC_009046.1 predicted protein 1379491 4840251 PICST_61764 Pichia stipitis CBS 6054 predicted protein XP_001385961.2 1378049 R 322104 CDS PICST_33078 150866384 4840252 complement(1380077..1381564) 1 NC_009046.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; putative xylose transporter 1381564 XUT5 4840252 XUT5 Pichia stipitis CBS 6054 putative xylose transporter XP_001385962.2 1380077 R 322104 CDS PICST_33080 150866385 4840253 complement(1386486..1389467) 1 NC_009046.1 predicted protein 1389467 4840253 PICST_33080 Pichia stipitis CBS 6054 predicted protein XP_001385963.2 1386486 R 322104 CDS PICST_62390 126138882 4840254 complement(1389744..>1390856) 1 NC_009046.1 go_function: hydrolase activity; Serine/threonine protein phosphatase 2A >1390856 APA4 4840254 APA4 Pichia stipitis CBS 6054 Serine/threonine protein phosphatase 2A XP_001385964.1 1389744 R 322104 CDS PICST_84608 150866386 4840255 complement(join(1391569..1393621,1393640..1393911)) 1 NC_009046.1 GTPase activating protein 1393911 GYP7 4840255 GYP7 Pichia stipitis CBS 6054 GTPase activating protein XP_001385965.2 1391569 R 322104 CDS PICST_36809 150866387 4840256 complement(1394577..1397783) 1 NC_009046.1 Dead-box family helicase required for mRNA export from nucleus ATP-dependent RNA helicase DOB1 (mRNA transport regulator MTR4); go_function: nucleic acid binding; helicase activity; ATP binding; Dead-box family helicase required for mRNA export from nucleus 1397783 MTR4 4840256 MTR4 Pichia stipitis CBS 6054 Dead-box family helicase required for mRNA export from nucleus XP_001385966.2 1394577 R 322104 CDS PICST_33084 150866388 4840257 complement(1398303..1401023) 1 NC_009046.1 predicted protein 1401023 4840257 PICST_33084 Pichia stipitis CBS 6054 predicted protein XP_001385967.2 1398303 R 322104 CDS PICST_36810 126138890 4840258 complement(1402330..1403703) 1 NC_009046.1 go_function: serine carboxypeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1403703 4840258 PICST_36810 Pichia stipitis CBS 6054 predicted protein XP_001385968.1 1402330 R 322104 CDS PICST_48613 150866126 4840259 <1405187..>1406077 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine kinase >1406077 PPR2 4840259 PPR2 Pichia stipitis CBS 6054 serine/threonine kinase XP_001385617.2 <1405187 D 322104 CDS PICST_78806 126138190 4840399 1406626..1408104 1 NC_009046.1 go_function: glycine hydroxymethyltransferase activity; go_process: glycine metabolism; L-serine metabolism; Serine hydroxymethyltransferase, mitochondrial precursor (Serine methylase) 1408104 SHM1 4840399 SHM1 Pichia stipitis CBS 6054 Serine hydroxymethyltransferase, mitochondrial precursor (Serine methylase) XP_001385618.1 1406626 D 322104 CDS PICST_61313 150866127 4840400 join(1408547..1409552,1409589..>1410649) 1 NC_009046.1 predicted protein 1409552 4840400 PICST_61313 Pichia stipitis CBS 6054 predicted protein XP_001385619.2 1408547 D 322104 CDS PICST_48926 150866128 4840401 1410704..1411645 1 NC_009046.1 predicted protein 1411645 4840401 PICST_48926 Pichia stipitis CBS 6054 predicted protein XP_001385620.2 1410704 D 322104 CDS PICST_61406 150866389 4840402 complement(<1411838..>1413076) 1 NC_009046.1 predicted protein >1413076 4840402 PICST_61406 Pichia stipitis CBS 6054 predicted protein XP_001385969.2 <1411838 R 322104 CDS PICST_48631 150866129 4840260 <1414685..>1415983 1 NC_009046.1 predicted protein >1415983 4840260 PICST_48631 Pichia stipitis CBS 6054 predicted protein XP_001385621.2 <1414685 D 322104 CDS PICST_62139 150866390 4840403 complement(join(1416151..1416876,1416904..1417671)) 1 NC_009046.1 predicted protein 1417671 4840403 PICST_62139 Pichia stipitis CBS 6054 predicted protein XP_001385970.2 1416151 R 322104 CDS PICST_62373 150866130 4840261 join(<1422381..1423778,1423806..>1425053) 1 NC_009046.1 predicted protein 1423778 4840261 PICST_62373 Pichia stipitis CBS 6054 predicted protein XP_001385622.2 <1422381 D 322104 CDS PICST_62487 126138200 4840404 1426992..1427612 1 NC_009046.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1427612 4840404 PICST_62487 Pichia stipitis CBS 6054 predicted protein XP_001385623.1 1426992 D 322104 CDS PICST_48365 126138896 4840405 complement(1428008..1428325) 1 NC_009046.1 predicted protein 1428325 4840405 PICST_48365 Pichia stipitis CBS 6054 predicted protein XP_001385971.1 1428008 R 322104 CDS PICST_62137 150866131 4840262 1428630..1429961 1 NC_009046.1 predicted protein 1429961 4840262 PICST_62137 Pichia stipitis CBS 6054 predicted protein XP_001385624.2 1428630 D 322104 CDS PICST_68186 150866391 4840406 complement(1430327..1431073) 1 NC_009046.1 predicted protein 1431073 4840406 PICST_68186 Pichia stipitis CBS 6054 predicted protein XP_001385972.2 1430327 R 322104 CDS PICST_62485 150866132 4840263 1434005..1434934 1 NC_009046.1 Nit protein, nitrilase superfamily member; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: nitrogen compound metabolism; nitrilase superfamily member 1434934 NIT2 4840263 NIT2 Pichia stipitis CBS 6054 nitrilase superfamily member XP_001385625.2 1434005 D 322104 CDS PICST_90317 150866133 4840144 1438177..1439730 1 NC_009046.1 go_function: ATP binding; predicted protein 1439730 4840144 PICST_90317 Pichia stipitis CBS 6054 predicted protein XP_001385626.2 1438177 D 322104 CDS PICST_62497 150866134 4840145 join(1440693..1440942,1440997..>1441916) 1 NC_009046.1 go_component: peroxisome; integral to membrane; go_process: peroxisome matrix protein import, docking; predicted protein 1440942 4840145 PICST_62497 Pichia stipitis CBS 6054 predicted protein XP_001385627.2 1440693 D 322104 CDS PICST_84869 150866392 4840146 complement(join(1442345..1442437,1442495..1442515,1442636..1442862,1442956..1443678,1443706..1443955)) 1 NC_009046.1 predicted protein 1443955 4840146 PICST_84869 Pichia stipitis CBS 6054 predicted protein XP_001385973.2 1442345 R 322104 CDS PICST_48462 150866393 4840264 complement(1444892..1446010) 1 NC_009046.1 predicted protein 1446010 4840264 PICST_48462 Pichia stipitis CBS 6054 predicted protein XP_001385974.2 1444892 R 322104 CDS PICST_78867 150866394 4840265 complement(1446613..1447812) 1 NC_009046.1 predicted protein 1447812 4840265 PICST_78867 Pichia stipitis CBS 6054 predicted protein XP_001385975.2 1446613 R 322104 CDS PICST_33103 150866135 4840266 1448957..1450288 1 NC_009046.1 go_function: oxidoreductase activity; go_process: electron transport; acetyl-coenzyme-A dehydrogenase 1450288 ACD99 4840266 ACD99 Pichia stipitis CBS 6054 acetyl-coenzyme-A dehydrogenase XP_001385628.2 1448957 D 322104 CDS PICST_68190 126138906 4840147 complement(1450584..1451084) 1 NC_009046.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein 1451084 4840147 PICST_68190 Pichia stipitis CBS 6054 predicted protein XP_001385976.1 1450584 R 322104 CDS PICST_65994 150866136 4840267 1452349..1453437 1 NC_009046.1 translational repressor of GCN4 1453437 GCD14 4840267 GCD14 Pichia stipitis CBS 6054 translational repressor of GCN4 XP_001385629.2 1452349 D 322104 CDS PICST_36825 150866137 4840148 join(1454226..1454244,1454690..1455849) 1 NC_009046.1 go_component: actin cytoskeleton; go_function: structural constituent of cytoskeleton; endocytosis and membrane growth and polarity 1455849 ARP2 4840148 ARP2 Pichia stipitis CBS 6054 endocytosis and membrane growth and polarity XP_001385630.2 1454226 D 322104 CDS PICST_47887 150866395 4840149 complement(join(1456237..1457328,1457389..1458762)) 1 NC_009046.1 protein threonine/tyrosine kinase; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Protein kinase 1458762 MPS1 4840149 MPS1 Pichia stipitis CBS 6054 Protein kinase XP_001385977.2 1456237 R 322104 CDS PICST_33109 150866138 4840268 1460270..1461706 1 NC_009046.1 predicted protein 1461706 4840268 PICST_33109 Pichia stipitis CBS 6054 predicted protein XP_001385631.2 1460270 D 322104 CDS PICST_47673 150866396 4840150 complement(join(1461928..1462260,1462441..1463290,1463375..>1463691)) 1 NC_009046.1 predicted protein 1463290 4840150 PICST_47673 Pichia stipitis CBS 6054 predicted protein XP_001385978.2 1461928 R 322104 CDS PICST_61642 126138912 4840269 complement(1465419..1466441) 1 NC_009046.1 Prohibitins and stomatins of the PID superfamily; Stomatin-like protein 3 1466441 STM1 4840269 STM1 Pichia stipitis CBS 6054 Stomatin-like protein 3 XP_001385979.1 1465419 R 322104 CDS PICST_84352 126138914 4840270 complement(1468314..1469216) 1 NC_009046.1 go_function: catalytic activity; predicted protein 1469216 4840270 PICST_84352 Pichia stipitis CBS 6054 predicted protein XP_001385980.1 1468314 R 322104 CDS PICST_62360 126138916 4840271 complement(join(1469715..1469824,1469885..1471166)) 1 NC_009046.1 predicted protein 1471166 4840271 PICST_62360 Pichia stipitis CBS 6054 predicted protein XP_001385981.1 1469715 R 322104 CDS PICST_33114 150866397 4840272 complement(1472318..1473808) 1 NC_009046.1 predicted protein 1473808 4840272 PICST_33114 Pichia stipitis CBS 6054 predicted protein XP_001385982.2 1472318 R 322104 CDS PICST_33115 150866398 4840273 complement(join(1474386..1475868,1476064..1476191)) 1 NC_009046.1 Sterol O-acyltransferase 2 (Sterol-ester synthase 2) 1476191 ARE2 4840273 ARE2 Pichia stipitis CBS 6054 Sterol O-acyltransferase 2 (Sterol-ester synthase 2) XP_001385983.2 1474386 R 322104 CDS PICST_33116 150866399 4840218 complement(1477217..1477939) 1 NC_009046.1 predicted protein 1477939 4840218 PICST_33116 Pichia stipitis CBS 6054 predicted protein XP_001385984.2 1477217 R 322104 CDS PICST_61965 150866139 4840219 1478209..1478898 1 NC_009046.1 similar to NAS6, an ankyrin repeat protein that interacts with the 19S regulatory particle of the 26S proteasome; hypothetical ankyrin-repeat protein 1478898 NAS6 4840219 NAS6 Pichia stipitis CBS 6054 hypothetical ankyrin-repeat protein XP_001385632.2 1478209 D 322104 CDS PICST_90266 150866140 4840151 1480021..1481046 1 NC_009046.1 predicted protein 1481046 4840151 PICST_90266 Pichia stipitis CBS 6054 predicted protein XP_001385633.2 1480021 D 322104 CDS PICST_62096 150866400 4840152 complement(join(1481330..1482351,1482382..1482583)) 1 NC_009046.1 predicted protein 1482583 4840152 PICST_62096 Pichia stipitis CBS 6054 predicted protein XP_001385985.2 1481330 R 322104 CDS PICST_84868 150866401 4840220 complement(1483060..1483782) 1 NC_009046.1 predicted protein 1483782 4840220 PICST_84868 Pichia stipitis CBS 6054 predicted protein XP_001385986.2 1483060 R 322104 CDS PICST_19671 150866141 4840221 join(1484152..1484476,1484534..1484901,1485004..>1485354) 1 NC_009046.1 Box C/D snoRNA accumulation 1484901 BCD1 4840221 BCD1 Pichia stipitis CBS 6054 Box C/D snoRNA accumulation XP_001385634.2 1484152 D 322104 CDS PICST_84754 150866142 4840153 join(1485895..1486237,1486277..1486674) 1 NC_009046.1 predicted protein 1486674 4840153 PICST_84754 Pichia stipitis CBS 6054 predicted protein XP_001385635.2 1485895 D 322104 CDS PICST_84928 150866143 4840154 1487579..1488586 1 NC_009046.1 Predicted quinone oxidoreductase (QOR3); go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; NADPH:quinone reductase 1488586 ZTA1 4840154 ZTA1 Pichia stipitis CBS 6054 NADPH:quinone reductase XP_001385636.2 1487579 D 322104 CDS PICST_62276 126138928 4840155 complement(1488917..1489468) 1 NC_009046.1 predicted protein 1489468 4840155 PICST_62276 Pichia stipitis CBS 6054 predicted protein XP_001385987.1 1488917 R 322104 CDS PICST_48736 150866402 4840222 complement(1490241..1491767) 1 NC_009046.1 Acyl-CoA desaturase (Stearoyl-CoA desaturase) (Fatty acid desaturase) (Delta(9)-desaturase); go_function: oxidoreductase activity; stearoyl-CoA desaturase 1491767 OLE2 4840222 OLE2 Pichia stipitis CBS 6054 stearoyl-CoA desaturase XP_001385988.2 1490241 R 322104 CDS PICST_84635 150866144 4840223 1492347..1493741 1 NC_009046.1 73 kDa subunit of the SWI/SNF transcription activation complex, homolog of Rsc6p subunit of the RSC chromatin remodeling complex; subunit of SWI/SNF transcription activation complex 1493741 SNF12 4840223 SNF12 Pichia stipitis CBS 6054 subunit of SWI/SNF transcription activation complex XP_001385637.2 1492347 D 322104 CDS PICST_61360 150866403 4840156 complement(join(1493878..1494063,1494079..1495181,1495206..1496562)) 1 NC_009046.1 predicted protein 1496562 4840156 PICST_61360 Pichia stipitis CBS 6054 predicted protein XP_001385989.2 1493878 R 322104 CDS PICST_47651 150866145 4840224 1497231..1497974 1 NC_009046.1 predicted protein 1497974 4840224 PICST_47651 Pichia stipitis CBS 6054 predicted protein XP_001385638.2 1497231 D 322104 CDS PICST_36839 150866404 4840157 complement(join(1498279..1498514,1498551..1503600)) 1 NC_009046.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; hypothetical protein 1503600 4840157 PICST_36839 Pichia stipitis CBS 6054 hypothetical protein XP_001385990.2 1498279 R 322104 CDS PICST_68199 150866405 4840225 complement(join(1504165..1505571,1505683..1505898)) 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 1505898 4840225 PICST_68199 Pichia stipitis CBS 6054 predicted protein XP_001385991.2 1504165 R 322104 CDS PICST_61736 126138232 4840226 1507301..1508044 1 NC_009046.1 predicted protein 1508044 4840226 PICST_61736 Pichia stipitis CBS 6054 predicted protein XP_001385639.1 1507301 D 322104 CDS PICST_84655 150866146 4840158 1509302..1510897 1 NC_009046.1 go_component: membrane; go_function: transporter activity; go_process: transport; manganese transporter 1510897 SMF1 4840158 SMF1 Pichia stipitis CBS 6054 manganese transporter XP_001385640.2 1509302 D 322104 CDS PICST_33133 126138938 4840205 complement(join(1512500..1512677,1512780..1512958)) 1 NC_009046.1 predicted protein 1512958 4840205 PICST_33133 Pichia stipitis CBS 6054 predicted protein XP_001385992.1 1512500 R 322104 CDS PICST_73033 150866147 4840227 1514594..1516153 1 NC_009046.1 predicted protein 1516153 4840227 PICST_73033 Pichia stipitis CBS 6054 predicted protein XP_001385641.2 1514594 D 322104 CDS PICST_68202 126138238 4840206 1517807..1518925 1 NC_009046.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; cAMP-dependent protein kinase catalytic subunit 1518925 TPK2 4840206 TPK2 Pichia stipitis CBS 6054 cAMP-dependent protein kinase catalytic subunit XP_001385642.1 1517807 D 322104 CDS PICST_61635 126138940 4840207 complement(1519303..1519641) 1 NC_009046.1 DNA-directed RNA polymerase II small subunit 9 participating in elongation and formed of two conserved zinc domains (DNA-directed RNA polymerase II 14.2 kDa polypeptide) (B12.6); go_function: DNA binding; transcription factor activity; DNA-directed RNA polymerase activity; go_process: RNA elongation; regulation of transcription, DNA-dependent; transcription; DNA-directed RNA polymerase II 1519641 RPB9 4840207 RPB9 Pichia stipitis CBS 6054 DNA-directed RNA polymerase II XP_001385993.1 1519303 R 322104 CDS PICST_90602 126138240 4840228 1520261..1520776 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L7/L12 1520776 RPL12B 4840228 RPL12B Pichia stipitis CBS 6054 60S ribosomal protein L7/L12 XP_001385643.1 1520261 D 322104 CDS PICST_33138 150866406 4840208 complement(1521028..1521717) 1 NC_009046.1 hypothetical protein 1521717 4840208 PICST_33138 Pichia stipitis CBS 6054 hypothetical protein XP_001385994.2 1521028 R 322104 CDS PICST_68205 150866148 4840229 1522526..1524796 1 NC_009046.1 hypothetical transcription factor 1524796 4840229 PICST_68205 Pichia stipitis CBS 6054 hypothetical transcription factor XP_001385644.2 1522526 D 322104 CDS PICST_48448 150866149 4840209 <1525530..1526264 1 NC_009046.1 conserved hypothetical protein 1526264 4840209 PICST_48448 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385645.2 <1525530 D 322104 CDS PICST_62477 150866407 4840210 complement(join(<1526652..1528839,1528927..1529384)) 1 NC_009046.1 Quinic acid utilization activator fungal specific zinc-finger transcription factor; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; fungal specific zinc-finger transcription factor 1529384 QUT1 4840210 QUT1 Pichia stipitis CBS 6054 fungal specific zinc-finger transcription factor XP_001385995.2 <1526652 R 322104 CDS PICST_33142 126138946 4840230 complement(1530761..1532278) 1 NC_009046.1 go_function: CoA-transferase activity; go_process: metabolism; 3-oxoacid CoA-transferase Succinyl-CoA:alpha-ketoacid-CoA transferase 1532278 OCA3 4840230 OCA3 Pichia stipitis CBS 6054 3-oxoacid CoA-transferase Succinyl-CoA:alpha-ketoacid-CoA transferase XP_001385996.1 1530761 R 322104 CDS PICST_62287 126138948 4840231 complement(1532827..1533813) 1 NC_009046.1 go_process: catechol metabolism; 6-chlorohydroxyquinol-1,2-dioxygenase 1533813 HQD1 4840231 HQD1 Pichia stipitis CBS 6054 6-chlorohydroxyquinol-1,2-dioxygenase XP_001385997.1 1532827 R 322104 CDS PICST_62322 126138950 4840232 complement(1534441..1534881) 1 NC_009046.1 go_function: 3-dehydroquinate dehydratase activity; go_process: aromatic amino acid family biosynthesis; 3-dehydroquinate dehydratase 1 (3-dehydroquinase 1) (Type II DHQase 1) 1534881 DQD1 4840232 DQD1 Pichia stipitis CBS 6054 3-dehydroquinate dehydratase 1 (3-dehydroquinase 1) (Type II DHQase 1) XP_001385998.1 1534441 R 322104 CDS PICST_78913 150866150 4840233 1535802..1536665 1 NC_009046.1 putative flavoprotein oxygenase; flavoprotein oxygenase 1536665 YWR1 4840233 YWR1 Pichia stipitis CBS 6054 flavoprotein oxygenase XP_001385646.2 1535802 D 322104 CDS PICST_62714 150866151 4840211 1537140..1538891 1 NC_009046.1 conserved hypothetical protein 1538891 4840211 PICST_62714 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385647.2 1537140 D 322104 CDS PICST_48804 126138250 4840212 1539214..1539585 1 NC_009046.1 go_function: DNA binding; transcription factor activity; DNA-directed RNA polymerase activity; go_process: RNA elongation; regulation of transcription, DNA-dependent; transcription; DNA-directed RNA polymerase I subunit A12 (RPA12) 1539585 RPA12 4840212 RPA12 Pichia stipitis CBS 6054 DNA-directed RNA polymerase I subunit A12 (RPA12) XP_001385648.1 1539214 D 322104 CDS PICST_79203 126138952 4840213 complement(1539783..1540739) 1 NC_009046.1 phycocyanin alpha-subunit phycocyanobilin lyase 1540739 PPL1 4840213 PPL1 Pichia stipitis CBS 6054 phycocyanin alpha-subunit phycocyanobilin lyase XP_001385999.1 1539783 R 322104 CDS PICST_66007 150866152 4840234 1541722..1543374 1 NC_009046.1 T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon); T-complex protein 1, epsilon subunit 1543374 CCT5 4840234 CCT5 Pichia stipitis CBS 6054 T-complex protein 1, epsilon subunit XP_001385649.2 1541722 D 322104 CDS PICST_84432 150866153 4840214 1544253..1545512 1 NC_009046.1 actin-related protein3; go_component: actin cytoskeleton; go_function: structural constituent of cytoskeleton; actin-related protein 1545512 ARP3 4840214 ARP3 Pichia stipitis CBS 6054 actin-related protein XP_001385650.2 1544253 D 322104 CDS PICST_33151 150866154 4840215 1546105..1553556 1 NC_009046.1 go_function: phosphotransferase activity, alcohol group as acceptor; 1-phosphatidylinositol 3-kinase 1553556 TOR2 4840215 TOR2 Pichia stipitis CBS 6054 1-phosphatidylinositol 3-kinase XP_001385651.2 1546105 D 322104 CDS PICST_33152 150866408 4840216 complement(1553687..1554784) 1 NC_009046.1 go_function: RNA-3'-phosphate cyclase activity; predicted protein 1554784 4840216 PICST_33152 Pichia stipitis CBS 6054 predicted protein XP_001386000.2 1553687 R 322104 CDS PICST_62072 150866155 4840235 <1556047..1556931 1 NC_009046.1 go_component: transcription factor TFIID complex; go_function: transcription initiation factor activity; go_process: transcription initiation; predicted protein 1556931 4840235 PICST_62072 Pichia stipitis CBS 6054 predicted protein XP_001385652.2 <1556047 D 322104 CDS PICST_62058 150866156 4840217 1557532..1560957 1 NC_009046.1 go_component: nucleus; go_process: mitosis; chromosome condensation; predicted protein 1560957 4840217 PICST_62058 Pichia stipitis CBS 6054 predicted protein XP_001385653.2 1557532 D 322104 CDS PICST_61839 150866157 4840159 1561353..1563167 1 NC_009046.1 predicted protein 1563167 4840159 PICST_61839 Pichia stipitis CBS 6054 predicted protein XP_001385654.2 1561353 D 322104 CDS PICST_36859 150866158 4840160 1563846..1564910 1 NC_009046.1 Performs last step in heme biosynthesis pathway, inserting ferrous iron into protoporphyrin IX; go_function: ferrochelatase activity; go_process: heme biosynthesis; ferrochelatase precursor 1564910 HEM15 4840160 HEM15 Pichia stipitis CBS 6054 ferrochelatase precursor XP_001385655.2 1563846 D 322104 CDS PICST_62182 150866409 4840161 complement(join(1565005..1565408,1565433..1565937)) 1 NC_009046.1 predicted protein 1565937 4840161 PICST_62182 Pichia stipitis CBS 6054 predicted protein XP_001386001.2 1565005 R 322104 CDS PICST_33158 150866159 4840236 1566431..1567312 1 NC_009046.1 go_component: intracellular; go_function: nucleic acid binding; predicted protein 1567312 4840236 PICST_33158 Pichia stipitis CBS 6054 predicted protein XP_001385656.2 1566431 D 322104 CDS PICST_62299 150866410 4840162 complement(join(1567369..1568215,1568249..1568548,1568579..1568619,1568676..1568692,1568751..1568886)) 1 NC_009046.1 predicted protein 1568886 4840162 PICST_62299 Pichia stipitis CBS 6054 predicted protein XP_001386002.2 1567369 R 322104 CDS PICST_33160 150866160 4840237 1569466..1569783 1 NC_009046.1 predicted protein 1569783 4840237 PICST_33160 Pichia stipitis CBS 6054 predicted protein XP_001385657.2 1569466 D 322104 CDS PICST_90638 126138270 4840163 1570453..1571055 1 NC_009046.1 predicted protein 1571055 4840163 PICST_90638 Pichia stipitis CBS 6054 predicted protein XP_001385658.1 1570453 D 322104 CDS PICST_62265 150866161 4840164 join(<1571981..1574068,1574111..1576580,1576605..1576720) 1 NC_009046.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; snf family helicase 1576720 SWR1 4840164 SWR1 Pichia stipitis CBS 6054 snf family helicase XP_001385659.2 <1571981 D 322104 CDS PICST_61950 126138274 4840165 1577224..1577571 1 NC_009046.1 Vacuolar ATP synthase subunit G (V-ATPase G subunit) (Vacuolar proton pump G subunit) (V-ATPase 13 kDa subunit); vacuolar ATPase V1 domain subunit G 1577571 VMA10 4840165 VMA10 Pichia stipitis CBS 6054 vacuolar ATPase V1 domain subunit G XP_001385660.1 1577224 D 322104 CDS PICST_90594 150866411 4840166 complement(1577949..1579799) 1 NC_009046.1 aldehyde dehydrogenase NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPN) (ALD1); go_function: oxidoreductase activity; go_process: metabolism; Meiotic Sister-Chromatid recombination aldehyde dehydrogenase 1579799 MSC7 4840166 MSC7 Pichia stipitis CBS 6054 Meiotic Sister-Chromatid recombination aldehyde dehydrogenase XP_001386003.2 1577949 R 322104 CDS PICST_48321 150866412 4840238 complement(1580338..1582425) 1 NC_009046.1 predicted protein 1582425 4840238 PICST_48321 Pichia stipitis CBS 6054 predicted protein XP_001386004.2 1580338 R 322104 CDS PICST_48209 150866162 4840239 <1583181..>1584449 1 NC_009046.1 predicted protein >1584449 4840239 PICST_48209 Pichia stipitis CBS 6054 predicted protein XP_001385661.2 <1583181 D 322104 CDS PICST_36865 150866413 4840167 complement(1585048..1585359) 1 NC_009046.1 predicted protein 1585359 4840167 PICST_36865 Pichia stipitis CBS 6054 predicted protein XP_001386005.2 1585048 R 322104 CDS PICST_48420 126138278 4840240 <1587324..1588859 1 NC_009046.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; fructose symporter 1588859 HXT4 4840240 HXT4 Pichia stipitis CBS 6054 fructose symporter XP_001385662.1 <1587324 D 322104 CDS PICST_33169 150866414 4840168 complement(1589619..1591400) 1 NC_009046.1 go_component: membrane; go_function: nucleobase transporter activity; go_process: nucleobase, nucleoside, nucleotide and nucleic acid transport; allantoin permease 1591400 DAL4.2 4840168 DAL4.2 Pichia stipitis CBS 6054 allantoin permease XP_001386006.2 1589619 R 322104 CDS PICST_33170 150866163 4840241 1593416..1595332 1 NC_009046.1 predicted protein 1595332 4840241 PICST_33170 Pichia stipitis CBS 6054 predicted protein XP_001385663.2 1593416 D 322104 CDS PICST_48996 150866415 4840169 complement(1595383..1596819) 1 NC_009046.1 prolyl aminopeptidase 1596819 PAP2 4840169 PAP2 Pichia stipitis CBS 6054 prolyl aminopeptidase XP_001386007.2 1595383 R 322104 CDS PICST_61740 150866164 4840242 join(1597523..1598908,1598939..1599267,1599295..1600253,1600272..1601181,1601201..1601276,1601297..1601398) 1 NC_009046.1 predicted protein 1601398 4840242 PICST_61740 Pichia stipitis CBS 6054 predicted protein XP_001385664.2 1597523 D 322104 CDS PICST_33173 126138970 4840170 complement(join(1601613..1602977,1603143..1603202)) 1 NC_009046.1 predicted protein 1603202 4840170 PICST_33173 Pichia stipitis CBS 6054 predicted protein XP_001386008.1 1601613 R 322104 CDS PICST_66010 150866165 4840243 1603724..1604593 1 NC_009046.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1604593 4840243 PICST_66010 Pichia stipitis CBS 6054 predicted protein XP_001385665.2 1603724 D 322104 CDS PICST_33175 150866166 4840171 1604949..1606154 1 NC_009046.1 predicted protein 1606154 4840171 PICST_33175 Pichia stipitis CBS 6054 predicted protein XP_001385666.2 1604949 D 322104 CDS PICST_61375 126138972 4840311 complement(1606654..>1607409) 1 NC_009046.1 predicted protein >1607409 4840311 PICST_61375 Pichia stipitis CBS 6054 predicted protein XP_001386009.1 1606654 R 322104 CDS PICST_48898 150866416 4840244 complement(join(1607577..1608866,1609311..1609493)) 1 NC_009046.1 predicted protein 1609493 4840244 PICST_48898 Pichia stipitis CBS 6054 predicted protein XP_001386010.2 1607577 R 322104 CDS PICST_33177 150866167 4840245 1611108..1612733 1 NC_009046.1 similar to the Saccharomyces pombe and mammalian Chk1 checkpoint kinases; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; checkpoint kinase 1 1612733 CHK1 4840245 CHK1 Pichia stipitis CBS 6054 checkpoint kinase 1 XP_001385667.2 1611108 D 322104 CDS PICST_68215 150866168 4840312 1613532..1615520 1 NC_009046.1 go_component: membrane; go_function: ion channel activity; go_process: ion transport; vacuolar cation channel 1615520 YVC1 4840312 YVC1 Pichia stipitis CBS 6054 vacuolar cation channel XP_001385668.2 1613532 D 322104 CDS PICST_68216 150866169 4840313 1616679..1620383 1 NC_009046.1 Negative affector of Salt Tolerance 1620383 NST1 4840313 NST1 Pichia stipitis CBS 6054 Negative affector of Salt Tolerance XP_001385669.2 1616679 D 322104 CDS PICST_79030 126138294 4840314 1621978..1622538 1 NC_009046.1 Gtp-binding protein of the rho subfamily of ras-like proteins; go_function: GTP binding; go_process: small GTPase mediated signal transduction; Ras-related small GTPase, Rho type 1622538 RHO2 4840314 RHO2 Pichia stipitis CBS 6054 Ras-related small GTPase, Rho type XP_001385670.1 1621978 D 322104 CDS PICST_73086 126138296 4840315 1624277..1625659 1 NC_009046.1 go_component: membrane; predicted protein 1625659 4840315 PICST_73086 Pichia stipitis CBS 6054 predicted protein XP_001385671.1 1624277 D 322104 CDS PICST_33182 150866417 4840316 complement(1626688..1628082) 1 NC_009046.1 predicted protein 1628082 4840316 PICST_33182 Pichia stipitis CBS 6054 predicted protein XP_001386011.2 1626688 R 322104 CDS PICST_68219 150866170 4840274 1629119..1629610 1 NC_009046.1 predicted protein 1629610 4840274 PICST_68219 Pichia stipitis CBS 6054 predicted protein XP_001385672.2 1629119 D 322104 CDS PICST_73446 150866171 4840317 1630811..1632064 1 NC_009046.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; aspartic proteinase precursor 1632064 APR1 4840317 APR1 Pichia stipitis CBS 6054 aspartic proteinase precursor XP_001385673.2 1630811 D 322104 CDS PICST_78689 126138978 4840318 complement(1635139..1637082) 1 NC_009046.1 Nuclear-encoded mitochondrial protein member of the heat shock protein 70 (HSP70) family most similar to E. coli DnaK protein acts as a chaperone for protein import across the inner membrane subunit of Endo.SceI endonuclease; mitochondrial heat shock protein of the HSP70 family upregulated 15 fold under aerobic conditions 1637082 SSC1.2 4840318 SSC1.2 Pichia stipitis CBS 6054 mitochondrial heat shock protein of the HSP70 family upregulated 15 fold under aerobic conditions XP_001386012.1 1635139 R 322104 CDS PICST_68225 150866172 4840275 1637909..1638991 1 NC_009046.1 go_function: molecular function unknown; conserved hypothetical protein 1638991 4840275 PICST_68225 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001385674.2 1637909 D 322104 CDS PICST_84845 150866173 4840319 join(1639937..1640878,1640921..1641187) 1 NC_009046.1 predicted protein 1641187 4840319 PICST_84845 Pichia stipitis CBS 6054 predicted protein XP_001385675.2 1639937 D 322104 CDS PICST_90446 126138306 4840320 1642687..1643799 1 NC_009046.1 go_function: oxidoreductase activity, acting on CH-OH group of donors; go_process: carbohydrate metabolism; glycerol-3-phosphate dehydrogenase 1643799 GPD1 4840320 GPD1 Pichia stipitis CBS 6054 glycerol-3-phosphate dehydrogenase XP_001385676.1 1642687 D 322104 CDS PICST_48846 150866418 4840321 complement(1644202..1646097) 1 NC_009046.1 lysophospholipase B; go_function: phospholipase activity; go_process: phospholipid catabolism; Lysophospholipase 1646097 PLB6 4840321 PLB6 Pichia stipitis CBS 6054 Lysophospholipase XP_001386013.2 1644202 R 322104 CDS PICST_7312 150866174 4840276 <1647693..>1648484 1 NC_009046.1 predicted protein >1648484 4840276 PICST_7312 Pichia stipitis CBS 6054 predicted protein XP_001385677.2 <1647693 D 322104 CDS PICST_68228 150866419 4840322 complement(1648804..1651776) 1 NC_009046.1 predicted protein 1651776 4840322 PICST_68228 Pichia stipitis CBS 6054 predicted protein XP_001386014.2 1648804 R 322104 CDS PICST_62811 150866175 4840277 join(1654134..1654678,1654703..1655228) 1 NC_009046.1 predicted protein 1655228 4840277 PICST_62811 Pichia stipitis CBS 6054 predicted protein XP_001385678.2 1654134 D 322104 CDS PICST_9952 126138984 4840323 complement(<1657600..>1657761) 1 NC_009046.1 lactose regulatory protein (LAC9); go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; lactose regulatory protein >1657761 GAL4 4840323 GAL4 Pichia stipitis CBS 6054 lactose regulatory protein XP_001386015.1 <1657600 R 322104 CDS PICST_36882 150866420 4840278 complement(1662880..1663428) 1 NC_009046.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 1663428 4840278 PICST_36882 Pichia stipitis CBS 6054 predicted protein XP_001386016.2 1662880 R 322104 CDS PICST_47969 150866421 4840279 complement(join(<1663949..1664296,1664360..1666757,1667001..1667293,1667573..1667977)) 1 NC_009046.1 ATP-dependent DNA helicase (ADD1.1); go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent DNA helicase 1667977 SGS1 4840279 SGS1 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001386017.2 <1663949 R 322104 CDS PICST_36883 126138312 4840280 join(1671052..1671181,1671297,1671342..1671475,1671584..1671736,1671821..1672074) 1 NC_009046.1 go_function: nucleic acid binding; predicted protein 1672074 4840280 PICST_36883 Pichia stipitis CBS 6054 predicted protein XP_001385679.1 1671052 D 322104 CDS PICST_84618 150866176 4840199 1673266..1681431 1 NC_009046.1 translational activator of GCN4 through activation of GCN2 in response to starvation; GCN1; translational activator of GCN4 1681431 GCN1 4840199 GCN1 Pichia stipitis CBS 6054 GCN1; translational activator of GCN4 XP_001385680.2 1673266 D 322104 CDS PICST_48819 150866422 4840200 complement(join(<1682023..1682264,1682412..1682642,1682916..>1683192)) 1 NC_009046.1 transcription factor involved in glucose repression; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; DNA-binding protein (Carbon catabolite repressor) 1682642 MIG2 4840200 MIG2 Pichia stipitis CBS 6054 DNA-binding protein (Carbon catabolite repressor) XP_001386018.2 <1682023 R 322104 CDS PICST_68232 150866177 4840281 1687800..1694711 1 NC_009046.1 hypothetical protein containing von Willebrand factor and highly repetitive sequences 1694711 VWF1 4840281 VWF1 Pichia stipitis CBS 6054 hypothetical protein containing von Willebrand factor and highly repetitive sequences XP_001385681.2 1687800 D 322104 CDS PICST_61722 150866178 4840201 1696495..>1697718 1 NC_009046.1 hyphally regulated cell wall protein >1697718 HYR6.4 4840201 HYR6.4 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001385682.2 1696495 D 322104 CDS PICST_3402 150866179 4840202 1703837..>1705063 1 NC_009046.1 hyphally regulated cell wall protein >1705063 HYR6.2 4840202 HYR6.2 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001385683.2 1703837 D 322104 CDS PICST_11314 126138322 4840203 <1708541..>1709968 1 NC_009046.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; possible hexose transporter >1709968 HXT2.5 4840203 HXT2.5 Pichia stipitis CBS 6054 possible hexose transporter XP_001385684.1 <1708541 D 322104 CDS PICST_61725 150866180 4840204 1711017..>1713230 1 NC_009046.1 beta-glucosidase precursor glycosyl hydrolase family 3; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; beta-glucosidase >1713230 BGL3 4840204 BGL3 Pichia stipitis CBS 6054 beta-glucosidase XP_001385685.2 1711017 D 322104 CDS PICST_27984 150866423 4839762 complement(1713740..1715392) 1 NC_009046.1 Sugar transporter similar to Candida intermedia gxf1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; Sugar UpTake (tentative) 1715392 SUT3 4839762 SUT3 Pichia stipitis CBS 6054 Sugar UpTake (tentative) XP_001386019.2 1713740 R 322104 CDS PICST_33211 150866424 4840282 complement(1720501..1721448) 1 NC_009046.1 predicted protein 1721448 4840282 PICST_33211 Pichia stipitis CBS 6054 predicted protein XP_001386020.2 1720501 R 322104 CDS PICST_33212 150866425 4840785 1855..8187 1 NC_009047.1 ATP-dependent DNA helicase 8187 ADD2.2 4840785 ADD2.2 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001386021.2 1855 D 322104 CDS PICST_33213 126138999 4840492 join(8418..8470,8501..8512,8560..9097) 1 NC_009047.1 predicted protein 9097 4840492 PICST_33213 Pichia stipitis CBS 6054 predicted protein XP_001386022.1 8418 D 322104 CDS PICST_33214 150866426 4840516 10475..11830 1 NC_009047.1 predicted protein 11830 4840516 PICST_33214 Pichia stipitis CBS 6054 predicted protein XP_001386023.2 10475 D 322104 CDS PICST_33215 150866573 4840422 complement(12367..18837) 1 NC_009047.1 hypothetical serine rich protein 18837 4840422 PICST_33215 Pichia stipitis CBS 6054 hypothetical serine rich protein XP_001386217.2 12367 R 322104 CDS PICST_50059 150866574 4840580 complement(join(26684..26931,29416..30589)) 1 NC_009047.1 hyphally regulated cell wall protein similar to Candida albicans HYR1, HYR3, HYR5, HYR10; hyphally regulated cell wall protein 30589 HYR2.1 4840580 HYR2.1 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001386218.2 26684 R 322104 CDS PICST_63077 126139393 4840581 complement(32472..32966) 1 NC_009047.1 predicted protein 32966 4840581 PICST_63077 Pichia stipitis CBS 6054 predicted protein XP_001386219.1 32472 R 322104 CDS PICST_63551 150866427 4840582 join(<35506..35784,35854..35952,36073..36436,36509..37335) 1 NC_009047.1 predicted protein 37335 4840582 PICST_63551 Pichia stipitis CBS 6054 predicted protein XP_001386024.2 <35506 D 322104 CDS PICST_90752 126139005 4840533 38300..39463 1 NC_009047.1 go_function: ATP binding; kinase activity; go_process: phosphorylation; predicted protein 39463 4840533 PICST_90752 Pichia stipitis CBS 6054 predicted protein XP_001386025.1 38300 D 322104 CDS PICST_68235 150866575 4840452 complement(39640..40989) 1 NC_009047.1 go_component: nucleus; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 40989 4840452 PICST_68235 Pichia stipitis CBS 6054 predicted protein XP_001386220.2 39640 R 322104 CDS PICST_33220 150866428 4840583 42907..46395 1 NC_009047.1 hypothetical protein 46395 4840583 PICST_33220 Pichia stipitis CBS 6054 hypothetical protein XP_001386026.2 42907 D 322104 CDS PICST_79258 150866576 4840534 complement(48126..51896) 1 NC_009047.1 go_component: myosin; go_function: motor activity; ATP binding; Myosin-5 isoform 51896 MYO5 4840534 MYO5 Pichia stipitis CBS 6054 Myosin-5 isoform XP_001386221.2 48126 R 322104 CDS PICST_49918 126139399 4840584 complement(52320..53882) 1 NC_009047.1 WD-repeat protein required for cell viability 53882 WDR7 4840584 WDR7 Pichia stipitis CBS 6054 WD-repeat protein required for cell viability XP_001386222.1 52320 R 322104 CDS PICST_49910 150866577 4840585 complement(<54396..55475) 1 NC_009047.1 predicted protein 55475 4840585 PICST_49910 Pichia stipitis CBS 6054 predicted protein XP_001386223.2 <54396 R 322104 CDS PICST_20558 150866429 4840586 join(<57261..57821,57939..>58244) 1 NC_009047.1 predicted protein 57821 4840586 PICST_20558 Pichia stipitis CBS 6054 predicted protein XP_001386027.2 <57261 D 322104 CDS PICST_33225 150866578 4840421 complement(59230..60912) 1 NC_009047.1 Acetyl-CoA transporter 60912 PYC2 4840421 PYC2 Pichia stipitis CBS 6054 Acetyl-CoA transporter XP_001386224.2 59230 R 322104 CDS PICST_68238 126139405 4840587 complement(61626..62795) 1 NC_009047.1 beta subunit of pyruvate dehydrogenase (PDH) (E1 beta); pyruvate dehydrogenase E1 component, beta subunit (PDH) 62795 PDB1 4840587 PDB1 Pichia stipitis CBS 6054 pyruvate dehydrogenase E1 component, beta subunit (PDH) XP_001386225.1 61626 R 322104 CDS PICST_73691 126139011 4840588 64540..66048 1 NC_009047.1 predicted protein 66048 4840588 PICST_73691 Pichia stipitis CBS 6054 predicted protein XP_001386028.1 64540 D 322104 CDS PICST_50000 150866579 4840578 complement(66386..69067) 1 NC_009047.1 involved in polarity establishment/cellular polarization during budding; polarity establishment/cellular polarization 69067 AXL2 4840578 AXL2 Pichia stipitis CBS 6054 polarity establishment/cellular polarization XP_001386226.2 66386 R 322104 CDS PICST_33229 150866580 4840589 complement(70597..71532) 1 NC_009047.1 predicted protein 71532 4840589 PICST_33229 Pichia stipitis CBS 6054 predicted protein XP_001386227.2 70597 R 322104 CDS PICST_49954 126139411 4840590 complement(<72348..>72638) 1 NC_009047.1 go_component: mediator complex; go_function: RNA polymerase II transcription mediator activity; go_process: regulation of transcription; predicted protein >72638 4840590 PICST_49954 Pichia stipitis CBS 6054 predicted protein XP_001386228.1 <72348 R 322104 CDS PICST_33231 126139013 4840591 73045..73536 1 NC_009047.1 predicted protein 73536 4840591 PICST_33231 Pichia stipitis CBS 6054 predicted protein XP_001386029.1 73045 D 322104 CDS PICST_90975 126139413 4840453 complement(73808..77347) 1 NC_009047.1 Pyruvate carboxylase (Pyruvic carboxylase 1) (PCB 1); go_function: ligase activity; catalytic activity; ATP binding; go_process: metabolism; Pyruvate carboxylase 77347 PYC1 4840453 PYC1 Pichia stipitis CBS 6054 Pyruvate carboxylase XP_001386229.1 73808 R 322104 CDS PICST_68241 150866581 4840592 complement(80627..81568) 1 NC_009047.1 predicted protein 81568 4840592 PICST_68241 Pichia stipitis CBS 6054 predicted protein XP_001386230.2 80627 R 322104 CDS PICST_49214 150866430 4840593 join(84810..85447,85694..86015) 1 NC_009047.1 predicted protein 86015 4840593 PICST_49214 Pichia stipitis CBS 6054 predicted protein XP_001386030.2 84810 D 322104 CDS PICST_68242 150866431 4840454 87467..89251 1 NC_009047.1 predicted protein 89251 4840454 PICST_68242 Pichia stipitis CBS 6054 predicted protein XP_001386031.2 87467 D 322104 CDS PICST_85334 150866432 4840455 join(91398..92718,92746..>92903) 1 NC_009047.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; Carboxylic acid transporter protein homolog 92718 JEN12 4840455 JEN12 Pichia stipitis CBS 6054 Carboxylic acid transporter protein homolog XP_001386032.2 91398 D 322104 CDS PICST_90848 150866433 4840456 93506..94165 1 NC_009047.1 go_process: nucleoside metabolism; orotate phosphoribosyltransferase 94165 URA5 4840456 URA5 Pichia stipitis CBS 6054 orotate phosphoribosyltransferase XP_001386033.2 93506 D 322104 CDS PICST_33238 150866582 4840457 complement(94377..95543) 1 NC_009047.1 conserved hypothetical protein 95543 4840457 PICST_33238 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001386231.2 94377 R 322104 CDS PICST_85362 150866583 4840594 complement(96003..97754) 1 NC_009047.1 Calnexin homolog (CALX); go_function: calcium ion binding; Calnexin homolog 97754 CAL1 4840594 CAL1 Pichia stipitis CBS 6054 Calnexin homolog XP_001386232.2 96003 R 322104 CDS PICST_9152 150866584 4840595 complement(<98321..>98704) 1 NC_009047.1 cell wall structure or biosynthesis >98704 ECM1 4840595 ECM1 Pichia stipitis CBS 6054 cell wall structure or biosynthesis XP_001386233.2 <98321 R 322104 CDS PICST_49623 150866585 4840596 complement(99878..101731) 1 NC_009047.1 RNA polymerase II transcription factor B 73 kDa subunit 101731 TFB1 4840596 TFB1 Pichia stipitis CBS 6054 RNA polymerase II transcription factor B 73 kDa subunit XP_001386234.2 99878 R 322104 CDS PICST_63252 126139023 4840739 <102572..103015 1 NC_009047.1 predicted protein 103015 4840739 PICST_63252 Pichia stipitis CBS 6054 predicted protein XP_001386034.1 <102572 D 322104 CDS PICST_33243 150866434 4840569 105337..106446 1 NC_009047.1 predicted protein 106446 4840569 PICST_33243 Pichia stipitis CBS 6054 predicted protein XP_001386035.2 105337 D 322104 CDS PICST_33244 150866435 4840570 107211..108296 1 NC_009047.1 go_component: membrane; go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 108296 4840570 PICST_33244 Pichia stipitis CBS 6054 predicted protein XP_001386036.2 107211 D 322104 CDS PICST_33245 150866586 4840571 complement(108372..109337) 1 NC_009047.1 predicted protein 109337 4840571 PICST_33245 Pichia stipitis CBS 6054 predicted protein XP_001386235.2 108372 R 322104 CDS PICST_49415 126139029 4840740 109549..110352 1 NC_009047.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 110352 4840740 PICST_49415 Pichia stipitis CBS 6054 predicted protein XP_001386037.1 109549 D 322104 CDS PICST_62908 150866587 4840572 complement(join(110519..112048,112088..112583,112755..113368)) 1 NC_009047.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 113368 4840572 PICST_62908 Pichia stipitis CBS 6054 predicted protein XP_001386236.2 110519 R 322104 CDS PICST_49245 150866588 4840741 complement(114777..115733) 1 NC_009047.1 predicted protein 115733 4840741 PICST_49245 Pichia stipitis CBS 6054 predicted protein XP_001386237.2 114777 R 322104 CDS PICST_85155 150866589 4840742 complement(117029..118081) 1 NC_009047.1 go_component: nucleus; transcription factor complex; go_function: RNA polymerase II transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcription initiation from RNA polymerase II promoter; predicted protein 118081 4840742 PICST_85155 Pichia stipitis CBS 6054 predicted protein XP_001386238.2 117029 R 322104 CDS PICST_85151 126139031 4840743 119178..120815 1 NC_009047.1 DnaK homolog, interacts with Zuo1p (DnaJ homolog) to form a ribosome-associated complex (RAC) that is bound to the ribosome via the Zuo1p subunit heat shock protein 70 homolog; involved in pleiotropic drug resistance that forms a ribosome-associated complex similar to HSP70 family; regulator protein 120815 SSZ1 4840743 SSZ1 Pichia stipitis CBS 6054 regulator protein XP_001386038.1 119178 D 322104 CDS PICST_85276 126139033 4840573 join(121277..121524,121567..121591,121739..122290,122333..122537,122694..123187) 1 NC_009047.1 predicted protein 123187 4840573 PICST_85276 Pichia stipitis CBS 6054 predicted protein XP_001386039.1 121277 D 322104 CDS PICST_73792 150866436 4840574 123644..124621 1 NC_009047.1 go_function: catalytic activity; go_process: folic acid and derivative biosynthesis; predicted protein 124621 4840574 PICST_73792 Pichia stipitis CBS 6054 predicted protein XP_001386040.2 123644 D 322104 CDS PICST_63672 150866437 4840575 join(<125454..127202,127314..127703) 1 NC_009047.1 go_component: nucleus; go_function: DNA binding; predicted protein 127703 4840575 PICST_63672 Pichia stipitis CBS 6054 predicted protein XP_001386041.2 <125454 D 322104 CDS PICST_63564 150866438 4840576 join(129787..129965,130155..130231,130259..130695,130729..132435) 1 NC_009047.1 predicted protein 132435 4840576 PICST_63564 Pichia stipitis CBS 6054 predicted protein XP_001386042.2 129787 D 322104 CDS PICST_49761 150866590 4840577 complement(132485..>134014) 1 NC_009047.1 go_process: electron transport; predicted protein >134014 4840577 PICST_49761 Pichia stipitis CBS 6054 predicted protein XP_001386239.2 132485 R 322104 CDS PICST_66033 126139435 4840744 complement(134574..135044) 1 NC_009047.1 predicted protein 135044 4840744 PICST_66033 Pichia stipitis CBS 6054 predicted protein XP_001386240.1 134574 R 322104 CDS PICST_63502 126139041 4840745 join(135373..135400,135422..135891) 1 NC_009047.1 Frataxin homolog, mitochondrial precursor Contains: Frataxin homolog intermediate form 135891 FRD1 4840745 FRD1 Pichia stipitis CBS 6054 Frataxin homolog, mitochondrial precursor Contains: Frataxin homolog intermediate form XP_001386043.1 135373 D 322104 CDS PICST_68255 150866439 4840423 136896..137765 1 NC_009047.1 predicted protein 137765 4840423 PICST_68255 Pichia stipitis CBS 6054 predicted protein XP_001386044.2 136896 D 322104 CDS PICST_68256 150866440 4840424 138439..139764 1 NC_009047.1 go_function: zinc ion binding; predicted protein 139764 4840424 PICST_68256 Pichia stipitis CBS 6054 predicted protein XP_001386045.2 138439 D 322104 CDS PICST_63037 150866591 4840425 complement(139965..141674) 1 NC_009047.1 predicted protein 141674 4840425 PICST_63037 Pichia stipitis CBS 6054 predicted protein XP_001386241.2 139965 R 322104 CDS PICST_85256 150866441 4840746 143220..144503 1 NC_009047.1 predicted protein 144503 4840746 PICST_85256 Pichia stipitis CBS 6054 predicted protein XP_001386046.2 143220 D 322104 CDS PICST_63490 150866592 4840426 complement(144753..146414) 1 NC_009047.1 predicted protein 146414 4840426 PICST_63490 Pichia stipitis CBS 6054 predicted protein XP_001386242.2 144753 R 322104 CDS PICST_33265 150866593 4840747 complement(join(146999..147870,147922..148331,148647..148945)) 1 NC_009047.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; protein kinase 148945 OCA2 4840747 OCA2 Pichia stipitis CBS 6054 protein kinase XP_001386243.2 146999 R 322104 CDS PICST_85080 150866594 4840748 complement(join(150602..150773,150867..152743)) 1 NC_009047.1 predicted protein 152743 4840748 PICST_85080 Pichia stipitis CBS 6054 predicted protein XP_001386244.2 150602 R 322104 CDS PICST_17369 150866442 4840749 157023..>158198 1 NC_009047.1 hyphally regulated cell wall protein Exo-alpha-sialidase >158198 HYR5.3 4840749 HYR5.3 Pichia stipitis CBS 6054 hyphally regulated cell wall protein Exo-alpha-sialidase XP_001386047.2 157023 D 322104 CDS PICST_33268 150866595 4840427 complement(164892..166529) 1 NC_009047.1 with sequence similarity to with homology; nuclear architecture related protein 166529 NAR1 4840427 NAR1 Pichia stipitis CBS 6054 nuclear architecture related protein XP_001386245.2 164892 R 322104 CDS PICST_63445 150866596 4840750 complement(167026..168318) 1 NC_009047.1 predicted protein 168318 4840750 PICST_63445 Pichia stipitis CBS 6054 predicted protein XP_001386246.2 167026 R 322104 CDS PICST_14973 150866443 4840751 join(169255..169696,169739..170835,170902..>171975) 1 NC_009047.1 go_function: subtilase activity; go_process: proteolysis and peptidolysis; predicted protein 170835 4840751 PICST_14973 Pichia stipitis CBS 6054 predicted protein XP_001386048.2 169255 D 322104 CDS PICST_85065 150866444 4840428 174156..175655 1 NC_009047.1 Glucose-6-phosphate 1-dehydrogenase (G6PD); go_function: glucose-6-phosphate 1-dehydrogenase activity; go_process: glucose metabolism; Glucose-6-phosphate 1-dehydrogenase 175655 ZWF1 4840428 ZWF1 Pichia stipitis CBS 6054 Glucose-6-phosphate 1-dehydrogenase XP_001386049.2 174156 D 322104 CDS PICST_85029 150866597 4840429 complement(join(177075..179041,179132..179256,179314..179598,179671..179972)) 1 NC_009047.1 go_function: catalytic activity; ATP binding; go_process: metabolism; fructose 2,6-bisphosphate metabolism; 6-phosphofructose-2-kinase 179972 FRK26.1 4840429 FRK26.1 Pichia stipitis CBS 6054 6-phosphofructose-2-kinase XP_001386247.2 177075 R 322104 CDS PICST_33273 150866445 4840752 184654..187227 1 NC_009047.1 zinc finger transcription factor; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 187227 MSN4 4840752 MSN4 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001386050.2 184654 D 322104 CDS PICST_63166 126139057 4840430 187938..188111 1 NC_009047.1 predicted protein 188111 4840430 PICST_63166 Pichia stipitis CBS 6054 predicted protein XP_001386051.1 187938 D 322104 CDS PICST_36916 150866598 4840431 complement(188526..189350) 1 NC_009047.1 predicted protein 189350 4840431 PICST_36916 Pichia stipitis CBS 6054 predicted protein XP_001386248.2 188526 R 322104 CDS PICST_33275 150866446 4840753 189957..192086 1 NC_009047.1 predicted protein 192086 4840753 PICST_33275 Pichia stipitis CBS 6054 predicted protein XP_001386052.2 189957 D 322104 CDS PICST_33276 126139453 4840432 complement(192162..193775) 1 NC_009047.1 predicted protein 193775 4840432 PICST_33276 Pichia stipitis CBS 6054 predicted protein XP_001386249.1 192162 R 322104 CDS PICST_68263 150866447 4840754 join(194940..194963,195222..198773) 1 NC_009047.1 hypothetical protein putative xylanase/chitin deacetylase 198773 XYC1 4840754 XYC1 Pichia stipitis CBS 6054 hypothetical protein putative xylanase/chitin deacetylase XP_001386053.2 194940 D 322104 CDS PICST_73507 150866448 4840433 199372..204306 1 NC_009047.1 alpha subunit of RNA polymerase I (RPB1) [EC:2.7.7.6] [KO:K00960]; go_component: nucleus; go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; alpha subunit of RNA polymerase I 204306 RPA190 4840433 RPA190 Pichia stipitis CBS 6054 alpha subunit of RNA polymerase I XP_001386054.2 199372 D 322104 CDS PICST_33279 150866449 4840434 204660..205625 1 NC_009047.1 predicted protein 205625 4840434 PICST_33279 Pichia stipitis CBS 6054 predicted protein XP_001386055.2 204660 D 322104 CDS PICST_49481 126139455 4840766 complement(205704..>206135) 1 NC_009047.1 predicted protein >206135 4840766 PICST_49481 Pichia stipitis CBS 6054 predicted protein XP_001386250.1 205704 R 322104 CDS PICST_85050 150866450 4840755 join(208095..208823,208869..208952) 1 NC_009047.1 predicted protein 208952 4840755 PICST_85050 Pichia stipitis CBS 6054 predicted protein XP_001386056.2 208095 D 322104 CDS PICST_49775 126139457 4840767 complement(209322..209786) 1 NC_009047.1 predicted protein 209786 4840767 PICST_49775 Pichia stipitis CBS 6054 predicted protein XP_001386251.1 209322 R 322104 CDS PICST_91057 126139069 4840458 join(210795..210821,211189..212250) 1 NC_009047.1 Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial precursor (Isocitric dehydrogenase) (NAD(+)-specific ICDH); go_function: oxidoreductase activity; go_process: metabolism; isocitrate dehydrogenase 212250 IDH1 4840458 IDH1 Pichia stipitis CBS 6054 isocitrate dehydrogenase XP_001386057.1 210795 D 322104 CDS PICST_85387 126139071 4840768 213156..214448 1 NC_009047.1 go_function: adenylosuccinate synthase activity; GTP binding; go_process: purine nucleotide biosynthesis; predicted protein 214448 4840768 PICST_85387 Pichia stipitis CBS 6054 predicted protein XP_001386058.1 213156 D 322104 CDS PICST_5163 126139073 4840769 join(<215553..215939,216000..>216605) 1 NC_009047.1 predicted protein 215939 4840769 PICST_5163 Pichia stipitis CBS 6054 predicted protein XP_001386059.1 <215553 D 322104 CDS PICST_33287 150866599 4840770 complement(218651..219112) 1 NC_009047.1 predicted protein 219112 4840770 PICST_33287 Pichia stipitis CBS 6054 predicted protein XP_001386252.2 218651 R 322104 CDS PICST_85406 150866451 4840459 219647..221989 1 NC_009047.1 predicted protein 221989 4840459 PICST_85406 Pichia stipitis CBS 6054 predicted protein XP_001386060.2 219647 D 322104 CDS PICST_63063 150866600 4840771 complement(222151..222477) 1 NC_009047.1 predicted protein 222477 4840771 PICST_63063 Pichia stipitis CBS 6054 predicted protein XP_001386253.2 222151 R 322104 CDS PICST_91065 126139463 4840460 complement(222916..224454) 1 NC_009047.1 Anthranilate synthase component II [Includes: Glutamine amidotransferase Indole-3-glycerol phosphate synthase (PRAI)] (TRPG); go_function: catalytic activity; indole-3-glycerol-phosphate synthase activity; go_process: tryptophan metabolism; Anthranilate synthase component II Includes: Glutamine amidotransferase Indole-3-glycerol phosphate synthase (PRAI) 224454 TRP6 4840460 TRP6 Pichia stipitis CBS 6054 Anthranilate synthase component II Includes: Glutamine amidotransferase Indole-3-glycerol phosphate synthase (PRAI) XP_001386254.1 222916 R 322104 CDS PICST_66043 150866601 4840461 complement(join(224755..224921,224980..224984,225044..227901)) 1 NC_009047.1 go_function: hydrolase activity; go_process: nucleotide metabolism; predicted protein 227901 4840461 PICST_66043 Pichia stipitis CBS 6054 predicted protein XP_001386255.2 224755 R 322104 CDS PICST_33291 150866452 4840462 228544..229632 1 NC_009047.1 predicted protein 229632 4840462 PICST_33291 Pichia stipitis CBS 6054 predicted protein XP_001386061.2 228544 D 322104 CDS PICST_49716 150866602 4840772 complement(229763..231559) 1 NC_009047.1 predicted protein 231559 4840772 PICST_49716 Pichia stipitis CBS 6054 predicted protein XP_001386256.2 229763 R 322104 CDS PICST_62909 150866453 4840463 233105..234079 1 NC_009047.1 predicted protein 234079 4840463 PICST_62909 Pichia stipitis CBS 6054 predicted protein XP_001386062.2 233105 D 322104 CDS PICST_73542 150866454 4840773 235679..239035 1 NC_009047.1 go_component: membrane; go_function: two-component response regulator activity; DNA binding; two-component sensor molecule activity; signal transducer activity; ATP binding; go_process: two-component signal transduction system (phosphorelay); regulation of transcription, DNA-dependent; signal transduction; histidine kinase osmosensor 239035 NIK1 4840773 NIK1 Pichia stipitis CBS 6054 histidine kinase osmosensor XP_001386063.2 235679 D 322104 CDS PICST_63574 126139083 4840774 239286..240560 1 NC_009047.1 predicted protein 240560 4840774 PICST_63574 Pichia stipitis CBS 6054 predicted protein XP_001386064.1 239286 D 322104 CDS PICST_63206 150866455 4840775 join(240792..240851,240888..244040) 1 NC_009047.1 go_function: nucleotide binding; DNA binding; DNA-directed DNA polymerase activity; 3'-5' exonuclease activity; go_process: DNA replication; DNA polymerase delta catalytic subunit (DNA polymerase III) 244040 DPOD 4840775 DPOD Pichia stipitis CBS 6054 DNA polymerase delta catalytic subunit (DNA polymerase III) XP_001386065.2 240792 D 322104 CDS PICST_66044 126139087 4840776 244327..244815 1 NC_009047.1 predicted protein 244815 4840776 PICST_66044 Pichia stipitis CBS 6054 predicted protein XP_001386066.1 244327 D 322104 CDS PICST_33298 126139089 4840777 245526..247823 1 NC_009047.1 predicted protein 247823 4840777 PICST_33298 Pichia stipitis CBS 6054 predicted protein XP_001386067.1 245526 D 322104 CDS PICST_49247 126139091 4840778 248095..249249 1 NC_009047.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; mitochondrial large ribosomal subunit 249249 MRP7 4840778 MRP7 Pichia stipitis CBS 6054 mitochondrial large ribosomal subunit XP_001386068.1 248095 D 322104 CDS PICST_36928 126139093 4840779 249453..250028 1 NC_009047.1 go_component: integral to membrane; predicted protein 250028 4840779 PICST_36928 Pichia stipitis CBS 6054 predicted protein XP_001386069.1 249453 D 322104 CDS PICST_85048 150866456 4840780 251218..254352 1 NC_009047.1 go_function: actin binding; phospholipid binding; predicted protein 254352 4840780 PICST_85048 Pichia stipitis CBS 6054 predicted protein XP_001386070.2 251218 D 322104 CDS PICST_33302 150866603 4840781 complement(join(255444..257730,258113..258135)) 1 NC_009047.1 predicted protein 258135 4840781 PICST_33302 Pichia stipitis CBS 6054 predicted protein XP_001386257.2 255444 R 322104 CDS PICST_33305 150866457 4840464 join(268360..268890,269486..269503) 1 NC_009047.1 Pichia stipitis transposon polyprotein 5 (Tps5) (TCA5)(TDH5) retrotransposon polyprotein; retrotransposon 269503 RTP1 4840464 RTP1 Pichia stipitis CBS 6054 retrotransposon XP_001386071.2 268360 D 322104 CDS PICST_14352 150866604 4840782 complement(<272888..>273466) 1 NC_009047.1 predicted protein >273466 4840782 PICST_14352 Pichia stipitis CBS 6054 predicted protein XP_001386258.2 <272888 R 322104 CDS PICST_73528 150866605 4840465 complement(289745..>289945) 1 NC_009047.1 predicted protein >289945 4840465 PICST_73528 Pichia stipitis CBS 6054 predicted protein XP_001386259.2 289745 R 322104 CDS PICST_33311 150866606 4840466 complement(299534..301525) 1 NC_009047.1 predicted protein 301525 4840466 PICST_33311 Pichia stipitis CBS 6054 predicted protein XP_001386260.2 299534 R 322104 CDS PICST_73701 126139099 4840467 302545..303960 1 NC_009047.1 go_function: hexokinase activity; ATP binding; go_process: glycolysis; Glucokinase 303960 GLK1 4840467 GLK1 Pichia stipitis CBS 6054 Glucokinase XP_001386072.1 302545 D 322104 CDS PICST_49945 150866458 4840783 304203..305633 1 NC_009047.1 go_component: membrane; predicted protein 305633 4840783 PICST_49945 Pichia stipitis CBS 6054 predicted protein XP_001386073.2 304203 D 322104 CDS PICST_33314 150866607 4840784 complement(305721..308363) 1 NC_009047.1 go_process: intracellular signaling cascade; predicted protein 308363 4840784 PICST_33314 Pichia stipitis CBS 6054 predicted protein XP_001386261.2 305721 R 322104 CDS PICST_73592 150866608 4840468 complement(308637..310856) 1 NC_009047.1 predicted protein 310856 4840468 PICST_73592 Pichia stipitis CBS 6054 predicted protein XP_001386262.2 308637 R 322104 CDS PICST_62979 126139103 4840469 311116..311658 1 NC_009047.1 go_function: GTP binding; predicted protein 311658 4840469 PICST_62979 Pichia stipitis CBS 6054 predicted protein XP_001386074.1 311116 D 322104 CDS PICST_63463 150866459 4840641 312828..313652 1 NC_009047.1 go_function: catalytic activity; go_process: metabolism; predicted protein 313652 4840641 PICST_63463 Pichia stipitis CBS 6054 predicted protein XP_001386075.2 312828 D 322104 CDS PICST_63276 150866460 4840642 join(314509..314611,314654..315652,315680..316743) 1 NC_009047.1 go_function: molecular function unknown; predicted protein 316743 4840642 PICST_63276 Pichia stipitis CBS 6054 predicted protein XP_001386076.2 314509 D 322104 CDS PICST_33319 150866609 4840643 complement(316805..324031) 1 NC_009047.1 predicted protein 324031 4840643 PICST_33319 Pichia stipitis CBS 6054 predicted protein XP_001386263.2 316805 R 322104 CDS PICST_63549 150866461 4840470 324539..326671 1 NC_009047.1 predicted protein 326671 4840470 PICST_63549 Pichia stipitis CBS 6054 predicted protein XP_001386077.2 324539 D 322104 CDS PICST_90811 150866462 4840644 327572..329311 1 NC_009047.1 catalyses the committed step in sphingolipid synthesis, the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine; serine palmitoyltransferase component 329311 LCB1 4840644 LCB1 Pichia stipitis CBS 6054 serine palmitoyltransferase component XP_001386078.2 327572 D 322104 CDS PICST_63396 150866610 4840645 complement(join(329456..329742,329776..330769,330818..331192)) 1 NC_009047.1 go_component: anaphase-promoting complex; go_process: regulation of mitotic metaphase/anaphase transition; predicted protein 331192 4840645 PICST_63396 Pichia stipitis CBS 6054 predicted protein XP_001386264.2 329456 R 322104 CDS PICST_85054 150866463 4840471 331434..332588 1 NC_009047.1 predicted protein 332588 4840471 PICST_85054 Pichia stipitis CBS 6054 predicted protein XP_001386079.2 331434 D 322104 CDS PICST_49478 126139485 4840646 complement(332722..333117) 1 NC_009047.1 go_function: molecular function unknown; predicted protein 333117 4840646 PICST_49478 Pichia stipitis CBS 6054 predicted protein XP_001386265.1 332722 R 322104 CDS PICST_36940 150866611 4840472 complement(join(333467..335336,335424..337027)) 1 NC_009047.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 337027 4840472 PICST_36940 Pichia stipitis CBS 6054 predicted protein XP_001386266.2 333467 R 322104 CDS PICST_49751 150866612 4840473 complement(<337307..338017) 1 NC_009047.1 predicted protein 338017 4840473 PICST_49751 Pichia stipitis CBS 6054 predicted protein XP_001386267.2 <337307 R 322104 CDS PICST_85181 126139115 4840474 340060..342402 1 NC_009047.1 go_function: lyase activity; hydro-lyase activity; go_process: metabolism; Aconitase, mitochondrial 342402 ACO1 4840474 ACO1 Pichia stipitis CBS 6054 Aconitase, mitochondrial XP_001386080.1 340060 D 322104 CDS PICST_33327 150866613 4840647 complement(342632..343246) 1 NC_009047.1 predicted protein 343246 4840647 PICST_33327 Pichia stipitis CBS 6054 predicted protein XP_001386268.2 342632 R 322104 CDS PICST_50119 150866464 4840517 343873..345042 1 NC_009047.1 predicted protein 345042 4840517 PICST_50119 Pichia stipitis CBS 6054 predicted protein XP_001386081.2 343873 D 322104 CDS PICST_33329 150866465 4840648 345185..346771 1 NC_009047.1 hypothetical protein 346771 4840648 PICST_33329 Pichia stipitis CBS 6054 hypothetical protein XP_001386082.2 345185 D 322104 CDS PICST_79644 150866614 4840649 complement(346873..349191) 1 NC_009047.1 predicted protein 349191 4840649 PICST_79644 Pichia stipitis CBS 6054 predicted protein XP_001386269.2 346873 R 322104 CDS PICST_79239 150866615 4840518 complement(350621..356353) 1 NC_009047.1 go_function: phosphotransferase activity, alcohol group as acceptor; inositol or phosphatidylinositol kinase activity; phosphatidylinositol-4- kinase involved in protein kinase C pathway 356353 STT4 4840518 STT4 Pichia stipitis CBS 6054 phosphatidylinositol-4- kinase involved in protein kinase C pathway XP_001386270.2 350621 R 322104 CDS PICST_66051 126139497 4840519 complement(356926..357663) 1 NC_009047.1 go_function: translation initiation factor activity; go_process: translational initiation; predicted protein 357663 4840519 PICST_66051 Pichia stipitis CBS 6054 predicted protein XP_001386271.1 356926 R 322104 CDS PICST_33333 150866466 4840520 358237..359199 1 NC_009047.1 predicted protein 359199 4840520 PICST_33333 Pichia stipitis CBS 6054 predicted protein XP_001386083.2 358237 D 322104 CDS PICST_85379 126139499 4840650 complement(359322..362030) 1 NC_009047.1 go_function: ATP binding; predicted protein 362030 4840650 PICST_85379 Pichia stipitis CBS 6054 predicted protein XP_001386272.1 359322 R 322104 CDS PICST_33338 150866467 4840521 363928..364842 1 NC_009047.1 predicted protein 364842 4840521 PICST_33338 Pichia stipitis CBS 6054 predicted protein XP_001386084.2 363928 D 322104 CDS PICST_90941 150866468 4840651 join(365722..366957,367027..367125) 1 NC_009047.1 go_component: nucleus; go_function: DNA binding; protein (LSR1 protein) 367125 GTS1 4840651 GTS1 Pichia stipitis CBS 6054 protein (LSR1 protein) XP_001386085.2 365722 D 322104 CDS PICST_36948 126139127 4840652 368754..370331 1 NC_009047.1 high-affinity hexose (glucose) transporter (HXT1); go_component: integral to membrane; go_function: transporter activity; go_process: transport; high-affinity hexose (glucose) transporter 370331 QUP2 4840652 QUP2 Pichia stipitis CBS 6054 high-affinity hexose (glucose) transporter XP_001386086.1 368754 D 322104 CDS PICST_90828 126139129 4840653 371112..373211 1 NC_009047.1 go_function: oxidoreductase activity; go_process: electron transport; long chain fatty acid oxidase 373211 FAO1 4840653 FAO1 Pichia stipitis CBS 6054 long chain fatty acid oxidase XP_001386087.1 371112 D 322104 CDS PICST_49706 150866616 4840654 complement(373408..373869) 1 NC_009047.1 predicted protein 373869 4840654 PICST_49706 Pichia stipitis CBS 6054 predicted protein XP_001386273.2 373408 R 322104 CDS PICST_85176 150866469 4840522 join(374683..375825,375844..376284,376338..376354,376458..376938) 1 NC_009047.1 predicted protein 376938 4840522 PICST_85176 Pichia stipitis CBS 6054 predicted protein XP_001386088.2 374683 D 322104 CDS PICST_68294 150866470 4840655 378459..381488 1 NC_009047.1 Calponin Calponin family repeat; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 381488 MSN2 4840655 MSN2 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001386089.2 378459 D 322104 CDS PICST_85279 150866617 4840656 complement(join(<382045..382761,382867..383116,383237..384147)) 1 NC_009047.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; Metallothionein expression activator 384147 ACE2 4840656 ACE2 Pichia stipitis CBS 6054 Metallothionein expression activator XP_001386274.2 <382045 R 322104 CDS PICST_68297 126139505 4840523 complement(385916..387232) 1 NC_009047.1 Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit); go_function: acyltransferase activity; go_process: metabolism; 2-oxoglutarate dehydrogenase complex E2 component 387232 KGD2 4840523 KGD2 Pichia stipitis CBS 6054 2-oxoglutarate dehydrogenase complex E2 component XP_001386275.1 385916 R 322104 CDS PICST_36951 126139135 4840524 389423..390856 1 NC_009047.1 dihydrolipoamide dehydrogenase; contains a pair of redox-active cysteines involved in the transfer of reducing equivalents from the FAD cofactor to the substrate; go_component: cytoplasm; go_function: disulfide oxidoreductase activity; oxidoreductase activity; go_process: electron transport; FAD flavoprotein 390856 LPD1 4840524 LPD1 Pichia stipitis CBS 6054 FAD flavoprotein XP_001386090.1 389423 D 322104 CDS PICST_62940 150866471 4840657 391145..391900 1 NC_009047.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 391900 4840657 PICST_62940 Pichia stipitis CBS 6054 predicted protein XP_001386091.2 391145 D 322104 CDS PICST_36953 150866472 4840658 392416..393402 1 NC_009047.1 go_function: oxidoreductase activity; go_process: metabolism; 3-ketosphinganine reductase 393402 TSC10 4840658 TSC10 Pichia stipitis CBS 6054 3-ketosphinganine reductase XP_001386092.2 392416 D 322104 CDS PICST_49885 126139507 4840659 complement(393605..393976) 1 NC_009047.1 predicted protein 393976 4840659 PICST_49885 Pichia stipitis CBS 6054 predicted protein XP_001386276.1 393605 R 322104 CDS PICST_90761 150866618 4840525 complement(396978..397877) 1 NC_009047.1 predicted protein 397877 4840525 PICST_90761 Pichia stipitis CBS 6054 predicted protein XP_001386277.2 396978 R 322104 CDS PICST_63621 150866473 4840526 398110..398376 1 NC_009047.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; predicted protein 398376 4840526 PICST_63621 Pichia stipitis CBS 6054 predicted protein XP_001386093.2 398110 D 322104 CDS PICST_49747 150866619 4840675 complement(398617..399513) 1 NC_009047.1 predicted protein 399513 4840675 PICST_49747 Pichia stipitis CBS 6054 predicted protein XP_001386278.2 398617 R 322104 CDS PICST_33355 150866474 4840527 join(399988..402058,402119..402255) 1 NC_009047.1 predicted protein 402255 4840527 PICST_33355 Pichia stipitis CBS 6054 predicted protein XP_001386094.2 399988 D 322104 CDS PICST_33357 150866620 4840676 complement(405241..407370) 1 NC_009047.1 predicted protein 407370 4840676 PICST_33357 Pichia stipitis CBS 6054 predicted protein XP_001386279.2 405241 R 322104 CDS PICST_33358 150866621 4840528 complement(407631..412271) 1 NC_009047.1 go_function: catalytic activity; nutrient reservoir activity; predicted protein 412271 4840528 PICST_33358 Pichia stipitis CBS 6054 predicted protein XP_001386280.2 407631 R 322104 CDS PICST_63214 150866622 4840529 complement(join(412966..414334,414362..414441,414457..414609)) 1 NC_009047.1 go_function: transaminase activity; go_process: biosynthesis; predicted protein 414609 4840529 PICST_63214 Pichia stipitis CBS 6054 predicted protein XP_001386281.2 412966 R 322104 CDS PICST_49718 150866475 4840530 join(<419255..420037,420137..421177) 1 NC_009047.1 F-box/LRR-repeat protein 421177 FBX2 4840530 FBX2 Pichia stipitis CBS 6054 F-box/LRR-repeat protein XP_001386095.2 <419255 D 322104 CDS PICST_33361 150866476 4840677 421661..422887 1 NC_009047.1 protein serine/threonine kinase activity 422887 4840677 PICST_33361 Pichia stipitis CBS 6054 protein serine/threonine kinase activity XP_001386096.2 421661 D 322104 CDS PICST_90939 126139149 4840678 423326..424459 1 NC_009047.1 Chorismate synthase (5-enolpyruvylshikimate-3-phosphate phospholyase) (AROC); go_component: extracellular region; go_function: neurohypophyseal hormone activity; chorismate synthase activity; go_process: aromatic amino acid family biosynthesis; Chorismate synthase 424459 AROC 4840678 AROC Pichia stipitis CBS 6054 Chorismate synthase XP_001386097.1 423326 D 322104 CDS PICST_33363 150866623 4840679 complement(424746..425294) 1 NC_009047.1 predicted protein 425294 4840679 PICST_33363 Pichia stipitis CBS 6054 predicted protein XP_001386282.2 424746 R 322104 CDS PICST_91130 150866477 4840531 426012..426614 1 NC_009047.1 Endosomal P24B protein precursor (24 kDa endomembrane protein) (Basic 24 kDa late endocytic intermediate component); go_component: membrane; go_function: protein carrier activity; go_process: intracellular protein transport; protein carrier activity 426614 EMP24 4840531 EMP24 Pichia stipitis CBS 6054 protein carrier activity XP_001386098.2 426012 D 322104 CDS PICST_66059 150866478 4840680 429862..431109 1 NC_009047.1 Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1; go_function: transaminase activity; go_process: biosynthesis; aspartate aminotransferase 431109 AAT2 4840680 AAT2 Pichia stipitis CBS 6054 aspartate aminotransferase XP_001386099.2 429862 D 322104 CDS PICST_73895 126139521 4840681 complement(join(431494..431739,432192..432194)) 1 NC_009047.1 structural constituent of ribosome; go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S27-B (YS20) (RP61) 432194 RS27B 4840681 RS27B Pichia stipitis CBS 6054 40S ribosomal protein S27-B (YS20) (RP61) XP_001386283.1 431494 R 322104 CDS PICST_85252 126139523 4840532 complement(433758..434744) 1 NC_009047.1 Serine/threonine protein phosphatase; go_function: hydrolase activity; protein phosphatase type I 434744 GLC7 4840532 GLC7 Pichia stipitis CBS 6054 protein phosphatase type I XP_001386284.1 433758 R 322104 CDS PICST_63068 150866479 4840475 join(436578..436873,436904..437207) 1 NC_009047.1 predicted protein 437207 4840475 PICST_63068 Pichia stipitis CBS 6054 predicted protein XP_001386100.2 436578 D 322104 CDS PICST_63552 150866624 4840682 complement(437464..438336) 1 NC_009047.1 hypothetical protein 438336 4840682 PICST_63552 Pichia stipitis CBS 6054 hypothetical protein XP_001386285.2 437464 R 322104 CDS PICST_63333 126139157 4840476 join(438943..439002,439057..439215) 1 NC_009047.1 predicted protein 439215 4840476 PICST_63333 Pichia stipitis CBS 6054 predicted protein XP_001386101.1 438943 D 322104 CDS PICST_49236 126139527 4840683 complement(439830..440009) 1 NC_009047.1 carries out complex cyclization step of squalene to lanosterol in sterol biosynthesis pathway; H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family A member 3) (snoRNP protein NOP10) 440009 NOP10 4840683 NOP10 Pichia stipitis CBS 6054 H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family A member 3) (snoRNP protein NOP10) XP_001386286.1 439830 R 322104 CDS PICST_66061 150866480 4840477 join(440873..441993,442015..442019,442122..443248) 1 NC_009047.1 auxilin-like clathrin-binding protein required for normal clathrin function 443248 SWA2 4840477 SWA2 Pichia stipitis CBS 6054 auxilin-like clathrin-binding protein required for normal clathrin function XP_001386102.2 440873 D 322104 CDS PICST_90967 150866481 4840684 443611..444798 1 NC_009047.1 Putative trehalase 444798 4840684 PICST_90967 Pichia stipitis CBS 6054 Putative trehalase XP_001386103.2 443611 D 322104 CDS PICST_90814 150866625 4840685 complement(444915..446612) 1 NC_009047.1 Malate synthase 1, glyoxysomal carbon-catabolite sensitive malate synthase in S. cerevisiae; go_function: malate synthase activity; go_process: glyoxylate cycle; tricarboxylic acid cycle; Malate synthase 1, glyoxysomal (MAS) (DAL7) 446612 MLS1.2 4840685 MLS1.2 Pichia stipitis CBS 6054 Malate synthase 1, glyoxysomal (MAS) (DAL7) XP_001386287.2 444915 R 322104 CDS PICST_36967 126139531 4840478 complement(447982..448905) 1 NC_009047.1 predicted protein 448905 4840478 PICST_36967 Pichia stipitis CBS 6054 predicted protein XP_001386288.1 447982 R 322104 CDS PICST_63641 126139533 4840479 complement(449364..450011) 1 NC_009047.1 involved in vacuolar protein sorting and endocytosis post vesicle internalization; go_function: GTP binding; go_process: small GTPase mediated signal transduction; Rab5-like GTPase 450011 VPS21 4840479 VPS21 Pichia stipitis CBS 6054 Rab5-like GTPase XP_001386289.1 449364 R 322104 CDS PICST_36969 150866482 4840480 join(457638..457911,457984..458684) 1 NC_009047.1 go_function: protein tyrosine phosphatase activity; go_process: protein amino acid dephosphorylation; predicted protein 458684 4840480 PICST_36969 Pichia stipitis CBS 6054 predicted protein XP_001386104.2 457638 D 322104 CDS PICST_33377 150866483 4840686 458902..459951 1 NC_009047.1 go_function: nucleic acid binding; predicted protein 459951 4840686 PICST_33377 Pichia stipitis CBS 6054 predicted protein XP_001386105.2 458902 D 322104 CDS PICST_79362 126139167 4840687 460467..462308 1 NC_009047.1 heat shock protein of the HSP70 family most prevalant transcript on glucose under aerobic conditions; heat shock protein of the HSP70 family (SSB1) (HSP75) 462308 HSP70.1 4840687 HSP70.1 Pichia stipitis CBS 6054 heat shock protein of the HSP70 family (SSB1) (HSP75) XP_001386106.1 460467 D 322104 CDS PICST_33379 150866626 4840688 complement(462546..463814) 1 NC_009047.1 go_function: molecular function unknown; predicted protein 463814 4840688 PICST_33379 Pichia stipitis CBS 6054 predicted protein XP_001386290.2 462546 R 322104 CDS PICST_63669 150866484 4840481 join(465217..465234,465291..466631) 1 NC_009047.1 go_component: membrane; go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 466631 4840481 PICST_63669 Pichia stipitis CBS 6054 predicted protein XP_001386107.2 465217 D 322104 CDS PICST_33381 150866485 4840723 466998..467405 1 NC_009047.1 predicted protein 467405 4840723 PICST_33381 Pichia stipitis CBS 6054 predicted protein XP_001386108.2 466998 D 322104 CDS PICST_33382 150866627 4840724 complement(469743..470558) 1 NC_009047.1 predicted protein 470558 4840724 PICST_33382 Pichia stipitis CBS 6054 predicted protein XP_001386291.2 469743 R 322104 CDS PICST_33383 150866486 4840482 471737..472261 1 NC_009047.1 predicted protein 472261 4840482 PICST_33383 Pichia stipitis CBS 6054 predicted protein XP_001386109.2 471737 D 322104 CDS PICST_49558 150866628 4840725 complement(join(472682..473622,473689..473998)) 1 NC_009047.1 predicted protein 473998 4840725 PICST_49558 Pichia stipitis CBS 6054 predicted protein XP_001386292.2 472682 R 322104 CDS PICST_63545 150866487 4840483 join(475614..475923,475990..476930) 1 NC_009047.1 predicted protein 476930 4840483 PICST_63545 Pichia stipitis CBS 6054 predicted protein XP_001386110.2 475614 D 322104 CDS PICST_33386 150866629 4840726 complement(477351..477875) 1 NC_009047.1 predicted protein 477875 4840726 PICST_33386 Pichia stipitis CBS 6054 predicted protein XP_001386293.2 477351 R 322104 CDS PICST_33387 150866488 4840484 479054..479869 1 NC_009047.1 predicted protein 479869 4840484 PICST_33387 Pichia stipitis CBS 6054 predicted protein XP_001386111.2 479054 D 322104 CDS PICST_68309 150866630 4840727 complement(486048..488831) 1 NC_009047.1 predicted protein 488831 4840727 PICST_68309 Pichia stipitis CBS 6054 predicted protein XP_001386294.2 486048 R 322104 CDS PICST_63750 150866489 4840485 490772..492415 1 NC_009047.1 multidrug resistance protein 6 benomyl/methotrexate resistance protein 492415 MDR16 4840485 MDR16 Pichia stipitis CBS 6054 multidrug resistance protein 6 benomyl/methotrexate resistance protein XP_001386112.2 490772 D 322104 CDS PICST_63799 150866490 4840728 493576..494439 1 NC_009047.1 predicted protein 494439 4840728 PICST_63799 Pichia stipitis CBS 6054 predicted protein XP_001386113.2 493576 D 322104 CDS PICST_91557 150866491 4840729 495820..497544 1 NC_009047.1 Pichia stiptis virus 1 PsVirus1 Major viral coat protein GAG1 (MCP) similar to Saccharomyces cerevisiae virus L-A (L1) with sequence similarity to similar; Major viral coat protein 497544 PSV1 4840729 PSV1 Pichia stipitis CBS 6054 Major viral coat protein XP_001386114.2 495820 D 322104 CDS PICST_91558 150866492 4840730 498357..>500276 1 NC_009047.1 Pichia stiptis virus 1 MCP2 1-650 aa: major coat protein 600-end: ssRNA-binding protein - IMP dehydrogenase/GMP reductase; major coat protein/ssRNA-binding protein - IMP dehydrogenase/GMP reductase >500276 PSV2 4840730 PSV2 Pichia stipitis CBS 6054 major coat protein/ssRNA-binding protein - IMP dehydrogenase/GMP reductase XP_001386115.2 498357 D 322104 CDS PICST_85261 126139187 4840731 510586..510945 1 NC_009047.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein S20 510945 RPS20 4840731 RPS20 Pichia stipitis CBS 6054 ribosomal protein S20 XP_001386116.1 510586 D 322104 CDS PICST_36975 150866493 4840732 join(511891..512000,512145..513816) 1 NC_009047.1 go_function: catalytic activity; predicted protein 513816 4840732 PICST_36975 Pichia stipitis CBS 6054 predicted protein XP_001386117.2 511891 D 322104 CDS PICST_85253 126139191 4840733 join(514632..514863,514888..515651) 1 NC_009047.1 go_component: peroxisome; 40 kDa farnesylated protein associated with peroxisomes 515651 PEX19 4840733 PEX19 Pichia stipitis CBS 6054 40 kDa farnesylated protein associated with peroxisomes XP_001386118.1 514632 D 322104 CDS PICST_90881 150866631 4840734 complement(515939..518305) 1 NC_009047.1 go_function: ATP binding; AAA+-type ATPase 518305 AFG2 4840734 AFG2 Pichia stipitis CBS 6054 AAA+-type ATPase XP_001386295.2 515939 R 322104 CDS PICST_85287 150866632 4840486 complement(join(519794..521919,521953..522904,522938..523579)) 1 NC_009047.1 go_function: nucleic acid binding; helicase activity; ATP binding; predicted protein 523579 4840486 PICST_85287 Pichia stipitis CBS 6054 predicted protein XP_001386296.2 519794 R 322104 CDS PICST_85060 126139193 4840487 524162..524638 1 NC_009047.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 524638 4840487 PICST_85060 Pichia stipitis CBS 6054 predicted protein XP_001386119.1 524162 D 322104 CDS PICST_68318 150866633 4840735 complement(525124..526494) 1 NC_009047.1 fructose-2,6-bisphosphatase (FBP26) (FRK26); go_function: catalytic activity; ATP binding; go_process: metabolism; fructose 2,6-bisphosphate metabolism; fructose-2,6-bisphosphatase (FBP26) 526494 FBP26 4840735 FBP26 Pichia stipitis CBS 6054 fructose-2,6-bisphosphatase (FBP26) XP_001386297.2 525124 R 322104 CDS PICST_62920 150866494 4840488 join(<528162..529441,529469..529574,529623..529913) 1 NC_009047.1 go_function: hydrolase activity; predicted protein 529913 4840488 PICST_62920 Pichia stipitis CBS 6054 predicted protein XP_001386120.2 <528162 D 322104 CDS PICST_36980 150866634 4840736 complement(join(530026..530543,530614..530638)) 1 NC_009047.1 predicted protein 530638 4840736 PICST_36980 Pichia stipitis CBS 6054 predicted protein XP_001386298.2 530026 R 322104 CDS PICST_66069 150866495 4840489 join(532885..532997,533085..533306,533502..533756,533790..533977,534041..534227,534276..534711) 1 NC_009047.1 asymetrically localized transcriptional regulator that controls filamentous growth; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; GATA-type transcription factor 534711 ASH1 4840489 ASH1 Pichia stipitis CBS 6054 GATA-type transcription factor XP_001386121.2 532885 D 322104 CDS PICST_85034 150866496 4840737 join(535408..536110,536132..536514) 1 NC_009047.1 predicted protein 536514 4840737 PICST_85034 Pichia stipitis CBS 6054 predicted protein XP_001386122.2 535408 D 322104 CDS PICST_63446 150866497 4840738 join(536838..537545,537699..>538082) 1 NC_009047.1 predicted protein 537545 4840738 PICST_63446 Pichia stipitis CBS 6054 predicted protein XP_001386123.2 536838 D 322104 CDS PICST_63737 126139553 4840706 complement(539917..>540240) 1 NC_009047.1 predicted protein >540240 4840706 PICST_63737 Pichia stipitis CBS 6054 predicted protein XP_001386299.1 539917 R 322104 CDS PICST_63741 150866635 4840490 complement(542909..545650) 1 NC_009047.1 predicted protein 545650 4840490 PICST_63741 Pichia stipitis CBS 6054 predicted protein XP_001386300.2 542909 R 322104 CDS PICST_33409 150866636 4840491 complement(548339..548971) 1 NC_009047.1 predicted protein 548971 4840491 PICST_33409 Pichia stipitis CBS 6054 predicted protein XP_001386301.2 548339 R 322104 CDS PICST_33410 150866637 4840435 complement(550039..551076) 1 NC_009047.1 go_component: membrane; go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 551076 4840435 PICST_33410 Pichia stipitis CBS 6054 predicted protein XP_001386302.2 550039 R 322104 CDS PICST_50085 126139203 4840436 563841..566576 1 NC_009047.1 predicted protein 566576 4840436 PICST_50085 Pichia stipitis CBS 6054 predicted protein XP_001386124.1 563841 D 322104 CDS PICST_79556 126139561 4840707 complement(567679..568467) 1 NC_009047.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; RNA binding; go_process: protein biosynthesis; predicted protein 568467 4840707 PICST_79556 Pichia stipitis CBS 6054 predicted protein XP_001386303.1 567679 R 322104 CDS PICST_85359 150866638 4840437 complement(join(569169..569331,569386..569789,569826..570860,570879..571202)) 1 NC_009047.1 predicted protein 571202 4840437 PICST_85359 Pichia stipitis CBS 6054 predicted protein XP_001386304.2 569169 R 322104 CDS PICST_63766 150866639 4840438 complement(576064..578412) 1 NC_009047.1 predicted protein 578412 4840438 PICST_63766 Pichia stipitis CBS 6054 predicted protein XP_001386305.2 576064 R 322104 CDS PICST_73580 150866640 4840439 complement(582881..585229) 1 NC_009047.1 predicted protein 585229 4840439 PICST_73580 Pichia stipitis CBS 6054 predicted protein XP_001386306.2 582881 R 322104 CDS PICST_73698 150866641 4840440 complement(587282..588817) 1 NC_009047.1 predicted protein 588817 4840440 PICST_73698 Pichia stipitis CBS 6054 predicted protein XP_001386307.2 587282 R 322104 CDS PICST_33418 150866642 4840441 complement(589050..590234) 1 NC_009047.1 predicted protein 590234 4840441 PICST_33418 Pichia stipitis CBS 6054 predicted protein XP_001386308.2 589050 R 322104 CDS PICST_33419 150866498 4840442 591080..592927 1 NC_009047.1 predicted protein 592927 4840442 PICST_33419 Pichia stipitis CBS 6054 predicted protein XP_001386125.2 591080 D 322104 CDS PICST_63118 150866643 4840708 complement(join(593060..593210,593280..594012,594034..594301,594368..594568,594596..>596425)) 1 NC_009047.1 transcriptional regulation; affects chromatin structure, transcriptional regulation of diverse genes and sporulation, required for glucose repression, HO repression, RME1 repression and sporulation; Regulator of Glucose Repression (transcriptional regulation Mediator complex subunit RGR1; Glucose repression regulatory protein) 594568 RGR1 4840708 RGR1 Pichia stipitis CBS 6054 Regulator of Glucose Repression (transcriptional regulation Mediator complex subunit RGR1; Glucose repression regulatory protein) XP_001386309.2 593060 R 322104 CDS PICST_2520 150866644 4840443 complement(<597481..>598722) 1 NC_009047.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein >598722 4840443 PICST_2520 Pichia stipitis CBS 6054 predicted protein XP_001386310.2 <597481 R 322104 CDS PICST_79392 150866645 4840444 complement(<598810..>599070) 1 NC_009047.1 predicted protein >599070 4840444 PICST_79392 Pichia stipitis CBS 6054 predicted protein XP_001386311.2 <598810 R 322104 CDS PICST_68327 150866499 4840445 601822..608460 1 NC_009047.1 hypothetical protein 608460 4840445 PICST_68327 Pichia stipitis CBS 6054 hypothetical protein XP_001386126.2 601822 D 322104 CDS PICST_68328 150866646 4840709 complement(610266..611747) 1 NC_009047.1 predicted protein 611747 4840709 PICST_68328 Pichia stipitis CBS 6054 predicted protein XP_001386312.2 610266 R 322104 CDS PICST_85423 150866647 4840446 complement(617838..618746) 1 NC_009047.1 go_function: aldose 1-epimerase activity; go_process: galactose metabolism; hypothetical uncharacterized conserved protein 618746 4840446 PICST_85423 Pichia stipitis CBS 6054 hypothetical uncharacterized conserved protein XP_001386313.2 617838 R 322104 CDS PICST_91106 126139209 4840447 620886..622355 1 NC_009047.1 predicted protein 622355 4840447 PICST_91106 Pichia stipitis CBS 6054 predicted protein XP_001386127.1 620886 D 322104 CDS PICST_62927 150866500 4840710 625510..>627141 1 NC_009047.1 predicted protein >627141 4840710 PICST_62927 Pichia stipitis CBS 6054 predicted protein XP_001386128.2 625510 D 322104 CDS PICST_33428 150866501 4840711 628798..630627 1 NC_009047.1 MDR transporter adjacent to AZR2; MDR transporter 630627 AZR1 4840711 AZR1 Pichia stipitis CBS 6054 MDR transporter XP_001386129.2 628798 D 322104 CDS PICST_33429 150866502 4840712 631297..633180 1 NC_009047.1 MDR transporter adjacent to AZR1; MDR transporter 633180 AZR2 4840712 AZR2 Pichia stipitis CBS 6054 MDR transporter XP_001386130.2 631297 D 322104 CDS PICST_49790 150866648 4840713 complement(join(633424..634563,634696..635007)) 1 NC_009047.1 Myosin-like protein NUF2 (Nuclear filament-containing protein 2) (Nuclear division protein NUF2) 635007 NUF2 4840713 NUF2 Pichia stipitis CBS 6054 Myosin-like protein NUF2 (Nuclear filament-containing protein 2) (Nuclear division protein NUF2) XP_001386314.2 633424 R 322104 CDS PICST_33431 150866503 4840448 635382..636530 1 NC_009047.1 occurs in multiple copies through genome; hypothetical multicopy protein 636530 HMC4 4840448 HMC4 Pichia stipitis CBS 6054 hypothetical multicopy protein XP_001386131.2 635382 D 322104 CDS PICST_73817 126139585 4840714 complement(636823..637578) 1 NC_009047.1 go_process: ubiquinone biosynthesis; DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 637578 CAT5 4840714 CAT5 Pichia stipitis CBS 6054 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 XP_001386315.1 636823 R 322104 CDS PICST_49700 150866649 4840449 complement(join(637969..638568,638767..638904)) 1 NC_009047.1 similar to YTHD2; uncharacterized conserved hypothetical protein 638904 4840449 PICST_49700 Pichia stipitis CBS 6054 uncharacterized conserved hypothetical protein XP_001386316.2 637969 R 322104 CDS PICST_63288 150866504 4840450 join(639399..639800,639837..640118) 1 NC_009047.1 go_process: mRNA processing; Probable RNA-binding protein 640118 RBM25 4840450 RBM25 Pichia stipitis CBS 6054 Probable RNA-binding protein XP_001386132.2 639399 D 322104 CDS PICST_68332 150866505 4840715 640760..642502 1 NC_009047.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; carbon catabolite derepressing ser/thr protein kinase 642502 SNF1 4840715 SNF1 Pichia stipitis CBS 6054 carbon catabolite derepressing ser/thr protein kinase XP_001386133.2 640760 D 322104 CDS PICST_49645 126139223 4840716 643763..>644788 1 NC_009047.1 go_component: chromatin silencing complex; go_function: DNA binding; go_process: chromatin silencing; regulation of transcription, DNA-dependent; NAD-dependent deacetylase HST3 (Homologous to SIR2 protein 3) >644788 HST3 4840716 HST3 Pichia stipitis CBS 6054 NAD-dependent deacetylase HST3 (Homologous to SIR2 protein 3) XP_001386134.1 643763 D 322104 CDS PICST_85290 150866506 4840717 join(646286..646435,646505..647615,647670..647974) 1 NC_009047.1 hypothetical protein 647974 4840717 PICST_85290 Pichia stipitis CBS 6054 hypothetical protein XP_001386135.2 646286 D 322104 CDS PICST_68335 150866650 4840718 complement(648222..648953) 1 NC_009047.1 Similar to SNM1 which has roles in both mitochondrial DNA replication and nuclear 5.8S rRNA processing; Similar to cyclic GMP-binding protein C; SNM1-like protein 648953 SNM1 4840718 SNM1 Pichia stipitis CBS 6054 SNM1-like protein XP_001386317.2 648222 R 322104 CDS PICST_62972 150866507 4840451 join(650572..650899,650945..651027,651046..652584) 1 NC_009047.1 putative transcription factor Suppressor protein SEF1 homolog; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; putative transcription factor 652584 SEF2 4840451 SEF2 Pichia stipitis CBS 6054 putative transcription factor XP_001386136.2 650572 D 322104 CDS PICST_63104 150866651 4840719 complement(652757..655435) 1 NC_009047.1 conserved hypothetical protein 655435 4840719 PICST_63104 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001386318.2 652757 R 322104 CDS PICST_36994 150866508 4840609 join(655708..655750,655902..656104) 1 NC_009047.1 go_component: integral to membrane; go_function: molecular function unknown; predicted protein 656104 4840609 PICST_36994 Pichia stipitis CBS 6054 predicted protein XP_001386137.2 655708 D 322104 CDS PICST_18070 150866652 4840720 complement(join(<656897..657798,657820..658375)) 1 NC_009047.1 predicted protein 658375 4840720 PICST_18070 Pichia stipitis CBS 6054 predicted protein XP_001386319.2 <656897 R 322104 CDS PICST_33443 150866653 4840610 complement(658513..659826) 1 NC_009047.1 go_function: metal ion binding; predicted protein 659826 4840610 PICST_33443 Pichia stipitis CBS 6054 predicted protein XP_001386320.2 658513 R 322104 CDS PICST_49633 150866509 4840611 660145..661194 1 NC_009047.1 go_component: nucleus; go_process: cell cycle; RNA polymerase II transcription factor B subunit 3 (RNA polymerase II transcription factor B p38 subunit) (RNA polymerase II transcription factor B 38 kDa subunit) 661194 TFB3 4840611 TFB3 Pichia stipitis CBS 6054 RNA polymerase II transcription factor B subunit 3 (RNA polymerase II transcription factor B p38 subunit) (RNA polymerase II transcription factor B 38 kDa subunit) XP_001386138.2 660145 D 322104 CDS PICST_66076 150866654 4840721 complement(join(661394..662098,662162..662710)) 1 NC_009047.1 arginine methyltransferase 662710 RMT2 4840721 RMT2 Pichia stipitis CBS 6054 arginine methyltransferase XP_001386321.2 661394 R 322104 CDS PICST_68338 150866510 4840612 665098..666402 1 NC_009047.1 hypothetical protein 666402 4840612 PICST_68338 Pichia stipitis CBS 6054 hypothetical protein XP_001386139.2 665098 D 322104 CDS PICST_63421 150866511 4840722 667560..669140 1 NC_009047.1 go_process: electron transport; Cytochrome P450 51 (CYPLI) (P450-LIA1) (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) 669140 CP51 4840722 CP51 Pichia stipitis CBS 6054 Cytochrome P450 51 (CYPLI) (P450-LIA1) (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) XP_001386140.2 667560 D 322104 CDS PICST_85224 126139237 4840689 670205..671266 1 NC_009047.1 go_function: ATP binding; kinase activity; go_process: phosphorylation; homoserine kinase 671266 THR1 4840689 THR1 Pichia stipitis CBS 6054 homoserine kinase XP_001386141.1 670205 D 322104 CDS PICST_85291 150866512 4840690 671570..673039 1 NC_009047.1 SAM50-like protein 673039 SAM50 4840690 SAM50 Pichia stipitis CBS 6054 SAM50-like protein XP_001386142.2 671570 D 322104 CDS PICST_33450 150866513 4840691 673373..675403 1 NC_009047.1 Exodeoxyribonuclease I (Exonuclease I) (EXO I) (DHS1 protein); go_function: nuclease activity; go_process: DNA repair; 5'-3' exonuclease 675403 EXO1 4840691 EXO1 Pichia stipitis CBS 6054 5'-3' exonuclease XP_001386143.2 673373 D 322104 CDS PICST_62985 150866655 4840692 complement(675508..676098) 1 NC_009047.1 conserved hypothetical protein 676098 4840692 PICST_62985 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001386322.2 675508 R 322104 CDS PICST_33452 150866514 4840613 676529..677959 1 NC_009047.1 Uncharacterized conserved protein 677959 4840613 PICST_33452 Pichia stipitis CBS 6054 Uncharacterized conserved protein XP_001386144.2 676529 D 322104 CDS PICST_49260 126139245 4840693 678396..679886 1 NC_009047.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; Mitochondrial processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) 679886 MAS2 4840693 MAS2 Pichia stipitis CBS 6054 Mitochondrial processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) XP_001386145.1 678396 D 322104 CDS PICST_66079 150866656 4840694 complement(join(679978..683016,683083..685668)) 1 NC_009047.1 Myo1 is a type II myosin, is localized to the actomyosin ring and is important for cytokinesis; go_component: myosin; go_function: motor activity; ATP binding; Myosin-1 (Type II myosin) 685668 MYO1 4840694 MYO1 Pichia stipitis CBS 6054 Myosin-1 (Type II myosin) XP_001386323.2 679978 R 322104 CDS PICST_37002 150866657 4840614 complement(join(686711..686798,686895..686997,687028..687424,687596..688411)) 1 NC_009047.1 go_component: nucleus; go_process: regulation of cell cycle; predicted protein 688411 4840614 PICST_37002 Pichia stipitis CBS 6054 predicted protein XP_001386324.2 686711 R 322104 CDS PICST_85255 126139605 4840615 complement(690851..692479) 1 NC_009047.1 predicted protein 692479 4840615 PICST_85255 Pichia stipitis CBS 6054 predicted protein XP_001386325.1 690851 R 322104 CDS PICST_63415 126139247 4840616 692805..693293 1 NC_009047.1 predicted protein 693293 4840616 PICST_63415 Pichia stipitis CBS 6054 predicted protein XP_001386146.1 692805 D 322104 CDS PICST_33458 150866658 4840695 complement(693506..695365) 1 NC_009047.1 predicted protein 695365 4840695 PICST_33458 Pichia stipitis CBS 6054 predicted protein XP_001386326.2 693506 R 322104 CDS PICST_33459 150866659 4840617 complement(695765..698155) 1 NC_009047.1 F-box protein: endocytic membrane traffic, recycling ReCYcling 1 698155 RCY1 4840617 RCY1 Pichia stipitis CBS 6054 F-box protein: endocytic membrane traffic, recycling ReCYcling 1 XP_001386327.2 695765 R 322104 CDS PICST_33460 150866515 4840618 698987..701440 1 NC_009047.1 predicted protein 701440 4840618 PICST_33460 Pichia stipitis CBS 6054 predicted protein XP_001386147.2 698987 D 322104 CDS PICST_33461 150866660 4840696 complement(join(701469..701507,701562..701907,701969..701994)) 1 NC_009047.1 Homeobox; Homeodomain protein that binds leu-tRNA gene. acts as a repressor at early cell cycle boxes (ECBs) to restrict their activity to the M/G1 phase of the cell cycle; go_component: nucleus; go_function: DNA binding; transcription factor activity; Homeodomain protein 701994 YOX2 4840696 YOX2 Pichia stipitis CBS 6054 Homeodomain protein XP_001386328.2 701469 R 322104 CDS PICST_33462 150866661 4840619 complement(join(702293..702628,702680..702973)) 1 NC_009047.1 mating locus regulatory protein 702973 MATa2 4840619 MATa2 Pichia stipitis CBS 6054 mating locus regulatory protein XP_001386329.2 702293 R 322104 CDS PICST_85400 126139251 4840620 703131..704801 1 NC_009047.1 go_function: nucleotidyltransferase activity; polynucleotide adenylyltransferase activity; go_process: transcription; Poly(A) polymerase PAPalpha (Polynucleotide adenylyltransferase alpha) 704801 PAP1 4840620 PAP1 Pichia stipitis CBS 6054 Poly(A) polymerase PAPalpha (Polynucleotide adenylyltransferase alpha) XP_001386148.1 703131 D 322104 CDS PICST_49430 150866662 4840697 complement(705685..708600) 1 NC_009047.1 catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-biphosphate may control cytokineses through the actin cytoskeleton; go_function: phosphotransferase activity, alcohol group as acceptor; Phosphatidylinositol 4-kinase PIK1alpha (PI4-kinase)(PtdIns-4-kinase) 708600 PIK1 4840697 PIK1 Pichia stipitis CBS 6054 Phosphatidylinositol 4-kinase PIK1alpha (PI4-kinase)(PtdIns-4-kinase) XP_001386330.2 705685 R 322104 CDS PICST_90914 150866663 4840621 complement(708913..710205) 1 NC_009047.1 go_process: steroid metabolism; Oxysterol binding protein-like protein OBPa 710205 OSH6 4840621 OSH6 Pichia stipitis CBS 6054 Oxysterol binding protein-like protein OBPa XP_001386331.2 708913 R 322104 CDS PICST_37009 150866664 4840622 complement(711199..712938) 1 NC_009047.1 go_component: membrane; go_process: transport; general amino acid permease 712938 GAP1.4 4840622 GAP1.4 Pichia stipitis CBS 6054 general amino acid permease XP_001386332.2 711199 R 322104 CDS PICST_49658 150866516 4840623 <715625..715930 1 NC_009047.1 predicted protein 715930 4840623 PICST_49658 Pichia stipitis CBS 6054 predicted protein XP_001386149.2 <715625 D 322104 CDS PICST_63418 126139255 4840698 717141..718355 1 NC_009047.1 predicted protein 718355 4840698 PICST_63418 Pichia stipitis CBS 6054 predicted protein XP_001386150.1 717141 D 322104 CDS PICST_1028 150866665 4840699 complement(join(<718579..718774,719060..719971,720008..721224,721381..>721659)) 1 NC_009047.1 2nd gene in HAL9 repeat unit, weak similarity to HAL9 factor involved in salt tolerance; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal Zn2Cys6 Cluster domain 721224 HAL9 4840699 HAL9 Pichia stipitis CBS 6054 Fungal Zn2Cys6 Cluster domain XP_001386333.2 <718579 R 322104 CDS PICST_15419 150866666 4840786 complement(join(<723959..725735,725790..725886,725911..726073,726095..>726199)) 1 NC_009047.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 726073 4840786 PICST_15419 Pichia stipitis CBS 6054 predicted protein XP_001386334.2 <723959 R 322104 CDS PICST_73563 150866517 4840787 727619..729967 1 NC_009047.1 predicted protein 729967 4840787 PICST_73563 Pichia stipitis CBS 6054 predicted protein XP_001386151.2 727619 D 322104 CDS PICST_49572 150866667 4840700 complement(730106..730741) 1 NC_009047.1 predicted protein 730741 4840700 PICST_49572 Pichia stipitis CBS 6054 predicted protein XP_001386335.2 730106 R 322104 CDS PICST_33473 126139259 4840788 731201..731848 1 NC_009047.1 predicted protein 731848 4840788 PICST_33473 Pichia stipitis CBS 6054 predicted protein XP_001386152.1 731201 D 322104 CDS PICST_63528 150866668 4840701 complement(732040..732195) 1 NC_009047.1 predicted protein 732195 4840701 PICST_63528 Pichia stipitis CBS 6054 predicted protein XP_001386336.2 732040 R 322104 CDS PICST_63274 150866669 4840789 complement(join(734130..734329,734354..735503)) 1 NC_009047.1 predicted protein 735503 4840789 PICST_63274 Pichia stipitis CBS 6054 predicted protein XP_001386337.2 734130 R 322104 CDS PICST_33476 150866518 4840790 join(735541..735565,735894..735895,736114..737679) 1 NC_009047.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein 737679 4840790 PICST_33476 Pichia stipitis CBS 6054 predicted protein XP_001386153.2 735541 D 322104 CDS PICST_33477 126139263 4840702 737974..739731 1 NC_009047.1 N-terminal part related to RNA:pseudouridine (psi)-synthases C-terminal portion contains the deaminase domain implicated in Riboflavin synthesis; go_function: zinc ion binding; hydrolase activity; RNA binding; pseudouridine synthase activity; go_process: RNA processing; DRAP deaminase 739731 RIB2 4840702 RIB2 Pichia stipitis CBS 6054 DRAP deaminase XP_001386154.1 737974 D 322104 CDS PICST_49923 150866670 4840703 complement(739954..741537) 1 NC_009047.1 predicted protein 741537 4840703 PICST_49923 Pichia stipitis CBS 6054 predicted protein XP_001386338.2 739954 R 322104 CDS PICST_85313 150866519 4840791 743189..745165 1 NC_009047.1 predicted protein 745165 4840791 PICST_85313 Pichia stipitis CBS 6054 predicted protein XP_001386155.2 743189 D 322104 CDS PICST_66087 150866671 4840704 complement(745959..748370) 1 NC_009047.1 go_function: dihydropteroate synthase activity; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity; dihydroneopterin aldolase activity; go_process: folic acid and derivative biosynthesis; folic acid and derivative metabolism; predicted protein 748370 4840704 PICST_66087 Pichia stipitis CBS 6054 predicted protein XP_001386339.2 745959 R 322104 CDS PICST_33482 150866672 4840792 complement(748776..750005) 1 NC_009047.1 predicted protein 750005 4840792 PICST_33482 Pichia stipitis CBS 6054 predicted protein XP_001386340.2 748776 R 322104 CDS PICST_66088 150866673 4840793 complement(join(750381..751243,751340..752321)) 1 NC_009047.1 predicted protein 752321 4840793 PICST_66088 Pichia stipitis CBS 6054 predicted protein XP_001386341.2 750381 R 322104 CDS PICST_79554 150866520 4840794 753110..753964 1 NC_009047.1 predicted protein 753964 4840794 PICST_79554 Pichia stipitis CBS 6054 predicted protein XP_001386156.2 753110 D 322104 CDS PICST_85013 150866674 4840705 complement(join(754202..755079,755092..755437)) 1 NC_009047.1 predicted protein 755437 4840705 PICST_85013 Pichia stipitis CBS 6054 predicted protein XP_001386342.2 754202 R 322104 CDS PICST_49400 150866521 4840795 756084..757109 1 NC_009047.1 predicted protein 757109 4840795 PICST_49400 Pichia stipitis CBS 6054 predicted protein XP_001386157.2 756084 D 322104 CDS PICST_91075 150866522 4840624 759307..761793 1 NC_009047.1 predicted protein 761793 4840624 PICST_91075 Pichia stipitis CBS 6054 predicted protein XP_001386158.2 759307 D 322104 CDS PICST_49344 126139273 4840625 <762835..764607 1 NC_009047.1 Electron transfer flavoprotein ubiquinone oxidoreductase; go_function: electron-transferring-flavoprotein dehydrogenase activity; go_process: electron transport; ETF-ubiquinone oxidoreductase 764607 ETF4 4840625 ETF4 Pichia stipitis CBS 6054 ETF-ubiquinone oxidoreductase XP_001386159.1 <762835 D 322104 CDS PICST_85432 150866675 4840626 complement(join(765325..765957,765997..766881)) 1 NC_009047.1 predicted protein 766881 4840626 PICST_85432 Pichia stipitis CBS 6054 predicted protein XP_001386343.2 765325 R 322104 CDS PICST_91178 150866676 4840796 complement(join(769596..770749,770846..771281)) 1 NC_009047.1 predicted protein 771281 4840796 PICST_91178 Pichia stipitis CBS 6054 predicted protein XP_001386344.2 769596 R 322104 CDS PICST_91093 150866677 4840797 complement(join(773831..773950,774011..775264)) 1 NC_009047.1 predicted protein 775264 4840797 PICST_91093 Pichia stipitis CBS 6054 predicted protein XP_001386345.2 773831 R 322104 CDS PICST_79547 150866523 4840798 778975..779868 1 NC_009047.1 predicted protein 779868 4840798 PICST_79547 Pichia stipitis CBS 6054 predicted protein XP_001386160.2 778975 D 322104 CDS PICST_33494 150866524 4840627 join(784032..784058,784158..784889) 1 NC_009047.1 Cytochrome c heme lyase (CCHL) (Holocytochrome-C synthase); go_component: mitochondrion; go_function: holocytochrome-c synthase activity; holocytochrome-c synthase 784889 CYC3 4840627 CYC3 Pichia stipitis CBS 6054 holocytochrome-c synthase XP_001386161.2 784032 D 322104 CDS PICST_33495 150866678 4840628 complement(785147..787372) 1 NC_009047.1 hypothetical protein 787372 4840628 PICST_33495 Pichia stipitis CBS 6054 hypothetical protein XP_001386346.2 785147 R 322104 CDS PICST_63651 150866525 4840799 788786..789469 1 NC_009047.1 predicted protein 789469 4840799 PICST_63651 Pichia stipitis CBS 6054 predicted protein XP_001386162.2 788786 D 322104 CDS PICST_63360 150866526 4840629 789857..791050 1 NC_009047.1 go_function: pseudouridylate synthase activity; go_process: RNA processing; predicted protein 791050 4840629 PICST_63360 Pichia stipitis CBS 6054 predicted protein XP_001386163.2 789857 D 322104 CDS PICST_49608 150866527 4840630 791341..792492 1 NC_009047.1 predicted protein 792492 4840630 PICST_49608 Pichia stipitis CBS 6054 predicted protein XP_001386164.2 791341 D 322104 CDS PICST_49619 150866528 4840631 792793..793314 1 NC_009047.1 predicted protein 793314 4840631 PICST_49619 Pichia stipitis CBS 6054 predicted protein XP_001386165.2 792793 D 322104 CDS PICST_73603 126139287 4840632 793703..795784 1 NC_009047.1 go_function: GTP binding; GTPase activity; predicted protein 795784 4840632 PICST_73603 Pichia stipitis CBS 6054 predicted protein XP_001386166.1 793703 D 322104 CDS PICST_85160 150866529 4840633 797373..798698 1 NC_009047.1 go_function: adenosylmethionine decarboxylase activity; go_process: spermine biosynthesis; spermidine biosynthesis; S-adenosylmethionine decarboxylase 798698 SPE2 4840633 SPE2 Pichia stipitis CBS 6054 S-adenosylmethionine decarboxylase XP_001386167.2 797373 D 322104 CDS PICST_85436 126139649 4840634 complement(799533..800435) 1 NC_009047.1 ADP,ATP carrier protein (ADP/ATP translocase) (Adenine nucleotide translocator) (ANT)(ADT2); go_component: membrane; go_function: binding; go_process: transport; ADP,ATP carrier protein 800435 ADT1 4840634 ADT1 Pichia stipitis CBS 6054 ADP,ATP carrier protein XP_001386347.1 799533 R 322104 CDS PICST_85147 150866679 4840800 complement(join(804347..809288,809463..809530)) 1 NC_009047.1 Drs2 Neo1 Family Adenosinetriphosphatase; phopholipid transporting ATPase 809530 DNF1 4840800 DNF1 Pichia stipitis CBS 6054 phopholipid transporting ATPase XP_001386348.2 804347 R 322104 CDS PICST_68363 150866680 4840801 complement(811467..811925) 1 NC_009047.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 811925 4840801 PICST_68363 Pichia stipitis CBS 6054 predicted protein XP_001386349.2 811467 R 322104 CDS PICST_49538 150866530 4840802 812444..812737 1 NC_009047.1 predicted protein 812737 4840802 PICST_49538 Pichia stipitis CBS 6054 predicted protein XP_001386168.2 812444 D 322104 CDS PICST_68364 126139293 4840635 join(818020..818168,818231..819614) 1 NC_009047.1 predicted protein 819614 4840635 PICST_68364 Pichia stipitis CBS 6054 predicted protein XP_001386169.1 818020 D 322104 CDS PICST_63283 150866681 4840636 complement(<821827..823758) 1 NC_009047.1 predicted protein 823758 4840636 PICST_63283 Pichia stipitis CBS 6054 predicted protein XP_001386350.2 <821827 R 322104 CDS PICST_33508 150866682 4840803 complement(824548..825924) 1 NC_009047.1 predicted protein 825924 4840803 PICST_33508 Pichia stipitis CBS 6054 predicted protein XP_001386351.2 824548 R 322104 CDS PICST_68367 150866531 4840535 join(833197..833500,833567..836157,836215..836523,836569..836862) 1 NC_009047.1 GTPase-activating protein for Rsr1p/Bud1p in S. cerevisiae; GTPase-activating protein 836862 BUD2 4840535 BUD2 Pichia stipitis CBS 6054 GTPase-activating protein XP_001386170.2 833197 D 322104 CDS PICST_33511 150866683 4840637 complement(837074..838024) 1 NC_009047.1 predicted protein 838024 4840637 PICST_33511 Pichia stipitis CBS 6054 predicted protein XP_001386352.2 837074 R 322104 CDS PICST_85298 150866532 4840536 840127..841029 1 NC_009047.1 predicted protein 841029 4840536 PICST_85298 Pichia stipitis CBS 6054 predicted protein XP_001386171.2 840127 D 322104 CDS PICST_63619 150866533 4840638 <842612..844060 1 NC_009047.1 go_component: cell wall; go_process: beta-1,6 glucan biosynthesis; cell wall organization and biogenesis; Beta-glucan synthesis-associated protein 844060 KRE6 4840638 KRE6 Pichia stipitis CBS 6054 Beta-glucan synthesis-associated protein XP_001386172.2 <842612 D 322104 CDS PICST_79365 150866534 4840639 join(844623..844676,844701..846542) 1 NC_009047.1 multicopper ferro-O2- oxidoreductase; go_function: copper ion binding; multicopper oxidase 846542 FET3 4840639 FET3 Pichia stipitis CBS 6054 multicopper oxidase XP_001386173.2 844623 D 322104 CDS PICST_33517 150866535 4840640 join(846915..846937,847077..848100) 1 NC_009047.1 go_function: oxidoreductase activity; go_process: electron transport; D-aspartate oxidase 848100 IFG3 4840640 IFG3 Pichia stipitis CBS 6054 D-aspartate oxidase XP_001386174.2 846915 D 322104 CDS PICST_63022 150866536 4840660 848416..849114 1 NC_009047.1 go_function: molecular function unknown; class E vacuolar-protein sorting and endocytosis factor 849114 DID4 4840660 DID4 Pichia stipitis CBS 6054 class E vacuolar-protein sorting and endocytosis factor XP_001386175.2 848416 D 322104 CDS PICST_49655 150866537 4840661 850011..852266 1 NC_009047.1 go_function: catalytic activity; go_process: metabolism; Long-chain-fatty-acid--CoA ligase 2 (Long-chain acyl-CoA synthetase 2) (Fatty acid activator 2) 852266 LACS1 4840661 LACS1 Pichia stipitis CBS 6054 Long-chain-fatty-acid--CoA ligase 2 (Long-chain acyl-CoA synthetase 2) (Fatty acid activator 2) XP_001386176.2 850011 D 322104 CDS PICST_90976 126139661 4840662 complement(852473..853072) 1 NC_009047.1 go_function: ATP binding; kinase activity; transferase activity, transferring phosphorus-containing groups; go_process: sulfate assimilation; Adenylyl-sulfate kinase (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) 853072 KAP1 4840662 KAP1 Pichia stipitis CBS 6054 Adenylyl-sulfate kinase (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) XP_001386353.1 852473 R 322104 CDS PICST_63765 150866538 4840537 853745..854110 1 NC_009047.1 mitochondrial ribosomal protein 854110 MRP17 4840537 MRP17 Pichia stipitis CBS 6054 mitochondrial ribosomal protein XP_001386177.2 853745 D 322104 CDS PICST_85046 150866539 4840663 join(855916..856090,856145..856763,856872..858483) 1 NC_009047.1 predicted protein 858483 4840663 PICST_85046 Pichia stipitis CBS 6054 predicted protein XP_001386178.2 855916 D 322104 CDS PICST_33523 150866540 4840664 859633..860166 1 NC_009047.1 predicted protein 860166 4840664 PICST_33523 Pichia stipitis CBS 6054 predicted protein XP_001386179.2 859633 D 322104 CDS PICST_63020 126139663 4840665 complement(860508..861605) 1 NC_009047.1 go_function: 2-dehydropantoate 2-reductase activity; go_process: pyrimidine base metabolism; predicted protein 861605 4840665 PICST_63020 Pichia stipitis CBS 6054 predicted protein XP_001386354.1 860508 R 322104 CDS PICST_33525 150866684 4840538 complement(862199..864136) 1 NC_009047.1 predicted protein 864136 4840538 PICST_33525 Pichia stipitis CBS 6054 predicted protein XP_001386355.2 862199 R 322104 CDS PICST_73864 126139667 4840539 complement(join(865637..866048,866380..866390,866594..866596)) 1 NC_009047.1 go_component: intracellular; go_function: actin binding; predicted protein 866596 4840539 PICST_73864 Pichia stipitis CBS 6054 predicted protein XP_001386356.1 865637 R 322104 CDS PICST_49395 150866541 4840540 868528..869910 1 NC_009047.1 Molecular chaperone (DnaJ superfamily); go_process: protein folding; DnaJ subfamily A member 869910 XDJ1 4840540 XDJ1 Pichia stipitis CBS 6054 DnaJ subfamily A member XP_001386180.2 868528 D 322104 CDS PICST_63748 126139669 4840666 complement(join(870072..870629,870672..870941)) 1 NC_009047.1 predicted protein 870941 4840666 PICST_63748 Pichia stipitis CBS 6054 predicted protein XP_001386357.1 870072 R 322104 CDS PICST_49353 150866542 4840541 871626..880874 1 NC_009047.1 predicted protein 880874 4840541 PICST_49353 Pichia stipitis CBS 6054 predicted protein XP_001386181.2 871626 D 322104 CDS PICST_23459 126139671 4840667 complement(<881149..>881331) 1 NC_009047.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein >881331 4840667 PICST_23459 Pichia stipitis CBS 6054 predicted protein XP_001386358.1 <881149 R 322104 CDS PICST_37052 150866543 4840542 881797..882381 1 NC_009047.1 predicted protein 882381 4840542 PICST_37052 Pichia stipitis CBS 6054 predicted protein XP_001386182.2 881797 D 322104 CDS PICST_33532 150866685 4840668 complement(887320..888429) 1 NC_009047.1 go_function: oxidoreductase activity; FAD binding; go_process: tRNA processing; dihydrouridine synthase 888429 DUS4 4840668 DUS4 Pichia stipitis CBS 6054 dihydrouridine synthase XP_001386359.2 887320 R 322104 CDS PICST_73625 150866686 4840543 complement(888934..890844) 1 NC_009047.1 predicted protein 890844 4840543 PICST_73625 Pichia stipitis CBS 6054 predicted protein XP_001386360.2 888934 R 322104 CDS PICST_79344 150866687 4840544 complement(<894477..894746) 1 NC_009047.1 predicted protein 894746 4840544 PICST_79344 Pichia stipitis CBS 6054 predicted protein XP_001386361.2 <894477 R 322104 CDS PICST_85073 150866544 4840545 join(896020..898561,898604..898708,898769..898857) 1 NC_009047.1 Reversal of tor2 lethality. Involved in Beta-1,6-glucan synthesis Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; glucosidase II 898857 ROT2 4840545 ROT2 Pichia stipitis CBS 6054 glucosidase II XP_001386183.2 896020 D 322104 CDS PICST_90954 150866688 4840669 complement(join(898914..899381,899451..899993)) 1 NC_009047.1 go_component: intracellular; go_function: nuclease activity; go_process: DNA repair; predicted protein 899993 4840669 PICST_90954 Pichia stipitis CBS 6054 predicted protein XP_001386362.2 898914 R 322104 CDS PICST_66106 150866545 4840546 join(902701..903440,903855..904380) 1 NC_009047.1 Sensory transduction histidine kinase; go_component: nucleus; go_function: two-component response regulator activity; DNA binding; transcription factor activity; go_process: two-component signal transduction system (phosphorelay); regulation of transcription, DNA-dependent; Protein with similarity to DNA-binding region of heat shock transcription factors 904380 SKN7 4840546 SKN7 Pichia stipitis CBS 6054 Protein with similarity to DNA-binding region of heat shock transcription factors XP_001386184.2 902701 D 322104 CDS PICST_49748 150866689 4840670 complement(904609..>905211) 1 NC_009047.1 predicted protein >905211 4840670 PICST_49748 Pichia stipitis CBS 6054 predicted protein XP_001386363.2 904609 R 322104 CDS PICST_66107 150866546 4840547 906397..907650 1 NC_009047.1 go_process: nucleoside metabolism; ribose-phosphate pyrophosphokinase 907650 PRS2 4840547 PRS2 Pichia stipitis CBS 6054 ribose-phosphate pyrophosphokinase XP_001386185.2 906397 D 322104 CDS PICST_85324 150866547 4840671 join(908939..909565,909581..>910066) 1 NC_009047.1 predicted protein 909565 4840671 PICST_85324 Pichia stipitis CBS 6054 predicted protein XP_001386186.2 908939 D 322104 CDS PICST_85125 150866690 4840672 complement(912978..919205) 1 NC_009047.1 go_component: fatty acid synthase complex; Fatty acid synthase subunit beta Includes: 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase; Enoyl-[acyl-carrier-protein] reductase [NADH]; [Acyl-carrier-protein] acetyltransferase; [Acyl-carrier-protein] malonyltransferase; S-acyl fatty acid synthase thioesterase 919205 FAS1 4840672 FAS1 Pichia stipitis CBS 6054 Fatty acid synthase subunit beta Includes: 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase; Enoyl-[acyl-carrier-protein] reductase [NADH]; [Acyl-carrier-protein] acetyltransferase; [Acyl-carrier-protein] malonyltransferase; S-acyl fatty acid synthase thioesterase XP_001386364.2 912978 R 322104 CDS PICST_79520 126139685 4840548 complement(920687..921664) 1 NC_009047.1 Nuclease 1, mitochondrial precursor (NUC1); go_function: nucleic acid binding; Mitochondrial nuclease 921664 PNU1 4840548 PNU1 Pichia stipitis CBS 6054 Mitochondrial nuclease XP_001386365.1 920687 R 322104 CDS PICST_63754 150866548 4840549 join(924063..924129,924154..925325) 1 NC_009047.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; predicted protein 925325 4840549 PICST_63754 Pichia stipitis CBS 6054 predicted protein XP_001386187.2 924063 D 322104 CDS PICST_33544 150866691 4840673 complement(925507..927063) 1 NC_009047.1 Glycosyl Phosphatidyl Inositol 17 GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis; Glycosyl Phosphatidyl Inositol 17 927063 GPI17 4840673 GPI17 Pichia stipitis CBS 6054 Glycosyl Phosphatidyl Inositol 17 XP_001386366.2 925507 R 322104 CDS PICST_49944 150866549 4840550 927376..929103 1 NC_009047.1 go_function: translation initiation factor activity; go_process: translational initiation; predicted protein 929103 4840550 PICST_49944 Pichia stipitis CBS 6054 predicted protein XP_001386188.2 927376 D 322104 CDS PICST_63653 150866692 4840674 complement(join(929333..930651,930709..930817,930926..931566,931708..>932245)) 1 NC_009047.1 F-box F-box domain; Leucine rich repeat protein, contains F-box 931566 FBX1 4840674 FBX1 Pichia stipitis CBS 6054 Leucine rich repeat protein, contains F-box XP_001386367.2 929333 R 322104 CDS PICST_33547 150866550 4840493 934449..935258 1 NC_009047.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 935258 4840493 PICST_33547 Pichia stipitis CBS 6054 predicted protein XP_001386189.2 934449 D 322104 CDS PICST_50092 150866551 4840597 935620..937599 1 NC_009047.1 predicted protein 937599 4840597 PICST_50092 Pichia stipitis CBS 6054 predicted protein XP_001386190.2 935620 D 322104 CDS PICST_63481 126139691 4840598 complement(937572..938657) 1 NC_009047.1 predicted protein 938657 4840598 PICST_63481 Pichia stipitis CBS 6054 predicted protein XP_001386368.1 937572 R 322104 CDS PICST_63700 150866552 4840494 939433..>940131 1 NC_009047.1 predicted protein >940131 4840494 PICST_63700 Pichia stipitis CBS 6054 predicted protein XP_001386191.2 939433 D 322104 CDS PICST_63174 126139339 4840599 940588..941532 1 NC_009047.1 go_component: cytoplasm; membrane; go_function: protein transporter activity; go_process: intracellular protein transport; predicted protein 941532 4840599 PICST_63174 Pichia stipitis CBS 6054 predicted protein XP_001386192.1 940588 D 322104 CDS PICST_19189 150866693 4840600 complement(join(<941845..942077,942093..>943029)) 1 NC_009047.1 go_function: GTP binding; go_process: cell cycle; predicted protein 942077 4840600 PICST_19189 Pichia stipitis CBS 6054 predicted protein XP_001386369.2 <941845 R 322104 CDS PICST_49396 150866553 4840495 943979..944725 1 NC_009047.1 predicted protein 944725 4840495 PICST_49396 Pichia stipitis CBS 6054 predicted protein XP_001386193.2 943979 D 322104 CDS PICST_85407 126139343 4840601 join(945120..945136,945553..945949) 1 NC_009047.1 go_component: membrane; go_process: intracellular signaling cascade; predicted protein 945949 4840601 PICST_85407 Pichia stipitis CBS 6054 predicted protein XP_001386194.1 945120 D 322104 CDS PICST_33555 150866694 4840602 complement(join(946233..947898,948225..948277)) 1 NC_009047.1 predicted protein 948277 4840602 PICST_33555 Pichia stipitis CBS 6054 predicted protein XP_001386370.2 946233 R 322104 CDS PICST_91009 126139697 4840496 complement(948871..949305) 1 NC_009047.1 go_component: ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 949305 4840496 PICST_91009 Pichia stipitis CBS 6054 predicted protein XP_001386371.1 948871 R 322104 CDS PICST_85246 150866695 4840497 complement(join(950127..950215,950261..952070)) 1 NC_009047.1 go_process: regulation of GTPase activity; predicted protein 952070 4840497 PICST_85246 Pichia stipitis CBS 6054 predicted protein XP_001386372.2 950127 R 322104 CDS PICST_63116 150866554 4840498 954762..955640 1 NC_009047.1 Protein involved in the expression of PAPS reductase and sulfite reductase. Also executes last 2 steps in the biosynthesis of sirohaem 955640 MET8 4840498 MET8 Pichia stipitis CBS 6054 Protein involved in the expression of PAPS reductase and sulfite reductase. Also executes last 2 steps in the biosynthesis of sirohaem XP_001386195.2 954762 D 322104 CDS PICST_90997 150866696 4840603 complement(955804..957135) 1 NC_009047.1 predicted protein 957135 4840603 PICST_90997 Pichia stipitis CBS 6054 predicted protein XP_001386373.2 955804 R 322104 CDS PICST_33560 126139347 4840499 958087..>958573 1 NC_009047.1 predicted protein >958573 4840499 PICST_33560 Pichia stipitis CBS 6054 predicted protein XP_001386196.1 958087 D 322104 CDS PICST_33561 150866555 4840604 958705..962094 1 NC_009047.1 membrane-spanning Ca-ATPase (P- type) 962094 DRS2 4840604 DRS2 Pichia stipitis CBS 6054 membrane-spanning Ca-ATPase (P- type) XP_001386197.2 958705 D 322104 CDS PICST_33562 150866556 4840605 join(962402..963343,963404..963979) 1 NC_009047.1 go_component: eukaryotic translation initiation factor 2B complex; go_function: translation initiation factor activity; GTP binding; go_process: translational initiation; predicted protein 963979 4840605 PICST_33562 Pichia stipitis CBS 6054 predicted protein XP_001386198.2 962402 D 322104 CDS PICST_73499 150866557 4840606 964332..969890 1 NC_009047.1 predicted protein 969890 4840606 PICST_73499 Pichia stipitis CBS 6054 predicted protein XP_001386199.2 964332 D 322104 CDS PICST_33564 150866697 4840607 complement(<970006..971231) 1 NC_009047.1 predicted protein 971231 4840607 PICST_33564 Pichia stipitis CBS 6054 predicted protein XP_001386374.2 <970006 R 322104 CDS PICST_73878 126139705 4840500 complement(972847..973764) 1 NC_009047.1 predicted protein 973764 4840500 PICST_73878 Pichia stipitis CBS 6054 predicted protein XP_001386375.1 972847 R 322104 CDS PICST_33566 150866698 4840551 complement(974745..975563) 1 NC_009047.1 predicted protein 975563 4840551 PICST_33566 Pichia stipitis CBS 6054 predicted protein XP_001386376.2 974745 R 322104 CDS PICST_63040 150866558 4840552 join(<978183..978352,978509..979803,979882..980021) 1 NC_009047.1 predicted protein 980021 4840552 PICST_63040 Pichia stipitis CBS 6054 predicted protein XP_001386200.2 <978183 D 322104 CDS PICST_33568 150866559 4840608 join(980471..980578,980615..981493,981551..981727) 1 NC_009047.1 predicted protein 981727 4840608 PICST_33568 Pichia stipitis CBS 6054 predicted protein XP_001386201.2 980471 D 322104 CDS PICST_85172 150866699 4840501 complement(join(981980..982206,982267..982402,982469..983350,983441..985120)) 1 NC_009047.1 predicted protein 985120 4840501 PICST_85172 Pichia stipitis CBS 6054 predicted protein XP_001386377.2 981980 R 322104 CDS PICST_14132 150866560 4840553 join(987596..989154,989221..989654,989907..989966,990081..991853,991938..>992392) 1 NC_009047.1 required for growth at alkaline pH and in high concentrations of lithium chloride; negative regulator of early meiotic expression 991853 MDS3 4840553 MDS3 Pichia stipitis CBS 6054 negative regulator of early meiotic expression XP_001386202.2 987596 D 322104 CDS PICST_63050 126139361 4840502 993816..994700 1 NC_009047.1 aldo/keto reductase [EC:1.1.1.2] [KO:K00002] galactose induced transcript; aldo/keto reductase 994700 GCY1 4840502 GCY1 Pichia stipitis CBS 6054 aldo/keto reductase XP_001386203.1 993816 D 322104 CDS PICST_33573 150866561 4840503 996148..997128 1 NC_009047.1 predicted protein 997128 4840503 PICST_33573 Pichia stipitis CBS 6054 predicted protein XP_001386204.2 996148 D 322104 CDS PICST_68393 150866700 4840504 complement(997233..998951) 1 NC_009047.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; hypothetical beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain 998951 4840504 PICST_68393 Pichia stipitis CBS 6054 hypothetical beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain XP_001386378.2 997233 R 322104 CDS PICST_79415 150866701 4840554 complement(<1007828..1009330) 1 NC_009047.1 similar to HYR5 of Candida albicans; hyphally regulated cell wall protein 1009330 HYR5.6 4840554 HYR5.6 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001386379.2 <1007828 R 322104 CDS PICST_63364 150866702 4840555 complement(join(1012996..1014155,1014222..>1014273)) 1 NC_009047.1 Mannan polymerase I complex VAN1 subunit (M-pol I subunit VAN1) (Vanadate resistance protein) 1014155 VAN1 4840555 VAN1 Pichia stipitis CBS 6054 Mannan polymerase I complex VAN1 subunit (M-pol I subunit VAN1) (Vanadate resistance protein) XP_001386380.2 1012996 R 322104 CDS PICST_91072 150866703 4840556 complement(1016690..1018579) 1 NC_009047.1 Phosphoglucomutase 2 (Glucose phosphomutase 2) (PGM 2); go_function: intramolecular transferase activity, phosphotransferases; go_process: carbohydrate metabolism; Phosphoglucomutase/phosphomannomutase 1018579 PGM3 4840556 PGM3 Pichia stipitis CBS 6054 Phosphoglucomutase/phosphomannomutase XP_001386381.2 1016690 R 322104 CDS PICST_85107 150866704 4840557 complement(1019112..1020656) 1 NC_009047.1 predicted protein 1020656 4840557 PICST_85107 Pichia stipitis CBS 6054 predicted protein XP_001386382.2 1019112 R 322104 CDS PICST_49689 150866705 4840558 complement(join(1021003..1021862,1021908..1022133)) 1 NC_009047.1 predicted protein 1022133 4840558 PICST_49689 Pichia stipitis CBS 6054 predicted protein XP_001386383.2 1021003 R 322104 CDS PICST_63097 150866706 4840559 complement(join(1023892..1023969,1023985..1026279)) 1 NC_009047.1 go_component: intracellular; predicted protein 1026279 4840559 PICST_63097 Pichia stipitis CBS 6054 predicted protein XP_001386384.2 1023892 R 322104 CDS PICST_50114 150866562 4840560 1027420..1028436 1 NC_009047.1 predicted protein 1028436 4840560 PICST_50114 Pichia stipitis CBS 6054 predicted protein XP_001386205.2 1027420 D 322104 CDS PICST_91105 126139725 4840505 complement(1028593..1029339) 1 NC_009047.1 go_function: triose-phosphate isomerase activity; go_process: metabolism; Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) 1029339 TPI1 4840505 TPI1 Pichia stipitis CBS 6054 Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) XP_001386385.1 1028593 R 322104 CDS PICST_85057 150866707 4840561 complement(1030081..1030911) 1 NC_009047.1 predicted protein 1030911 4840561 PICST_85057 Pichia stipitis CBS 6054 predicted protein XP_001386386.2 1030081 R 322104 CDS PICST_85399 126139729 4840562 complement(join(1032289..1033279,1033390..1033406)) 1 NC_009047.1 predicted protein 1033406 4840562 PICST_85399 Pichia stipitis CBS 6054 predicted protein XP_001386387.1 1032289 R 322104 CDS PICST_1946 150866563 4840563 join(<1034396..1034891,1035204..1036010,1036092..1036221,1036486..1036707,1036843..>1036966) 1 NC_009047.1 predicted protein 1036707 4840563 PICST_1946 Pichia stipitis CBS 6054 predicted protein XP_001386206.2 <1034396 D 322104 CDS PICST_68402 150866564 4840506 1037787..1042415 1 NC_009047.1 predicted protein 1042415 4840506 PICST_68402 Pichia stipitis CBS 6054 predicted protein XP_001386207.2 1037787 D 322104 CDS PICST_6407 150866708 4840507 complement(<1042951..>1043691) 1 NC_009047.1 predicted protein >1043691 4840507 PICST_6407 Pichia stipitis CBS 6054 predicted protein XP_001386388.2 <1042951 R 322104 CDS PICST_90882 150866709 4840564 complement(1045657..1048095) 1 NC_009047.1 Exocyst complex component SEC10 1048095 SEC10 4840564 SEC10 Pichia stipitis CBS 6054 Exocyst complex component SEC10 XP_001386389.2 1045657 R 322104 CDS PICST_73842 126139735 4840565 complement(1048666..1049121) 1 NC_009047.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; Ubiquitin/40S ribosomal protein S27a fusion 1049121 RSP27 4840565 RSP27 Pichia stipitis CBS 6054 Ubiquitin/40S ribosomal protein S27a fusion XP_001386390.1 1048666 R 322104 CDS PICST_37090 150866710 4840566 complement(1051062..1051733) 1 NC_009047.1 predicted protein 1051733 4840566 PICST_37090 Pichia stipitis CBS 6054 predicted protein XP_001386391.2 1051062 R 322104 CDS PICST_33591 150866711 4840567 complement(1052484..1053209) 1 NC_009047.1 predicted protein 1053209 4840567 PICST_33591 Pichia stipitis CBS 6054 predicted protein XP_001386392.2 1052484 R 322104 CDS PICST_63739 150866712 4840568 complement(1053868..1054512) 1 NC_009047.1 predicted protein 1054512 4840568 PICST_63739 Pichia stipitis CBS 6054 predicted protein XP_001386393.2 1053868 R 322104 CDS PICST_33593 150866713 4840756 complement(1055288..1058566) 1 NC_009047.1 hypothetical protein 1058566 4840756 PICST_33593 Pichia stipitis CBS 6054 hypothetical protein XP_001386394.2 1055288 R 322104 CDS PICST_33594 150866565 4840757 1059319..1060602 1 NC_009047.1 predicted protein 1060602 4840757 PICST_33594 Pichia stipitis CBS 6054 predicted protein XP_001386208.2 1059319 D 322104 CDS PICST_49223 150866566 4840508 1060895..1061905 1 NC_009047.1 NADPH-dependent cinnamyl-alcohol dehydrogenase; protein induced by osmotic stress 1061905 GRP3.4 4840508 GRP3.4 Pichia stipitis CBS 6054 protein induced by osmotic stress XP_001386209.2 1060895 D 322104 CDS PICST_49425 126139745 4840509 complement(1061986..1062570) 1 NC_009047.1 go_function: methylated-DNA-[protein]-cysteine S-methyltransferase activity; go_process: DNA repair; predicted protein 1062570 4840509 PICST_49425 Pichia stipitis CBS 6054 predicted protein XP_001386395.1 1061986 R 322104 CDS PICST_85023 150866714 4840758 complement(join(1062757..1062978,1062992..1063021,1063051..1063326)) 1 NC_009047.1 go_component: integral to membrane; go_function: copper ion transporter activity; go_process: copper ion transport; Copper Transporter integral membrane protein that functions in high affinity copper transport 1063326 CTR3 4840758 CTR3 Pichia stipitis CBS 6054 Copper Transporter integral membrane protein that functions in high affinity copper transport XP_001386396.2 1062757 R 322104 CDS PICST_33598 150866715 4840759 complement(join(1063648..1063686,1063796..1064374)) 1 NC_009047.1 predicted protein 1064374 4840759 PICST_33598 Pichia stipitis CBS 6054 predicted protein XP_001386397.2 1063648 R 322104 CDS PICST_33600 150866716 4840760 complement(1071670..1072743) 1 NC_009047.1 predicted protein 1072743 4840760 PICST_33600 Pichia stipitis CBS 6054 predicted protein XP_001386398.2 1071670 R 322104 CDS PICST_49723 150866567 4840761 1073390..1074184 1 NC_009047.1 go_function: transferase activity; go_process: metabolism; predicted protein 1074184 4840761 PICST_49723 Pichia stipitis CBS 6054 predicted protein XP_001386210.2 1073390 D 322104 CDS PICST_63000 150866568 4840510 join(<1074672..1075130,1075227..1076363) 1 NC_009047.1 go_process: electron transport; cytochrome P450 1076363 CYP559 4840510 CYP559 Pichia stipitis CBS 6054 cytochrome P450 XP_001386211.2 <1074672 D 322104 CDS PICST_63351 126139379 4840511 1077136..1078035 1 NC_009047.1 go_component: Golgi membrane; endoplasmic reticulum membrane; integral to membrane; go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; go_process: ceramide metabolism; predicted protein 1078035 4840511 PICST_63351 Pichia stipitis CBS 6054 predicted protein XP_001386212.1 1077136 D 322104 CDS PICST_68406 150866717 4840512 complement(1078116..1081115) 1 NC_009047.1 go_function: damaged DNA binding; ATP binding; DNA binding; go_process: mismatch repair; DNA repair; DNA metabolism; predicted protein 1081115 4840512 PICST_68406 Pichia stipitis CBS 6054 predicted protein XP_001386399.2 1078116 R 322104 CDS PICST_37097 126139755 4840762 complement(1081732..1082100) 1 NC_009047.1 predicted protein 1082100 4840762 PICST_37097 Pichia stipitis CBS 6054 predicted protein XP_001386400.1 1081732 R 322104 CDS PICST_20969 126139757 4840763 complement(join(<1083126..1083266,1083300..1083979,1083998..1084070)) 1 NC_009047.1 pH-regulated antigen precursor (PRA1)(58 kDa fibrinogen binding mannoprotein); pH-regulated antigen precursor 1084070 ANG1 4840763 ANG1 Pichia stipitis CBS 6054 pH-regulated antigen precursor XP_001386401.1 <1083126 R 322104 CDS PICST_63210 150866569 4840764 join(1084761..1084991,1085670..1086737) 1 NC_009047.1 go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; Zinc-regulated transporter 2 (Low-affinity zinc transport protein ZRT2) 1086737 ZRT2.3 4840764 ZRT2.3 Pichia stipitis CBS 6054 Zinc-regulated transporter 2 (Low-affinity zinc transport protein ZRT2) XP_001386213.2 1084761 D 322104 CDS PICST_63238 150866570 4840513 join(1087719..1088000,1088067..1089324,1089340..1089434) 1 NC_009047.1 Probable sucrose utilization protein SUC1 (MAL33); go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Probable sucrose utilization protein SUC1 1089434 SUC1.3 4840513 SUC1.3 Pichia stipitis CBS 6054 Probable sucrose utilization protein SUC1 XP_001386214.2 1087719 D 322104 CDS PICST_79384 150866571 4840514 1089974..1091590 1 NC_009047.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; G2-specific serine/threonine protein kinase 1091590 KIN3 4840514 KIN3 Pichia stipitis CBS 6054 G2-specific serine/threonine protein kinase XP_001386215.2 1089974 D 322104 CDS PICST_49451 126139759 4840515 complement(1091703..1092623) 1 NC_009047.1 go_function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity; go_process: purine nucleotide biosynthesis; Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase) 1092623 PUR7 4840515 PUR7 Pichia stipitis CBS 6054 Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase) XP_001386402.1 1091703 R 322104 CDS PICST_79414 150866572 4840765 1095262..>1096497 1 NC_009047.1 Exo-alpha-sialidase von Willebrand factor similar to hyphally regulated cell wall protein; von Willebrand factor (VWF2) >1096497 HYR6.5 4840765 HYR6.5 Pichia stipitis CBS 6054 von Willebrand factor (VWF2) XP_001386216.2 1095262 D 322104 CDS PICST_33612 150866718 4840579 complement(1106224..1112574) 1 NC_009047.1 Vesicle coat complex AP-3 1112574 VCC3.3 4840579 VCC3.3 Pichia stipitis CBS 6054 Vesicle coat complex AP-3 XP_001386403.2 1106224 R 322104 CDS PICST_33613 150866867 4841134 complement(2573..3934) 1 NC_009048.1 Monocarboxylate transporter 3934 MCH4.5 4841134 MCH4.5 Pichia stipitis CBS 6054 Monocarboxylate transporter XP_001386604.2 2573 R 322104 CDS PICST_33614 126140166 4841024 complement(4787..5098) 1 NC_009048.1 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH); go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity; go_process: glycolysis; Glyceraldehyde-3-phosphate dehydrogenase 5098 TDH4 4841024 TDH4 Pichia stipitis CBS 6054 Glyceraldehyde-3-phosphate dehydrogenase XP_001386605.1 4787 R 322104 CDS PICST_91284 150866719 4841025 10137..>11801 1 NC_009048.1 hypothetical protein >11801 4841025 PICST_91284 Pichia stipitis CBS 6054 hypothetical protein XP_001386404.2 10137 D 322104 CDS PICST_64361 150866720 4840828 join(14841..15084,15199..17099) 1 NC_009048.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 17099 4840828 PICST_64361 Pichia stipitis CBS 6054 predicted protein XP_001386405.2 14841 D 322104 CDS PICST_50606 150866868 4840829 complement(17184..>18602) 1 NC_009048.1 MSF transporter; hypothetical protein >18602 SGE1.2 4840829 SGE1.2 Pichia stipitis CBS 6054 hypothetical protein XP_001386606.2 17184 R 322104 CDS PICST_91537 150866869 4841026 complement(<20878..21816) 1 NC_009048.1 go_function: hydrolase activity; go_process: metabolism; chitinase 21816 CHT1 4841026 CHT1 Pichia stipitis CBS 6054 chitinase XP_001386607.2 <20878 R 322104 CDS PICST_33619 150866870 4841027 complement(23338..24048) 1 NC_009048.1 hypothetical protein 24048 4841027 PICST_33619 Pichia stipitis CBS 6054 hypothetical protein XP_001386608.2 23338 R 322104 CDS PICST_37102 150866721 4841028 join(25482..25523,26442..26615,26682..28076) 1 NC_009048.1 predicted protein 28076 4841028 PICST_37102 Pichia stipitis CBS 6054 predicted protein XP_001386406.2 25482 D 322104 CDS PICST_33621 150866871 4840830 complement(28359..30224) 1 NC_009048.1 predicted protein 30224 4840830 PICST_33621 Pichia stipitis CBS 6054 predicted protein XP_001386609.2 28359 R 322104 CDS PICST_33622 126140176 4841029 complement(30461..30760) 1 NC_009048.1 predicted protein 30760 4841029 PICST_33622 Pichia stipitis CBS 6054 predicted protein XP_001386610.1 30461 R 322104 CDS PICST_50850 150866872 4841030 complement(join(<31425..31888,31970..32300)) 1 NC_009048.1 go_function: RNA binding; pseudouridine synthase activity; go_process: RNA processing; pseudouridylate synthase 32300 PUS5 4841030 PUS5 Pichia stipitis CBS 6054 pseudouridylate synthase XP_001386611.2 <31425 R 322104 CDS PICST_64253 150866722 4841031 join(<32653..33393,33409..33825) 1 NC_009048.1 predicted protein 33825 4841031 PICST_64253 Pichia stipitis CBS 6054 predicted protein XP_001386407.2 <32653 D 322104 CDS PICST_50785 126139772 4840841 join(34419..34751,34887..34991) 1 NC_009048.1 predicted protein 34991 4840841 PICST_50785 Pichia stipitis CBS 6054 predicted protein XP_001386408.1 34419 D 322104 CDS PICST_79854 126139774 4840842 36237..37478 1 NC_009048.1 3-ketoacyl-CoA thiolase B, peroxisomal precursor (Beta-ketothiolase B) (Acetyl-CoA acyltransferase B) (Peroxisomal 3-oxoacyl-CoA thiolase B) (Thiolase IB); peroxysomal 3-ketoacyl-CoA thiolase A (THIL) 37478 POT11 4840842 POT11 Pichia stipitis CBS 6054 peroxysomal 3-ketoacyl-CoA thiolase A (THIL) XP_001386409.1 36237 D 322104 CDS PICST_50446 126139776 4840843 45749..46963 1 NC_009048.1 go_function: transaminase activity; go_process: biosynthesis; Aspartate aminotransferase (Transaminase A) (AspAT) 46963 AAT3 4840843 AAT3 Pichia stipitis CBS 6054 Aspartate aminotransferase (Transaminase A) (AspAT) XP_001386410.1 45749 D 322104 CDS PICST_18249 150866723 4840844 join(<48984..50315,50424..>50642) 1 NC_009048.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 50315 4840844 PICST_18249 Pichia stipitis CBS 6054 predicted protein XP_001386411.2 <48984 D 322104 CDS PICST_68415 150866873 4840823 complement(join(50952..51256,51620..52625,52665..53093,53117..53121,53147..54026)) 1 NC_009048.1 predicted protein 54026 4840823 PICST_68415 Pichia stipitis CBS 6054 predicted protein XP_001386612.2 50952 R 322104 CDS PICST_64630 150866724 4841032 join(55846..57996,58060..>58278) 1 NC_009048.1 predicted protein 57996 4841032 PICST_64630 Pichia stipitis CBS 6054 predicted protein XP_001386412.2 55846 D 322104 CDS PICST_80013 150866874 4840824 complement(60788..63775) 1 NC_009048.1 go_function: catalytic activity; formate-tetrahydrofolate ligase activity; ATP binding; go_process: folic acid and derivative biosynthesis; mitochondrial C1- tetrahydrofolate synthase precursor 63775 MIS1 4840824 MIS1 Pichia stipitis CBS 6054 mitochondrial C1- tetrahydrofolate synthase precursor XP_001386613.2 60788 R 322104 CDS PICST_85469 150866875 4841033 complement(join(65176..67205,67290..67811,67872..69901,69950..70390,70460..70483,70514..70645,70787..70968)) 1 NC_009048.1 go_function: actin binding; predicted protein 70968 4841033 PICST_85469 Pichia stipitis CBS 6054 predicted protein XP_001386614.2 65176 R 322104 CDS PICST_14301 150866725 4841034 join(<74562..75176,75216..75350,75390..75995,76038..77292,77338..77983,78023..>79319) 1 NC_009048.1 predicted protein 77983 4841034 PICST_14301 Pichia stipitis CBS 6054 predicted protein XP_001386413.2 <74562 D 322104 CDS PICST_37112 150866876 4840825 complement(79428..80660) 1 NC_009048.1 go_function: phosphatase activator activity; predicted protein 80660 4840825 PICST_37112 Pichia stipitis CBS 6054 predicted protein XP_001386615.2 79428 R 322104 CDS PICST_33639 150866877 4841035 complement(80839..83523) 1 NC_009048.1 go_function: nuclease activity; go_process: DNA repair; predicted protein 83523 4841035 PICST_33639 Pichia stipitis CBS 6054 predicted protein XP_001386616.2 80839 R 322104 CDS PICST_51012 150866726 4841036 84252..86978 1 NC_009048.1 ATP-dependent 3'-5' DNA helicase SRS2 Required for proper timing of committment to meiotic recombination and the transition from Meiosis I to Meiosis II; go_function: DNA binding; ATP-dependent DNA helicase activity; ATP binding; go_process: DNA repair; protein required for proper timing of committment to meiotic recombination and the transition from Meiosis I to Meiosis II 86978 HPR5 4841036 HPR5 Pichia stipitis CBS 6054 protein required for proper timing of committment to meiotic recombination and the transition from Meiosis I to Meiosis II XP_001386414.2 84252 D 322104 CDS PICST_64726 126140190 4840826 complement(87800..88408) 1 NC_009048.1 go_component: cytoplasm; go_function: Rho GDP-dissociation inhibitor activity; predicted protein 88408 4840826 PICST_64726 Pichia stipitis CBS 6054 predicted protein XP_001386617.1 87800 R 322104 CDS PICST_68421 150866878 4841037 complement(89466..90929) 1 NC_009048.1 predicted protein 90929 4841037 PICST_68421 Pichia stipitis CBS 6054 predicted protein XP_001386618.2 89466 R 322104 CDS PICST_64503 150866727 4841038 join(91497..91514,91890..95012) 1 NC_009048.1 predicted protein 95012 4841038 PICST_64503 Pichia stipitis CBS 6054 predicted protein XP_001386415.2 91497 D 322104 CDS PICST_85685 126140194 4840827 complement(join(95339..95698,96133..96135)) 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 96135 4840827 PICST_85685 Pichia stipitis CBS 6054 predicted protein XP_001386619.1 95339 R 322104 CDS PICST_79956 126140196 4841039 complement(97034..97579) 1 NC_009048.1 go_function: GTP binding; predicted protein 97579 4841039 PICST_79956 Pichia stipitis CBS 6054 predicted protein XP_001386620.1 97034 R 322104 CDS PICST_63927 150866879 4841040 complement(join(98778..99746,99864..>99959)) 1 NC_009048.1 predicted protein 99746 4841040 PICST_63927 Pichia stipitis CBS 6054 predicted protein XP_001386621.2 98778 R 322104 CDS PICST_85501 150866728 4841041 join(102495..104531,104661..104867) 1 NC_009048.1 High-affinity glucose transporter similar to Candida intermedia GXS1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; High-affinity glucose transporter 104867 SNF3 4841041 SNF3 Pichia stipitis CBS 6054 High-affinity glucose transporter XP_001386416.2 102495 D 322104 CDS PICST_85740 150866729 4840831 109474..109986 1 NC_009048.1 predicted protein 109986 4840831 PICST_85740 Pichia stipitis CBS 6054 predicted protein XP_001386417.2 109474 D 322104 CDS PICST_91530 150866880 4840832 complement(111037..113508) 1 NC_009048.1 Probable nucleolar complex protein 14 113508 NOP14 4840832 NOP14 Pichia stipitis CBS 6054 Probable nucleolar complex protein 14 XP_001386622.2 111037 R 322104 CDS PICST_64286 150866881 4841042 complement(join(113854..114107,114183..116337,116386..116488,116630..>116805)) 1 NC_009048.1 predicted protein 116488 4841042 PICST_64286 Pichia stipitis CBS 6054 predicted protein XP_001386623.2 113854 R 322104 CDS PICST_33652 150866730 4841043 119342..119743 1 NC_009048.1 predicted protein 119743 4841043 PICST_33652 Pichia stipitis CBS 6054 predicted protein XP_001386418.2 119342 D 322104 CDS PICST_50873 150866731 4840833 join(<120725..121058,121182..121288) 1 NC_009048.1 C2H2 zinc finger transcription factor; Saccharomyces cerevisiae, Controls the expression of ADH2, peroxisomal protein genes, and genes required for ethanol, glycerol, and fatty acid utilization in that organism; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; ADR1-like protein 121288 ADR1.3 4840833 ADR1.3 Pichia stipitis CBS 6054 ADR1-like protein XP_001386419.2 <120725 D 322104 CDS PICST_33654 150866732 4840834 121960..123399 1 NC_009048.1 predicted protein 123399 4840834 PICST_33654 Pichia stipitis CBS 6054 predicted protein XP_001386420.2 121960 D 322104 CDS PICST_64208 150866733 4840835 123570..124889 1 NC_009048.1 go_function: catalytic activity; go_process: fatty acid biosynthesis; 3-oxoacyl-[acyl-carrier-protein]- synthase 124889 CEM1 4840835 CEM1 Pichia stipitis CBS 6054 3-oxoacyl-[acyl-carrier-protein]- synthase XP_001386421.2 123570 D 322104 CDS PICST_33656 150866734 4840836 125821..126999 1 NC_009048.1 Quinone oxidoreductase (NADPH:quinone reductase) (Yong-Su Jin[2006-01-06 11:37:55]); go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; Quinone oxidoreductase (NADPH:quinone reductase) 126999 QOR2 4840836 QOR2 Pichia stipitis CBS 6054 Quinone oxidoreductase (NADPH:quinone reductase) XP_001386422.2 125821 D 322104 CDS PICST_85565 150866882 4840837 complement(join(127427..128371,128708..130210)) 1 NC_009048.1 Yeast Nucleoside Diphosphatase Golgi apyrase (ATP-diphosphatase) (Adenosine diphosphatase) (ADPase) (ATP-diphosphohydrolase) (Golgi nucleoside diphosphatase); go_function: hydrolase activity; Yeast Nucleoside Diphosphatase 130210 YND2 4840837 YND2 Pichia stipitis CBS 6054 Yeast Nucleoside Diphosphatase XP_001386624.2 127427 R 322104 CDS PICST_63918 150866735 4841044 join(<132167..132329,132363..133336) 1 NC_009048.1 go_function: caspase activity; go_process: proteolysis and peptidolysis; predicted protein 133336 4841044 PICST_63918 Pichia stipitis CBS 6054 predicted protein XP_001386423.2 <132167 D 322104 CDS PICST_64341 150866883 4840838 complement(133600..134148) 1 NC_009048.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein of the ras family 134148 RHB1 4840838 RHB1 Pichia stipitis CBS 6054 GTP-binding protein of the ras family XP_001386625.2 133600 R 322104 CDS PICST_68429 150866884 4841045 complement(136560..137816) 1 NC_009048.1 Probable transcriptional regulatory protein; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; fungal transcriptional regulatory protein 137816 FST13 4841045 FST13 Pichia stipitis CBS 6054 fungal transcriptional regulatory protein XP_001386626.2 136560 R 322104 CDS PICST_80003 150866736 4841046 143811..146606 1 NC_009048.1 go_function: nucleic acid binding; helicase activity; ATP binding; predicted protein 146606 4841046 PICST_80003 Pichia stipitis CBS 6054 predicted protein XP_001386424.2 143811 D 322104 CDS PICST_68431 150866885 4840839 complement(join(146883..148284,148501..148544)) 1 NC_009048.1 predicted protein 148544 4840839 PICST_68431 Pichia stipitis CBS 6054 predicted protein XP_001386627.2 146883 R 322104 CDS PICST_50882 126139806 4841047 149946..151259 1 NC_009048.1 go_function: molecular function unknown; predicted protein 151259 4841047 PICST_50882 Pichia stipitis CBS 6054 predicted protein XP_001386425.1 149946 D 322104 CDS PICST_50942 126139808 4840840 151770..152825 1 NC_009048.1 go_process: thiamin biosynthesis; predicted protein 152825 4840840 PICST_50942 Pichia stipitis CBS 6054 predicted protein XP_001386426.1 151770 D 322104 CDS PICST_64207 126139810 4840974 153506..153961 1 NC_009048.1 go_component: prefoldin complex; go_process: protein folding; predicted protein 153961 4840974 PICST_64207 Pichia stipitis CBS 6054 predicted protein XP_001386427.1 153506 D 322104 CDS PICST_85551 150866886 4840975 complement(join(154158..154280,154305..155195)) 1 NC_009048.1 predicted protein 155195 4840975 PICST_85551 Pichia stipitis CBS 6054 predicted protein XP_001386628.2 154158 R 322104 CDS PICST_85665 126139812 4841048 join(155862..155973,156507..156955) 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 156955 4841048 PICST_85665 Pichia stipitis CBS 6054 predicted protein XP_001386428.1 155862 D 322104 CDS PICST_68434 150866737 4840976 157696..159651 1 NC_009048.1 predicted protein 159651 4840976 PICST_68434 Pichia stipitis CBS 6054 predicted protein XP_001386429.2 157696 D 322104 CDS PICST_85487 126139816 4840977 join(160062..160081,160528..160942) 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 160942 4840977 PICST_85487 Pichia stipitis CBS 6054 predicted protein XP_001386430.1 160062 D 322104 CDS PICST_68436 150866887 4840978 complement(161197..173892) 1 NC_009048.1 go_component: dynein complex; go_function: microtubule motor activity; go_process: microtubule-based movement; Dynein heavy chain, cytosolic (DYHC) 173892 DYHC 4840978 DYHC Pichia stipitis CBS 6054 Dynein heavy chain, cytosolic (DYHC) XP_001386629.2 161197 R 322104 CDS PICST_85570 150866738 4841049 join(176858..177038,177060..181396) 1 NC_009048.1 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily; go_component: membrane; go_function: ATP binding; go_process: transport; Multidrug resistance protein 181396 CDR1 4841049 CDR1 Pichia stipitis CBS 6054 Multidrug resistance protein XP_001386431.2 176858 D 322104 CDS PICST_64368 126139820 4840979 182308..183279 1 NC_009048.1 Coproporphyrinogen III oxidase (Coproporphyrinogenase) (Coprogen oxidase) (COX); sixth step in heme biosynthetic pathway; go_function: coproporphyrinogen oxidase activity; go_process: porphyrin biosynthesis; Oxygen-repressed protein 183279 HEM13 4840979 HEM13 Pichia stipitis CBS 6054 Oxygen-repressed protein XP_001386432.1 182308 D 322104 CDS PICST_33673 150866888 4840980 complement(183448..185196) 1 NC_009048.1 predicted protein 185196 4840980 PICST_33673 Pichia stipitis CBS 6054 predicted protein XP_001386630.2 183448 R 322104 CDS PICST_50672 150866739 4841050 185792..187081 1 NC_009048.1 hypothetical protein ; unknown function; go_function: catalytic activity; go_process: metabolism; hypothetical protein unknown function 187081 4841050 PICST_50672 Pichia stipitis CBS 6054 hypothetical protein unknown function XP_001386433.2 185792 D 322104 CDS PICST_50944 150866740 4840981 187502..188278 1 NC_009048.1 Glucose 1-dehydrogenase II (GLCDH-II) (bacterial); go_function: oxidoreductase activity; go_process: metabolism; Glucose 1-dehydrogenase II (GLCDH-II) 188278 DHG2 4840981 DHG2 Pichia stipitis CBS 6054 Glucose 1-dehydrogenase II (GLCDH-II) XP_001386434.2 187502 D 322104 CDS PICST_63908 150866889 4840982 complement(188288..189298) 1 NC_009048.1 predicted protein 189298 4840982 PICST_63908 Pichia stipitis CBS 6054 predicted protein XP_001386631.2 188288 R 322104 CDS PICST_64442 126140220 4841051 complement(189491..190423) 1 NC_009048.1 predicted protein 190423 4841051 PICST_64442 Pichia stipitis CBS 6054 predicted protein XP_001386632.1 189491 R 322104 CDS PICST_33678 150866890 4841052 complement(join(192966..194581,194744..195149)) 1 NC_009048.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; predicted protein 195149 4841052 PICST_33678 Pichia stipitis CBS 6054 predicted protein XP_001386633.2 192966 R 322104 CDS PICST_64239 150866741 4841053 join(196860..196920,196936..199028) 1 NC_009048.1 predicted protein 199028 4841053 PICST_64239 Pichia stipitis CBS 6054 predicted protein XP_001386435.2 196860 D 322104 CDS PICST_50166 150866742 4840983 199301..201022 1 NC_009048.1 KRRI-Interacting protein 1 201022 KRI1 4840983 KRI1 Pichia stipitis CBS 6054 KRRI-Interacting protein 1 XP_001386436.2 199301 D 322104 CDS PICST_37138 126140224 4840984 complement(201208..202905) 1 NC_009048.1 Arylsulfatase (AS) (Aryl-sulfate sulphohydrolase) (bacterial); go_function: sulfuric ester hydrolase activity; go_process: metabolism; Arylsulfatase (AS) (Aryl-sulfate sulphohydrolase) 202905 ARS1 4840984 ARS1 Pichia stipitis CBS 6054 Arylsulfatase (AS) (Aryl-sulfate sulphohydrolase) XP_001386634.1 201208 R 322104 CDS PICST_85758 150866891 4841054 complement(join(203345..204847,204908..205377,205410..205444,205467..205939)) 1 NC_009048.1 go_component: membrane; go_function: metal ion transporter activity; go_process: metal ion transport; aluminum resistance putative divalent cation transporter 205939 ALR1 4841054 ALR1 Pichia stipitis CBS 6054 aluminum resistance putative divalent cation transporter XP_001386635.2 203345 R 322104 CDS PICST_91380 150866743 4841089 208026..210527 1 NC_009048.1 predicted protein 210527 4841089 PICST_91380 Pichia stipitis CBS 6054 predicted protein XP_001386437.2 208026 D 322104 CDS PICST_64707 150866744 4840985 join(210840..210881,211017..211748,211788..211919) 1 NC_009048.1 associated with histones/Spt16/Pob3 211919 PSH1 4840985 PSH1 Pichia stipitis CBS 6054 associated with histones/Spt16/Pob3 XP_001386438.2 210840 D 322104 CDS PICST_85465 126139834 4840986 212790..212969 1 NC_009048.1 Cytochrome c oxidase polypeptide VII 212969 COX7 4840986 COX7 Pichia stipitis CBS 6054 Cytochrome c oxidase polypeptide VII XP_001386439.1 212790 D 322104 CDS PICST_33685 150866892 4840987 complement(213361..215370) 1 NC_009048.1 predicted protein 215370 4840987 PICST_33685 Pichia stipitis CBS 6054 predicted protein XP_001386636.2 213361 R 322104 CDS PICST_37142 150866745 4841090 217096..218370 1 NC_009048.1 go_process: electron transport; Cytochrome P450 52A3 (CYPLIIA3) (Alkane-inducible P450-ALK1-A) (P450-CM1) (CYP52A3-A) (Cytochrome P-450ALK) 218370 CYP52 4841090 CYP52 Pichia stipitis CBS 6054 Cytochrome P450 52A3 (CYPLIIA3) (Alkane-inducible P450-ALK1-A) (P450-CM1) (CYP52A3-A) (Cytochrome P-450ALK) XP_001386440.2 217096 D 322104 CDS PICST_74268 150866746 4840988 219712..221922 1 NC_009048.1 beta-adaptin, large subunit of the clathrin-associated protein (AP-1) complex 221922 APL2 4840988 APL2 Pichia stipitis CBS 6054 beta-adaptin, large subunit of the clathrin-associated protein (AP-1) complex XP_001386441.2 219712 D 322104 CDS PICST_66143 150866893 4840876 complement(222101..222874) 1 NC_009048.1 go_component: nucleus; go_function: transcription coactivator activity; go_process: positive regulation of transcription; predicted protein 222874 4840876 PICST_66143 Pichia stipitis CBS 6054 predicted protein XP_001386637.2 222101 R 322104 CDS PICST_37145 126139840 4841091 join(223244..223364,223502..223722) 1 NC_009048.1 Skp1 Cullin-F-box ubiquitin protein ligase (SCF) subunit 223722 HRT1 4841091 HRT1 Pichia stipitis CBS 6054 Skp1 Cullin-F-box ubiquitin protein ligase (SCF) subunit XP_001386442.1 223244 D 322104 CDS PICST_33690 150866894 4840877 complement(join(224035..224690,224769..224982,225087..225137)) 1 NC_009048.1 Prephenate dehydratase (PDT) (BACTERIAL); go_function: prephenate dehydratase activity; amino acid binding; go_process: L-phenylalanine biosynthesis; metabolism; Prephenate dehydratase (PDT) 225137 PHA2 4840877 PHA2 Pichia stipitis CBS 6054 Prephenate dehydratase (PDT) XP_001386638.2 224035 R 322104 CDS PICST_85470 126140234 4841092 complement(225756..226331) 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 226331 4841092 PICST_85470 Pichia stipitis CBS 6054 predicted protein XP_001386639.1 225756 R 322104 CDS PICST_85478 126140236 4841093 complement(227192..228268) 1 NC_009048.1 go_function: peroxidase activity; go_process: response to oxidative stress; predicted protein 228268 4841093 PICST_85478 Pichia stipitis CBS 6054 predicted protein XP_001386640.1 227192 R 322104 CDS PICST_85702 150866895 4841094 complement(join(230161..233465,233481..233760,233890..234084)) 1 NC_009048.1 Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex protein STH1) (SNF2 homolog) helicase subunit of the RSC complex; go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex protein STH1) (SNF2 homolog) 234084 STH1 4841094 STH1 Pichia stipitis CBS 6054 Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex protein STH1) (SNF2 homolog) XP_001386641.2 230161 R 322104 CDS PICST_50505 126139842 4841095 235719..236279 1 NC_009048.1 predicted protein 236279 4841095 PICST_50505 Pichia stipitis CBS 6054 predicted protein XP_001386443.1 235719 D 322104 CDS PICST_79721 150866747 4840878 238170..241217 1 NC_009048.1 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor (Alpha-ketoglutarate dehydrogenase); go_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor; go_process: metabolism; alpha-ketoglutarate dehydrogenase 241217 KGD1 4840878 KGD1 Pichia stipitis CBS 6054 alpha-ketoglutarate dehydrogenase XP_001386444.2 238170 D 322104 CDS PICST_50409 150866748 4840879 241978..243321 1 NC_009048.1 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases; go_function: monooxygenase activity; go_process: aromatic compound metabolism; Salicylate hydroxylase (Salicylate 1-monooxygenase) 243321 NHG2 4840879 NHG2 Pichia stipitis CBS 6054 Salicylate hydroxylase (Salicylate 1-monooxygenase) XP_001386445.2 241978 D 322104 CDS PICST_64256 150866896 4840880 complement(join(243378..243632,243780..244012,244046..>244682)) 1 NC_009048.1 go_function: oxidoreductase activity; go_process: electron transport; metabolism; probable oxidoreductase 244012 4840880 PICST_64256 Pichia stipitis CBS 6054 probable oxidoreductase XP_001386642.2 243378 R 322104 CDS PICST_33699 150866897 4841096 complement(245795..248014) 1 NC_009048.1 predicted protein 248014 4841096 PICST_33699 Pichia stipitis CBS 6054 predicted protein XP_001386643.2 245795 R 322104 CDS PICST_64420 150866749 4841097 248922..251363 1 NC_009048.1 go_component: cytoplasm; go_function: shikimate 5-dehydrogenase activity; go_process: aromatic amino acid family biosynthesis, shikimate pathway; predicted protein 251363 4841097 PICST_64420 Pichia stipitis CBS 6054 predicted protein XP_001386446.2 248922 D 322104 CDS PICST_85576 150866898 4840881 complement(251402..252295) 1 NC_009048.1 go_function: oxidoreductase activity; go_process: metabolism; 1-acyl dihydroxyacetone phosphate reductase 252295 AYR2 4840881 AYR2 Pichia stipitis CBS 6054 1-acyl dihydroxyacetone phosphate reductase XP_001386644.2 251402 R 322104 CDS PICST_64696 150866899 4841098 complement(join(252719..253028,253057..253092,253179..253312)) 1 NC_009048.1 predicted protein 253312 4841098 PICST_64696 Pichia stipitis CBS 6054 predicted protein XP_001386645.2 252719 R 322104 CDS PICST_33703 150866750 4841099 253532..256369 1 NC_009048.1 Mucin-like protein contains chitinase-like features possibly involved in adhesion; present in four nearly identical copies; Gastrin mucin-like protein 256369 MUC1.7 4841099 MUC1.7 Pichia stipitis CBS 6054 Gastrin mucin-like protein XP_001386447.2 253532 D 322104 CDS PICST_68450 150866751 4840882 260175..260843 1 NC_009048.1 highly conserved, repeated sequence similar to MUC1; repeated sequence with similarity to MUC1 260843 MUC1.10 4840882 MUC1.10 Pichia stipitis CBS 6054 repeated sequence with similarity to MUC1 XP_001386448.2 260175 D 322104 CDS PICST_33707 150866752 4840883 264359..265183 1 NC_009048.1 go_component: membrane; go_function: molecular function unknown; predicted protein 265183 4840883 PICST_33707 Pichia stipitis CBS 6054 predicted protein XP_001386449.2 264359 D 322104 CDS PICST_50192 150866753 4840884 <265747..266820 1 NC_009048.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 266820 4840884 PICST_50192 Pichia stipitis CBS 6054 predicted protein XP_001386450.2 <265747 D 322104 CDS PICST_37156 126140248 4840885 complement(266846..267754) 1 NC_009048.1 predicted protein 267754 4840885 PICST_37156 Pichia stipitis CBS 6054 predicted protein XP_001386646.1 266846 R 322104 CDS PICST_64487 126139858 4841100 269579..270904 1 NC_009048.1 go_function: 1-phosphatidylinositol-4-phosphate 5-kinase activity; Phosphatidylinositol-4-phosphate 5-kinase 270904 MSS4 4841100 MSS4 Pichia stipitis CBS 6054 Phosphatidylinositol-4-phosphate 5-kinase XP_001386451.1 269579 D 322104 CDS PICST_85561 126139860 4840886 271506..272774 1 NC_009048.1 predicted protein 272774 4840886 PICST_85561 Pichia stipitis CBS 6054 predicted protein XP_001386452.1 271506 D 322104 CDS PICST_50366 126139862 4840887 272997..>273965 1 NC_009048.1 go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; go_process: nitrogen compound metabolism; Aliphatic nitrilase >273965 NRL2 4840887 NRL2 Pichia stipitis CBS 6054 Aliphatic nitrilase XP_001386453.1 272997 D 322104 CDS PICST_50504 150866900 4840888 complement(274077..275393) 1 NC_009048.1 predicted protein 275393 4840888 PICST_50504 Pichia stipitis CBS 6054 predicted protein XP_001386647.2 274077 R 322104 CDS PICST_74252 150866754 4841101 275617..283140 1 NC_009048.1 go_component: integral to membrane; go_process: processing of 20S pre-rRNA; U3 snoRNP protein 283140 UTP20 4841101 UTP20 Pichia stipitis CBS 6054 U3 snoRNP protein XP_001386454.2 275617 D 322104 CDS PICST_12709 126140252 4840889 complement(<283453..>284106) 1 NC_009048.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; non-histone protein 10 >284106 NHP10 4840889 NHP10 Pichia stipitis CBS 6054 non-histone protein 10 XP_001386648.1 <283453 R 322104 CDS PICST_91563 150866901 4841102 complement(join(287236..287267,287338..288079,288188..290536)) 1 NC_009048.1 Transposon 5.3 integrase, catalytic region (Tps5.3); go_function: DNA binding; go_process: DNA recombination; RNA-directed DNA polymerase Tps5.3 polyprotein 290536 POL5.3 4841102 POL5.3 Pichia stipitis CBS 6054 RNA-directed DNA polymerase Tps5.3 polyprotein XP_001386649.2 287236 R 322104 CDS PICST_33721 150866755 4841055 join(326614..326618,326738..326759,327000..327536) 1 NC_009048.1 predicted protein 327536 4841055 PICST_33721 Pichia stipitis CBS 6054 predicted protein XP_001386455.2 326614 D 322104 CDS PICST_33722 150866902 4840890 complement(329990..332212) 1 NC_009048.1 go_function: zinc ion binding; predicted protein 332212 4840890 PICST_33722 Pichia stipitis CBS 6054 predicted protein XP_001386650.2 329990 R 322104 CDS PICST_50611 150866756 4841056 332794..333327 1 NC_009048.1 predicted protein 333327 4841056 PICST_50611 Pichia stipitis CBS 6054 predicted protein XP_001386456.2 332794 D 322104 CDS PICST_37161 126140258 4840891 complement(334265..334660) 1 NC_009048.1 go_function: DNA binding; predicted protein 334660 4840891 PICST_37161 Pichia stipitis CBS 6054 predicted protein XP_001386651.1 334265 R 322104 CDS PICST_85793 126139870 4841057 335076..335471 1 NC_009048.1 go_function: DNA binding; predicted protein 335471 4841057 PICST_85793 Pichia stipitis CBS 6054 predicted protein XP_001386457.1 335076 D 322104 CDS PICST_33726 150866757 4840861 337269..338951 1 NC_009048.1 go_process: polysaccharide metabolism; Glucoamylase GLU1 precursor (Glucan 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) 338951 SGA1 4840861 SGA1 Pichia stipitis CBS 6054 Glucoamylase GLU1 precursor (Glucan 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) XP_001386458.2 337269 D 322104 CDS PICST_33727 150866903 4840862 complement(339112..341610) 1 NC_009048.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; conserved hypothetical protein 341610 4840862 PICST_33727 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001386652.2 339112 R 322104 CDS PICST_50363 150866758 4841058 342931..343737 1 NC_009048.1 involved in protection against oxidative damage; go_function: carbonate dehydratase activity; zinc ion binding; go_process: carbon utilization; non-classical export carbonic anhydrase 343737 NCE3 4841058 NCE3 Pichia stipitis CBS 6054 non-classical export carbonic anhydrase XP_001386459.2 342931 D 322104 CDS PICST_79930 126140262 4840863 complement(344235..344906) 1 NC_009048.1 predicted protein 344906 4840863 PICST_79930 Pichia stipitis CBS 6054 predicted protein XP_001386653.1 344235 R 322104 CDS PICST_73961 150866904 4841059 complement(347448..351425) 1 NC_009048.1 go_function: guanyl-nucleotide exchange factor activity; go_process: intracellular signaling cascade; small GTPase mediated signal transduction; predicted protein 351425 4841059 PICST_73961 Pichia stipitis CBS 6054 predicted protein XP_001386654.2 347448 R 322104 CDS PICST_85794 126139876 4841060 352728..353729 1 NC_009048.1 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [EC:1.2.1.12] [KO:K00134]; go_function: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity; go_process: glycolysis; Glyceraldehyde-3-phosphate dehydrogenase 353729 TDH2 4841060 TDH2 Pichia stipitis CBS 6054 Glyceraldehyde-3-phosphate dehydrogenase XP_001386460.1 352728 D 322104 CDS PICST_64663 150866759 4840864 355022..355924 1 NC_009048.1 go_process: intracellular protein transport; predicted protein 355924 4840864 PICST_64663 Pichia stipitis CBS 6054 predicted protein XP_001386461.2 355022 D 322104 CDS PICST_37167 150866760 4840865 356579..357739 1 NC_009048.1 putative mitochondrial carrier protein; go_component: membrane; go_function: binding; go_process: transport; mitochondrial carrier protein 357739 YMC3 4840865 YMC3 Pichia stipitis CBS 6054 mitochondrial carrier protein XP_001386462.2 356579 D 322104 CDS PICST_50417 126140266 4840866 complement(357829..358632) 1 NC_009048.1 go_function: orotidine-5'-phosphate decarboxylase activity; go_process: 'de novo' pyrimidine base biosynthesis; Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) (PYRF) 358632 URA3 4840866 URA3 Pichia stipitis CBS 6054 Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) (PYRF) XP_001386655.1 357829 R 322104 CDS PICST_85638 150866905 4841061 complement(join(358860..362351,362400..363170)) 1 NC_009048.1 GDP/GTP exchange factor for ARF 363170 GEA2 4841061 GEA2 Pichia stipitis CBS 6054 GDP/GTP exchange factor for ARF XP_001386656.2 358860 R 322104 CDS PICST_33737 150866906 4841062 complement(364115..365281) 1 NC_009048.1 predicted protein 365281 4841062 PICST_33737 Pichia stipitis CBS 6054 predicted protein XP_001386657.2 364115 R 322104 CDS PICST_50233 150866761 4841063 365493..366653 1 NC_009048.1 go_process: protein folding; predicted protein 366653 4841063 PICST_50233 Pichia stipitis CBS 6054 predicted protein XP_001386463.2 365493 D 322104 CDS PICST_33739 150866907 4840867 complement(<366829..368650) 1 NC_009048.1 mating-type transcriptional regulator (putative) 368650 SAN1 4840867 SAN1 Pichia stipitis CBS 6054 mating-type transcriptional regulator (putative) XP_001386658.2 <366829 R 322104 CDS PICST_68459 150866908 4841064 complement(369345..371057) 1 NC_009048.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; predicted protein 371057 4841064 PICST_68459 Pichia stipitis CBS 6054 predicted protein XP_001386659.2 369345 R 322104 CDS PICST_91238 150866909 4841065 complement(373269..375953) 1 NC_009048.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 375953 4841065 PICST_91238 Pichia stipitis CBS 6054 predicted protein XP_001386660.2 373269 R 322104 CDS PICST_74163 150866762 4841066 377209..378054 1 NC_009048.1 go_function: oxidoreductase activity; NADH dehydrogenase (ubiquinone) activity; go_process: mitochondrial electron transport, NADH to ubiquinone; NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial precursor 378054 NUO30 4841066 NUO30 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial precursor XP_001386464.2 377209 D 322104 CDS PICST_50269 150866910 4840868 complement(378225..379370) 1 NC_009048.1 go_function: calcium ion binding; predicted protein 379370 4840868 PICST_50269 Pichia stipitis CBS 6054 predicted protein XP_001386661.2 378225 R 322104 CDS PICST_33744 126140280 4841067 complement(380042..380380) 1 NC_009048.1 S. cerevisiae homolog is necessary for sensitivity to a killer toxin (SMK toxin) produced by Pichia Farinosa; SPF1 P-type ATPase 380380 SPF1.3 4841067 SPF1.3 Pichia stipitis CBS 6054 SPF1 P-type ATPase XP_001386662.1 380042 R 322104 CDS PICST_50547 126139886 4841068 383504..385096 1 NC_009048.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; glycerophosphoinositol permease 385096 GIT3 4841068 GIT3 Pichia stipitis CBS 6054 glycerophosphoinositol permease XP_001386465.1 383504 D 322104 CDS PICST_33746 150866911 4840869 complement(<386312..387195) 1 NC_009048.1 predicted protein 387195 4840869 PICST_33746 Pichia stipitis CBS 6054 predicted protein XP_001386663.2 <386312 R 322104 CDS PICST_50168 150866912 4841069 complement(390012..>392030) 1 NC_009048.1 predicted protein >392030 4841069 PICST_50168 Pichia stipitis CBS 6054 predicted protein XP_001386664.2 390012 R 322104 CDS PICST_63844 150866913 4841070 complement(393627..395132) 1 NC_009048.1 mitochondrial NADP+ aldehyde dehydrogenase slight similarity to GAPN (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase); go_function: oxidoreductase activity; go_process: metabolism; mitochondrial aldehyde dehydrogenase 395132 ALD2 4841070 ALD2 Pichia stipitis CBS 6054 mitochondrial aldehyde dehydrogenase XP_001386665.2 393627 R 322104 CDS PICST_74130 126139888 4841071 396399..397508 1 NC_009048.1 threonine aldolase 397508 GLY1 4841071 GLY1 Pichia stipitis CBS 6054 threonine aldolase XP_001386466.1 396399 D 322104 CDS PICST_68463 150866763 4840870 397779..398714 1 NC_009048.1 go_function: magnesium ion binding; phosphopantetheinyltransferase activity; go_process: fatty acid biosynthesis; predicted protein 398714 4840870 PICST_68463 Pichia stipitis CBS 6054 predicted protein XP_001386467.2 397779 D 322104 CDS PICST_33753 150866914 4840871 complement(399099..399986) 1 NC_009048.1 predicted protein 399986 4840871 PICST_33753 Pichia stipitis CBS 6054 predicted protein XP_001386666.2 399099 R 322104 CDS PICST_68464 126140290 4841072 complement(400590..401822) 1 NC_009048.1 hypothetical protein 401822 4841072 PICST_68464 Pichia stipitis CBS 6054 hypothetical protein XP_001386667.1 400590 R 322104 CDS PICST_79863 150866764 4840989 403662..404810 1 NC_009048.1 Type I proteins geranylgeranyltransferase beta subunit (Type I protein geranyl-geranyltransferase beta subunit) (GGTase-I-beta) (PGGT) (RAS proteins geranylgeranyltransferase beta subunit); go_function: catalytic activity; geranylgeranyltransferase beta subunit 404810 CDC43 4840989 CDC43 Pichia stipitis CBS 6054 geranylgeranyltransferase beta subunit XP_001386468.2 403662 D 322104 CDS PICST_91291 150866765 4840872 join(405323..405676,405731..406378) 1 NC_009048.1 go_component: membrane; go_function: binding; go_process: transport; predicted protein 406378 4840872 PICST_91291 Pichia stipitis CBS 6054 predicted protein XP_001386469.2 405323 D 322104 CDS PICST_85722 150866766 4840873 join(406869..407738,407820..408173) 1 NC_009048.1 peroxisomal protein involved in import of peroxisomal matrix proteins; go_component: peroxisome; membrane; Peroxisomal membrane protein PER10 (Peroxin-14) 408173 PEX14 4840873 PEX14 Pichia stipitis CBS 6054 Peroxisomal membrane protein PER10 (Peroxin-14) XP_001386470.2 406869 D 322104 CDS PICST_33758 150866767 4840874 409161..410360 1 NC_009048.1 predicted protein 410360 4840874 PICST_33758 Pichia stipitis CBS 6054 predicted protein XP_001386471.2 409161 D 322104 CDS PICST_64197 150866768 4840875 join(410873..411501,411535..413639,413718..413929) 1 NC_009048.1 predicted protein 413929 4840875 PICST_64197 Pichia stipitis CBS 6054 predicted protein XP_001386472.2 410873 D 322104 CDS PICST_64090 150866769 4840928 415779..417422 1 NC_009048.1 go_component: membrane; go_process: transport; predicted protein 417422 4840928 PICST_64090 Pichia stipitis CBS 6054 predicted protein XP_001386473.2 415779 D 322104 CDS PICST_935 150866770 4840929 join(<419169..419493,420277..>422231) 1 NC_009048.1 Fungal specific transcription factor; go_function: DNA binding; zinc ion binding; Fungal transcriptional regulatory protein 419493 FST4 4840929 FST4 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001386474.2 <419169 D 322104 CDS PICST_74165 126140292 4840930 complement(423107..423934) 1 NC_009048.1 predicted protein 423934 4840930 PICST_74165 Pichia stipitis CBS 6054 predicted protein XP_001386668.1 423107 R 322104 CDS PICST_64411 150866915 4840990 complement(join(424192..426617,426666..427149)) 1 NC_009048.1 endo-1,3-beta-glucanase Daughter Specific Expression 4 427149 ACF4 4840990 ACF4 Pichia stipitis CBS 6054 endo-1,3-beta-glucanase Daughter Specific Expression 4 XP_001386669.2 424192 R 322104 CDS PICST_50416 126139906 4840991 429175..429963 1 NC_009048.1 go_function: electron transporter activity; go_process: electron transport; succinate dehydrogenase subunit 429963 SDH2 4840991 SDH2 Pichia stipitis CBS 6054 succinate dehydrogenase subunit XP_001386475.1 429175 D 322104 CDS PICST_33765 126139908 4840931 431397..432533 1 NC_009048.1 go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; go_process: L-serine biosynthesis; formate dehydrogenase-like protein 432533 FDH1.2 4840931 FDH1.2 Pichia stipitis CBS 6054 formate dehydrogenase-like protein XP_001386476.1 431397 D 322104 CDS PICST_91526 126139910 4840932 433774..434913 1 NC_009048.1 protein with similarity to formate dehydrogenases; go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; go_process: L-serine biosynthesis; formate dehydrogenase-like protein 434913 FDH1.1 4840932 FDH1.1 Pichia stipitis CBS 6054 formate dehydrogenase-like protein XP_001386477.1 433774 D 322104 CDS PICST_33767 150866771 4840933 435132..436481 1 NC_009048.1 predicted protein 436481 4840933 PICST_33767 Pichia stipitis CBS 6054 predicted protein XP_001386478.2 435132 D 322104 CDS PICST_50992 150866916 4840934 complement(436759..437037) 1 NC_009048.1 predicted protein 437037 4840934 PICST_50992 Pichia stipitis CBS 6054 predicted protein XP_001386670.2 436759 R 322104 CDS PICST_79927 150866917 4840992 complement(437343..438083) 1 NC_009048.1 predicted protein 438083 4840992 PICST_79927 Pichia stipitis CBS 6054 predicted protein XP_001386671.2 437343 R 322104 CDS PICST_63959 126139914 4840993 join(438732..438981,439006..>439499) 1 NC_009048.1 predicted protein 438981 4840993 PICST_63959 Pichia stipitis CBS 6054 predicted protein XP_001386479.1 438732 D 322104 CDS PICST_85655 150866918 4840935 complement(join(439939..440239,440261..442205,442269..442734)) 1 NC_009048.1 SIT4 protein phosphatase-associated protein 442734 SAP155 4840935 SAP155 Pichia stipitis CBS 6054 SIT4 protein phosphatase-associated protein XP_001386672.2 439939 R 322104 CDS PICST_68472 150866919 4840994 complement(443841..447500) 1 NC_009048.1 go_component: intracellular; go_process: anti-apoptosis; predicted protein 447500 4840994 PICST_68472 Pichia stipitis CBS 6054 predicted protein XP_001386673.2 443841 R 322104 CDS PICST_66160 150866920 4840995 complement(join(448210..449634,449743..449757)) 1 NC_009048.1 go_component: proton-transporting two-sector ATPase complex; go_function: ATP binding; hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar ATPase V1 domain subunit H (54 kDa) 449757 VMA13 4840995 VMA13 Pichia stipitis CBS 6054 vacuolar ATPase V1 domain subunit H (54 kDa) XP_001386674.2 448210 R 322104 CDS PICST_68474 126140306 4840996 complement(452134..453252) 1 NC_009048.1 Glutamine synthetase (Glutamate--ammonia ligase) (GS) (GLNA); go_function: glutamate-ammonia ligase activity; go_process: nitrogen fixation; Glutamine synthetase (Glutamate--ammonia ligase) (GS) 453252 GLN1 4840996 GLN1 Pichia stipitis CBS 6054 Glutamine synthetase (Glutamate--ammonia ligase) (GS) XP_001386675.1 452134 R 322104 CDS PICST_68475 150866921 4840997 complement(455446..457794) 1 NC_009048.1 predicted protein 457794 4840997 PICST_68475 Pichia stipitis CBS 6054 predicted protein XP_001386676.2 455446 R 322104 CDS PICST_51006 150866922 4840998 complement(458176..>459696) 1 NC_009048.1 go_component: membrane; go_process: transport; lysine-specific permease >459696 LYP1 4840998 LYP1 Pichia stipitis CBS 6054 lysine-specific permease XP_001386677.2 458176 R 322104 CDS PICST_68476 126140312 4840999 complement(460575..461024) 1 NC_009048.1 predicted protein 461024 4840999 PICST_68476 Pichia stipitis CBS 6054 predicted protein XP_001386678.1 460575 R 322104 CDS PICST_33777 150866772 4841000 461713..>462940 1 NC_009048.1 predicted protein >462940 4841000 PICST_33777 Pichia stipitis CBS 6054 predicted protein XP_001386480.2 461713 D 322104 CDS PICST_66162 150866923 4840936 complement(463059..464939) 1 NC_009048.1 go_process: carbohydrate metabolism; glycerol kinase 464939 GUT1 4840936 GUT1 Pichia stipitis CBS 6054 glycerol kinase XP_001386679.2 463059 R 322104 CDS PICST_50616 126140316 4841001 complement(join(466129..466962,467659..>467829)) 1 NC_009048.1 go_function: inositol-trisphosphate 3-kinase activity; predicted protein 466962 4841001 PICST_50616 Pichia stipitis CBS 6054 predicted protein XP_001386680.1 466129 R 322104 CDS PICST_74000 126140318 4841002 complement(<468265..468453) 1 NC_009048.1 predicted protein 468453 4841002 PICST_74000 Pichia stipitis CBS 6054 predicted protein XP_001386681.1 <468265 R 322104 CDS PICST_37188 150866773 4841003 join(471241..471318,471397..471414,471505..471547,471731..472665) 1 NC_009048.1 mannosyltransferase involved in O- and N-linked glycosylation (MNT3); go_component: membrane; go_function: glycolipid 2-alpha-mannosyltransferase activity; go_process: protein amino acid glycosylation; mannosyltransferase 472665 KTR3 4841003 KTR3 Pichia stipitis CBS 6054 mannosyltransferase XP_001386481.2 471241 D 322104 CDS PICST_50897 150866774 4840937 <474305..475819 1 NC_009048.1 predicted protein 475819 4840937 PICST_50897 Pichia stipitis CBS 6054 predicted protein XP_001386482.2 <474305 D 322104 CDS PICST_50523 126139922 4840938 476060..476521 1 NC_009048.1 go_component: clathrin vesicle coat; go_process: intracellular protein transport; predicted protein 476521 4840938 PICST_50523 Pichia stipitis CBS 6054 predicted protein XP_001386483.1 476060 D 322104 CDS PICST_74116 150866775 4840939 481560..482696 1 NC_009048.1 Zn-containing alcohol dehydrogenase [EC:1.1.1.4] [KO:K00004]; go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; Sorbitol dehydrogenase 482696 SOR5 4840939 SOR5 Pichia stipitis CBS 6054 Sorbitol dehydrogenase XP_001386484.2 481560 D 322104 CDS PICST_33784 150866924 4840940 complement(<482892..484181) 1 NC_009048.1 predicted protein 484181 4840940 PICST_33784 Pichia stipitis CBS 6054 predicted protein XP_001386682.2 <482892 R 322104 CDS PICST_79909 126140322 4841004 complement(486499..487332) 1 NC_009048.1 predicted protein 487332 4841004 PICST_79909 Pichia stipitis CBS 6054 predicted protein XP_001386683.1 486499 R 322104 CDS PICST_85539 126139926 4841005 488300..488902 1 NC_009048.1 predicted protein 488902 4841005 PICST_85539 Pichia stipitis CBS 6054 predicted protein XP_001386485.1 488300 D 322104 CDS PICST_33787 150866925 4840941 complement(489732..491492) 1 NC_009048.1 predicted protein 491492 4840941 PICST_33787 Pichia stipitis CBS 6054 predicted protein XP_001386684.2 489732 R 322104 CDS PICST_50793 126139928 4841006 492472..493179 1 NC_009048.1 pyridoxine (pyridoxiamine) phosphate oxidase 493179 PDX3 4841006 PDX3 Pichia stipitis CBS 6054 pyridoxine (pyridoxiamine) phosphate oxidase XP_001386486.1 492472 D 322104 CDS PICST_79943 126140326 4840942 complement(493415..493984) 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 493984 4840942 PICST_79943 Pichia stipitis CBS 6054 predicted protein XP_001386685.1 493415 R 322104 CDS PICST_74138 150866776 4841007 494616..495653 1 NC_009048.1 involved in cytokinesis, cell wall organization, conjugation, and cell division; go_function: GTP binding; go_process: cell cycle; septin 495653 CDC10 4841007 CDC10 Pichia stipitis CBS 6054 septin XP_001386487.2 494616 D 322104 CDS PICST_33791 150866777 4840943 join(496033..496045,496138..497270) 1 NC_009048.1 go_function: nuclease activity; go_process: DNA repair; predicted protein 497270 4840943 PICST_33791 Pichia stipitis CBS 6054 predicted protein XP_001386488.2 496033 D 322104 CDS PICST_63922 126140328 4840944 complement(497484..>498185) 1 NC_009048.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein >498185 4840944 PICST_63922 Pichia stipitis CBS 6054 predicted protein XP_001386686.1 497484 R 322104 CDS PICST_85745 126140330 4840804 complement(499515..500906) 1 NC_009048.1 Fumarase converts fumaric acid to L-malic acid in the TCA cycle; go_function: catalytic activity; fumarase 500906 FUM1 4840804 FUM1 Pichia stipitis CBS 6054 fumarase XP_001386687.1 499515 R 322104 CDS PICST_50184 150866926 4840805 complement(501550..>501888) 1 NC_009048.1 predicted protein >501888 4840805 PICST_50184 Pichia stipitis CBS 6054 predicted protein XP_001386688.2 501550 R 322104 CDS PICST_85453 150866927 4840806 complement(502461..503909) 1 NC_009048.1 go_function: hexokinase activity; ATP binding; go_process: glycolysis; Hexokinase 503909 HXK1 4840806 HXK1 Pichia stipitis CBS 6054 Hexokinase XP_001386689.2 502461 R 322104 CDS PICST_33797 150866928 4840807 complement(504933..505712) 1 NC_009048.1 predicted protein 505712 4840807 PICST_33797 Pichia stipitis CBS 6054 predicted protein XP_001386690.2 504933 R 322104 CDS PICST_33798 150866778 4840808 506092..507033 1 NC_009048.1 predicted protein 507033 4840808 PICST_33798 Pichia stipitis CBS 6054 predicted protein XP_001386489.2 506092 D 322104 CDS PICST_64717 150866779 4840945 join(507439..507500,507534..509820) 1 NC_009048.1 go_component: nucleus; go_function: transcription regulator activity; go_process: regulation of transcription; TFIID and SAGA subunit 509820 TAF5 4840945 TAF5 Pichia stipitis CBS 6054 TFIID and SAGA subunit XP_001386490.2 507439 D 322104 CDS PICST_68488 150866780 4840946 510714..511232 1 NC_009048.1 predicted protein 511232 4840946 PICST_68488 Pichia stipitis CBS 6054 predicted protein XP_001386491.2 510714 D 322104 CDS PICST_68489 150866929 4840947 complement(join(512691..513010,513092..514151)) 1 NC_009048.1 predicted protein 514151 4840947 PICST_68489 Pichia stipitis CBS 6054 predicted protein XP_001386691.2 512691 R 322104 CDS PICST_33802 150866781 4840809 515322..517934 1 NC_009048.1 hypothetical protein 517934 4840809 PICST_33802 Pichia stipitis CBS 6054 hypothetical protein XP_001386492.2 515322 D 322104 CDS PICST_91200 150866782 4840948 518342..521185 1 NC_009048.1 predicted protein 521185 4840948 PICST_91200 Pichia stipitis CBS 6054 predicted protein XP_001386493.2 518342 D 322104 CDS PICST_33804 150866930 4840949 complement(522843..523553) 1 NC_009048.1 predicted protein 523553 4840949 PICST_33804 Pichia stipitis CBS 6054 predicted protein XP_001386692.2 522843 R 322104 CDS PICST_33805 150866931 4840810 complement(525562..526335) 1 NC_009048.1 predicted protein 526335 4840810 PICST_33805 Pichia stipitis CBS 6054 predicted protein XP_001386693.2 525562 R 322104 CDS PICST_79967 126139944 4840811 526633..527097 1 NC_009048.1 go_component: ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 527097 4840811 PICST_79967 Pichia stipitis CBS 6054 predicted protein XP_001386494.1 526633 D 322104 CDS PICST_85558 150866783 4840950 join(527959..528307,528338..528685,528710..529332) 1 NC_009048.1 go_function: ubiquitin-protein ligase activity; go_process: ubiquitin cycle; predicted protein 529332 4840950 PICST_85558 Pichia stipitis CBS 6054 predicted protein XP_001386495.2 527959 D 322104 CDS PICST_64463 150866932 4840951 complement(529427..>532234) 1 NC_009048.1 go_function: ATP binding; ATP-dependent peptidase activity; serine-type endopeptidase activity; go_process: ATP-dependent proteolysis; proteolysis and peptidolysis; predicted protein >532234 4840951 PICST_64463 Pichia stipitis CBS 6054 predicted protein XP_001386694.2 529427 R 322104 CDS PICST_33809 150866933 4840812 complement(533206..534525) 1 NC_009048.1 predicted protein 534525 4840812 PICST_33809 Pichia stipitis CBS 6054 predicted protein XP_001386695.2 533206 R 322104 CDS PICST_50972 150866784 4840813 join(<535077..535548,535600..535763) 1 NC_009048.1 hypothetical protein 535763 4840813 PICST_50972 Pichia stipitis CBS 6054 hypothetical protein XP_001386496.2 <535077 D 322104 CDS PICST_37206 126140348 4840952 complement(535878..537974) 1 NC_009048.1 predicted protein 537974 4840952 PICST_37206 Pichia stipitis CBS 6054 predicted protein XP_001386696.1 535878 R 322104 CDS PICST_33812 150866785 4840814 join(538910..538939,539236..>540269) 1 NC_009048.1 predicted protein 538939 4840814 PICST_33812 Pichia stipitis CBS 6054 predicted protein XP_001386497.2 538910 D 322104 CDS PICST_68494 126140350 4840953 complement(join(540388..540436,541452..541753)) 1 NC_009048.1 go_function: DNA binding; Transcriptional activator HAP3 (UAS2 regulatory protein A) 541753 HAP3.2 4840953 HAP3.2 Pichia stipitis CBS 6054 Transcriptional activator HAP3 (UAS2 regulatory protein A) XP_001386697.1 540388 R 322104 CDS PICST_16981 150866786 4840815 join(<542934..543180,543226..>544640) 1 NC_009048.1 encodes a flippase that is required for translocation of Man5GlcNac2-PP-Dol from the cytoplasmic side to the lumenal side of the ER membrane Oligosaccharide translocation protein RFT1; go_component: integral to membrane; go_process: nuclear division; flippase 543180 RTF1 4840815 RTF1 Pichia stipitis CBS 6054 flippase XP_001386498.2 <542934 D 322104 CDS PICST_50332 150866787 4840954 <545515..546051 1 NC_009048.1 go_function: nucleic acid binding; Zn-finger, CCHC type 546051 4840954 PICST_50332 Pichia stipitis CBS 6054 Zn-finger, CCHC type XP_001386499.2 <545515 D 322104 CDS PICST_50259 126140352 4840955 complement(546497..546781) 1 NC_009048.1 go_component: nucleus; small nucleolar ribonucleoprotein complex; snRNA-associated protein, Sm class 546781 LSM2 4840955 LSM2 Pichia stipitis CBS 6054 snRNA-associated protein, Sm class XP_001386698.1 546497 R 322104 CDS PICST_21174 150866934 4840816 complement(<547957..>548694) 1 NC_009048.1 activates middle sporulation genes; DNA binding transcription factor >548694 NDT802 4840816 NDT802 Pichia stipitis CBS 6054 DNA binding transcription factor XP_001386699.2 <547957 R 322104 CDS PICST_73970 150866788 4840817 549297..552431 1 NC_009048.1 Predicted P-loop ATPase fused to an acetyltransferase 552431 YNN2 4840817 YNN2 Pichia stipitis CBS 6054 Predicted P-loop ATPase fused to an acetyltransferase XP_001386500.2 549297 D 322104 CDS PICST_68496 150866935 4840911 complement(552816..553550) 1 NC_009048.1 predicted protein 553550 4840911 PICST_68496 Pichia stipitis CBS 6054 predicted protein XP_001386700.2 552816 R 322104 CDS PICST_64054 150866789 4840818 join(<555981..556006,556067..556231,556289..556705,556787..556819,556850..557411,557430..557558) 1 NC_009048.1 Predicted signal transduction protein; hypothetical protein 557558 BOP3 4840818 BOP3 Pichia stipitis CBS 6054 hypothetical protein XP_001386501.2 <555981 D 322104 CDS PICST_33820 126139960 4840912 558697..560127 1 NC_009048.1 multidrug resistance transporter 560127 QDR22 4840912 QDR22 Pichia stipitis CBS 6054 multidrug resistance transporter XP_001386502.1 558697 D 322104 CDS PICST_85654 150866936 4840913 complement(561290..562504) 1 NC_009048.1 yeast dnaJ homolog (nuclear envelope protein) heat shock protein similar to Mitochondrial protein import protein (MAS5); go_process: protein folding; yeast dnaJ homolog (nuclear envelope protein) heat shock protein 562504 YDJ1 4840913 YDJ1 Pichia stipitis CBS 6054 yeast dnaJ homolog (nuclear envelope protein) heat shock protein XP_001386701.2 561290 R 322104 CDS PICST_85645 150866937 4840819 complement(join(563272..563769,563782..564888)) 1 NC_009048.1 go_component: membrane; predicted protein 564888 4840819 PICST_85645 Pichia stipitis CBS 6054 predicted protein XP_001386702.2 563272 R 322104 CDS PICST_85755 150866790 4840820 565424..567751 1 NC_009048.1 go_component: actin cytoskeleton; go_function: structural constituent of cytoskeleton; vacuolar targeting, actin-related protein 567751 ARP5 4840820 ARP5 Pichia stipitis CBS 6054 vacuolar targeting, actin-related protein XP_001386503.2 565424 D 322104 CDS PICST_91345 126140362 4840914 complement(567876..569753) 1 NC_009048.1 May participate in nucleolar function during the transition from stationary phase to rapid growth; nucleolar RNA methyltransferase 569753 NOP2 4840914 NOP2 Pichia stipitis CBS 6054 nucleolar RNA methyltransferase XP_001386703.1 567876 R 322104 CDS PICST_33825 150866791 4840821 569995..571431 1 NC_009048.1 go_function: translation initiation factor activity; go_process: regulation of translational initiation; predicted protein 571431 4840821 PICST_33825 Pichia stipitis CBS 6054 predicted protein XP_001386504.2 569995 D 322104 CDS PICST_64451 150866938 4840915 complement(571505..572461) 1 NC_009048.1 S-adenosylmethionine-dependent methyltransferase (HEMK) (bacterial); S-adenosylmethionine-dependent methyltransferase 572461 HEM2 4840915 HEM2 Pichia stipitis CBS 6054 S-adenosylmethionine-dependent methyltransferase XP_001386704.2 571505 R 322104 CDS PICST_50481 150866939 4840822 complement(572975..574390) 1 NC_009048.1 go_function: RNA binding; predicted protein 574390 4840822 PICST_50481 Pichia stipitis CBS 6054 predicted protein XP_001386705.2 572975 R 322104 CDS PICST_68501 150866792 4841152 574686..575753 1 NC_009048.1 predicted protein 575753 4841152 PICST_68501 Pichia stipitis CBS 6054 predicted protein XP_001386505.2 574686 D 322104 CDS PICST_85730 150866793 4840916 join(576347..577630,577661..578992) 1 NC_009048.1 go_function: damaged DNA binding; ATP binding; DNA binding; go_process: mismatch repair; DNA repair; DNA metabolism; predicted protein 578992 4840916 PICST_85730 Pichia stipitis CBS 6054 predicted protein XP_001386506.2 576347 D 322104 CDS PICST_85750 126139970 4840917 581744..582358 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L15-B (YL10) (L13) (RP15R) (YP18) 582358 RPL15A 4840917 RPL15A Pichia stipitis CBS 6054 60S ribosomal protein L15-B (YL10) (L13) (RP15R) (YP18) XP_001386507.1 581744 D 322104 CDS PICST_68505 126139972 4840918 583339..585111 1 NC_009048.1 go_function: IMP cyclohydrolase activity; phosphoribosylaminoimidazolecarboxamide formyltransferase activity; catalytic activity; go_process: purine nucleotide biosynthesis; metabolism; Bifunctional purine biosynthesis protein ADE17 Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase) IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC) 585111 PUR92 4840918 PUR92 Pichia stipitis CBS 6054 Bifunctional purine biosynthesis protein ADE17 Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase) IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC) XP_001386508.1 583339 D 322104 CDS PICST_85463 150866794 4840919 585719..587725 1 NC_009048.1 go_component: nucleus; Translocation protein (NPL1 protein) 587725 SEC63 4840919 SEC63 Pichia stipitis CBS 6054 Translocation protein (NPL1 protein) XP_001386509.2 585719 D 322104 CDS PICST_33834 150866940 4840920 complement(587987..588511) 1 NC_009048.1 go_function: N-acetyltransferase activity; predicted protein 588511 4840920 PICST_33834 Pichia stipitis CBS 6054 predicted protein XP_001386706.2 587987 R 322104 CDS PICST_50959 126139976 4841153 <589217..589573 1 NC_009048.1 predicted protein 589573 4841153 PICST_50959 Pichia stipitis CBS 6054 predicted protein XP_001386510.1 <589217 D 322104 CDS PICST_85667 150866795 4840921 590119..591963 1 NC_009048.1 mRNA export factor mex67; nuclear mRNA export, poly(A)+RNA binding protein 591963 MEX67 4840921 MEX67 Pichia stipitis CBS 6054 nuclear mRNA export, poly(A)+RNA binding protein XP_001386511.2 590119 D 322104 CDS PICST_50490 150866796 4840922 592372..593706 1 NC_009048.1 N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase Lipid transport and metabolism; go_process: biosynthesis; N-acetylglucosaminyl-phosphatidylinositol (GPI) biosynthetic protein 593706 SPT14 4840922 SPT14 Pichia stipitis CBS 6054 N-acetylglucosaminyl-phosphatidylinositol (GPI) biosynthetic protein XP_001386512.2 592372 D 322104 CDS PICST_33838 150866941 4840923 complement(<593837..596504) 1 NC_009048.1 predicted protein 596504 4840923 PICST_33838 Pichia stipitis CBS 6054 predicted protein XP_001386707.2 <593837 R 322104 CDS PICST_50963 126139982 4841154 join(597143..597422,597474..597668,597736..597773) 1 NC_009048.1 go_function: calcium ion binding; predicted protein 597773 4841154 PICST_50963 Pichia stipitis CBS 6054 predicted protein XP_001386513.1 597143 D 322104 CDS PICST_37224 126139984 4840924 598212..599084 1 NC_009048.1 predicted protein 599084 4840924 PICST_37224 Pichia stipitis CBS 6054 predicted protein XP_001386514.1 598212 D 322104 CDS PICST_85761 126140372 4840925 complement(599249..600499) 1 NC_009048.1 go_function: ATP binding; 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal cap subunit) 600499 RPT4 4840925 RPT4 Pichia stipitis CBS 6054 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal cap subunit) XP_001386708.1 599249 R 322104 CDS PICST_64224 150866797 4841155 join(601037..602318,602337..602458) 1 NC_009048.1 translation initiation factor eIF2B subunit 602458 eIF2B 4841155 eIF2B Pichia stipitis CBS 6054 translation initiation factor eIF2B subunit XP_001386515.2 601037 D 322104 CDS PICST_7367 150866942 4840926 complement(<602754..603488) 1 NC_009048.1 predicted protein 603488 4840926 PICST_7367 Pichia stipitis CBS 6054 predicted protein XP_001386709.2 <602754 R 322104 CDS PICST_64252 150866798 4841156 604400..604966 1 NC_009048.1 predicted protein 604966 4841156 PICST_64252 Pichia stipitis CBS 6054 predicted protein XP_001386516.2 604400 D 322104 CDS PICST_33845 150866799 4840927 605280..607403 1 NC_009048.1 go_function: molecular function unknown; predicted protein 607403 4840927 PICST_33845 Pichia stipitis CBS 6054 predicted protein XP_001386517.2 605280 D 322104 CDS PICST_63916 126140376 4840892 complement(607458..>608123) 1 NC_009048.1 go_process: protein biosynthesis; predicted protein >608123 4840892 PICST_63916 Pichia stipitis CBS 6054 predicted protein XP_001386710.1 607458 R 322104 CDS PICST_91441 150866943 4841157 complement(join(608465..608699,608751..609607)) 1 NC_009048.1 protein involved in rRNA processing 609607 IPI1 4841157 IPI1 Pichia stipitis CBS 6054 protein involved in rRNA processing XP_001386711.2 608465 R 322104 CDS PICST_74051 150866800 4841158 610031..611728 1 NC_009048.1 required for cell viability in S. cerevisiae; conserved hypothetical protein 611728 4841158 PICST_74051 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001386518.2 610031 D 322104 CDS PICST_50953 126139994 4840893 <613120..>614583 1 NC_009048.1 multidrug resistance protein 8 sperimidine transporter; Polyamine transport protein (TPO4) >614583 MDR18 4840893 MDR18 Pichia stipitis CBS 6054 Polyamine transport protein (TPO4) XP_001386519.1 <613120 D 322104 CDS PICST_91503 150866801 4840894 join(615608..615907,616094..616184,616287..616671,617032..617123,617229..617923) 1 NC_009048.1 go_component: transcription factor TFIID complex; go_process: transcription initiation; Transcription initiation factor TFIID subunit 12 (TBP-associated factor 12) (TBP-associated factor 61 kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68) 617923 TAF12 4840894 TAF12 Pichia stipitis CBS 6054 Transcription initiation factor TFIID subunit 12 (TBP-associated factor 12) (TBP-associated factor 61 kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68) XP_001386520.2 615608 D 322104 CDS PICST_33851 150866944 4840895 complement(join(618185..619407,619447..619795)) 1 NC_009048.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Serine/threonine-protein kinase STE7 homolog 619795 STE7 4840895 STE7 Pichia stipitis CBS 6054 Serine/threonine-protein kinase STE7 homolog XP_001386712.2 618185 R 322104 CDS PICST_68514 150866945 4841159 complement(621646..623271) 1 NC_009048.1 low similarty to G-box binding factor; G-box binding factor 623271 GBF1 4841159 GBF1 Pichia stipitis CBS 6054 G-box binding factor XP_001386713.2 621646 R 322104 CDS PICST_50220 126140384 4841160 complement(625560..625856) 1 NC_009048.1 predicted protein 625856 4841160 PICST_50220 Pichia stipitis CBS 6054 predicted protein XP_001386714.1 625560 R 322104 CDS PICST_33854 150866802 4841161 join(626487..627363,627397..627827) 1 NC_009048.1 predicted protein 627827 4841161 PICST_33854 Pichia stipitis CBS 6054 predicted protein XP_001386521.2 626487 D 322104 CDS PICST_16856 126140386 4840896 complement(join(<628073..628151,628194..629701)) 1 NC_009048.1 Xylose UpTake (tentative); go_component: integral to membrane; go_function: transporter activity; go_process: transport; high affinity xylose transporter (putative) (HGT3) 629701 XUT4 4840896 XUT4 Pichia stipitis CBS 6054 high affinity xylose transporter (putative) (HGT3) XP_001386715.1 <628073 R 322104 CDS PICST_33856 126140000 4841162 631100..631450 1 NC_009048.1 predicted protein 631450 4841162 PICST_33856 Pichia stipitis CBS 6054 predicted protein XP_001386522.1 631100 D 322104 CDS PICST_85790 150866803 4840897 632258..634837 1 NC_009048.1 DNA replication licensing factor, MCM2 component Member of complex that acts at ARS's to initiate replication; go_function: DNA binding; ATP binding; DNA-dependent ATPase activity; go_process: DNA replication initiation; DNA replication licensing factor, MCM2 component (Minichromosome maintenance protein 2) 634837 MCM2 4840897 MCM2 Pichia stipitis CBS 6054 DNA replication licensing factor, MCM2 component (Minichromosome maintenance protein 2) XP_001386523.2 632258 D 322104 CDS PICST_50823 126140004 4840898 <635520..636419 1 NC_009048.1 Serine/threonine specific protein phosphatase involved in glycogen accumulation; go_function: hydrolase activity; serine/threonine protein phosphatase 636419 MCO15 4840898 MCO15 Pichia stipitis CBS 6054 serine/threonine protein phosphatase XP_001386524.1 <635520 D 322104 CDS PICST_33860 150866804 4840899 638265..638669 1 NC_009048.1 predicted protein 638669 4840899 PICST_33860 Pichia stipitis CBS 6054 predicted protein XP_001386525.2 638265 D 322104 CDS PICST_64135 150866805 4840900 <640545..640994 1 NC_009048.1 predicted protein 640994 4840900 PICST_64135 Pichia stipitis CBS 6054 predicted protein XP_001386526.2 <640545 D 322104 CDS PICST_63979 126140010 4840901 <642122..642310 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 642310 4840901 PICST_63979 Pichia stipitis CBS 6054 predicted protein XP_001386527.1 <642122 D 322104 CDS PICST_50590 150866946 4840902 complement(642614..643408) 1 NC_009048.1 predicted protein 643408 4840902 PICST_50590 Pichia stipitis CBS 6054 predicted protein XP_001386716.2 642614 R 322104 CDS PICST_50268 150866806 4841163 644242..>645396 1 NC_009048.1 predicted protein >645396 4841163 PICST_50268 Pichia stipitis CBS 6054 predicted protein XP_001386528.2 644242 D 322104 CDS PICST_64088 150866947 4840903 complement(join(645691..646445,646503..>647265)) 1 NC_009048.1 go_component: integral to membrane; K+-dependent Na+:Ca2+ antiporter 646445 CAX8 4840903 CAX8 Pichia stipitis CBS 6054 K+-dependent Na+:Ca2+ antiporter XP_001386717.2 645691 R 322104 CDS PICST_50354 150866948 4841164 complement(join(648715..648803,648855..649302)) 1 NC_009048.1 go_function: riboflavin kinase activity; go_process: riboflavin biosynthesis; Riboflavin kinase (Flavin mononucleotide kinase 1) 649302 FMN1 4841164 FMN1 Pichia stipitis CBS 6054 Riboflavin kinase (Flavin mononucleotide kinase 1) XP_001386718.2 648715 R 322104 CDS PICST_74289 126140394 4841165 complement(649627..650598) 1 NC_009048.1 Transaldolase, enzyme in the pentose phosphate pathway; go_process: carbohydrate metabolism; transaldolase 650598 TAL1 4841165 TAL1 Pichia stipitis CBS 6054 transaldolase XP_001386719.1 649627 R 322104 CDS PICST_37241 126140014 4841166 652233..653165 1 NC_009048.1 predicted protein 653165 4841166 PICST_37241 Pichia stipitis CBS 6054 predicted protein XP_001386529.1 652233 D 322104 CDS PICST_33868 150866807 4840904 join(653639..657752,657787..657884) 1 NC_009048.1 predicted protein 657884 4840904 PICST_33868 Pichia stipitis CBS 6054 predicted protein XP_001386530.2 653639 D 322104 CDS PICST_85684 150866949 4840905 complement(658097..660289) 1 NC_009048.1 predicted protein 660289 4840905 PICST_85684 Pichia stipitis CBS 6054 predicted protein XP_001386720.2 658097 R 322104 CDS PICST_64147 150866808 4841167 661198..664920 1 NC_009048.1 Structural maintenance of chromosome 1 (DA-box protein SMC1) (sister chromatid cohesion complex Cohesin, subunit SMC1); go_component: nucleus; go_function: ATP binding; go_process: chromosome segregation; Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) 664920 SMC1 4841167 SMC1 Pichia stipitis CBS 6054 Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) XP_001386531.2 661198 D 322104 CDS PICST_50774 150866809 4840906 665192..666820 1 NC_009048.1 RNA methyltransferase tRNA(m5U54)methyltransferase 666820 TRM1 4840906 TRM1 Pichia stipitis CBS 6054 RNA methyltransferase tRNA(m5U54)methyltransferase XP_001386532.2 665192 D 322104 CDS PICST_64024 150866950 4840907 complement(join(666876..669577,669626..669890)) 1 NC_009048.1 Protein involved in high osmolarity signaling pathway; go_function: RNA binding; go_process: protein biosynthesis; suppressor of glycerol defect 669890 SGD1 4840907 SGD1 Pichia stipitis CBS 6054 suppressor of glycerol defect XP_001386721.2 666876 R 322104 CDS PICST_33873 150866810 4841135 670230..671303 1 NC_009048.1 go_function: ATP binding; 40 kDa putative membrane-spanning ATPase 671303 MSP1 4841135 MSP1 Pichia stipitis CBS 6054 40 kDa putative membrane-spanning ATPase XP_001386533.2 670230 D 322104 CDS PICST_33874 150866811 4840908 672339..674972 1 NC_009048.1 mitochondrial inner membrane protein putative role in early maturation of pre-rRNA and mitochondrial maintenance; mitochondrial inner membrane protein 674972 PRP12 4840908 PRP12 Pichia stipitis CBS 6054 mitochondrial inner membrane protein XP_001386534.2 672339 D 322104 CDS PICST_64139 150866951 4840909 complement(675057..>676058) 1 NC_009048.1 go_function: cysteine-type peptidase activity; go_process: proteolysis and peptidolysis; predicted protein >676058 4840909 PICST_64139 Pichia stipitis CBS 6054 predicted protein XP_001386722.2 675057 R 322104 CDS PICST_68519 150866812 4841136 677757..678926 1 NC_009048.1 Sericin-2 (Silk gum protein 2) 678926 SER2 4841136 SER2 Pichia stipitis CBS 6054 Sericin-2 (Silk gum protein 2) XP_001386535.2 677757 D 322104 CDS PICST_33877 150866813 4840910 679855..682200 1 NC_009048.1 Vacuolar transporter chaperone 2 (Phosphate metabolism protein 1); regulated by PHO system; Phosphate metabolism transcription protein 682200 VTC2 4840910 VTC2 Pichia stipitis CBS 6054 Phosphate metabolism transcription protein XP_001386536.2 679855 D 322104 CDS PICST_85787 150866814 4840956 682710..683282 1 NC_009048.1 Golgi-to-ER vesicle coat component Coatomer zeta subunit (Zeta-coat protein) (Zeta-COP); go_component: clathrin vesicle coat; go_process: intracellular protein transport; Golgi-to-ER vesicle coat component 683282 RET3 4840956 RET3 Pichia stipitis CBS 6054 Golgi-to-ER vesicle coat component XP_001386537.2 682710 D 322104 CDS PICST_64026 150866815 4840957 683746..685011 1 NC_009048.1 cysteine desulfurase Selenocysteine lyase 685011 CSD2 4840957 CSD2 Pichia stipitis CBS 6054 cysteine desulfurase Selenocysteine lyase XP_001386538.2 683746 D 322104 CDS PICST_64106 150866816 4840958 join(685393..686092,686108..686484) 1 NC_009048.1 TBP-complexed protein (TAF 2) Transcription initiation factor TFIID subunit 3 (TBP-associated factor 3) (TBP-associated factor 47 kDa) (TAFII-47) (TAFII47); TBP-complexed protein (TAF 2) 686484 TAF47 4840958 TAF47 Pichia stipitis CBS 6054 TBP-complexed protein (TAF 2) XP_001386539.2 685393 D 322104 CDS PICST_68522 150866817 4840959 join(688880..688972,689024..689477,689553..690499) 1 NC_009048.1 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain 690499 RBP5 4840959 RBP5 Pichia stipitis CBS 6054 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain XP_001386540.2 688880 D 322104 CDS PICST_64329 150866818 4840960 join(<691052..691454,691488..692259,692284..692737) 1 NC_009048.1 conserved hypothetical protein, mitochondrial 692737 DEM1 4840960 DEM1 Pichia stipitis CBS 6054 conserved hypothetical protein, mitochondrial XP_001386541.2 <691052 D 322104 CDS PICST_33883 150866952 4840961 complement(693284..694069) 1 NC_009048.1 histidine triad superfamily, third branch 694069 HNT3 4840961 HNT3 Pichia stipitis CBS 6054 histidine triad superfamily, third branch XP_001386723.2 693284 R 322104 CDS PICST_64209 126140404 4841137 complement(694270..694626) 1 NC_009048.1 SMK killer toxin resistance protein 694626 PKR1 4841137 PKR1 Pichia stipitis CBS 6054 SMK killer toxin resistance protein XP_001386724.1 694270 R 322104 CDS PICST_79785 150866819 4841138 join(695124..695173,695243..695976,695992..696081,696196..696830,696852..697022,697089..697175) 1 NC_009048.1 transcriptional repressor general negative regulator of transcription subunit 4 697175 NOT4 4841138 NOT4 Pichia stipitis CBS 6054 transcriptional repressor general negative regulator of transcription subunit 4 XP_001386542.2 695124 D 322104 CDS PICST_33885 150866953 4840962 complement(697427..698371) 1 NC_009048.1 hypothetical protein 698371 4840962 PICST_33885 Pichia stipitis CBS 6054 hypothetical protein XP_001386725.2 697427 R 322104 CDS PICST_63933 150866954 4841139 complement(join(699184..701783,701895..702246)) 1 NC_009048.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; isoleucine-tRNA ligase 702246 ISM1 4841139 ISM1 Pichia stipitis CBS 6054 isoleucine-tRNA ligase XP_001386726.2 699184 R 322104 CDS PICST_85554 126140410 4841140 complement(join(702911..704140,704674..704754,704945..705034)) 1 NC_009048.1 Citrate synthase, mitochondrial precursor; go_function: citrate (Si)-synthase activity; go_process: tricarboxylic acid cycle; citrate synthase (CISY) 705034 CIT1 4841140 CIT1 Pichia stipitis CBS 6054 citrate synthase (CISY) XP_001386727.1 702911 R 322104 CDS PICST_74151 150866820 4841141 707306..708286 1 NC_009048.1 go_function: protein tyrosine/serine/threonine phosphatase activity; go_process: protein amino acid dephosphorylation; nitrogen starvation-induced protein phosphatase 708286 YVH1 4841141 YVH1 Pichia stipitis CBS 6054 nitrogen starvation-induced protein phosphatase XP_001386543.2 707306 D 322104 CDS PICST_50402 150866955 4840963 complement(join(709915..709968,710017..711309)) 1 NC_009048.1 predicted protein 711309 4840963 PICST_50402 Pichia stipitis CBS 6054 predicted protein XP_001386728.2 709915 R 322104 CDS PICST_50222 150866821 4841142 711592..711984 1 NC_009048.1 predicted protein 711984 4841142 PICST_50222 Pichia stipitis CBS 6054 predicted protein XP_001386544.2 711592 D 322104 CDS PICST_16628 150866956 4840964 complement(join(<712427..713630,713664..>713995)) 1 NC_009048.1 predicted protein 713630 4840964 PICST_16628 Pichia stipitis CBS 6054 predicted protein XP_001386729.2 <712427 R 322104 CDS PICST_91506 150866822 4841143 718275..721085 1 NC_009048.1 RHO protein signal transduction 721085 BOI2 4841143 BOI2 Pichia stipitis CBS 6054 RHO protein signal transduction XP_001386545.2 718275 D 322104 CDS PICST_63917 150866823 4840965 join(721764..722357,722829..723950) 1 NC_009048.1 Anaphase promoting complex subunit CDC27 (Cell division control protein 27) (Anaphase promoting complex subunit 3) 723950 CDC27 4840965 CDC27 Pichia stipitis CBS 6054 Anaphase promoting complex subunit CDC27 (Cell division control protein 27) (Anaphase promoting complex subunit 3) XP_001386546.2 721764 D 322104 CDS PICST_50995 150866824 4840966 725707..727701 1 NC_009048.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; predicted protein 727701 4840966 PICST_50995 Pichia stipitis CBS 6054 predicted protein XP_001386547.2 725707 D 322104 CDS PICST_91482 126140416 4840967 complement(727944..728729) 1 NC_009048.1 ATP synthase gamma chain, mitochondrial precursor; go_component: membrane; proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP synthase gamma subunit 728729 ATP3 4840967 ATP3 Pichia stipitis CBS 6054 ATP synthase gamma subunit XP_001386730.1 727944 R 322104 CDS PICST_50217 126140418 4841144 complement(730280..730471) 1 NC_009048.1 predicted protein 730471 4841144 PICST_50217 Pichia stipitis CBS 6054 predicted protein XP_001386731.1 730280 R 322104 CDS PICST_50925 150866825 4841145 731194..734100 1 NC_009048.1 predicted protein 734100 4841145 PICST_50925 Pichia stipitis CBS 6054 predicted protein XP_001386548.2 731194 D 322104 CDS PICST_50569 150866957 4840968 complement(join(<734415..735020,735069..735611)) 1 NC_009048.1 go_component: membrane; potential iron permease membrane protein 735611 FTH2 4840968 FTH2 Pichia stipitis CBS 6054 potential iron permease membrane protein XP_001386732.2 <734415 R 322104 CDS PICST_50439 150866958 4841146 complement(736374..>736817) 1 NC_009048.1 predicted protein >736817 4841146 PICST_50439 Pichia stipitis CBS 6054 predicted protein XP_001386733.2 736374 R 322104 CDS PICST_85698 126140424 4841147 complement(join(738029..740547,740599..740971)) 1 NC_009048.1 sulfate transporter Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) 740971 SUL1 4841147 SUL1 Pichia stipitis CBS 6054 sulfate transporter Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) XP_001386734.1 738029 R 322104 CDS PICST_50410 126140054 4841148 742848..746294 1 NC_009048.1 go_component: cytoplasm; go_function: ligase activity; ATP binding; carbamoyl-phosphate synthase activity; go_process: metabolism; arginine biosynthesis; pyrimidine base biosynthesis; Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) 746294 CPA2 4841148 CPA2 Pichia stipitis CBS 6054 Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) XP_001386549.1 742848 D 322104 CDS PICST_16494 126140056 4840969 <747342..>748994 1 NC_009048.1 Siderophore Iron Transport >748994 ARN2 4840969 ARN2 Pichia stipitis CBS 6054 Siderophore Iron Transport XP_001386550.1 <747342 D 322104 CDS PICST_63832 150866826 4840970 join(750355..750581,750638..752123) 1 NC_009048.1 putative ion transporter 752123 HOL31 4840970 HOL31 Pichia stipitis CBS 6054 putative ion transporter XP_001386551.2 750355 D 322104 CDS PICST_64082 150866959 4840971 complement(752228..753109) 1 NC_009048.1 go_component: endoplasmic reticulum; Golgi apparatus; go_function: intracellular transporter activity; go_process: intracellular protein transport; predicted protein 753109 4840971 PICST_64082 Pichia stipitis CBS 6054 predicted protein XP_001386735.2 752228 R 322104 CDS PICST_64334 150866827 4841149 753413..754003 1 NC_009048.1 predicted protein 754003 4841149 PICST_64334 Pichia stipitis CBS 6054 predicted protein XP_001386552.2 753413 D 322104 CDS PICST_64277 126140428 4840972 complement(754219..755184) 1 NC_009048.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 755184 4840972 PICST_64277 Pichia stipitis CBS 6054 predicted protein XP_001386736.1 754219 R 322104 CDS PICST_68531 150866828 4841150 755469..758813 1 NC_009048.1 predicted protein 758813 4841150 PICST_68531 Pichia stipitis CBS 6054 predicted protein XP_001386553.2 755469 D 322104 CDS PICST_64096 126140064 4840973 join(<759165..759219,759265..759776) 1 NC_009048.1 go_process: protein folding; predicted protein 759776 4840973 PICST_64096 Pichia stipitis CBS 6054 predicted protein XP_001386554.1 <759165 D 322104 CDS PICST_50442 126140066 4841073 760392..761525 1 NC_009048.1 homo-isocitrate dehydrogenase, an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate; go_function: oxidoreductase activity; go_process: metabolism; homo- isocitrate dehydrogenase 761525 LYS12 4841073 LYS12 Pichia stipitis CBS 6054 homo- isocitrate dehydrogenase XP_001386555.1 760392 D 322104 CDS PICST_91430 150866960 4841074 complement(join(761612..761706,761770..762829)) 1 NC_009048.1 predicted protein 762829 4841074 PICST_91430 Pichia stipitis CBS 6054 predicted protein XP_001386737.2 761612 R 322104 CDS PICST_64595 150866829 4841151 join(763128..763385,763482..763619,763659..765233) 1 NC_009048.1 go_component: nucleus; go_function: DNA binding; predicted protein 765233 4841151 PICST_64595 Pichia stipitis CBS 6054 predicted protein XP_001386556.2 763128 D 322104 CDS PICST_64550 150866830 4841075 join(765615..765808,765824..766277) 1 NC_009048.1 Phosphatidylinositol N-acetylglucosaminyltransferase subunit H (Phosphatidylinositol-glycan biosynthesis, class H protein) (PIG-H) 766277 PIG7 4841075 PIG7 Pichia stipitis CBS 6054 Phosphatidylinositol N-acetylglucosaminyltransferase subunit H (Phosphatidylinositol-glycan biosynthesis, class H protein) (PIG-H) XP_001386557.2 765615 D 322104 CDS PICST_68533 150866831 4841076 768770..769642 1 NC_009048.1 predicted protein 769642 4841076 PICST_68533 Pichia stipitis CBS 6054 predicted protein XP_001386558.2 768770 D 322104 CDS PICST_50946 150866832 4841077 770046..771764 1 NC_009048.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; protein biosynthesis; prolyl-tRNA synthetase, cytoplasmic 771764 PRS3 4841077 PRS3 Pichia stipitis CBS 6054 prolyl-tRNA synthetase, cytoplasmic XP_001386559.2 770046 D 322104 CDS PICST_64118 126140432 4841078 complement(772033..>772302) 1 NC_009048.1 predicted protein >772302 4841078 PICST_64118 Pichia stipitis CBS 6054 predicted protein XP_001386738.1 772033 R 322104 CDS PICST_68534 126140076 4841008 join(773178..773587,773642..775328) 1 NC_009048.1 predicted protein 775328 4841008 PICST_68534 Pichia stipitis CBS 6054 predicted protein XP_001386560.1 773178 D 322104 CDS PICST_85643 150866833 4841079 join(777253..778623,778645..778755) 1 NC_009048.1 go_function: catalytic activity; predicted protein 778755 4841079 PICST_85643 Pichia stipitis CBS 6054 predicted protein XP_001386561.2 777253 D 322104 CDS PICST_50903 150866834 4841080 780319..>781977 1 NC_009048.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; predicted protein >781977 4841080 PICST_50903 Pichia stipitis CBS 6054 predicted protein XP_001386562.2 780319 D 322104 CDS PICST_64467 150866961 4841081 complement(join(782431..782736,782754..782783,782824..783732)) 1 NC_009048.1 predicted protein 783732 4841081 PICST_64467 Pichia stipitis CBS 6054 predicted protein XP_001386739.2 782431 R 322104 CDS PICST_63964 150866835 4841009 783890..784510 1 NC_009048.1 predicted protein 784510 4841009 PICST_63964 Pichia stipitis CBS 6054 predicted protein XP_001386563.2 783890 D 322104 CDS PICST_64167 150866836 4841082 784735..785331 1 NC_009048.1 predicted protein 785331 4841082 PICST_64167 Pichia stipitis CBS 6054 predicted protein XP_001386564.2 784735 D 322104 CDS PICST_74096 150866962 4841083 complement(785511..787157) 1 NC_009048.1 go_component: nucleus; go_function: DNA binding; predicted protein 787157 4841083 PICST_74096 Pichia stipitis CBS 6054 predicted protein XP_001386740.2 785511 R 322104 CDS PICST_85710 126140438 4841010 complement(join(788678..790216,790296..790301)) 1 NC_009048.1 go_function: oxo-acid-lyase activity; go_process: biosynthesis; anthranilate synthase component 790301 TRP2 4841010 TRP2 Pichia stipitis CBS 6054 anthranilate synthase component XP_001386741.1 788678 R 322104 CDS PICST_63928 150866963 4841011 complement(join(790678..791598,791632..>793557)) 1 NC_009048.1 predicted protein 791598 4841011 PICST_63928 Pichia stipitis CBS 6054 predicted protein XP_001386742.2 790678 R 322104 CDS PICST_37279 126140086 4841012 794264..794707 1 NC_009048.1 go_component: spliceosome complex; go_process: mitosis; predicted protein 794707 4841012 PICST_37279 Pichia stipitis CBS 6054 predicted protein XP_001386565.1 794264 D 322104 CDS PICST_50642 150866964 4841084 complement(794818..795459) 1 NC_009048.1 predicted protein 795459 4841084 PICST_50642 Pichia stipitis CBS 6054 predicted protein XP_001386743.2 794818 R 322104 CDS PICST_50486 126140444 4841013 complement(<796535..>796882) 1 NC_009048.1 go_function: DNA binding; CCAAT- binding transcription factor component >796882 HAP5 4841013 HAP5 Pichia stipitis CBS 6054 CCAAT- binding transcription factor component XP_001386744.1 <796535 R 322104 CDS PICST_63965 150866965 4841014 complement(797710..799146) 1 NC_009048.1 predicted protein 799146 4841014 PICST_63965 Pichia stipitis CBS 6054 predicted protein XP_001386745.2 797710 R 322104 CDS PICST_33929 150866966 4841015 complement(799525..800418) 1 NC_009048.1 predicted protein 800418 4841015 PICST_33929 Pichia stipitis CBS 6054 predicted protein XP_001386746.2 799525 R 322104 CDS PICST_33930 150866837 4841016 801438..803171 1 NC_009048.1 putative allantoate permease; go_function: DNA binding; allantoate permease 803171 DAL12 4841016 DAL12 Pichia stipitis CBS 6054 allantoate permease XP_001386566.2 801438 D 322104 CDS PICST_73960 150866838 4841085 807087..>811091 1 NC_009048.1 predicted protein >811091 4841085 PICST_73960 Pichia stipitis CBS 6054 predicted protein XP_001386567.2 807087 D 322104 CDS PICST_85553 150866839 4841086 812469..814274 1 NC_009048.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; Putative transporter 814274 MDR112 4841086 MDR112 Pichia stipitis CBS 6054 Putative transporter XP_001386568.2 812469 D 322104 CDS PICST_85543 150866840 4841087 814732..815937 1 NC_009048.1 go_function: GTP binding; molecular function unknown; predicted protein 815937 4841087 PICST_85543 Pichia stipitis CBS 6054 predicted protein XP_001386569.2 814732 D 322104 CDS PICST_63914 150866841 4841088 join(817728..819261,819310..819407) 1 NC_009048.1 go_function: catalytic activity; go_process: metabolism; phosphatidylglycerolphosphate synthase 819407 PGS1 4841088 PGS1 Pichia stipitis CBS 6054 phosphatidylglycerolphosphate synthase XP_001386570.2 817728 D 322104 CDS PICST_64481 126140450 4841119 complement(<819695..820441) 1 NC_009048.1 predicted protein 820441 4841119 PICST_64481 Pichia stipitis CBS 6054 predicted protein XP_001386747.1 <819695 R 322104 CDS PICST_64133 150866842 4841017 join(821271..821613,821662..822125) 1 NC_009048.1 predicted protein 822125 4841017 PICST_64133 Pichia stipitis CBS 6054 predicted protein XP_001386571.2 821271 D 322104 CDS PICST_25920 150866843 4841120 join(<823286..823946,824013..824282,824301..>824641) 1 NC_009048.1 predicted protein 824282 4841120 PICST_25920 Pichia stipitis CBS 6054 predicted protein XP_001386572.2 <823286 D 322104 CDS PICST_33937 150866844 4841121 825356..825850 1 NC_009048.1 predicted protein 825850 4841121 PICST_33937 Pichia stipitis CBS 6054 predicted protein XP_001386573.2 825356 D 322104 CDS PICST_73959 150866845 4841122 826886..>829888 1 NC_009048.1 predicted protein >829888 4841122 PICST_73959 Pichia stipitis CBS 6054 predicted protein XP_001386574.2 826886 D 322104 CDS PICST_68561 150866967 4841123 complement(831691..832812) 1 NC_009048.1 go_function: oxidoreductase activity; go_process: metabolism; 3-isopropylmalate dehydrogenase 832812 LEU2 4841123 LEU2 Pichia stipitis CBS 6054 3-isopropylmalate dehydrogenase XP_001386748.2 831691 R 322104 CDS PICST_85588 126140454 4840845 complement(join(833388..833816,834107..835159)) 1 NC_009048.1 go_function: transaminase activity; go_process: metabolism; predicted protein 835159 4840845 PICST_85588 Pichia stipitis CBS 6054 predicted protein XP_001386749.1 833388 R 322104 CDS PICST_50535 150866968 4840846 complement(join(835867..836667,836730..836762)) 1 NC_009048.1 go_component: membrane; go_function: binding; go_process: transport; Mitochondrial carrier protein PET8 836762 PET8 4840846 PET8 Pichia stipitis CBS 6054 Mitochondrial carrier protein PET8 XP_001386750.2 835867 R 322104 CDS PICST_64178 150866969 4840847 complement(join(837112..837949,837986..838245)) 1 NC_009048.1 predicted protein 838245 4840847 PICST_64178 Pichia stipitis CBS 6054 predicted protein XP_001386751.2 837112 R 322104 CDS PICST_68547 150866970 4840848 complement(838685..839815) 1 NC_009048.1 hypothetical protein 839815 4840848 PICST_68547 Pichia stipitis CBS 6054 hypothetical protein XP_001386752.2 838685 R 322104 CDS PICST_33945 126140106 4840849 841990..843219 1 NC_009048.1 predicted protein 843219 4840849 PICST_33945 Pichia stipitis CBS 6054 predicted protein XP_001386575.1 841990 D 322104 CDS PICST_50236 150866846 4841124 843534..844337 1 NC_009048.1 predicted protein 844337 4841124 PICST_50236 Pichia stipitis CBS 6054 predicted protein XP_001386576.2 843534 D 322104 CDS PICST_64520 150866971 4841125 complement(join(844572..844729,844757..845459)) 1 NC_009048.1 predicted protein 845459 4841125 PICST_64520 Pichia stipitis CBS 6054 predicted protein XP_001386753.2 844572 R 322104 CDS PICST_64379 150866972 4840850 complement(846377..849148) 1 NC_009048.1 calcium/mangenease P-type ATPase Pmr1p, a member of the SERCA family of CaATPases, plays an important role in the transport of Ca++ into Golgi; go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; catalytic activity; go_process: cation transport; metabolism; calcium/mangenease P-type ATPase 849148 PMR1 4840850 PMR1 Pichia stipitis CBS 6054 calcium/mangenease P-type ATPase XP_001386754.2 846377 R 322104 CDS PICST_33949 150866973 4840851 complement(850403..851566) 1 NC_009048.1 predicted protein 851566 4840851 PICST_33949 Pichia stipitis CBS 6054 predicted protein XP_001386755.2 850403 R 322104 CDS PICST_79723 150866974 4840852 complement(852243..855365) 1 NC_009048.1 go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; predicted protein 855365 4840852 PICST_79723 Pichia stipitis CBS 6054 predicted protein XP_001386756.2 852243 R 322104 CDS PICST_64686 150866847 4840853 855999..856466 1 NC_009048.1 Membrane protein involved in organellar division 856466 FIS1 4840853 FIS1 Pichia stipitis CBS 6054 Membrane protein involved in organellar division XP_001386577.2 855999 D 322104 CDS PICST_50851 150866848 4841126 856824..858008 1 NC_009048.1 predicted protein 858008 4841126 PICST_50851 Pichia stipitis CBS 6054 predicted protein XP_001386578.2 856824 D 322104 CDS PICST_64337 150866975 4841127 complement(<858285..858830) 1 NC_009048.1 ankyrin repeat protein 858830 ANK2 4841127 ANK2 Pichia stipitis CBS 6054 ankyrin repeat protein XP_001386757.2 <858285 R 322104 CDS PICST_50761 150866849 4840854 859708..860406 1 NC_009048.1 go_function: ribulose-phosphate 3-epimerase activity; go_process: carbohydrate metabolism; D-ribulose-5-phosphate 3- epimerase 860406 RPE1 4840854 RPE1 Pichia stipitis CBS 6054 D-ribulose-5-phosphate 3- epimerase XP_001386579.2 859708 D 322104 CDS PICST_66212 126140472 4841128 complement(860788..861261) 1 NC_009048.1 predicted protein 861261 4841128 PICST_66212 Pichia stipitis CBS 6054 predicted protein XP_001386758.1 860788 R 322104 CDS PICST_33956 150866850 4840855 862344..864746 1 NC_009048.1 go_function: peptidase activity; go_process: proteolysis and peptidolysis; membrane protein involved in vacuolar protein sorting 864746 VPS70 4840855 VPS70 Pichia stipitis CBS 6054 membrane protein involved in vacuolar protein sorting XP_001386580.2 862344 D 322104 CDS PICST_33957 150866851 4841129 865300..868002 1 NC_009048.1 predicted protein 868002 4841129 PICST_33957 Pichia stipitis CBS 6054 predicted protein XP_001386581.2 865300 D 322104 CDS PICST_63845 150866852 4841130 <869503..>870288 1 NC_009048.1 predicted protein >870288 4841130 PICST_63845 Pichia stipitis CBS 6054 predicted protein XP_001386582.2 <869503 D 322104 CDS PICST_64548 150866976 4841131 complement(870558..873068) 1 NC_009048.1 predicted protein 873068 4841131 PICST_64548 Pichia stipitis CBS 6054 predicted protein XP_001386759.2 870558 R 322104 CDS PICST_33961 150866853 4840856 873434..874285 1 NC_009048.1 predicted protein 874285 4840856 PICST_33961 Pichia stipitis CBS 6054 predicted protein XP_001386583.2 873434 D 322104 CDS PICST_79777 150866854 4841132 875645..877441 1 NC_009048.1 go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; predicted protein 877441 4841132 PICST_79777 Pichia stipitis CBS 6054 predicted protein XP_001386584.2 875645 D 322104 CDS PICST_50195 126140126 4841133 878465..879130 1 NC_009048.1 predicted protein 879130 4841133 PICST_50195 Pichia stipitis CBS 6054 predicted protein XP_001386585.1 878465 D 322104 CDS PICST_50467 126140476 4841103 complement(879400..880053) 1 NC_009048.1 predicted protein 880053 4841103 PICST_50467 Pichia stipitis CBS 6054 predicted protein XP_001386760.1 879400 R 322104 CDS PICST_63848 150866977 4840857 complement(join(880289..882838,882974..883605,883709..>883745)) 1 NC_009048.1 go_process: cell adhesion; hypothetical protein 883605 4840857 PICST_63848 Pichia stipitis CBS 6054 hypothetical protein XP_001386761.2 880289 R 322104 CDS PICST_64516 150866855 4840858 884886..886091 1 NC_009048.1 go_component: membrane; predicted protein 886091 4840858 PICST_64516 Pichia stipitis CBS 6054 predicted protein XP_001386586.2 884886 D 322104 CDS PICST_33967 150866856 4841104 join(887154..888638,888699..888992) 1 NC_009048.1 Ferric reductase transmembrane component 7 (Ferric-chelate reductase 7)(8 domains); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; Ferric reductase transmembrane component 7 (Ferric-chelate reductase 7) 888992 FRE7 4841104 FRE7 Pichia stipitis CBS 6054 Ferric reductase transmembrane component 7 (Ferric-chelate reductase 7) XP_001386587.2 887154 D 322104 CDS PICST_68551 126140480 4841105 complement(889580..890635) 1 NC_009048.1 similarity to cinnamyl-alcohol dehydrogenase; hypothetical protein 890635 CAD5 4841105 CAD5 Pichia stipitis CBS 6054 hypothetical protein XP_001386762.1 889580 R 322104 CDS PICST_91253 126140132 4840859 893996..895582 1 NC_009048.1 similar to High-affinity glucose transporter ScRGT2 similar to Candida intermedia xylose transporter GXS1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; glucose transporter/sensor 895582 RGT2 4840859 RGT2 Pichia stipitis CBS 6054 glucose transporter/sensor XP_001386588.1 893996 D 322104 CDS PICST_33971 126140134 4841106 905585..907219 1 NC_009048.1 xylose uptake (tentative); go_component: integral to membrane; go_function: transporter activity; go_process: transport; Sugar transporter, putative (STL12) 907219 XUT6 4841106 XUT6 Pichia stipitis CBS 6054 Sugar transporter, putative (STL12) XP_001386589.1 905585 D 322104 CDS PICST_85593 150866857 4841107 908007..908660 1 NC_009048.1 dethiobiotin synthetase 908660 BIO4 4841107 BIO4 Pichia stipitis CBS 6054 dethiobiotin synthetase XP_001386590.2 908007 D 322104 CDS PICST_63831 126140482 4841108 complement(908942..909568) 1 NC_009048.1 go_function: superoxide dismutase activity; metal ion binding; go_process: superoxide metabolism; manganese-superoxide dismutase 909568 SOD3.1 4841108 SOD3.1 Pichia stipitis CBS 6054 manganese-superoxide dismutase XP_001386763.1 908942 R 322104 CDS PICST_50392 150866978 4840860 complement(join(910418..910714,910793..911170,911255..912367)) 1 NC_009048.1 Ferric reductase, NADH/NADPH oxidase transmembrane component (FRP2) (FRP1); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; Ferric reductase, NADH/NADPH oxidase transmembrane component (5 domains) 912367 FRE4.2 4840860 FRE4.2 Pichia stipitis CBS 6054 Ferric reductase, NADH/NADPH oxidase transmembrane component (5 domains) XP_001386764.2 910418 R 322104 CDS PICST_64387 150866858 4841018 914165..>914575 1 NC_009048.1 predicted protein >914575 4841018 PICST_64387 Pichia stipitis CBS 6054 predicted protein XP_001386591.2 914165 D 322104 CDS PICST_50783 150866859 4841109 <915593..>915952 1 NC_009048.1 predicted protein >915952 4841109 PICST_50783 Pichia stipitis CBS 6054 predicted protein XP_001386592.2 <915593 D 322104 CDS PICST_91378 150866860 4841110 921437..923371 1 NC_009048.1 GTPase activating protein (GAP) for RHO 923371 SAC7 4841110 SAC7 Pichia stipitis CBS 6054 GTPase activating protein (GAP) for RHO XP_001386593.2 921437 D 322104 CDS PICST_64280 150866861 4841111 join(923940..924023,924108..925067) 1 NC_009048.1 member of the RNA polymerase II-associated Paf1 complex 925067 LEO1 4841111 LEO1 Pichia stipitis CBS 6054 member of the RNA polymerase II-associated Paf1 complex XP_001386594.2 923940 D 322104 CDS PICST_63834 150866862 4841112 925625..926314 1 NC_009048.1 go_function: ATP binding; adenylate kinase activity; Adenylate kinase 2 (mitochondrial GTP:AMP phosphotransferase) 926314 ADK2 4841112 ADK2 Pichia stipitis CBS 6054 Adenylate kinase 2 (mitochondrial GTP:AMP phosphotransferase) XP_001386595.2 925625 D 322104 CDS PICST_50344 126140148 4841113 926894..929275 1 NC_009048.1 yeast homolog of human TFIIH; go_component: nucleus; go_function: ATP-dependent DNA helicase activity; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; go_process: nucleotide-excision repair; DNA helicase component of transcription factor b 929275 RAD3 4841113 RAD3 Pichia stipitis CBS 6054 DNA helicase component of transcription factor b XP_001386596.1 926894 D 322104 CDS PICST_64180 150866863 4841114 929655..930890 1 NC_009048.1 Actin-like protein (similar to ARP2) (Actin-related protein 2); Actin-like protein (Actin-related protein 2) 930890 ARP10 4841114 ARP10 Pichia stipitis CBS 6054 Actin-like protein (Actin-related protein 2) XP_001386597.2 929655 D 322104 CDS PICST_33982 150866979 4841115 complement(930902..931849) 1 NC_009048.1 predicted protein 931849 4841115 PICST_33982 Pichia stipitis CBS 6054 predicted protein XP_001386765.2 930902 R 322104 CDS PICST_33983 150866980 4841019 complement(932133..932441) 1 NC_009048.1 predicted protein 932441 4841019 PICST_33983 Pichia stipitis CBS 6054 predicted protein XP_001386766.2 932133 R 322104 CDS PICST_50804 126140152 4841020 932986..933780 1 NC_009048.1 go_process: endocytosis; predicted protein 933780 4841020 PICST_50804 Pichia stipitis CBS 6054 predicted protein XP_001386598.1 932986 D 322104 CDS PICST_68555 150866864 4841116 936628..940569 1 NC_009048.1 predicted protein 940569 4841116 PICST_68555 Pichia stipitis CBS 6054 predicted protein XP_001386599.2 936628 D 322104 CDS PICST_85528 150866865 4841117 941303..941956 1 NC_009048.1 predicted protein 941956 4841117 PICST_85528 Pichia stipitis CBS 6054 predicted protein XP_001386600.2 941303 D 322104 CDS PICST_33987 126140158 4841118 942466..943764 1 NC_009048.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 943764 4841118 PICST_33987 Pichia stipitis CBS 6054 predicted protein XP_001386601.1 942466 D 322104 CDS PICST_64492 150866866 4841022 947009..>948154 1 NC_009048.1 hyphally regulated cell wall protein >948154 HYR5.5 4841022 HYR5.5 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001386602.2 947009 D 322104 CDS PICST_50278 150866981 4841023 complement(<962252..963448) 1 NC_009048.1 hyphally regulated cell wall protein 963448 HYR5.4 4841023 HYR5.4 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001386767.2 <962252 R 322104 CDS PICST_64182 126140162 4841021 join(967348..967553,967605..968198,968241..969084) 1 NC_009048.1 putative ion transporter 969084 HOL32 4841021 HOL32 Pichia stipitis CBS 6054 putative ion transporter XP_001386603.1 967348 D 322104 CDS PICST_27987 126273507 4850782 1841..8191 1 NC_009068.1 Vesicle coat complex AP-3, beta subunit Intracellular trafficking, secretion, and vesicular transport; vesicle coat complex AP-3 8191 VCC3.1 4850782 VCC3.1 Pichia stipitis CBS 6054 vesicle coat complex AP-3 XP_001387243.1 1841 D 322104 CDS PICST_27988 126273508 4850780 10549..14520 1 NC_009068.1 vesicle coat complex AP-3 14520 VCC3.5 4850780 VCC3.5 Pichia stipitis CBS 6054 vesicle coat complex AP-3 XP_001387244.1 10549 D 322104 CDS PICST_27989 126273509 4850777 14883..16892 1 NC_009068.1 ATP-dependent DNA helicase 16892 ADD2.4 4850777 ADD2.4 Pichia stipitis CBS 6054 ATP-dependent DNA helicase XP_001387245.1 14883 D 322104 CDS PICST_64741 126273510 4850775 34743..36395 1 NC_009068.1 Sugar UpTake (tentative) with sequence similarity to similar; go_component: integral to membrane; go_function: transporter activity; go_process: transport; sugar transporter protein 36395 SUT4 4850775 SUT4 Pichia stipitis CBS 6054 sugar transporter protein XP_001387246.1 34743 D 322104 CDS PICST_39044 126273512 4850778 complement(37424..>38983) 1 NC_009068.1 go_component: membrane; go_process: transport; dicarboxylic amino acid permease >38983 DIP5.1 4850778 DIP5.1 Pichia stipitis CBS 6054 dicarboxylic amino acid permease XP_001387660.1 37424 R 322104 CDS PICST_74665 126273514 4850781 40983..42071 1 NC_009068.1 go_function: nucleotidyltransferase activity; go_process: biosynthesis; Mannose-1-phosphate guanyltransferase (ATP-mannose-1-phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (CASRB1) 42071 MPG1 4850781 MPG1 Pichia stipitis CBS 6054 Mannose-1-phosphate guanyltransferase (ATP-mannose-1-phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (CASRB1) XP_001387247.1 40983 D 322104 CDS PICST_51763 126273515 4850779 complement(42570..>43235) 1 NC_009068.1 predicted protein >43235 4850779 PICST_51763 Pichia stipitis CBS 6054 predicted protein XP_001387661.1 42570 R 322104 CDS PICST_51621 126273520 4850776 complement(join(43659..43925,43944..44593,44621..44709,44728..>44840)) 1 NC_009068.1 predicted protein 44709 4850776 PICST_51621 Pichia stipitis CBS 6054 predicted protein XP_001387662.1 43659 R 322104 CDS PICST_38766 126273521 4850783 complement(45009..46010) 1 NC_009068.1 predicted protein 46010 4850783 PICST_38766 Pichia stipitis CBS 6054 predicted protein XP_001387663.1 45009 R 322104 CDS PICST_27997 126273522 4850784 46276..47814 1 NC_009068.1 predicted protein 47814 4850784 PICST_27997 Pichia stipitis CBS 6054 predicted protein XP_001387248.1 46276 D 322104 CDS PICST_38239 126273523 4850785 complement(47918..48190) 1 NC_009068.1 go_component: mitochondrial inner membrane; go_function: protein translocase activity; go_process: protein-mitochondrial targeting; predicted protein 48190 4850785 PICST_38239 Pichia stipitis CBS 6054 predicted protein XP_001387664.1 47918 R 322104 CDS PICST_37943 126273525 4850786 48534..49400 1 NC_009068.1 predicted protein 49400 4850786 PICST_37943 Pichia stipitis CBS 6054 predicted protein XP_001387249.1 48534 D 322104 CDS PICST_28000 126273527 4850787 49800..52376 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Fungal-specific transcription factor 52376 FST8 4850787 FST8 Pichia stipitis CBS 6054 Fungal-specific transcription factor XP_001387250.1 49800 D 322104 CDS PICST_33997 126273528 4850788 join(53495..53626,53675..55162) 1 NC_009068.1 allantoate permease 55162 DAL11 4850788 DAL11 Pichia stipitis CBS 6054 allantoate permease XP_001387251.1 53495 D 322104 CDS PICST_51159 126273529 4850789 complement(join(55663..56386,56420..57159)) 1 NC_009068.1 predicted protein 57159 4850789 PICST_51159 Pichia stipitis CBS 6054 predicted protein XP_001387665.1 55663 R 322104 CDS PICST_28003 126273530 4850790 complement(join(59667..59776,59815..60989,61346..61412,61450..61528)) 1 NC_009068.1 Putative RNA polymerase integrase domain; putative RNA-directed DNA polymerase 61528 POL5.8 4850790 POL5.8 Pichia stipitis CBS 6054 putative RNA-directed DNA polymerase XP_001387666.1 59667 R 322104 CDS PICST_28004 126273533 4850791 complement(62072..63316) 1 NC_009068.1 hypothetical multi-copy protein; occurs in various forms throughout the genome; might be associated with repetetive element.; hypothetical multi-copy protein 63316 HMC5 4850791 HMC5 Pichia stipitis CBS 6054 hypothetical multi-copy protein XP_001387667.1 62072 R 322104 CDS PICST_51462 126273534 4850792 complement(63966..64964) 1 NC_009068.1 go_function: phosphoric ester hydrolase activity; go_process: carbohydrate metabolism; Fructose-1,6-bisphosphatase 64964 FBP1 4850792 FBP1 Pichia stipitis CBS 6054 Fructose-1,6-bisphosphatase XP_001387668.1 63966 R 322104 CDS PICST_52240 126273535 4850793 complement(join(67071..67372,67408..67428,67652..67700)) 1 NC_009068.1 predicted protein 67700 4850793 PICST_52240 Pichia stipitis CBS 6054 predicted protein XP_001387669.1 67071 R 322104 CDS PICST_68832 126273536 4850794 69533..70969 1 NC_009068.1 go_component: membrane; go_function: protein translocase activity; go_process: protein secretion; Protein transport protein SEC61 alpha subunit 70969 SEC61 4850794 SEC61 Pichia stipitis CBS 6054 Protein transport protein SEC61 alpha subunit XP_001387252.1 69533 D 322104 CDS PICST_37870 126273537 4850795 <71759..72295 1 NC_009068.1 predicted protein 72295 4850795 PICST_37870 Pichia stipitis CBS 6054 predicted protein XP_001387253.1 <71759 D 322104 CDS PICST_64745 126273539 4850796 complement(72609..73688) 1 NC_009068.1 transcription factor 73688 STD1 4850796 STD1 Pichia stipitis CBS 6054 transcription factor XP_001387670.1 72609 R 322104 CDS PICST_80670 126273541 4850797 join(76052..76257,76282..79687) 1 NC_009068.1 nuclear pore protein 79687 NUP159 4850797 NUP159 Pichia stipitis CBS 6054 nuclear pore protein XP_001387254.1 76052 D 322104 CDS PICST_38202 126273542 4850798 82511..83476 1 NC_009068.1 epoxide hydrolase, soluble (sEH) 83476 SEH1 4850798 SEH1 Pichia stipitis CBS 6054 epoxide hydrolase, soluble (sEH) XP_001387255.1 82511 D 322104 CDS PICST_52144 126273543 4850799 complement(83529..85238) 1 NC_009068.1 some similarity to part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) 85238 UTP9 4850799 UTP9 Pichia stipitis CBS 6054 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) XP_001387671.1 83529 R 322104 CDS PICST_66227 126273547 4850800 complement(89463..90920) 1 NC_009068.1 hypothetical nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains 90920 EFG1 4850800 EFG1 Pichia stipitis CBS 6054 Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains XP_001387672.1 89463 R 322104 CDS PICST_66228 126273548 4850801 complement(96214..97809) 1 NC_009068.1 go_process: mRNA capping; mRNA cap methyltransferase 97809 ABD1 4850801 ABD1 Pichia stipitis CBS 6054 mRNA cap methyltransferase XP_001387673.1 96214 R 322104 CDS PICST_38512 126273549 4850802 complement(98185..98982) 1 NC_009068.1 dihydrofolate reductase 98982 FSH1 4850802 FSH1 Pichia stipitis CBS 6054 dihydrofolate reductase XP_001387674.1 98185 R 322104 CDS PICST_38498 126273550 4850803 100244..100642 1 NC_009068.1 predicted protein 100642 4850803 PICST_38498 Pichia stipitis CBS 6054 predicted protein XP_001387256.1 100244 D 322104 CDS PICST_38196 126273553 4850804 complement(<101211..105938) 1 NC_009068.1 regulator of histone transcription 105938 HIR3 4850804 HIR3 Pichia stipitis CBS 6054 regulator of histone transcription XP_001387675.1 <101211 R 322104 CDS PICST_34004 126273554 4850805 complement(107320..108105) 1 NC_009068.1 predicted protein 108105 4850805 PICST_34004 Pichia stipitis CBS 6054 predicted protein XP_001387676.1 107320 R 322104 CDS PICST_24555 126273555 4850806 complement(<109704..>111488) 1 NC_009068.1 go_component: nucleus; go_function: damaged DNA binding; go_process: nucleotide-excision repair; predicted protein >111488 4850806 PICST_24555 Pichia stipitis CBS 6054 predicted protein XP_001387677.1 <109704 R 322104 CDS PICST_52398 126273556 4850807 <112288..114441 1 NC_009068.1 predicted protein 114441 4850807 PICST_52398 Pichia stipitis CBS 6054 predicted protein XP_001387257.1 <112288 D 322104 CDS PICST_74587 126273557 4850808 115009..116487 1 NC_009068.1 go_function: catalytic activity; Fumarase converts fumaric acid to L-malic acid in the TCA cycle 116487 FUM2 4850808 FUM2 Pichia stipitis CBS 6054 Fumarase converts fumaric acid to L-malic acid in the TCA cycle XP_001387258.1 115009 D 322104 CDS PICST_34006 126273560 4850809 join(117006..117663,117739..118226) 1 NC_009068.1 predicted protein 118226 4850809 PICST_34006 Pichia stipitis CBS 6054 predicted protein XP_001387259.1 117006 D 322104 CDS PICST_38732 126273562 4850810 118725..120338 1 NC_009068.1 go_function: transferase activity, transferring pentosyl groups; go_process: regulation of translation; predicted protein 120338 4850810 PICST_38732 Pichia stipitis CBS 6054 predicted protein XP_001387260.1 118725 D 322104 CDS PICST_80613 126273563 4850811 complement(join(120969..122085,122107..123950,123963..124281,124330..124611,124630..124763)) 1 NC_009068.1 TATA-binding protein-interacting protein 124763 TIP120 4850811 TIP120 Pichia stipitis CBS 6054 TATA-binding protein-interacting protein XP_001387678.1 120969 R 322104 CDS PICST_51433 126273564 4850812 complement(<125410..126066) 1 NC_009068.1 predicted protein 126066 4850812 PICST_51433 Pichia stipitis CBS 6054 predicted protein XP_001387679.1 <125410 R 322104 CDS PICST_28027 126273565 4850813 complement(join(126494..127606,127951..128043)) 1 NC_009068.1 go_function: metallopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 128043 4850813 PICST_28027 Pichia stipitis CBS 6054 predicted protein XP_001387680.1 126494 R 322104 CDS PICST_28028 126273566 4850814 complement(128286..128633) 1 NC_009068.1 predicted protein 128633 4850814 PICST_28028 Pichia stipitis CBS 6054 predicted protein XP_001387681.1 128286 R 322104 CDS PICST_34008 126273567 4850815 131816..132658 1 NC_009068.1 predicted protein 132658 4850815 PICST_34008 Pichia stipitis CBS 6054 predicted protein XP_001387261.1 131816 D 322104 CDS PICST_85888 126273570 4850816 complement(132841..134850) 1 NC_009068.1 transcription factor which mediates glucose repression 134850 SSN7 4850816 SSN7 Pichia stipitis CBS 6054 transcription factor which mediates glucose repression XP_001387682.1 132841 R 322104 CDS PICST_28031 126273572 4850817 141099..143129 1 NC_009068.1 predicted protein 143129 4850817 PICST_28031 Pichia stipitis CBS 6054 predicted protein XP_001387262.1 141099 D 322104 CDS PICST_28032 126273573 4850818 145165..146502 1 NC_009068.1 predicted protein 146502 4850818 PICST_28032 Pichia stipitis CBS 6054 predicted protein XP_001387263.1 145165 D 322104 CDS PICST_52647 126273575 4850819 <147751..149220 1 NC_009068.1 go_process: electron transport; mitochondrial lactate ferricytochrome c oxidoreductase 149220 DLD4 4850819 DLD4 Pichia stipitis CBS 6054 mitochondrial lactate ferricytochrome c oxidoreductase XP_001387264.1 <147751 D 322104 CDS PICST_66232 126273576 4850820 151610..153097 1 NC_009068.1 hypothetical protein 153097 4850820 PICST_66232 Pichia stipitis CBS 6054 hypothetical protein XP_001387265.1 151610 D 322104 CDS PICST_39062 126273577 4850821 <153813..154163 1 NC_009068.1 Putative RING-H2 finger protein 154163 ATL2 4850821 ATL2 Pichia stipitis CBS 6054 Putative RING-H2 finger protein XP_001387266.1 <153813 D 322104 CDS PICST_38380 126273578 4850822 complement(154403..155188) 1 NC_009068.1 Mitochondrial ribosomal protein S10 155188 RSM10 4850822 RSM10 Pichia stipitis CBS 6054 Mitochondrial ribosomal protein S10 XP_001387683.1 154403 R 322104 CDS PICST_38384 126273581 4850823 155645..156550 1 NC_009068.1 tRNA methyltransferase 156550 TRM7 4850823 TRM7 Pichia stipitis CBS 6054 tRNA methyltransferase XP_001387267.1 155645 D 322104 CDS PICST_74513 126273587 4850824 complement(156719..158500) 1 NC_009068.1 go_component: cytoplasm; go_function: tRNA ligase activity; ATP binding; nucleic acid binding; go_process: tRNA aminoacylation for protein translation; lysyl-tRNA synthetase 158500 KRS1 4850824 KRS1 Pichia stipitis CBS 6054 lysyl-tRNA synthetase XP_001387684.1 156719 R 322104 CDS PICST_80736 126273591 4850825 join(159603..159680,159734..159768,159822..159828,160078..160129,160198..160266,160325..160506) 1 NC_009068.1 predicted protein 160506 4850825 PICST_80736 Pichia stipitis CBS 6054 predicted protein XP_001387268.1 159603 D 322104 CDS PICST_37804 126273596 4850826 join(161012..161164,161819..164287) 1 NC_009068.1 predicted protein 164287 4850826 PICST_37804 Pichia stipitis CBS 6054 predicted protein XP_001387269.1 161012 D 322104 CDS PICST_66235 126273600 4850827 complement(164329..166452) 1 NC_009068.1 predicted protein 166452 4850827 PICST_66235 Pichia stipitis CBS 6054 predicted protein XP_001387685.1 164329 R 322104 CDS PICST_80322 126273604 4850828 168117..169307 1 NC_009068.1 alpha subunit of pyruvate dehydrogenase (E1 alpha) [KO:K00160]; go_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor; go_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor; go_process: metabolism; go_process: metabolism; alpha subunit of pyruvate dehydrogenase 169307 PDA1 4850828 PDA1 Pichia stipitis CBS 6054 alpha subunit of pyruvate dehydrogenase XP_001387270.1 168117 D 322104 CDS PICST_51353 126273607 4850829 join(169603..174958,175001..175980) 1 NC_009068.1 RNA helicase-related protein required for pre-mRNA splicing Snurp 246 kDa protein (Snurp = Small nuclear ribonucleoprotein particle); go_component: nucleus; go_function: nucleic acid binding; helicase activity; ATP binding; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; RNA helicase-related protein required for pre-mRNA splicing 175980 BRR2 4850829 BRR2 Pichia stipitis CBS 6054 RNA helicase-related protein required for pre-mRNA splicing XP_001387271.1 169603 D 322104 CDS PICST_34016 126273611 4850830 176582..177691 1 NC_009068.1 go_function: transferase activity, transferring glycosyl groups; go_process: metabolism; anthranilate phosphoribosyltransferase 177691 TRP4 4850830 TRP4 Pichia stipitis CBS 6054 anthranilate phosphoribosyltransferase XP_001387272.1 176582 D 322104 CDS PICST_28046 126273616 4850831 complement(181411..182124) 1 NC_009068.1 predicted protein 182124 4850831 PICST_28046 Pichia stipitis CBS 6054 predicted protein XP_001387686.1 181411 R 322104 CDS PICST_66237 126273619 4850832 complement(182427..186773) 1 NC_009068.1 RNA polymerase III large subunit [KO:K00960]; go_component: nucleus; go_component: nucleus; go_function: DNA binding; DNA-directed RNA polymerase activity; go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; go_process: transcription; DNA-directed RNA polymerase III subunit C1 (RPO31) 186773 RPO31 4850832 RPO31 Pichia stipitis CBS 6054 DNA-directed RNA polymerase III subunit C1 (RPO31) XP_001387687.1 182427 R 322104 CDS PICST_34019 126273624 4850833 187206..187430 1 NC_009068.1 predicted protein 187430 4850833 PICST_34019 Pichia stipitis CBS 6054 predicted protein XP_001387273.1 187206 D 322104 CDS PICST_52887 126273629 4850834 complement(187966..189249) 1 NC_009068.1 go_function: ATP binding; 26S proteasome regulatory subunit 189249 RPT5 4850834 RPT5 Pichia stipitis CBS 6054 26S proteasome regulatory subunit XP_001387688.1 187966 R 322104 CDS PICST_39066 126273634 4850835 join(189896..189977,190043..190079,190130..190244,190372..190593) 1 NC_009068.1 go_function: zinc ion binding; hydrolase activity; predicted protein 190593 4850835 PICST_39066 Pichia stipitis CBS 6054 predicted protein XP_001387274.1 189896 D 322104 CDS PICST_64750 126273637 4850836 191061..192173 1 NC_009068.1 go_function: metalloexopeptidase activity; go_process: proteolysis and peptidolysis; methionine aminopeptidase 192173 MAP1 4850836 MAP1 Pichia stipitis CBS 6054 methionine aminopeptidase XP_001387275.1 191061 D 322104 CDS PICST_37566 126273642 4850837 complement(192398..193231) 1 NC_009068.1 predicted protein 193231 4850837 PICST_37566 Pichia stipitis CBS 6054 predicted protein XP_001387689.1 192398 R 322104 CDS PICST_74533 126273647 4850838 194310..195986 1 NC_009068.1 cytoplasmic chaperonin of the Cct ring complex 195986 CCT6 4850838 CCT6 Pichia stipitis CBS 6054 cytoplasmic chaperonin of the Cct ring complex XP_001387276.1 194310 D 322104 CDS PICST_52201 126273652 4850839 196817..198754 1 NC_009068.1 t-SNARE- interacting protein that functions in ER-to-Golgi traffic; go_function: protein transporter activity; go_process: protein secretion; Vesicle trafficking protein Sly1 (Sec1 family) 198754 SLY1 4850839 SLY1 Pichia stipitis CBS 6054 Vesicle trafficking protein Sly1 (Sec1 family) XP_001387277.1 196817 D 322104 CDS PICST_37582 126273655 4850840 complement(198994..200373) 1 NC_009068.1 TIP49a homolog; 3' to 5' DNA/RNA helicase involved in ribosomal RNA processing by similarity to S. cerevisiae RVB1; RUVB-like protein 200373 RBV1 4850840 RBV1 Pichia stipitis CBS 6054 RUVB-like protein XP_001387690.1 198994 R 322104 CDS PICST_68965 126273660 4850841 complement(200827..201651) 1 NC_009068.1 go_function: ATP binding; molecular function unknown; putative transcription factor Fet5 201651 FET5 4850841 FET5 Pichia stipitis CBS 6054 putative transcription factor Fet5 XP_001387691.1 200827 R 322104 CDS PICST_37673 126273667 4850842 complement(201848..>203743) 1 NC_009068.1 go_component: membrane; go_function: cation transporter activity; go_process: cation transport; Meiotic Sister-Chromatid recombination transmembrane protein (putative) showing some protein similarity to Zrc1p and Cot1p >203743 MSC2 4850842 MSC2 Pichia stipitis CBS 6054 Meiotic Sister-Chromatid recombination transmembrane protein (putative) showing some protein similarity to Zrc1p and Cot1p XP_001387692.1 201848 R 322104 CDS PICST_68764 126273672 4850843 complement(204499..206421) 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; mitochondrial glycerol-3-phosphate dehydrogenase 206421 GUT2 4850843 GUT2 Pichia stipitis CBS 6054 mitochondrial glycerol-3-phosphate dehydrogenase XP_001387693.1 204499 R 322104 CDS PICST_34027 126273677 4850844 join(209035..209196,209239..209614,209666..210654) 1 NC_009068.1 allantoate permease 210654 DAL5 4850844 DAL5 Pichia stipitis CBS 6054 allantoate permease XP_001387278.1 209035 D 322104 CDS PICST_80075 126273682 4850845 join(211277..211472,211518..212069,212121..212995,213026..213211) 1 NC_009068.1 secretion lowering protein 213211 SEL1 4850845 SEL1 Pichia stipitis CBS 6054 secretion lowering protein XP_001387279.1 211277 D 322104 CDS PICST_74592 126273687 4850846 join(214098..214821,214834..215552) 1 NC_009068.1 universal stress protein (USP) family protein possible involvement in nucleo-mitochondrial control of maltose, galactose and raffinose utilization (IMP2); go_process: response to stress; universal stress protein (USP) family protein possible involvement in nucleo-mitochondrial control of maltose, galactose and raffinose utilization 215552 USP1 4850846 USP1 Pichia stipitis CBS 6054 universal stress protein (USP) family protein possible involvement in nucleo-mitochondrial control of maltose, galactose and raffinose utilization XP_001387280.1 214098 D 322104 CDS PICST_80065 126273692 4850847 complement(218492..219469) 1 NC_009068.1 similar to mammalian fibrillarin; go_component: nucleus; go_function: RNA binding; go_process: rRNA processing; U3 snoRNP protein 219469 NOP1 4850847 NOP1 Pichia stipitis CBS 6054 U3 snoRNP protein XP_001387694.1 218492 R 322104 CDS PICST_80295 126273697 4850848 221072..222253 1 NC_009068.1 similar to solute carrier family 35 (UDP-galactose transporter; putative UDP-galactose transporter 222253 SLC35 4850848 SLC35 Pichia stipitis CBS 6054 putative UDP-galactose transporter XP_001387281.1 221072 D 322104 CDS PICST_37571 126273701 4850849 <222563..223006 1 NC_009068.1 putatively involved in ubiquitin-mediated proteolysis; Proteasome maturation factor 223006 UMP1 4850849 UMP1 Pichia stipitis CBS 6054 Proteasome maturation factor XP_001387282.1 <222563 D 322104 CDS PICST_66248 126273706 4850850 223638..226418 1 NC_009068.1 kinesin-like protein 226418 SMY2 4850850 SMY2 Pichia stipitis CBS 6054 kinesin-like protein XP_001387283.1 223638 D 322104 CDS PICST_51091 126273711 4850851 <226796..228772 1 NC_009068.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; saccharolysin (oligopeptidase) 228772 PRD1.1 4850851 PRD1.1 Pichia stipitis CBS 6054 saccharolysin (oligopeptidase) XP_001387284.1 <226796 D 322104 CDS PICST_5140 126273716 4850852 complement(join(<228908..229962,230116..230308)) 1 NC_009068.1 predicted protein 230308 4850852 PICST_5140 Pichia stipitis CBS 6054 predicted protein XP_001387695.1 <228908 R 322104 CDS PICST_80446 126273719 4850853 complement(join(231552..232863,232951..233389,233510..233813)) 1 NC_009068.1 go_process: intracellular signaling cascade; protein involved in Golgi retention and vacuolar sorting 233813 VPS5 4850853 VPS5 Pichia stipitis CBS 6054 protein involved in Golgi retention and vacuolar sorting XP_001387696.1 231552 R 322104 CDS PICST_86346 126273724 4850854 236364..237221 1 NC_009068.1 peroxisomal 2,4- dienoyl-CoA reductase and sorbitol utilization protein [KO:K00079]; go_function: oxidoreductase activity; go_function: oxidoreductase activity; go_process: metabolism; go_process: metabolism; peroxisomal 2,4- dienoyl-CoA reductase and sorbitol utilization protein 237221 SOU2 4850854 SOU2 Pichia stipitis CBS 6054 peroxisomal 2,4- dienoyl-CoA reductase and sorbitol utilization protein XP_001387285.1 236364 D 322104 CDS PICST_66251 126273727 4850855 238331..240256 1 NC_009068.1 succinate dehydrogenase (SDH3) [KO:K00234]; go_function: oxidoreductase activity; go_function: oxidoreductase activity; go_process: electron transport; go_process: electron transport; succinate dehydrogenase 240256 SDH1 4850855 SDH1 Pichia stipitis CBS 6054 succinate dehydrogenase XP_001387286.1 238331 D 322104 CDS PICST_38255 126273732 4850856 241361..242209 1 NC_009068.1 peroxisomal 2,4- dienoyl-CoA reductase, and sorbitol utilization protein [KO:K00079]; go_function: oxidoreductase activity; go_function: oxidoreductase activity; go_process: metabolism; go_process: metabolism; peroxisomal 2,4- dienoyl-CoA reductase, and sorbitol utilization protein 242209 SOU1 4850856 SOU1 Pichia stipitis CBS 6054 peroxisomal 2,4- dienoyl-CoA reductase, and sorbitol utilization protein XP_001387287.1 241361 D 322104 CDS PICST_80851 126273735 4850857 complement(join(244179..244297,244340..245015)) 1 NC_009068.1 go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar ATPase V1 domain subunit D 245015 VMA8 4850857 VMA8 Pichia stipitis CBS 6054 vacuolar ATPase V1 domain subunit D XP_001387697.1 244179 R 322104 CDS PICST_51927 126273738 4850858 join(251901..252467,252525..254522) 1 NC_009068.1 predicted protein 254522 4850858 PICST_51927 Pichia stipitis CBS 6054 predicted protein XP_001387288.1 251901 D 322104 CDS PICST_51421 126273745 4850859 complement(join(254735..256351,256367..256511,256575..256879,256997..257136,257164..257446,257489..257672,257742..257821)) 1 NC_009068.1 hypothetical protein 257821 4850859 PICST_51421 Pichia stipitis CBS 6054 hypothetical protein XP_001387698.1 254735 R 322104 CDS PICST_86016 126273750 4850860 complement(259928..261406) 1 NC_009068.1 ATPase 261406 AFG1 4850860 AFG1 Pichia stipitis CBS 6054 ATPase XP_001387699.1 259928 R 322104 CDS PICST_80159 126273755 4850861 262416..262811 1 NC_009068.1 Ino eighty subunit 6 262811 IES6 4850861 IES6 Pichia stipitis CBS 6054 Ino eighty subunit 6 XP_001387289.1 262416 D 322104 CDS PICST_28080 126273760 4850862 complement(263180..263869) 1 NC_009068.1 predicted protein 263869 4850862 PICST_28080 Pichia stipitis CBS 6054 predicted protein XP_001387700.1 263180 R 322104 CDS PICST_34041 126273766 4850863 265588..266145 1 NC_009068.1 predicted protein 266145 4850863 PICST_34041 Pichia stipitis CBS 6054 predicted protein XP_001387290.1 265588 D 322104 CDS PICST_38082 126273769 4850864 complement(267039..268127) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Extracellular signal-regulated kinase 1 (ERK1) (MAP kinase 1) (MAPK 1) 268127 ERK1 4850864 ERK1 Pichia stipitis CBS 6054 Extracellular signal-regulated kinase 1 (ERK1) (MAP kinase 1) (MAPK 1) XP_001387701.1 267039 R 322104 CDS PICST_34043 126273772 4850865 complement(270010..271551) 1 NC_009068.1 go_component: alpha DNA polymerase:primase complex; go_function: DNA primase activity; go_process: DNA replication, synthesis of RNA primer; DNA-directed DNA polymerase alpha, DNA primase subunit 271551 PRI2 4850865 PRI2 Pichia stipitis CBS 6054 DNA-directed DNA polymerase alpha, DNA primase subunit XP_001387702.1 270010 R 322104 CDS PICST_85971 126273777 4850866 272095..275175 1 NC_009068.1 global regulator of transcription 275175 SPT16 4850866 SPT16 Pichia stipitis CBS 6054 global regulator of transcription XP_001387291.1 272095 D 322104 CDS PICST_86597 126273782 4850867 complement(275396..276340) 1 NC_009068.1 predicted protein 276340 4850867 PICST_86597 Pichia stipitis CBS 6054 predicted protein XP_001387703.1 275396 R 322104 CDS PICST_34046 126273787 4850868 complement(277509..279281) 1 NC_009068.1 go_component: membrane; go_function: transporter activity; go_process: transport; Uric acid-xanthine permease (UAPA transporter) 279281 UAP3 4850868 UAP3 Pichia stipitis CBS 6054 Uric acid-xanthine permease (UAPA transporter) XP_001387704.1 277509 R 322104 CDS PICST_39239 126273792 4850869 join(281957..282832,283208..>285064) 1 NC_009068.1 protein involved in mannose metabolism and cell wall synthesis 282832 MNN4.2 4850869 MNN4.2 Pichia stipitis CBS 6054 protein involved in mannose metabolism and cell wall synthesis XP_001387292.1 281957 D 322104 CDS PICST_86443 126273795 4850870 complement(285575..287287) 1 NC_009068.1 pyruvate decarboxylase [KO:K01568]; pyruvate decarboxylase 287287 PDC2 4850870 PDC2 Pichia stipitis CBS 6054 pyruvate decarboxylase XP_001387705.1 285575 R 322104 CDS PICST_52442 126273800 4850871 <289283..289633 1 NC_009068.1 centromere-binding kinetochore protein 289633 CBF1 4850871 CBF1 Pichia stipitis CBS 6054 centromere-binding kinetochore protein XP_001387293.1 <289283 D 322104 CDS PICST_51727 126273803 4850872 290152..290997 1 NC_009068.1 predicted protein 290997 4850872 PICST_51727 Pichia stipitis CBS 6054 predicted protein XP_001387294.1 290152 D 322104 CDS PICST_74317 126273808 4850873 join(291515..291603,291634..295864) 1 NC_009068.1 go_function: DNA binding; DNA topoisomerase (ATP-hydrolyzing) activity; ATP binding; go_process: DNA metabolism; DNA topological change; DNA topoisomerase II 295864 TOP2 4850873 TOP2 Pichia stipitis CBS 6054 DNA topoisomerase II XP_001387295.1 291515 D 322104 CDS PICST_66259 126273813 4850874 297548..298249 1 NC_009068.1 predicted protein 298249 4850874 PICST_66259 Pichia stipitis CBS 6054 predicted protein XP_001387296.1 297548 D 322104 CDS PICST_28093 126273817 4850875 complement(298557..299039) 1 NC_009068.1 predicted protein 299039 4850875 PICST_28093 Pichia stipitis CBS 6054 predicted protein XP_001387706.1 298557 R 322104 CDS PICST_28094 126273822 4850876 complement(299893..302355) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; activator of transcription of nitrogen-regulated genes 302355 GAT1 4850876 GAT1 Pichia stipitis CBS 6054 activator of transcription of nitrogen-regulated genes XP_001387707.1 299893 R 322104 CDS PICST_17616 126273827 4850877 join(<307132..308103,309397..309412,310439..310648,310712..310789,311090..311197,311423..>311502) 1 NC_009068.1 hyphally regulated cell wall protein 311197 HYR5.2 4850877 HYR5.2 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001387297.1 <307132 D 322104 CDS PICST_80729 126273832 4850878 312378..314123 1 NC_009068.1 L-lactate dehydrogenase [Cytochrome]; L-lactate ferricytochrome C oxidoreductase; L-LCR; go_function: oxidoreductase activity; go_process: electron transport; cytochrome b2, mitochondrial precursor 314123 CYB2 4850878 CYB2 Pichia stipitis CBS 6054 cytochrome b2, mitochondrial precursor XP_001387298.1 312378 D 322104 CDS PICST_28097 126273835 4850879 316312..317199 1 NC_009068.1 Suppressor of mutant AC40 subunit of RNA polymerase I and III (high serine) 317199 SRP40.2 4850879 SRP40.2 Pichia stipitis CBS 6054 Suppressor of mutant AC40 subunit of RNA polymerase I and III (high serine) XP_001387299.1 316312 D 322104 CDS PICST_86494 126273840 4850880 complement(join(317359..317886,317932..318516,318622..318975)) 1 NC_009068.1 go_function: molecular function unknown; predicted protein 318975 4850880 PICST_86494 Pichia stipitis CBS 6054 predicted protein XP_001387708.1 317359 R 322104 CDS PICST_51175 126273841 4850881 complement(join(319379..319593,319624..321619,321983..322773,322837..323362,323396..323988,324025..324232)) 1 NC_009068.1 hypothetical PHD type zinc finger protein with BAH domain (YGN1); go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; hypothetical PHD type zinc finger protein with BAH domain-containing protein 324232 SNT2 4850881 SNT2 Pichia stipitis CBS 6054 hypothetical PHD type zinc finger protein with BAH domain-containing protein XP_001387709.1 319379 R 322104 CDS PICST_52660 126273842 4850882 complement(join(324943..325115,325131..325671)) 1 NC_009068.1 predicted protein 325671 4850882 PICST_52660 Pichia stipitis CBS 6054 predicted protein XP_001387710.1 324943 R 322104 CDS PICST_34053 126273843 4850883 join(326266..327428,328291..328295,328475..328500) 1 NC_009068.1 go_function: mRNA guanylyltransferase activity; go_process: mRNA capping; mRNA processing; mRNA capping enzyme alpha subunit and guanylyltransferase 328500 CEG1 4850883 CEG1 Pichia stipitis CBS 6054 mRNA capping enzyme alpha subunit and guanylyltransferase XP_001387300.1 326266 D 322104 CDS PICST_28102 126273844 4850884 complement(<328667..329242) 1 NC_009068.1 predicted protein 329242 4850884 PICST_28102 Pichia stipitis CBS 6054 predicted protein XP_001387711.1 <328667 R 322104 CDS PICST_66263 126273845 4850885 331355..332884 1 NC_009068.1 flavin-containing monooxygenase 332884 FMO1 4850885 FMO1 Pichia stipitis CBS 6054 flavin-containing monooxygenase XP_001387301.1 331355 D 322104 CDS PICST_37933 126273846 4850886 complement(333024..333413) 1 NC_009068.1 predicted protein 333413 4850886 PICST_37933 Pichia stipitis CBS 6054 predicted protein XP_001387712.1 333024 R 322104 CDS PICST_86192 126273847 4850887 334848..336062 1 NC_009068.1 putative lysine acetyltransferase (Lysine N(6)-acetyltransferase) (LAT); go_function: N-acetyltransferase activity; Lysine acetyltransferase (Lysine N(6)-acetyltransferase) (LAT) 336062 LYC1 4850887 LYC1 Pichia stipitis CBS 6054 Lysine acetyltransferase (Lysine N(6)-acetyltransferase) (LAT) XP_001387302.1 334848 D 322104 CDS PICST_38592 126273848 4850888 336289..337572 1 NC_009068.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) (bacterial); go_function: adenosylmethionine-8-amino-7-oxononanoate transaminase activity; go_process: biotin biosynthesis; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) 337572 BIO3 4850888 BIO3 Pichia stipitis CBS 6054 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) XP_001387303.1 336289 D 322104 CDS PICST_51795 126273849 4850889 complement(337604..>339097) 1 NC_009068.1 Suppressor of Sulfoxyde Ethionine resistance >339097 SEO3 4850889 SEO3 Pichia stipitis CBS 6054 Suppressor of Sulfoxyde Ethionine resistance XP_001387713.1 337604 R 322104 CDS PICST_74895 126273850 4850890 340349..>343783 1 NC_009068.1 targeting complex (TRAPP) component involved in ER to Golgi membrane traffic >343783 TRS130 4850890 TRS130 Pichia stipitis CBS 6054 targeting complex (TRAPP) component involved in ER to Golgi membrane traffic XP_001387304.1 340349 D 322104 CDS PICST_74586 126273851 4850891 join(344178..344571,344641..345629) 1 NC_009068.1 similar to E. coli DnaJ contains leucine zipper-like motif; DnaJ-like protein 345629 CAJ1 4850891 CAJ1 Pichia stipitis CBS 6054 DnaJ-like protein XP_001387305.1 344178 D 322104 CDS PICST_51359 126273852 4850892 346085..346354 1 NC_009068.1 go_component: mitochondrial inner membrane; go_function: oxidoreductase activity, acting on NADH or NADPH; go_process: electron transport; predicted protein 346354 4850892 PICST_51359 Pichia stipitis CBS 6054 predicted protein XP_001387306.1 346085 D 322104 CDS PICST_28111 126273853 4850893 complement(join(347837..348173,348297..349785,349876..350415,350552,350585..350789,350821..350825,351224..351421)) 1 NC_009068.1 N-terminus highly conserved; hypothetical protein with zinc finger domain; go_function: heme binding; Zn-finger protein 351421 4850893 PICST_28111 Pichia stipitis CBS 6054 Zn-finger protein XP_001387714.1 347837 R 322104 CDS PICST_11162 126273854 4850894 complement(<354771..>356240) 1 NC_009068.1 Golgi alpha-1,2- mannosyltransferase >356240 MNN24 4850894 MNN24 Pichia stipitis CBS 6054 Golgi alpha-1,2- mannosyltransferase XP_001387715.1 <354771 R 322104 CDS PICST_51290 126273855 4850895 join(<356987..357057,357203..357252,357839..357877,358002..>359440) 1 NC_009068.1 phosphoenolpyruvate-dependent sugar phosphotransferase; go_process: phosphoenolpyruvate-dependent sugar phosphotransferase system; Repressed in Hyphal Development 357877 RHD1 4850895 RHD1 Pichia stipitis CBS 6054 Repressed in Hyphal Development XP_001387307.1 <356987 D 322104 CDS PICST_86078 126273856 4850896 360432..365396 1 NC_009068.1 subunit of activation mediator subcomplex of RNA polymerase II holoenzyme 365396 SRB8 4850896 SRB8 Pichia stipitis CBS 6054 subunit of activation mediator subcomplex of RNA polymerase II holoenzyme XP_001387308.1 360432 D 322104 CDS PICST_64773 126273857 4850897 join(365980..366045,366196..368010) 1 NC_009068.1 go_component: membrane; go_function: cation transporter activity; go_process: cation transport; zinc-regulated gene 368010 ZRG17 4850897 ZRG17 Pichia stipitis CBS 6054 zinc-regulated gene XP_001387309.1 365980 D 322104 CDS PICST_52948 126273858 4850898 368437..369795 1 NC_009068.1 go_function: transaminase activity; acetylornithine aminotransferase 369795 ARG8 4850898 ARG8 Pichia stipitis CBS 6054 acetylornithine aminotransferase XP_001387310.1 368437 D 322104 CDS PICST_85954 126273859 4850899 join(370895..371795,371871..372100) 1 NC_009068.1 go_function: hydrolase activity; serine/threonine protein phosphatase type 2A 372100 PPG1 4850899 PPG1 Pichia stipitis CBS 6054 serine/threonine protein phosphatase type 2A XP_001387311.1 370895 D 322104 CDS PICST_28119 126273860 4850900 373685..377962 1 NC_009068.1 Suppressor of Sensor Kinase (SLN1) MAP kinase kinase kinase; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Suppressor of Sensor Kinase (SLN1) 377962 SSK2 4850900 SSK2 Pichia stipitis CBS 6054 Suppressor of Sensor Kinase (SLN1) XP_001387312.1 373685 D 322104 CDS PICST_75117 126273861 4850901 complement(378132..378509) 1 NC_009068.1 required for integrity of mitochondrial genome; 60S ribosomal protein required for integrity of mitrcondrial genome 378509 IMG2 4850901 IMG2 Pichia stipitis CBS 6054 60S ribosomal protein required for integrity of mitrcondrial genome XP_001387716.1 378132 R 322104 CDS PICST_80808 126273862 4850902 complement(join(378801..379502,379533..380167,380186..381257)) 1 NC_009068.1 SUppressor of ROK1; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; putative zinc finger protein 381257 SUR1 4850902 SUR1 Pichia stipitis CBS 6054 putative zinc finger protein XP_001387717.1 378801 R 322104 CDS PICST_28122 126273863 4850903 384411..386369 1 NC_009068.1 putative nuclear localization sequence binding protein appears to be degenerate; nuclear localization sequence binding protein 386369 NSR2 4850903 NSR2 Pichia stipitis CBS 6054 nuclear localization sequence binding protein XP_001387313.1 384411 D 322104 CDS PICST_80647 126273864 4850904 complement(join(386837..388561,388616..388714,388811..389220,389266..389473)) 1 NC_009068.1 topoisomerase II- associated protein 389473 PAT1 4850904 PAT1 Pichia stipitis CBS 6054 topoisomerase II- associated protein XP_001387718.1 386837 R 322104 CDS PICST_74393 126273865 4850905 complement(390040..392349) 1 NC_009068.1 go_function: catalytic activity; go_process: biosynthesis; para-aminobenzoate synthase, (PABA) 392349 ABZ1 4850905 ABZ1 Pichia stipitis CBS 6054 para-aminobenzoate synthase, (PABA) XP_001387719.1 390040 R 322104 CDS PICST_66275 126273866 4850906 400759..>401301 1 NC_009068.1 go_process: DNA repair; DNA recombination; protein involved in mitotic recombination and DNA repair >401301 RAD59 4850906 RAD59 Pichia stipitis CBS 6054 protein involved in mitotic recombination and DNA repair XP_001387314.1 400759 D 322104 CDS PICST_66276 126273868 4850907 complement(401411..405475) 1 NC_009068.1 RNA polymerase II Elongator subunit 405475 ELP1 4850907 ELP1 Pichia stipitis CBS 6054 RNA polymerase II Elongator subunit XP_001387720.1 401411 R 322104 CDS PICST_28128 126273869 4850908 complement(405717..406589) 1 NC_009068.1 predicted protein 406589 4850908 PICST_28128 Pichia stipitis CBS 6054 predicted protein XP_001387721.1 405717 R 322104 CDS PICST_52299 126273870 4850909 409298..411673 1 NC_009068.1 go_component: membrane; go_process: proton transport; V0 domain of vacuolar H+ATPase 411673 VPH1 4850909 VPH1 Pichia stipitis CBS 6054 V0 domain of vacuolar H+ATPase XP_001387315.1 409298 D 322104 CDS PICST_52773 126273871 4850910 411952..414126 1 NC_009068.1 Ca2+ release channel; ribosome export protein 414126 RIX1 4850910 RIX1 Pichia stipitis CBS 6054 ribosome export protein XP_001387316.1 411952 D 322104 CDS PICST_52111 126273872 4850911 join(414454..414705,414763..414825,414877..416961) 1 NC_009068.1 Anaphase-promoting complex (APC), subunit 5 416961 APC5 4850911 APC5 Pichia stipitis CBS 6054 Anaphase-promoting complex (APC), subunit 5 XP_001387317.1 414454 D 322104 CDS PICST_28132 126273873 4850912 complement(417208..417846) 1 NC_009068.1 go_process: phospholipid biosynthesis; phosphatidylinositol synthase 417846 PIS1 4850912 PIS1 Pichia stipitis CBS 6054 phosphatidylinositol synthase XP_001387722.1 417208 R 322104 CDS PICST_52834 126273874 4850913 join(420164..420431,420585..421873) 1 NC_009068.1 predicted protein 421873 4850913 PICST_52834 Pichia stipitis CBS 6054 predicted protein XP_001387318.1 420164 D 322104 CDS PICST_80553 126273875 4850914 join(422427..422660,422757..426569) 1 NC_009068.1 go_component: nuclear pore; go_process: transport; Nucleoporin NUP145 precursor (Nuclear pore protein NUP145) Contains: Nucleoporin NUP145N (N-NUP145) Nucleoporin NUP145C (C-NUP145) 426569 NUP145 4850914 NUP145 Pichia stipitis CBS 6054 Nucleoporin NUP145 precursor (Nuclear pore protein NUP145) Contains: Nucleoporin NUP145N (N-NUP145) Nucleoporin NUP145C (C-NUP145) XP_001387319.1 422427 D 322104 CDS PICST_38325 126273876 4850915 426903..427895 1 NC_009068.1 nuclear ATPase 427895 NEP35 4850915 NEP35 Pichia stipitis CBS 6054 nuclear ATPase XP_001387320.1 426903 D 322104 CDS PICST_28136 126273877 4850916 428375..429757 1 NC_009068.1 go_function: molecular function unknown; predicted protein 429757 4850916 PICST_28136 Pichia stipitis CBS 6054 predicted protein XP_001387321.1 428375 D 322104 CDS PICST_74520 126273878 4850917 complement(430219..431904) 1 NC_009068.1 vacuole memebrane protein required for vacuole inheritance 431904 VAC8 4850917 VAC8 Pichia stipitis CBS 6054 vacuole memebrane protein required for vacuole inheritance XP_001387723.1 430219 R 322104 CDS PICST_28139 126273879 4850918 complement(437339..440071) 1 NC_009068.1 hypothetical protein with thrombospondin repeats; Putative serine proteinase inhibitor (KU family) 440071 SPI1.3 4850918 SPI1.3 Pichia stipitis CBS 6054 Putative serine proteinase inhibitor (KU family) XP_001387724.1 437339 R 322104 CDS PICST_74319 126273880 4850919 441146..445726 1 NC_009068.1 Glycogen debranching enzyme the enzyme that debranches the glycogen having a glucanotranferase + 1-6amyloglucosidase activity; glycogen debranching enzyme 445726 GDB1 4850919 GDB1 Pichia stipitis CBS 6054 glycogen debranching enzyme XP_001387322.1 441146 D 322104 CDS PICST_80168 126273881 4850920 446987..448618 1 NC_009068.1 mitochondrial aldehyde dehydrogenase similarity to glyceraldehyde-3-phosphate dehydrogenase (GAPN) (MMSDH); go_function: oxidoreductase activity; go_process: metabolism; mitochondrial aldehyde dehydrogenase 448618 ALD6 4850920 ALD6 Pichia stipitis CBS 6054 mitochondrial aldehyde dehydrogenase XP_001387323.1 446987 D 322104 CDS PICST_66282 126273882 4850921 join(451931..451937,452236..453620) 1 NC_009068.1 hypothetical protein similar to SRP40 453620 SRP40.3 4850921 SRP40.3 Pichia stipitis CBS 6054 hypothetical protein similar to SRP40 XP_001387324.1 451931 D 322104 CDS PICST_37336 126273883 4850922 complement(454790..455899) 1 NC_009068.1 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily); go_function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; go_process: L-serine biosynthesis; alpha-ketoisocaproate reductase or hydroxyisocaproate dehydrogenase 455899 MDH98 4850922 MDH98 Pichia stipitis CBS 6054 alpha-ketoisocaproate reductase or hydroxyisocaproate dehydrogenase XP_001387725.1 454790 R 322104 CDS PICST_68734 126273884 4850923 457974..459845 1 NC_009068.1 D-xylulokinase (XYL3) [KO:K00854] third enzyme in the xylose pathway. Upregulated ca 20 fold on xylose; go_process: carbohydrate metabolism; go_process: carbohydrate metabolism; D-xylulokinase 459845 XKS1 4850923 XKS1 Pichia stipitis CBS 6054 D-xylulokinase XP_001387325.1 457974 D 322104 CDS PICST_28145 126273885 4850924 460165..461739 1 NC_009068.1 predicted protein 461739 4850924 PICST_28145 Pichia stipitis CBS 6054 predicted protein XP_001387326.1 460165 D 322104 CDS PICST_86170 126273886 4850925 462443..463558 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; Saccharopine dehydrogenase [NAD+, L-lysine-forming] (Lysine--2-oxoglutarate reductase) (SDH) 463558 LYS1 4850925 LYS1 Pichia stipitis CBS 6054 Saccharopine dehydrogenase [NAD+, L-lysine-forming] (Lysine--2-oxoglutarate reductase) (SDH) XP_001387327.1 462443 D 322104 CDS PICST_51318 126273887 4850926 complement(463784..>465043) 1 NC_009068.1 essential for cell growth and replication of M dsRNA virus contains four beta-transducin repeats >465043 MAK11 4850926 MAK11 Pichia stipitis CBS 6054 essential for cell growth and replication of M dsRNA virus contains four beta-transducin repeats XP_001387726.1 463784 R 322104 CDS PICST_52971 126273888 4850927 join(466106..466325,466356..468232) 1 NC_009068.1 required for the G2/M transition in mitosis and Degradation of mitotic cyclins; required for sporulation; anaphase-promoting complex component 468232 CDC16 4850927 CDC16 Pichia stipitis CBS 6054 anaphase-promoting complex component XP_001387328.1 466106 D 322104 CDS PICST_4679 126273889 4850928 join(<469549..470000,470076..>470892) 1 NC_009068.1 SVP1-like protein 2 470000 HSV2 4850928 HSV2 Pichia stipitis CBS 6054 SVP1-like protein 2 XP_001387329.1 <469549 D 322104 CDS PICST_80809 126273890 4850929 complement(join(471035..471469,471515..472117)) 1 NC_009068.1 predicted protein 472117 4850929 PICST_80809 Pichia stipitis CBS 6054 predicted protein XP_001387727.1 471035 R 322104 CDS PICST_86424 126273891 4850930 473192..475699 1 NC_009068.1 go_function: RNA binding; Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) 475699 PUF3 4850930 PUF3 Pichia stipitis CBS 6054 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) XP_001387330.1 473192 D 322104 CDS PICST_64791 126273892 4850931 complement(476250..477416) 1 NC_009068.1 Polysialic acid capsule expression protein kpsF; go_function: sugar binding; go_process: carbohydrate metabolism; Polysialic acid capsule expression protein 477416 KSF5 4850931 KSF5 Pichia stipitis CBS 6054 Polysialic acid capsule expression protein XP_001387728.1 476250 R 322104 CDS PICST_52626 126273893 4850932 complement(join(478857..481124,481164..483524)) 1 NC_009068.1 Tuberin - Rap/ran-GTPase-activating protein Cell cycle control, cell division, chromosome partitioning; Tuberous sclerosis 2 protein homolog 483524 TSC2 4850932 TSC2 Pichia stipitis CBS 6054 Tuberous sclerosis 2 protein homolog XP_001387729.1 478857 R 322104 CDS PICST_68755 126273894 4850933 complement(483907..485706) 1 NC_009068.1 go_component: membrane; go_process: transport; general amino acid permease 485706 GAP1.2 4850933 GAP1.2 Pichia stipitis CBS 6054 general amino acid permease XP_001387730.1 483907 R 322104 CDS PICST_37519 126273895 4850934 complement(486660..>487826) 1 NC_009068.1 Vacuolar protein sorting protein 62 >487826 VPS62 4850934 VPS62 Pichia stipitis CBS 6054 Vacuolar protein sorting protein 62 XP_001387731.1 486660 R 322104 CDS PICST_68997 126273896 4850935 complement(490345..491199) 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; NADH-cytochrome b-5 reductase 491199 CBR1 4850935 CBR1 Pichia stipitis CBS 6054 NADH-cytochrome b-5 reductase XP_001387732.1 490345 R 322104 CDS PICST_28157 126273897 4850936 492224..494146 1 NC_009068.1 Flavin-containing monooxygenase family; putative flavin-containing monooxygenase 494146 FMO4 4850936 FMO4 Pichia stipitis CBS 6054 putative flavin-containing monooxygenase XP_001387331.1 492224 D 322104 CDS PICST_86611 126273898 4850937 complement(495212..497044) 1 NC_009068.1 Predicted component of NuA3 histone acetyltransferase complex 497044 NUA3 4850937 NUA3 Pichia stipitis CBS 6054 Predicted component of NuA3 histone acetyltransferase complex XP_001387733.1 495212 R 322104 CDS PICST_69242 126273899 4850938 497966..499576 1 NC_009068.1 go_function: amino acid binding; go_process: amino acid biosynthesis; metabolism; aspartate kinase (L-aspartate 4-P- transferase) 499576 HOM3 4850938 HOM3 Pichia stipitis CBS 6054 aspartate kinase (L-aspartate 4-P- transferase) XP_001387332.1 497966 D 322104 CDS PICST_51369 126273900 4850939 complement(499900..500874) 1 NC_009068.1 Golgi vesicle protein similar to GVP36; Golgi vesicle protein 500874 GVP32 4850939 GVP32 Pichia stipitis CBS 6054 Golgi vesicle protein XP_001387734.1 499900 R 322104 CDS PICST_34099 126273901 4850940 complement(501554..503080) 1 NC_009068.1 aromatic amino acid aminotransferase II 503080 ARO9.1 4850940 ARO9.1 Pichia stipitis CBS 6054 aromatic amino acid aminotransferase II XP_001387735.1 501554 R 322104 CDS PICST_28162 126273902 4850941 complement(504149..505276) 1 NC_009068.1 spindle pole body component that organizes both cytoplasmic and nuclear microtubule arrays; go_component: tubulin; go_function: GTPase activity; GTP binding; go_process: microtubule polymerization; Gamma tubulin 505276 TUB4 4850941 TUB4 Pichia stipitis CBS 6054 Gamma tubulin XP_001387736.1 504149 R 322104 CDS PICST_80662 126273903 4850942 complement(506683..507594) 1 NC_009068.1 opaque-phase-specific protein OP4 precursor; hypothetical GPI-anchored cell wall protein 507594 OPS4.1 4850942 OPS4.1 Pichia stipitis CBS 6054 hypothetical GPI-anchored cell wall protein XP_001387737.1 506683 R 322104 CDS PICST_52045 126273904 4850943 join(510327..510602,510641..510654,510668..513508,513554..517706,517770..>518348) 1 NC_009068.1 conserved hypothetical protein; go_function: heme binding; electron transporter activity; mitochondrial protein 517706 4850943 PICST_52045 Pichia stipitis CBS 6054 mitochondrial protein XP_001387333.1 510327 D 322104 CDS PICST_86304 126273905 4850944 519424..522240 1 NC_009068.1 GTPase activating protein (GAP) for Ypt6 and Mac1 intercting protein; GTPase activating protein (GAP) 522240 GYP2 4850944 GYP2 Pichia stipitis CBS 6054 GTPase activating protein (GAP) XP_001387334.1 519424 D 322104 CDS PICST_66296 126273906 4850945 complement(522490..525417) 1 NC_009068.1 hypothetical serine-rich protein 525417 4850945 PICST_66296 Pichia stipitis CBS 6054 hypothetical serine-rich protein XP_001387738.1 522490 R 322104 CDS PICST_28167 126273907 4850946 complement(526746..527153) 1 NC_009068.1 predicted protein 527153 4850946 PICST_28167 Pichia stipitis CBS 6054 predicted protein XP_001387739.1 526746 R 322104 CDS PICST_80709 126273908 4850947 527793..528740 1 NC_009068.1 45 kDa subunit of RNA polymerase II 528740 RPB3 4850947 RPB3 Pichia stipitis CBS 6054 45 kDa subunit of RNA polymerase II XP_001387335.1 527793 D 322104 CDS PICST_34105 126273909 4850948 complement(528931..529755) 1 NC_009068.1 go_process: histidine biosynthesis; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (5-proFAR isomerase) 529755 HIS4 4850948 HIS4 Pichia stipitis CBS 6054 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (5-proFAR isomerase) XP_001387740.1 528931 R 322104 CDS PICST_6649 126273910 4850949 530006..>531004 1 NC_009068.1 FAF1 (Forty S assembly factor) >531004 FAF1 4850949 FAF1 Pichia stipitis CBS 6054 FAF1 (Forty S assembly factor) XP_001387336.1 530006 D 322104 CDS PICST_52465 126273911 4850950 complement(531627..>533669) 1 NC_009068.1 similar to Drosophila barren and Xenopus XCAP-H, and a functional homolog of human BRRN1; BaRreN >533669 BRN1 4850950 BRN1 Pichia stipitis CBS 6054 BaRreN XP_001387741.1 531627 R 322104 CDS PICST_80516 126273912 4850951 complement(535200..537449) 1 NC_009068.1 go_component: COPII vesicle coat; go_function: protein binding; go_process: intracellular protein transport; component of COPII coat of ER- Golgi vesicles 537449 SEC23 4850951 SEC23 Pichia stipitis CBS 6054 component of COPII coat of ER- Golgi vesicles XP_001387742.1 535200 R 322104 CDS PICST_66299 126273913 4850952 complement(join(539711..540123,540184..541081,541106..541165,541223..541504)) 1 NC_009068.1 myc-family transcription factor 541504 PHO4 4850952 PHO4 Pichia stipitis CBS 6054 myc-family transcription factor XP_001387743.1 539711 R 322104 CDS PICST_86417 126273914 4850953 complement(543817..545928) 1 NC_009068.1 go_function: ATP binding; metalloendopeptidase activity; go_process: proteolysis and peptidolysis; mitochondrial protein of the CDC48/PAS1/SEC18 family of ATPases 545928 YME1 4850953 YME1 Pichia stipitis CBS 6054 mitochondrial protein of the CDC48/PAS1/SEC18 family of ATPases XP_001387744.1 543817 R 322104 CDS PICST_28175 126273915 4850954 546416..546940 1 NC_009068.1 Sporulation-specific protein 73 546940 SPO73 4850954 SPO73 Pichia stipitis CBS 6054 Sporulation-specific protein 73 XP_001387337.1 546416 D 322104 CDS PICST_52642 126273916 4850955 complement(548269..>548868) 1 NC_009068.1 CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase; go_process: phospholipid biosynthesis; cardiolipin synthase >548868 CRD2 4850955 CRD2 Pichia stipitis CBS 6054 cardiolipin synthase XP_001387745.1 548269 R 322104 CDS PICST_28177 126273917 4850956 549630..551279 1 NC_009068.1 component of chaperonin-containing T-complex 551279 CCT8 4850956 CCT8 Pichia stipitis CBS 6054 component of chaperonin-containing T-complex XP_001387338.1 549630 D 322104 CDS PICST_38245 126273918 4850957 complement(551458..552210) 1 NC_009068.1 N-(5'-phosphoribosyl)anthranilate isomerase (PRAI); go_function: phosphoribosylanthranilate isomerase activity; go_process: tryptophan metabolism; phosphoribosylanthranilate isomerase 552210 TRP1 4850957 TRP1 Pichia stipitis CBS 6054 phosphoribosylanthranilate isomerase XP_001387746.1 551458 R 322104 CDS PICST_28179 126273919 4850958 complement(552342..554675) 1 NC_009068.1 Late Golgi protein sorting complex, subunit Vps53; protein required for protein sorting at the late Golgi 554675 VPS53 4850958 VPS53 Pichia stipitis CBS 6054 protein required for protein sorting at the late Golgi XP_001387747.1 552342 R 322104 CDS PICST_52303 126273920 4850959 join(<556923..558027,558064..558320,558369..559919) 1 NC_009068.1 protein involved in cell fusion and morphogenesis 559919 KEL2 4850959 KEL2 Pichia stipitis CBS 6054 protein involved in cell fusion and morphogenesis XP_001387339.1 <556923 D 322104 CDS PICST_28181 126273921 4850960 560612..561037 1 NC_009068.1 predicted protein 561037 4850960 PICST_28181 Pichia stipitis CBS 6054 predicted protein XP_001387340.1 560612 D 322104 CDS PICST_86474 126273922 4850961 complement(join(561279..561433,561503..561585,561727..562000,562100..562355,562425..563202,563326..563891)) 1 NC_009068.1 pH-response regulator protein 563891 RIM8 4850961 RIM8 Pichia stipitis CBS 6054 pH-response regulator protein XP_001387748.1 561279 R 322104 CDS PICST_37626 126273923 4850962 complement(566863..>567600) 1 NC_009068.1 nuclear localization sequence binding protein conserved; nuclear localization sequence binding protein >567600 NSR1 4850962 NSR1 Pichia stipitis CBS 6054 nuclear localization sequence binding protein XP_001387749.1 566863 R 322104 CDS PICST_68770 126273924 4850963 569571..571286 1 NC_009068.1 go_function: catalytic activity; 2-isopropylmalate synthase (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) 571286 LEU4 4850963 LEU4 Pichia stipitis CBS 6054 2-isopropylmalate synthase (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) XP_001387341.1 569571 D 322104 CDS PICST_69349 126273925 4850964 571836..572438 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S large subunit ribosomal protein 572438 RPL16B 4850964 RPL16B Pichia stipitis CBS 6054 60S large subunit ribosomal protein XP_001387342.1 571836 D 322104 CDS PICST_28186 126273926 4850965 complement(573197..574015) 1 NC_009068.1 predicted protein 574015 4850965 PICST_28186 Pichia stipitis CBS 6054 predicted protein XP_001387750.1 573197 R 322104 CDS PICST_28187 126273927 4850966 complement(575780..576577) 1 NC_009068.1 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain; cell wall integrity and stress response component 3 576577 WSC3 4850966 WSC3 Pichia stipitis CBS 6054 cell wall integrity and stress response component 3 XP_001387751.1 575780 R 322104 CDS PICST_85931 126273928 4850967 complement(577575..578711) 1 NC_009068.1 Glucose signaling factor 2 (Extracellular matrix protein 6); protein involved in glucose repression 578711 GSF2 4850967 GSF2 Pichia stipitis CBS 6054 protein involved in glucose repression XP_001387752.1 577575 R 322104 CDS PICST_86602 126273929 4850968 581878..583515 1 NC_009068.1 pH-responsive protein 2 precursor (pH-regulated protein 2) 583515 PHR2 4850968 PHR2 Pichia stipitis CBS 6054 pH-responsive protein 2 precursor (pH-regulated protein 2) XP_001387343.1 581878 D 322104 CDS PICST_28190 126273930 4850969 complement(584270..586303) 1 NC_009068.1 predicted protein 586303 4850969 PICST_28190 Pichia stipitis CBS 6054 predicted protein XP_001387753.1 584270 R 322104 CDS PICST_38184 126273931 4850970 complement(586492..>591576) 1 NC_009068.1 1,3-beta-glucan synthase component FKS3 (1,3-beta-D-glucan-UDP glucosyltransferase); go_component: 1,3-beta-glucan synthase complex; membrane; go_function: 1,3-beta-glucan synthase activity; go_process: beta-1,3 glucan biosynthesis; 1,3-beta-glucan synthase (FKS3) >591576 FKS3 4850970 FKS3 Pichia stipitis CBS 6054 1,3-beta-glucan synthase (FKS3) XP_001387754.1 586492 R 322104 CDS PICST_34117 126273932 4850971 join(592605..592610,593127..593155,593190,593211..594725) 1 NC_009068.1 predicted protein 594725 4850971 PICST_34117 Pichia stipitis CBS 6054 predicted protein XP_001387344.1 592605 D 322104 CDS PICST_80500 126273933 4850972 join(597959..598531,598620..598630,598720..598885) 1 NC_009068.1 go_function: molecular function unknown; protein involved in endosome to golgi protein transport 598885 VPS29 4850972 VPS29 Pichia stipitis CBS 6054 protein involved in endosome to golgi protein transport XP_001387345.1 597959 D 322104 CDS PICST_34119 126273934 4850973 complement(599168..599683) 1 NC_009068.1 go_component: nucleus; go_function: transcription regulator activity; go_process: regulation of transcription; transcriptional regulator involved in cell cycle regulation 599683 CDC36 4850973 CDC36 Pichia stipitis CBS 6054 transcriptional regulator involved in cell cycle regulation XP_001387755.1 599168 R 322104 CDS PICST_39137 126273935 4850974 600374..601063 1 NC_009068.1 Predicted nucleotide kinase/nuclear protein involved oxidative stress response 601063 FAP7 4850974 FAP7 Pichia stipitis CBS 6054 Predicted nucleotide kinase/nuclear protein involved oxidative stress response XP_001387346.1 600374 D 322104 CDS PICST_86063 126273936 4850975 complement(601333..602211) 1 NC_009068.1 go_function: heme oxygenase (decyclizing) activity; go_process: heme oxidation; heme binding protein 602211 HMX1 4850975 HMX1 Pichia stipitis CBS 6054 heme binding protein XP_001387756.1 601333 R 322104 CDS PICST_28198 126273937 4850976 604992..605372 1 NC_009068.1 predicted protein 605372 4850976 PICST_28198 Pichia stipitis CBS 6054 predicted protein XP_001387347.1 604992 D 322104 CDS PICST_28199 126273938 4850977 607037..607372 1 NC_009068.1 predicted protein 607372 4850977 PICST_28199 Pichia stipitis CBS 6054 predicted protein XP_001387348.1 607037 D 322104 CDS PICST_80517 126273939 4850978 complement(614975..616618) 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; probable hexose transporter 616618 HXT2.4 4850978 HXT2.4 Pichia stipitis CBS 6054 probable hexose transporter XP_001387757.1 614975 R 322104 CDS PICST_66312 126273940 4850979 619725..621170 1 NC_009068.1 endo-1,4-beta-glucanase (cellulase), (glycosyl hydrolase family 5); (EBG1) similar to bacterial [Clostridium thermocellum]; go_process: carbohydrate metabolism; Endo-1,4-beta-glucanase 621170 EGC2 4850979 EGC2 Pichia stipitis CBS 6054 Endo-1,4-beta-glucanase XP_001387349.1 619725 D 322104 CDS PICST_34123 126273941 4850980 623361..625892 1 NC_009068.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; beta-glucosidase 625892 BGL5 4850980 BGL5 Pichia stipitis CBS 6054 beta-glucosidase XP_001387350.1 623361 D 322104 CDS PICST_52674 126273942 4850981 complement(627418..629859) 1 NC_009068.1 Mitochondrial inheritance and actin cytoskeleton organization protein 629859 MDM20 4850981 MDM20 Pichia stipitis CBS 6054 Mitochondrial inheritance and actin cytoskeleton organization protein XP_001387758.1 627418 R 322104 CDS PICST_74899 126273943 4850982 631959..635222 1 NC_009068.1 go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; catalytic activity; go_process: cation transport; metabolism; P-type ATPase involved in Na+ efflux 635222 ENA2 4850982 ENA2 Pichia stipitis CBS 6054 P-type ATPase involved in Na+ efflux XP_001387351.1 631959 D 322104 CDS PICST_34127 126273944 4850983 complement(635406..636083) 1 NC_009068.1 go_function: catalytic activity; go_process: metabolism; putative phosphoglycerate mutase 636083 GPM1.3 4850983 GPM1.3 Pichia stipitis CBS 6054 putative phosphoglycerate mutase XP_001387759.1 635406 R 322104 CDS PICST_38073 126273945 4850984 complement(636399..637337) 1 NC_009068.1 ExtraCellular Matrix 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate hydroxymethyltransferase) (Extracellular matrix protein 31); go_function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity; go_process: pantothenate biosynthesis; protein involved in cell wall biogenesis and architecture 637337 ECM31 4850984 ECM31 Pichia stipitis CBS 6054 protein involved in cell wall biogenesis and architecture XP_001387760.1 636399 R 322104 CDS PICST_64811 126273946 4850985 638186..639151 1 NC_009068.1 glyoxalase I [KO:K01759]; glyoxalase I 639151 GLO1 4850985 GLO1 Pichia stipitis CBS 6054 glyoxalase I XP_001387352.1 638186 D 322104 CDS PICST_37445 126273947 4850986 join(639623..639694,639999..640241) 1 NC_009068.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 640241 4850986 PICST_37445 Pichia stipitis CBS 6054 predicted protein XP_001387353.1 639623 D 322104 CDS PICST_68683 126273948 4850987 642334..644592 1 NC_009068.1 go_component: membrane; go_function: ATP binding; go_process: transport; ATP-binding cassette (ABC) family, regulator of translational elongation 644592 GCN20 4850987 GCN20 Pichia stipitis CBS 6054 ATP-binding cassette (ABC) family, regulator of translational elongation XP_001387354.1 642334 D 322104 CDS PICST_38719 126273949 4850988 645124..646497 1 NC_009068.1 predicted protein 646497 4850988 PICST_38719 Pichia stipitis CBS 6054 predicted protein XP_001387355.1 645124 D 322104 CDS PICST_51706 126273950 4850989 complement(647029..647361) 1 NC_009068.1 predicted protein 647361 4850989 PICST_51706 Pichia stipitis CBS 6054 predicted protein XP_001387761.1 647029 R 322104 CDS PICST_51523 126273951 4850990 join(647881..647982,648351..648698) 1 NC_009068.1 predicted protein 648698 4850990 PICST_51523 Pichia stipitis CBS 6054 predicted protein XP_001387356.1 647881 D 322104 CDS PICST_37903 126273952 4850991 complement(649019..>650464) 1 NC_009068.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; deubiquitinating enzyme >650464 UBP6 4850991 UBP6 Pichia stipitis CBS 6054 deubiquitinating enzyme XP_001387762.1 649019 R 322104 CDS PICST_52962 126273953 4850992 complement(join(651953..652103,652131..652412,652440..653698)) 1 NC_009068.1 Autophagy-related protein 18 653698 ATG18 4850992 ATG18 Pichia stipitis CBS 6054 Autophagy-related protein 18 XP_001387763.1 651953 R 322104 CDS PICST_51371 126273954 4850993 complement(654622..655599) 1 NC_009068.1 predicted protein 655599 4850993 PICST_51371 Pichia stipitis CBS 6054 predicted protein XP_001387764.1 654622 R 322104 CDS PICST_39160 126273955 4850994 complement(656267..657718) 1 NC_009068.1 Endoglucanase C (EGC) (Endo-1,4-beta-glucanase) (Cellulase C) (GUNC); go_process: carbohydrate metabolism; Endoglucanase C (EGC) (Endo-1,4-beta-glucanase) (Cellulase C) 657718 EGC1 4850994 EGC1 Pichia stipitis CBS 6054 Endoglucanase C (EGC) (Endo-1,4-beta-glucanase) (Cellulase C) XP_001387765.1 656267 R 322104 CDS PICST_51227 126273956 4850995 complement(659296..661827) 1 NC_009068.1 go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; beta-glucosidase 661827 BGL6 4850995 BGL6 Pichia stipitis CBS 6054 beta-glucosidase XP_001387766.1 659296 R 322104 CDS PICST_52210 126273957 4850996 <663768..664130 1 NC_009068.1 predicted protein 664130 4850996 PICST_52210 Pichia stipitis CBS 6054 predicted protein XP_001387357.1 <663768 D 322104 CDS PICST_28220 126273958 4850997 complement(664382..666736) 1 NC_009068.1 Halotolerance protein HAL3 (contains flavoprotein domain) 666736 SIS2 4850997 SIS2 Pichia stipitis CBS 6054 Halotolerance protein HAL3 (contains flavoprotein domain) XP_001387767.1 664382 R 322104 CDS PICST_28221 126273959 4850998 668822..670501 1 NC_009068.1 aldehyde dehydrogenase some similarity to GAPN; go_function: oxidoreductase activity; go_process: metabolism; aldehyde dehydrogenase 670501 ALD7 4850998 ALD7 Pichia stipitis CBS 6054 aldehyde dehydrogenase XP_001387358.1 668822 D 322104 CDS PICST_28222 126273960 4850999 complement(670988..672145) 1 NC_009068.1 function substituted by human Bcl-XL; involved in cell survival; protein involved in the diauxic switch 672145 SVF1 4850999 SVF1 Pichia stipitis CBS 6054 protein involved in the diauxic switch XP_001387768.1 670988 R 322104 CDS PICST_80286 126273961 4851000 complement(join(677535..678340,678389..680090)) 1 NC_009068.1 actin-related protein 680090 ARP8 4851000 ARP8 Pichia stipitis CBS 6054 actin-related protein XP_001387769.1 677535 R 322104 CDS PICST_28225 126273962 4851001 complement(681834..682217) 1 NC_009068.1 predicted protein 682217 4851001 PICST_28225 Pichia stipitis CBS 6054 predicted protein XP_001387770.1 681834 R 322104 CDS PICST_69303 126273963 4851002 684409..685383 1 NC_009068.1 go_function: catalytic activity; go_process: metabolism; succinate-CoA ligase 685383 LSC1 4851002 LSC1 Pichia stipitis CBS 6054 succinate-CoA ligase XP_001387359.1 684409 D 322104 CDS PICST_28227 126273964 4851003 685674..686189 1 NC_009068.1 Function required for Yeast Viability on toxin exposure; protein involved in toxin resistance 686189 FYV4 4851003 FYV4 Pichia stipitis CBS 6054 protein involved in toxin resistance XP_001387360.1 685674 D 322104 CDS PICST_28228 126273965 4851004 686737..691563 1 NC_009068.1 go_component: nucleus; go_function: peptidase activity; go_process: proteolysis and peptidolysis; separin protein 691563 ESP1 4851004 ESP1 Pichia stipitis CBS 6054 separin protein XP_001387361.1 686737 D 322104 CDS PICST_38981 126273966 4851005 692665..694287 1 NC_009068.1 Predicted transporter (major facilitator superfamily) similar to MAL31; go_component: integral to membrane; go_function: transporter activity; go_process: transport; Predicted transporter (major facilitator superfamily) 694287 HXT2.2 4851005 HXT2.2 Pichia stipitis CBS 6054 Predicted transporter (major facilitator superfamily) XP_001387362.1 692665 D 322104 CDS PICST_37839 126273967 4851006 complement(695196..696662) 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; predicted protein 696662 4851006 PICST_37839 Pichia stipitis CBS 6054 predicted protein XP_001387771.1 695196 R 322104 CDS PICST_28231 126273968 4851007 697533..699668 1 NC_009068.1 go_function: X-Pro aminopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 699668 4851007 PICST_28231 Pichia stipitis CBS 6054 predicted protein XP_001387363.1 697533 D 322104 CDS PICST_38342 126273969 4851008 complement(join(700543..700836,700909..701979)) 1 NC_009068.1 IMP 5'-nucleotidase 701979 ISN1 4851008 ISN1 Pichia stipitis CBS 6054 IMP 5'-nucleotidase XP_001387772.1 700543 R 322104 CDS PICST_34143 126273970 4851009 complement(join(703464..704238,704754..704767)) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; RNA binding; go_process: protein biosynthesis; ribosomal protein S4 704767 RPS4 4851009 RPS4 Pichia stipitis CBS 6054 ribosomal protein S4 XP_001387773.1 703464 R 322104 CDS PICST_52100 126273971 4851010 complement(705960..706748) 1 NC_009068.1 possible complex I intermediate associated protein 706748 CIA30 4851010 CIA30 Pichia stipitis CBS 6054 possible complex I intermediate associated protein XP_001387774.1 705960 R 322104 CDS PICST_86463 126273972 4851011 709477..710481 1 NC_009068.1 go_function: oxidoreductase activity; go_process: metabolism; predicted protein 710481 4851011 PICST_86463 Pichia stipitis CBS 6054 predicted protein XP_001387364.1 709477 D 322104 CDS PICST_28236 126273973 4851012 join(711792..711808,712096..712945) 1 NC_009068.1 predicted protein 712945 4851012 PICST_28236 Pichia stipitis CBS 6054 predicted protein XP_001387365.1 711792 D 322104 CDS PICST_28237 126273974 4851013 complement(713296..714147) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: RNA binding; structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 714147 4851013 PICST_28237 Pichia stipitis CBS 6054 predicted protein XP_001387775.1 713296 R 322104 CDS PICST_34146 126273976 4851014 714755..718453 1 NC_009068.1 go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; DNA-dependent RNA polymerase II 718453 RPB140 4851014 RPB140 Pichia stipitis CBS 6054 DNA-dependent RNA polymerase II XP_001387366.1 714755 D 322104 CDS PICST_37954 126273977 4851015 complement(718746..719270) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 719270 4851015 PICST_37954 Pichia stipitis CBS 6054 predicted protein XP_001387776.1 718746 R 322104 CDS PICST_28240 126273978 4851016 720126..720647 1 NC_009068.1 go_function: RNA binding; DNA-directed RNA polymerase activity; go_process: transcription; RNA polymerase II subunit 720647 RPB7 4851016 RPB7 Pichia stipitis CBS 6054 RNA polymerase II subunit XP_001387367.1 720126 D 322104 CDS PICST_28241 126273979 4851017 complement(720870..725801) 1 NC_009068.1 go_component: nucleus; go_function: DNA binding; zinc ion binding; hypothetical protein 725801 SIZ1 4851017 SIZ1 Pichia stipitis CBS 6054 hypothetical protein XP_001387777.1 720870 R 322104 CDS PICST_34149 126273982 4851018 complement(join(727204..728728,728817..728818,728845..728907)) 1 NC_009068.1 go_process: intracellular signaling cascade; vacuolar sorting protein 728907 VPS17 4851018 VPS17 Pichia stipitis CBS 6054 vacuolar sorting protein XP_001387778.1 727204 R 322104 CDS PICST_66320 126273985 4851019 complement(729351..731402) 1 NC_009068.1 predicted protein 731402 4851019 PICST_66320 Pichia stipitis CBS 6054 predicted protein XP_001387779.1 729351 R 322104 CDS PICST_38727 126273989 4851020 732160..733971 1 NC_009068.1 Arginyl-tRNA synthetase (ArgRS1); go_function: arginine-tRNA ligase activity; ATP binding; go_process: arginyl-tRNA aminoacylation; arginyl-tRNA synthetase 733971 SYR1 4851020 SYR1 Pichia stipitis CBS 6054 arginyl-tRNA synthetase XP_001387368.1 732160 D 322104 CDS PICST_34151 126273994 4851021 734681..735364 1 NC_009068.1 go_function: superoxide dismutase activity; metal ion binding; go_process: superoxide metabolism; manganese-superoxide dismutase 735364 SOD3.2 4851021 SOD3.2 Pichia stipitis CBS 6054 manganese-superoxide dismutase XP_001387369.1 734681 D 322104 CDS PICST_38525 126273998 4851022 complement(739176..>739997) 1 NC_009068.1 predicted protein >739997 4851022 PICST_38525 Pichia stipitis CBS 6054 predicted protein XP_001387780.1 739176 R 322104 CDS PICST_75104 126274000 4851023 complement(746416..746937) 1 NC_009068.1 hypothetical protein 746937 4851023 PICST_75104 Pichia stipitis CBS 6054 hypothetical protein XP_001387781.1 746416 R 322104 CDS PICST_74777 126274003 4851024 748226..748984 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S2 (S4) (YS5) (RP12) (Omnipotent suppressor protein SUP44) 748984 RPS2 4851024 RPS2 Pichia stipitis CBS 6054 40S ribosomal protein S2 (S4) (YS5) (RP12) (Omnipotent suppressor protein SUP44) XP_001387370.1 748226 D 322104 CDS PICST_80143 126274007 4851025 complement(join(749578..750437,750474..750558,750700..751056)) 1 NC_009068.1 Nuclear polyadenylated RNA-binding protein; polyadenylated RNA binding protein 751056 NAB2 4851025 NAB2 Pichia stipitis CBS 6054 polyadenylated RNA binding protein XP_001387782.1 749578 R 322104 CDS PICST_28250 126274010 4851026 complement(751270..754485) 1 NC_009068.1 predicted protein 754485 4851026 PICST_28250 Pichia stipitis CBS 6054 predicted protein XP_001387783.1 751270 R 322104 CDS PICST_80246 126274012 4851027 complement(join(755011..756396,756493..756789)) 1 NC_009068.1 multicopy suppressor of a cytochrome b mRNA translation defect, essential for the electron transfer in the bc1 complex; mitochondrial chaperone 756789 ABC1 4851027 ABC1 Pichia stipitis CBS 6054 mitochondrial chaperone XP_001387784.1 755011 R 322104 CDS PICST_68960 126274014 4851028 759843..760868 1 NC_009068.1 ras homolog--GTP binding protein; go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein (RHO4) 760868 CRL1 4851028 CRL1 Pichia stipitis CBS 6054 GTP-binding protein (RHO4) XP_001387371.1 759843 D 322104 CDS PICST_28253 126274015 4851029 762593..764152 1 NC_009068.1 Yeast Sphingolipid Resistance Gene 764152 YSR3 4851029 YSR3 Pichia stipitis CBS 6054 Yeast Sphingolipid Resistance Gene XP_001387372.1 762593 D 322104 CDS PICST_51919 126274016 4851030 768223..769905 1 NC_009068.1 tRNA(m5U54)methyltransferase 769905 TRM2 4851030 TRM2 Pichia stipitis CBS 6054 tRNA(m5U54)methyltransferase XP_001387373.1 768223 D 322104 CDS PICST_38424 126274017 4851031 join(770415..770438,770949..771188) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 40S ribosomal protein S21 (S26) (YS25) 771188 RPS21 4851031 RPS21 Pichia stipitis CBS 6054 40S ribosomal protein S21 (S26) (YS25) XP_001387374.1 770415 D 322104 CDS PICST_86206 126274018 4851032 772819..774696 1 NC_009068.1 go_function: transferase activity, transferring hexosyl groups; go_process: carbohydrate biosynthesis; self-glucosylating initiator of glycogen synthesis 774696 GLG1 4851032 GLG1 Pichia stipitis CBS 6054 self-glucosylating initiator of glycogen synthesis XP_001387375.1 772819 D 322104 CDS PICST_74636 126274019 4851033 775203..776396 1 NC_009068.1 go_function: nucleic acid binding; helicase activity; ATP binding; Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) 776396 TIF1 4851033 TIF1 Pichia stipitis CBS 6054 Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) XP_001387376.1 775203 D 322104 CDS PICST_66330 126274020 4851034 776873..777814 1 NC_009068.1 hypothetical protein 777814 4851034 PICST_66330 Pichia stipitis CBS 6054 hypothetical protein XP_001387377.1 776873 D 322104 CDS PICST_28260 126274021 4851035 777950..779050 1 NC_009068.1 predicted protein 779050 4851035 PICST_28260 Pichia stipitis CBS 6054 predicted protein XP_001387378.1 777950 D 322104 CDS PICST_69362 126274022 4851036 779460..779945 1 NC_009068.1 go_process: dUTP metabolism; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) 779945 DUT1 4851036 DUT1 Pichia stipitis CBS 6054 Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) XP_001387379.1 779460 D 322104 CDS PICST_37719 126274023 4851037 complement(780140..>781279) 1 NC_009068.1 Mitochondrial Distribution and Morphology >781279 MDM38 4851037 MDM38 Pichia stipitis CBS 6054 Mitochondrial Distribution and Morphology XP_001387785.1 780140 R 322104 CDS PICST_28263 126274024 4851038 complement(782497..783513) 1 NC_009068.1 go_function: electron transporter activity; go_process: electron transport; thioredoxin 783513 TRX2 4851038 TRX2 Pichia stipitis CBS 6054 thioredoxin XP_001387786.1 782497 R 322104 CDS PICST_64822 126274025 4851039 join(785143..785836,785886..785949,785985..786909) 1 NC_009068.1 conserved hypothetical protein 786909 4851039 PICST_64822 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387380.1 785143 D 322104 CDS PICST_52103 126274026 4851040 complement(786939..>788327) 1 NC_009068.1 2-dehydro-3-deoxy- phosphoheptonate aldolase (putative). Part of a segment (ChR1.1:75750-80000) that is not conserved in C. albicans; 2-dehydro-3-deoxy- phosphoheptonate aldolase (putative) >788327 ARO3.2 4851040 ARO3.2 Pichia stipitis CBS 6054 2-dehydro-3-deoxy- phosphoheptonate aldolase (putative) XP_001387787.1 786939 R 322104 CDS PICST_28267 126274027 4851041 complement(790255..791664) 1 NC_009068.1 transactivator protein 791664 CTA9 4851041 CTA9 Pichia stipitis CBS 6054 transactivator protein XP_001387788.1 790255 R 322104 CDS PICST_38328 126274028 4851042 792367..792846 1 NC_009068.1 Transport protein particle 20 kDa subunit (TRAPP 20 kDa subunit) 792846 TRS20 4851042 TRS20 Pichia stipitis CBS 6054 Transport protein particle 20 kDa subunit (TRAPP 20 kDa subunit) XP_001387381.1 792367 D 322104 CDS PICST_28269 126274029 4851043 complement(join(793149..794548,794588..795083)) 1 NC_009068.1 conserved hypothetical protein, located in mitochondrion 795083 FMP29 4851043 FMP29 Pichia stipitis CBS 6054 conserved hypothetical protein, located in mitochondrion XP_001387789.1 793149 R 322104 CDS PICST_52416 126274030 4851044 complement(join(795318..795552,795589..795604,795662..795688,795821..796248,796369..796538)) 1 NC_009068.1 hypothetical conserved protein 796538 4851044 PICST_52416 Pichia stipitis CBS 6054 hypothetical conserved protein XP_001387790.1 795318 R 322104 CDS PICST_28271 126274031 4851045 complement(797782..799914) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; Rac GTPase-activating protein BCR/ABR 799914 STB5 4851045 STB5 Pichia stipitis CBS 6054 Rac GTPase-activating protein BCR/ABR XP_001387791.1 797782 R 322104 CDS PICST_51784 126274032 4851046 803824..805956 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; hypothetical protein 805956 4851046 PICST_51784 Pichia stipitis CBS 6054 hypothetical protein XP_001387382.1 803824 D 322104 CDS PICST_34164 126274033 4851047 806230..807012 1 NC_009068.1 Exosome complex exonuclease RRP40 (Ribosomal RNA processing protein 40) 807012 RRP40 4851047 RRP40 Pichia stipitis CBS 6054 Exosome complex exonuclease RRP40 (Ribosomal RNA processing protein 40) XP_001387383.1 806230 D 322104 CDS PICST_80234 126274034 4851048 807314..809392 1 NC_009068.1 carboxymethyltransferase 809392 PPM2 4851048 PPM2 Pichia stipitis CBS 6054 carboxymethyltransferase XP_001387384.1 807314 D 322104 CDS PICST_37600 126274035 4851049 join(<811907..812025,812131..813266,813327..813451,813551..>813751) 1 NC_009068.1 regulatory subunit for phosphoprotein phosphatase type 1 (PP-1) (PIG); regulatory subunit for phosphoprotein phosphatase type 1 (PP-1) 813451 GAC2 4851049 GAC2 Pichia stipitis CBS 6054 regulatory subunit for phosphoprotein phosphatase type 1 (PP-1) XP_001387385.1 <811907 D 322104 CDS PICST_64825 126274036 4851050 complement(join(814633..815786,815880..816482,816681..816762)) 1 NC_009068.1 F-box protein involved in sulfur metabolism; SCF complex F-box protein MET30 816762 MET30 4851050 MET30 Pichia stipitis CBS 6054 SCF complex F-box protein MET30 XP_001387792.1 814633 R 322104 CDS PICST_37460 126274037 4851051 818805..820298 1 NC_009068.1 go_function: protein binding; zinc ion binding; nucleolar zinc-finger protein 820298 ZPR1 4851051 ZPR1 Pichia stipitis CBS 6054 nucleolar zinc-finger protein XP_001387386.1 818805 D 322104 CDS PICST_51869 126274038 4851052 complement(join(820363..826148,826176..826714,826736..>827031)) 1 NC_009068.1 go_component: membrane; go_function: ion channel activity; go_process: ion transport; calcium channel protein 826714 CCH1 4851052 CCH1 Pichia stipitis CBS 6054 calcium channel protein XP_001387793.1 820363 R 322104 CDS PICST_52088 126274039 4851053 829308..829619 1 NC_009068.1 mitochondrial ribosome small subunit component 829619 RSM27 4851053 RSM27 Pichia stipitis CBS 6054 mitochondrial ribosome small subunit component XP_001387387.1 829308 D 322104 CDS PICST_37589 126274040 4851054 complement(<830356..>831360) 1 NC_009068.1 predicted protein >831360 4851054 PICST_37589 Pichia stipitis CBS 6054 predicted protein XP_001387794.1 <830356 R 322104 CDS PICST_28281 126274041 4851055 832001..833662 1 NC_009068.1 predicted protein 833662 4851055 PICST_28281 Pichia stipitis CBS 6054 predicted protein XP_001387388.1 832001 D 322104 CDS PICST_80169 126274042 4851056 834661..837912 1 NC_009068.1 vacuolar acid trehalase 837912 ATH1 4851056 ATH1 Pichia stipitis CBS 6054 vacuolar acid trehalase XP_001387389.1 834661 D 322104 CDS PICST_80311 126274043 4851057 complement(join(838175..839496,839530..841942)) 1 NC_009068.1 component of the COPII coat of ER-Golgi vesicles 841942 SEC31 4851057 SEC31 Pichia stipitis CBS 6054 component of the COPII coat of ER-Golgi vesicles XP_001387795.1 838175 R 322104 CDS PICST_51125 126274044 4851058 <842948..844225 1 NC_009068.1 predicted protein 844225 4851058 PICST_51125 Pichia stipitis CBS 6054 predicted protein XP_001387390.1 <842948 D 322104 CDS PICST_51842 126274045 4851059 join(844685..844959,845065..847558) 1 NC_009068.1 predicted protein 847558 4851059 PICST_51842 Pichia stipitis CBS 6054 predicted protein XP_001387391.1 844685 D 322104 CDS PICST_51902 126274046 4851060 <849657..849986 1 NC_009068.1 maintenance of mitochondrial DNA 849986 MMD1 4851060 MMD1 Pichia stipitis CBS 6054 maintenance of mitochondrial DNA XP_001387392.1 <849657 D 322104 CDS PICST_69102 126274047 4851061 join(850509..850545,850995..851326) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein L34 851326 RPL34 4851061 RPL34 Pichia stipitis CBS 6054 ribosomal protein L34 XP_001387393.1 850509 D 322104 CDS PICST_37629 126274048 4851062 852599..852805 1 NC_009068.1 predicted protein 852805 4851062 PICST_37629 Pichia stipitis CBS 6054 predicted protein XP_001387394.1 852599 D 322104 CDS PICST_28287 126274049 4851063 complement(853129..854673) 1 NC_009068.1 go_component: integral to membrane; putative transporter or flippase transmembrane protein 854673 RTA2 4851063 RTA2 Pichia stipitis CBS 6054 putative transporter or flippase transmembrane protein XP_001387796.1 853129 R 322104 CDS PICST_28288 126274050 4851064 complement(856123..858552) 1 NC_009068.1 cyclin like protein interacting with PHO85 858552 PCL7 4851064 PCL7 Pichia stipitis CBS 6054 cyclin like protein interacting with PHO85 XP_001387797.1 856123 R 322104 CDS PICST_39071 126274051 4851065 859722..859994 1 NC_009068.1 cytochrome c oxidase assembly factor 859994 PET117 4851065 PET117 Pichia stipitis CBS 6054 cytochrome c oxidase assembly factor XP_001387395.1 859722 D 322104 CDS PICST_66342 126274052 4851066 complement(861203..862270) 1 NC_009068.1 Dual-specificity tyrosine-phosphorylation regulated kinase; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; C2H2 Zinc finger domain-containing protein 862270 YAK3 4851066 YAK3 Pichia stipitis CBS 6054 C2H2 Zinc finger domain-containing protein XP_001387798.1 861203 R 322104 CDS PICST_51094 126274053 4851067 complement(863389..864948) 1 NC_009068.1 go_component: membrane; go_process: transport; dicarboxylic amino acid permease 864948 DIP5.4 4851067 DIP5.4 Pichia stipitis CBS 6054 dicarboxylic amino acid permease XP_001387799.1 863389 R 322104 CDS PICST_80317 126274054 4851068 complement(join(866764..867263,867393..867753)) 1 NC_009068.1 go_function: microtubule binding; Bim1p and Kar9p together make up the cortical microtubule-capture site. delays the exit from mitosis when the spindle is oriented abnormally 867753 BIM1 4851068 BIM1 Pichia stipitis CBS 6054 Bim1p and Kar9p together make up the cortical microtubule-capture site. delays the exit from mitosis when the spindle is oriented abnormally XP_001387800.1 866764 R 322104 CDS PICST_51913 126274055 4851069 868937..869746 1 NC_009068.1 go_process: phospholipid biosynthesis; phosphatidylserine synthase 869746 CHO1 4851069 CHO1 Pichia stipitis CBS 6054 phosphatidylserine synthase XP_001387396.1 868937 D 322104 CDS PICST_52909 126274056 4851070 complement(join(869981..870475,870780..>870848)) 1 NC_009068.1 hypothetical protein 870475 4851070 PICST_52909 Pichia stipitis CBS 6054 hypothetical protein XP_001387801.1 869981 R 322104 CDS PICST_52759 126274057 4851071 871166..872581 1 NC_009068.1 mitochondrial inner membrane protein required for protein import 872581 TIM50 4851071 TIM50 Pichia stipitis CBS 6054 mitochondrial inner membrane protein required for protein import XP_001387397.1 871166 D 322104 CDS PICST_51161 126274058 4851072 join(873822..874461,874522..875553,875572..875762) 1 NC_009068.1 jun-like transcription factor 875762 SRP40 4851072 SRP40 Pichia stipitis CBS 6054 jun-like transcription factor XP_001387398.1 873822 D 322104 CDS PICST_52766 126274059 4851073 complement(876181..876909) 1 NC_009068.1 go_function: GTP binding; putative ADP-ribosylation factor in the carboxypeptidase Y pathway 876909 ARL3 4851073 ARL3 Pichia stipitis CBS 6054 putative ADP-ribosylation factor in the carboxypeptidase Y pathway XP_001387802.1 876181 R 322104 CDS PICST_86222 126274060 4851074 complement(877662..878990) 1 NC_009068.1 go_component: endoplasmic reticulum membrane; go_function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity; go_process: N-linked glycosylation via asparagine; oligosaccharyl transferase beta subunit precursor 878990 WBP1 4851074 WBP1 Pichia stipitis CBS 6054 oligosaccharyl transferase beta subunit precursor XP_001387803.1 877662 R 322104 CDS PICST_34179 126274061 4851075 879622..879927 1 NC_009068.1 ubiquitin-like protein 879927 URM12 4851075 URM12 Pichia stipitis CBS 6054 ubiquitin-like protein XP_001387399.1 879622 D 322104 CDS PICST_51946 126274062 4851076 complement(join(880193..880472,880512..880903)) 1 NC_009068.1 probable 26S proteasome regulatory subunit 880903 NAS2 4851076 NAS2 Pichia stipitis CBS 6054 probable 26S proteasome regulatory subunit XP_001387804.1 880193 R 322104 CDS PICST_80841 126274063 4851077 complement(join(881296..882513,882544..882792)) 1 NC_009068.1 conserved hypothetical protein 882792 4851077 PICST_80841 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387805.1 881296 R 322104 CDS PICST_52656 126274064 4851078 complement(883216..883893) 1 NC_009068.1 conserved hypothetical protein 883893 4851078 PICST_52656 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387806.1 883216 R 322104 CDS PICST_51108 126274065 4851079 join(884504..884590,884606..885544) 1 NC_009068.1 Golgi vesicle protein 885544 GVP36 4851079 GVP36 Pichia stipitis CBS 6054 Golgi vesicle protein XP_001387400.1 884504 D 322104 CDS PICST_51171 126274066 4851080 885908..886285 1 NC_009068.1 prefoldin subunit 2 886285 GIM4 4851080 GIM4 Pichia stipitis CBS 6054 prefoldin subunit 2 XP_001387401.1 885908 D 322104 CDS PICST_37619 126274067 4851081 complement(886501..887037) 1 NC_009068.1 conserved hypothetical protein 887037 4851081 PICST_37619 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387807.1 886501 R 322104 CDS PICST_51666 126274068 4851082 join(887884..889354,889394..889548) 1 NC_009068.1 polyadenylation factor I subunit 2 889548 PFS2 4851082 PFS2 Pichia stipitis CBS 6054 polyadenylation factor I subunit 2 XP_001387402.1 887884 D 322104 CDS PICST_66347 126274069 4851083 complement(890186..891310) 1 NC_009068.1 Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase; go_function: catalytic activity; ATP binding; go_process: fructose 2,6-bisphosphate metabolism; 6-phosphofructo-2-kinase 891310 PFK26 4851083 PFK26 Pichia stipitis CBS 6054 6-phosphofructo-2-kinase XP_001387808.1 890186 R 322104 CDS PICST_28308 126274070 4851084 complement(892771..895233) 1 NC_009068.1 putative part of mitochondrial translation system 895233 PET127 4851084 PET127 Pichia stipitis CBS 6054 putative part of mitochondrial translation system XP_001387809.1 892771 R 322104 CDS PICST_28309 126274071 4851085 join(896169..896172,896673..897433) 1 NC_009068.1 60S large subunit ribosomal protein L2B; go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S large subunit ribosomal protein L2A 897433 RPL2A 4851085 RPL2A Pichia stipitis CBS 6054 60S large subunit ribosomal protein L2A XP_001387403.1 896169 D 322104 CDS PICST_28310 126274072 4851086 complement(join(897603..898773,898888..899051)) 1 NC_009068.1 Similar to single stranded nucleic acid binding protein; single stranded nucleic acid binding protein 899051 SBP1 4851086 SBP1 Pichia stipitis CBS 6054 single stranded nucleic acid binding protein XP_001387810.1 897603 R 322104 CDS PICST_23872 126274073 4851087 complement(<899639..899818) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L29 899818 RL29 4851087 RL29 Pichia stipitis CBS 6054 60S ribosomal protein L29 XP_001387811.1 <899639 R 322104 CDS PICST_26963 126274074 4851088 complement(<900810..901568) 1 NC_009068.1 go_component: ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L7A 901568 RPL8A 4851088 RPL8A Pichia stipitis CBS 6054 60S ribosomal protein L7A XP_001387812.1 <900810 R 322104 CDS PICST_51834 126274075 4851089 complement(join(902176..902410,902483..904163,904185..>904278)) 1 NC_009068.1 Ferric reductase, NADH/NADPH oxidase transmembrane component (7 domains); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; ferric reductase (FRE11) 904163 FRE1.5 4851089 FRE1.5 Pichia stipitis CBS 6054 ferric reductase (FRE11) XP_001387813.1 902176 R 322104 CDS PICST_52187 126274076 4851090 906636..907823 1 NC_009068.1 Pex24p Integral peroxisomal membrane peroxin 907823 IPM1 4851090 IPM1 Pichia stipitis CBS 6054 Pex24p Integral peroxisomal membrane peroxin XP_001387404.1 906636 D 322104 CDS PICST_34189 126274077 4851091 908151..908549 1 NC_009068.1 nucleolar coiled- coil protein 908549 YGC9 4851091 YGC9 Pichia stipitis CBS 6054 nucleolar coiled- coil protein XP_001387405.1 908151 D 322104 CDS PICST_38880 126274078 4851092 909439..910182 1 NC_009068.1 go_component: nucleus; transcription factor TFIID complex; go_function: DNA binding; RNA polymerase II transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcription initiation from RNA polymerase II promoter; TATA-binding protein 910182 SPT15 4851092 SPT15 Pichia stipitis CBS 6054 TATA-binding protein XP_001387406.1 909439 D 322104 CDS PICST_28317 126274079 4851093 complement(910483..911931) 1 NC_009068.1 AP endonuclease 911931 APN2 4851093 APN2 Pichia stipitis CBS 6054 AP endonuclease XP_001387814.1 910483 R 322104 CDS PICST_52608 126274080 4851094 913349..915205 1 NC_009068.1 protein required for some forms of polarized growth, localized to sites of polarized growth 915205 PEA2 4851094 PEA2 Pichia stipitis CBS 6054 protein required for some forms of polarized growth, localized to sites of polarized growth XP_001387407.1 913349 D 322104 CDS PICST_51041 126274081 4851095 916307..918352 1 NC_009068.1 nuclear pore complex subunit 918352 NUP189 4851095 NUP189 Pichia stipitis CBS 6054 nuclear pore complex subunit XP_001387408.1 916307 D 322104 CDS PICST_64832 126274082 4851096 complement(918541..919968) 1 NC_009068.1 go_function: RNA binding; pseudouridylate synthase activity; go_process: RNA processing; nucleolar pseuduridine synthase and putative microtubule binding protein 919968 CBF5 4851096 CBF5 Pichia stipitis CBS 6054 nucleolar pseuduridine synthase and putative microtubule binding protein XP_001387815.1 918541 R 322104 CDS PICST_52543 126274083 4851097 complement(join(920625..921259,921308..921547,922061..922793)) 1 NC_009068.1 putative ubiquitin receptor implicated in vacuolar targeting of plasma membrane proteins 922793 STP22 4851097 STP22 Pichia stipitis CBS 6054 putative ubiquitin receptor implicated in vacuolar targeting of plasma membrane proteins XP_001387816.1 920625 R 322104 CDS PICST_39176 126274084 4851098 <923556..923765 1 NC_009068.1 Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2 kDa membrane accessory protein); go_component: integral to membrane; proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP synthase subunit H family protein (Va0H) (ATP6H) (Atp6v0e) 923765 ATP6 4851098 ATP6 Pichia stipitis CBS 6054 ATP synthase subunit H family protein (Va0H) (ATP6H) (Atp6v0e) XP_001387409.1 <923556 D 322104 CDS PICST_66350 126274085 4851099 925089..926999 1 NC_009068.1 hypothetical protein 926999 4851099 PICST_66350 Pichia stipitis CBS 6054 hypothetical protein XP_001387410.1 925089 D 322104 CDS PICST_52358 126274086 4851100 <928154..929617 1 NC_009068.1 The acronym may be misleading. AGP3 has not been shown to be a general amino acid permease with broad substrate specificity in S. cerevisiae; go_component: membrane; go_process: transport; amino acid permease 929617 AGP3 4851100 AGP3 Pichia stipitis CBS 6054 amino acid permease XP_001387411.1 <928154 D 322104 CDS PICST_66351 126274087 4851101 936087..937781 1 NC_009068.1 zf-C2H2 Zinc finger, C2H2 type some similarity to ScRME1, which mediates cell type control of sporulation negatively regulates IME1 and sporulation; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 937781 RME1 4851101 RME1 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001387412.1 936087 D 322104 CDS PICST_51972 126274088 4851102 939116..940201 1 NC_009068.1 flavonol synthase 940201 GBD1 4851102 GBD1 Pichia stipitis CBS 6054 flavonol synthase XP_001387413.1 939116 D 322104 CDS PICST_28326 126274089 4851103 join(941218..941238,941440..>941769) 1 NC_009068.1 ATPase component of a four subunit chromatin remodeling complex (N-terminus); ATPase component of a four subunit chromatin remodeling complex 941238 ISW1.1 4851103 ISW1.1 Pichia stipitis CBS 6054 ATPase component of a four subunit chromatin remodeling complex XP_001387414.1 941218 D 322104 CDS PICST_39246 126274090 4851104 941908..944490 1 NC_009068.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; ATPase component of a four subunit chromatin remodeling complex 944490 ISW1.2 4851104 ISW1.2 Pichia stipitis CBS 6054 ATPase component of a four subunit chromatin remodeling complex XP_001387415.1 941908 D 322104 CDS PICST_52875 126274091 4851105 complement(944837..945394) 1 NC_009068.1 go_function: glutathione peroxidase activity; go_process: response to oxidative stress; Hydroperoxide resistance conferring gene. Sensor and transducer of the hydroperoxide signal to Yap1. Hydroperoxide receptor and redox-transducer 945394 HYR1 4851105 HYR1 Pichia stipitis CBS 6054 Hydroperoxide resistance conferring gene. Sensor and transducer of the hydroperoxide signal to Yap1. Hydroperoxide receptor and redox-transducer XP_001387817.1 944837 R 322104 CDS PICST_28329 126274092 4851106 join(946981..948087,948196..948379,948403..948427,948522..948777) 1 NC_009068.1 mitochondrial outer membrane protein involved in mitochondrial shape 948777 MDM34 4851106 MDM34 Pichia stipitis CBS 6054 mitochondrial outer membrane protein involved in mitochondrial shape XP_001387416.1 946981 D 322104 CDS PICST_68970 126274093 4851107 951724..952653 1 NC_009068.1 protein involved in chitin synthesis 952653 CHS7 4851107 CHS7 Pichia stipitis CBS 6054 protein involved in chitin synthesis XP_001387417.1 951724 D 322104 CDS PICST_66353 126274094 4851108 join(954157..955177,955245..955260,955299..956037) 1 NC_009068.1 cortical Rho GTPase activating protein 956037 RGD1 4851108 RGD1 Pichia stipitis CBS 6054 cortical Rho GTPase activating protein XP_001387418.1 954157 D 322104 CDS PICST_27132 126274095 4851109 complement(join(<956392..956490,956518..956732,956772..>957018)) 1 NC_009068.1 hypothetical protein 956732 4851109 PICST_27132 Pichia stipitis CBS 6054 hypothetical protein XP_001387818.1 <956392 R 322104 CDS PICST_80515 126274096 4851110 join(957647..958024,958106..958391,958461..960148) 1 NC_009068.1 go_process: cell cycle; cullin, ubiquitin ligase activity 960148 CUL4 4851110 CUL4 Pichia stipitis CBS 6054 cullin, ubiquitin ligase activity XP_001387419.1 957647 D 322104 CDS PICST_52082 126274097 4851111 complement(960438..>960668) 1 NC_009068.1 subunit of the ubiqunol-cytochrome c oxidoreductase complex >960668 QCR10 4851111 QCR10 Pichia stipitis CBS 6054 subunit of the ubiqunol-cytochrome c oxidoreductase complex XP_001387819.1 960438 R 322104 CDS PICST_80821 126274098 4851112 complement(961500..961886) 1 NC_009068.1 go_function: cofactor binding; mitochondrial acyl carrier protein 961886 ACP2 4851112 ACP2 Pichia stipitis CBS 6054 mitochondrial acyl carrier protein XP_001387820.1 961500 R 322104 CDS PICST_86106 126274099 4851113 962148..962681 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; conserved hypothetical protein 962681 MRP12 4851113 MRP12 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387420.1 962148 D 322104 CDS PICST_85872 126274100 4851114 complement(962903..963925) 1 NC_009068.1 go_component: cytoskeleton; go_process: regulation of actin filament polymerization; Arp complex subunit 963925 ARC35 4851114 ARC35 Pichia stipitis CBS 6054 Arp complex subunit XP_001387821.1 962903 R 322104 CDS PICST_80441 126274101 4851115 complement(965239..967059) 1 NC_009068.1 multidrug efflux protein 967059 YJQ3.2 4851115 YJQ3.2 Pichia stipitis CBS 6054 multidrug efflux protein XP_001387822.1 965239 R 322104 CDS PICST_28339 126274102 4851116 complement(967388..969067) 1 NC_009068.1 hypothetical protein 969067 4851116 PICST_28339 Pichia stipitis CBS 6054 hypothetical protein XP_001387823.1 967388 R 322104 CDS PICST_28340 126274103 4851117 complement(969415..971529) 1 NC_009068.1 Leucine rich repeat protein 971529 4851117 PICST_28340 Pichia stipitis CBS 6054 Leucine rich repeat protein XP_001387824.1 969415 R 322104 CDS PICST_37422 126274104 4851118 complement(972101..>974185) 1 NC_009068.1 phosphoryates SR family splicing factors; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine kinase >974185 SKY1 4851118 SKY1 Pichia stipitis CBS 6054 serine kinase XP_001387825.1 972101 R 322104 CDS PICST_80235 126274105 4851119 complement(975511..977601) 1 NC_009068.1 heat shock protein of HSP70 family 977601 SSE1 4851119 SSE1 Pichia stipitis CBS 6054 heat shock protein of HSP70 family XP_001387826.1 975511 R 322104 CDS PICST_80363 126274106 4851120 complement(978164..979897) 1 NC_009068.1 nuclear protein localization factor and ER translocation component 979897 NPL4 4851120 NPL4 Pichia stipitis CBS 6054 nuclear protein localization factor and ER translocation component XP_001387827.1 978164 R 322104 CDS PICST_28344 126274107 4851121 complement(join(981115..981624,981757..981816)) 1 NC_009068.1 predicted protein 981816 4851121 PICST_28344 Pichia stipitis CBS 6054 predicted protein XP_001387828.1 981115 R 322104 CDS PICST_52785 126274108 4851122 complement(983627..>984484) 1 NC_009068.1 transcription factor that binds to CRE motif >984484 HAC1 4851122 HAC1 Pichia stipitis CBS 6054 transcription factor that binds to CRE motif XP_001387829.1 983627 R 322104 CDS PICST_34206 126274109 4851123 987937..988941 1 NC_009068.1 protein involved in bud site selection 988941 BUD16 4851123 BUD16 Pichia stipitis CBS 6054 protein involved in bud site selection XP_001387421.1 987937 D 322104 CDS PICST_34207 126274110 4851124 989575..990630 1 NC_009068.1 Putative 2-dehydropantoate 2-reductase (Ketopantoate reductase) (KPA reductase) (KPR); go_function: 2-dehydropantoate 2-reductase activity; go_process: pyrimidine base metabolism; 2-dehydropantoate 2-reductase (Ketopantoate reductase) (KPA reductase) (KPR) 990630 KPR1 4851124 KPR1 Pichia stipitis CBS 6054 2-dehydropantoate 2-reductase (Ketopantoate reductase) (KPA reductase) (KPR) XP_001387422.1 989575 D 322104 CDS PICST_85911 126274111 4851125 complement(join(990705..990835,990956..992939)) 1 NC_009068.1 go_function: phosphotransferase activity, alcohol group as acceptor; phosphatidyl inositol kinase involved in actin organization 992939 LSB6 4851125 LSB6 Pichia stipitis CBS 6054 phosphatidyl inositol kinase involved in actin organization XP_001387830.1 990705 R 322104 CDS PICST_28349 126274112 4851126 complement(993696..994910) 1 NC_009068.1 hypothetical protein 994910 4851126 PICST_28349 Pichia stipitis CBS 6054 hypothetical protein XP_001387831.1 993696 R 322104 CDS PICST_37565 126274113 4851127 996094..997143 1 NC_009068.1 hypothetical protein 997143 4851127 PICST_37565 Pichia stipitis CBS 6054 hypothetical protein XP_001387423.1 996094 D 322104 CDS PICST_86239 126274114 4851128 complement(join(997517..1000200,1000261..1000468)) 1 NC_009068.1 go_component: membrane; go_function: transporter activity; go_process: sodium ion transport; phosphate permease 1000468 PHO87 4851128 PHO87 Pichia stipitis CBS 6054 phosphate permease XP_001387832.1 997517 R 322104 CDS PICST_66365 126274115 4851129 join(1002660..1002840,1003150..1005902) 1 NC_009068.1 highly conserved hypothetical protein Metalloexopeptidase; go_function: metallopeptidase activity; go_process: proteolysis and peptidolysis; Metalloexopeptidase 1005902 MXP1 4851129 MXP1 Pichia stipitis CBS 6054 Metalloexopeptidase XP_001387424.1 1002660 D 322104 CDS PICST_28353 126274116 4851130 complement(1006031..1007581) 1 NC_009068.1 hypothetical protein 1007581 4851130 PICST_28353 Pichia stipitis CBS 6054 hypothetical protein XP_001387833.1 1006031 R 322104 CDS PICST_37513 126274117 4851131 complement(join(1010222..1011049,1011146..1011147,1011418..>1011643)) 1 NC_009068.1 Sip5 facilitates the interaction between the Reg1Glc7 phosphatase and the Snf1 kinase; protein involved in nutrient responses 1011147 SIP5 4851131 SIP5 Pichia stipitis CBS 6054 protein involved in nutrient responses XP_001387834.1 1010222 R 322104 CDS PICST_66367 126274118 4851132 complement(1013764..1016448) 1 NC_009068.1 hypothetical protein 1016448 4851132 PICST_66367 Pichia stipitis CBS 6054 hypothetical protein XP_001387835.1 1013764 R 322104 CDS PICST_34211 126274119 4851133 complement(1018043..1019041) 1 NC_009068.1 opaque-phase-specific protein OP4 precursor 1019041 OPS4 4851133 OPS4 Pichia stipitis CBS 6054 opaque-phase-specific protein OP4 precursor XP_001387836.1 1018043 R 322104 CDS PICST_52157 126274120 4851134 complement(join(1019933..1019998,1020050..1021114)) 1 NC_009068.1 predicted protein 1021114 4851134 PICST_52157 Pichia stipitis CBS 6054 predicted protein XP_001387837.1 1019933 R 322104 CDS PICST_28358 126274121 4851135 complement(1021727..1022746) 1 NC_009068.1 RNA pol II transcription cofactor 1022746 PRN1 4851135 PRN1 Pichia stipitis CBS 6054 RNA pol II transcription cofactor XP_001387838.1 1021727 R 322104 CDS PICST_52120 126274122 4851136 complement(1023475..1024407) 1 NC_009068.1 trans-aconitate methyltransferase 1 1024407 TMT1 4851136 TMT1 Pichia stipitis CBS 6054 trans-aconitate methyltransferase 1 XP_001387839.1 1023475 R 322104 CDS PICST_28360 126274123 4851137 1025005..1026225 1 NC_009068.1 go_component: nucleus; go_function: damaged DNA binding; endonuclease activity; go_process: DNA repair; ssDNA endonuclease and repair protein 1026225 RAD10 4851137 RAD10 Pichia stipitis CBS 6054 ssDNA endonuclease and repair protein XP_001387425.1 1025005 D 322104 CDS PICST_39068 126274124 4851138 complement(1026366..1026842) 1 NC_009068.1 go_component: prefoldin complex; go_process: protein folding; subunit of tubulin prefoldin 1026842 GIM5 4851138 GIM5 Pichia stipitis CBS 6054 subunit of tubulin prefoldin XP_001387840.1 1026366 R 322104 CDS PICST_52289 126274125 4851139 1027051..1027761 1 NC_009068.1 predicted protein 1027761 4851139 PICST_52289 Pichia stipitis CBS 6054 predicted protein XP_001387426.1 1027051 D 322104 CDS PICST_28363 126274126 4851140 complement(1028794..1030587) 1 NC_009068.1 Chromatin structure remodeling complex protein RSC9 (Remodel the structure of chromatin complex subunit RSC9); chromatin remodeling protein 1030587 RSC9 4851140 RSC9 Pichia stipitis CBS 6054 chromatin remodeling protein XP_001387841.1 1028794 R 322104 CDS PICST_38351 126274127 4851141 1031886..1033394 1 NC_009068.1 go_function: serine carboxypeptidase activity; go_process: proteolysis and peptidolysis; carboxypeptidase C 1033394 CPY2 4851141 CPY2 Pichia stipitis CBS 6054 carboxypeptidase C XP_001387427.1 1031886 D 322104 CDS PICST_39042 126274128 4851142 complement(1033567..1035279) 1 NC_009068.1 go_component: membrane; go_process: transport; GABA-specific high-affinity permease 1035279 UGA4 4851142 UGA4 Pichia stipitis CBS 6054 GABA-specific high-affinity permease XP_001387842.1 1033567 R 322104 CDS PICST_66370 126274129 4851143 join(1036527..1036534,1036958..1037048,1037260..1037886) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S large subunit ribosomal protein 1037886 RPL7B 4851143 RPL7B Pichia stipitis CBS 6054 60S large subunit ribosomal protein XP_001387428.1 1036527 D 322104 CDS PICST_28367 126274130 4851144 complement(1038085..1039371) 1 NC_009068.1 myosin-like protein 1039371 MLP2 4851144 MLP2 Pichia stipitis CBS 6054 myosin-like protein XP_001387843.1 1038085 R 322104 CDS PICST_85882 126274131 4851145 complement(join(1039800..1044348,1044622..1045172)) 1 NC_009068.1 go_component: intracellular; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; protein involved in cell wall biogenesis and architecture 1045172 ECM5 4851145 ECM5 Pichia stipitis CBS 6054 protein involved in cell wall biogenesis and architecture XP_001387844.1 1039800 R 322104 CDS PICST_66372 126274132 4851146 complement(1046369..1046773) 1 NC_009068.1 hypothetical protein 1046773 4851146 PICST_66372 Pichia stipitis CBS 6054 hypothetical protein XP_001387845.1 1046369 R 322104 CDS PICST_34219 126274133 4851147 complement(join(1048984..1049369,1049509..1049542)) 1 NC_009068.1 Autophagy-related protein 8 precursor (Autophagy-related ubiquitin-like modifier ATG8) 1049542 ATG8 4851147 ATG8 Pichia stipitis CBS 6054 Autophagy-related protein 8 precursor (Autophagy-related ubiquitin-like modifier ATG8) XP_001387846.1 1048984 R 322104 CDS PICST_80863 126274134 4851148 1051037..1051441 1 NC_009068.1 Single-stranded DNA-binding protein RIM1, mitochondrial precursor (ssDNA-binding protein, mitochondrial); go_function: single-stranded DNA binding; putative telomere binding protein 1051441 RIM1 4851148 RIM1 Pichia stipitis CBS 6054 putative telomere binding protein XP_001387429.1 1051037 D 322104 CDS PICST_28372 126274135 4851149 complement(1051693..1052916) 1 NC_009068.1 Aminopeptidase putative leucyl aminopeptidase precursor; go_function: peptidase activity; go_process: proteolysis and peptidolysis; leucyl aminopeptidase precursor 1052916 APE3.2 4851149 APE3.2 Pichia stipitis CBS 6054 leucyl aminopeptidase precursor XP_001387847.1 1051693 R 322104 CDS PICST_66374 126274136 4851150 1053769..1058106 1 NC_009068.1 go_component: nuclear pore; go_function: nucleocytoplasmic transporter activity; go_process: nucleocytoplasmic transport; nuclear pore complex subunit 1058106 NUP170 4851150 NUP170 Pichia stipitis CBS 6054 nuclear pore complex subunit XP_001387430.1 1053769 D 322104 CDS PICST_38895 126274137 4851151 complement(1058208..1058987) 1 NC_009068.1 Uridine kinase (Uridine monophosphokinase) (Cytidine monophosphokinase); go_function: ATP binding; kinase activity; go_process: biosynthesis; Uridine kinase (Uridine monophosphokinase) conserved hypothetical protein 1058987 URK2 4851151 URK2 Pichia stipitis CBS 6054 Uridine kinase (Uridine monophosphokinase) conserved hypothetical protein XP_001387848.1 1058208 R 322104 CDS PICST_52941 126274138 4851152 1059236..1060435 1 NC_009068.1 go_function: nucleic acid binding; helicase activity; ATP binding; RNA helicase involved in maturation of 18S rRNA 1060435 FAL1 4851152 FAL1 Pichia stipitis CBS 6054 RNA helicase involved in maturation of 18S rRNA XP_001387431.1 1059236 D 322104 CDS PICST_69154 126274139 4851153 1060960..1064271 1 NC_009068.1 Karyopherin of predicted MW 122.524 Da. Similar to Kap95p (YLR347C) and Kap104p *YBR017C). Ran binding protein, Homolog of importin-beta; go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; ran binding protein 1064271 KAP123 4851153 KAP123 Pichia stipitis CBS 6054 ran binding protein XP_001387432.1 1060960 D 322104 CDS PICST_37890 126274140 4851154 1064893..>1065792 1 NC_009068.1 a-factor receptor The a factor receptor encoded by the STE3 gene allows yeast cells of the Alpha mating type to recognize cells of the a mating type; go_component: membrane; go_function: mating-type factor pheromone receptor activity; a-factor receptor >1065792 STE3 4851154 STE3 Pichia stipitis CBS 6054 a-factor receptor XP_001387433.1 1064893 D 322104 CDS PICST_52015 126274141 4851155 complement(1066287..1067813) 1 NC_009068.1 May serve important general function in mitochondrial gene expression, probably in translation required for translation of COX2 mRNA [S. cerevisiae]; go_function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor; ligase activity; go_process: protein biosynthesis; glutamyl-tRNA (Gln) amidotransferase subunit B (PET112) 1067813 PET112 4851155 PET112 Pichia stipitis CBS 6054 glutamyl-tRNA (Gln) amidotransferase subunit B (PET112) XP_001387849.1 1066287 R 322104 CDS PICST_51333 126274142 4851156 complement(join(1068675..1069123,1069239..1069281)) 1 NC_009068.1 go_component: riboflavin synthase complex; go_function: riboflavin synthase activity; go_process: riboflavin biosynthesis; 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) 1069281 RIB4 4851156 RIB4 Pichia stipitis CBS 6054 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) XP_001387850.1 1068675 R 322104 CDS PICST_28380 126274143 4851157 1071192..1072331 1 NC_009068.1 predicted protein 1072331 4851157 PICST_28380 Pichia stipitis CBS 6054 predicted protein XP_001387434.1 1071192 D 322104 CDS PICST_80530 126274144 4851158 join(1076205..1076214,1076366..1077861) 1 NC_009068.1 go_component: membrane; go_function: protein translocase activity; go_process: protein secretion; protein involved in co-translational pathway of protein transport 1077861 SSH1 4851158 SSH1 Pichia stipitis CBS 6054 protein involved in co-translational pathway of protein transport XP_001387435.1 1076205 D 322104 CDS PICST_80414 126274145 4851159 complement(join(1078879..1078968,1079002..1079151,1079203..1079240,1079265..1081338)) 1 NC_009068.1 potential fungal Zn(2)-Cys(6) binuclear cluster domain; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; MADS box transcription factor 1081338 MBT1 4851159 MBT1 Pichia stipitis CBS 6054 MADS box transcription factor XP_001387851.1 1078879 R 322104 CDS PICST_52636 126274146 4851160 join(1082445..1082920,1082951..1083167) 1 NC_009068.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein of the rab family 1083167 YPT53 4851160 YPT53 Pichia stipitis CBS 6054 GTP-binding protein of the rab family XP_001387436.1 1082445 D 322104 CDS PICST_52420 126274147 4851161 complement(join(1083392..1083504,1083523..1083619,1083650..1085034,1085068..1085290)) 1 NC_009068.1 TRF5 homolog Involved in mitotic chromsome condensation associates with Smc1p and Smc2p; go_function: nucleotidyltransferase activity; topoisomerase I-related protein 1085290 TRF4 4851161 TRF4 Pichia stipitis CBS 6054 topoisomerase I-related protein XP_001387852.1 1083392 R 322104 CDS PICST_38111 126274148 4851162 complement(<1085937..1087661) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; kinase suppressor of Ira1 1087661 IKS1 4851162 IKS1 Pichia stipitis CBS 6054 kinase suppressor of Ira1 XP_001387853.1 <1085937 R 322104 CDS PICST_28386 126274149 4851163 complement(1088057..1093147) 1 NC_009068.1 RAP1-interacting factor, involved in establishment of repressed chromatin 1093147 RIF1 4851163 RIF1 Pichia stipitis CBS 6054 RAP1-interacting factor, involved in establishment of repressed chromatin XP_001387854.1 1088057 R 322104 CDS PICST_37730 126274150 4851164 complement(join(<1093822..1095447,1095550..>1095822)) 1 NC_009068.1 Troponin; hypothetical protein 1095447 4851164 PICST_37730 Pichia stipitis CBS 6054 hypothetical protein XP_001387855.1 <1093822 R 322104 CDS PICST_28388 126274151 4851165 complement(1096265..1096903) 1 NC_009068.1 go_function: translation release factor activity; go_process: translational termination; conserved hypothetical protein 1096903 4851165 PICST_28388 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387856.1 1096265 R 322104 CDS PICST_52530 126274152 4851166 complement(1097220..1097720) 1 NC_009068.1 Peroxiredoxin; putative thioredoxin peroxidase 1097720 PRX1 4851166 PRX1 Pichia stipitis CBS 6054 putative thioredoxin peroxidase XP_001387857.1 1097220 R 322104 CDS PICST_52382 126274153 4851167 1098281..1098829 1 NC_009068.1 decapping protein involved in mRNA Degradation 1098829 DCP1 4851167 DCP1 Pichia stipitis CBS 6054 decapping protein involved in mRNA Degradation XP_001387437.1 1098281 D 322104 CDS PICST_66379 126274154 4851168 1099440..1100684 1 NC_009068.1 hypothetical protein occurs in multiple copies through genome; hypothetical protein occurs 10 times in genome 1100684 HMC2 4851168 HMC2 Pichia stipitis CBS 6054 hypothetical protein occurs 10 times in genome XP_001387438.1 1099440 D 322104 CDS PICST_28392 126274155 4851169 join(1101228..1101306,1101344..1101410,1101767..1102941,1102980..1103089) 1 NC_009068.1 Putative RNA polymerase integrase domain; putative RNA-directed DNA polymerase 1103089 POL5.5 4851169 POL5.5 Pichia stipitis CBS 6054 putative RNA-directed DNA polymerase XP_001387439.1 1101228 D 322104 CDS PICST_28393 126274156 4851170 1105477..1107840 1 NC_009068.1 histone acetyltransferase SAGA complex member 1107840 SPT20 4851170 SPT20 Pichia stipitis CBS 6054 histone acetyltransferase SAGA complex member XP_001387440.1 1105477 D 322104 CDS PICST_28394 126274157 4851171 complement(1108269..1109819) 1 NC_009068.1 hypothetical protein 1109819 4851171 PICST_28394 Pichia stipitis CBS 6054 hypothetical protein XP_001387858.1 1108269 R 322104 CDS PICST_74320 126274158 4851172 join(1111391..1112696,1112778..1115671) 1 NC_009068.1 Kontroller Of Growth 175.8 kDa Trp-Asp repeats containing protein in GND1-IKI1 intergenic region; Kontroller Of Growth 1115671 KOG1 4851172 KOG1 Pichia stipitis CBS 6054 Kontroller Of Growth XP_001387441.1 1111391 D 322104 CDS PICST_66382 126274159 4851173 join(1116239..1116559,1116626..1117471) 1 NC_009068.1 go_component: membrane; go_function: binding; go_process: transport; membrane transporter, Mitochondrial Carrier Family 1117471 MTM1 4851173 MTM1 Pichia stipitis CBS 6054 membrane transporter, Mitochondrial Carrier Family XP_001387442.1 1116239 D 322104 CDS PICST_12325 126274160 4851174 complement(<1118111..>1118683) 1 NC_009068.1 hypothetical protein >1118683 4851174 PICST_12325 Pichia stipitis CBS 6054 hypothetical protein XP_001387859.1 <1118111 R 322104 CDS PICST_37814 126274161 4851175 complement(1119231..1119968) 1 NC_009068.1 hypothetical protein 1119968 4851175 PICST_37814 Pichia stipitis CBS 6054 hypothetical protein XP_001387860.1 1119231 R 322104 CDS PICST_86479 126274162 4851176 1120636..1122762 1 NC_009068.1 mitochondrial ribosome small subunit component 1122762 RSM22 4851176 RSM22 Pichia stipitis CBS 6054 mitochondrial ribosome small subunit component XP_001387443.1 1120636 D 322104 CDS PICST_66384 126274163 4851177 complement(1123341..1123589) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein S27 1123589 RPS27 4851177 RPS27 Pichia stipitis CBS 6054 ribosomal protein S27 XP_001387861.1 1123341 R 322104 CDS PICST_28401 126274164 4851178 join(1125808..1127625,1127656..>1127676) 1 NC_009068.1 hypothetical protein 1127625 4851178 PICST_28401 Pichia stipitis CBS 6054 hypothetical protein XP_001387444.1 1125808 D 322104 CDS PICST_52347 126274165 4851179 1128962..1130056 1 NC_009068.1 hypothetical protein 1130056 4851179 PICST_52347 Pichia stipitis CBS 6054 hypothetical protein XP_001387445.1 1128962 D 322104 CDS PICST_74521 126274166 4851180 join(1130608..1130870,1130961..1131259,1131401..1131753,1131775..1132014,1132033..1132165,1132220..1132755) 1 NC_009068.1 involved in biosynthetic pathway for cell wall beta-glucans; Beta-glucan synthesis-associated protein KRE11 (Killer toxin-resistance protein 11); KRE11-like protein 1132755 KRE11 4851180 KRE11 Pichia stipitis CBS 6054 KRE11-like protein XP_001387446.1 1130608 D 322104 CDS PICST_28404 126274167 4851181 1134745..1136808 1 NC_009068.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; saccharolysin (oligopeptidase) 1136808 PRD1.2 4851181 PRD1.2 Pichia stipitis CBS 6054 saccharolysin (oligopeptidase) XP_001387447.1 1134745 D 322104 CDS PICST_64855 126274168 4851182 complement(1136945..1138930) 1 NC_009068.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; protein biosynthesis; cyl-tRNA synthase 1138930 GRS1 4851182 GRS1 Pichia stipitis CBS 6054 cyl-tRNA synthase XP_001387862.1 1136945 R 322104 CDS PICST_52278 126274169 4851183 complement(1139643..1141283) 1 NC_009068.1 probable flavin-containing monooxygenase 1141283 FMO3 4851183 FMO3 Pichia stipitis CBS 6054 probable flavin-containing monooxygenase XP_001387863.1 1139643 R 322104 CDS PICST_80360 126274170 4851184 complement(join(1142197..1143168,1143187..1143326,1143378..1144149)) 1 NC_009068.1 Predicted G-protein coupled receptor 1144149 YHN8 4851184 YHN8 Pichia stipitis CBS 6054 Predicted G-protein coupled receptor XP_001387864.1 1142197 R 322104 CDS PICST_86481 126274171 4851185 1144680..1145405 1 NC_009068.1 Involved in mitochondrial homologous DNA recombination. Binds to activation domains of acidic activators. Presence in RNA pol II holoenzyme may help recruit an Ssn3-active form of the holoenzyme to target promoters.; protein involved in mitochondrial homologous DNA recombination 1145405 MHR1 4851185 MHR1 Pichia stipitis CBS 6054 protein involved in mitochondrial homologous DNA recombination XP_001387448.1 1144680 D 322104 CDS PICST_52735 126274172 4851186 join(1146639..1146729,1146832..1146902,1147164..1147386,1147468..>1148855) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; SIN3 binding protein 1147386 STB6 4851186 STB6 Pichia stipitis CBS 6054 SIN3 binding protein XP_001387449.1 1146639 D 322104 CDS PICST_75017 126274173 4851187 1150028..1151368 1 NC_009068.1 go_function: ATP binding; protease subunit component 1151368 RPT1 4851187 RPT1 Pichia stipitis CBS 6054 protease subunit component XP_001387450.1 1150028 D 322104 CDS PICST_34242 126274174 4851188 complement(1151714..1152304) 1 NC_009068.1 go_function: DNA-directed RNA polymerase activity; go_process: transcription; subunit of RNA polymerase III 1152304 RPC25 4851188 RPC25 Pichia stipitis CBS 6054 subunit of RNA polymerase III XP_001387865.1 1151714 R 322104 CDS PICST_13471 126274175 4851189 <1152696..>1153190 1 NC_009068.1 RNA-binding protein >1153190 YDB2 4851189 YDB2 Pichia stipitis CBS 6054 RNA-binding protein XP_001387451.1 <1152696 D 322104 CDS PICST_28414 126274176 4851190 1153707..1154840 1 NC_009068.1 hypothetical protein 1154840 4851190 PICST_28414 Pichia stipitis CBS 6054 hypothetical protein XP_001387452.1 1153707 D 322104 CDS PICST_28415 126274177 4851191 1155413..1157446 1 NC_009068.1 many repeats in Pichia stipitis no similarity to other proteins; many repeats in P. stipitis; no similarity to other proteins; hypothetical protein 1157446 4851191 PICST_28415 Pichia stipitis CBS 6054 hypothetical protein XP_001387453.1 1155413 D 322104 CDS PICST_66392 126274178 4851192 join(1159005..1159115,1159140..1159274,1159338..1159904) 1 NC_009068.1 Transcription factor of the Forkhead/HNF3 family; hypothetical protein 1159904 FKH3 4851192 FKH3 Pichia stipitis CBS 6054 hypothetical protein XP_001387454.1 1159005 D 322104 CDS PICST_66393 126274179 4851193 complement(1160821..1161921) 1 NC_009068.1 potential CUE domain protein (found in proteins involved in binding ubiquitin- conjugating enzymes and those in the IL1 signal transduction pathway) 1161921 CUE5 4851193 CUE5 Pichia stipitis CBS 6054 potential CUE domain protein (found in proteins involved in binding ubiquitin- conjugating enzymes and those in the IL1 signal transduction pathway) XP_001387866.1 1160821 R 322104 CDS PICST_69376 126274180 4851194 complement(join(1163367..1163593,1163685..1163712)) 1 NC_009068.1 NADH-ubiquinone oxidoreductase B18 subunit (Complex I-B18) (Bovine) (NB8M) (CI-B18); NADH-ubiquinone oxidoreductase B18 subunit (Complex I-B18) (CI-B18) 1163712 NBM8 4851194 NBM8 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase B18 subunit (Complex I-B18) (CI-B18) XP_001387867.1 1163367 R 322104 CDS PICST_80638 126274181 4851195 complement(join(1164514..1164707,1164795..1164837)) 1 NC_009068.1 hypothetical protein 1164837 4851195 PICST_80638 Pichia stipitis CBS 6054 hypothetical protein XP_001387868.1 1164514 R 322104 CDS PICST_80055 126274182 4851196 join(1171143..1171422,1171588..>1171964) 1 NC_009068.1 GATA-4/5/6 transcription factors; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; GATA-family DNA binding protein 1171422 GAT3 4851196 GAT3 Pichia stipitis CBS 6054 GATA-family DNA binding protein XP_001387455.1 1171143 D 322104 CDS PICST_39206 126274183 4851197 complement(1175297..1176388) 1 NC_009068.1 CDP-alcohol phosphatidyltransferase predicted phosphatidyl synthase; predicted phosphatidyl synthase 1176388 PDT1 4851197 PDT1 Pichia stipitis CBS 6054 predicted phosphatidyl synthase XP_001387869.1 1175297 R 322104 CDS PICST_51733 126274184 4851198 complement(join(1177086..1177747,1177799..1178357)) 1 NC_009068.1 go_component: membrane; vacuolar CLN3 homolog involved in pH homeostasis 1178357 YHC3 4851198 YHC3 Pichia stipitis CBS 6054 vacuolar CLN3 homolog involved in pH homeostasis XP_001387870.1 1177086 R 322104 CDS PICST_80434 126274185 4851199 1180634..1181731 1 NC_009068.1 go_process: biosynthesis; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase isoenzyme 1181731 ARO4 4851199 ARO4 Pichia stipitis CBS 6054 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase isoenzyme XP_001387456.1 1180634 D 322104 CDS PICST_28422 126274186 4851200 complement(1181931..1182716) 1 NC_009068.1 conserved hypothetical protein 1182716 4851200 PICST_28422 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387871.1 1181931 R 322104 CDS PICST_51237 126274187 4851201 complement(1183184..>1184074) 1 NC_009068.1 conserved hypothetical integral membrane protein; go_component: integral to membrane; hemolysin III domain membrane protein >1184074 HTD1 4851201 HTD1 Pichia stipitis CBS 6054 hemolysin III domain membrane protein XP_001387872.1 1183184 R 322104 CDS PICST_51037 126274188 4851202 complement(1184579..1186324) 1 NC_009068.1 go_function: acetylglutamate kinase activity; go_process: arginine biosynthesis; acetylglutamate synthase 1186324 ARG2 4851202 ARG2 Pichia stipitis CBS 6054 acetylglutamate synthase XP_001387873.1 1184579 R 322104 CDS PICST_28425 126274189 4851203 complement(1186710..1187165) 1 NC_009068.1 replication complex GINS protein PSF2 (Partner of Sld five 2) subunit of GINS complex required for chromosomal DNA replication; subunit of GINS complex required for chromosomal DNA replication 1187165 PSF2 4851203 PSF2 Pichia stipitis CBS 6054 subunit of GINS complex required for chromosomal DNA replication XP_001387874.1 1186710 R 322104 CDS PICST_68661 126274190 4851204 complement(1188729..1191107) 1 NC_009068.1 go_component: intracellular; go_function: nucleic acid binding; 3'-5' exonuclease activity; ribosomal RNA processing 3'-5' exonuclease 1191107 RRP6 4851204 RRP6 Pichia stipitis CBS 6054 ribosomal RNA processing 3'-5' exonuclease XP_001387875.1 1188729 R 322104 CDS PICST_52198 126274191 4851205 1191379..1192617 1 NC_009068.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zinc finger protein with unknown function 1192617 4851205 PICST_52198 Pichia stipitis CBS 6054 zinc finger protein with unknown function XP_001387457.1 1191379 D 322104 CDS PICST_86507 126274192 4851206 complement(1192749..1195454) 1 NC_009068.1 Local Anesthetics Sensitive: involved in the attachment of glycosylphosphatidylinositol (GPI) anchors to proteins.; major facilitator superfamily involved in the attachment of glycosylphosphatidylinositol (GPI) anchors to proteins 1195454 LAS21 4851206 LAS21 Pichia stipitis CBS 6054 major facilitator superfamily involved in the attachment of glycosylphosphatidylinositol (GPI) anchors to proteins XP_001387876.1 1192749 R 322104 CDS PICST_28429 126274193 4851207 1196174..1197472 1 NC_009068.1 N-carbamoyl-L-amino acid hydrolase (L-carbamoylase) (bacterial geobacillus); go_function: metallopeptidase activity; go_process: proteolysis and peptidolysis; beta alanine synthase 1197472 AMB1 4851207 AMB1 Pichia stipitis CBS 6054 beta alanine synthase XP_001387458.1 1196174 D 322104 CDS PICST_52700 126274194 4851208 <1199569..>1201182 1 NC_009068.1 go_component: membrane; go_process: transport; GABA/polyamine transporter >1201182 GPT1 4851208 GPT1 Pichia stipitis CBS 6054 GABA/polyamine transporter XP_001387459.1 <1199569 D 322104 CDS PICST_38818 126274195 4851209 1201743..>1202294 1 NC_009068.1 go_function: nucleic acid binding; Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor 23 kDa subunit) (U2 snRNP auxiliary factor small subunit) (U2AF23) >1202294 UTAF1 4851209 UTAF1 Pichia stipitis CBS 6054 Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor 23 kDa subunit) (U2 snRNP auxiliary factor small subunit) (U2AF23) XP_001387460.1 1201743 D 322104 CDS PICST_37588 126274196 4851210 1203485..1204777 1 NC_009068.1 go_component: membrane; go_function: cation transporter activity; go_process: cation transport; mitochondrial protein with role in iron accumulation 1204777 MMT2 4851210 MMT2 Pichia stipitis CBS 6054 mitochondrial protein with role in iron accumulation XP_001387461.1 1203485 D 322104 CDS PICST_80259 126274197 4851211 complement(join(1204948..1205164,1205198..1206497,1206705..1208916)) 1 NC_009068.1 Eukaryotic translation initiation factor 3 135 kDa subunit (eIF3 p135) (Translation initiation factor eIF3, p135 subunit); accessory factor to EIF3 1208916 CLU1 4851211 CLU1 Pichia stipitis CBS 6054 accessory factor to EIF3 XP_001387877.1 1204948 R 322104 CDS PICST_51322 126274198 4851212 join(1209774..1211664,1211722..1211773,1211846..1211924) 1 NC_009068.1 F-box ubiquitin ligase 1211924 UFO1 4851212 UFO1 Pichia stipitis CBS 6054 F-box ubiquitin ligase XP_001387462.1 1209774 D 322104 CDS PICST_34257 126274199 4851213 join(1213279..1213761,1213828..1213866,1213936..1216887,1216924..1217268) 1 NC_009068.1 involved in processing of mitochondrial precursor tRNAs and protein import; RNase P subunit 1217268 RPM2 4851213 RPM2 Pichia stipitis CBS 6054 RNase P subunit XP_001387463.1 1213279 D 322104 CDS PICST_86084 126274200 4851214 1217813..1218814 1 NC_009068.1 methyltransferase 1218814 4851214 PICST_86084 Pichia stipitis CBS 6054 methyltransferase XP_001387464.1 1217813 D 322104 CDS PICST_52586 126274201 4851215 complement(1218931..1221210) 1 NC_009068.1 mannosyltransferase 1221210 MNT43 4851215 MNT43 Pichia stipitis CBS 6054 mannosyltransferase XP_001387878.1 1218931 R 322104 CDS PICST_85807 126274202 4851216 complement(1222181..1223371) 1 NC_009068.1 go_function: GTP binding; molecular function unknown; Predicted GTP-binding protein (ODN superfamily) 1223371 YBN5 4851216 YBN5 Pichia stipitis CBS 6054 Predicted GTP-binding protein (ODN superfamily) XP_001387879.1 1222181 R 322104 CDS PICST_37824 126274203 4851217 1223841..1224164 1 NC_009068.1 similar to mitochondrial/chloroplast ribosomal protein L54/L37; ribosomal protein L54/L37-like protein 1224164 MRL37 4851217 MRL37 Pichia stipitis CBS 6054 ribosomal protein L54/L37-like protein XP_001387465.1 1223841 D 322104 CDS PICST_39213 126274204 4851218 complement(join(1224409..1224842,1225596..>1226169)) 1 NC_009068.1 go_function: pepsin A activity; go_process: proteolysis and peptidolysis; secreted aspartyl proteinase 1224842 SAP7 4851218 SAP7 Pichia stipitis CBS 6054 secreted aspartyl proteinase XP_001387880.1 1224409 R 322104 CDS PICST_66402 126274205 4851219 complement(join(1227678..1229999,1230084..1230200)) 1 NC_009068.1 Myosin class V heavy chain 1230200 MYO12 4851219 MYO12 Pichia stipitis CBS 6054 Myosin class V heavy chain XP_001387881.1 1227678 R 322104 CDS PICST_38534 126274206 4851220 1233032..1233769 1 NC_009068.1 Cation-independent mannose-6-phosphate receptor CI-MPR 1233769 MRL1 4851220 MRL1 Pichia stipitis CBS 6054 Cation-independent mannose-6-phosphate receptor CI-MPR XP_001387466.1 1233032 D 322104 CDS PICST_74925 126274207 4851221 complement(1234121..1236928) 1 NC_009068.1 coatomer gamma non-clathrin coat protein involved in transport between ER and Golgi 1236928 SEC21 4851221 SEC21 Pichia stipitis CBS 6054 coatomer gamma non-clathrin coat protein involved in transport between ER and Golgi XP_001387882.1 1234121 R 322104 CDS PICST_28444 126274208 4851222 1237345..1237593 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; mitochondrial ribosomal L36 protein 1237593 GON5 4851222 GON5 Pichia stipitis CBS 6054 mitochondrial ribosomal L36 protein XP_001387467.1 1237345 D 322104 CDS PICST_80108 126274209 4851223 complement(join(1237988..1238649,1238671..1239009,1239106..1239311,1239363..1239585,1239940..1240546)) 1 NC_009068.1 predicted protein 1240546 4851223 PICST_80108 Pichia stipitis CBS 6054 predicted protein XP_001387883.1 1237988 R 322104 CDS PICST_51970 126274210 4851224 1244002..1246128 1 NC_009068.1 go_function: hydrolase activity; sphingomyelin phosphodiesterase 1246128 IFP3 4851224 IFP3 Pichia stipitis CBS 6054 sphingomyelin phosphodiesterase XP_001387468.1 1244002 D 322104 CDS PICST_51444 126274211 4851225 1248091..1249365 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; taurine catabolism dioxygenase 1249365 TCD5.2 4851225 TCD5.2 Pichia stipitis CBS 6054 taurine catabolism dioxygenase XP_001387469.1 1248091 D 322104 CDS PICST_37507 126274212 4851226 complement(<1249597..1250097) 1 NC_009068.1 small subunit of the nuclear mRNA cap-binding protein complex CBC 1250097 CBC2 4851226 CBC2 Pichia stipitis CBS 6054 small subunit of the nuclear mRNA cap-binding protein complex CBC XP_001387884.1 <1249597 R 322104 CDS PICST_80289 126274213 4851227 join(1250723..1252805,1252863..1253189,1253232..1253353) 1 NC_009068.1 Serine/threonine protein kinase suppressor of GTPase mutant; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Suppressor of GTPase mutant 1253353 SCY1 4851227 SCY1 Pichia stipitis CBS 6054 Suppressor of GTPase mutant XP_001387470.1 1250723 D 322104 CDS PICST_28450 126274214 4851228 1254518..1255627 1 NC_009068.1 go_function: catalytic activity; go_process: metabolism; C-5 sterol desaturase (Sterol-C5-desaturase) (Ergosterol delta 5,6 desaturase) 1255627 ERG3 4851228 ERG3 Pichia stipitis CBS 6054 C-5 sterol desaturase (Sterol-C5-desaturase) (Ergosterol delta 5,6 desaturase) XP_001387471.1 1254518 D 322104 CDS PICST_52351 126274215 4851229 1257430..1259604 1 NC_009068.1 go_component: membrane; go_function: transporter activity; go_process: transport; urea active transport protein 1259604 DUR3.1 4851229 DUR3.1 Pichia stipitis CBS 6054 urea active transport protein XP_001387472.1 1257430 D 322104 CDS PICST_28452 126274216 4851230 1261639..1267107 1 NC_009068.1 Urea amidolyase (contains urea carboxylase and allophanate hydrolase); go_function: ligase activity; amidase activity; ATP binding; go_process: metabolism; urea amidolyase 1267107 DUR1 4851230 DUR1 Pichia stipitis CBS 6054 urea amidolyase XP_001387473.1 1261639 D 322104 CDS PICST_52077 126274217 4851231 join(1267417..1267980,1267993..>1268574) 1 NC_009068.1 histone acetyltransferase type b subunit; histone acetyltransferase subunit 1267980 HAT1 4851231 HAT1 Pichia stipitis CBS 6054 histone acetyltransferase subunit XP_001387474.1 1267417 D 322104 CDS PICST_75064 126274218 4851232 1269852..1270775 1 NC_009068.1 PIL1; Long chain base Stimulates Phosphorylation 1270775 LSP1 4851232 LSP1 Pichia stipitis CBS 6054 Long chain base Stimulates Phosphorylation XP_001387475.1 1269852 D 322104 CDS PICST_28455 126274219 4851233 complement(1271493..1273349) 1 NC_009068.1 sporulation protein involved in sister chromatid cohesion 1273349 SPO69 4851233 SPO69 Pichia stipitis CBS 6054 sporulation protein involved in sister chromatid cohesion XP_001387885.1 1271493 R 322104 CDS PICST_80203 126274220 4851234 complement(join(1273675..1274694,1274782..1276452)) 1 NC_009068.1 go_function: peptidase activity; go_process: proteolysis and peptidolysis; vacuolar targeting protein 1276452 VPS72 4851234 VPS72 Pichia stipitis CBS 6054 vacuolar targeting protein XP_001387886.1 1273675 R 322104 CDS PICST_34273 126274221 4851235 complement(1283750..1284289) 1 NC_009068.1 ribosome assembly protein 1284289 RSA3 4851235 RSA3 Pichia stipitis CBS 6054 ribosome assembly protein XP_001387887.1 1283750 R 322104 CDS PICST_86186 126274222 4851236 join(1284658..1284671,1284733..1285708) 1 NC_009068.1 Ribosome biogenesis protein RPF2 1285708 RPF2 4851236 RPF2 Pichia stipitis CBS 6054 Ribosome biogenesis protein RPF2 XP_001387476.1 1284658 D 322104 CDS PICST_66409 126274223 4851237 1286086..1289538 1 NC_009068.1 go_component: nuclear pore; go_function: transporter activity; go_process: RNA transport; Nuclear pore complex protein involved in poly(A)+ RNA transport, nuclear pore distribution, and possibly in the biogenesis of functional tRNA 1289538 NUP133 4851237 NUP133 Pichia stipitis CBS 6054 Nuclear pore complex protein involved in poly(A)+ RNA transport, nuclear pore distribution, and possibly in the biogenesis of functional tRNA XP_001387477.1 1286086 D 322104 CDS PICST_52747 126274224 4851238 complement(1289764..1290180) 1 NC_009068.1 predicted protein 1290180 4851238 PICST_52747 Pichia stipitis CBS 6054 predicted protein XP_001387888.1 1289764 R 322104 CDS PICST_28461 126274225 4851239 1290625..>1292094 1 NC_009068.1 predicted protein >1292094 4851239 PICST_28461 Pichia stipitis CBS 6054 predicted protein XP_001387478.1 1290625 D 322104 CDS PICST_37780 126274226 4851240 complement(1292240..1293190) 1 NC_009068.1 Thymidylate synthase (TS)(TSase)(TYSY); go_function: thymidylate synthase activity; go_process: dTMP biosynthesis; Thymidylate synthase 1293190 TMP1 4851240 TMP1 Pichia stipitis CBS 6054 Thymidylate synthase XP_001387889.1 1292240 R 322104 CDS PICST_34276 126274227 4851241 complement(1293726..1294400) 1 NC_009068.1 go_function: catalytic activity; predicted protein 1294400 4851241 PICST_34276 Pichia stipitis CBS 6054 predicted protein XP_001387890.1 1293726 R 322104 CDS PICST_52686 126274228 4851242 complement(1294964..1295317) 1 NC_009068.1 Thioredoxin Posttranslational modification, protein turnover, chaperones; go_function: electron transporter activity; go_process: electron transport; thioredoxin 1295317 TRX3 4851242 TRX3 Pichia stipitis CBS 6054 thioredoxin XP_001387891.1 1294964 R 322104 CDS PICST_80365 126274229 4851243 join(1296028..1296267,1296310..1298109) 1 NC_009068.1 go_function: RNA binding; Puf family RNA-binding protein Translation, ribosomal structure and biogenesis 1298109 PUF6 4851243 PUF6 Pichia stipitis CBS 6054 Puf family RNA-binding protein Translation, ribosomal structure and biogenesis XP_001387479.1 1296028 D 322104 CDS PICST_34278 126274230 4851244 complement(join(1298235..1298323,1298345..1299455)) 1 NC_009068.1 peroxisome assembly protein (Peroxin-2) 1299455 PEX2 4851244 PEX2 Pichia stipitis CBS 6054 peroxisome assembly protein (Peroxin-2) XP_001387892.1 1298235 R 322104 CDS PICST_37961 126274231 4851245 complement(1299927..>1302830) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; protein kinase potentially involved in septation during cytokinesis >1302830 CDC15 4851245 CDC15 Pichia stipitis CBS 6054 protein kinase potentially involved in septation during cytokinesis XP_001387893.1 1299927 R 322104 CDS PICST_28468 126274232 4851246 complement(1304044..1305132) 1 NC_009068.1 quinone oxidoreductase (QOR2); go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; quinone oxidoreductase 1305132 YMN1 4851246 YMN1 Pichia stipitis CBS 6054 quinone oxidoreductase XP_001387894.1 1304044 R 322104 CDS PICST_74654 126274233 4851247 complement(1305693..1306787) 1 NC_009068.1 predicted quinone oxidoreductase similar to ScYML131W; go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; quinone oxidoreductase 1306787 QOR1 4851247 QOR1 Pichia stipitis CBS 6054 quinone oxidoreductase XP_001387895.1 1305693 R 322104 CDS PICST_34280 126274234 4851248 complement(1307647..1308966) 1 NC_009068.1 plays an important role in phospholipid translocation across the plasma membrane. (CDC50) cell division cycle mutant; go_component: membrane; go_function: molecular function unknown; role in phospholipid translocation across the plasma membrane 1308966 LEM3 4851248 LEM3 Pichia stipitis CBS 6054 role in phospholipid translocation across the plasma membrane XP_001387896.1 1307647 R 322104 CDS PICST_80337 126274235 4851249 1310118..1311428 1 NC_009068.1 Recessive omnipotent suppressor. The wild-type gene functions in termination of translation.; transcriptional release factor (ERF1) 1311428 SUP45 4851249 SUP45 Pichia stipitis CBS 6054 transcriptional release factor (ERF1) XP_001387480.1 1310118 D 322104 CDS PICST_28472 126274236 4851250 complement(1311668..1314178) 1 NC_009068.1 Necessary for maintenance of dsRNA killer plasmids; Necessary for maintenance of dsRNA killer plasmids. Is predicted to encode an DEAD-box RNA helicase; go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent RNA helicase 1314178 MAK5 4851250 MAK5 Pichia stipitis CBS 6054 ATP-dependent RNA helicase XP_001387897.1 1311668 R 322104 CDS PICST_52942 126274237 4851251 join(1314381..1314605,1314621..1315406) 1 NC_009068.1 conserved hypothetical protein similar to YBZ1 in IRA1-MAK5 intergenic region of S. cerevisiae; YBZ1-like protein 1315406 YBZ1 4851251 YBZ1 Pichia stipitis CBS 6054 YBZ1-like protein XP_001387481.1 1314381 D 322104 CDS PICST_66414 126274238 4851252 complement(1315528..1317189) 1 NC_009068.1 hexose transporter similar to HXT3 similar to Candida intermedia GXF1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; hexose transporter 1317189 SUT1 4851252 SUT1 Pichia stipitis CBS 6054 hexose transporter XP_001387898.1 1315528 R 322104 CDS PICST_52484 126274239 4851253 complement(join(1318635..1318946,1319016..1320953)) 1 NC_009068.1 Ferric reductase, NADH/NADPH oxidase transmembrane component (8 domains); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; ferric reductase (FRE9 FRE5 FRE6 FRE4 FRE7) 1320953 FRE1.3 4851253 FRE1.3 Pichia stipitis CBS 6054 ferric reductase (FRE9 FRE5 FRE6 FRE4 FRE7) XP_001387899.1 1318635 R 322104 CDS PICST_34284 126274240 4851254 1321926..1322357 1 NC_009068.1 conserved hypothetical protein 1322357 4851254 PICST_34284 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387482.1 1321926 D 322104 CDS PICST_51088 126274241 4851255 complement(join(1322477..1322724,1322746..1324669)) 1 NC_009068.1 Ferric reductase, NADH/NADPH oxidase transmembrane component (6 domains) (FRE4) (FRE5) (FRE6) (FRE7) (FRE9); go_component: membrane; go_function: oxidoreductase activity; go_process: electron transport; Ferric reductase, NADH/NADPH oxidase transmembrane component (6 domains) 1324669 FRE1.1 4851255 FRE1.1 Pichia stipitis CBS 6054 Ferric reductase, NADH/NADPH oxidase transmembrane component (6 domains) XP_001387900.1 1322477 R 322104 CDS PICST_5847 126274242 4851256 complement(<1326934..>1327941) 1 NC_009068.1 Cdc2-related protein kinase Cell cycle control, cell division, chromosome partitioning; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Cdc2-related protein kinase (SGV1) >1327941 CRK1 4851256 CRK1 Pichia stipitis CBS 6054 Cdc2-related protein kinase (SGV1) XP_001387901.1 <1326934 R 322104 CDS PICST_80454 126274243 4851257 complement(join(1328468..1329961,1330112..1330186)) 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; myo-inositol transporter 1330186 ITR2 4851257 ITR2 Pichia stipitis CBS 6054 myo-inositol transporter XP_001387902.1 1328468 R 322104 CDS PICST_86147 126274244 4851258 complement(1331323..1332189) 1 NC_009068.1 go_component: mitochondrial electron transport chain; go_function: electron transporter activity; go_process: electron transport; cytochrome c1 1332189 CYT1 4851258 CYT1 Pichia stipitis CBS 6054 cytochrome c1 XP_001387903.1 1331323 R 322104 CDS PICST_38314 126274245 4851259 1334248..1335060 1 NC_009068.1 function unknown; go_component: membrane; go_function: molecular function unknown; putative transporter 1335060 FUN34 4851259 FUN34 Pichia stipitis CBS 6054 putative transporter XP_001387483.1 1334248 D 322104 CDS PICST_34288 126274246 4851260 complement(1335310..1335753) 1 NC_009068.1 similar to YK54; Uncharacterized conserved protein Function unknown 1335753 YK54 4851260 YK54 Pichia stipitis CBS 6054 Uncharacterized conserved protein Function unknown XP_001387904.1 1335310 R 322104 CDS PICST_66417 126274247 4851261 1337231..1339213 1 NC_009068.1 Calponin Homology Protein Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily); Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) 1339213 CHP1 4851261 CHP1 Pichia stipitis CBS 6054 Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) XP_001387484.1 1337231 D 322104 CDS PICST_86322 126274248 4851262 complement(1339540..1340526) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Casein kinase II, alpha subunit Cell cycle control, cell division, chromosome partitioning 1340526 CKA2 4851262 CKA2 Pichia stipitis CBS 6054 Casein kinase II, alpha subunit Cell cycle control, cell division, chromosome partitioning XP_001387905.1 1339540 R 322104 CDS PICST_52114 126274249 4851263 1342067..1342957 1 NC_009068.1 hypothetical protein 1342957 4851263 PICST_52114 Pichia stipitis CBS 6054 hypothetical protein XP_001387485.1 1342067 D 322104 CDS PICST_37563 126274250 4851264 complement(1343127..1343984) 1 NC_009068.1 similar to mitochondrial/chloroplast ribosomal protein L15/L10; involved in translation, ribosomal structure and biogenesis; go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein L15/L10-like protein 1343984 MRP10 4851264 MRP10 Pichia stipitis CBS 6054 ribosomal protein L15/L10-like protein XP_001387906.1 1343127 R 322104 CDS PICST_66419 126274251 4851265 1344695..1346623 1 NC_009068.1 Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat protein 1346623 NBE1 4851265 NBE1 Pichia stipitis CBS 6054 Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat protein XP_001387486.1 1344695 D 322104 CDS PICST_51571 126274252 4851266 <1348152..1349201 1 NC_009068.1 Sphingosine kinase (SPHK), involved in sphingolipid metabolism Lipid transport and metabolism; Sphingosine kinase, involved in sphingolipid metabolism Lipid transport and metabolism 1349201 SPH2 4851266 SPH2 Pichia stipitis CBS 6054 Sphingosine kinase, involved in sphingolipid metabolism Lipid transport and metabolism XP_001387487.1 <1348152 D 322104 CDS PICST_52466 126274253 4851267 complement(1352833..1354575) 1 NC_009068.1 putative permease, Suppressor of sulfoxyde ethionine Resistance Vitamin H transporter (H+/biotin symporter) (VHT1) (FEN2) (LIZ1); putative permease, Suppressor of sulfoxyde ethionine Resistance Vitamin H transporter (H+/biotin symporter) 1354575 FEN4 4851267 FEN4 Pichia stipitis CBS 6054 putative permease, Suppressor of sulfoxyde ethionine Resistance Vitamin H transporter (H+/biotin symporter) XP_001387907.1 1352833 R 322104 CDS PICST_34292 126274254 4851268 1357288..1358292 1 NC_009068.1 Aryl-alcohol dehydrogenase (Benzyl alcohol dehydrogenase) (BADH); go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; Alcohol dehydrogenase, class III, bacterial-like protein 1358292 AAD1 4851268 AAD1 Pichia stipitis CBS 6054 Alcohol dehydrogenase, class III, bacterial-like protein XP_001387488.1 1357288 D 322104 CDS PICST_28493 126274255 4851269 complement(1358586..1359110) 1 NC_009068.1 hypothetical protein 1359110 4851269 PICST_28493 Pichia stipitis CBS 6054 hypothetical protein XP_001387908.1 1358586 R 322104 CDS PICST_28494 126274256 4851270 complement(1359517..1361151) 1 NC_009068.1 Transcriptional activator of the JUN family 1361151 JUND 4851270 JUND Pichia stipitis CBS 6054 Transcriptional activator of the JUN family XP_001387909.1 1359517 R 322104 CDS PICST_28495 126274257 4851271 1361644..1364058 1 NC_009068.1 copper-transporting P-type ATPase with similarity to human Menkes and Wilsons genes (ATU2); with sequence similarity to human Menkes and Wilsons genes; go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; metal ion binding; catalytic activity; go_process: metal ion transport; metabolism; copper-transporting P-type ATPase 1364058 CCC2.1 4851271 CCC2.1 Pichia stipitis CBS 6054 copper-transporting P-type ATPase XP_001387489.1 1361644 D 322104 CDS PICST_28496 126274258 4851272 1364643..1366640 1 NC_009068.1 hypothetical protein 1366640 4851272 PICST_28496 Pichia stipitis CBS 6054 hypothetical protein XP_001387490.1 1364643 D 322104 CDS PICST_28497 126274259 4851273 join(1368831..1368936,1368990..1370593) 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; quinate permease 1370593 QUP3 4851273 QUP3 Pichia stipitis CBS 6054 quinate permease XP_001387491.1 1368831 D 322104 CDS PICST_80798 126274260 4851274 join(1380088..1380590,1380846..1384055,1384095..1384281) 1 NC_009068.1 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain-containing protein 1384281 RBP1 4851274 RBP1 Pichia stipitis CBS 6054 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain-containing protein XP_001387492.1 1380088 D 322104 CDS PICST_37946 126274261 4851275 <1386687..1386995 1 NC_009068.1 riboflavin aldehyde-forming enzyme 1386995 DAG7 4851275 DAG7 Pichia stipitis CBS 6054 riboflavin aldehyde-forming enzyme XP_001387493.1 <1386687 D 322104 CDS PICST_28502 126274262 4851276 complement(1387266..1388948) 1 NC_009068.1 amino acid permease carnitine permease; go_component: membrane; go_process: transport; amino acid permease 1388948 AGP2 4851276 AGP2 Pichia stipitis CBS 6054 amino acid permease XP_001387910.1 1387266 R 322104 CDS PICST_38391 126274263 4851277 complement(1391164..1392222) 1 NC_009068.1 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB aryl-alcohol dehydrogenases; aryl-alcohol dehydrogenase (AAD4) 1392222 IFD4 4851277 IFD4 Pichia stipitis CBS 6054 aryl-alcohol dehydrogenase (AAD4) XP_001387911.1 1391164 R 322104 CDS PICST_52035 126274264 4851278 join(<1393749..1393945,1393973..1394847,1394878..1395194) 1 NC_009068.1 with sequence similarity to human adrenodoxin reductase; mitochondrial protein 1395194 ARH1 4851278 ARH1 Pichia stipitis CBS 6054 mitochondrial protein XP_001387494.1 <1393749 D 322104 CDS PICST_28505 126274265 4851279 complement(1395244..1396296) 1 NC_009068.1 go_function: catalytic activity; triacylglycerol lipase activity; triacylglycerol lipase precursor 1396296 LIP10 4851279 LIP10 Pichia stipitis CBS 6054 triacylglycerol lipase precursor XP_001387912.1 1395244 R 322104 CDS PICST_28506 126274266 4851280 complement(1396585..1397259) 1 NC_009068.1 Predicted BBOX Zn-finger protein 1397259 VSP71 4851280 VSP71 Pichia stipitis CBS 6054 Predicted BBOX Zn-finger protein XP_001387913.1 1396585 R 322104 CDS PICST_80409 126274267 4851281 complement(1397755..1398024) 1 NC_009068.1 Mitochondrial Distribution and Morphology 1398024 MDM35 4851281 MDM35 Pichia stipitis CBS 6054 Mitochondrial Distribution and Morphology XP_001387914.1 1397755 R 322104 CDS PICST_28508 126274268 4851282 join(1398548..1399012,1399154,1399175..1399222,1399242..1400350) 1 NC_009068.1 DASH complex subunit ask1 (Outer kinetochore protein ASK1) (Associated with spindles and kinetochores protein 1) 1400350 ASK1 4851282 ASK1 Pichia stipitis CBS 6054 DASH complex subunit ask1 (Outer kinetochore protein ASK1) (Associated with spindles and kinetochores protein 1) XP_001387495.1 1398548 D 322104 CDS PICST_86552 126274269 4851283 1401224..1401451 1 NC_009068.1 hypothetical protein 1401451 4851283 PICST_86552 Pichia stipitis CBS 6054 hypothetical protein XP_001387496.1 1401224 D 322104 CDS PICST_34302 126274270 4851284 1401884..1402120 1 NC_009068.1 hypothetical protein 1402120 4851284 PICST_34302 Pichia stipitis CBS 6054 hypothetical protein XP_001387497.1 1401884 D 322104 CDS PICST_66424 126274271 4851285 complement(1402643..1406218) 1 NC_009068.1 Rho-type GTPase-activating protein 1406218 RGA1 4851285 RGA1 Pichia stipitis CBS 6054 Rho-type GTPase-activating protein XP_001387915.1 1402643 R 322104 CDS PICST_34303 126274272 4851286 complement(join(1408066..1408896,1408999..1409730)) 1 NC_009068.1 ceramide glucosyltransferase 1409730 CGT1 4851286 CGT1 Pichia stipitis CBS 6054 ceramide glucosyltransferase XP_001387916.1 1408066 R 322104 CDS PICST_34304 126274273 4851287 1412153..1413988 1 NC_009068.1 go_function: acyltransferase activity; ceramide glucosyltransferase 1413988 CAT2 4851287 CAT2 Pichia stipitis CBS 6054 ceramide glucosyltransferase XP_001387498.1 1412153 D 322104 CDS PICST_51550 126274274 4851288 join(<1417970..1418845,1418915..1420198) 1 NC_009068.1 similar to a family of mammalian RFX1-4 proteins which have a novel highly conserved DNA binding domain; DNA binding protein 1420198 RFX1 4851288 RFX1 Pichia stipitis CBS 6054 DNA binding protein XP_001387499.1 <1417970 D 322104 CDS PICST_28515 126274275 4851289 1420902..1422335 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; corticosteroid- binding protein 1422335 CPB2 4851289 CPB2 Pichia stipitis CBS 6054 corticosteroid- binding protein XP_001387500.1 1420902 D 322104 CDS PICST_34307 126274276 4851290 1422707..1423678 1 NC_009068.1 go_process: nucleoside metabolism; Ribose-phosphate pyrophosphokinase 1423678 KPR4 4851290 KPR4 Pichia stipitis CBS 6054 Ribose-phosphate pyrophosphokinase XP_001387501.1 1422707 D 322104 CDS PICST_86449 126274277 4851291 complement(1423847..1427335) 1 NC_009068.1 oligomeric, coiled-coil, peripheral membrane protein 1427335 CVT9 4851291 CVT9 Pichia stipitis CBS 6054 oligomeric, coiled-coil, peripheral membrane protein XP_001387917.1 1423847 R 322104 CDS PICST_37825 126274278 4851292 join(1428512..1429178,1429305..1429582) 1 NC_009068.1 conserved hypothetical protein 1429582 RXT2 4851292 RXT2 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387502.1 1428512 D 322104 CDS PICST_80864 126274279 4851293 complement(1429815..1430594) 1 NC_009068.1 Accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, & increases prior to DNA synthesis in meiosis required for DNA replication & repair, required for viability in cdc44, rad50, rad52 or rad57 backgrounds; go_component: nucleus; delta-DNA polymerase cofactor complex; go_function: DNA binding; DNA polymerase processivity factor activity; go_process: regulation of DNA replication; DNA polymerase delta processivity factor (proliferating cell nuclear antigen) 1430594 POL30 4851293 POL30 Pichia stipitis CBS 6054 DNA polymerase delta processivity factor (proliferating cell nuclear antigen) XP_001387918.1 1429815 R 322104 CDS PICST_52756 126274280 4851294 complement(1431656..1432225) 1 NC_009068.1 go_function: N-acetyltransferase activity; N-acetyltransferase 1432225 MAK3 4851294 MAK3 Pichia stipitis CBS 6054 N-acetyltransferase XP_001387919.1 1431656 R 322104 CDS PICST_85951 126274281 4851295 1433459..1434538 1 NC_009068.1 Fructose 1,6-bisphosphate aldolase; go_function: fructose-bisphosphate aldolase activity; zinc ion binding; go_process: glycolysis; fructose-bisphosphate aldolase 1434538 FBA1 4851295 FBA1 Pichia stipitis CBS 6054 fructose-bisphosphate aldolase XP_001387503.1 1433459 D 322104 CDS PICST_38808 126274282 4851296 complement(1435041..1435367) 1 NC_009068.1 go_component: mitochondrial inner membrane; go_function: protein translocase activity; go_process: protein-mitochondrial targeting; subunit of the TIM22-complex involved in mitochondrial biogenesis 1435367 MRS5 4851296 MRS5 Pichia stipitis CBS 6054 subunit of the TIM22-complex involved in mitochondrial biogenesis XP_001387920.1 1435041 R 322104 CDS PICST_74933 126274283 4851297 join(1435747..1436661,1436675..1436685,1436754..1436805,1436824..1437936) 1 NC_009068.1 go_function: tubulin-tyrosine ligase activity; go_process: protein modification; Predicted tubulin-tyrosine ligase 1437936 YBU4 4851297 YBU4 Pichia stipitis CBS 6054 Predicted tubulin-tyrosine ligase XP_001387504.1 1435747 D 322104 CDS PICST_28524 126274284 4851298 1438823..1439575 1 NC_009068.1 hypothetical protein, likely cell wall localized and GPI-anchored 1439575 4851298 PICST_28524 Pichia stipitis CBS 6054 hypothetical protein, likely cell wall localized and GPI-anchored XP_001387505.1 1438823 D 322104 CDS PICST_64887 126274285 4851299 join(1440604..1441004,1441089..1441554,1441621..1442275,1442354..1442703) 1 NC_009068.1 Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains; RNA polymerase II Degradation Factor 1 1442703 DEF1 4851299 DEF1 Pichia stipitis CBS 6054 RNA polymerase II Degradation Factor 1 XP_001387506.1 1440604 D 322104 CDS PICST_23779 126274287 4851300 <1445438..>1445692 1 NC_009068.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; Nonhistone chromosomal protein 6A >1445692 NHP6 4851300 NHP6 Pichia stipitis CBS 6054 Nonhistone chromosomal protein 6A XP_001387507.1 <1445438 D 322104 CDS PICST_37773 126274290 4851301 1447580..1448947 1 NC_009068.1 High level expression reduced Ty3 Transposition; Ty3 transposition effector 1448947 HRT2 4851301 HRT2 Pichia stipitis CBS 6054 Ty3 transposition effector XP_001387508.1 1447580 D 322104 CDS PICST_51739 126274293 4851302 complement(join(1449343..1449413,1449441..1449729)) 1 NC_009068.1 go_component: transcription factor TFIIA complex; go_function: RNA polymerase II transcription factor activity; go_process: transcription initiation from RNA polymerase II promoter; Transcription initiation factor IIA small chain (TFIIA 13.5 kDa subunit) 1449729 TOA2 4851302 TOA2 Pichia stipitis CBS 6054 Transcription initiation factor IIA small chain (TFIIA 13.5 kDa subunit) XP_001387921.1 1449343 R 322104 CDS PICST_38254 126274296 4851303 <1450353..1451396 1 NC_009068.1 Two A phosphatase Associated Protein, apparant MW of 42 kDA; go_process: response to biotic stimulus; regulation of signal transduction; Protein phosphatase 2A-associated protein 1451396 TAP42 4851303 TAP42 Pichia stipitis CBS 6054 Protein phosphatase 2A-associated protein XP_001387509.1 <1450353 D 322104 CDS PICST_80698 126274301 4851304 complement(join(1451544..1452258,1452337..1455056)) 1 NC_009068.1 nuclear pore protein 1455056 NUP120 4851304 NUP120 Pichia stipitis CBS 6054 nuclear pore protein XP_001387922.1 1451544 R 322104 CDS PICST_28531 126274305 4851305 1455704..1457128 1 NC_009068.1 Predicted E3 ubiquitin ligase Posttranslational modification, protein turnover, chaperones; go_function: nucleic acid binding; conserved zinc finger protein required for cell viability 1457128 MPE1 4851305 MPE1 Pichia stipitis CBS 6054 conserved zinc finger protein required for cell viability XP_001387510.1 1455704 D 322104 CDS PICST_74369 126274309 4851306 join(1459908..1461740,1461777..1462748) 1 NC_009068.1 ubiquitination pathway protein 1462748 BUL1 4851306 BUL1 Pichia stipitis CBS 6054 ubiquitination pathway protein XP_001387511.1 1459908 D 322104 CDS PICST_28533 126274313 4851307 1463721..1465007 1 NC_009068.1 go_function: catalytic activity; carbamoyl-phosphate synthase activity; ATP binding; go_process: nitrogen compound metabolism; Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) 1465007 CPA1 4851307 CPA1 Pichia stipitis CBS 6054 Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) XP_001387512.1 1463721 D 322104 CDS PICST_74706 126274317 4851308 1465849..1466733 1 NC_009068.1 go_function: catalytic activity; go_process: metabolism; membrane-bound non-heme di-iron oxygenase involved in lipid metabolism 1466733 ERG25 4851308 ERG25 Pichia stipitis CBS 6054 membrane-bound non-heme di-iron oxygenase involved in lipid metabolism XP_001387513.1 1465849 D 322104 CDS PICST_69059 126274320 4851309 1467916..1468434 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L18A 1468434 RPL20 4851309 RPL20 Pichia stipitis CBS 6054 60S ribosomal protein L18A XP_001387514.1 1467916 D 322104 CDS PICST_52102 126274325 4851310 1469192..1470007 1 NC_009068.1 NADP(+)-dependent dehydrogenase acts on serine, L-allo-threonine, and other 3-hydroxy acids; go_function: oxidoreductase activity; go_process: metabolism; serine dehydrogenase 1470007 YDF1 4851310 YDF1 Pichia stipitis CBS 6054 serine dehydrogenase XP_001387515.1 1469192 D 322104 CDS PICST_80053 126274328 4851311 1470540..1471349 1 NC_009068.1 go_function: oxidoreductase activity; go_process: metabolism; NADP(+)-dependent dehydrogenase acts on serine, L-allo-threonine, and other 3-hydroxy acids 1471349 YIM4 4851311 YIM4 Pichia stipitis CBS 6054 NADP(+)-dependent dehydrogenase acts on serine, L-allo-threonine, and other 3-hydroxy acids XP_001387516.1 1470540 D 322104 CDS PICST_39100 126274332 4851312 complement(1471563..1472693) 1 NC_009068.1 Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily; conserved protein of the N-type ATP pyrophosphatase superfamily 1472693 YGW1 4851312 YGW1 Pichia stipitis CBS 6054 conserved protein of the N-type ATP pyrophosphatase superfamily XP_001387923.1 1471563 R 322104 CDS PICST_66436 126274335 4851313 complement(1473396..1475915) 1 NC_009068.1 Translation initiation factor 3, subunit c (eIF-3c); go_component: eukaryotic translation initiation factor 3 complex; go_function: translation initiation factor activity; go_process: translational initiation; Protein required for nuclear import with some similarity to Nsr1p, another protein involved in nuclear transport 1475915 NIP1 4851313 NIP1 Pichia stipitis CBS 6054 Protein required for nuclear import with some similarity to Nsr1p, another protein involved in nuclear transport XP_001387924.1 1473396 R 322104 CDS PICST_38460 126274338 4851314 complement(1476461..1477783) 1 NC_009068.1 F-box protein 1477783 FBX9 4851314 FBX9 Pichia stipitis CBS 6054 F-box protein XP_001387925.1 1476461 R 322104 CDS PICST_5172 126274341 4851315 complement(<1478313..1479281) 1 NC_009068.1 conserved hypothetical protein 1479281 4851315 PICST_5172 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387926.1 <1478313 R 322104 CDS PICST_80771 126274344 4851316 1479741..1481117 1 NC_009068.1 go_function: glycylpeptide N-tetradecanoyltransferase activity; go_process: N-terminal protein myristoylation; myristoyl-CoA:protein N- myristoyltransferase 1481117 NMT1 4851316 NMT1 Pichia stipitis CBS 6054 myristoyl-CoA:protein N- myristoyltransferase XP_001387517.1 1479741 D 322104 CDS PICST_68798 126274348 4851317 1481443..1483143 1 NC_009068.1 beta-transducin superfamily with periodic tryptophan residues; periodic tryptophan protein 1 1483143 PWP1 4851317 PWP1 Pichia stipitis CBS 6054 periodic tryptophan protein 1 XP_001387518.1 1481443 D 322104 CDS PICST_34331 126274351 4851318 complement(1483324..1484004) 1 NC_009068.1 hypothetical protein 1484004 4851318 PICST_34331 Pichia stipitis CBS 6054 hypothetical protein XP_001387927.1 1483324 R 322104 CDS PICST_28545 126274354 4851319 complement(1484576..1488811) 1 NC_009068.1 hypothetical protein 1488811 4851319 PICST_28545 Pichia stipitis CBS 6054 hypothetical protein XP_001387928.1 1484576 R 322104 CDS PICST_80106 126274359 4851320 complement(join(1489819..1491297,1491331..1491672)) 1 NC_009068.1 go_process: intracellular signaling cascade; Bud Emergence Mediator 1491672 BEM1 4851320 BEM1 Pichia stipitis CBS 6054 Bud Emergence Mediator XP_001387929.1 1489819 R 322104 CDS PICST_39006 126274362 4851321 complement(join(1494004..1494287,1494345..1494435)) 1 NC_009068.1 CCAAT-binding factor, subunit A (HAP3) (HAP6) Histone-like transcriptional activator of respiratory functions; go_function: DNA binding; CCAAT-binding factor, subunit A (HAP3) 1494435 HAP3.1 4851321 HAP3.1 Pichia stipitis CBS 6054 CCAAT-binding factor, subunit A (HAP3) XP_001387930.1 1494004 R 322104 CDS PICST_37775 126274363 4851322 complement(1494974..1497787) 1 NC_009068.1 Fungal transcriptional regulatory protein (CYP1)-like; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; Fungal transcriptional regulatory protein 1497787 HAP1.1 4851322 HAP1.1 Pichia stipitis CBS 6054 Fungal transcriptional regulatory protein XP_001387931.1 1494974 R 322104 CDS PICST_80460 126274364 4851323 complement(1499940..1500851) 1 NC_009068.1 go_function: amino acid binding; go_process: metabolism; acetolactate synthase regulatory subunit 1500851 ILV6 4851323 ILV6 Pichia stipitis CBS 6054 acetolactate synthase regulatory subunit XP_001387932.1 1499940 R 322104 CDS PICST_66442 126274365 4851324 complement(1501780..1502196) 1 NC_009068.1 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain-containing protein 1502196 CRH2 4851324 CRH2 Pichia stipitis CBS 6054 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain-containing protein XP_001387933.1 1501780 R 322104 CDS PICST_86089 126274366 4851325 1505607..1507277 1 NC_009068.1 go_function: amidase activity; amidase activity 1507277 AMD5 4851325 AMD5 Pichia stipitis CBS 6054 amidase activity XP_001387519.1 1505607 D 322104 CDS PICST_86389 126274367 4851326 1507586..1510339 1 NC_009068.1 Sexual differentiation process protein ISP4; oligopeptide transporter protein 1510339 OPT6 4851326 OPT6 Pichia stipitis CBS 6054 oligopeptide transporter protein XP_001387520.1 1507586 D 322104 CDS PICST_28554 126274368 4851327 complement(1512623..1514290) 1 NC_009068.1 Glycoside hydrolase, family 17 (BGL2) (SCW2); go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; Cell wall endo-beta-1,3-glucanase 1514290 BOT2 4851327 BOT2 Pichia stipitis CBS 6054 Cell wall endo-beta-1,3-glucanase XP_001387934.1 1512623 R 322104 CDS PICST_28555 126274369 4851328 complement(1515172..1515549) 1 NC_009068.1 Similar to suppressor of mutant AC40 subunit of RNA polymerase I and III (high serine); Hypothetical suppressor of mutant AC40 subunit of RNA polymerase I and III (high serine) 1515549 SRP40.4 4851328 SRP40.4 Pichia stipitis CBS 6054 Hypothetical suppressor of mutant AC40 subunit of RNA polymerase I and III (high serine) XP_001387935.1 1515172 R 322104 CDS PICST_51695 126274370 4851329 complement(1516408..>1516893) 1 NC_009068.1 predicted protein >1516893 4851329 PICST_51695 Pichia stipitis CBS 6054 predicted protein XP_001387936.1 1516408 R 322104 CDS PICST_28557 126274371 4851330 1517525..1518163 1 NC_009068.1 go_function: N-acetyltransferase activity; Histone-specific N-acetyltransferase NAT4 1518163 NAT4 4851330 NAT4 Pichia stipitis CBS 6054 Histone-specific N-acetyltransferase NAT4 XP_001387521.1 1517525 D 322104 CDS PICST_68747 126274372 4851331 join(1519668..1520426,1520607..1521401) 1 NC_009068.1 Transcription factor RLM1 serum response factor-like protein that may function downstream of MPK1 (SLT2) MAP-kinase pathway; go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; transcription factor of the MADS box family 1521401 RLM1 4851331 RLM1 Pichia stipitis CBS 6054 transcription factor of the MADS box family XP_001387522.1 1519668 D 322104 CDS PICST_85801 126274373 4851332 join(1522157..1522162,1522673..1523377) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein S6A (S10A) (rp9) (YS4) 1523377 RS6 4851332 RS6 Pichia stipitis CBS 6054 ribosomal protein S6A (S10A) (rp9) (YS4) XP_001387523.1 1522157 D 322104 CDS PICST_34336 126274374 4851333 complement(1523632..1524861) 1 NC_009068.1 go_function: RNA binding; go_process: RNA processing; pre-mRNA splicing factor 1524861 PRP21 4851333 PRP21 Pichia stipitis CBS 6054 pre-mRNA splicing factor XP_001387937.1 1523632 R 322104 CDS PICST_37973 126274375 4851334 join(<1526096..1526363,1526430..1526731,1527485..>1528411) 1 NC_009068.1 predicted protein 1526731 4851334 PICST_37973 Pichia stipitis CBS 6054 predicted protein XP_001387524.1 <1526096 D 322104 CDS PICST_64901 126274376 4851335 join(1530665..1530847,1530947..1531122,1531246..1532092) 1 NC_009068.1 Nuclear Envelope Morphology 1532092 NEM1 4851335 NEM1 Pichia stipitis CBS 6054 Nuclear Envelope Morphology XP_001387525.1 1530665 D 322104 CDS PICST_51039 126274377 4851336 1533117..1534328 1 NC_009068.1 go_function: transaminase activity; go_process: biosynthesis; Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 1534328 AAT22 4851336 AAT22 Pichia stipitis CBS 6054 Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 XP_001387526.1 1533117 D 322104 CDS PICST_64902 126274378 4851337 complement(join(1534533..1536496,1536784..1536787,1536882..1536941)) 1 NC_009068.1 conserved; contains Zn finger domain; go_component: nucleus; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; go_function: nucleic acid binding; zinc ion binding; possible regulatory protein 1536941 4851337 PICST_64902 Pichia stipitis CBS 6054 possible regulatory protein XP_001387938.1 1534533 R 322104 CDS PICST_66451 126274379 4851338 complement(1539972..1540970) 1 NC_009068.1 go_function: oxidoreductase activity; mitochondrial malate dehydrogenase 1540970 MDH1 4851338 MDH1 Pichia stipitis CBS 6054 mitochondrial malate dehydrogenase XP_001387939.1 1539972 R 322104 CDS PICST_64904 126274380 4851339 join(1541966..1543534,1543595..1543759) 1 NC_009068.1 transcription factor TFIIIC 1543759 TFC1 4851339 TFC1 Pichia stipitis CBS 6054 transcription factor TFIIIC XP_001387527.1 1541966 D 322104 CDS PICST_51616 126274381 4851340 1544068..1544346 1 NC_009068.1 predicted protein 1544346 4851340 PICST_51616 Pichia stipitis CBS 6054 predicted protein XP_001387528.1 1544068 D 322104 CDS PICST_51082 126274382 4851341 complement(1544698..>1545336) 1 NC_009068.1 predicted protein >1545336 4851341 PICST_51082 Pichia stipitis CBS 6054 predicted protein XP_001387940.1 1544698 R 322104 CDS PICST_51416 126274383 4851342 complement(join(1545872..1546427,1546458..1548247)) 1 NC_009068.1 putative sulfate transporter 1548247 SUL3 4851342 SUL3 Pichia stipitis CBS 6054 putative sulfate transporter XP_001387941.1 1545872 R 322104 CDS PICST_38898 126274384 4851343 1549002..1549883 1 NC_009068.1 go_component: F-actin capping protein complex; go_function: actin binding; go_process: actin cytoskeleton organization and biogenesis; predicted protein 1549883 4851343 PICST_38898 Pichia stipitis CBS 6054 predicted protein XP_001387529.1 1549002 D 322104 CDS PICST_52838 126274385 4851344 join(1552847..1552972,1553006..1554172) 1 NC_009068.1 predicted protein 1554172 4851344 PICST_52838 Pichia stipitis CBS 6054 predicted protein XP_001387530.1 1552847 D 322104 CDS PICST_75094 126274386 4851345 complement(1554507..1555160) 1 NC_009068.1 go_component: clathrin vesicle coat; go_process: intracellular protein transport; predicted protein 1555160 4851345 PICST_75094 Pichia stipitis CBS 6054 predicted protein XP_001387942.1 1554507 R 322104 CDS PICST_28574 126274387 4851346 complement(1555666..1558104) 1 NC_009068.1 ELongator Protein 2 90kD subunit has WD40 repeats 1558104 ELP2 4851346 ELP2 Pichia stipitis CBS 6054 ELongator Protein 2 90kD subunit has WD40 repeats XP_001387943.1 1555666 R 322104 CDS PICST_34349 126274388 4851347 join(1558580..1558590,1558702..1559404) 1 NC_009068.1 RNA polymerase II holoenzyme/mediator subunit 1559404 SRB2 4851347 SRB2 Pichia stipitis CBS 6054 RNA polymerase II holoenzyme/mediator subunit XP_001387531.1 1558580 D 322104 CDS PICST_51414 126274389 4851348 1560007..1562304 1 NC_009068.1 go_function: nucleic acid binding; helicase activity; ATP binding; ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1) 1562304 HCA4 4851348 HCA4 Pichia stipitis CBS 6054 ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1) XP_001387532.1 1560007 D 322104 CDS PICST_85953 126274390 4851349 complement(1562487..1563725) 1 NC_009068.1 with sequence similarity to human BN51 protein; go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; tRNA metabolism; RNA polymerase III (C) subunit 1563725 RPC53 4851349 RPC53 Pichia stipitis CBS 6054 RNA polymerase III (C) subunit XP_001387944.1 1562487 R 322104 CDS PICST_38780 126274391 4851350 1564008..1565714 1 NC_009068.1 Disrupter of silencing SAS10 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) Something About Silencing 10 1565714 SAS10 4851350 SAS10 Pichia stipitis CBS 6054 Disrupter of silencing SAS10 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) Something About Silencing 10 XP_001387533.1 1564008 D 322104 CDS PICST_66456 126274392 4851351 complement(1565854..1567455) 1 NC_009068.1 T-complex protein 1, delta subunit (TCP-1-delta) (CCT-delta) 1567455 CCT4 4851351 CCT4 Pichia stipitis CBS 6054 T-complex protein 1, delta subunit (TCP-1-delta) (CCT-delta) XP_001387945.1 1565854 R 322104 CDS PICST_52683 126274393 4851352 1568426..1569514 1 NC_009068.1 highly conserved hypothetical protein 1569514 CDC123 4851352 CDC123 Pichia stipitis CBS 6054 highly conserved hypothetical protein XP_001387534.1 1568426 D 322104 CDS PICST_28583 126274394 4851353 1570828..1571826 1 NC_009068.1 Gluconolactonase putatively involved in growth regulation 1571826 CGR1 4851353 CGR1 Pichia stipitis CBS 6054 Gluconolactonase putatively involved in growth regulation XP_001387535.1 1570828 D 322104 CDS PICST_66458 126274395 4851354 complement(1573203..1573709) 1 NC_009068.1 protein required for growth at high temperature 1573709 HIT1 4851354 HIT1 Pichia stipitis CBS 6054 protein required for growth at high temperature XP_001387946.1 1573203 R 322104 CDS PICST_66459 126274396 4851355 complement(1575918..1577039) 1 NC_009068.1 hypothetical protein 1577039 4851355 PICST_66459 Pichia stipitis CBS 6054 hypothetical protein XP_001387947.1 1575918 R 322104 CDS PICST_86162 126274397 4851356 1581716..1582579 1 NC_009068.1 predicted protein 1582579 4851356 PICST_86162 Pichia stipitis CBS 6054 predicted protein XP_001387536.1 1581716 D 322104 CDS PICST_37914 126274398 4851357 <1583346..1584611 1 NC_009068.1 monocarboxylate permease 1584611 MCH4.3 4851357 MCH4.3 Pichia stipitis CBS 6054 monocarboxylate permease XP_001387537.1 <1583346 D 322104 CDS PICST_52200 126274399 4851358 complement(1584850..1586232) 1 NC_009068.1 predicted protein 1586232 4851358 PICST_52200 Pichia stipitis CBS 6054 predicted protein XP_001387948.1 1584850 R 322104 CDS PICST_51603 126274400 4851359 join(1587718..1588099,1588202..1589010,1589029..1589293,1589534..1590261) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; transcription factor involved in arginine metabolism 1590261 ARG83 4851359 ARG83 Pichia stipitis CBS 6054 transcription factor involved in arginine metabolism XP_001387538.1 1587718 D 322104 CDS PICST_66462 126274401 4851360 complement(1596993..1598903) 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; predicted protein 1598903 4851360 PICST_66462 Pichia stipitis CBS 6054 predicted protein XP_001387949.1 1596993 R 322104 CDS PICST_80227 126274402 4851361 complement(join(1601998..1602300,1602385..1602918,1602967..1603205,1603314..1603635)) 1 NC_009068.1 go_process: autophagy; predicted protein 1603635 4851361 PICST_80227 Pichia stipitis CBS 6054 predicted protein XP_001387950.1 1601998 R 322104 CDS PICST_38031 126274403 4851362 1604985..1606136 1 NC_009068.1 go_component: tRNA-intron endonuclease complex; go_function: tRNA-intron endonuclease activity; go_process: tRNA splicing; predicted protein 1606136 4851362 PICST_38031 Pichia stipitis CBS 6054 predicted protein XP_001387539.1 1604985 D 322104 CDS PICST_86136 126274404 4851363 1609069..1609545 1 NC_009068.1 go_function: DNA binding; predicted protein 1609545 4851363 PICST_86136 Pichia stipitis CBS 6054 predicted protein XP_001387540.1 1609069 D 322104 CDS PICST_86603 126274405 4851364 1611196..1613472 1 NC_009068.1 glycerokinase or possible possible ribitol kinase; go_process: carbohydrate metabolism; possible ribitol kinase or glycerol kinase 1613472 RKS1 4851364 RKS1 Pichia stipitis CBS 6054 possible ribitol kinase or glycerol kinase XP_001387541.1 1611196 D 322104 CDS PICST_80830 126274406 4851365 1615709..1618183 1 NC_009068.1 high affinity sulfate permease sulfate uptake is mediated by specific sulfate transporters SUL1 and SUL2, which control the concentration of endogenous activated sulfate intermediates.; high affinity sulfate permease 1618183 SUL2 4851365 SUL2 Pichia stipitis CBS 6054 high affinity sulfate permease XP_001387542.1 1615709 D 322104 CDS PICST_28598 126274407 4851366 1618728..1620431 1 NC_009068.1 chromatin assembly complex, subunit p90 1620431 RLF2 4851366 RLF2 Pichia stipitis CBS 6054 chromatin assembly complex, subunit p90 XP_001387543.1 1618728 D 322104 CDS PICST_28599 126274408 4851367 1620870..1623218 1 NC_009068.1 predicted protein 1623218 4851367 PICST_28599 Pichia stipitis CBS 6054 predicted protein XP_001387544.1 1620870 D 322104 CDS PICST_38487 126274409 4851368 complement(1623600..1623896) 1 NC_009068.1 predicted protein 1623896 4851368 PICST_38487 Pichia stipitis CBS 6054 predicted protein XP_001387951.1 1623600 R 322104 CDS PICST_28601 126274410 4851369 complement(1624403..1625842) 1 NC_009068.1 predicted protein 1625842 4851369 PICST_28601 Pichia stipitis CBS 6054 predicted protein XP_001387952.1 1624403 R 322104 CDS PICST_28602 126274411 4851370 complement(1626298..1627851) 1 NC_009068.1 predicted protein 1627851 4851370 PICST_28602 Pichia stipitis CBS 6054 predicted protein XP_001387953.1 1626298 R 322104 CDS PICST_28603 126274412 4851371 complement(join(1628315..1628671,1628784..1628856,1628992..1629059)) 1 NC_009068.1 predicted protein 1629059 4851371 PICST_28603 Pichia stipitis CBS 6054 predicted protein XP_001387954.1 1628315 R 322104 CDS PICST_86017 126274413 4851372 join(1629234..1629603,1629697..1630564,1630685..>1631408) 1 NC_009068.1 predicted protein 1630564 4851372 PICST_86017 Pichia stipitis CBS 6054 predicted protein XP_001387545.1 1629234 D 322104 CDS PICST_28605 126274414 4851373 1631826..1633697 1 NC_009068.1 predicted protein 1633697 4851373 PICST_28605 Pichia stipitis CBS 6054 predicted protein XP_001387546.1 1631826 D 322104 CDS PICST_51354 126274416 4851374 complement(1633881..1634615) 1 NC_009068.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 1634615 4851374 PICST_51354 Pichia stipitis CBS 6054 predicted protein XP_001387955.1 1633881 R 322104 CDS PICST_51364 126274419 4851375 join(<1637771..1638220,1638365..1638893,1638927..1639324,1639394..1640993,1641024..1641074,1641153..1641760) 1 NC_009068.1 zinc-finger transcription factor; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; protein similar to protein that controls the expression of ADH2, peroxisomal protein genes, and genes required for ethanol, glycerol, and fatty acid utilization 1641760 ADR1.1 4851375 ADR1.1 Pichia stipitis CBS 6054 protein similar to protein that controls the expression of ADH2, peroxisomal protein genes, and genes required for ethanol, glycerol, and fatty acid utilization XP_001387547.1 <1637771 D 322104 CDS PICST_86521 126274422 4851376 complement(1642009..1643658) 1 NC_009068.1 go_process: metabolism; predicted protein 1643658 4851376 PICST_86521 Pichia stipitis CBS 6054 predicted protein XP_001387956.1 1642009 R 322104 CDS PICST_74821 126274424 4851377 complement(1644031..1644447) 1 NC_009068.1 predicted protein 1644447 4851377 PICST_74821 Pichia stipitis CBS 6054 predicted protein XP_001387957.1 1644031 R 322104 CDS PICST_52615 126274426 4851378 1644743..1645555 1 NC_009068.1 predicted protein 1645555 4851378 PICST_52615 Pichia stipitis CBS 6054 predicted protein XP_001387548.1 1644743 D 322104 CDS PICST_85839 126274428 4851379 complement(join(1647243..1647418,1647662..1648282,1648331..1649350,1649444..1649966)) 1 NC_009068.1 Fungal-specific transcription factor; zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type 1649966 FST12 4851379 FST12 Pichia stipitis CBS 6054 zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type XP_001387958.1 1647243 R 322104 CDS PICST_52208 126274432 4851380 complement(1651077..1652012) 1 NC_009068.1 go_function: catalytic activity; ferric iron binding; iron ion binding; catechol 1,2-dioxygenase activity; go_process: aromatic compound metabolism; catechol metabolism; hydroxyquinol 1,2- dioxygenase 1652012 HDQ2 4851380 HDQ2 Pichia stipitis CBS 6054 hydroxyquinol 1,2- dioxygenase XP_001387959.1 1651077 R 322104 CDS PICST_28613 126274435 4851381 join(1653981..1653987,1654111..1654751) 1 NC_009068.1 Glutathione S-transferase II (GST-II); Glutathione S-transferase 1654751 GST2 4851381 GST2 Pichia stipitis CBS 6054 Glutathione S-transferase XP_001387549.1 1653981 D 322104 CDS PICST_52044 126274439 4851382 complement(<1654909..1656555) 1 NC_009068.1 multidrug-resistance transporter 1656555 MDR5 4851382 MDR5 Pichia stipitis CBS 6054 multidrug-resistance transporter XP_001387960.1 <1654909 R 322104 CDS PICST_28615 126274443 4851383 complement(1657185..1658195) 1 NC_009068.1 predicted protein 1658195 4851383 PICST_28615 Pichia stipitis CBS 6054 predicted protein XP_001387961.1 1657185 R 322104 CDS PICST_28618 126274446 4851384 complement(join(1673087..1673410,1673473..1673589)) 1 NC_009068.1 predicted protein 1673589 4851384 PICST_28618 Pichia stipitis CBS 6054 predicted protein XP_001387962.1 1673087 R 322104 CDS PICST_28619 126274449 4851385 1674313..1676883 1 NC_009068.1 Vacuolar sorting protein VPS1, dynamin, and related proteins mitochondrial precursor [Contains: MGM1 protein, isoform 1 MGM1 protein, isoform 2]; go_function: GTP binding; mitochondrial dynamin-like GTPase 1676883 MGM1 4851385 MGM1 Pichia stipitis CBS 6054 mitochondrial dynamin-like GTPase XP_001387550.1 1674313 D 322104 CDS PICST_51531 126274452 4851386 complement(join(1677070..1678632,1678660..1679634)) 1 NC_009068.1 Nucleolar protin NAN1 (U3 small nucleolar RNA-associated protein 17) (U3 snoRNA-associated protein 17) 1679634 NAN1 4851386 NAN1 Pichia stipitis CBS 6054 Nucleolar protin NAN1 (U3 small nucleolar RNA-associated protein 17) (U3 snoRNA-associated protein 17) XP_001387963.1 1677070 R 322104 CDS PICST_37912 126274455 4851387 1679854..1680072 1 NC_009068.1 go_function: DNA-directed RNA polymerase activity; go_process: transcription; DNA-directed RNA Polymerase II subunit L 1680072 RPB10 4851387 RPB10 Pichia stipitis CBS 6054 DNA-directed RNA Polymerase II subunit L XP_001387551.1 1679854 D 322104 CDS PICST_34371 126274458 4851388 complement(1680573..1682321) 1 NC_009068.1 Carboxypeptidase S precursor (YSCS) (GLY-X carboxypeptidase); go_function: metallopeptidase activity; go_process: proteolysis and peptidolysis; Gly-X carboxypeptidase 1682321 CPS1 4851388 CPS1 Pichia stipitis CBS 6054 Gly-X carboxypeptidase XP_001387964.1 1680573 R 322104 CDS PICST_66476 126274461 4851389 1684780..1685910 1 NC_009068.1 hypothetical serine-rich glycoprotein 1685910 4851389 PICST_66476 Pichia stipitis CBS 6054 hypothetical serine-rich glycoprotein XP_001387552.1 1684780 D 322104 CDS PICST_37441 126274465 4851390 1690439..1691188 1 NC_009068.1 go_component: nucleus; go_function: transcription initiation factor activity; go_process: transcription initiation from RNA polymerase II promoter; transcription initiation factor TFIIA large subunit (TOA1) 1691188 TOA1 4851390 TOA1 Pichia stipitis CBS 6054 transcription initiation factor TFIIA large subunit (TOA1) XP_001387553.1 1690439 D 322104 CDS PICST_66477 126274467 4851391 complement(1691469..1692197) 1 NC_009068.1 predicted protein 1692197 4851391 PICST_66477 Pichia stipitis CBS 6054 predicted protein XP_001387965.1 1691469 R 322104 CDS PICST_66478 126274472 4851392 complement(1692895..1697583) 1 NC_009068.1 go_process: intracellular signaling cascade; predicted protein 1697583 4851392 PICST_66478 Pichia stipitis CBS 6054 predicted protein XP_001387966.1 1692895 R 322104 CDS PICST_34373 126274475 4851393 complement(join(1699509..1701243,1701316..1701408,1701466..1701764)) 1 NC_009068.1 Histone deacetylase HOS3; histone deacetylase 1701764 HOS3 4851393 HOS3 Pichia stipitis CBS 6054 histone deacetylase XP_001387967.1 1699509 R 322104 CDS PICST_86231 126274478 4851394 complement(1702668..1703864) 1 NC_009068.1 Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate synthase) 1703864 LIP12 4851394 LIP12 Pichia stipitis CBS 6054 Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate synthase) XP_001387968.1 1702668 R 322104 CDS PICST_68990 126274482 4851395 complement(1704424..1705284) 1 NC_009068.1 isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomerase) 1705284 IDI1 4851395 IDI1 Pichia stipitis CBS 6054 isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IPP isomerase) XP_001387969.1 1704424 R 322104 CDS PICST_52415 126274484 4851396 1706603..1707988 1 NC_009068.1 multicopy suppressor of BFA (Brefeldin A)-induced lethality ER-Golgi vesicle-tethering protein p115 implicated in secretion and nuclear segregation 1707988 BFR1 4851396 BFR1 Pichia stipitis CBS 6054 multicopy suppressor of BFA (Brefeldin A)-induced lethality ER-Golgi vesicle-tethering protein p115 implicated in secretion and nuclear segregation XP_001387554.1 1706603 D 322104 CDS PICST_5340 126274487 4851397 <1708486..>1709589 1 NC_009068.1 hypothetical protein >1709589 4851397 PICST_5340 Pichia stipitis CBS 6054 hypothetical protein XP_001387555.1 <1708486 D 322104 CDS PICST_74722 126274490 4851398 join(1710575..1710637,1711133..1711996) 1 NC_009068.1 beta-1,3 glucan transferase cell wall glucanase [KO:K01210]; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; go_process: carbohydrate metabolism; Glycoside hydrolase, family 17 1711996 SCW4 4851398 SCW4 Pichia stipitis CBS 6054 Glycoside hydrolase, family 17 XP_001387556.1 1710575 D 322104 CDS PICST_28635 126274494 4851399 1712817..1713560 1 NC_009068.1 Reversal of tor2 lethality 1713560 ROT1 4851399 ROT1 Pichia stipitis CBS 6054 Reversal of tor2 lethality XP_001387557.1 1712817 D 322104 CDS PICST_25832 126274497 4851400 complement(join(<1719857..1720279,1720304..>1721119)) 1 NC_009068.1 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain Probable xyloglucan endotransglucosylase/hydrolase; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; cell wall protein in family of putative glycosidases Probable xyloglucan endotransglucosylase/hydrolase 1720279 CRH1 4851400 CRH1 Pichia stipitis CBS 6054 cell wall protein in family of putative glycosidases Probable xyloglucan endotransglucosylase/hydrolase XP_001387970.1 <1719857 R 322104 CDS PICST_66483 126274500 4851401 1723361..1724887 1 NC_009068.1 predicted protein 1724887 4851401 PICST_66483 Pichia stipitis CBS 6054 predicted protein XP_001387558.1 1723361 D 322104 CDS PICST_38374 126274504 4851402 join(1726541..1726869,1727005..1727239) 1 NC_009068.1 predicted protein 1727239 4851402 PICST_38374 Pichia stipitis CBS 6054 predicted protein XP_001387559.1 1726541 D 322104 CDS PICST_52502 126274508 4851403 <1727787..1728800 1 NC_009068.1 predicted protein 1728800 4851403 PICST_52502 Pichia stipitis CBS 6054 predicted protein XP_001387560.1 <1727787 D 322104 CDS PICST_80641 126274512 4851404 complement(join(1728888..1729559,1729683..1730249,1730280..1730861)) 1 NC_009068.1 go_component: intracellular; go_function: actin binding; predicted protein 1730861 4851404 PICST_80641 Pichia stipitis CBS 6054 predicted protein XP_001387971.1 1728888 R 322104 CDS PICST_52049 126274515 4851405 complement(1731836..1732153) 1 NC_009068.1 predicted protein 1732153 4851405 PICST_52049 Pichia stipitis CBS 6054 predicted protein XP_001387972.1 1731836 R 322104 CDS PICST_28643 126274518 4851406 1732950..1738745 1 NC_009068.1 go_function: ubiquitin-protein ligase activity; go_process: ubiquitin cycle; predicted protein 1738745 4851406 PICST_28643 Pichia stipitis CBS 6054 predicted protein XP_001387561.1 1732950 D 322104 CDS PICST_64920 126274522 4851407 complement(1738908..1744316) 1 NC_009068.1 go_function: ubiquitin-protein ligase activity; go_process: ubiquitin cycle; predicted protein 1744316 4851407 PICST_64920 Pichia stipitis CBS 6054 predicted protein XP_001387973.1 1738908 R 322104 CDS PICST_74631 126274525 4851408 1745024..1746238 1 NC_009068.1 Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS); go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; tyrosyl-tRNA synthetase 1746238 TYS1 4851408 TYS1 Pichia stipitis CBS 6054 tyrosyl-tRNA synthetase XP_001387562.1 1745024 D 322104 CDS PICST_28646 126274528 4851409 1748165..1748929 1 NC_009068.1 go_function: molecular function unknown; predicted protein 1748929 4851409 PICST_28646 Pichia stipitis CBS 6054 predicted protein XP_001387563.1 1748165 D 322104 CDS PICST_74602 126274531 4851410 1749239..1750531 1 NC_009068.1 predicted protein 1750531 4851410 PICST_74602 Pichia stipitis CBS 6054 predicted protein XP_001387564.1 1749239 D 322104 CDS PICST_52196 126274534 4851411 complement(<1750844..1751455) 1 NC_009068.1 predicted protein 1751455 4851411 PICST_52196 Pichia stipitis CBS 6054 predicted protein XP_001387974.1 <1750844 R 322104 CDS PICST_66490 126274538 4851412 1754234..1755982 1 NC_009068.1 Phosphate permease PHO89 (Na(+)/Pi cotransporter PHO89); go_component: membrane; go_function: inorganic phosphate transporter activity; go_process: phosphate transport; Na+/Pi symporter 1755982 PHO89 4851412 PHO89 Pichia stipitis CBS 6054 Na+/Pi symporter XP_001387565.1 1754234 D 322104 CDS PICST_69050 126274541 4851413 1758394..1758951 1 NC_009068.1 go_function: GTP binding; predicted protein 1758951 4851413 PICST_69050 Pichia stipitis CBS 6054 predicted protein XP_001387566.1 1758394 D 322104 CDS PICST_52223 126274542 4851414 complement(1759252..1760601) 1 NC_009068.1 prephenate dehydrogenase 1760601 TYR1 4851414 TYR1 Pichia stipitis CBS 6054 prephenate dehydrogenase XP_001387975.1 1759252 R 322104 CDS PICST_52257 126274543 4851415 join(1760839..1761873,1761913..1762236) 1 NC_009068.1 Phosphomevalonate kinase 1762236 ERG8 4851415 ERG8 Pichia stipitis CBS 6054 Phosphomevalonate kinase XP_001387567.1 1760839 D 322104 CDS PICST_52510 126274544 4851416 <1763148..>1764149 1 NC_009068.1 predicted protein >1764149 4851416 PICST_52510 Pichia stipitis CBS 6054 predicted protein XP_001387568.1 <1763148 D 322104 CDS PICST_64926 126274545 4851417 1765968..1767758 1 NC_009068.1 Pyruvate decarboxylase highly expressed on XO (45) less on XOL (6); pyruvate decarboxylase 1767758 PDC1 4851417 PDC1 Pichia stipitis CBS 6054 pyruvate decarboxylase XP_001387569.1 1765968 D 322104 CDS PICST_69023 126274546 4851418 1768206..1768919 1 NC_009068.1 go_function: hydrolase activity; predicted protein 1768919 4851418 PICST_69023 Pichia stipitis CBS 6054 predicted protein XP_001387570.1 1768206 D 322104 CDS PICST_28659 126274547 4851419 1769322..1771124 1 NC_009068.1 go_function: metallopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 1771124 4851419 PICST_28659 Pichia stipitis CBS 6054 predicted protein XP_001387571.1 1769322 D 322104 CDS PICST_86171 126274548 4851420 1771522..1772607 1 NC_009068.1 predicted protein 1772607 4851420 PICST_86171 Pichia stipitis CBS 6054 predicted protein XP_001387572.1 1771522 D 322104 CDS PICST_80274 126274549 4851421 complement(join(1772821..1774560,1774603..1774638)) 1 NC_009068.1 predicted protein 1774638 4851421 PICST_80274 Pichia stipitis CBS 6054 predicted protein XP_001387976.1 1772821 R 322104 CDS PICST_34398 126274550 4851422 1775207..1776130 1 NC_009068.1 Mitochondrial carnitine/acylcarnitine carrier protein (Carnitine/acylcarnitine translocase) (Yong-Su Jin[2006-01-06 11:56:32]); go_component: membrane; go_function: binding; go_process: transport; mitochondrial carrier protein 1776130 YCM1 4851422 YCM1 Pichia stipitis CBS 6054 mitochondrial carrier protein XP_001387573.1 1775207 D 322104 CDS PICST_38186 126274551 4851423 complement(1776324..1776932) 1 NC_009068.1 predicted protein 1776932 4851423 PICST_38186 Pichia stipitis CBS 6054 predicted protein XP_001387977.1 1776324 R 322104 CDS PICST_34399 126274552 4851424 1777613..1778803 1 NC_009068.1 mannosyltransferase 1778803 MNT45 4851424 MNT45 Pichia stipitis CBS 6054 mannosyltransferase XP_001387574.1 1777613 D 322104 CDS PICST_38006 126274553 4851425 1779134..1779859 1 NC_009068.1 go_function: 3'-5'-exoribonuclease activity; RNA binding; go_process: RNA processing; predicted protein 1779859 4851425 PICST_38006 Pichia stipitis CBS 6054 predicted protein XP_001387575.1 1779134 D 322104 CDS PICST_68974 126274554 4851426 1788618..1789538 1 NC_009068.1 predicted protein 1789538 4851426 PICST_68974 Pichia stipitis CBS 6054 predicted protein XP_001387576.1 1788618 D 322104 CDS PICST_37815 126274555 4851427 join(1790112..1790184,1790215..1790915) 1 NC_009068.1 cytochrome c1 heme lyase links heme covalently to apocytochrome c1; go_component: mitochondrion; go_function: holocytochrome-c synthase activity; cytochrome c1 heme lyase 1790915 CYT2 4851427 CYT2 Pichia stipitis CBS 6054 cytochrome c1 heme lyase XP_001387577.1 1790112 D 322104 CDS PICST_38238 126274556 4851428 complement(1791373..1791648) 1 NC_009068.1 go_component: mitochondrial inner membrane; go_function: protein translocase activity; go_process: protein-mitochondrial targeting; predicted protein 1791648 4851428 PICST_38238 Pichia stipitis CBS 6054 predicted protein XP_001387978.1 1791373 R 322104 CDS PICST_52708 126274557 4851429 complement(1797482..1799425) 1 NC_009068.1 predicted protein 1799425 4851429 PICST_52708 Pichia stipitis CBS 6054 predicted protein XP_001387979.1 1797482 R 322104 CDS PICST_52580 126274558 4851430 complement(join(1799893..1800275,1800306..1801578)) 1 NC_009068.1 predicted protein 1801578 4851430 PICST_52580 Pichia stipitis CBS 6054 predicted protein XP_001387980.1 1799893 R 322104 CDS PICST_37361 126274559 4851431 1802132..1802422 1 NC_009068.1 go_component: mitochondrial inner membrane; go_function: protein translocase activity; go_process: protein-mitochondrial targeting; predicted protein 1802422 4851431 PICST_37361 Pichia stipitis CBS 6054 predicted protein XP_001387578.1 1802132 D 322104 CDS PICST_38885 126274560 4851432 1803498..1804226 1 NC_009068.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 1804226 4851432 PICST_38885 Pichia stipitis CBS 6054 predicted protein XP_001387579.1 1803498 D 322104 CDS PICST_37681 126274561 4851433 complement(1804602..1805240) 1 NC_009068.1 go_component: integral to membrane; go_function: receptor activity; go_process: protein transport; predicted protein 1805240 4851433 PICST_37681 Pichia stipitis CBS 6054 predicted protein XP_001387981.1 1804602 R 322104 CDS PICST_80114 126274562 4851434 complement(join(1805837..1805867,1805974..1806836)) 1 NC_009068.1 predicted protein 1806836 4851434 PICST_80114 Pichia stipitis CBS 6054 predicted protein XP_001387982.1 1805837 R 322104 CDS PICST_28677 126274563 4851435 1807332..1808774 1 NC_009068.1 hyphal wall protein similar to FLO1; hyphal wall protein (putative) 1808774 HWP1 4851435 HWP1 Pichia stipitis CBS 6054 hyphal wall protein (putative) XP_001387580.1 1807332 D 322104 CDS PICST_52034 126274564 4851436 join(1810109..1813793,1813824..1814164) 1 NC_009068.1 pre-mRNA 3'-end processing factor CF II Functions in cleavage of 3'-ends of pre-mRNAs, prior to polyadenylation 23.5% identical to the 160-kDa subunit of mammalian cleavage and polyadenylation specificity factor (CPSF-160); go_component: nucleus; go_function: nucleic acid binding; pre-mRNA 3'-end processing factor CF II mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) RNA processing and modification 1814164 CFT1 4851436 CFT1 Pichia stipitis CBS 6054 pre-mRNA 3'-end processing factor CF II mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) RNA processing and modification XP_001387581.1 1810109 D 322104 CDS PICST_34408 126274565 4851437 join(1814490..1814568,1814620..1815233) 1 NC_009068.1 Ethanolamine-P-transferase GPI11/PIG-F, involved in glycosylphosphatidylinositol anchor biosynthesis Cell wall/membrane/envelope biogenesis; phosphatidylinositol glycan 1815233 GPI11 4851437 GPI11 Pichia stipitis CBS 6054 phosphatidylinositol glycan XP_001387582.1 1814490 D 322104 CDS PICST_66500 126274566 4851438 1816246..1816779 1 NC_009068.1 predicted protein 1816779 4851438 PICST_66500 Pichia stipitis CBS 6054 predicted protein XP_001387583.1 1816246 D 322104 CDS PICST_66501 126274567 4851439 1817407..1819638 1 NC_009068.1 predicted protein 1819638 4851439 PICST_66501 Pichia stipitis CBS 6054 predicted protein XP_001387584.1 1817407 D 322104 CDS PICST_66502 126274568 4851440 complement(join(1821270..1821321,1821380..1821981)) 1 NC_009068.1 hypothetical protein 1821981 4851440 PICST_66502 Pichia stipitis CBS 6054 hypothetical protein XP_001387983.1 1821270 R 322104 CDS PICST_80614 126274569 4851441 1824809..1828339 1 NC_009068.1 predicted protein 1828339 4851441 PICST_80614 Pichia stipitis CBS 6054 predicted protein XP_001387585.1 1824809 D 322104 CDS PICST_38281 126274570 4851442 1828846..1830231 1 NC_009068.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase); go_function: transaminase activity; aminotransferase 1830231 YOD2 4851442 YOD2 Pichia stipitis CBS 6054 aminotransferase XP_001387586.1 1828846 D 322104 CDS PICST_28685 126274571 4851443 1830658..1831407 1 NC_009068.1 predicted protein 1831407 4851443 PICST_28685 Pichia stipitis CBS 6054 predicted protein XP_001387587.1 1830658 D 322104 CDS PICST_74652 126274572 4851444 1831674..1832684 1 NC_009068.1 RNA polymerase III (C) subunit 1832684 RPC40 4851444 RPC40 Pichia stipitis CBS 6054 RNA polymerase III (C) subunit XP_001387588.1 1831674 D 322104 CDS PICST_28687 126274573 4851445 1833945..1835420 1 NC_009068.1 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain-containing protein 1835420 RBP3 4851445 RBP3 Pichia stipitis CBS 6054 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain-containing protein XP_001387589.1 1833945 D 322104 CDS PICST_38480 126274574 4851446 complement(1835546..>1836865) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein >1836865 4851446 PICST_38480 Pichia stipitis CBS 6054 predicted protein XP_001387984.1 1835546 R 322104 CDS PICST_66507 126274575 4851447 complement(join(1838252..1838442,1838503..1838800)) 1 NC_009068.1 predicted protein 1838800 4851447 PICST_66507 Pichia stipitis CBS 6054 predicted protein XP_001387985.1 1838252 R 322104 CDS PICST_28690 126274576 4851448 complement(1840178..1841083) 1 NC_009068.1 hypothetical protein 1841083 4851448 PICST_28690 Pichia stipitis CBS 6054 hypothetical protein XP_001387986.1 1840178 R 322104 CDS PICST_28691 126274577 4851449 complement(1842094..1842867) 1 NC_009068.1 hypothetical protein 1842867 4851449 PICST_28691 Pichia stipitis CBS 6054 hypothetical protein XP_001387987.1 1842094 R 322104 CDS PICST_52438 126274578 4851450 <1843802..1844209 1 NC_009068.1 predicted protein 1844209 4851450 PICST_52438 Pichia stipitis CBS 6054 predicted protein XP_001387590.1 <1843802 D 322104 CDS PICST_28693 126274579 4851451 1844501..1844890 1 NC_009068.1 predicted protein 1844890 4851451 PICST_28693 Pichia stipitis CBS 6054 predicted protein XP_001387591.1 1844501 D 322104 CDS PICST_69039 126274580 4851452 1845508..1846155 1 NC_009068.1 go_component: membrane; go_function: protein carrier activity; go_process: intracellular protein transport; predicted protein 1846155 4851452 PICST_69039 Pichia stipitis CBS 6054 predicted protein XP_001387592.1 1845508 D 322104 CDS PICST_23033 126274581 4851453 <1846807..>1847103 1 NC_009068.1 predicted protein >1847103 4851453 PICST_23033 Pichia stipitis CBS 6054 predicted protein XP_001387593.1 <1846807 D 322104 CDS PICST_80310 126274582 4851454 complement(1847341..1850157) 1 NC_009068.1 predicted protein 1850157 4851454 PICST_80310 Pichia stipitis CBS 6054 predicted protein XP_001387988.1 1847341 R 322104 CDS PICST_66512 126274583 4851455 complement(1851326..1854802) 1 NC_009068.1 predicted protein 1854802 4851455 PICST_66512 Pichia stipitis CBS 6054 predicted protein XP_001387989.1 1851326 R 322104 CDS PICST_28697 126274584 4851456 join(1856116..1856240,1856275..1856300,1856341..1856461,1856483..1856616,1856801..1856916) 1 NC_009068.1 predicted protein 1856916 4851456 PICST_28697 Pichia stipitis CBS 6054 predicted protein XP_001387594.1 1856116 D 322104 CDS PICST_34417 126274585 4851457 1857323..1858309 1 NC_009068.1 putative cinnamyl-alcohol dehydrogenase; hypothetical protein 1858309 CAD3 4851457 CAD3 Pichia stipitis CBS 6054 hypothetical protein XP_001387595.1 1857323 D 322104 CDS PICST_80185 126274586 4851458 1860109..1861104 1 NC_009068.1 induced by osmotic stress; cinnamyl-alcohol dehydrogenase family / CAD family; CAD family protein 1861104 CAD2 4851458 CAD2 Pichia stipitis CBS 6054 CAD family protein XP_001387596.1 1860109 D 322104 CDS PICST_80440 126274587 4851459 complement(1861280..1862599) 1 NC_009068.1 go_function: transaminase activity; go_process: biosynthesis; aspartate aminotransferase 1862599 AAT1 4851459 AAT1 Pichia stipitis CBS 6054 aspartate aminotransferase XP_001387990.1 1861280 R 322104 CDS PICST_28701 126274588 4851460 complement(1865914..1867269) 1 NC_009068.1 go_function: catalytic activity; homocitrate synthase 1867269 LYS21 4851460 LYS21 Pichia stipitis CBS 6054 homocitrate synthase XP_001387991.1 1865914 R 322104 CDS PICST_28702 126274589 4851461 1868049..1869572 1 NC_009068.1 aromatic amino acid aminotransferase II appears to be a second copy picked up and amplified along with adjacent AAD6 - aryl alcohol dehydrogenase; aromatic amino acid aminotransferase II 1869572 ARO9.2 4851461 ARO9.2 Pichia stipitis CBS 6054 aromatic amino acid aminotransferase II XP_001387597.1 1868049 D 322104 CDS PICST_37697 126274590 4851462 join(1870227..1870815,1874537..1875045) 1 NC_009068.1 aryl-alcohol dehydrogenases 1875045 AAD6 4851462 AAD6 Pichia stipitis CBS 6054 aryl-alcohol dehydrogenases XP_001387598.1 1870227 D 322104 CDS PICST_28706 126274591 4851463 complement(1875261..1878158) 1 NC_009068.1 go_component: integral to membrane; predicted protein 1878158 4851463 PICST_28706 Pichia stipitis CBS 6054 predicted protein XP_001387992.1 1875261 R 322104 CDS PICST_28707 126274592 4851464 complement(1878772..1879200) 1 NC_009068.1 predicted protein 1879200 4851464 PICST_28707 Pichia stipitis CBS 6054 predicted protein XP_001387993.1 1878772 R 322104 CDS PICST_52018 126274593 4851465 complement(1879788..1881770) 1 NC_009068.1 predicted protein 1881770 4851465 PICST_52018 Pichia stipitis CBS 6054 predicted protein XP_001387994.1 1879788 R 322104 CDS PICST_52414 126274594 4851466 join(1882268..1882738,1882772..1885834) 1 NC_009068.1 go_component: membrane; go_function: ATP binding; hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATPase that leads to neomycin-resistant protein when overexpressed 1885834 NEO1 4851466 NEO1 Pichia stipitis CBS 6054 ATPase that leads to neomycin-resistant protein when overexpressed XP_001387599.1 1882268 D 322104 CDS PICST_86570 126274595 4851467 join(1891549..1891620,1892035..1893600) 1 NC_009068.1 go_component: proton-transporting two-sector ATPase complex; go_function: ATP binding; hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP biosynthesis; F1F0-ATPase complex, F1 alpha subunit 1893600 ATP1 4851467 ATP1 Pichia stipitis CBS 6054 F1F0-ATPase complex, F1 alpha subunit XP_001387600.1 1891549 D 322104 CDS PICST_28712 126274596 4851468 1894516..1895955 1 NC_009068.1 predicted protein 1895955 4851468 PICST_28712 Pichia stipitis CBS 6054 predicted protein XP_001387601.1 1894516 D 322104 CDS PICST_51281 126274597 4851469 complement(join(1896022..1898828,1898856..1899054)) 1 NC_009068.1 go_function: chitin synthase activity; go_process: chitin biosynthesis; chitin synthase 2.2 1899054 CHS2.2 4851469 CHS2.2 Pichia stipitis CBS 6054 chitin synthase 2.2 XP_001387995.1 1896022 R 322104 CDS PICST_51802 126274598 4851470 1908279..1909301 1 NC_009068.1 predicted protein 1909301 4851470 PICST_51802 Pichia stipitis CBS 6054 predicted protein XP_001387602.1 1908279 D 322104 CDS PICST_51697 126274599 4851471 1909920..1910321 1 NC_009068.1 predicted protein 1910321 4851471 PICST_51697 Pichia stipitis CBS 6054 predicted protein XP_001387603.1 1909920 D 322104 CDS PICST_39084 126274600 4851472 complement(1910587..1911537) 1 NC_009068.1 go_component: integral to membrane; 3-oxo-5a-steroid 4- dehydrogenase 1911537 TSC13 4851472 TSC13 Pichia stipitis CBS 6054 3-oxo-5a-steroid 4- dehydrogenase XP_001387996.1 1910587 R 322104 CDS PICST_69049 126274601 4851473 1912343..1912795 1 NC_009068.1 go_function: DNA binding; predicted protein 1912795 4851473 PICST_69049 Pichia stipitis CBS 6054 predicted protein XP_001387604.1 1912343 D 322104 CDS PICST_52197 126274602 4851474 1916428..1918152 1 NC_009068.1 proline permease (also capable of transporting alanine and glycine); go_component: membrane; go_process: transport; Proline specific permease 1918152 DIP5.5 4851474 DIP5.5 Pichia stipitis CBS 6054 Proline specific permease XP_001387605.1 1916428 D 322104 CDS PICST_85815 126274603 4851475 join(1918625..1920673,1920719..1924180) 1 NC_009068.1 predicted protein 1924180 4851475 PICST_85815 Pichia stipitis CBS 6054 predicted protein XP_001387606.1 1918625 D 322104 CDS PICST_86159 126274604 4851476 join(1924582..1924584,1924703..1925014) 1 NC_009068.1 predicted protein 1925014 4851476 PICST_86159 Pichia stipitis CBS 6054 predicted protein XP_001387607.1 1924582 D 322104 CDS PICST_51244 126274605 4851477 <1926078..1926716 1 NC_009068.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; GTP-binding protein of the rab/ypt family 1926716 YPT52 4851477 YPT52 Pichia stipitis CBS 6054 GTP-binding protein of the rab/ypt family XP_001387608.1 <1926078 D 322104 CDS PICST_74639 126274606 4851478 1927686..1928777 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 1928777 4851478 PICST_74639 Pichia stipitis CBS 6054 predicted protein XP_001387609.1 1927686 D 322104 CDS PICST_68670 126274607 4851479 join(1935516..1936347,1936603..1938140) 1 NC_009068.1 predicted protein 1938140 4851479 PICST_68670 Pichia stipitis CBS 6054 predicted protein XP_001387610.1 1935516 D 322104 CDS PICST_52814 126274608 4851480 complement(1938317..1939321) 1 NC_009068.1 predicted protein 1939321 4851480 PICST_52814 Pichia stipitis CBS 6054 predicted protein XP_001387997.1 1938317 R 322104 CDS PICST_28729 126274609 4851481 1940221..1940799 1 NC_009068.1 predicted protein 1940799 4851481 PICST_28729 Pichia stipitis CBS 6054 predicted protein XP_001387611.1 1940221 D 322104 CDS PICST_28730 126274610 4851482 complement(1941265..1943064) 1 NC_009068.1 predicted protein 1943064 4851482 PICST_28730 Pichia stipitis CBS 6054 predicted protein XP_001387998.1 1941265 R 322104 CDS PICST_52835 126274611 4851483 complement(join(1945283..1945385,1945407..1945643,1945662..1946140,1946183..>1946653)) 1 NC_009068.1 predicted protein 1946140 4851483 PICST_52835 Pichia stipitis CBS 6054 predicted protein XP_001387999.1 1945283 R 322104 CDS PICST_52332 126274612 4851484 complement(join(1947652..1948046,1948107..1948472,1948530..1948685,1948731..1948823,1948896..1949568,1949587..1949718)) 1 NC_009068.1 predicted protein 1949718 4851484 PICST_52332 Pichia stipitis CBS 6054 predicted protein XP_001388000.1 1947652 R 322104 CDS PICST_9166 126274613 4851485 1950775..>1951107 1 NC_009068.1 go_function: molecular function unknown; predicted protein >1951107 4851485 PICST_9166 Pichia stipitis CBS 6054 predicted protein XP_001387612.1 1950775 D 322104 CDS PICST_80251 126274615 4851486 join(1952623..1952892,1953004..1953213,1953241..1953690,1954084..1956186,1956295..1956354) 1 NC_009068.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 1956354 4851486 PICST_80251 Pichia stipitis CBS 6054 predicted protein XP_001387613.1 1952623 D 322104 CDS PICST_64944 126274618 4851487 complement(1957593..1958732) 1 NC_009068.1 go_component: membrane; plasma membrane iron permease 1958732 FTR2 4851487 FTR2 Pichia stipitis CBS 6054 plasma membrane iron permease XP_001388001.1 1957593 R 322104 CDS PICST_28736 126274622 4851488 complement(1961535..1965038) 1 NC_009068.1 predicted protein 1965038 4851488 PICST_28736 Pichia stipitis CBS 6054 predicted protein XP_001388002.1 1961535 R 322104 CDS PICST_85961 126274626 4851489 1965911..1967614 1 NC_009068.1 8th largest subunit of RSC. Rsc8p mediates multiple RSC complex interactions, undergoes dimerization via the C-term coiled-coil segment, associates with SWI2/SNF2 ATPase Sth1p, forms a complex with RSC6p; go_component: nucleus; go_function: DNA binding; eighth largest subunit of RSC 1967614 RSC8 4851489 RSC8 Pichia stipitis CBS 6054 eighth largest subunit of RSC XP_001387614.1 1965911 D 322104 CDS PICST_38176 126274630 4851490 complement(<1968439..>1970388) 1 NC_009068.1 predicted protein >1970388 4851490 PICST_38176 Pichia stipitis CBS 6054 predicted protein XP_001388003.1 <1968439 R 322104 CDS PICST_80765 126274633 4851491 complement(1971992..1972807) 1 NC_009068.1 predicted protein 1972807 4851491 PICST_80765 Pichia stipitis CBS 6054 predicted protein XP_001388004.1 1971992 R 322104 CDS PICST_66527 126274635 4851492 complement(1973390..1974196) 1 NC_009068.1 predicted protein 1974196 4851492 PICST_66527 Pichia stipitis CBS 6054 predicted protein XP_001388005.1 1973390 R 322104 CDS PICST_85825 126274640 4851493 complement(join(1974994..1975760,1976041..1976089)) 1 NC_009068.1 predicted protein 1976089 4851493 PICST_85825 Pichia stipitis CBS 6054 predicted protein XP_001388006.1 1974994 R 322104 CDS PICST_66529 126274642 4851494 complement(join(1976889..1978194,1978594..1978671,1978808..1978830)) 1 NC_009068.1 Cruciform DNA Binding Protein 1 regulation of G-protein function; regulation of G-protein function 1978830 CRP1 4851494 CRP1 Pichia stipitis CBS 6054 regulation of G-protein function XP_001388007.1 1976889 R 322104 CDS PICST_80838 126274646 4851495 complement(join(1980240..1980597,1980643..1980658,1980689..1984121)) 1 NC_009068.1 go_component: membrane; go_function: hedgehog receptor activity; predicted protein 1984121 4851495 PICST_80838 Pichia stipitis CBS 6054 predicted protein XP_001388008.1 1980240 R 322104 CDS PICST_34441 126274649 4851496 join(1985096..1985213,1985382..1986289) 1 NC_009068.1 go_function: zinc ion binding; hydrolase activity; deoxycytidylate deaminase 1986289 DCD1 4851496 DCD1 Pichia stipitis CBS 6054 deoxycytidylate deaminase XP_001387615.1 1985096 D 322104 CDS PICST_80437 126274654 4851497 complement(1986497..1987192) 1 NC_009068.1 Acylpyruvate hydrolase fumarylacetoacetate hydralase; go_function: catalytic activity; go_process: metabolism; fumarylacetoacetate hydralase 1987192 YNQ8 4851497 YNQ8 Pichia stipitis CBS 6054 fumarylacetoacetate hydralase XP_001388009.1 1986497 R 322104 CDS PICST_34443 126274657 4851498 1988060..1989130 1 NC_009068.1 go_component: cytoplasm; go_function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity; go_process: tRNA processing; predicted protein 1989130 4851498 PICST_34443 Pichia stipitis CBS 6054 predicted protein XP_001387616.1 1988060 D 322104 CDS PICST_34444 126274660 4851499 complement(join(1989594..1990207,1990259..1990551,1990582..1991370,1991447,1991549..1991780)) 1 NC_009068.1 similar to pH-response regulator protein 2; Zn finger transcription factor; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; pH-response transcription factor pacC/RIM101-like protein 1991780 RIM101 4851499 RIM101 Pichia stipitis CBS 6054 pH-response transcription factor pacC/RIM101-like protein XP_001388010.1 1989594 R 322104 CDS PICST_28748 126274663 4851500 1993950..1994432 1 NC_009068.1 predicted protein 1994432 4851500 PICST_28748 Pichia stipitis CBS 6054 predicted protein XP_001387617.1 1993950 D 322104 CDS PICST_51286 126274667 4851501 complement(<1995942..1996217) 1 NC_009068.1 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain-containing protein 1996217 WSC4 4851501 WSC4 Pichia stipitis CBS 6054 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain-containing protein XP_001388011.1 <1995942 R 322104 CDS PICST_80147 126274672 4851502 complement(join(1998239..1998487,1998533..1998943,1998959..2000323)) 1 NC_009068.1 conserved hypothetical protein 2000323 4851502 PICST_80147 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001388012.1 1998239 R 322104 CDS PICST_28751 126274675 4851503 join(2000913..2001252,2001427..2001593,2001648..2001947) 1 NC_009068.1 predicted protein 2001947 4851503 PICST_28751 Pichia stipitis CBS 6054 predicted protein XP_001387618.1 2000913 D 322104 CDS PICST_37319 126274679 4851504 2002122..2002340 1 NC_009068.1 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (ABC10-alpha); go_component: nucleus; go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; DNA-directed RNA polymerases small subunit 2002340 RPC10 4851504 RPC10 Pichia stipitis CBS 6054 DNA-directed RNA polymerases small subunit XP_001387619.1 2002122 D 322104 CDS PICST_51649 126274683 4851505 complement(2002714..2004618) 1 NC_009068.1 go_function: ATP binding; DNA mismatch repair 2004618 MLH3 4851505 MLH3 Pichia stipitis CBS 6054 DNA mismatch repair XP_001388013.1 2002714 R 322104 CDS PICST_38489 126274685 4851506 complement(join(2004938..2005606,2010219..2011388)) 1 NC_009068.1 Molecular chaperones HSP70/HSC70, HSP70 superfamily Heat-shock protein 70 (HSP72) (SSA1); Molecular chaperones HSP70/HSC70, HSP70 superfamily Heat-shock protein 70 (HSP72) 2011388 HSP70.3 4851506 HSP70.3 Pichia stipitis CBS 6054 Molecular chaperones HSP70/HSC70, HSP70 superfamily Heat-shock protein 70 (HSP72) XP_001388014.1 2004938 R 322104 CDS PICST_28757 126274689 4851507 join(2011937..2013759,2013914..2013918,2014067..2015079) 1 NC_009068.1 Molecular chaperones HSP70/HSC70, HSP70 superfamily Heat-shock protein 70.4 (HSP72) (SSA1); heat shock protein 70 2015079 HSP70.4 4851507 HSP70.4 Pichia stipitis CBS 6054 heat shock protein 70 XP_001387620.1 2011937 D 322104 CDS PICST_28758 126274693 4851508 2015877..2016977 1 NC_009068.1 putative Heat shock 70 kDa protein 2016977 HSP70.6 4851508 HSP70.6 Pichia stipitis CBS 6054 putative Heat shock 70 kDa protein XP_001387621.1 2015877 D 322104 CDS PICST_80761 126274696 4851509 2017568..2019526 1 NC_009068.1 heat shock protein 70 (SSA1); heat shock protein 70 2019526 SSA2.2 4851509 SSA2.2 Pichia stipitis CBS 6054 heat shock protein 70 XP_001387622.1 2017568 D 322104 CDS PICST_51274 126274699 4851510 complement(join(2019640..2021036,2021055..>2021718)) 1 NC_009068.1 go_component: integral to membrane; sodium/calcium exchanger protein 2021036 CAX7 4851510 CAX7 Pichia stipitis CBS 6054 sodium/calcium exchanger protein XP_001388015.1 2019640 R 322104 CDS PICST_68871 126274701 4851511 join(2023433..2024588,2025099..2025256) 1 NC_009068.1 go_function: hydrolase activity; go_process: metabolism; chitinase 3 precursor 2025256 CHT3 4851511 CHT3 Pichia stipitis CBS 6054 chitinase 3 precursor XP_001387623.1 2023433 D 322104 CDS PICST_28762 126274705 4851512 complement(join(2025390..2025850,2025899..2026211)) 1 NC_009068.1 predicted protein 2026211 4851512 PICST_28762 Pichia stipitis CBS 6054 predicted protein XP_001388016.1 2025390 R 322104 CDS PICST_28763 126274709 4851513 2026627..2027283 1 NC_009068.1 predicted protein 2027283 4851513 PICST_28763 Pichia stipitis CBS 6054 predicted protein XP_001387624.1 2026627 D 322104 CDS PICST_85822 126274713 4851514 2028430..2030598 1 NC_009068.1 NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial precursor; go_function: oxidoreductase activity; oxidoreductase activity, acting on NADH or NADPH; electron transporter activity; iron ion binding; NADH dehydrogenase (ubiquinone) activity; go_process: electron transport; mitochondrial electron transport, NADH to ubiquinone; NADH dehydrogenase (ubiquinone) 78K chain precursor, 5-prime end 2030598 NUO78 4851514 NUO78 Pichia stipitis CBS 6054 NADH dehydrogenase (ubiquinone) 78K chain precursor, 5-prime end XP_001387625.1 2028430 D 322104 CDS PICST_52526 126274717 4851515 join(<2031945..2032202,2032308..2033243,2033280..2034203) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 2034203 4851515 PICST_52526 Pichia stipitis CBS 6054 predicted protein XP_001387626.1 <2031945 D 322104 CDS PICST_28766 126274720 4851516 complement(2034293..2035804) 1 NC_009068.1 go_component: nucleus; go_process: mRNA processing; predicted protein 2035804 4851516 PICST_28766 Pichia stipitis CBS 6054 predicted protein XP_001388017.1 2034293 R 322104 CDS PICST_51634 126274724 4851517 join(2036811..2038503,2038987..2039024) 1 NC_009068.1 predicted protein 2039024 4851517 PICST_51634 Pichia stipitis CBS 6054 predicted protein XP_001387627.1 2036811 D 322104 CDS PICST_52783 126274728 4851518 2039891..2041126 1 NC_009068.1 predicted protein 2041126 4851518 PICST_52783 Pichia stipitis CBS 6054 predicted protein XP_001387628.1 2039891 D 322104 CDS PICST_28769 126274732 4851519 2042354..2044192 1 NC_009068.1 predicted protein 2044192 4851519 PICST_28769 Pichia stipitis CBS 6054 predicted protein XP_001387629.1 2042354 D 322104 CDS PICST_52184 126274736 4851520 join(2047050..2047137,2047236..2047546) 1 NC_009068.1 go_function: methylated-DNA-[protein]-cysteine S-methyltransferase activity; go_process: DNA repair; predicted protein 2047546 4851520 PICST_52184 Pichia stipitis CBS 6054 predicted protein XP_001387630.1 2047050 D 322104 CDS PICST_51473 126274739 4851521 complement(join(<2048001..2048274,2048317..2049210,2049256..2051911,2052053..2052572)) 1 NC_009068.1 predicted protein 2052572 4851521 PICST_51473 Pichia stipitis CBS 6054 predicted protein XP_001388018.1 <2048001 R 322104 CDS PICST_80611 126274742 4851522 complement(2053330..2056650) 1 NC_009068.1 transcription factor, member of the histone acetyltransferase SAGA complex 2056650 SPT7 4851522 SPT7 Pichia stipitis CBS 6054 transcription factor, member of the histone acetyltransferase SAGA complex XP_001388019.1 2053330 R 322104 CDS PICST_80064 126274745 4851523 complement(join(2057628..2058027,2058736..2058779)) 1 NC_009068.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; predicted protein 2058779 4851523 PICST_80064 Pichia stipitis CBS 6054 predicted protein XP_001388020.1 2057628 R 322104 CDS PICST_28774 126274748 4851524 complement(2059666..2060271) 1 NC_009068.1 predicted protein 2060271 4851524 PICST_28774 Pichia stipitis CBS 6054 predicted protein XP_001388021.1 2059666 R 322104 CDS PICST_64954 126274750 4851525 join(2061831..2062351,2062463..2062490,2062647..2064296) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type 2064296 UGA3.1 4851525 UGA3.1 Pichia stipitis CBS 6054 zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type XP_001387631.1 2061831 D 322104 CDS PICST_68812 126274754 4851526 2064788..2066287 1 NC_009068.1 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA); similar to microtubule binding proteins and to X90565_5.cds; nucleolar protein involved in pre- rRNA processing 2066287 SIK1 4851526 SIK1 Pichia stipitis CBS 6054 nucleolar protein involved in pre- rRNA processing XP_001387632.1 2064788 D 322104 CDS PICST_28777 126274757 4851527 complement(2066526..2067173) 1 NC_009068.1 predicted protein 2067173 4851527 PICST_28777 Pichia stipitis CBS 6054 predicted protein XP_001388022.1 2066526 R 322104 CDS PICST_28778 126274758 4851528 complement(2067305..2068432) 1 NC_009068.1 predicted protein 2068432 4851528 PICST_28778 Pichia stipitis CBS 6054 predicted protein XP_001388023.1 2067305 R 322104 CDS PICST_28779 126274761 4851529 complement(2068661..2070355) 1 NC_009068.1 go_component: membrane; go_process: transport; high-affinity glutamine permease 2070355 GNP1 4851529 GNP1 Pichia stipitis CBS 6054 high-affinity glutamine permease XP_001388024.1 2068661 R 322104 CDS PICST_74808 126274763 4851530 2072213..2072761 1 NC_009068.1 predicted protein 2072761 4851530 PICST_74808 Pichia stipitis CBS 6054 predicted protein XP_001387633.1 2072213 D 322104 CDS PICST_28781 126274766 4851531 2074089..2074838 1 NC_009068.1 protein whose overexpression suppresses the synthetic lethality of the hal3 sit4 double mutation 2074838 VHS3.2 4851531 VHS3.2 Pichia stipitis CBS 6054 protein whose overexpression suppresses the synthetic lethality of the hal3 sit4 double mutation XP_001387634.1 2074089 D 322104 CDS PICST_51362 126274769 4851532 2075229..2075576 1 NC_009068.1 predicted protein 2075576 4851532 PICST_51362 Pichia stipitis CBS 6054 predicted protein XP_001387635.1 2075229 D 322104 CDS PICST_66543 126274772 4851533 complement(2075879..2076643) 1 NC_009068.1 predicted protein 2076643 4851533 PICST_66543 Pichia stipitis CBS 6054 predicted protein XP_001388025.1 2075879 R 322104 CDS PICST_51170 126274775 4851534 <2077308..2078165 1 NC_009068.1 predicted protein 2078165 4851534 PICST_51170 Pichia stipitis CBS 6054 predicted protein XP_001387636.1 <2077308 D 322104 CDS PICST_52252 126274778 4851535 complement(join(2078219..2078710,2078783..2079214)) 1 NC_009068.1 go_component: peroxisomal membrane; integral to membrane; predicted protein 2079214 4851535 PICST_52252 Pichia stipitis CBS 6054 predicted protein XP_001388026.1 2078219 R 322104 CDS PICST_75097 126274781 4851536 2079812..2080429 1 NC_009068.1 NADH-ubiquinone oxidoreductase membrane protein; NADH-ubiquinone oxidoreductase 2080429 NUO21.1 4851536 NUO21.1 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase XP_001387637.1 2079812 D 322104 CDS PICST_80533 126274784 4851537 join(2081287..2083479,2083525..2083863) 1 NC_009068.1 predicted protein 2083863 4851537 PICST_80533 Pichia stipitis CBS 6054 predicted protein XP_001387638.1 2081287 D 322104 CDS PICST_80857 126274787 4851538 2084567..2085334 1 NC_009068.1 go_function: electron transporter activity; go_process: electron transport; predicted protein 2085334 4851538 PICST_80857 Pichia stipitis CBS 6054 predicted protein XP_001387639.1 2084567 D 322104 CDS PICST_28789 126274790 4851539 complement(2085588..2087054) 1 NC_009068.1 predicted protein 2087054 4851539 PICST_28789 Pichia stipitis CBS 6054 predicted protein XP_001388027.1 2085588 R 322104 CDS PICST_38956 126274793 4851540 2087551..2088429 1 NC_009068.1 predicted protein 2088429 4851540 PICST_38956 Pichia stipitis CBS 6054 predicted protein XP_001387640.1 2087551 D 322104 CDS PICST_51192 126274795 4851541 <2088714..2089730 1 NC_009068.1 go_function: catalytic activity; predicted protein 2089730 4851541 PICST_51192 Pichia stipitis CBS 6054 predicted protein XP_001387641.1 <2088714 D 322104 CDS PICST_74478 126274798 4851542 complement(<2091017..2091724) 1 NC_009068.1 predicted protein 2091724 4851542 PICST_74478 Pichia stipitis CBS 6054 predicted protein XP_001388028.1 <2091017 R 322104 CDS PICST_37533 126274801 4851543 complement(2092075..2093532) 1 NC_009068.1 predicted protein 2093532 4851543 PICST_37533 Pichia stipitis CBS 6054 predicted protein XP_001388029.1 2092075 R 322104 CDS PICST_37559 126274804 4851544 complement(2093775..2094812) 1 NC_009068.1 predicted protein 2094812 4851544 PICST_37559 Pichia stipitis CBS 6054 predicted protein XP_001388030.1 2093775 R 322104 CDS PICST_28795 126274808 4851545 complement(join(2095998..2099674,2099741..2099804)) 1 NC_009068.1 go_function: metalloendopeptidase activity; go_process: proteolysis and peptidolysis; predicted protein 2099804 4851545 PICST_28795 Pichia stipitis CBS 6054 predicted protein XP_001388031.1 2095998 R 322104 CDS PICST_66548 126274812 4851546 2100514..2101047 1 NC_009068.1 hypothetical beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain-containing protein 2101047 4851546 PICST_66548 Pichia stipitis CBS 6054 hypothetical beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain-containing protein XP_001387642.1 2100514 D 322104 CDS PICST_28797 126274815 4851547 join(2102120..2102519,2102582..2102616) 1 NC_009068.1 predicted protein 2102616 4851547 PICST_28797 Pichia stipitis CBS 6054 predicted protein XP_001387643.1 2102120 D 322104 CDS PICST_28798 126274819 4851548 join(2104628..2104655,2104744..2105570) 1 NC_009068.1 cell wall integrity and stress response component 2 2105570 WSC2 4851548 WSC2 Pichia stipitis CBS 6054 cell wall integrity and stress response component 2 XP_001387644.1 2104628 D 322104 CDS PICST_52710 126274822 4851549 join(2106548..2107302,2107327..2108112,2108165..2108211,2108235..2108695) 1 NC_009068.1 predicted protein 2108695 4851549 PICST_52710 Pichia stipitis CBS 6054 predicted protein XP_001387645.1 2106548 D 322104 CDS PICST_37797 126274825 4851550 2109602..2112046 1 NC_009068.1 beta-glucosidase precursor; glycosyl hydrolase family 3; go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; beta-glucosidase 2112046 BGL4 4851550 BGL4 Pichia stipitis CBS 6054 beta-glucosidase XP_001387646.1 2109602 D 322104 CDS PICST_28802 126274828 4851551 2113737..2115434 1 NC_009068.1 similar to suppressor of gal11 null; MFS efflux transporter 2115434 SGE1.4 4851551 SGE1.4 Pichia stipitis CBS 6054 MFS efflux transporter XP_001387647.1 2113737 D 322104 CDS PICST_28803 126274832 4851552 2115752..2117611 1 NC_009068.1 predicted protein 2117611 4851552 PICST_28803 Pichia stipitis CBS 6054 predicted protein XP_001387648.1 2115752 D 322104 CDS PICST_74461 126274835 4851553 2118124..2120166 1 NC_009068.1 go_component: nucleus; go_function: DNA binding; DNA-directed DNA polymerase activity; go_process: DNA replication; DNA-directed DNA polymerase epsilon, subunit B 2120166 DPB2 4851553 DPB2 Pichia stipitis CBS 6054 DNA-directed DNA polymerase epsilon, subunit B XP_001387649.1 2118124 D 322104 CDS PICST_37880 126274839 4851554 2120503..2121492 1 NC_009068.1 Type II proteins geranylgeranyltransferase beta subunit (Type II protein geranyl-geranyltransferase beta subunit) (GGTase-II-beta) (PGGT) (YPT1/SEC4 proteins geranylgeranyltransferase beta subunit); go_function: catalytic activity; Type II proteins geranylgeranyltransferase beta subunit 2121492 BET2.2 4851554 BET2.2 Pichia stipitis CBS 6054 Type II proteins geranylgeranyltransferase beta subunit XP_001387650.1 2120503 D 322104 CDS PICST_28806 126274842 4851555 complement(2122683..2123564) 1 NC_009068.1 go_component: nucleus; go_function: DNA binding; predicted protein 2123564 4851555 PICST_28806 Pichia stipitis CBS 6054 predicted protein XP_001388032.1 2122683 R 322104 CDS PICST_86369 126274846 4851556 complement(join(2126482..2128067,2128170..2129016)) 1 NC_009068.1 go_function: ATP binding; member of the AAA ATPase family of proteins 2129016 SAP11 4851556 SAP11 Pichia stipitis CBS 6054 member of the AAA ATPase family of proteins XP_001388033.1 2126482 R 322104 CDS PICST_28808 126274849 4851557 2130299..>2130930 1 NC_009068.1 predicted protein >2130930 4851557 PICST_28808 Pichia stipitis CBS 6054 predicted protein XP_001387651.1 2130299 D 322104 CDS PICST_37347 126274852 4851558 complement(2131033..2132742) 1 NC_009068.1 similar to MFS efflux transporter suppressor of gal11 null; suppressor of gal11 null 2132742 SGE1.3 4851558 SGE1.3 Pichia stipitis CBS 6054 suppressor of gal11 null XP_001388034.1 2131033 R 322104 CDS PICST_37376 126274855 4851559 2136636..2137700 1 NC_009068.1 aryl-alcohol dehydrogenases 2137700 AAD2 4851559 AAD2 Pichia stipitis CBS 6054 aryl-alcohol dehydrogenases XP_001387652.1 2136636 D 322104 CDS PICST_86133 126274858 4851560 join(2139850..2140149,2140231..2141106) 1 NC_009068.1 Nicotinamide-nucleotide adenylyltransferase 1 (NAD(+) pyrophosphorylase 1) (NAD(+) diphosphorylase 1) (NMN adenylyltransferase 1); go_function: nucleotidyltransferase activity; go_process: biosynthesis; NAD(+) salvage pathway 2141106 NMA1 4851560 NMA1 Pichia stipitis CBS 6054 NAD(+) salvage pathway XP_001387653.1 2139850 D 322104 CDS PICST_52712 126274861 4851561 complement(2141455..2143413) 1 NC_009068.1 predicted protein 2143413 4851561 PICST_52712 Pichia stipitis CBS 6054 predicted protein XP_001388035.1 2141455 R 322104 CDS PICST_68659 126274863 4851562 complement(2143823..2146135) 1 NC_009068.1 3-isopropylmalate dehydratase [KO:K01702]; go_function: lyase activity; hydro-lyase activity; go_function: lyase activity; hydro-lyase activity; go_process: metabolism; go_process: metabolism; 3-isopropylmalate dehydratase 2146135 LEU1 4851562 LEU1 Pichia stipitis CBS 6054 3-isopropylmalate dehydratase XP_001388036.1 2143823 R 322104 CDS PICST_51711 126274866 4851563 join(<2149095..2150189,2150205..2150813,2150838..2151344) 1 NC_009068.1 go_process: cell cycle; predicted protein 2151344 4851563 PICST_51711 Pichia stipitis CBS 6054 predicted protein XP_001387654.1 <2149095 D 322104 CDS PICST_39216 126274869 4851564 2152286..2153293 1 NC_009068.1 induced by osmotic stress; Similar to NADPH-dependent methylglyoxal reductase GRE2; GRE2-like protein 2153293 GRP2.3 4851564 GRP2.3 Pichia stipitis CBS 6054 GRE2-like protein XP_001387655.1 2152286 D 322104 CDS PICST_34478 126274873 4851565 2153925..2155727 1 NC_009068.1 predicted protein 2155727 4851565 PICST_34478 Pichia stipitis CBS 6054 predicted protein XP_001387656.1 2153925 D 322104 CDS PICST_66553 126274876 4851566 complement(join(2156307..2156371,2156472..2160618)) 1 NC_009068.1 predicted protein 2160618 4851566 PICST_66553 Pichia stipitis CBS 6054 predicted protein XP_001388037.1 2156307 R 322104 CDS PICST_52325 126274880 4851567 complement(2161048..2162355) 1 NC_009068.1 NADH:flavin oxidoreductase/12-oxophytodienoate reductase NAPDH dehydrogenase (old yellow enzyme); go_function: oxidoreductase activity; go_process: electron transport; NAPDH dehydrogenase (old yellow enzyme) (OYE32) (OYE32) 2162355 OYE3.3 4851567 OYE3.3 Pichia stipitis CBS 6054 NAPDH dehydrogenase (old yellow enzyme) (OYE32) (OYE32) XP_001388038.1 2161048 R 322104 CDS PICST_28819 126274883 4851568 2163135..2164652 1 NC_009068.1 predicted protein 2164652 4851568 PICST_28819 Pichia stipitis CBS 6054 predicted protein XP_001387657.1 2163135 D 322104 CDS PICST_51204 126274886 4851569 complement(2164796..2165056) 1 NC_009068.1 go_function: transcription regulator activity; predicted protein 2165056 4851569 PICST_51204 Pichia stipitis CBS 6054 predicted protein XP_001388039.1 2164796 R 322104 CDS PICST_74324 126274889 4851570 complement(2165668..2169027) 1 NC_009068.1 predicted protein 2169027 4851570 PICST_74324 Pichia stipitis CBS 6054 predicted protein XP_001388040.1 2165668 R 322104 CDS PICST_37810 126274892 4851571 complement(2172276..2172827) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; RNA binding; go_process: protein biosynthesis; predicted protein 2172827 4851571 PICST_37810 Pichia stipitis CBS 6054 predicted protein XP_001388041.1 2172276 R 322104 CDS PICST_52146 126274895 4851572 2173093..2173773 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2173773 4851572 PICST_52146 Pichia stipitis CBS 6054 predicted protein XP_001387658.1 2173093 D 322104 CDS PICST_34483 126274899 4851573 2174218..2175006 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2175006 4851573 PICST_34483 Pichia stipitis CBS 6054 predicted protein XP_001387659.1 2174218 D 322104 CDS PICST_28825 126274902 4851574 complement(join(<2175146..2175747,2175772..2175933,2176320..2176383)) 1 NC_009068.1 hypothetical serine-rich protein 2176383 4851574 PICST_28825 Pichia stipitis CBS 6054 hypothetical serine-rich protein XP_001388042.1 <2175146 R 322104 CDS PICST_28827 126274904 4851575 complement(2181033..2182238) 1 NC_009068.1 predicted protein 2182238 4851575 PICST_28827 Pichia stipitis CBS 6054 predicted protein XP_001388043.1 2181033 R 322104 CDS PICST_86741 126274909 4851576 complement(2187018..2190263) 1 NC_009068.1 go_component: nucleus; nuclear pore; cytoplasm; go_function: protein transporter activity; go_process: protein-nucleus import, docking; predicted protein 2190263 4851576 PICST_86741 Pichia stipitis CBS 6054 predicted protein XP_001387004.1 2187018 R 322104 CDS PICST_40132 126274913 4851577 complement(2191672..2192685) 1 NC_009068.1 Malate dehydrogenase, mitochondrial precursor; go_function: oxidoreductase activity; NAD-dependent malate dehydrogenase 2192685 MDHM 4851577 MDHM Pichia stipitis CBS 6054 NAD-dependent malate dehydrogenase XP_001387005.1 2191672 R 322104 CDS PICST_64968 126274916 4851578 2195899..2198334 1 NC_009068.1 go_function: alpha,alpha-trehalase activity; go_process: trehalose metabolism; Neutral trehalase (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) 2198334 NTH2 4851578 NTH2 Pichia stipitis CBS 6054 Neutral trehalase (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) XP_001386768.1 2195899 D 322104 CDS PICST_86778 126274920 4851579 2199002..2200399 1 NC_009068.1 go_process: isoprenoid biosynthesis; hexaprenyl pyrophosphate synthetase, mitochondrial precursor (HPS) 2200399 COQ1 4851579 COQ1 Pichia stipitis CBS 6054 hexaprenyl pyrophosphate synthetase, mitochondrial precursor (HPS) XP_001386769.1 2199002 D 322104 CDS PICST_80880 126274923 4851580 2201461..2202060 1 NC_009068.1 predicted protein 2202060 4851580 PICST_80880 Pichia stipitis CBS 6054 predicted protein XP_001386770.1 2201461 D 322104 CDS PICST_81069 126274926 4851581 join(2203155..2203877,2203899..2207084) 1 NC_009068.1 positive regulatory protein of phosphate pathway 2207084 PHO81 4851581 PHO81 Pichia stipitis CBS 6054 positive regulatory protein of phosphate pathway XP_001386771.1 2203155 D 322104 CDS PICST_53654 126274929 4851582 complement(join(2207217..2209096,2209118..>2209205)) 1 NC_009068.1 predicted protein 2209096 4851582 PICST_53654 Pichia stipitis CBS 6054 predicted protein XP_001387006.1 2207217 R 322104 CDS PICST_28836 126274932 4851583 complement(2209661..2211028) 1 NC_009068.1 go_function: ATP binding; predicted protein 2211028 4851583 PICST_28836 Pichia stipitis CBS 6054 predicted protein XP_001387007.1 2209661 R 322104 CDS PICST_53771 126274936 4851584 join(2211709..2212986,2213032..2213205) 1 NC_009068.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 2213205 4851584 PICST_53771 Pichia stipitis CBS 6054 predicted protein XP_001386772.1 2211709 D 322104 CDS PICST_34492 126274941 4851585 complement(2213310..2214560) 1 NC_009068.1 Argininosuccinate synthase (Citrulline--aspartate ligase); go_function: argininosuccinate synthase activity; ATP binding; go_process: arginine biosynthesis; argininosuccinate synthetase 2214560 ARG1 4851585 ARG1 Pichia stipitis CBS 6054 argininosuccinate synthetase XP_001387008.1 2213310 R 322104 CDS PICST_28839 126274944 4851586 join(2216262..2216342,2216406..2216540,2216596..2216967) 1 NC_009068.1 predicted protein 2216967 4851586 PICST_28839 Pichia stipitis CBS 6054 predicted protein XP_001386773.1 2216262 D 322104 CDS PICST_80923 126274947 4851587 join(2217650..2218021,2218063..2218088,2218117..2218336,2218362..2218366,2218471..2219026,2219240..2219604,2219656..2219737) 1 NC_009068.1 predicted protein 2219737 4851587 PICST_80923 Pichia stipitis CBS 6054 predicted protein XP_001386774.1 2217650 D 322104 CDS PICST_81158 126274951 4851588 2221833..2228507 1 NC_009068.1 homologous to acetyl-coenzyme-A carboxylase [KO:K01961]; go_component: biotin carboxylase complex; go_component: biotin carboxylase complex; go_function: ligase activity; biotin carboxylase activity; ATP binding; go_function: ligase activity; biotin carboxylase activity; ATP binding; go_process: metabolism; go_process: metabolism; acetyl-coenzyme-A carboxylase 2228507 ACC1 4851588 ACC1 Pichia stipitis CBS 6054 acetyl-coenzyme-A carboxylase XP_001386775.1 2221833 D 322104 CDS PICST_28842 126274954 4851589 2228700..2229896 1 NC_009068.1 go_function: subtilase activity; go_process: proteolysis and peptidolysis; predicted protein 2229896 4851589 PICST_28842 Pichia stipitis CBS 6054 predicted protein XP_001386776.1 2228700 D 322104 CDS PICST_86938 126274958 4851590 2230753..2235675 1 NC_009068.1 1,3-beta-glucan synthase component (BGS2); go_component: 1,3-beta-glucan synthase complex; membrane; go_function: 1,3-beta-glucan synthase activity; go_process: beta-1,3 glucan biosynthesis; 1,3-beta-glucan synthase component 2235675 GSC2 4851590 GSC2 Pichia stipitis CBS 6054 1,3-beta-glucan synthase component XP_001386777.1 2230753 D 322104 CDS PICST_40023 126274961 4851591 complement(<2236479..2236685) 1 NC_009068.1 predicted protein 2236685 4851591 PICST_40023 Pichia stipitis CBS 6054 predicted protein XP_001387009.1 <2236479 R 322104 CDS PICST_39512 126274964 4851592 join(2243459..2243819,2243913..2244196,2244250..2244429) 1 NC_009068.1 go_function: molecular function unknown; predicted protein 2244429 4851592 PICST_39512 Pichia stipitis CBS 6054 predicted protein XP_001386778.1 2243459 D 322104 CDS PICST_28847 126274967 4851593 complement(2244594..2244950) 1 NC_009068.1 predicted protein 2244950 4851593 PICST_28847 Pichia stipitis CBS 6054 predicted protein XP_001387010.1 2244594 R 322104 CDS PICST_53071 126274971 4851594 2245305..2248112 1 NC_009068.1 predicted protein 2248112 4851594 PICST_53071 Pichia stipitis CBS 6054 predicted protein XP_001386779.1 2245305 D 322104 CDS PICST_81231 126274977 4851595 2250077..2252176 1 NC_009068.1 go_function: glycogen (starch) synthase activity; go_process: glycogen biosynthesis; glycogen (starch) synthase 2252176 GSY1 4851595 GSY1 Pichia stipitis CBS 6054 glycogen (starch) synthase XP_001386780.1 2250077 D 322104 CDS PICST_28850 126274981 4851596 complement(2253190..2254023) 1 NC_009068.1 predicted protein 2254023 4851596 PICST_28850 Pichia stipitis CBS 6054 predicted protein XP_001387011.1 2253190 R 322104 CDS PICST_28851 126274984 4851597 join(2254300..2254438,2254479..2254919,2255360..2256594) 1 NC_009068.1 predicted protein 2256594 4851597 PICST_28851 Pichia stipitis CBS 6054 predicted protein XP_001386781.1 2254300 D 322104 CDS PICST_28852 126274988 4851598 complement(2258348..2259466) 1 NC_009068.1 carboxy methyl transferase for protein phosphatase 2A 2259466 PPM1 4851598 PPM1 Pichia stipitis CBS 6054 carboxy methyl transferase for protein phosphatase 2A XP_001387012.1 2258348 R 322104 CDS PICST_53251 126274990 4851599 complement(2259919..2260698) 1 NC_009068.1 tRNA methyltransferase, catalyzes the esterification of modified uridine nucleotides in tRNAs, creating 5-methylcarbonylmethyluridine in tRNA(Arg3) and 5-methylcarbonylmethyl-2-thiouridine in tRNA(Glu) may have a role in stress response; tRNA methyltransferase, has a role in tRNA modification 2260698 TRM9 4851599 TRM9 Pichia stipitis CBS 6054 tRNA methyltransferase, has a role in tRNA modification XP_001387013.1 2259919 R 322104 CDS PICST_53762 126274994 4851600 <2260993..>2261328 1 NC_009068.1 predicted protein >2261328 4851600 PICST_53762 Pichia stipitis CBS 6054 predicted protein XP_001386782.1 <2260993 D 322104 CDS PICST_40263 126274997 4851601 2262717..2263490 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription; Transcription initiation factor TFIID subunit 11 (TBP-associated factor 11) (TBP-associated factor 40 kDa) (P40) (TAFII-40) (TAFII40) 2263490 TAF11 4851601 TAF11 Pichia stipitis CBS 6054 Transcription initiation factor TFIID subunit 11 (TBP-associated factor 11) (TBP-associated factor 40 kDa) (P40) (TAFII-40) (TAFII40) XP_001386783.1 2262717 D 322104 CDS PICST_53992 126275001 4851602 2263784..>2266057 1 NC_009068.1 similar to CYP1/HAP1 activatory protein; Zinc finger transcription factor involved in the complex regulation of gene expression in response to levels of heme and oxygen In S. cerevisiae the S288C sequence differs from other strain backgrounds due to a Ty1 insertion in the carboxy terminus. Note that in P. stipitis CBS 6054 an insertional element also follows this sequence; go_component: nucleus; go_function: transcription factor activity; zinc ion binding; DNA binding; go_process: regulation of transcription, DNA-dependent; transcription; CYP1/HAP1-like protein >2266057 HAP1.3 4851602 HAP1.3 Pichia stipitis CBS 6054 CYP1/HAP1-like protein XP_001386784.1 2263784 D 322104 CDS PICST_28859 126275004 4851603 2279263..2279595 1 NC_009068.1 predicted protein 2279595 4851603 PICST_28859 Pichia stipitis CBS 6054 predicted protein XP_001386785.1 2279263 D 322104 CDS PICST_28862 126275008 4851604 2292409..2293089 1 NC_009068.1 ATP-dependent RNA helicase part of transposon polyprotein 5 (Tps5); similar to Germ Line Helicase 2; go_function: nucleic acid binding; ATP-dependent RNA helicase 2293089 GHL2 4851604 GHL2 Pichia stipitis CBS 6054 ATP-dependent RNA helicase XP_001386786.1 2292409 D 322104 CDS PICST_53466 126275012 4851605 complement(2307684..>2309921) 1 NC_009068.1 Transfers mannose residues from dolichyl phosphate-D-mannose to specific serine/threonine residues of proteins in the secretory pathway; go_component: membrane; go_function: mannosyltransferase activity; go_process: O-linked glycosylation; protein mannosyltransferase >2309921 PTM6 4851605 PTM6 Pichia stipitis CBS 6054 protein mannosyltransferase XP_001387014.1 2307684 R 322104 CDS PICST_53121 126275016 4851606 join(<2312480..2313574,2313632..2313994) 1 NC_009068.1 Golgi alpha-1,2- mannosyltransferase 2313994 MNN23 4851606 MNN23 Pichia stipitis CBS 6054 Golgi alpha-1,2- mannosyltransferase XP_001386787.1 <2312480 D 322104 CDS PICST_40055 126275020 4851607 complement(join(2314183..2315038,2315114..2316684)) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; Serine/threonine-protein kinase ATG1 (Autophagy-related protein 1) 2316684 ATG1 4851607 ATG1 Pichia stipitis CBS 6054 Serine/threonine-protein kinase ATG1 (Autophagy-related protein 1) XP_001387015.1 2314183 R 322104 CDS PICST_75133 126275023 4851608 join(2318689..2321239,2321282..2328060) 1 NC_009068.1 vacuolar sorting 2328060 VPS13 4851608 VPS13 Pichia stipitis CBS 6054 vacuolar sorting XP_001386788.1 2318689 D 322104 CDS PICST_52982 126275026 4851609 complement(2328085..>2329131) 1 NC_009068.1 Formyl-Methionyl-tRNA Transformylase; go_function: hydroxymethyl-, formyl- and related transferase activity; go_process: biosynthesis; methionyl-tRNA transformylase >2329131 FMT1 4851609 FMT1 Pichia stipitis CBS 6054 methionyl-tRNA transformylase XP_001387016.1 2328085 R 322104 CDS PICST_53508 126275029 4851610 complement(join(2329598..2332131,2332174..2332231)) 1 NC_009068.1 nvolved in the transcription of 35S rRNA genes by RNA polymerase I; RNA polymerase I transcription factor 2332231 RNN1 4851610 RNN1 Pichia stipitis CBS 6054 RNA polymerase I transcription factor XP_001387017.1 2329598 R 322104 CDS PICST_39865 126275032 4851611 2332412..2334913 1 NC_009068.1 go_function: mannosyl-oligosaccharide glucosidase activity; go_process: oligosaccharide metabolism; Mannosyl-oligosaccharide glucosidase (Processing A-glucosidase I) (Glucosidase I) 2334913 CWH41 4851611 CWH41 Pichia stipitis CBS 6054 Mannosyl-oligosaccharide glucosidase (Processing A-glucosidase I) (Glucosidase I) XP_001386789.1 2332412 D 322104 CDS PICST_69669 126275035 4851612 complement(2334977..2337079) 1 NC_009068.1 tryptophan synthetase (TRPB); go_function: tryptophan synthase activity; lyase activity; go_process: tryptophan metabolism; amino acid metabolism; tryptophan synthetase 2337079 TRP5 4851612 TRP5 Pichia stipitis CBS 6054 tryptophan synthetase XP_001387018.1 2334977 R 322104 CDS PICST_64978 126275039 4851613 complement(join(2337439..2337525,2337637..2338014)) 1 NC_009068.1 predicted protein 2338014 4851613 PICST_64978 Pichia stipitis CBS 6054 predicted protein XP_001387019.1 2337439 R 322104 CDS PICST_28875 126275042 4851614 complement(2339110..2340282) 1 NC_009068.1 predicted protein 2340282 4851614 PICST_28875 Pichia stipitis CBS 6054 predicted protein XP_001387020.1 2339110 R 322104 CDS PICST_28876 126275046 4851615 complement(join(2340704..2341150,2341346..2341348)) 1 NC_009068.1 go_function: calcium ion binding; calmodulin 2341348 CMD1 4851615 CMD1 Pichia stipitis CBS 6054 calmodulin XP_001387021.1 2340704 R 322104 CDS PICST_28877 126275049 4851616 2341751..2345107 1 NC_009068.1 Protein required for mutagenesis by physical and chemical agents; go_component: intracellular; go_process: DNA repair; DNA repair protein 2345107 REV1 4851616 REV1 Pichia stipitis CBS 6054 DNA repair protein XP_001386790.1 2341751 D 322104 CDS PICST_53146 126275052 4851617 join(2345600..2345873,2345910..2346832) 1 NC_009068.1 predicted protein 2346832 4851617 PICST_53146 Pichia stipitis CBS 6054 predicted protein XP_001386791.1 2345600 D 322104 CDS PICST_39314 126275056 4851618 complement(2346849..2348243) 1 NC_009068.1 Chitobiosyldiphosphodolichol beta-mannosyltransferase; go_process: biosynthesis; beta-mannosyltransferase 2348243 ALG1 4851618 ALG1 Pichia stipitis CBS 6054 beta-mannosyltransferase XP_001387022.1 2346849 R 322104 CDS PICST_28879 126275060 4851619 complement(2349185..2352496) 1 NC_009068.1 predicted protein 2352496 4851619 PICST_28879 Pichia stipitis CBS 6054 predicted protein XP_001387023.1 2349185 R 322104 CDS PICST_39806 126275063 4851620 2353664..2354329 1 NC_009068.1 predicted protein 2354329 4851620 PICST_39806 Pichia stipitis CBS 6054 predicted protein XP_001386792.1 2353664 D 322104 CDS PICST_53424 126275066 4851621 complement(2354464..2355669) 1 NC_009068.1 predicted protein 2355669 4851621 PICST_53424 Pichia stipitis CBS 6054 predicted protein XP_001387024.1 2354464 R 322104 CDS PICST_34508 126275071 4851622 2356897..2358312 1 NC_009068.1 predicted protein 2358312 4851622 PICST_34508 Pichia stipitis CBS 6054 predicted protein XP_001386793.1 2356897 D 322104 CDS PICST_40072 126275074 4851623 complement(join(<2360461..2360955,2361049..2361298,2361461..2365157,2365263..2366697)) 1 NC_009068.1 predicted protein 2366697 4851623 PICST_40072 Pichia stipitis CBS 6054 predicted protein XP_001387025.1 <2360461 R 322104 CDS PICST_53820 126275077 4851624 complement(join(2367928..2368288,2368313..2368455,2368498..2369160,2369221..2369589,2369629..>2371644)) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 2369589 4851624 PICST_53820 Pichia stipitis CBS 6054 predicted protein XP_001387026.1 2367928 R 322104 CDS PICST_52988 126275080 4851625 join(2373750..2375048,2375061..2375300) 1 NC_009068.1 predicted protein 2375300 4851625 PICST_52988 Pichia stipitis CBS 6054 predicted protein XP_001386794.1 2373750 D 322104 CDS PICST_53664 126275084 4851626 complement(2375409..2375948) 1 NC_009068.1 go_function: RNA binding; predicted protein 2375948 4851626 PICST_53664 Pichia stipitis CBS 6054 predicted protein XP_001387027.1 2375409 R 322104 CDS PICST_53391 126275088 4851627 complement(join(<2377181..2377537,2377604..>2380069)) 1 NC_009068.1 go_function: nucleic acid binding; helicase activity; ATP binding; type III site-specific deoxyribonuclease activity; go_process: DNA restriction-modification system; predicted protein 2377537 4851627 PICST_53391 Pichia stipitis CBS 6054 predicted protein XP_001387028.1 <2377181 R 322104 CDS PICST_28888 126275090 4851628 2381524..2382489 1 NC_009068.1 predicted protein 2382489 4851628 PICST_28888 Pichia stipitis CBS 6054 predicted protein XP_001386795.1 2381524 D 322104 CDS PICST_28889 126275093 4851629 complement(2382655..2384220) 1 NC_009068.1 predicted protein 2384220 4851629 PICST_28889 Pichia stipitis CBS 6054 predicted protein XP_001387029.1 2382655 R 322104 CDS PICST_28890 126275096 4851630 complement(2384690..2385163) 1 NC_009068.1 predicted protein 2385163 4851630 PICST_28890 Pichia stipitis CBS 6054 predicted protein XP_001387030.1 2384690 R 322104 CDS PICST_75213 126275099 4851631 complement(2385306..2387342) 1 NC_009068.1 Yeast Nucleoside Diphosphatase Golgi apyrase (ATP-diphosphatase) (Adenosine diphosphatase) (ADPase) (ATP-diphosphohydrolase) (Golgi nucleoside diphosphatase); go_function: hydrolase activity; Yeast Nucleoside Diphosphatase 2387342 YND1 4851631 YND1 Pichia stipitis CBS 6054 Yeast Nucleoside Diphosphatase XP_001387031.1 2385306 R 322104 CDS PICST_28892 126275103 4851632 join(2387666..2387938,2387966..2389054) 1 NC_009068.1 predicted protein 2389054 4851632 PICST_28892 Pichia stipitis CBS 6054 predicted protein XP_001386796.1 2387666 D 322104 CDS PICST_28893 126275106 4851633 complement(2389968..2391206) 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 2391206 4851633 PICST_28893 Pichia stipitis CBS 6054 predicted protein XP_001387032.1 2389968 R 322104 CDS PICST_81254 126275108 4851634 complement(join(2392309..2396274,2396347..2396427)) 1 NC_009068.1 predicted protein 2396427 4851634 PICST_81254 Pichia stipitis CBS 6054 predicted protein XP_001387033.1 2392309 R 322104 CDS PICST_40066 126275112 4851635 complement(<2397879..2398460) 1 NC_009068.1 predicted protein 2398460 4851635 PICST_40066 Pichia stipitis CBS 6054 predicted protein XP_001387034.1 <2397879 R 322104 CDS PICST_28896 126275115 4851636 complement(2403374..2404186) 1 NC_009068.1 predicted protein 2404186 4851636 PICST_28896 Pichia stipitis CBS 6054 predicted protein XP_001387035.1 2403374 R 322104 CDS PICST_87014 126275117 4851637 join(2408343..2408985,2409052..2409948,2409985..2410310) 1 NC_009068.1 go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; predicted protein 2410310 4851637 PICST_87014 Pichia stipitis CBS 6054 predicted protein XP_001386797.1 2408343 D 322104 CDS PICST_28899 126275120 4851638 complement(2415702..2416313) 1 NC_009068.1 predicted protein 2416313 4851638 PICST_28899 Pichia stipitis CBS 6054 predicted protein XP_001387036.1 2415702 R 322104 CDS PICST_53938 126275122 4851639 complement(2419529..2421238) 1 NC_009068.1 predicted protein 2421238 4851639 PICST_53938 Pichia stipitis CBS 6054 predicted protein XP_001387037.1 2419529 R 322104 CDS PICST_53355 126275124 4851640 join(2421811..2421996,2422048..2422077,2422099..2423385) 1 NC_009068.1 ATP-dependent RNA helicase DBP5 (Helicase CA5/6); go_function: nucleic acid binding; helicase activity; ATP binding; RNA helicase required for poly(A+) mRNA export 2423385 DBP5 4851640 DBP5 Pichia stipitis CBS 6054 RNA helicase required for poly(A+) mRNA export XP_001386798.1 2421811 D 322104 CDS PICST_87011 126275128 4851641 complement(join(2423560..2423789,2423865..>2424525)) 1 NC_009068.1 go_function: superoxide dismutase activity; metal ion binding; go_process: superoxide metabolism; Mn-superoxide dismutase 2423789 SOD4.2 4851641 SOD4.2 Pichia stipitis CBS 6054 Mn-superoxide dismutase XP_001387038.1 2423560 R 322104 CDS PICST_39747 126275131 4851642 complement(join(2425868..2426939,2427096..2427184)) 1 NC_009068.1 predicted protein 2427184 4851642 PICST_39747 Pichia stipitis CBS 6054 predicted protein XP_001387039.1 2425868 R 322104 CDS PICST_28904 126275134 4851643 complement(2428197..2428550) 1 NC_009068.1 predicted protein 2428550 4851643 PICST_28904 Pichia stipitis CBS 6054 predicted protein XP_001387040.1 2428197 R 322104 CDS PICST_66581 126275136 4851644 complement(2430638..2433022) 1 NC_009068.1 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain-containing protein 2433022 RBP6 4851644 RBP6 Pichia stipitis CBS 6054 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain-containing protein XP_001387041.1 2430638 R 322104 CDS PICST_39759 126275139 4851645 2437024..2439201 1 NC_009068.1 Acyl-coenzyme A oxidase 2 (Acyl-CoA oxidase 2) (PXP-2); go_component: peroxisome; go_function: oxidoreductase activity; acyl-CoA oxidase activity; go_process: electron transport; fatty acid beta-oxidation; Acyl-coenzyme A oxidase (Acyl-CoA oxidase) 2439201 ACOX2 4851645 ACOX2 Pichia stipitis CBS 6054 Acyl-coenzyme A oxidase (Acyl-CoA oxidase) XP_001386799.1 2437024 D 322104 CDS PICST_28907 126275143 4851646 2439460..2440800 1 NC_009068.1 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases; go_function: monooxygenase activity; go_process: aromatic compound metabolism; Salicylate hydroxylase (Salicylate 1-monooxygenase) 2440800 NHG4 4851646 NHG4 Pichia stipitis CBS 6054 Salicylate hydroxylase (Salicylate 1-monooxygenase) XP_001386800.1 2439460 D 322104 CDS PICST_75424 126275146 4851647 complement(2441561..2443705) 1 NC_009068.1 go_component: peroxisome; go_function: oxidoreductase activity; acyl-CoA oxidase activity; go_process: electron transport; fatty acid beta-oxidation; Acyl-coenzyme A oxidase 4 (Acyl-CoA oxidase 4) (AOX 4) 2443705 POX1 4851647 POX1 Pichia stipitis CBS 6054 Acyl-coenzyme A oxidase 4 (Acyl-CoA oxidase 4) (AOX 4) XP_001387042.1 2441561 R 322104 CDS PICST_81269 126275149 4851648 2448441..2449685 1 NC_009068.1 predicted protein 2449685 4851648 PICST_81269 Pichia stipitis CBS 6054 predicted protein XP_001386801.1 2448441 D 322104 CDS PICST_53629 126275152 4851649 2449962..2453882 1 NC_009068.1 DNA repair protein RAD50, ABC-type ATPase/SMC superfamily; DNA repair protein 2453882 RAD50 4851649 RAD50 Pichia stipitis CBS 6054 DNA repair protein XP_001386802.1 2449962 D 322104 CDS PICST_53318 126275154 4851650 complement(<2453982..>2454635) 1 NC_009068.1 predicted protein >2454635 4851650 PICST_53318 Pichia stipitis CBS 6054 predicted protein XP_001387043.1 <2453982 R 322104 CDS PICST_86797 126275158 4851651 2455340..2457856 1 NC_009068.1 predicted protein 2457856 4851651 PICST_86797 Pichia stipitis CBS 6054 predicted protein XP_001386803.1 2455340 D 322104 CDS PICST_6645 126275161 4851652 <2458227..>2459201 1 NC_009068.1 predicted protein >2459201 4851652 PICST_6645 Pichia stipitis CBS 6054 predicted protein XP_001386804.1 <2458227 D 322104 CDS PICST_75521 126275164 4851653 complement(2459487..2460101) 1 NC_009068.1 predicted protein 2460101 4851653 PICST_75521 Pichia stipitis CBS 6054 predicted protein XP_001387044.1 2459487 R 322104 CDS PICST_28914 126275167 4851654 2462524..2463804 1 NC_009068.1 go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; go_process: metabolism; formamidase 2463804 FRM1 4851654 FRM1 Pichia stipitis CBS 6054 formamidase XP_001386805.1 2462524 D 322104 CDS PICST_53191 126275171 4851655 complement(2463938..2465074) 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; predicted protein 2465074 4851655 PICST_53191 Pichia stipitis CBS 6054 predicted protein XP_001387045.1 2463938 R 322104 CDS PICST_53063 126275175 4851656 2466183..2468876 1 NC_009068.1 go_component: COPII vesicle coat; go_function: protein binding; go_process: intracellular protein transport; predicted protein 2468876 4851656 PICST_53063 Pichia stipitis CBS 6054 predicted protein XP_001386806.1 2466183 D 322104 CDS PICST_28917 126275179 4851657 complement(2468916..2469857) 1 NC_009068.1 predicted protein 2469857 4851657 PICST_28917 Pichia stipitis CBS 6054 predicted protein XP_001387046.1 2468916 R 322104 CDS PICST_39840 126275182 4851658 2471207..2472580 1 NC_009068.1 go_process: signal transduction; predicted protein 2472580 4851658 PICST_39840 Pichia stipitis CBS 6054 predicted protein XP_001386807.1 2471207 D 322104 CDS PICST_69783 126275185 4851659 2473195..2473692 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2473692 4851659 PICST_69783 Pichia stipitis CBS 6054 predicted protein XP_001386808.1 2473195 D 322104 CDS PICST_34529 126275188 4851660 join(2474939..2474954,2475085..2476253) 1 NC_009068.1 go_function: acyl-CoA binding; predicted protein 2476253 4851660 PICST_34529 Pichia stipitis CBS 6054 predicted protein XP_001386809.1 2474939 D 322104 CDS PICST_69662 126275191 4851661 2476580..2478811 1 NC_009068.1 predicted protein 2478811 4851661 PICST_69662 Pichia stipitis CBS 6054 predicted protein XP_001386810.1 2476580 D 322104 CDS PICST_39360 126275193 4851662 complement(2478983..2480185) 1 NC_009068.1 predicted protein 2480185 4851662 PICST_39360 Pichia stipitis CBS 6054 predicted protein XP_001387047.1 2478983 R 322104 CDS PICST_80971 126275196 4851663 complement(2481122..2482255) 1 NC_009068.1 predicted protein 2482255 4851663 PICST_80971 Pichia stipitis CBS 6054 predicted protein XP_001387048.1 2481122 R 322104 CDS PICST_39795 126275199 4851664 join(2484017..2485372,2485643..2487550) 1 NC_009068.1 go_component: nucleus; go_process: mitotic cell cycle; mitotic chromosome condensation; predicted protein 2487550 4851664 PICST_39795 Pichia stipitis CBS 6054 predicted protein XP_001386811.1 2484017 D 322104 CDS PICST_66589 126275202 4851665 complement(join(2487797..2488305,2488345..2488349,2488413..2489377)) 1 NC_009068.1 go_component: nucleus; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; transcriptional activator involved in oxidative stress response 2489377 CAP1 4851665 CAP1 Pichia stipitis CBS 6054 transcriptional activator involved in oxidative stress response XP_001387049.1 2487797 R 322104 CDS PICST_28926 126275204 4851666 join(2492616..2492628,2492766..2495146) 1 NC_009068.1 NatC N(alpha)-terminal acetyltransferase, glucose-repressible protein; glucose-repressible protein 2495146 MAK10 4851666 MAK10 Pichia stipitis CBS 6054 glucose-repressible protein XP_001386812.1 2492616 D 322104 CDS PICST_53135 126275206 4851667 join(2495908..2496317,2496333..2497221) 1 NC_009068.1 predicted protein 2497221 4851667 PICST_53135 Pichia stipitis CBS 6054 predicted protein XP_001386813.1 2495908 D 322104 CDS PICST_39453 126275209 4851668 2497845..2498966 1 NC_009068.1 predicted protein 2498966 4851668 PICST_39453 Pichia stipitis CBS 6054 predicted protein XP_001386814.1 2497845 D 322104 CDS PICST_53659 126275211 4851669 2499579..>2499986 1 NC_009068.1 predicted protein >2499986 4851669 PICST_53659 Pichia stipitis CBS 6054 predicted protein XP_001386815.1 2499579 D 322104 CDS PICST_9318 126275214 4851670 complement(<2500694..>2501077) 1 NC_009068.1 go_function: DNA binding; predicted protein >2501077 4851670 PICST_9318 Pichia stipitis CBS 6054 predicted protein XP_001387050.1 <2500694 R 322104 CDS PICST_39691 126275217 4851671 complement(join(2501720..2501898,2502010..2502528,2502625..2503246,2503346..2503672,2503790..2503909)) 1 NC_009068.1 Nitrogen permease regulator 2 2503909 NPR2 4851671 NPR2 Pichia stipitis CBS 6054 Nitrogen permease regulator 2 XP_001387051.1 2501720 R 322104 CDS PICST_40058 126275220 4851672 2504577..2505173 1 NC_009068.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 2505173 4851672 PICST_40058 Pichia stipitis CBS 6054 predicted protein XP_001386816.1 2504577 D 322104 CDS PICST_53344 126275223 4851673 complement(join(2505683..2505925,2506118..2507053)) 1 NC_009068.1 go_function: nucleic acid binding; predicted protein 2507053 4851673 PICST_53344 Pichia stipitis CBS 6054 predicted protein XP_001387052.1 2505683 R 322104 CDS PICST_53410 126275226 4851674 complement(2507481..2508179) 1 NC_009068.1 predicted protein 2508179 4851674 PICST_53410 Pichia stipitis CBS 6054 predicted protein XP_001387053.1 2507481 R 322104 CDS PICST_34540 126275229 4851675 2508407..2508640 1 NC_009068.1 predicted protein 2508640 4851675 PICST_34540 Pichia stipitis CBS 6054 predicted protein XP_001386817.1 2508407 D 322104 CDS PICST_53682 126275232 4851676 complement(2508970..2511114) 1 NC_009068.1 go_component: intracellular; go_process: RNA processing; predicted protein 2511114 4851676 PICST_53682 Pichia stipitis CBS 6054 predicted protein XP_001387054.1 2508970 R 322104 CDS PICST_34542 126275234 4851677 complement(2512007..2513533) 1 NC_009068.1 allantoate permease 2513533 DAL6 4851677 DAL6 Pichia stipitis CBS 6054 allantoate permease XP_001387055.1 2512007 R 322104 CDS PICST_86944 126275236 4851678 2515860..2519828 1 NC_009068.1 go_function: hydrolase activity; catalytic activity; 5-oxoprolinase 2519828 HYU1.3 4851678 HYU1.3 Pichia stipitis CBS 6054 5-oxoprolinase XP_001386818.1 2515860 D 322104 CDS PICST_81272 126275238 4851679 complement(2520512..2520793) 1 NC_009068.1 predicted protein 2520793 4851679 PICST_81272 Pichia stipitis CBS 6054 predicted protein XP_001387056.1 2520512 R 322104 CDS PICST_81097 126275242 4851680 complement(join(2521193..2522240,2522271..2524027)) 1 NC_009068.1 predicted protein 2524027 4851680 PICST_81097 Pichia stipitis CBS 6054 predicted protein XP_001387057.1 2521193 R 322104 CDS PICST_81178 126275244 4851681 complement(2524486..2529027) 1 NC_009068.1 ATPase activity, coupled to transmembrane movement, phosphorylative mechanism, aminophospholipid translocase; aminophospholipid translocase and ATPase 2529027 DNF2 4851681 DNF2 Pichia stipitis CBS 6054 aminophospholipid translocase and ATPase XP_001387058.1 2524486 R 322104 CDS PICST_69583 126275246 4851682 2532612..2533142 1 NC_009068.1 GAL4 enhancer protein homolog of human alpha NAC subunit of the nascent-polypeptide-associated complex alpha subunit EGD2 (NAC-alpha) (Alpha-NAC) (GAL4 DNA-binding enhancer protein 2) with sequence similarity to human alpha NAC subunit of the nascent-polypeptide-associated complex; GAL4 enhancer protein 2533142 EGD2 4851682 EGD2 Pichia stipitis CBS 6054 GAL4 enhancer protein XP_001386819.1 2532612 D 322104 CDS PICST_28943 126275249 4851683 complement(join(2533282..2534201,2534259..2534490)) 1 NC_009068.1 predicted protein 2534490 4851683 PICST_28943 Pichia stipitis CBS 6054 predicted protein XP_001387059.1 2533282 R 322104 CDS PICST_53074 126275252 4851684 2535102..2536058 1 NC_009068.1 predicted protein 2536058 4851684 PICST_53074 Pichia stipitis CBS 6054 predicted protein XP_001386820.1 2535102 D 322104 CDS PICST_34547 126275256 4851685 join(2537142..2539248,2539414..2539688) 1 NC_009068.1 go_function: DNA binding; transcription factor activity; go_process: regulation of transcription, DNA-dependent; predicted protein 2539688 4851685 PICST_34547 Pichia stipitis CBS 6054 predicted protein XP_001386821.1 2537142 D 322104 CDS PICST_75433 126275259 4851686 join(2540993..2542036,2542061..2542963) 1 NC_009068.1 predicted protein 2542963 4851686 PICST_75433 Pichia stipitis CBS 6054 predicted protein XP_001386822.1 2540993 D 322104 CDS PICST_53777 126275262 4851687 2544004..2545983 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; Putative transporter C530 2545983 MDR111 4851687 MDR111 Pichia stipitis CBS 6054 Putative transporter C530 XP_001386823.1 2544004 D 322104 CDS PICST_28948 126275265 4851688 join(2546499..2547053,2547199..2547246) 1 NC_009068.1 predicted protein 2547246 4851688 PICST_28948 Pichia stipitis CBS 6054 predicted protein XP_001386824.1 2546499 D 322104 CDS PICST_28949 126275269 4851689 join(2549061..2549089,2549283..2549521,2549575..2549700,2549728..2550344,2550365..2550656,2550681..2550733) 1 NC_009068.1 Glutamyl-tRNA(Gln) amidotransferase subunit A (amidase) (bacterial) (AMID1); go_function: amidase activity; Glutamyl-tRNA(Gln) amidotransferase subunit A (amidase) 2550733 AMI2 4851689 AMI2 Pichia stipitis CBS 6054 Glutamyl-tRNA(Gln) amidotransferase subunit A (amidase) XP_001386825.1 2549061 D 322104 CDS PICST_28950 126275274 4851690 join(2551938..2557223,2557620..2557859,2558059..2558099,2558271..2558278,2558454..2558815) 1 NC_009068.1 not chitinase - unknown function; Mucin-like not chitinase - possible cell wall mannoprotein 2558815 MUC1.6 4851690 MUC1.6 Pichia stipitis CBS 6054 Mucin-like not chitinase - possible cell wall mannoprotein XP_001386826.1 2551938 D 322104 CDS PICST_66598 126275277 4851691 2560313..2561986 1 NC_009068.1 go_function: disulfide oxidoreductase activity; go_process: electron transport; NADH dehydrogenase 2561986 NDE1 4851691 NDE1 Pichia stipitis CBS 6054 NADH dehydrogenase XP_001386827.1 2560313 D 322104 CDS PICST_28952 126275280 4851692 2562897..2564345 1 NC_009068.1 predicted protein 2564345 4851692 PICST_28952 Pichia stipitis CBS 6054 predicted protein XP_001386828.1 2562897 D 322104 CDS PICST_28953 126275284 4851693 join(2564551..2564657,2564778..2565543) 1 NC_009068.1 predicted protein 2565543 4851693 PICST_28953 Pichia stipitis CBS 6054 predicted protein XP_001386829.1 2564551 D 322104 CDS PICST_28954 126275288 4851694 complement(2565585..2567237) 1 NC_009068.1 go_component: membrane; go_process: transport; very low affinity methionine permease 2567237 MUP3 4851694 MUP3 Pichia stipitis CBS 6054 very low affinity methionine permease XP_001387060.1 2565585 R 322104 CDS PICST_69625 126275291 4851695 complement(2567825..2572735) 1 NC_009068.1 go_component: membrane; integral to membrane; go_function: ATP binding; go_process: transport; predicted protein 2572735 4851695 PICST_69625 Pichia stipitis CBS 6054 predicted protein XP_001387061.1 2567825 R 322104 CDS PICST_86991 126275295 4851696 complement(join(2574534..2575294,2575778..2575781)) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S large subunit ribosomal protein L2B 2575781 RPL2B 4851696 RPL2B Pichia stipitis CBS 6054 60S large subunit ribosomal protein L2B XP_001387062.1 2574534 R 322104 CDS PICST_39616 126275298 4851697 complement(join(<2576435..2577116,2577559..2577683)) 1 NC_009068.1 predicted protein 2577683 4851697 PICST_39616 Pichia stipitis CBS 6054 predicted protein XP_001387063.1 <2576435 R 322104 CDS PICST_75355 126275301 4851698 complement(join(2579036..2579359,2579998..2580054)) 1 NC_009068.1 go_component: ubiquinol-cytochrome-c reductase complex (sensu Eukaryota); go_function: ubiquinol-cytochrome-c reductase activity; go_process: mitochondrial electron transport, ubiquinol to cytochrome c; ubiquinol-cytochrome c oxidoreductase subunit 6 2580054 QCR6 4851698 QCR6 Pichia stipitis CBS 6054 ubiquinol-cytochrome c oxidoreductase subunit 6 XP_001387064.1 2579036 R 322104 CDS PICST_86627 126275303 4851699 complement(2580727..2581512) 1 NC_009068.1 go_component: ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; ribosomal protein L8B (L4B) (rp6) (YL5) 2581512 RPL8B 4851699 RPL8B Pichia stipitis CBS 6054 ribosomal protein L8B (L4B) (rp6) (YL5) XP_001387065.1 2580727 R 322104 CDS PICST_66604 126275306 4851700 complement(2582822..2584522) 1 NC_009068.1 conserved hypothetical protein; serine-rich; conserved hypothetical protein serine-rich 2584522 4851700 PICST_66604 Pichia stipitis CBS 6054 conserved hypothetical protein serine-rich XP_001387066.1 2582822 R 322104 CDS PICST_39517 126275308 4851701 complement(<2586586..>2587836) 1 NC_009068.1 high affinity sugar transporter; go_component: integral to membrane; go_function: transporter activity; go_process: transport; xylose transporter, high affinity, putative similarity to STL13 >2587836 XUT7 4851701 XUT7 Pichia stipitis CBS 6054 xylose transporter, high affinity, putative similarity to STL13 XP_001387067.1 <2586586 R 322104 CDS PICST_80911 126275313 4851702 complement(2589494..2590546) 1 NC_009068.1 go_component: integral to membrane; predicted protein 2590546 4851702 PICST_80911 Pichia stipitis CBS 6054 predicted protein XP_001387068.1 2589494 R 322104 CDS PICST_53894 126275318 4851703 complement(join(<2591692..2594067,2594083..2594118)) 1 NC_009068.1 go_function: nucleic acid binding; predicted protein 2594118 4851703 PICST_53894 Pichia stipitis CBS 6054 predicted protein XP_001387069.1 <2591692 R 322104 CDS PICST_39580 126275321 4851704 complement(2595600..2596730) 1 NC_009068.1 predicted protein 2596730 4851704 PICST_39580 Pichia stipitis CBS 6054 predicted protein XP_001387070.1 2595600 R 322104 CDS PICST_28965 126275324 4851705 complement(2597350..2599023) 1 NC_009068.1 choline kinase 2599023 CKT1 4851705 CKT1 Pichia stipitis CBS 6054 choline kinase XP_001387071.1 2597350 R 322104 CDS PICST_64999 126275328 4851706 join(2604817..2604822,2605237..2605537,2605610..2608407) 1 NC_009068.1 hypothetical protein 2608407 4851706 PICST_64999 Pichia stipitis CBS 6054 hypothetical protein XP_001386830.1 2604817 D 322104 CDS PICST_28968 126275329 4851707 complement(2608605..2609513) 1 NC_009068.1 predicted protein 2609513 4851707 PICST_28968 Pichia stipitis CBS 6054 predicted protein XP_001387072.1 2608605 R 322104 CDS PICST_81274 126275332 4851708 complement(join(2610176..2610716,2610843..2611606)) 1 NC_009068.1 Inhibits nuclear protein localization when present in multiple copies; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; split zinc finger protein 2611606 SFP1 4851708 SFP1 Pichia stipitis CBS 6054 split zinc finger protein XP_001387073.1 2610176 R 322104 CDS PICST_28970 126275335 4851709 2614243..2616144 1 NC_009068.1 predicted protein 2616144 4851709 PICST_28970 Pichia stipitis CBS 6054 predicted protein XP_001386831.1 2614243 D 322104 CDS PICST_28971 126275338 4851710 2616642..2618609 1 NC_009068.1 predicted protein 2618609 4851710 PICST_28971 Pichia stipitis CBS 6054 predicted protein XP_001386832.1 2616642 D 322104 CDS PICST_28972 126275361 4851711 2619367..2620995 1 NC_009068.1 predicted protein 2620995 4851711 PICST_28972 Pichia stipitis CBS 6054 predicted protein XP_001386833.1 2619367 D 322104 CDS PICST_80966 126275364 4851712 2622216..2627858 1 NC_009068.1 go_function: catalytic activity; magnesium ion binding; phosphopantetheinyltransferase activity; go_process: fatty acid biosynthesis; Fatty acid synthase subunit alpha Includes: Acyl carrier 3-oxoacyl-[acyl-carrier-protein] reductase (Beta-ketoacyl reductase) 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl synthase) 2627858 FAS2 4851712 FAS2 Pichia stipitis CBS 6054 Fatty acid synthase subunit alpha Includes: Acyl carrier 3-oxoacyl-[acyl-carrier-protein] reductase (Beta-ketoacyl reductase) 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl synthase) XP_001386834.1 2622216 D 322104 CDS PICST_28974 126275366 4851713 2628388..2634180 1 NC_009068.1 guanine nucleotide exchange protein for ADP-robosylation factor 2634180 SEC7 4851713 SEC7 Pichia stipitis CBS 6054 guanine nucleotide exchange protein for ADP-robosylation factor XP_001386835.1 2628388 D 322104 CDS PICST_28975 126275370 4851714 join(2634803..2634826,2635281..2635334,2635669..2636499) 1 NC_009068.1 predicted protein 2636499 4851714 PICST_28975 Pichia stipitis CBS 6054 predicted protein XP_001386836.1 2634803 D 322104 CDS PICST_53923 126275372 4851715 2637073..2638743 1 NC_009068.1 predicted protein 2638743 4851715 PICST_53923 Pichia stipitis CBS 6054 predicted protein XP_001386837.1 2637073 D 322104 CDS PICST_40135 126275374 4851716 complement(2638823..2640295) 1 NC_009068.1 predicted protein 2640295 4851716 PICST_40135 Pichia stipitis CBS 6054 predicted protein XP_001387074.1 2638823 R 322104 CDS PICST_53869 126275378 4851717 2640984..2642042 1 NC_009068.1 predicted protein 2642042 4851717 PICST_53869 Pichia stipitis CBS 6054 predicted protein XP_001386838.1 2640984 D 322104 CDS PICST_28979 126275381 4851718 join(2642584..2642767,2642808..2642811,2643501..2643658,2643686..2643841,2643983..2645343) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 2645343 4851718 PICST_28979 Pichia stipitis CBS 6054 predicted protein XP_001386839.1 2642584 D 322104 CDS PICST_81113 126275384 4851719 2645900..2651899 1 NC_009068.1 Helicase SEN1 (tRNA-splicing endonuclease positive effector); DEAD-box type RNA helicase 2651899 SEN1 4851719 SEN1 Pichia stipitis CBS 6054 DEAD-box type RNA helicase XP_001386840.1 2645900 D 322104 CDS PICST_34564 126275387 4851720 2655678..2657528 1 NC_009068.1 DNA topoisomerase III; go_function: DNA binding; DNA topoisomerase type I activity; nucleic acid binding; go_process: DNA topological change; DNA unwinding; DNA modification; DNA topoisomerase 2657528 TOP3 4851720 TOP3 Pichia stipitis CBS 6054 DNA topoisomerase XP_001386841.1 2655678 D 322104 CDS PICST_66612 126275391 4851721 2658276..2659625 1 NC_009068.1 predicted protein 2659625 4851721 PICST_66612 Pichia stipitis CBS 6054 predicted protein XP_001386842.1 2658276 D 322104 CDS PICST_39608 126275394 4851722 2659823..2660758 1 NC_009068.1 predicted protein 2660758 4851722 PICST_39608 Pichia stipitis CBS 6054 predicted protein XP_001386843.1 2659823 D 322104 CDS PICST_53781 126275397 4851723 complement(2660843..2663479) 1 NC_009068.1 go_component: membrane; predicted protein 2663479 4851723 PICST_53781 Pichia stipitis CBS 6054 predicted protein XP_001387075.1 2660843 R 322104 CDS PICST_66613 126275400 4851724 complement(2663958..2665415) 1 NC_009068.1 predicted protein 2665415 4851724 PICST_66613 Pichia stipitis CBS 6054 predicted protein XP_001387076.1 2663958 R 322104 CDS PICST_66614 126275403 4851725 2668361..2669386 1 NC_009068.1 predicted protein 2669386 4851725 PICST_66614 Pichia stipitis CBS 6054 predicted protein XP_001386844.1 2668361 D 322104 CDS PICST_86762 126275406 4851726 complement(2669724..2670056) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: translational elongation; predicted protein 2670056 4851726 PICST_86762 Pichia stipitis CBS 6054 predicted protein XP_001387077.1 2669724 R 322104 CDS PICST_66616 126275409 4851727 join(2670646..2670658,2671214..2671629) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2671629 4851727 PICST_66616 Pichia stipitis CBS 6054 predicted protein XP_001386845.1 2670646 D 322104 CDS PICST_39433 126275410 4851728 2672482..2673348 1 NC_009068.1 go_component: membrane; go_function: binding; go_process: transport; Mitochondrial ornithine carrier protein 2673348 ORT1 4851728 ORT1 Pichia stipitis CBS 6054 Mitochondrial ornithine carrier protein XP_001386846.1 2672482 D 322104 CDS PICST_80898 126275413 4851729 complement(join(2673411..2674429,2674457..2674484)) 1 NC_009068.1 predicted protein 2674484 4851729 PICST_80898 Pichia stipitis CBS 6054 predicted protein XP_001387078.1 2673411 R 322104 CDS PICST_66618 126275416 4851730 complement(2675931..2679242) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 2679242 4851730 PICST_66618 Pichia stipitis CBS 6054 predicted protein XP_001387079.1 2675931 R 322104 CDS PICST_28993 126275418 4851731 complement(2681628..2682632) 1 NC_009068.1 go_component: membrane; go_function: binding; go_process: transport; Peroxisomal membrane protein PMP47 2682632 PMP47 4851731 PMP47 Pichia stipitis CBS 6054 Peroxisomal membrane protein PMP47 XP_001387080.1 2681628 R 322104 CDS PICST_28994 126275421 4851732 2683569..2683949 1 NC_009068.1 predicted protein 2683949 4851732 PICST_28994 Pichia stipitis CBS 6054 predicted protein XP_001386847.1 2683569 D 322104 CDS PICST_34572 126275423 4851733 complement(2684282..2686189) 1 NC_009068.1 predicted protein 2686189 4851733 PICST_34572 Pichia stipitis CBS 6054 predicted protein XP_001387081.1 2684282 R 322104 CDS PICST_81261 126275425 4851734 complement(join(2687468..2687599,2687627..2687902,2688678..2688926)) 1 NC_009068.1 predicted protein 2688926 4851734 PICST_81261 Pichia stipitis CBS 6054 predicted protein XP_001387082.1 2687468 R 322104 CDS PICST_66620 126275426 4851735 2692242..2694176 1 NC_009068.1 go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zinc finger protein involved in pre-tRNA splicing 2694176 STP3 4851735 STP3 Pichia stipitis CBS 6054 zinc finger protein involved in pre-tRNA splicing XP_001386848.1 2692242 D 322104 CDS PICST_53878 126275427 4851736 join(<2696917..2697244,2697272..2697706,2697761..2698443) 1 NC_009068.1 predicted protein 2698443 4851736 PICST_53878 Pichia stipitis CBS 6054 predicted protein XP_001386849.1 <2696917 D 322104 CDS PICST_86681 126275430 4851737 complement(join(2698947..2699514,2699970..2699971)) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2699971 4851737 PICST_86681 Pichia stipitis CBS 6054 predicted protein XP_001387083.1 2698947 R 322104 CDS PICST_81265 126275434 4851738 complement(2701073..2702776) 1 NC_009068.1 go_component: phosphoribosylaminoimidazole carboxylase complex; go_function: phosphoribosylaminoimidazole carboxylase activity; go_process: 'de novo' IMP biosynthesis; Phosphoribosylamidoimidazole-succinocarboxamide synthase 2702776 ADE2 4851738 ADE2 Pichia stipitis CBS 6054 Phosphoribosylamidoimidazole-succinocarboxamide synthase XP_001387084.1 2701073 R 322104 CDS PICST_11262 126275438 4851739 complement(join(<2703910..2705060,2705121..>2705475)) 1 NC_009068.1 predicted protein 2705060 4851739 PICST_11262 Pichia stipitis CBS 6054 predicted protein XP_001387085.1 <2703910 R 322104 CDS PICST_29003 126275441 4851740 complement(2709410..2711905) 1 NC_009068.1 go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 2711905 4851740 PICST_29003 Pichia stipitis CBS 6054 predicted protein XP_001387086.1 2709410 R 322104 CDS PICST_53517 126275445 4851741 complement(join(<2712457..2712741,2712757..>2713557)) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 2712741 4851741 PICST_53517 Pichia stipitis CBS 6054 predicted protein XP_001387087.1 <2712457 R 322104 CDS PICST_80919 126275448 4851742 join(2714172..2714792,2714820..2717027,2717073..2717276,2717289..2717438) 1 NC_009068.1 predicted protein 2717438 4851742 PICST_80919 Pichia stipitis CBS 6054 predicted protein XP_001386850.1 2714172 D 322104 CDS PICST_29006 126275454 4851743 2718914..2719756 1 NC_009068.1 go_function: GTP binding; go_process: small GTPase mediated signal transduction; predicted protein 2719756 4851743 PICST_29006 Pichia stipitis CBS 6054 predicted protein XP_001386851.1 2718914 D 322104 CDS PICST_81215 126275466 4851744 complement(join(2720004..2721100,2721146..2723291)) 1 NC_009068.1 go_component: intracellular; go_function: protein kinase activity; ATP binding; protein serine/threonine kinase activity; go_process: protein amino acid phosphorylation; intracellular signaling cascade; signal transduction; predicted protein 2723291 4851744 PICST_81215 Pichia stipitis CBS 6054 predicted protein XP_001387088.1 2720004 R 322104 CDS PICST_81171 126275470 4851745 complement(join(2724606..2726338,2726354..2726366,2726397..2727644)) 1 NC_009068.1 predicted protein 2727644 4851745 PICST_81171 Pichia stipitis CBS 6054 predicted protein XP_001387089.1 2724606 R 322104 CDS PICST_65010 126275473 4851746 2729694..2730566 1 NC_009068.1 Youth, involved in determining longevity 2730566 UTH1 4851746 UTH1 Pichia stipitis CBS 6054 Youth, involved in determining longevity XP_001386852.1 2729694 D 322104 CDS PICST_19384 126275476 4851747 join(2731372..2732101,2732247..2732265,2732277..>2732706) 1 NC_009068.1 predicted protein 2732265 4851747 PICST_19384 Pichia stipitis CBS 6054 predicted protein XP_001386853.1 2731372 D 322104 CDS PICST_39828 126275479 4851748 complement(2732959..2733435) 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (Rieske iron-sulfur protein) (RISP) 2733435 UCRI 4851748 UCRI Pichia stipitis CBS 6054 Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (Rieske iron-sulfur protein) (RISP) XP_001387090.1 2732959 R 322104 CDS PICST_66630 126275482 4851749 complement(2734760..2737612) 1 NC_009068.1 go_component: intracellular; go_function: ubiquitin-protein ligase activity; go_process: protein modification; ubiquitin cycle; predicted protein 2737612 4851749 PICST_66630 Pichia stipitis CBS 6054 predicted protein XP_001387091.1 2734760 R 322104 CDS PICST_66631 126275485 4851750 2738619..2741957 1 NC_009068.1 predicted protein 2741957 4851750 PICST_66631 Pichia stipitis CBS 6054 predicted protein XP_001386854.1 2738619 D 322104 CDS PICST_34582 126275489 4851751 2742566..2744854 1 NC_009068.1 Protein in nuclear pore complex may function in nuclear envelope integrity may also be involved in tRNA biogenesis 2744854 NUP85 4851751 NUP85 Pichia stipitis CBS 6054 Protein in nuclear pore complex may function in nuclear envelope integrity may also be involved in tRNA biogenesis XP_001386855.1 2742566 D 322104 CDS PICST_69588 126275492 4851752 complement(join(2745341..2745809,2746454..2746467)) 1 NC_009068.1 go_component: membrane; proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar ATPase V0 domain subunit c 2746467 CUP5 4851752 CUP5 Pichia stipitis CBS 6054 vacuolar ATPase V0 domain subunit c XP_001387092.1 2745341 R 322104 CDS PICST_53138 126275495 4851753 2747173..2747553 1 NC_009068.1 go_component: ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2747553 4851753 PICST_53138 Pichia stipitis CBS 6054 predicted protein XP_001386856.1 2747173 D 322104 CDS PICST_53208 126275500 4851754 2748112..2751543 1 NC_009068.1 predicted protein 2751543 4851754 PICST_53208 Pichia stipitis CBS 6054 predicted protein XP_001386857.1 2748112 D 322104 CDS PICST_53364 126275502 4851755 complement(2751593..2753887) 1 NC_009068.1 go_component: membrane; go_function: voltage-gated chloride channel activity; go_process: chloride transport; voltage-gated chloride channel 2753887 GEF1 4851755 GEF1 Pichia stipitis CBS 6054 voltage-gated chloride channel XP_001387093.1 2751593 R 322104 CDS PICST_29020 126275505 4851756 complement(2754175..2755644) 1 NC_009068.1 predicted protein 2755644 4851756 PICST_29020 Pichia stipitis CBS 6054 predicted protein XP_001387094.1 2754175 R 322104 CDS PICST_29021 126275509 4851757 2756472..2756978 1 NC_009068.1 predicted protein 2756978 4851757 PICST_29021 Pichia stipitis CBS 6054 predicted protein XP_001386858.1 2756472 D 322104 CDS PICST_53649 126275511 4851758 complement(2757313..2758239) 1 NC_009068.1 predicted protein 2758239 4851758 PICST_53649 Pichia stipitis CBS 6054 predicted protein XP_001387095.1 2757313 R 322104 CDS PICST_29023 126275517 4851759 2758916..2759812 1 NC_009068.1 predicted protein 2759812 4851759 PICST_29023 Pichia stipitis CBS 6054 predicted protein XP_001386859.1 2758916 D 322104 CDS PICST_86981 126275520 4851760 2760317..2764708 1 NC_009068.1 go_function: nucleotide binding; DNA binding; DNA-directed DNA polymerase activity; 3'-5' exonuclease activity; go_process: DNA replication; DNA-directed DNA polymerase alpha Required for mitotic DNA synthesis, premeiotic DNA synthesis, recombination, and full sporulation 2764708 POL1 4851760 POL1 Pichia stipitis CBS 6054 DNA-directed DNA polymerase alpha Required for mitotic DNA synthesis, premeiotic DNA synthesis, recombination, and full sporulation XP_001386860.1 2760317 D 322104 CDS PICST_53150 126275522 4851761 <2766014..2767399 1 NC_009068.1 go_component: nuclear chromosome; go_process: chromatin remodeling; predicted protein 2767399 4851761 PICST_53150 Pichia stipitis CBS 6054 predicted protein XP_001386861.1 <2766014 D 322104 CDS PICST_29026 126275525 4851762 join(2768878..2768901,2769007..2769351) 1 NC_009068.1 predicted protein 2769351 4851762 PICST_29026 Pichia stipitis CBS 6054 predicted protein XP_001386862.1 2768878 D 322104 CDS PICST_34588 126275528 4851763 2770249..2771373 1 NC_009068.1 NADP/NADPH-linked alcohol dehydrogenase, class V; go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; NADP-dependent alcohol dehydrogenase 2771373 ADH6 4851763 ADH6 Pichia stipitis CBS 6054 NADP-dependent alcohol dehydrogenase XP_001386863.1 2770249 D 322104 CDS PICST_53846 126275531 4851764 2771785..2772660 1 NC_009068.1 go_function: oxidoreductase activity; go_process: metabolism; 1-Acyl dihydroxyacetone phosphate reductase ribitol 2-dehydrogenase 2772660 AYR3 4851764 AYR3 Pichia stipitis CBS 6054 1-Acyl dihydroxyacetone phosphate reductase ribitol 2-dehydrogenase XP_001386864.1 2771785 D 322104 CDS PICST_66635 126275534 4851765 2773285..2775366 1 NC_009068.1 predicted protein 2775366 4851765 PICST_66635 Pichia stipitis CBS 6054 predicted protein XP_001386865.1 2773285 D 322104 CDS PICST_53802 126275537 4851766 2776785..2777759 1 NC_009068.1 predicted protein 2777759 4851766 PICST_53802 Pichia stipitis CBS 6054 predicted protein XP_001386866.1 2776785 D 322104 CDS PICST_29031 126275540 4851767 complement(join(2778041..2778910,2779195..2779209)) 1 NC_009068.1 go_component: membrane; go_function: binding; go_process: transport; citrate transport protein 2779209 CTP1 4851767 CTP1 Pichia stipitis CBS 6054 citrate transport protein XP_001387096.1 2778041 R 322104 CDS PICST_86867 126275543 4851768 complement(join(2779588..2779836,2779897..2780823)) 1 NC_009068.1 go_component: transcription factor TFIIE complex; go_function: RNA polymerase II transcription factor activity; go_process: transcription initiation from RNA polymerase II promoter; predicted protein 2780823 4851768 PICST_86867 Pichia stipitis CBS 6054 predicted protein XP_001387097.1 2779588 R 322104 CDS PICST_53324 126275546 4851769 join(<2782291..2782444,2782494..2782501,2782546..2782708,2782757..2783271,2783299..2783709,2783737..2784050,2784069..2784186) 1 NC_009068.1 Forkhead transcription factor HCM1 (High-copy suppressor of calmodulin protein 1); go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; fork head family transcription factor 2784186 HCM1 4851769 HCM1 Pichia stipitis CBS 6054 fork head family transcription factor XP_001386867.1 <2782291 D 322104 CDS PICST_40262 126275549 4851770 complement(2784568..2785047) 1 NC_009068.1 go_component: nucleus; go_function: molecular function unknown; predicted protein 2785047 4851770 PICST_40262 Pichia stipitis CBS 6054 predicted protein XP_001387098.1 2784568 R 322104 CDS PICST_34593 126275552 4851771 2786178..2787020 1 NC_009068.1 go_component: membrane; predicted protein 2787020 4851771 PICST_34593 Pichia stipitis CBS 6054 predicted protein XP_001386868.1 2786178 D 322104 CDS PICST_53825 126275555 4851772 join(<2788478..2788500,2788554..2788617,2788636..2790186) 1 NC_009068.1 predicted protein 2790186 4851772 PICST_53825 Pichia stipitis CBS 6054 predicted protein XP_001386869.1 <2788478 D 322104 CDS PICST_34594 126275559 4851773 2793713..2795461 1 NC_009068.1 part of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functions in protein targeting to the endoplasmic reticulum (ER) membrane; signal recognition particle, subunit SRP68 (SRP68) 2795461 SRP68 4851773 SRP68 Pichia stipitis CBS 6054 signal recognition particle, subunit SRP68 (SRP68) XP_001386870.1 2793713 D 322104 CDS PICST_34595 126275562 4851774 2795847..2796902 1 NC_009068.1 UDP-galactose transporter 2796902 HUT1 4851774 HUT1 Pichia stipitis CBS 6054 UDP-galactose transporter XP_001386871.1 2795847 D 322104 CDS PICST_34596 126275565 4851775 2797120..2798319 1 NC_009068.1 go_function: metal ion binding; predicted protein 2798319 4851775 PICST_34596 Pichia stipitis CBS 6054 predicted protein XP_001386872.1 2797120 D 322104 CDS PICST_39320 126275568 4851776 complement(2798817..2800262) 1 NC_009068.1 Endoglucanase C (EGC) (Endo-1,4-beta-glucanase) (Cellulase C); go_function: hydrolase activity, hydrolyzing O-glycosyl compounds; go_process: carbohydrate metabolism; endoglucanase family 5 glycoside hydrolase 2800262 EGC3 4851776 EGC3 Pichia stipitis CBS 6054 endoglucanase family 5 glycoside hydrolase XP_001387099.1 2798817 R 322104 CDS PICST_29041 126275571 4851777 2801503..2802984 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; hexose transporter (tentative) 2802984 HXT2.1 4851777 HXT2.1 Pichia stipitis CBS 6054 hexose transporter (tentative) XP_001386873.1 2801503 D 322104 CDS PICST_81035 126275574 4851778 join(2803734..2805065,2805258..2805428) 1 NC_009068.1 Transcription modifier required for vegetative repression of early meiosis-specific as well as non-meiotic genes required for mitotic intragenic and intergenic recombination and for sporulation; histone deacetylase transcription modifier 2805428 RPD3 4851778 RPD3 Pichia stipitis CBS 6054 histone deacetylase transcription modifier XP_001386874.1 2803734 D 322104 CDS PICST_53028 126275577 4851779 join(2806150..2806701,2806786..2807248,2807297..2807430) 1 NC_009068.1 go_function: NAD+ kinase activity; go_process: metabolism; protein involved in oxidative stress 2807430 POS5 4851779 POS5 Pichia stipitis CBS 6054 protein involved in oxidative stress XP_001386875.1 2806150 D 322104 CDS PICST_66638 126275579 4851780 2809716..2812163 1 NC_009068.1 General repressor of transcription (with Tup1p) mediates glucose repression (CYC8 ); glucose repression mediator protein 2812163 SSN6 4851780 SSN6 Pichia stipitis CBS 6054 glucose repression mediator protein XP_001386876.1 2809716 D 322104 CDS PICST_69689 126275583 4851781 complement(<2813631..2814194) 1 NC_009068.1 hypothetical protein 2814194 4851781 PICST_69689 Pichia stipitis CBS 6054 hypothetical protein XP_001387100.1 <2813631 R 322104 CDS PICST_53805 126275586 4851782 complement(2815193..2815822) 1 NC_009068.1 predicted protein 2815822 4851782 PICST_53805 Pichia stipitis CBS 6054 predicted protein XP_001387101.1 2815193 R 322104 CDS PICST_29047 126275589 4851783 2817620..2819452 1 NC_009068.1 predicted protein 2819452 4851783 PICST_29047 Pichia stipitis CBS 6054 predicted protein XP_001386877.1 2817620 D 322104 CDS PICST_75518 126275592 4851784 2820042..2820665 1 NC_009068.1 go_function: NADH dehydrogenase (ubiquinone) activity; NADH-ubiquinone oxidoreductase 2820665 NUO20 4851784 NUO20 Pichia stipitis CBS 6054 NADH-ubiquinone oxidoreductase XP_001386878.1 2820042 D 322104 CDS PICST_69601 126275595 4851785 2822016..2822426 1 NC_009068.1 go_function: DNA binding; predicted protein 2822426 4851785 PICST_69601 Pichia stipitis CBS 6054 predicted protein XP_001386879.1 2822016 D 322104 CDS PICST_66642 126275598 4851786 complement(2823437..2825509) 1 NC_009068.1 Negative growth regulatory protein NGR1 (RNA-binding protein RBP1); negative growth regulatory protein 2825509 NGR1 4851786 NGR1 Pichia stipitis CBS 6054 negative growth regulatory protein XP_001387102.1 2823437 R 322104 CDS PICST_81277 126275601 4851787 complement(join(2827129..2827482,2827546..2831356,2831438..2832438,2832655..2832678,2832802..2832963)) 1 NC_009068.1 Phospholipase D1 (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D1); go_function: catalytic activity; go_process: metabolism; phospholipase D 2832963 SPO14 4851787 SPO14 Pichia stipitis CBS 6054 phospholipase D XP_001387103.1 2827129 R 322104 CDS PICST_29052 126275604 4851788 complement(join(2833284..2833427,2833699..2834052)) 1 NC_009068.1 predicted protein 2834052 4851788 PICST_29052 Pichia stipitis CBS 6054 predicted protein XP_001387104.1 2833284 R 322104 CDS PICST_66644 126275607 4851789 complement(join(2834687..2835144,2835302..2835332)) 1 NC_009068.1 predicted protein 2835332 4851789 PICST_66644 Pichia stipitis CBS 6054 predicted protein XP_001387105.1 2834687 R 322104 CDS PICST_39888 126275609 4851790 2835894..2837018 1 NC_009068.1 predicted protein 2837018 4851790 PICST_39888 Pichia stipitis CBS 6054 predicted protein XP_001386880.1 2835894 D 322104 CDS PICST_75322 126275611 4851791 complement(2837290..2837898) 1 NC_009068.1 H/ACA ribonucleoprotein complex subunit 1 (snoRNP protein GAR1); go_component: small nuclear ribonucleoprotein complex; go_function: rRNA binding; go_process: rRNA processing; ribosome biogenesis; H/ACA small nucleolar RNP component GAR1 2837898 GAR1 4851791 GAR1 Pichia stipitis CBS 6054 H/ACA small nucleolar RNP component GAR1 XP_001387106.1 2837290 R 322104 CDS PICST_65016 126275614 4851792 join(2838928..2838943,2839500..>2840635) 1 NC_009068.1 go_function: calcium ion binding; predicted protein 2838943 4851792 PICST_65016 Pichia stipitis CBS 6054 predicted protein XP_001386881.1 2838928 D 322104 CDS PICST_39554 126275617 4851793 complement(2843959..2845119) 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; alpha-ketoglutarate catabolism dioxygenase 2845119 IFH2 4851793 IFH2 Pichia stipitis CBS 6054 alpha-ketoglutarate catabolism dioxygenase XP_001387107.1 2843959 R 322104 CDS PICST_34605 126275620 4851794 complement(2846132..2847289) 1 NC_009068.1 go_function: oxidoreductase activity; go_process: electron transport; Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase-like protein 2847289 TCD4 4851794 TCD4 Pichia stipitis CBS 6054 Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase-like protein XP_001387108.1 2846132 R 322104 CDS PICST_66647 126275624 4851795 complement(2848521..2849291) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 2849291 4851795 PICST_66647 Pichia stipitis CBS 6054 predicted protein XP_001387109.1 2848521 R 322104 CDS PICST_75347 126275627 4851796 2850988..2851410 1 NC_009068.1 predicted protein 2851410 4851796 PICST_75347 Pichia stipitis CBS 6054 predicted protein XP_001386882.1 2850988 D 322104 CDS PICST_69488 126275630 4851797 complement(2852027..2853682) 1 NC_009068.1 go_component: membrane; go_function: L-methionine porter activity; amino acid transporter activity; amino acid-polyamine transporter activity; go_process: transport; amino acid transport; high affinity methionine permease 2853682 MUP1.1 4851797 MUP1.1 Pichia stipitis CBS 6054 high affinity methionine permease XP_001387110.1 2852027 R 322104 CDS PICST_86979 126275633 4851798 complement(join(2855946..2859548,2859591..2859641)) 1 NC_009068.1 may be required during cell division for faithful partitioning of the ER-nuclear envelope membranes, involved in control of mitotic chromsome transmission; go_function: nucleic acid binding; go_function: nucleic acid binding; vigilin 2859641 SCP160 4851798 SCP160 Pichia stipitis CBS 6054 vigilin XP_001387111.1 2855946 R 322104 CDS PICST_53284 126275636 4851799 complement(join(2860585..2860973,2860998..2861065,2861132..2862156)) 1 NC_009068.1 predicted protein 2862156 4851799 PICST_53284 Pichia stipitis CBS 6054 predicted protein XP_001387112.1 2860585 R 322104 CDS PICST_65019 126275639 4851800 complement(2864446..2866665) 1 NC_009068.1 go_function: DNA binding; ATP-dependent DNA helicase activity; go_process: double-strand break repair via nonhomologous end-joining; predicted protein 2866665 4851800 PICST_65019 Pichia stipitis CBS 6054 predicted protein XP_001387113.1 2864446 R 322104 CDS PICST_86644 126275642 4851801 2867188..2867625 1 NC_009068.1 go_component: clathrin vesicle coat; go_process: intracellular protein transport; predicted protein 2867625 4851801 PICST_86644 Pichia stipitis CBS 6054 predicted protein XP_001386883.1 2867188 D 322104 CDS PICST_53211 126275645 4851802 complement(2867712..2868401) 1 NC_009068.1 thymidylate kinase Essential for mitotic DNA synthesis. Required for premeiotic DNA synthesis, synaptonemal complexes, recombination, meiosis I, meiosis II, and spores; go_function: thymidylate kinase activity; ATP binding; go_process: dTDP biosynthesis; dTTP biosynthesis; thymidylate kinase 2868401 CDC8 4851802 CDC8 Pichia stipitis CBS 6054 thymidylate kinase XP_001387114.1 2867712 R 322104 CDS PICST_66654 126275648 4851803 join(2871373..2873040,2873161..2874075) 1 NC_009068.1 predicted protein 2874075 4851803 PICST_66654 Pichia stipitis CBS 6054 predicted protein XP_001386884.1 2871373 D 322104 CDS PICST_66655 126275651 4851804 2874675..2875310 1 NC_009068.1 predicted protein 2875310 4851804 PICST_66655 Pichia stipitis CBS 6054 predicted protein XP_001386885.1 2874675 D 322104 CDS PICST_81023 126275654 4851805 complement(2875581..2877593) 1 NC_009068.1 go_component: membrane; go_function: amino acid-polyamine transporter activity; go_process: amino acid transport; predicted protein 2877593 4851805 PICST_81023 Pichia stipitis CBS 6054 predicted protein XP_001387115.1 2875581 R 322104 CDS PICST_66657 126275657 4851806 complement(2878573..2882283) 1 NC_009068.1 hypothetical protein 2882283 4851806 PICST_66657 Pichia stipitis CBS 6054 hypothetical protein XP_001387116.1 2878573 R 322104 CDS PICST_53084 126275659 4851807 2886043..2887137 1 NC_009068.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; mitochondrial 2-enoyl thioester reductase 2887137 ETR1 4851807 ETR1 Pichia stipitis CBS 6054 mitochondrial 2-enoyl thioester reductase XP_001386886.1 2886043 D 322104 CDS PICST_29072 126275662 4851808 complement(2887425..2889242) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; zinc finger transcription factor 2889242 GLN32 4851808 GLN32 Pichia stipitis CBS 6054 zinc finger transcription factor XP_001387117.1 2887425 R 322104 CDS PICST_53441 126275665 4851809 complement(<2892054..2892806) 1 NC_009068.1 predicted protein 2892806 4851809 PICST_53441 Pichia stipitis CBS 6054 predicted protein XP_001387118.1 <2892054 R 322104 CDS PICST_40180 126275669 4851810 complement(2893445..2895154) 1 NC_009068.1 Glutamate decarboxylase/sphingosine phosphate lyase Glutamate decarboxylase (GAD) (ERT D1); go_function: carboxy-lyase activity; go_process: amino acid metabolism; Glutamate decarboxylase (GAD) (ERT D1) 2895154 DCE1 4851810 DCE1 Pichia stipitis CBS 6054 Glutamate decarboxylase (GAD) (ERT D1) XP_001387119.1 2893445 R 322104 CDS PICST_75534 126275675 4851811 complement(2896687..2897151) 1 NC_009068.1 beta subunit of the nascent-polypeptide-associated complex (NAC); RNA polymerase II general transcription factor BTF3 and related proteins; homologous to human BTF3b GAL4 enhancer protein BTF3 homolog EGD1 (GAL4 DNA-binding enhancer protein 1); nascent-polypeptide-associated complex beta subunit 2897151 EGD1 4851811 EGD1 Pichia stipitis CBS 6054 nascent-polypeptide-associated complex beta subunit XP_001387120.1 2896687 R 322104 CDS PICST_86802 126275678 4851812 2897652..2898497 1 NC_009068.1 vacuolar diacylglycerol pyrophosphate phosphatase 2898497 DGP3 4851812 DGP3 Pichia stipitis CBS 6054 vacuolar diacylglycerol pyrophosphate phosphatase XP_001386887.1 2897652 D 322104 CDS PICST_29077 126275680 4851813 2898996..2900252 1 NC_009068.1 hypothetical protein 2900252 4851813 PICST_29077 Pichia stipitis CBS 6054 hypothetical protein XP_001386888.1 2898996 D 322104 CDS PICST_53693 126275682 4851814 complement(join(<2900613..2901435,2901571..2902213,2902286..2903745,2903785..2903819)) 1 NC_009068.1 predicted protein 2903819 4851814 PICST_53693 Pichia stipitis CBS 6054 predicted protein XP_001387121.1 <2900613 R 322104 CDS PICST_29079 126275685 4851815 complement(2905865..2906989) 1 NC_009068.1 NADP-dependent alcohol dehydrogenase VII; go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; Alcohol dehydrogenase, class V 2906989 ADH4 4851815 ADH4 Pichia stipitis CBS 6054 Alcohol dehydrogenase, class V XP_001387122.1 2905865 R 322104 CDS PICST_39586 126275688 4851816 complement(join(2907678..2908326,2908432..2909051)) 1 NC_009068.1 predicted protein 2909051 4851816 PICST_39586 Pichia stipitis CBS 6054 predicted protein XP_001387123.1 2907678 R 322104 CDS PICST_53561 126275691 4851817 complement(2909385..2909834) 1 NC_009068.1 predicted protein 2909834 4851817 PICST_53561 Pichia stipitis CBS 6054 predicted protein XP_001387124.1 2909385 R 322104 CDS PICST_53898 126275696 4851818 2910648..2911223 1 NC_009068.1 go_function: calcium ion binding; predicted protein 2911223 4851818 PICST_53898 Pichia stipitis CBS 6054 predicted protein XP_001386889.1 2910648 D 322104 CDS PICST_75432 126275699 4851819 complement(2911575..2913710) 1 NC_009068.1 transcription factor involved in cell cycle dependent gene expression 2913710 SWI6 4851819 SWI6 Pichia stipitis CBS 6054 transcription factor involved in cell cycle dependent gene expression XP_001387125.1 2911575 R 322104 CDS PICST_39970 126275701 4851820 join(2914861..2915353,2915411..2915634) 1 NC_009068.1 predicted protein 2915634 4851820 PICST_39970 Pichia stipitis CBS 6054 predicted protein XP_001386890.1 2914861 D 322104 CDS PICST_40011 126275704 4851821 join(2916099..2916316,2916474..2917104) 1 NC_009068.1 FAD synthetase (FMN adenylyltransferase) (FAD pyrophosphorylase) (Flavin adenine dinucleotide synthetase) 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase); go_function: transferase activity; go_process: metabolism; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 2917104 FAD1 4851821 FAD1 Pichia stipitis CBS 6054 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes XP_001386891.1 2916099 D 322104 CDS PICST_40109 126275707 4851822 complement(2917454..>2918314) 1 NC_009068.1 predicted protein >2918314 4851822 PICST_40109 Pichia stipitis CBS 6054 predicted protein XP_001387126.1 2917454 R 322104 CDS PICST_29087 126275710 4851823 complement(2918887..2920362) 1 NC_009068.1 predicted protein 2920362 4851823 PICST_29087 Pichia stipitis CBS 6054 predicted protein XP_001387127.1 2918887 R 322104 CDS PICST_2658 126275712 4851824 complement(join(<2920953..2922133,2922212..>2922305)) 1 NC_009068.1 NAD-dependent histone deacetylase SIR2 (Regulatory protein SIR2) (Silent information regulator 2); go_component: chromatin silencing complex; go_function: DNA binding; go_process: chromatin silencing; regulation of transcription, DNA-dependent; NAD-dependent histone deacetylase 2922133 SIR2 4851824 SIR2 Pichia stipitis CBS 6054 NAD-dependent histone deacetylase XP_001387128.1 <2920953 R 322104 CDS PICST_81203 126275716 4851825 2924123..2925646 1 NC_009068.1 go_function: cyclopropane-fatty-acyl-phospholipid synthase activity; go_process: lipid biosynthesis; predicted protein 2925646 4851825 PICST_81203 Pichia stipitis CBS 6054 predicted protein XP_001386892.1 2924123 D 322104 CDS PICST_53620 126275718 4851826 2927124..2928779 1 NC_009068.1 Malate synthase, glyoxysomal carbon-catabolite sensitive malate synthase in S. cerevisiae; go_function: malate synthase activity; go_process: glyoxylate cycle; tricarboxylic acid cycle; Malate synthase, glyoxysomal (MASY) 2928779 MLS1.1 4851826 MLS1.1 Pichia stipitis CBS 6054 Malate synthase, glyoxysomal (MASY) XP_001386893.1 2927124 D 322104 CDS PICST_53101 126275721 4851827 join(2929973..2930157,2930179..2931634) 1 NC_009068.1 multidrug resistance protein 7 2931634 MDR17 4851827 MDR17 Pichia stipitis CBS 6054 multidrug resistance protein 7 XP_001386894.1 2929973 D 322104 CDS PICST_29092 126275723 4851828 complement(2934096..2936105) 1 NC_009068.1 predicted protein 2936105 4851828 PICST_29092 Pichia stipitis CBS 6054 predicted protein XP_001387129.1 2934096 R 322104 CDS PICST_53851 126275726 4851829 join(2937292..2937927,2937955..2938309,2938343..2938714,2938733..2939188,2939267..2939376) 1 NC_009068.1 predicted protein 2939376 4851829 PICST_53851 Pichia stipitis CBS 6054 predicted protein XP_001386895.1 2937292 D 322104 CDS PICST_69620 126275728 4851830 join(2941786..2945032,2945084..2947209) 1 NC_009068.1 go_function: actin binding; predicted protein 2947209 4851830 PICST_69620 Pichia stipitis CBS 6054 predicted protein XP_001386896.1 2941786 D 322104 CDS PICST_75152 126275730 4851831 complement(<2950868..>2951116) 1 NC_009068.1 predicted protein >2951116 4851831 PICST_75152 Pichia stipitis CBS 6054 predicted protein XP_001387130.1 <2950868 R 322104 CDS PICST_53880 126275733 4851832 join(2951597..2951783,2951846..>2953077) 1 NC_009068.1 go_component: integral to membrane; go_function: transporter activity; go_process: transport; High-affinity glucose transporter 2951783 HGT1 4851832 HGT1 Pichia stipitis CBS 6054 High-affinity glucose transporter XP_001386897.1 2951597 D 322104 CDS PICST_34629 126275736 4851833 2954353..2955054 1 NC_009068.1 predicted protein 2955054 4851833 PICST_34629 Pichia stipitis CBS 6054 predicted protein XP_001386898.1 2954353 D 322104 CDS PICST_24134 126275742 4851834 <2956771..>2960040 1 NC_009068.1 predicted protein >2960040 4851834 PICST_24134 Pichia stipitis CBS 6054 predicted protein XP_001386899.1 <2956771 D 322104 CDS PICST_29099 126275744 4851835 complement(2960287..2961021) 1 NC_009068.1 Microsomal signal peptidase subunit 3; go_component: endoplasmic reticulum; integral to membrane; go_function: signal peptidase activity; signal peptidase subunit 2961021 SPC3 4851835 SPC3 Pichia stipitis CBS 6054 signal peptidase subunit XP_001387131.1 2960287 R 322104 CDS PICST_81289 126275747 4851836 complement(2961697..2964027) 1 NC_009068.1 cysteinyl-tRNA synthetase (CysRS); go_function: cysteine-tRNA ligase activity; ATP binding; go_process: cysteinyl-tRNA aminoacylation; cysteinyl-tRNA synthetase 2964027 CYR1 4851836 CYR1 Pichia stipitis CBS 6054 cysteinyl-tRNA synthetase XP_001387132.1 2961697 R 322104 CDS PICST_69792 126275749 4851837 join(2965055..2965171,2965642..2965926) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; predicted protein 2965926 4851837 PICST_69792 Pichia stipitis CBS 6054 predicted protein XP_001386900.1 2965055 D 322104 CDS PICST_39465 126275751 4851838 complement(2966171..2968408) 1 NC_009068.1 go_function: GTP binding; translation elongation factor activity; go_process: protein biosynthesis; translational elongation; predicted protein 2968408 4851838 PICST_39465 Pichia stipitis CBS 6054 predicted protein XP_001387133.1 2966171 R 322104 CDS PICST_81126 126275753 4851839 complement(2968980..2970287) 1 NC_009068.1 go_function: oxidoreductase activity; predicted protein 2970287 4851839 PICST_81126 Pichia stipitis CBS 6054 predicted protein XP_001387134.1 2968980 R 322104 CDS PICST_66670 126275757 4851840 join(2973408..2973479,2973543..2974670) 1 NC_009068.1 predicted protein 2974670 4851840 PICST_66670 Pichia stipitis CBS 6054 predicted protein XP_001386901.1 2973408 D 322104 CDS PICST_29105 126275759 4851841 complement(2975863..2979471) 1 NC_009068.1 go_function: transferase activity, transferring hexosyl groups; chitin-UDP acetyl-glucosaminyl transferase 3 2979471 CHS3 4851841 CHS3 Pichia stipitis CBS 6054 chitin-UDP acetyl-glucosaminyl transferase 3 XP_001387135.1 2975863 R 322104 CDS PICST_53245 126275762 4851842 complement(join(2980794..2983421,2983461..2985587)) 1 NC_009068.1 predicted protein 2985587 4851842 PICST_53245 Pichia stipitis CBS 6054 predicted protein XP_001387136.1 2980794 R 322104 CDS PICST_29107 126275764 4851843 complement(join(2985971..2987536,2990296,2991712..2991734)) 1 NC_009068.1 go_component: membrane; go_process: transport; histidine permease 2991734 HIP1 4851843 HIP1 Pichia stipitis CBS 6054 histidine permease XP_001387137.1 2985971 R 322104 CDS PICST_39560 126275767 4851844 complement(2991948..2993603) 1 NC_009068.1 Xylose UpTake (tentative) Predicted transporter (major facilitator superfamily) with sequence similarity to similar; go_component: integral to membrane; go_function: transporter activity; go_process: transport; sugar transporter, putative 2993603 XUT3 4851844 XUT3 Pichia stipitis CBS 6054 sugar transporter, putative XP_001387138.1 2991948 R 322104 CDS PICST_39804 126275770 4851845 2994206..2994895 1 NC_009068.1 Predicted panthothenate kinase/uridine kinase-related protein 2994895 YFH7.2 4851845 YFH7.2 Pichia stipitis CBS 6054 Predicted panthothenate kinase/uridine kinase-related protein XP_001386902.1 2994206 D 322104 CDS PICST_81012 126275773 4851846 complement(join(2994955..2998257,2998372..2998707)) 1 NC_009068.1 Required for mismatch repair in mitosis & meiosis, low levels of postmeiotic segregation & high spore viability forms complex with Msh2p to repair both single-base & insertion-deletion mispairs redundant with Msh3p in repair of in-dels; go_function: damaged DNA binding; ATP binding; DNA binding; go_process: mismatch repair; DNA repair; DNA metabolism; Mismatch repair ATPase MSH6 (MutS family) 2998707 MSH6 4851846 MSH6 Pichia stipitis CBS 6054 Mismatch repair ATPase MSH6 (MutS family) XP_001387139.1 2994955 R 322104 CDS PICST_29111 126275776 4851847 2999218..>2999899 1 NC_009068.1 predicted protein >2999899 4851847 PICST_29111 Pichia stipitis CBS 6054 predicted protein XP_001386903.1 2999218 D 322104 CDS PICST_53940 126275779 4851848 complement(3000007..3001392) 1 NC_009068.1 go_function: nucleotidyltransferase activity; go_process: biosynthesis; Probable mannose-1-phosphate guanyltransferase (GTP-mannose-1-phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) 3001392 MPG2 4851848 MPG2 Pichia stipitis CBS 6054 Probable mannose-1-phosphate guanyltransferase (GTP-mannose-1-phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) XP_001387140.1 3000007 R 322104 CDS PICST_5333 126275780 4851849 complement(<3002081..>3003187) 1 NC_009068.1 go_component: intracellular; go_function: exonuclease activity; predicted protein >3003187 4851849 PICST_5333 Pichia stipitis CBS 6054 predicted protein XP_001387141.1 <3002081 R 322104 CDS PICST_26814 126275783 4851850 complement(<3007378..3008133) 1 NC_009068.1 predicted protein 3008133 4851850 PICST_26814 Pichia stipitis CBS 6054 predicted protein XP_001387142.1 <3007378 R 322104 CDS PICST_29116 126275786 4851851 3008922..3010697 1 NC_009068.1 predicted protein 3010697 4851851 PICST_29116 Pichia stipitis CBS 6054 predicted protein XP_001386904.1 3008922 D 322104 CDS PICST_86993 126275790 4851852 join(3013392..3013770,3013924..3014477) 1 NC_009068.1 predicted protein 3014477 4851852 PICST_86993 Pichia stipitis CBS 6054 predicted protein XP_001386905.1 3013392 D 322104 CDS PICST_23499 126275792 4851853 join(<3015399..3015645,3015697..>3015743) 1 NC_009068.1 go_process: protein folding; predicted protein 3015645 4851853 PICST_23499 Pichia stipitis CBS 6054 predicted protein XP_001386906.1 <3015399 D 322104 CDS PICST_81173 126275794 4851854 3016475..3017308 1 NC_009068.1 predicted protein 3017308 4851854 PICST_81173 Pichia stipitis CBS 6054 predicted protein XP_001386907.1 3016475 D 322104 CDS PICST_29120 126275797 4851855 complement(join(<3017411..3018600,3018653..3018740)) 1 NC_009068.1 predicted protein 3018740 4851855 PICST_29120 Pichia stipitis CBS 6054 predicted protein XP_001387143.1 <3017411 R 322104 CDS PICST_39416 126275801 4851856 complement(join(3018926..3020541,3020592..3020721)) 1 NC_009068.1 Quinate permease (Quinate transporter) similarity to GXS1; go_component: integral to membrane; go_function: transporter activity; go_process: transport; Quinate permease (Quinate transporter) 3020721 QUP4 4851856 QUP4 Pichia stipitis CBS 6054 Quinate permease (Quinate transporter) XP_001387144.1 3018926 R 322104 CDS PICST_86847 126275804 4851857 3023043..3023633 1 NC_009068.1 go_component: membrane; proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; vacuolar ATPase V0 domain subunit c 3023633 PPA1 4851857 PPA1 Pichia stipitis CBS 6054 vacuolar ATPase V0 domain subunit c XP_001386908.1 3023043 D 322104 CDS PICST_65037 126275808 4851858 complement(3024002..3026851) 1 NC_009068.1 go_process: regulation of cell cycle; predicted protein 3026851 4851858 PICST_65037 Pichia stipitis CBS 6054 predicted protein XP_001387145.1 3024002 R 322104 CDS PICST_53352 126275811 4851859 join(3028051..3028449,3028471..3029781) 1 NC_009068.1 predicted protein 3029781 4851859 PICST_53352 Pichia stipitis CBS 6054 predicted protein XP_001386909.1 3028051 D 322104 CDS PICST_40259 126275817 4851860 complement(3032004..3032954) 1 NC_009068.1 go_function: catalytic activity; predicted protein 3032954 4851860 PICST_40259 Pichia stipitis CBS 6054 predicted protein XP_001387146.1 3032004 R 322104 CDS PICST_66679 126275820 4851861 3035074..3037068 1 NC_009068.1 similar to CaStp2p involved in pre-tRNA splicing; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; zf-C2H2 Zinc finger, C2H2 type 3037068 STP2 4851861 STP2 Pichia stipitis CBS 6054 zf-C2H2 Zinc finger, C2H2 type XP_001386910.1 3035074 D 322104 CDS PICST_29128 126275826 4851862 complement(join(3037338..3037538,3037713..3038078)) 1 NC_009068.1 predicted protein 3038078 4851862 PICST_29128 Pichia stipitis CBS 6054 predicted protein XP_001387147.1 3037338 R 322104 CDS PICST_65039 126275829 4851863 join(3038498..3038815,3038882..3039685) 1 NC_009068.1 predicted protein 3039685 4851863 PICST_65039 Pichia stipitis CBS 6054 predicted protein XP_001386911.1 3038498 D 322104 CDS PICST_53564 126275832 4851864 complement(join(3039931..3041361,3041386..3041931,3042145..3042191,3042552..3042828)) 1 NC_009068.1 go_component: nucleus; go_function: DNA binding; zinc ion binding; go_process: transcription; predicted protein 3042828 4851864 PICST_53564 Pichia stipitis CBS 6054 predicted protein XP_001387148.1 3039931 R 322104 CDS PICST_29131 126275837 4851865 3045505..3046242 1 NC_009068.1 predicted protein 3046242 4851865 PICST_29131 Pichia stipitis CBS 6054 predicted protein XP_001386912.1 3045505 D 322104 CDS PICST_66681 126275843 4851866 complement(3046349..3050053) 1 NC_009068.1 spindle pole antigen 3050053 SPA2 4851866 SPA2 Pichia stipitis CBS 6054 spindle pole antigen XP_001387149.1 3046349 R 322104 CDS PICST_53701 126275848 4851867 complement(3051674..3052327) 1 NC_009068.1 predicted protein 3052327 4851867 PICST_53701 Pichia stipitis CBS 6054 predicted protein XP_001387150.1 3051674 R 322104 CDS PICST_81007 126275853 4851868 3052907..3054583 1 NC_009068.1 go_function: nucleic acid binding; helicase activity; ATP binding; predicted protein 3054583 4851868 PICST_81007 Pichia stipitis CBS 6054 predicted protein XP_001386913.1 3052907 D 322104 CDS PICST_65041 126275856 4851869 complement(3054998..3055369) 1 NC_009068.1 go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; Protein associated with mitochondrial ATP Synthase essential for dimeric state of ATP synthase 3055369 ATP20 4851869 ATP20 Pichia stipitis CBS 6054 Protein associated with mitochondrial ATP Synthase essential for dimeric state of ATP synthase XP_001387151.1 3054998 R 322104 CDS PICST_39941 126275861 4851870 3056190..3057131 1 NC_009068.1 predicted protein 3057131 4851870 PICST_39941 Pichia stipitis CBS 6054 predicted protein XP_001386914.1 3056190 D 322104 CDS PICST_39422 126275867 4851871 complement(3057285..3058703) 1 NC_009068.1 go_component: membrane; predicted protein 3058703 4851871 PICST_39422 Pichia stipitis CBS 6054 predicted protein XP_001387152.1 3057285 R 322104 CDS PICST_34653 126275870 4851872 join(3059189..3059344,3059420..3060559) 1 NC_009068.1 predicted protein 3060559 4851872 PICST_34653 Pichia stipitis CBS 6054 predicted protein XP_001386915.1 3059189 D 322104 CDS PICST_29139 126275874 4851873 complement(3060689..3061204) 1 NC_009068.1 predicted protein 3061204 4851873 PICST_29139 Pichia stipitis CBS 6054 predicted protein XP_001387153.1 3060689 R 322104 CDS PICST_75184 126275877 4851874 3061922..3064570 1 NC_009068.1 DNA replication licensing factor, MCM4 component essential for initiation of DNA replication (CDC54); go_function: DNA binding; ATP binding; DNA-dependent ATPase activity; go_process: DNA replication initiation; DNA replication licensing factor, MCM4 component 3064570 MCM4 4851874 MCM4 Pichia stipitis CBS 6054 DNA replication licensing factor, MCM4 component XP_001386916.1 3061922 D 322104 CDS PICST_29141 126275879 4851875 complement(join(3064741..3065277,3065641..3065697)) 1 NC_009068.1 predicted protein 3065697 4851875 PICST_29141 Pichia stipitis CBS 6054 predicted protein XP_001387154.1 3064741 R 322104 CDS PICST_53617 126275881 4851876 join(3066003..3066813,3066844..3067256) 1 NC_009068.1 predicted protein 3067256 4851876 PICST_53617 Pichia stipitis CBS 6054 predicted protein XP_001386917.1 3066003 D 322104 CDS PICST_66685 126275884 4851877 complement(3067423..3069462) 1 NC_009068.1 predicted protein 3069462 4851877 PICST_66685 Pichia stipitis CBS 6054 predicted protein XP_001387155.1 3067423 R 322104 CDS PICST_53311 126275886 4851878 join(3071395..3073697,3073719..3075504) 1 NC_009068.1 predicted protein 3075504 4851878 PICST_53311 Pichia stipitis CBS 6054 predicted protein XP_001386918.1 3071395 D 322104 CDS PICST_53535 126275890 4851879 complement(3082352..>3086296) 1 NC_009068.1 predicted protein >3086296 4851879 PICST_53535 Pichia stipitis CBS 6054 predicted protein XP_001387156.1 3082352 R 322104 CDS PICST_29148 126275893 4851880 complement(join(3087787..3088132,3088197..3088258)) 1 NC_009068.1 predicted protein 3088258 4851880 PICST_29148 Pichia stipitis CBS 6054 predicted protein XP_001387157.1 3087787 R 322104 CDS PICST_29149 126275899 4851881 complement(3088453..3089172) 1 NC_009068.1 predicted protein 3089172 4851881 PICST_29149 Pichia stipitis CBS 6054 predicted protein XP_001387158.1 3088453 R 322104 CDS PICST_81186 126275902 4851882 join(3091886..3092371,3092385..3092485,3092635..3099979) 1 NC_009068.1 Ras GTPase activating protein RasGAP/neurofibromin 3099979 IRA2 4851882 IRA2 Pichia stipitis CBS 6054 Ras GTPase activating protein RasGAP/neurofibromin XP_001386919.1 3091886 D 322104 CDS PICST_53054 126275906 4851883 complement(3100164..3100979) 1 NC_009068.1 go_component: intracellular; go_function: exonuclease activity; 3'-5' exonuclease 3100979 REX4 4851883 REX4 Pichia stipitis CBS 6054 3'-5' exonuclease XP_001387159.1 3100164 R 322104 CDS PICST_66688 126275909 4851884 complement(join(3101355..3103626,3103675..3103916,3103995..3104390)) 1 NC_009068.1 hypothetical protein 3104390 4851884 PICST_66688 Pichia stipitis CBS 6054 hypothetical protein XP_001387160.1 3101355 R 322104 CDS PICST_924 126275913 4851885 <3105939..>3108569 1 NC_009068.1 phosphorylates, activates YPK1; go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine protein kinase >3108569 PKH1 4851885 PKH1 Pichia stipitis CBS 6054 serine/threonine protein kinase XP_001386920.1 <3105939 D 322104 CDS PICST_53336 126275916 4851886 join(3109854..3109884,3110368..3110747) 1 NC_009068.1 go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; 60S ribosomal protein L27 3110747 RL27 4851886 RL27 Pichia stipitis CBS 6054 60S ribosomal protein L27 XP_001386921.1 3109854 D 322104 CDS PICST_53719 126275920 4851887 3111513..3112787 1 NC_009068.1 go_function: tRNA ligase activity; ATP binding; go_process: tRNA aminoacylation for protein translation; Cytoplasmic tryptophanyl-tRNA synthetase 3112787 SYWC 4851887 SYWC Pichia stipitis CBS 6054 Cytoplasmic tryptophanyl-tRNA synthetase XP_001386922.1 3111513 D 322104 CDS PICST_29156 126275924 4851888 complement(3112953..3113390) 1 NC_009068.1 predicted protein 3113390 4851888 PICST_29156 Pichia stipitis CBS 6054 predicted protein XP_001387161.1 3112953 R 322104 CDS PICST_65046 126275927 4851889 3114215..3114826 1 NC_009068.1 go_function: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity; go_process: riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) 3114826 RIB3 4851889 RIB3 Pichia stipitis CBS 6054 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) XP_001386923.1 3114215 D 322104 CDS PICST_86849 126275931 4851890 complement(3115137..3118106) 1 NC_009068.1 go_function: RNA binding; ribonuclease activity; 3'-5' exoribonuclease required for 3 end formation of 5.8S rRNA 3118106 DIS3 4851890 DIS3 Pichia stipitis CBS 6054 3'-5' exoribonuclease required for 3 end formation of 5.8S rRNA XP_001387162.1 3115137 R 322104 CDS PICST_29159 126275934 4851891 complement(3118388..3119455) 1 NC_009068.1 predicted protein 3119455 4851891 PICST_29159 Pichia stipitis CBS 6054 predicted protein XP_001387163.1 3118388 R 322104 CDS PICST_75296 126275937 4851892 3120737..3121603 1 NC_009068.1 Essential nucleolar RNA-binding protein required for biogenesis of the 60S ribosomal subunit; RNA-binding protein required for biogenesis of the ribosomal 60S subunit 3121603 BRX1 4851892 BRX1 Pichia stipitis CBS 6054 RNA-binding protein required for biogenesis of the ribosomal 60S subunit XP_001386924.1 3120737 D 322104 CDS PICST_4422 126275940 4851893 <3122971..>3124200 1 NC_009068.1 Monocarboxylate transporter >3124200 MCH2.4 4851893 MCH2.4 Pichia stipitis CBS 6054 Monocarboxylate transporter XP_001386925.1 <3122971 D 322104 CDS PICST_39588 126275943 4851894 3125678..>3127345 1 NC_009068.1 Rhomboid-related protein 1 (RRP) (Rhomboid-like protein 1) >3127345 RRP1 4851894 RRP1 Pichia stipitis CBS 6054 Rhomboid-related protein 1 (RRP) (Rhomboid-like protein 1) XP_001386926.1 3125678 D 322104 CDS PICST_39968 126275946 4851895 3127887..3128564 1 NC_009068.1 predicted protein 3128564 4851895 PICST_39968 Pichia stipitis CBS 6054 predicted protein XP_001386927.1 3127887 D 322104 CDS PICST_29164 126275948 4851896 complement(join(3128740..3129450,3129546..3129791)) 1 NC_009068.1 go_function: transferase activity; go_process: metabolism; cis-prenyltransferase involved in dolichol synthesis 3129791 SRT1 4851896 SRT1 Pichia stipitis CBS 6054 cis-prenyltransferase involved in dolichol synthesis XP_001387164.1 3128740 R 322104 CDS PICST_52981 126275950 4851897 complement(3130302..3130952) 1 NC_009068.1 vacuolar H+-ATPase assembly protein Required for the biogenesis of a functional vacuolar ATPase (V-ATPase), but not part of the final enzyme complex.; vacuolar H+-ATPase assembly protein 3130952 VPH2 4851897 VPH2 Pichia stipitis CBS 6054 vacuolar H+-ATPase assembly protein XP_001387165.1 3130302 R 322104 CDS PICST_29166 126275953 4851898 3131606..3133435 1 NC_009068.1 CBS domain-containing protein 3133435 4851898 PICST_29166 Pichia stipitis CBS 6054 CBS domain-containing protein XP_001386928.1 3131606 D 322104 CDS PICST_53118 126275956 4851899 join(3133812..3133910,3133938..3134915,3134937..3135152) 1 NC_009068.1 Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) 3135152 SYA1 4851899 SYA1 Pichia stipitis CBS 6054 Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) XP_001386929.1 3133812 D 322104 CDS PICST_69737 126275960 4851900 complement(3135323..3136264) 1 NC_009068.1 40S ribosomal protein S9, mitochondrial precursor; go_component: intracellular; ribosome; go_component: intracellular; ribosome; go_function: structural constituent of ribosome; go_function: structural constituent of ribosome; go_process: protein biosynthesis; go_process: protein biosynthesis; mitochondrial ribosomal protein S9 3136264 RT09 4851900 RT09 Pichia stipitis CBS 6054 mitochondrial ribosomal protein S9 XP_001387166.1 3135323 R 322104 CDS PICST_66693 126275963 4851901 complement(join(3136640..3136903,3136925..3137259,3137479..3139363,3139451..3140240,3140298..3140491)) 1 NC_009068.1 Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains; go_component: nucleus; go_function: DNA binding; DNA-binding protein SNT1 3140491 SNT1 4851901 SNT1 Pichia stipitis CBS 6054 DNA-binding protein SNT1 XP_001387167.1 3136640 R 322104 CDS PICST_29170 126275968 4851902 complement(3141530..3143074) 1 NC_009068.1 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase Cell cycle control, cell division, chromosome partitioning; cell cycle control protein 3143074 CDC6 4851902 CDC6 Pichia stipitis CBS 6054 cell cycle control protein XP_001387168.1 3141530 R 322104 CDS PICST_29171 126275970 4851903 complement(3143726..3144049) 1 NC_009068.1 conserved hypothetical protein 3144049 4851903 PICST_29171 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387169.1 3143726 R 322104 CDS PICST_53294 126275972 4851904 join(3145676..3147222,3147259..3149065) 1 NC_009068.1 Hypothetical WD-40 repeat protein 3149065 4851904 PICST_53294 Pichia stipitis CBS 6054 Hypothetical WD-40 repeat protein XP_001386930.1 3145676 D 322104 CDS PICST_53602 126275976 4851905 join(3149436..3149507,3149617..3150186) 1 NC_009068.1 go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) 3150186 RPB5 4851905 RPB5 Pichia stipitis CBS 6054 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) XP_001386931.1 3149436 D 322104 CDS PICST_53707 126275980 4851906 complement(3150492..>3151289) 1 NC_009068.1 go_function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity; go_process: riboflavin biosynthesis; predicted protein >3151289 4851906 PICST_53707 Pichia stipitis CBS 6054 predicted protein XP_001387170.1 3150492 R 322104 CDS PICST_29175 126275984 4851907 complement(join(3151472..3151487,3151556..3152175)) 1 NC_009068.1 predicted protein 3152175 4851907 PICST_29175 Pichia stipitis CBS 6054 predicted protein XP_001387171.1 3151472 R 322104 CDS PICST_34675 126275988 4851908 3153681..3154691 1 NC_009068.1 Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme (FEN1); go_component: integral to membrane; Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme 3154691 ELO2 4851908 ELO2 Pichia stipitis CBS 6054 Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme XP_001386932.1 3153681 D 322104 CDS PICST_75489 126275991 4851909 complement(3154952..3155953) 1 NC_009068.1 ribokinase 3155953 RBK1 4851909 RBK1 Pichia stipitis CBS 6054 ribokinase XP_001387172.1 3154952 R 322104 CDS PICST_75393 126275994 4851910 complement(3156325..3158988) 1 NC_009068.1 Probable eukaryotic translation initiation factor 3 110 kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a); Translation initiation factor 3, subunit a (eIF-3a) 3158988 RPG1 4851910 RPG1 Pichia stipitis CBS 6054 Translation initiation factor 3, subunit a (eIF-3a) XP_001387173.1 3156325 R 322104 CDS PICST_53115 126275997 4851911 complement(3159658..>3160464) 1 NC_009068.1 predicted protein >3160464 4851911 PICST_53115 Pichia stipitis CBS 6054 predicted protein XP_001387174.1 3159658 R 322104 CDS PICST_29180 126276000 4851912 3160762..3162279 1 NC_009068.1 predicted protein 3162279 4851912 PICST_29180 Pichia stipitis CBS 6054 predicted protein XP_001386933.1 3160762 D 322104 CDS PICST_53989 126276003 4851913 complement(join(<3162870..3163112,3163221..3164005,3164030..3164261,3164511..3165311)) 1 NC_009068.1 go_function: cysteine-type endopeptidase activity; ubiquitin thiolesterase activity; go_process: ubiquitin-dependent protein catabolism; predicted protein 3165311 4851913 PICST_53989 Pichia stipitis CBS 6054 predicted protein XP_001387175.1 <3162870 R 322104 CDS PICST_86838 126276006 4851914 complement(3166210..3167034) 1 NC_009068.1 go_process: endocytosis; predicted protein 3167034 4851914 PICST_86838 Pichia stipitis CBS 6054 predicted protein XP_001387176.1 3166210 R 322104 CDS PICST_81056 126276009 4851915 join(3171846..3172066,3172136..3173786) 1 NC_009068.1 Member of a family of proteins, including Sip1p and Gal83p, that interact with Snf1p and Snf4p and are involved in the response to glucose starvation; Sip1p-Gal83p family protein 3173786 SIP2 4851915 SIP2 Pichia stipitis CBS 6054 Sip1p-Gal83p family protein XP_001386934.1 3171846 D 322104 CDS PICST_29185 126276012 4851916 complement(3174112..3175686) 1 NC_009068.1 conserved hypothetical protein 3175686 4851916 PICST_29185 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001387177.1 3174112 R 322104 CDS PICST_86905 126276014 4851917 complement(3176579..3178963) 1 NC_009068.1 go_function: ATP binding; cytoplasmic protein involved in protein transport between ER and Golgi ATPase 3178963 SEC18 4851917 SEC18 Pichia stipitis CBS 6054 cytoplasmic protein involved in protein transport between ER and Golgi ATPase XP_001387178.1 3176579 R 322104 CDS PICST_29187 126276017 4851918 join(3179693..3179983,3180194..3180211,3180534..3180701,3180875..3180934) 1 NC_009068.1 predicted protein 3180934 4851918 PICST_29187 Pichia stipitis CBS 6054 predicted protein XP_001386935.1 3179693 D 322104 CDS PICST_80937 126276020 4851919 complement(join(<3182188..3183429,3183637..3183646,3183827..3184158)) 1 NC_009068.1 Suppressor protein MPT5 (HTR1 protein) protein necessary for high temperature growth; go_function: RNA binding; protein necessary for high temperature growth 3184158 MPT5 4851919 MPT5 Pichia stipitis CBS 6054 protein necessary for high temperature growth XP_001387179.1 <3182188 R 322104 CDS PICST_29189 126276023 4851920 complement(3187146..3188693) 1 NC_009068.1 predicted protein 3188693 4851920 PICST_29189 Pichia stipitis CBS 6054 predicted protein XP_001387180.1 3187146 R 322104 CDS PICST_66703 126276026 4851921 join(3189218..3189814,3189953..3190564) 1 NC_009068.1 Nucleoporin NUP49/NSP49 (Nuclear pore protein NUP49/NSP49) localizes to discrete spots in the nuclear envelope; Nucleoporin NUP49/NSP49 (Nuclear pore protein NUP49/NSP49) 3190564 NUP49 4851921 NUP49 Pichia stipitis CBS 6054 Nucleoporin NUP49/NSP49 (Nuclear pore protein NUP49/NSP49) XP_001386936.1 3189218 D 322104 CDS PICST_29191 126276029 4851922 complement(3190866..3191792) 1 NC_009068.1 predicted protein 3191792 4851922 PICST_29191 Pichia stipitis CBS 6054 predicted protein XP_001387181.1 3190866 R 322104 CDS PICST_29192 126276032 4851923 3192007..3193728 1 NC_009068.1 predicted protein 3193728 4851923 PICST_29192 Pichia stipitis CBS 6054 predicted protein XP_001386937.1 3192007 D 322104 CDS PICST_29193 126276035 4851924 complement(3193794..3194984) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; predicted protein 3194984 4851924 PICST_29193 Pichia stipitis CBS 6054 predicted protein XP_001387182.1 3193794 R 322104 CDS PICST_66704 126276038 4851925 complement(3195361..3197526) 1 NC_009068.1 go_component: membrane; go_function: binding; go_process: transport; Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) 3197526 CMC1 4851925 CMC1 Pichia stipitis CBS 6054 Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) XP_001387183.1 3195361 R 322104 CDS PICST_27915 126276041 4851926 <3200627..>3200851 1 NC_009068.1 Putative cytochrome c oxidase, subunit COX19 >3200851 COX19 4851926 COX19 Pichia stipitis CBS 6054 Putative cytochrome c oxidase, subunit COX19 XP_001386938.1 <3200627 D 322104 CDS PICST_66706 126276044 4851927 complement(join(3205912..3206150,3206370..3208152)) 1 NC_009068.1 predicted protein 3208152 4851927 PICST_66706 Pichia stipitis CBS 6054 predicted protein XP_001387184.1 3205912 R 322104 CDS PICST_34686 126276048 4851928 join(3211882..3211928,3212194,3212329..3213993) 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; serine/threonine protein kinase 3213993 KNS1 4851928 KNS1 Pichia stipitis CBS 6054 serine/threonine protein kinase XP_001386939.1 3211882 D 322104 CDS PICST_69526 126276051 4851929 3218420..3219502 1 NC_009068.1 protein involved in control of DNA replication 3219502 SIM1 4851929 SIM1 Pichia stipitis CBS 6054 protein involved in control of DNA replication XP_001386940.1 3218420 D 322104 CDS PICST_29200 126276054 4851930 complement(join(3220181..3220209,3220473..3221391)) 1 NC_009068.1 go_component: cytoplasm; go_process: autophagic vacuole formation; Autophagy-related protein 12 (Autophagy-related ubiquitin-like modifier ATG12) 3221391 ATG12 4851930 ATG12 Pichia stipitis CBS 6054 Autophagy-related protein 12 (Autophagy-related ubiquitin-like modifier ATG12) XP_001387185.1 3220181 R 322104 CDS PICST_65061 126276058 4851931 join(3222066..3223694,3223929..3224321) 1 NC_009068.1 required for the oxidative stress response to peroxides via the the Yap1p transcription factor; YAP1 binding protein 2 (YBP2) 3224321 YBP2 4851931 YBP2 Pichia stipitis CBS 6054 YAP1 binding protein 2 (YBP2) XP_001386941.1 3222066 D 322104 CDS PICST_29203 126276060 4851932 complement(join(3226694..3228170,3228253..3228329)) 1 NC_009068.1 branched chain alpha-ketoacid dehydrogenase kinase; go_function: ATP binding; probable pyruvate dehydrogenase kinase 3228329 BCK4 4851932 BCK4 Pichia stipitis CBS 6054 probable pyruvate dehydrogenase kinase XP_001387186.1 3226694 R 322104 CDS PICST_34689 126276063 4851933 join(3228746..3228825,3228997..3229966,3230015..3230689) 1 NC_009068.1 predicted protein 3230689 4851933 PICST_34689 Pichia stipitis CBS 6054 predicted protein XP_001386942.1 3228746 D 322104 CDS PICST_66710 126276066 4851934 complement(3230881..3232404) 1 NC_009068.1 go_component: nucleus; go_function: DNA binding; go_process: regulation of transcription, DNA-dependent; predicted protein 3232404 4851934 PICST_66710 Pichia stipitis CBS 6054 predicted protein XP_001387187.1 3230881 R 322104 CDS PICST_81177 126276068 4851935 complement(join(3234405..3234950,3234981..3235691)) 1 NC_009068.1 go_function: protein binding; acyltransferase activity; go_process: metabolism; pyruvate dehydrogenase complex protein X 3235691 PDX1 4851935 PDX1 Pichia stipitis CBS 6054 pyruvate dehydrogenase complex protein X XP_001387188.1 3234405 R 322104 CDS PICST_53486 126276072 4851936 join(3237211..3239052,3239110..3239364) 1 NC_009068.1 go_component: membrane; go_function: transporter activity; go_process: transport; manganese ion transporter 3239364 SMF2 4851936 SMF2 Pichia stipitis CBS 6054 manganese ion transporter XP_001386943.1 3237211 D 322104 CDS PICST_40211 126276073 4851937 complement(<3240629..3241435) 1 NC_009068.1 go_process: response to xenobiotic stimulus; RTA protein 3241435 RTA1.3 4851937 RTA1.3 Pichia stipitis CBS 6054 RTA protein XP_001387189.1 <3240629 R 322104 CDS PICST_29209 126276077 4851938 complement(3241803..3242720) 1 NC_009068.1 go_component: integral to membrane; go_process: response to xenobiotic stimulus; putative transporter or flippase transmembrane protein 3242720 RTA1.2 4851938 RTA1.2 Pichia stipitis CBS 6054 putative transporter or flippase transmembrane protein XP_001387190.1 3241803 R 322104 CDS PICST_69500 126276080 4851939 complement(3243976..3245502) 1 NC_009068.1 go_function: phosphogluconate dehydrogenase (decarboxylating) activity; go_process: pentose-phosphate shunt; 6-phosphogluconate dehydrogenase 3245502 GND1 4851939 GND1 Pichia stipitis CBS 6054 6-phosphogluconate dehydrogenase XP_001387191.1 3243976 R 322104 CDS PICST_75451 126276087 4851940 3248849..3250420 1 NC_009068.1 go_function: sulfate adenylyltransferase (ATP) activity; go_process: sulfate assimilation; Sulfate adenylyltransferase (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase) 3250420 MET3 4851940 MET3 Pichia stipitis CBS 6054 Sulfate adenylyltransferase (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase) XP_001386944.1 3248849 D 322104 CDS PICST_80960 126276090 4851941 complement(join(3250772..3250975,3251051..3252091,3252116..3252684,3252733..3252807,3252877..3252996,3253036..3253340,3253365..3253703,3253776..3254004,3254062..3254282,3254307..3254791)) 1 NC_009068.1 homologous to Zinc Finger Protein C2H2; go_component: nucleus; go_function: nucleic acid binding; zinc ion binding; Zinc Finger Protein C2H2-like protein 3254791 ZMS1 4851941 ZMS1 Pichia stipitis CBS 6054 Zinc Finger Protein C2H2-like protein XP_001387192.1 3250772 R 322104 CDS PICST_29213 126276093 4851942 join(3258410..3258589,3258706..3260254,3260300..3260577) 1 NC_009068.1 go_component: membrane; go_function: transporter activity; go_process: transport; urea transport protein 3260577 DUR5.2 4851942 DUR5.2 Pichia stipitis CBS 6054 urea transport protein XP_001386945.1 3258410 D 322104 CDS PICST_39406 126276096 4851943 3260929..3261258 1 NC_009068.1 go_function: transcription regulator activity; predicted protein 3261258 4851943 PICST_39406 Pichia stipitis CBS 6054 predicted protein XP_001386946.1 3260929 D 322104 CDS PICST_75361 126276099 4851944 complement(3261509..3266224) 1 NC_009068.1 go_component: myosin; go_function: motor activity; ATP binding; Myosin-2 (Class V unconventional myosin MYO2) (Type V myosin heavy chain MYO2) (Myosin V MYO2) 3266224 MYO2 4851944 MYO2 Pichia stipitis CBS 6054 Myosin-2 (Class V unconventional myosin MYO2) (Type V myosin heavy chain MYO2) (Myosin V MYO2) XP_001387193.1 3261509 R 322104 CDS PICST_29215 126276102 4851945 complement(3267396..3267869) 1 NC_009068.1 predicted protein 3267869 4851945 PICST_29215 Pichia stipitis CBS 6054 predicted protein XP_001387194.1 3267396 R 322104 CDS PICST_29216 126276106 4851946 3269399..3271558 1 NC_009068.1 Leucine rich repeat protein 3271558 4851946 PICST_29216 Pichia stipitis CBS 6054 Leucine rich repeat protein XP_001386947.1 3269399 D 322104 CDS PICST_53263 126276109 4851947 join(3272139..3272367,3272563..3273806) 1 NC_009068.1 L-lactate dehydrogenase [Cytochrome]; L-lactate ferricytochrome C oxidoreductase; L-LCR; similar to ScCYB2, the expression of which is repressed by glucose and anaerobic conditions, is induced by L-lactate and is regulated by GRR1, ROX3, HAP1, HXK2 and CYC8; go_function: oxidoreductase activity; go_function: oxidoreductase activity; go_process: electron transport; go_process: electron transport; cytochrome b2, mitochondrial precursor 3273806 CYB3 4851947 CYB3 Pichia stipitis CBS 6054 cytochrome b2, mitochondrial precursor XP_001386948.1 3272139 D 322104 CDS PICST_66716 126276112 4851948 3276530..3278467 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; go_process: regulation of transcription, DNA-dependent; copper resistance protein 3278467 CRF1 4851948 CRF1 Pichia stipitis CBS 6054 copper resistance protein XP_001386949.1 3276530 D 322104 CDS PICST_39890 126276114 4851949 complement(3278731..3279999) 1 NC_009068.1 Ran-specific GTPase-activating protein 30 (Ran binding protein 30) (RANBP30) 3279999 YRB30 4851949 YRB30 Pichia stipitis CBS 6054 Ran-specific GTPase-activating protein 30 (Ran binding protein 30) (RANBP30) XP_001387195.1 3278731 R 322104 CDS PICST_53653 126276118 4851950 join(3280485..3280631,3280653..3280724,3280767..3283013) 1 NC_009068.1 go_function: DNA binding; ATP binding; nucleic acid binding; helicase activity; protein required for X-ray damage repair, mitotic recombination, and full meiotic recombination. mRNA increases in meiosis 3283013 RAD54 4851950 RAD54 Pichia stipitis CBS 6054 protein required for X-ray damage repair, mitotic recombination, and full meiotic recombination. mRNA increases in meiosis XP_001386950.1 3280485 D 322104 CDS PICST_53948 126276120 4851951 3283741..3285720 1 NC_009068.1 Osmotic growth protein Fumarate reductase (NADH) (NADH-dependent fumarate reductase) (FAD-dependent oxidoreductase FRDS) (Flavocytochrome c) (FL cyt); go_function: oxidoreductase activity; go_process: electron transport; Osmotic growth protein 3285720 OSM2 4851951 OSM2 Pichia stipitis CBS 6054 Osmotic growth protein XP_001386951.1 3283741 D 322104 CDS PICST_75530 126276123 4851952 complement(3286046..3286579) 1 NC_009068.1 go_component: glycine cleavage complex; go_process: glycine catabolism; H-protein subunit of glycine cleavage system 3286579 GCV3 4851952 GCV3 Pichia stipitis CBS 6054 H-protein subunit of glycine cleavage system XP_001387196.1 3286046 R 322104 CDS PICST_40152 126276125 4851953 complement(join(3287381..3287629,3288004..3288090)) 1 NC_009068.1 Synaptobrevin/VAMP-like protein 3288090 SNC2 4851953 SNC2 Pichia stipitis CBS 6054 Synaptobrevin/VAMP-like protein XP_001387197.1 3287381 R 322104 CDS PICST_69529 126276128 4851954 join(3290389..3290398,3291115..3292235) 1 NC_009068.1 Actin Involved in cell polarization, endocytosis and other cytoskeletal functions; go_component: actin cytoskeleton; go_function: structural constituent of cytoskeleton; Actin 3292235 ACT1 4851954 ACT1 Pichia stipitis CBS 6054 Actin XP_001386952.1 3290389 D 322104 CDS PICST_29226 126276134 4851955 complement(3292778..3293110) 1 NC_009068.1 predicted protein 3293110 4851955 PICST_29226 Pichia stipitis CBS 6054 predicted protein XP_001387198.1 3292778 R 322104 CDS PICST_75487 126276136 4851956 complement(3295657..3296628) 1 NC_009068.1 go_function: rRNA (adenine-N6,N6-)-dimethyltransferase activity; rRNA methyltransferase activity; go_process: rRNA modification; Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) 3296628 DIM1 4851956 DIM1 Pichia stipitis CBS 6054 Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (18S rRNA dimethylase) XP_001387199.1 3295657 R 322104 CDS PICST_29229 126276138 4851957 3299475..3301613 1 NC_009068.1 predicted protein 3301613 4851957 PICST_29229 Pichia stipitis CBS 6054 predicted protein XP_001386953.1 3299475 D 322104 CDS PICST_39475 126276141 4851958 complement(3301825..3302265) 1 NC_009068.1 predicted protein 3302265 4851958 PICST_39475 Pichia stipitis CBS 6054 predicted protein XP_001387200.1 3301825 R 322104 CDS PICST_81149 126276144 4851959 3302486..3304114 1 NC_009068.1 go_function: intramolecular transferase activity, phosphotransferases; go_process: carbohydrate metabolism; Phosphoacetylglucosamine Mutase 3304114 PCM1 4851959 PCM1 Pichia stipitis CBS 6054 Phosphoacetylglucosamine Mutase XP_001386954.1 3302486 D 322104 CDS PICST_29232 126276146 4851960 complement(3304415..3305122) 1 NC_009068.1 go_function: nucleic acid binding; nuclease activity; predicted protein 3305122 4851960 PICST_29232 Pichia stipitis CBS 6054 predicted protein XP_001387201.1 3304415 R 322104 CDS PICST_29233 126276149 4851961 complement(3306489..3308411) 1 NC_009068.1 predicted protein 3308411 4851961 PICST_29233 Pichia stipitis CBS 6054 predicted protein XP_001387202.1 3306489 R 322104 CDS PICST_29234 126276152 4851962 3309490..3310767 1 NC_009068.1 predicted protein 3310767 4851962 PICST_29234 Pichia stipitis CBS 6054 predicted protein XP_001386955.1 3309490 D 322104 CDS PICST_39722 126276154 4851963 complement(join(3310932..3312463,3312515..3312698)) 1 NC_009068.1 go_process: protein folding; predicted protein 3312698 4851963 PICST_39722 Pichia stipitis CBS 6054 predicted protein XP_001387203.1 3310932 R 322104 CDS PICST_66722 126276157 4851964 3313020..3313634 1 NC_009068.1 predicted protein 3313634 4851964 PICST_66722 Pichia stipitis CBS 6054 predicted protein XP_001386956.1 3313020 D 322104 CDS PICST_86817 126276160 4851965 complement(3316094..3317614) 1 NC_009068.1 Ribosome assembly protein 3317614 RSA2 4851965 RSA2 Pichia stipitis CBS 6054 Ribosome assembly protein XP_001387204.1 3316094 R 322104 CDS PICST_39705 126276163 4851966 3318177..3320882 1 NC_009068.1 Pre-mRNA splicing factor prp1 3320882 PRP1 4851966 PRP1 Pichia stipitis CBS 6054 Pre-mRNA splicing factor prp1 XP_001386957.1 3318177 D 322104 CDS PICST_53034 126276166 4851967 complement(join(3320931..3322892,3322911..3322967)) 1 NC_009068.1 Spindle assembly checkpoint component MAD1 (Mitotic arrest deficient protein 1) 3322967 MAD1 4851967 MAD1 Pichia stipitis CBS 6054 Spindle assembly checkpoint component MAD1 (Mitotic arrest deficient protein 1) XP_001387205.1 3320931 R 322104 CDS PICST_34709 126276169 4851968 join(3323288..3323298,3323489..3323891) 1 NC_009068.1 go_function: ubiquitin conjugating enzyme activity; go_process: protein modification; ubiquitin cycle; Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2) 3323891 MMS2 4851968 MMS2 Pichia stipitis CBS 6054 Ubiquitin-conjugating enzyme variant MMS2 (UEV MMS2) XP_001386958.1 3323288 D 322104 CDS PICST_29242 126276171 4851969 complement(3324296..3324688) 1 NC_009068.1 predicted protein 3324688 4851969 PICST_29242 Pichia stipitis CBS 6054 predicted protein XP_001387206.1 3324296 R 322104 CDS PICST_66725 126276174 4851970 complement(join(3325147..3326115,3326170..3326898)) 1 NC_009068.1 glycerol transporter (Glycerol uptake protein 1); glycerol transporter 3326898 GUP1 4851970 GUP1 Pichia stipitis CBS 6054 glycerol transporter XP_001387207.1 3325147 R 322104 CDS PICST_53347 126276177 4851971 3327421..3328182 1 NC_009068.1 hypothetical protein 3328182 4851971 PICST_53347 Pichia stipitis CBS 6054 hypothetical protein XP_001386959.1 3327421 D 322104 CDS PICST_40078 126276180 4851972 3328682..>3329986 1 NC_009068.1 go_function: carboxylic ester hydrolase activity; go_process: lipid metabolism; Triglyceride lipase-cholesterol esterase >3329986 TGL2 4851972 TGL2 Pichia stipitis CBS 6054 Triglyceride lipase-cholesterol esterase XP_001386960.1 3328682 D 322104 CDS PICST_29246 126276183 4851973 3331731..3333344 1 NC_009068.1 go_function: inositol-3-phosphate synthase activity; go_process: myo-inositol biosynthesis; phospholipid biosynthesis; Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) 3333344 INO1 4851973 INO1 Pichia stipitis CBS 6054 Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) XP_001386961.1 3331731 D 322104 CDS PICST_65071 126276185 4851974 3335856..3337955 1 NC_009068.1 acyl-CoA synthetase (long-chain fatty acid CoA ligase) (fatty acid activator 2), activates imported fatty acids and provides substrates for N-myristoylation; go_function: catalytic activity; go_process: metabolism; long-chain fatty acid--CoA ligase and synthetase 4 3337955 FAA4 4851974 FAA4 Pichia stipitis CBS 6054 long-chain fatty acid--CoA ligase and synthetase 4 XP_001386962.1 3335856 D 322104 CDS PICST_39982 126276187 4851975 complement(3338287..3339483) 1 NC_009068.1 go_process: amino acid metabolism; predicted protein 3339483 4851975 PICST_39982 Pichia stipitis CBS 6054 predicted protein XP_001387208.1 3338287 R 322104 CDS PICST_39924 126276190 4851976 3340433..3340759 1 NC_009068.1 similar to molybdenum cofactor synthesis protein cinnamon; COX12; putative cytochrome c oxidase subunit Vib 3340759 CIN2 4851976 CIN2 Pichia stipitis CBS 6054 putative cytochrome c oxidase subunit Vib XP_001386963.1 3340433 D 322104 CDS PICST_81262 126276193 4851977 complement(join(3340977..3341895,3341929..3343083,3343135..3343564,3343607..3345164)) 1 NC_009068.1 TRS120 targeting complex (TRAPP) component involved in ER to Golgi membrane traffic 3345164 TRS120 4851977 TRS120 Pichia stipitis CBS 6054 TRS120 targeting complex (TRAPP) component involved in ER to Golgi membrane traffic XP_001387209.1 3340977 R 322104 CDS PICST_65073 126276195 4851978 3346049..3346852 1 NC_009068.1 go_component: proteasome core complex (sensu Eukaryota); go_function: endopeptidase activity; go_process: ubiquitin-dependent protein catabolism; 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 3346852 PUP1 4851978 PUP1 Pichia stipitis CBS 6054 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 XP_001386964.1 3346049 D 322104 CDS PICST_29252 126276198 4851979 join(3347588..3347605,3347988..3349106) 1 NC_009068.1 go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; Glutathione-dependent formaldehyde dehydrogenase (FDH) (FALDH) (FLD) 3349106 FDH1 4851979 FDH1 Pichia stipitis CBS 6054 Glutathione-dependent formaldehyde dehydrogenase (FDH) (FALDH) (FLD) XP_001386965.1 3347588 D 322104 CDS PICST_86955 126276201 4851980 complement(3349402..3351396) 1 NC_009068.1 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) 3351396 UTP5 4851980 UTP5 Pichia stipitis CBS 6054 part of small (ribosomal) subunit (SSU) processosome (contains U3 snoRNA) XP_001387210.1 3349402 R 322104 CDS PICST_29254 126276204 4851981 complement(3351902..3353422) 1 NC_009068.1 Nuclear localization sequence binding protein invoved in transcription; NUF1 protein (Spindle poly body spacer protein SPC110) 3353422 NUF1 4851981 NUF1 Pichia stipitis CBS 6054 NUF1 protein (Spindle poly body spacer protein SPC110) XP_001387211.1 3351902 R 322104 CDS PICST_86747 126276207 4851982 3354425..3356188 1 NC_009068.1 go_process: electron transport; mitochondrial enzyme D-lactate ferricytochrome c oxidoreductase 3356188 DLD1 4851982 DLD1 Pichia stipitis CBS 6054 mitochondrial enzyme D-lactate ferricytochrome c oxidoreductase XP_001386966.1 3354425 D 322104 CDS PICST_29256 126276211 4851983 3356771..3357196 1 NC_009068.1 predicted protein 3357196 4851983 PICST_29256 Pichia stipitis CBS 6054 predicted protein XP_001386967.1 3356771 D 322104 CDS PICST_29257 126276214 4851984 complement(3357387..3358070) 1 NC_009068.1 predicted protein 3358070 4851984 PICST_29257 Pichia stipitis CBS 6054 predicted protein XP_001387212.1 3357387 R 322104 CDS PICST_29258 126276217 4851985 complement(3358416..3359750) 1 NC_009068.1 Dynactin subunit 4 (Dynactin subunit p62) 3359750 DYA4 4851985 DYA4 Pichia stipitis CBS 6054 Dynactin subunit 4 (Dynactin subunit p62) XP_001387213.1 3358416 R 322104 CDS PICST_40227 126276220 4851986 3360634..3361578 1 NC_009068.1 phosphoglycerol mutase related; hypothetical protein 3361578 PMU1 4851986 PMU1 Pichia stipitis CBS 6054 hypothetical protein XP_001386968.1 3360634 D 322104 CDS PICST_29260 126276223 4851987 complement(join(3362625..3362972,3363090..3363358,3363656..3363896)) 1 NC_009068.1 predicted protein 3363896 4851987 PICST_29260 Pichia stipitis CBS 6054 predicted protein XP_001387214.1 3362625 R 322104 CDS PICST_80995 126276226 4851988 join(3364975..3365206,3365444..3366717,3366736..3366963,3366982..3367345,3367358..3367809) 1 NC_009068.1 go_function: protein tyrosine phosphatase activity; go_process: protein amino acid dephosphorylation; protein tyrosine phosphatase 3367809 PTP2 4851988 PTP2 Pichia stipitis CBS 6054 protein tyrosine phosphatase XP_001386969.1 3364975 D 322104 CDS PICST_40145 126276229 4851989 complement(join(3368046..3368393,3370237..3371316)) 1 NC_009068.1 go_component: cytoplasm; go_function: disulfide oxidoreductase activity; oxidoreductase activity; go_process: electron transport; Glutathione reductase (GR) (GRase) 3371316 GLR2 4851989 GLR2 Pichia stipitis CBS 6054 Glutathione reductase (GR) (GRase) XP_001387215.1 3368046 R 322104 CDS PICST_39568 126276235 4851990 complement(3372531..3372842) 1 NC_009068.1 go_function: electron transporter activity; go_process: electron transport; thioredoxin 3372842 TRX1 4851990 TRX1 Pichia stipitis CBS 6054 thioredoxin XP_001387216.1 3372531 R 322104 CDS PICST_86656 126276237 4851991 complement(join(3373547..3374473,3374546..3375295)) 1 NC_009068.1 cytochrome c methyltransferase 3375295 CTM1 4851991 CTM1 Pichia stipitis CBS 6054 cytochrome c methyltransferase XP_001387217.1 3373547 R 322104 CDS PICST_53734 126276241 4851992 join(3376035..3376160,3376209..3376874) 1 NC_009068.1 Translation initiation factor eIF3, p35 subunit 3376874 eIF31 4851992 eIF31 Pichia stipitis CBS 6054 Translation initiation factor eIF3, p35 subunit XP_001386970.1 3376035 D 322104 CDS PICST_29266 126276244 4851993 complement(join(3377218..3377226,3377246..3377694,3377754..3377807,3377900..3377936)) 1 NC_009068.1 predicted protein 3377936 4851993 PICST_29266 Pichia stipitis CBS 6054 predicted protein XP_001387218.1 3377218 R 322104 CDS PICST_34721 126276249 4851994 3378598..3379341 1 NC_009068.1 Transport protein particle subunit trs31 (TRAPP subunit trs31); Transport protein particle (TRAPP) complex subunit 3379341 TRS31 4851994 TRS31 Pichia stipitis CBS 6054 Transport protein particle (TRAPP) complex subunit XP_001386971.1 3378598 D 322104 CDS PICST_29268 126276252 4851995 3380093..3382036 1 NC_009068.1 Hypothetical ORF; Leucine rich repeat protein; Hypothetical ORF Leucine rich repeat protein 3382036 4851995 PICST_29268 Pichia stipitis CBS 6054 Hypothetical ORF Leucine rich repeat protein XP_001386972.1 3380093 D 322104 CDS PICST_29269 126276255 4851996 3382456..3384426 1 NC_009068.1 Hypothetical ORF; Leucine rich repeat protein; Hypothetical ORF Leucine rich repeat protein 3384426 4851996 PICST_29269 Pichia stipitis CBS 6054 Hypothetical ORF Leucine rich repeat protein XP_001386973.1 3382456 D 322104 CDS PICST_34722 126276259 4851997 3385297..3385938 1 NC_009068.1 go_function: N-acetyltransferase activity; N-terminal acetyltransferase complex ARD1 subunit (Arrest-defective protein 1) 3385938 ARD1 4851997 ARD1 Pichia stipitis CBS 6054 N-terminal acetyltransferase complex ARD1 subunit (Arrest-defective protein 1) XP_001386974.1 3385297 D 322104 CDS PICST_69759 126276263 4851998 complement(3386302..3387075) 1 NC_009068.1 Partner of NOB1 Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly; go_function: nucleic acid binding; Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly 3387075 PNO1 4851998 PNO1 Pichia stipitis CBS 6054 Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly XP_001387219.1 3386302 R 322104 CDS PICST_75429 126276266 4851999 join(3388228..3389301,3389326..3390224,3390264..3390504) 1 NC_009068.1 predicted protein 3390504 4851999 PICST_75429 Pichia stipitis CBS 6054 predicted protein XP_001386975.1 3388228 D 322104 CDS PICST_29273 126276267 4852000 complement(3390660..3391535) 1 NC_009068.1 predicted protein 3391535 4852000 PICST_29273 Pichia stipitis CBS 6054 predicted protein XP_001387220.1 3390660 R 322104 CDS PICST_53814 126276271 4852001 join(<3392158..3392437,3392489..3393085,3393155..3395016) 1 NC_009068.1 predicted protein 3395016 4852001 PICST_53814 Pichia stipitis CBS 6054 predicted protein XP_001386976.1 <3392158 D 322104 CDS PICST_40230 126276275 4852002 complement(3395097..3396080) 1 NC_009068.1 go_component: transcription factor complex; go_function: RNA polymerase II transcription factor activity; go_process: transcription initiation; predicted protein 3396080 4852002 PICST_40230 Pichia stipitis CBS 6054 predicted protein XP_001387221.1 3395097 R 322104 CDS PICST_53206 126276278 4852003 complement(join(3396942..3397674,3397777..3397927,3398174..3398365,3398456..3399160,3399287..3399735,3399802..3400086,3400117..3400919)) 1 NC_009068.1 predicted protein 3400919 4852003 PICST_53206 Pichia stipitis CBS 6054 predicted protein XP_001387222.1 3396942 R 322104 CDS PICST_40120 126276281 4852004 3401331..3402245 1 NC_009068.1 predicted protein 3402245 4852004 PICST_40120 Pichia stipitis CBS 6054 predicted protein XP_001386977.1 3401331 D 322104 CDS PICST_81210 126276283 4852005 complement(join(3402522..3403147,3403584)) 1 NC_009068.1 go_component: cytoplasm; go_function: RNA binding; translation initiation factor activity; go_process: translational initiation; predicted protein 3403584 4852005 PICST_81210 Pichia stipitis CBS 6054 predicted protein XP_001387223.1 3402522 R 322104 CDS PICST_66736 126276286 4852006 complement(join(3403963..3404000,3404200..3404566)) 1 NC_009068.1 predicted protein 3404566 4852006 PICST_66736 Pichia stipitis CBS 6054 predicted protein XP_001387224.1 3403963 R 322104 CDS PICST_17370 126276289 4852007 join(<3405186..3405620,3405657..>3406763) 1 NC_009068.1 involved in protein transport step at the Brefeldin A blocks; Apoptosis antagonizing transcription factor 3405620 BFR2 4852007 BFR2 Pichia stipitis CBS 6054 Apoptosis antagonizing transcription factor XP_001386978.1 <3405186 D 322104 CDS PICST_34728 126276293 4852008 complement(3406954..3407712) 1 NC_009068.1 predicted protein 3407712 4852008 PICST_34728 Pichia stipitis CBS 6054 predicted protein XP_001387225.1 3406954 R 322104 CDS PICST_29282 126276296 4852009 3407962..>3409647 1 NC_009068.1 predicted protein >3409647 4852009 PICST_29282 Pichia stipitis CBS 6054 predicted protein XP_001386979.1 3407962 D 322104 CDS PICST_53137 126276299 4852010 complement(3409813..3411510) 1 NC_009068.1 predicted protein 3411510 4852010 PICST_53137 Pichia stipitis CBS 6054 predicted protein XP_001387226.1 3409813 R 322104 CDS PICST_29284 126276302 4852011 3412210..3413175 1 NC_009068.1 predicted protein 3413175 4852011 PICST_29284 Pichia stipitis CBS 6054 predicted protein XP_001386980.1 3412210 D 322104 CDS PICST_69779 126276303 4852012 3413596..3414081 1 NC_009068.1 go_component: proton-transporting two-sector ATPase complex; go_function: hydrogen-transporting ATP synthase activity, rotational mechanism; hydrogen-transporting ATPase activity, rotational mechanism; go_process: ATP synthesis coupled proton transport; ATP synthase delta subunit 3414081 ATP16 4852012 ATP16 Pichia stipitis CBS 6054 ATP synthase delta subunit XP_001386981.1 3413596 D 322104 CDS PICST_86924 126276306 4852013 3415993..3417084 1 NC_009068.1 Xylitol dehydrogenase (XDH) similar to SOR1 deletion blocks xylitol utilization; go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; D-xylulose reductase (Xylitol dehydrogenase) (XDH) 3417084 XYL2 4852013 XYL2 Pichia stipitis CBS 6054 D-xylulose reductase (Xylitol dehydrogenase) (XDH) XP_001386982.1 3415993 D 322104 CDS PICST_53563 126276309 4852014 3417516..3417986 1 NC_009068.1 mitochondrial ribosomal protein MRPL25 3417986 MRPL25 4852014 MRPL25 Pichia stipitis CBS 6054 mitochondrial ribosomal protein MRPL25 XP_001386983.1 3417516 D 322104 CDS PICST_40062 126276312 4852015 3419213..3420262 1 NC_009068.1 predicted protein 3420262 4852015 PICST_40062 Pichia stipitis CBS 6054 predicted protein XP_001386984.1 3419213 D 322104 CDS PICST_29289 126276316 4852016 join(3421220..3421232,3421508..3422391) 1 NC_009068.1 predicted protein 3422391 4852016 PICST_29289 Pichia stipitis CBS 6054 predicted protein XP_001386985.1 3421220 D 322104 CDS PICST_29290 126276320 4852017 complement(3422828..3423274) 1 NC_009068.1 predicted protein 3423274 4852017 PICST_29290 Pichia stipitis CBS 6054 predicted protein XP_001387227.1 3422828 R 322104 CDS PICST_53985 126276324 4852018 join(3424746..3425127,3425239..3425364,3425398..3426917,3426933..3427254,3427417..3427970) 1 NC_009068.1 go_component: integral to membrane; Ca2+/H+ antiporter 3427970 VCX1.2 4852018 VCX1.2 Pichia stipitis CBS 6054 Ca2+/H+ antiporter XP_001386986.1 3424746 D 322104 CDS PICST_29292 126276328 4852019 complement(3428017..3429738) 1 NC_009068.1 Alpha-glucosidase (Maltase) (Flocculent specific protein 2) (FSP2) Oligo-1,6-glucosidase (Oligosaccharide alpha-1,6-glucosidase) (Sucrase-isomaltase) (Isomaltase) (Dextrin 6-alpha-D-glucanohydrolase); go_function: alpha-amylase activity; go_process: carbohydrate metabolism; alpha-D-glucosidase (maltase) ( alpha-amylase) (MALT) (MAZS) 3429738 MAL9 4852019 MAL9 Pichia stipitis CBS 6054 alpha-D-glucosidase (maltase) ( alpha-amylase) (MALT) (MAZS) XP_001387228.1 3428017 R 322104 CDS PICST_53514 126276330 4852020 3430157..3430951 1 NC_009068.1 go_function: catalytic activity; predicted protein 3430951 4852020 PICST_53514 Pichia stipitis CBS 6054 predicted protein XP_001386987.1 3430157 D 322104 CDS PICST_29294 126276332 4852021 complement(join(3431082..3432115,3432173..3432812)) 1 NC_009068.1 similar to FEN2 (fenpropimorph resistance protein 2); Permease of the major facilitator superfamily; putative pantothenate transporter 3432812 FEN2 4852021 FEN2 Pichia stipitis CBS 6054 putative pantothenate transporter XP_001387229.1 3431082 R 322104 CDS PICST_11143 126276334 4852022 complement(<3433388..>3434863) 1 NC_009068.1 Suppressor of Sulfoxyde Ethionine resistance Permease of the major facilitator superfamily Carbohydrate transport and metabolism; Suppressor of Sulfoxyde Ethionine resistance >3434863 SEO1 4852022 SEO1 Pichia stipitis CBS 6054 Suppressor of Sulfoxyde Ethionine resistance XP_001387230.1 <3433388 R 322104 CDS PICST_29297 126276337 4852023 complement(3435560..3437227) 1 NC_009068.1 lactose permease, sugar transporter, putative; go_component: integral to membrane; go_function: transporter activity; go_process: transport; Lactose Permease 3437227 LAC2 4852023 LAC2 Pichia stipitis CBS 6054 Lactose Permease XP_001387231.1 3435560 R 322104 CDS PICST_40070 126276340 4852024 complement(3441345..3442103) 1 NC_009068.1 go_function: catalytic activity; predicted protein 3442103 4852024 PICST_40070 Pichia stipitis CBS 6054 predicted protein XP_001387232.1 3441345 R 322104 CDS PICST_29300 126276342 4852025 3442691..3445234 1 NC_009068.1 Beta-mannosidase precursor (Mannanase) family 2 glycoside hydrolase; beta-Galactosidase/glucuronidase domain; Galactose-binding domain; go_process: carbohydrate metabolism; Beta-mannosidase precursor (Mannanase) 3445234 MAN2 4852025 MAN2 Pichia stipitis CBS 6054 Beta-mannosidase precursor (Mannanase) XP_001386988.1 3442691 D 322104 CDS PICST_29301 126276345 4852026 3445625..3446968 1 NC_009068.1 go_function: RNA binding; go_process: amino acid biosynthesis; Glutamate 5-kinase (Gamma-glutamyl kinase) (GK) 3446968 PRO2 4852026 PRO2 Pichia stipitis CBS 6054 Glutamate 5-kinase (Gamma-glutamyl kinase) (GK) XP_001386989.1 3445625 D 322104 CDS PICST_29302 126276348 4852027 3447399..3450584 1 NC_009068.1 hypothetical protein 3450584 4852027 PICST_29302 Pichia stipitis CBS 6054 hypothetical protein XP_001386990.1 3447399 D 322104 CDS PICST_87025 126276352 4852028 complement(3450623..3451480) 1 NC_009068.1 go_component: membrane; Para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor (PHB:polyprenyltransferase) 3451480 COQ2 4852028 COQ2 Pichia stipitis CBS 6054 Para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor (PHB:polyprenyltransferase) XP_001387233.1 3450623 R 322104 CDS PICST_86664 126276355 4852029 complement(3452233..3452643) 1 NC_009068.1 ubiquitin-protein ligase Anaphase Promoting Complex 3452643 APC11 4852029 APC11 Pichia stipitis CBS 6054 ubiquitin-protein ligase Anaphase Promoting Complex XP_001387234.1 3452233 R 322104 CDS PICST_69676 126276357 4852030 complement(3452934..3454961) 1 NC_009068.1 go_function: catalytic activity; go_process: protein modification; biotin holocarboxylase synthetase 3454961 BPL1 4852030 BPL1 Pichia stipitis CBS 6054 biotin holocarboxylase synthetase XP_001387235.1 3452934 R 322104 CDS PICST_12362 126276359 4852031 <3455419..>3456441 1 NC_009068.1 conserved hypothetical protein >3456441 4852031 PICST_12362 Pichia stipitis CBS 6054 conserved hypothetical protein XP_001386991.1 <3455419 D 322104 CDS PICST_29306 126276363 4852032 3456974..3458425 1 NC_009068.1 go_component: membrane; go_function: drug transporter activity; antiporter activity; go_process: multidrug transport; predicted protein 3458425 4852032 PICST_29306 Pichia stipitis CBS 6054 predicted protein XP_001386992.1 3456974 D 322104 CDS PICST_53348 126276365 4852033 join(3458712..3459281,3459321..3459645,3459661..3460148) 1 NC_009068.1 predicted protein 3460148 4852033 PICST_53348 Pichia stipitis CBS 6054 predicted protein XP_001386993.1 3458712 D 322104 CDS PICST_69545 126276369 4852034 3460770..3461777 1 NC_009068.1 go_function: protein kinase activity; ATP binding; go_process: protein amino acid phosphorylation; alpha subunit of casein kinase II 3461777 CKA1 4852034 CKA1 Pichia stipitis CBS 6054 alpha subunit of casein kinase II XP_001386994.1 3460770 D 322104 CDS PICST_75268 126276374 4852035 3462620..3463720 1 NC_009068.1 go_process: protein folding; Peptidyl-prolyl cis-trans isomerase CPR6 (PPIase) (Rotamase) 3463720 CPR6 4852035 CPR6 Pichia stipitis CBS 6054 Peptidyl-prolyl cis-trans isomerase CPR6 (PPIase) (Rotamase) XP_001386995.1 3462620 D 322104 CDS PICST_75374 126276379 4852036 3464674..3469893 1 NC_009068.1 go_component: nucleus; DNA-directed RNA polymerase II, core complex; go_function: DNA binding; DNA-directed RNA polymerase activity; go_process: transcription; transcription from RNA polymerase II promoter; DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220) 3469893 RPO21 4852036 RPO21 Pichia stipitis CBS 6054 DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220) XP_001386996.1 3464674 D 322104 CDS PICST_53125 126276384 4852037 3470101..>3470892 1 NC_009068.1 RNase P and RNase MRP subunit >3470892 POP3 4852037 POP3 Pichia stipitis CBS 6054 RNase P and RNase MRP subunit XP_001386997.1 3470101 D 322104 CDS PICST_39313 126276391 4852038 3471221..3472198 1 NC_009068.1 DNA replication factor C 3472198 RFC4 4852038 RFC4 Pichia stipitis CBS 6054 DNA replication factor C XP_001386998.1 3471221 D 322104 CDS PICST_81251 126276397 4852039 complement(join(3472320..3472468,3472484..3472567,3472589..3472872,3472951..3473015,3473106..3473344,3473438..3473767,3473804..3474365)) 1 NC_009068.1 suppressor of actin mutation 3474365 SAC2 4852039 SAC2 Pichia stipitis CBS 6054 suppressor of actin mutation XP_001387236.1 3472320 R 322104 CDS PICST_29314 126276399 4852040 3474721..3477315 1 NC_009068.1 go_function: DNA binding; ATP-dependent DNA helicase activity; ATP binding; go_process: DNA repair; ATP-dependent DNA helicase HMI1, mitochondrial precursor 3477315 HMI1 4852040 HMI1 Pichia stipitis CBS 6054 ATP-dependent DNA helicase HMI1, mitochondrial precursor XP_001386999.1 3474721 D 322104 CDS PICST_81122 126276403 4852041 complement(join(3478403..3479450,3479487..3479944)) 1 NC_009068.1 regulator of Ty1 Transposition 3479944 RTT103 4852041 RTT103 Pichia stipitis CBS 6054 regulator of Ty1 Transposition XP_001387237.1 3478403 R 322104 CDS PICST_66746 126276407 4852042 3480661..3481662 1 NC_009068.1 similar to CSM1 Chromosome segregation in meiosis; CSM1-like protein 3481662 CSM1 4852042 CSM1 Pichia stipitis CBS 6054 CSM1-like protein XP_001387000.1 3480661 D 322104 CDS PICST_29317 126276411 4852043 complement(3481756..3482268) 1 NC_009068.1 hypothetical protein 3482268 4852043 PICST_29317 Pichia stipitis CBS 6054 hypothetical protein XP_001387238.1 3481756 R 322104 CDS PICST_53528 126276415 4852044 complement(join(3482628..3482691,3482722..3483017)) 1 NC_009068.1 Cytochrome oxidase assembly 3483017 COX16 4852044 COX16 Pichia stipitis CBS 6054 Cytochrome oxidase assembly XP_001387239.1 3482628 R 322104 CDS PICST_3255 126276418 4852045 complement(<3492066..3493256) 1 NC_009068.1 hyphally regulated cell wall protein 3493256 HYR6.1 4852045 HYR6.1 Pichia stipitis CBS 6054 hyphally regulated cell wall protein XP_001387240.1 <3492066 R 322104 CDS PICST_53027 126276421 4852046 complement(3497150..3498937) 1 NC_009068.1 go_function: glycerone kinase activity; go_process: glycerol metabolism; Dihydroxyacetone kinase 1 (Glycerone kinase 1) (DHA kinase 1) 3498937 DAK1.2 4852046 DAK1.2 Pichia stipitis CBS 6054 Dihydroxyacetone kinase 1 (Glycerone kinase 1) (DHA kinase 1) XP_001387241.1 3497150 R 322104 CDS PICST_40173 126276427 4852047 complement(<3499935..3501338) 1 NC_009068.1 xylose transporter (tentative) similarity to GXS1 (STL1); go_component: integral to membrane; go_function: transporter activity; go_process: transport; Sugar transporter 3501338 XUT2 4852047 XUT2 Pichia stipitis CBS 6054 Sugar transporter XP_001387242.1 <3499935 R 322104 CDS PICST_40172 126276430 4852048 3501783..3502928 1 NC_009068.1 sorbitol dehydrogenase similar to L-arabinitol 4-dehydrogenase; go_function: alcohol dehydrogenase activity, zinc-dependent; zinc ion binding; Sorbitol dehydrogenase (L-iditol 2-dehydrogenase) 3502928 SOR3 4852048 SOR3 Pichia stipitis CBS 6054 Sorbitol dehydrogenase (L-iditol 2-dehydrogenase) XP_001387001.1 3501783 D 322104 CDS PICST_53327 126276435 4852049 3503563..3505665 1 NC_009068.1 Dihydroxyacetone synthase (DHAS) (Formaldehyde transketolase) (Glycerone synthase) (TKL) (TKT) (TK 1); go_function: formaldehyde transketolase activity; Dihydroxyacetone synthase (DHAS) (TKL2) (Formaldehyde transketolase) (Glycerone synthase) 3505665 DHA1 4852049 DHA1 Pichia stipitis CBS 6054 Dihydroxyacetone synthase (DHAS) (TKL2) (Formaldehyde transketolase) (Glycerone synthase) XP_001387002.1 3503563 D 322104 CDS PICST_39662 126276440 4852050 join(3505939..3506296,3506594..3507777,3507833..3507891,3507954..3508131) 1 NC_009068.1 go_component: nucleus; go_function: transcription factor activity; zinc ion binding; go_process: regulation of transcription, DNA-dependent; predicted protein 3508131 4852050 PICST_39662 Pichia stipitis CBS 6054 predicted protein XP_001387003.1 3505939 D 322104 CDS