-- dump date 20120504_151908 -- class Genbank::CDS -- table cds_note -- id note YP_004472082.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: pmy:Pmen_0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004472083.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: pmy:Pmen_0002 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, C-terminal YP_004472084.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA-binding, RecF; KEGG: ppf:Pput_0003 recombination protein F; PFAM: RecF/RecN/SMC YP_004472085.1 SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase, subunit B; KEGG: pmy:Pmen_0004 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004472086.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pmy:Pmen_0005 phosphatidate cytidylyltransferase YP_004472087.1 KEGG: pmy:Pmen_0006 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004472088.1 KEGG: pfl:PFL_6198 hypothetical protein YP_004472089.1 KEGG: pmy:Pmen_0008 dual specificity protein phosphatase; PFAM: Dual specificity phosphatase, catalytic domain; phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Dual specificity phosphatase, subgroup, catalytic domain YP_004472090.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_0009 alpha/beta hydrolase fold YP_004472091.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pmy:Pmen_0010 CDP-alcohol phosphatidyltransferase YP_004472092.1 KEGG: pmy:Pmen_0011 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004472093.1 KEGG: pen:PSEEN0015 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase YP_004472094.1 TIGRFAM: glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: pmy:Pmen_0013 glycyl-tRNA synthetase subunit beta YP_004472095.1 PFAM: glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: pap:PSPA7_0009 glycyl-tRNA synthetase subunit alpha YP_004472096.1 PFAM: PepSY-associated TM helix; KEGG: rsh:Rsph17029_3600 PepSY-associated TM helix domain-containing protein YP_004472097.1 KEGG: rsk:RSKD131_4272 hypothetical protein YP_004472098.1 KEGG: rsk:RSKD131_4273 hypothetical protein YP_004472099.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: pap:PSPA7_0010 DNA-3-methyladenine glycosidase I; PFAM: methyladenine glycosylase YP_004472100.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: bph:Bphy_4713 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_004472101.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: pst:PSPTO_0182 lipid A biosynthesis lauroyl acyltransferase YP_004472102.1 PFAM: Type IV pilus assembly PilZ; KEGG: pap:PSPA7_0012 hypothetical protein YP_004472103.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Ectoine/hydroxyectoine ABC transporter ATP-binding protein; KEGG: psa:PST_0014 amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004472104.1 KEGG: psa:PST_0015 amino acid ABC transporter permease; TIGRFAM: Ectoine/hydroxyectoine ABC transporter permease EhuD; Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004472105.1 KEGG: psa:PST_0016 amino acid ABC transporter permease; TIGRFAM: Ectoine/hydroxyectoine ABC transporter permease EhuC; Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004472106.1 TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: psa:PST_0017 amino acid ABC transporter periplasmic amino acid-binding protein; SMART: Extracellular solute-binding protein, family 3 YP_004472107.1 KEGG: pap:PSPA7_4375 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004472108.1 KEGG: pap:PSPA7_4376 ectoine utilization protein EutB; TIGRFAM: Ectoine utilization protein EutB; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004472109.1 TIGRFAM: Ectoine utilization protein EutC; KEGG: pap:PSPA7_4377 ectoine utilization protein EutC; PFAM: Ornithine cyclodeaminase/mu-crystallin YP_004472110.1 KEGG: pap:PSPA7_4378 ectoine utilization protein EutD; TIGRFAM: Ectoine utilization protein EutD; PFAM: Creatinase; peptidase M24, structural domain YP_004472111.1 KEGG: pap:PSPA7_4379 ectoine utilization protein EutE; TIGRFAM: Ectoine utilization protein EutE; PFAM: Succinylglutamate desuccinylase/aspartoacylase YP_004472112.1 KEGG: pap:PSPA7_4380 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004472113.1 KEGG: pmy:Pmen_0063 glycine/betaine ABC transporter substrate-binding protein; TIGRFAM: ABC transporter choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain YP_004472114.1 PFAM: NLP/P60; KEGG: pmy:Pmen_0018 NLP/P60 protein YP_004472115.1 KEGG: pmy:Pmen_0050 hypothetical protein; TIGRFAM: protein of unknown function DUF165; PFAM: protein of unknown function DUF165 YP_004472116.1 KEGG: pap:PSPA7_4381 succinate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004472117.1 KEGG: pap:PSPA7_4382 hypothetical protein; PFAM: Aminotransferase class-III YP_004472118.1 PFAM: Major facilitator superfamily MFS-1; KEGG: psa:PST_0565 major facilitator family transporter YP_004472119.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psa:PST_0564 LysR family transcriptional regulator YP_004472120.1 KEGG: pfs:PFLU3358 methyl-accepting chemotaxis receptor protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004472121.1 KEGG: pmy:Pmen_0051 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004472122.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: pmy:Pmen_0052 potassium transporter peripheral membrane component YP_004472123.1 KEGG: pmy:Pmen_0053 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44 YP_004472124.1 PFAM: formyl transferase, N-terminal; formyl transferase, C-terminal; TIGRFAM: methionyl-tRNA formyltransferase; HAMAP: methionyl-tRNA formyltransferase; KEGG: psb:Psyr_0018 methionyl-tRNA formyltransferase YP_004472125.1 TIGRFAM: formylmethionine deformylase; HAMAP: formylmethionine deformylase; KEGG: pmy:Pmen_0055 peptide deformylase; PFAM: formylmethionine deformylase YP_004472126.1 KEGG: pmy:Pmen_0056 peptidoglycan-binding LysM; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup YP_004472127.1 KEGG: pmy:Pmen_0057 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004472128.1 KEGG: psa:PST_0024 hypothetical protein; HAMAP: ribosome maturation factor rimN; PFAM: Sua5/YciO/YrdC, N-terminal YP_004472129.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: pmy:Pmen_0059 alcohol dehydrogenase; SMART: polyketide synthase, enoylreductase YP_004472130.1 HAMAP: Coproporphyrinogen III oxidase; KEGG: ppg:PputGB1_0089 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase YP_004472131.1 TIGRFAM: Shikimate dehydrogenase; HAMAP: Shikimate, quinate/shikimate dehydrogenase; KEGG: pmy:Pmen_0061 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004472132.1 KEGG: pap:PSPA7_4140 L-malate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase YP_004472133.1 KEGG: avn:Avin_49380 hypothetical protein YP_004472134.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; KEGG: pmy:Pmen_4574 precorrin-6Y C5,15-methyltransferase (decarboxylating) / precorrin-3 methyltransferase; PFAM: Tetrapyrrole methylase; Cobalamin (vitamin B12) biosynthesis CbiG, core YP_004472135.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; KEGG: pmy:Pmen_4573 precorrin-2 C(20)-methyltransferase; PFAM: Tetrapyrrole methylase YP_004472136.1 KEGG: pmy:Pmen_4572 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core YP_004472137.1 PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; manually curated; KEGG: pag:PLES_21581 oxidoreductase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobG-like YP_004472138.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; KEGG: pmy:Pmen_4570 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Tetrapyrrole methylase YP_004472139.1 KEGG: pag:PLES_21551 cobalt-precorrin-6x reductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase YP_004472140.1 KEGG: pmy:Pmen_4568 hypothetical protein YP_004472141.1 KEGG: pmy:Pmen_4562 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004472142.1 KEGG: pmy:Pmen_4561 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004472143.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: pmy:Pmen_4560 TRAP transporter solute receptor TAXI family protein YP_004472144.1 KEGG: psa:PST_4125 transporter TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004472145.1 PFAM: protein of unknown function DUF1850; KEGG: pmy:Pmen_4558 hypothetical protein YP_004472146.1 KEGG: pmy:Pmen_2617 ion transport protein; manually curated; PFAM: Ion transport YP_004472147.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_4582 GCN5-related N-acetyltransferase YP_004472148.1 KEGG: ppg:PputGB1_5413 hypothetical protein YP_004472149.1 KEGG: psp:PSPPH_3439 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004472150.1 KEGG: psp:PSPPH_3438 short chain dehydrogenase/reductase oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004472151.1 KEGG: psp:PSPPH_3437 hypothetical protein YP_004472152.1 PFAM: Sodium/solute symporter; KEGG: psp:PSPPH_3436 sodium/solute symporter YP_004472153.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: psp:PSPPH_3435 4-hydroxythreonine-4-phosphate dehydrogenase YP_004472154.1 PFAM: protein of unknown function, DUF1537; KEGG: bcm:Bcenmc03_6953 hypothetical protein YP_004472155.1 KEGG: bac:BamMC406_5965 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004472156.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: bgl:bglu_2g15200 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase YP_004472157.1 HAMAP: Cardiolipin synthase; PFAM: phospholipase D/transphosphatidylase; KEGG: pfl:PFL_6186 cardiolipin synthetase; SMART: phospholipase D/transphosphatidylase YP_004472158.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ppw:PputW619_2262 permease for cytosine/purines uracil thiamine allantoin YP_004472159.1 PFAM: Luciferase-like, subgroup; KEGG: ppu:PP_3644 luciferase YP_004472160.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pen:PSEEN3038 polyamine ABC transporter periplasmic polyamine-binding protein YP_004472161.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: ppf:Pput_1952 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004472162.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3040 polyamine ABC transporter permease YP_004472163.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_3448 binding-protein-dependent transport systems inner membrane component YP_004472164.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pfs:PFLU2343 polyamine ABC transporter exported protein YP_004472165.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; KEGG: pen:PSEEN3037 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA YP_004472166.1 PFAM: protein of unknown function DUF1330; KEGG: pfo:Pfl01_3239 hypothetical protein YP_004472167.1 PFAM: Carbohydrate/purine kinase; KEGG: pfo:Pfl01_4135 PfkB YP_004472168.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: psb:Psyr_2922 permease for cytosine/purines, uracil, thiamine, allantoin YP_004472169.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: psb:Psyr_2921 ADP-ribosylglycohydrolase YP_004472170.1 KEGG: psb:Psyr_2920 transcriptional regulator GntR; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated YP_004472171.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mms:mma_1578 LysR family transcriptional regulator YP_004472172.1 PFAM: Drug/metabolite transporter; KEGG: ppg:PputGB1_2236 hypothetical protein YP_004472173.1 PFAM: NUDIX hydrolase domain; KEGG: pmy:Pmen_3444 NUDIX hydrolase YP_004472174.1 KEGG: psb:Psyr_2405 transcriptional regulator GntR; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004472175.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pmy:Pmen_3442 4-carboxymuconolactone decarboxylase YP_004472176.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: pmy:Pmen_3441 succinate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004472177.1 KEGG: pmy:Pmen_3440 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_004472178.1 KEGG: pmy:Pmen_3439 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain YP_004472179.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_3438 3-oxoadipate enol-lactonase YP_004472180.1 PFAM: protein of unknown function DUF1185; KEGG: ppw:PputW619_2259 hypothetical protein YP_004472181.1 KEGG: pfl:PFL_6177 GTP cyclohydrolase; PFAM: GTP cyclohydrolase FolE2/MptA YP_004472182.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: pap:PSPA7_6338 RNA polymerase-binding protein DksA YP_004472183.1 KEGG: pfs:PFLU6085 cobalamine biosynthesis-like protein; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_004472184.1 PFAM: protein of unknown function DUF1826; KEGG: pmy:Pmen_4535 hypothetical protein YP_004472185.1 PFAM: peptidase M10, metallopeptidase; Haemolysin-type calcium-binding repeat; KEGG: pmy:Pmen_4542 serralysin; SMART: peptidase, metallopeptidase YP_004472186.1 KEGG: pap:PSPA7_6335 hypothetical protein YP_004472187.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: pmy:Pmen_4533 cobalamin synthesis protein, P47K YP_004472188.1 KEGG: smt:Smal_1691 hypothetical protein YP_004472189.1 KEGG: pap:PSPA7_6332 MFS dicarboxylate transporter; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter YP_004472190.1 KEGG: pau:PA14_72720 two-component response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004472191.1 KEGG: pag:PLES_59081 two-component sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004472192.1 KEGG: pfl:PFL_6170 hypothetical protein YP_004472193.1 KEGG: pag:PLES_59141 potassium efflux transporter; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal YP_004472194.1 PFAM: Thioesterase superfamily; KEGG: pfo:Pfl01_5649 thioesterase superfamily protein YP_004472195.1 KEGG: pmy:Pmen_4527 hypothetical protein YP_004472196.1 PFAM: Cation/H+ exchanger; KEGG: ppw:PputW619_5133 sodium/hydrogen exchanger YP_004472197.1 KEGG: pmy:Pmen_4522 hypothetical protein; PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; SMART: Cell wall assembly/cell proliferation coordinating protein, KNR4-like YP_004472198.1 KEGG: ppw:PputW619_5131 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter Tim44-related/ribosomal protein L45; SMART: Membrane transporter Tim44-related/ribosomal protein L45 YP_004472199.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: pmy:Pmen_4514 TRAP dicarboxylate transporter-DctP subunit YP_004472200.1 PFAM: DNA helicase, UvrD/REP type; KEGG: pmy:Pmen_4513 DNA-dependent helicase II YP_004472201.1 PFAM: polypeptide-transport-associated, ShlB-type; Haemolysin activator HlyB; KEGG: pae:PA0040 hypothetical protein YP_004472202.1 TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; Adhesin HecA 20-residue repeat x2; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial; KEGG: pfl:PFL_0622 adhesin/hemagglutinin; SMART: Signal transduction histidine kinase, HWE region YP_004472203.1 KEGG: pfs:PFLU3190 hypothetical protein YP_004472204.1 KEGG: acd:AOLE_13830 hypothetical protein YP_004472205.1 KEGG: pfs:PFLU0148A transposase YP_004472206.1 KEGG: vap:Vapar_4524 hypothetical protein YP_004472207.1 manually curated; KEGG: pfs:PFLU0149 hypothetical protein YP_004472208.1 KEGG: pfs:PFLU2375 aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_004472209.1 KEGG: pfs:PFLU4228 hypothetical protein YP_004472210.1 KEGG: she:Shewmr4_0850 hypothetical protein YP_004472211.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_1252 alpha/beta fold family hydrolase-like protein YP_004472212.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_4494 major facilitator transporter YP_004472213.1 PFAM: Sulphate transporter; KEGG: pmy:Pmen_0062 sulphate transporter YP_004472214.1 KEGG: pmy:Pmen_0063 glycine/betaine ABC transporter substrate-binding protein; TIGRFAM: ABC transporter choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain YP_004472215.1 TIGRFAM: Choline-sulfatase; KEGG: pmy:Pmen_0064 sulfatase; PFAM: Sulfatase YP_004472216.1 KEGG: pmy:Pmen_0065 LysR family transcriptional regulator; TIGRFAM: transcription factor, choline sulphate-utilisation, PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004472217.1 PFAM: Dopa 4,5-dioxygenase; KEGG: pap:PSPA7_0035 dopa 4,5-dioxygenase YP_004472218.1 PFAM: Drug/metabolite transporter; KEGG: pap:PSPA7_1652 hypothetical protein YP_004472219.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; KEGG: psa:PST_0030 D-alanyl-D-alanine endopeptidase YP_004472220.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pag:PLES_00571 transcriptional regulator YP_004472221.1 KEGG: rsl:RPSI07_mp0455 conserved hypothethical protein, NAD(P)-binding YP_004472222.1 KEGG: psp:PSPPH_2957 Mn2+/Fe2+ transporter YP_004472223.1 KEGG: pva:Pvag_3071 D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004472224.1 PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: pfs:PFLU0035 tryptophan synthase subunit alpha YP_004472225.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain/beta chain-like; KEGG: psa:PST_2895 tryptophan synthase subunit beta YP_004472226.1 KEGG: pmy:Pmen_0072 hypothetical protein YP_004472227.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: psa:PST_2894 transcriptional regulator TrpI YP_004472228.1 KEGG: psa:PST_2893 hypothetical protein YP_004472229.1 TIGRFAM: Glyoxalase I; KEGG: pmy:Pmen_4207 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004472230.1 KEGG: pmy:Pmen_4206 phosphodiesterase; TIGRFAM: phosphodiesterase MJ0936; PFAM: Metallo-dependent phosphatase YP_004472231.1 PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: pfo:Pfl01_5358 dihydroxy-acid dehydratase YP_004472232.1 SMART: Signal transduction response regulator, receiver domain; HAMAP: Signal transduction response regulator, chemotaxis, CheB; KEGG: mei:Msip34_2702 chemotaxis protein CheB; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain YP_004472233.1 KEGG: hch:HCH_03704 chemotaxis protein, stimulates methylation of MCP protein; HAMAP: Chemoreceptor glutamine deamidase CheD YP_004472234.1 PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: slt:Slit_1585 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_004472235.1 KEGG: tin:Tint_1230 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004472236.1 KEGG: sdn:Sden_3297 chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004472237.1 KEGG: slt:Slit_1587 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004472238.1 KEGG: slt:Slit_1588 CheA signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; CheW-like protein YP_004472239.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: tin:Tint_1234 anti-sigma-factor antagonist YP_004472240.1 KEGG: rcu:RCOM_1806820 two-component system sensor histidine kinase/response regulator, PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472241.1 KEGG: slt:Slit_1591 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004472242.1 KEGG: ddd:Dda3937_03346 DNA-binding response regulator, LuxR family, near polyamine transporter; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004472243.1 PFAM: methyltransferase small; KEGG: pmy:Pmen_4199 SAM-dependent methyltransferase YP_004472244.1 KEGG: psa:PST_4009 protease PfpI; TIGRFAM: peptidase C56, PfpI; PFAM: ThiJ/PfpI YP_004472245.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pap:PSPA7_0449 hypothetical protein YP_004472246.1 KEGG: pmy:Pmen_4197 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: formamidopyrimidine-DNA glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain YP_004472247.1 KEGG: psa:PST_4006 cation/multidrug efflux pump YP_004472248.1 TIGRFAM: gamma-glutamyltranspeptidase; KEGG: pen:PSEEN0288 gamma-glutamyltranspeptidase precursor; PFAM: gamma-glutamyltranspeptidase YP_004472249.1 PFAM: 4Fe-4S binding domain; KEGG: pmy:Pmen_4192 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004472250.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: ppg:PputGB1_5173 phosphopantetheine adenylyltransferase YP_004472251.1 KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004472252.1 KEGG: pmy:Pmen_4190 hypothetical protein YP_004472253.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_4180 alpha/beta hydrolase fold YP_004472254.1 TIGRFAM: RNA methyltransferase, RsmD; KEGG: avn:Avin_03510 methyltransferase; PFAM: RNA methyltransferase, RsmD YP_004472255.1 PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; KEGG: pae:PA0371 hypothetical protein YP_004472256.1 KEGG: pmy:Pmen_4176 peptidase M16 domain-containing protein; PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal YP_004472257.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: psb:Psyr_4751 cell division transporter substrate-binding protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004472258.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division ATP-binding protein FtsE; KEGG: psp:PSPPH_4780 cell division ATP-binding protein FtsE; PFAM: ABC transporter-like YP_004472259.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: pmy:Pmen_4173 cell division protein FtsX YP_004472260.1 KEGG: pmy:Pmen_4172 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004472261.1 TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: psa:PST_3986 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51 YP_004472262.1 PFAM: protein of unknown function DUF423; KEGG: pmy:Pmen_4169 hypothetical protein YP_004472263.1 KEGG: pap:PSPA7_0479 sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS YP_004472264.1 KEGG: psa:PST_3983 thiazole synthase; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis YP_004472265.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; KEGG: psa:PST_3982 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004472266.1 KEGG: pfl:PFL_0352 hypothetical protein YP_004472267.1 PFAM: Drug/metabolite transporter; KEGG: bph:Bphy_0518 hypothetical protein YP_004472268.1 KEGG: pmy:Pmen_4384 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004472269.1 TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: pmy:Pmen_4383 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004472270.1 KEGG: pmy:Pmen_4382 hypothetical protein YP_004472271.1 PFAM: Thioesterase superfamily; KEGG: pmy:Pmen_0082 thioesterase superfamily protein YP_004472272.1 TIGRFAM: phosphate binding protein; KEGG: psa:PST_4027 phosphate ABC transporter periplasmic phosphate-binding protein YP_004472273.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0180 binding-protein-dependent transport systems inner membrane component YP_004472274.1 KEGG: psa:PST_4025 membrane protein component of ABC phosphate transporter; TIGRFAM: phosphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004472275.1 SMART: ATPase, AAA+ type, core; TIGRFAM: phosphate ABC transporter permease 1; KEGG: pmy:Pmen_0182 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like YP_004472276.1 KEGG: pmy:Pmen_0183 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU YP_004472277.1 KEGG: pmy:Pmen_0184 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472278.1 TIGRFAM: Cryptochrome, DASH; KEGG: cya:CYA_0303 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004472279.1 PFAM: Multiple antibiotic resistance (MarC)-related; KEGG: pmy:Pmen_0164 multiple antibiotic resistance (MarC)-related protein YP_004472280.1 KEGG: pmy:Pmen_0165 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; peptidoglycan binding-like; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004472281.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS fold-4; KEGG: psb:Psyr_0264 PAS; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS YP_004472282.1 KEGG: pst:PSPTO_0334 alginate biosynthesis transcriptional regulatory protein AlgB; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004472283.1 KEGG: pmy:Pmen_0177 transport-associated; PFAM: transport-associated; SMART: transport-associated and nodulation domain, bacteria YP_004472284.1 KEGG: pmy:Pmen_0178 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function DUF2383 YP_004472285.1 KEGG: hau:Haur_1806 substrate-binding protein YP_004472286.1 KEGG: pmy:Pmen_0080 hypothetical protein; HAMAP: protein of unknown function DUF1328; PFAM: protein of unknown function DUF1328 YP_004472287.1 PFAM: Inhibitor of vertebrate lysozyme; KEGG: pmy:Pmen_0079 hypothetical protein YP_004472288.1 PFAM: nucleoside recognition; KEGG: pmy:Pmen_0078 nucleoside recognition domain-containing protein YP_004472289.1 manually curated; KEGG: pap:PSPA7_6275 hypothetical protein YP_004472290.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_4430 LysR family transcriptional regulator YP_004472291.1 KEGG: pmy:Pmen_4429 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain; acyl-CoA oxidase/dehydrogenase, type 1 YP_004472292.1 KEGG: ppf:Pput_0178 formyl-CoA transferase; PFAM: CoA-transferase III YP_004472293.1 PFAM: NnrS; KEGG: pau:PA14_29660 hypothetical protein YP_004472294.1 HAMAP: Flavohemoprotein; KEGG: pap:PSPA7_2535 nitric oxide dioxygenase; PFAM: Oxidoreductase, FAD-binding domain; Globin, subset; Oxidoreductase FAD/NAD(P)-binding YP_004472295.1 KEGG: pmy:Pmen_3579 anaerobic nitric oxide reductase transcription regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF YP_004472296.1 PFAM: Domain of unknown function DUF1206; KEGG: psa:PST_1247 hypothetical protein YP_004472298.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: ppw:PputW619_4999 succinate-semialdehyde dehydrogenase I; PFAM: Aldehyde dehydrogenase domain YP_004472299.1 TIGRFAM: 4-aminobutyrate aminotransferase, bacterial; KEGG: pmy:Pmen_0232 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III YP_004472300.1 KEGG: pmy:Pmen_4372 signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472301.1 KEGG: pmy:Pmen_4368 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: Pyridine nucleotide-disulphide oxidoreductase, N-terminal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004472302.1 KEGG: pmy:Pmen_4367 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004472303.1 manually curated; KEGG: pap:PSPA7_3763 hypothetical protein YP_004472304.1 KEGG: pmy:Pmen_4366 glutamine synthetase, catalytic region; PFAM: glutamine synthetase, catalytic domain YP_004472305.1 PFAM: FAD dependent oxidoreductase; KEGG: pmy:Pmen_4365 FAD dependent oxidoreductase YP_004472306.1 KEGG: ppw:PputW619_3396 xanthine permease; TIGRFAM: xanthine permease; xanthine/uracil permease; PFAM: xanthine/uracil/vitamin C permease YP_004472307.1 TIGRFAM: Taurine ABC transporter substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: pag:PLES_10381 periplasmic taurine-binding protein precursor; SMART: Extracellular solute-binding protein, family 3 YP_004472308.1 PFAM: ABC transporter-like; KEGG: pau:PA14_12940 taurine ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004472309.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pag:PLES_10401 permease of ABC taurine transporter YP_004472310.1 KEGG: pap:PSPA7_1172 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA YP_004472311.1 KEGG: hse:Hsero_0504 metal-dependent phosphohydrolase; PFAM: HAMP linker domain; Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain YP_004472312.1 PFAM: Dodecin flavoprotein; KEGG: pfs:PFLU0039 hypothetical protein YP_004472313.1 PFAM: protein of unknown function DUF1161; KEGG: psp:PSPPH_0040 hypothetical protein YP_004472314.1 KEGG: pmy:Pmen_4452 luciferase; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004472315.1 TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; KEGG: pmy:Pmen_4453 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein YP_004472316.1 KEGG: pmy:Pmen_4454 hypothetical protein YP_004472317.1 PFAM: aminopeptidase; KEGG: pmy:Pmen_4455 aminopeptidase-like protein YP_004472318.1 PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0044 hypothetical protein YP_004472319.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: pmy:Pmen_4457 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase YP_004472320.1 KEGG: pmy:Pmen_4458 hypothetical protein YP_004472321.1 KEGG: yen:YE3620 iron-enterobactin transporter permease YP_004472322.1 KEGG: pag:PLES_24191 hypothetical protein; TIGRFAM: Rhs element Vgr protein, subgroup; Rhs element Vgr protein; PFAM: protein of unknown function DUF2345; Gp5, C-terminal YP_004472323.1 TIGRFAM: ATPase, type VI secretion system, ClpV1; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: pmy:Pmen_2331 ATPase; SMART: ATPase, AAA+ type, core YP_004472324.1 KEGG: pag:PLES_00901 hypothetical protein; TIGRFAM: protein of unknown function DUF1305; PFAM: protein of unknown function DUF1305 YP_004472325.1 KEGG: pap:PSPA7_0160 hypothetical protein; TIGRFAM: Type VI secretion system, VCA0110; PFAM: Type VI secretion system, VCA0110 YP_004472326.1 KEGG: pmy:Pmen_2328 gpW/GP25 family protein; TIGRFAM: Type VI secretion system, lysozyme-related; PFAM: GPW/gp25 YP_004472327.1 PFAM: virulence protein, SciE type; KEGG: pmy:Pmen_2327 virulence protein, SciE type YP_004472328.1 KEGG: pag:PLES_00861 hypothetical protein; TIGRFAM: Type VI secretion system effector, Hcp1; PFAM: Virulence factor, secretion apparatus YP_004472329.1 KEGG: pag:PLES_00851 hypothetical protein; TIGRFAM: protein of unknown function DUF877; PFAM: protein of unknown function DUF877 YP_004472330.1 KEGG: pap:PSPA7_0155 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP028301; PFAM: Uncharacterised conserved protein UCP028301 YP_004472331.1 KEGG: pae:PA0082 hypothetical protein; TIGRFAM: Type VI secretion system-associated, ImpA; PFAM: ImpA, N-terminal YP_004472332.1 TIGRFAM: Type VI secretion system, FHA domain-containing; PFAM: Forkhead-associated (FHA) domain; KEGG: pap:PSPA7_0152 hypothetical protein; SMART: Forkhead-associated (FHA) domain YP_004472333.1 TIGRFAM: Type VI secretion system, lipoprotein VCA0113; KEGG: pmy:Pmen_2319 hypothetical protein YP_004472334.1 KEGG: pag:PLES_00801 hypothetical protein; TIGRFAM: protein of unknown function DUF876; PFAM: protein of unknown function DUF876 YP_004472335.1 KEGG: pap:PSPA7_0149 hypothetical protein; TIGRFAM: Type IV / VI secretion system, DotU; Type VI secretion system, OmpA/MotB; PFAM: Type IV / VI secretion system, DotU; Outer membrane protein, OmpA/MotB, C-terminal YP_004472336.1 KEGG: pmy:Pmen_2316 ImcF domain-containing protein; TIGRFAM: Type VI secretion system, IcmF; PFAM: ImcF-related; Domain of unknown function DUF1215 YP_004472337.1 KEGG: pmy:Pmen_2315 hypothetical protein; TIGRFAM: Type VI secretion system-associated, BMAA0400; PFAM: Type VI secretion system-associated, BMAA0400 YP_004472338.1 KEGG: pmy:Pmen_2314 protein phosphatase 2C domain-containing protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-like YP_004472339.1 PFAM: serine/threonine-protein kinase-like domain; KEGG: pfs:PFLU6010 serine/threonine protein kinase; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain YP_004472340.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_2312 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004472341.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: pmy:Pmen_2311 hypothetical protein YP_004472342.1 PFAM: Sulphatase-modifying factor; KEGG: pfl:PFL_6075 hypothetical protein YP_004472343.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: pau:PA14_00820 hypothetical protein YP_004472344.1 PFAM: Cytochrome c, class I; KEGG: pmy:Pmen_0157 cytochrome c, class I YP_004472345.1 PFAM: DSBA-like thioredoxin domain; KEGG: pmy:Pmen_0158 DsbA oxidoreductase YP_004472346.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pmy:Pmen_0159 endonuclease/exonuclease/phosphatase YP_004472347.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pfl:PFL_0087 diguanylate cyclase, SMART: Diguanylate cyclase, predicted YP_004472348.1 PFAM: peptidase M23; KEGG: pmy:Pmen_0185 peptidase M23B YP_004472349.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: syd:Syncc9605_0661 exodeoxyribonuclease III YP_004472350.1 KEGG: pmy:Pmen_4405 hypothetical protein YP_004472351.1 KEGG: pmy:Pmen_4406 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; transporter-associated domain; SMART: Cystathionine beta-synthase, core YP_004472352.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; KEGG: pmy:Pmen_4407 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004472353.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: pmy:Pmen_4408 two component transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004472354.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate polyprenyl transferase; KEGG: pmy:Pmen_4409 4-hydroxybenzoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_004472355.1 HAMAP: Chorismate--pyruvate lyase; KEGG: pmy:Pmen_4410 chorismate lyase; PFAM: Chorismate--pyruvate lyase YP_004472356.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pmy:Pmen_0197 rubredoxin-type Fe(Cys)4 protein YP_004472357.1 KEGG: pfl:PFL_6103 rubredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004472358.1 KEGG: pmy:Pmen_4401 nucleoid protein HU alpha subunit; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein YP_004472359.1 KEGG: pmy:Pmen_4400 hypothetical protein YP_004472360.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pmy:Pmen_4398 signal transduction protein YP_004472361.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: psa:PST_0135 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004472362.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_4396 LysR family transcriptional regulator YP_004472363.1 TIGRFAM: TonB, C-terminal; KEGG: psp:PSPPH_0191 ferric siderophore transporter periplasmic energy transduction protein TonB YP_004472364.1 KEGG: avn:Avin_10620 TonB system transport protein ExbD; TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR YP_004472365.1 KEGG: pfl:PFL_6067 TonB system transport protein ExbB; TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel YP_004472366.1 PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; KEGG: pfl:PFL_6066 ActC family protein YP_004472367.1 KEGG: pen:PSEEN5448 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_004472368.1 SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: pmy:Pmen_4390 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT YP_004472369.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: pmy:Pmen_4389 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase, subunit omega/K/RPABC2 YP_004472370.1 KEGG: pmy:Pmen_4388 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel YP_004472371.1 KEGG: pmy:Pmen_4387 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732 YP_004472372.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: ribonuclease phosphorolytic, bacterial-type; HAMAP: ribonuclease phosphorolytic, bacterial-type; KEGG: pfl:PFL_6059 ribonuclease PH YP_004472373.1 KEGG: pag:PLES_57281 hypothetical protein YP_004472374.1 KEGG: bbr:BB4425 hypothetical protein YP_004472375.1 KEGG: pag:PLES_03821 hypothetical protein YP_004472376.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: pfl:PFL_5846 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004472377.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: nucleoside-triphosphatase; KEGG: pmy:Pmen_4158 deoxyribonucleotide triphosphate pyrophosphatase YP_004472378.1 KEGG: pmy:Pmen_4157 hypothetical protein YP_004472379.1 KEGG: pmy:Pmen_4156 methionine biosynthesis protein MetW; TIGRFAM: methionine biosynthesis MetW; PFAM: methionine biosynthesis MetW YP_004472380.1 PFAM: Alpha/beta hydrolase fold-1; TIGRFAM: Homoserine acetyltransferase; HAMAP: Homoserine acetyltransferase; KEGG: pmy:Pmen_4155 homoserine O-acetyltransferase YP_004472381.1 KEGG: pmy:Pmen_4154 GTPase (dynamin-related)-like protein YP_004472382.1 TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: protein of unknown function DUF167; KEGG: avn:Avin_03050 hypothetical protein; PFAM: protein of unknown function DUF167 YP_004472383.1 PFAM: Uncharacterised protein family Ycf19; KEGG: pag:PLES_03901 YGGT family protein YP_004472384.1 TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: ppf:Pput_4968 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004472385.1 KEGG: pmy:Pmen_4150 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: alanine racemase, N-terminal YP_004472386.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: pmy:Pmen_4149 twitching motility protein; SMART: ATPase, AAA+ type, core YP_004472387.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: pmy:Pmen_4148 twitching motility protein; SMART: ATPase, AAA+ type, core YP_004472388.1 KEGG: psa:PST_3963 leucyl-tRNA synthetase YP_004472389.1 KEGG: pmy:Pmen_4146 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004472390.1 KEGG: pmy:Pmen_4145 TM2 domain-containing protein YP_004472391.1 KEGG: pmy:Pmen_0396 dihydroorotase; TIGRFAM: Dihydroorotase; PFAM: Amidohydrolase 1 YP_004472392.1 PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: aspartate carbamoyltransferase, eukaryotic; HAMAP: aspartate carbamoyltransferase, eukaryotic; KEGG: pmy:Pmen_0397 aspartate carbamoyltransferase catalytic subunit YP_004472393.1 HAMAP: Bifunctional protein PyrR; KEGG: pmy:Pmen_0398 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004472394.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: pmy:Pmen_0399 Holliday junction resolvase-like protein; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004472395.1 KEGG: pmy:Pmen_0400 hypothetical protein; HAMAP: protein of unknown function DUF179; PFAM: protein of unknown function DUF179 YP_004472396.1 TIGRFAM: TonB, C-terminal; KEGG: pmy:Pmen_0401 TonB family protein YP_004472397.1 PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; TIGRFAM: glutathione synthetase, prokaryotic; HAMAP: glutathione synthetase, prokaryotic; KEGG: pmy:Pmen_0402 glutathione synthetase YP_004472398.1 KEGG: pmy:Pmen_0403 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472399.1 KEGG: pmy:Pmen_0404 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472400.1 KEGG: pmy:Pmen_0405 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004472401.1 KEGG: pmy:Pmen_0406 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004472402.1 PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: pmy:Pmen_0407 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type YP_004472403.1 KEGG: pae:PA0413 component of chemotactic signal transduction system; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein; SMART: Signal transduction response regulator, receiver domain; CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_004472404.1 PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; KEGG: pmy:Pmen_0409 CheB methylesterase YP_004472405.1 KEGG: pmy:Pmen_0410 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004472406.1 PFAM: Ferritin/Dps protein; KEGG: pag:PLES_52661 bacterioferritin YP_004472407.1 KEGG: pae:PA3575 hypothetical protein YP_004472408.1 KEGG: ppg:PputGB1_5035 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: ribosomal RNA small subunit methyltransferase E YP_004472409.1 TIGRFAM: adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: pmy:Pmen_0413 adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III YP_004472410.1 KEGG: psa:PST_3942 cytochrome b561 YP_004472411.1 HAMAP: protein yceI; PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: avn:Avin_03250 YceI-like protein; SMART: Lipid/polyisoprenoid-binding, YceI-like YP_004472412.1 KEGG: pmy:Pmen_0420 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004472413.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting; KEGG: mmw:Mmwyl1_2184 siderophore-interacting protein YP_004472414.1 PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; KEGG: pmy:Pmen_0422 hypothetical protein YP_004472415.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: psa:PST_3936 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_004472416.1 PFAM: adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: adenosylhomocysteinase; HAMAP: adenosylhomocysteinase; KEGG: pmy:Pmen_0449 S-adenosyl-L-homocysteine hydrolase YP_004472417.1 PFAM: Thioesterase superfamily; KEGG: pfs:PFLU5719 thioesterase YP_004472418.1 PFAM: NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; KEGG: pmy:Pmen_0453 NAD-dependent DNA ligase LigB; SMART: NAD-dependent DNA ligase, N-terminal YP_004472419.1 KEGG: psa:PST_3927 hypothetical protein YP_004472420.1 PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; KEGG: pmy:Pmen_0454 S-adenosylmethionine synthetase YP_004472421.1 KEGG: pmy:Pmen_0455 ArsR family transcriptional regulator; PFAM: methyltransferase type 11; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004472422.1 SMART: transketolase-like, pyrimidine-binding domain; TIGRFAM: transketolase, bacterial-like; KEGG: psa:PST_3920 transketolase; PFAM: transketolase, N-terminal; transketolase-like, pyrimidine-binding domain; transketolase, C-terminal YP_004472423.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; KEGG: pmy:Pmen_0459 D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004472424.1 HAMAP: phosphoglycerate kinase; KEGG: pfo:Pfl01_5265 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_004472425.1 KEGG: pag:PLES_05511 hypothetical protein YP_004472426.1 PFAM: protein of unknown function DUF2091, periplasmic; KEGG: pmy:Pmen_0461 hypothetical protein YP_004472427.1 TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: pmy:Pmen_0462 fructose-1,6-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II YP_004472428.1 KEGG: pmy:Pmen_0464 hypothetical protein YP_004472429.1 KEGG: pmy:Pmen_0465 glucose sorbosone dehydrogenase YP_004472430.1 PFAM: WLM; KEGG: pfl:PFL_5778 hypothetical protein YP_004472431.1 KEGG: pmy:Pmen_0468 GreA/GreB family elongation factor YP_004472432.1 TIGRFAM: Integral membrane protein, YccS/YhfK; Integral membrane protein, YccS; KEGG: pmy:Pmen_0470 YccS/YhfK family integral membrane protein YP_004472433.1 PFAM: glutathione S-transferase, N-terminal; glutathione S-transferase, C-terminal; KEGG: avn:Avin_05780 glutathione S-transferase-like protein YP_004472434.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-3; PAS fold; KEGG: pmy:Pmen_4309 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS YP_004472435.1 KEGG: pmy:Pmen_4308 fatty acid desaturase; manually curated; PFAM: Fatty acid desaturase, type 1 YP_004472436.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: pmy:Pmen_4307 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted YP_004472437.1 PFAM: Outer membrane porin, bacterial; KEGG: pmy:Pmen_1168 outer membrane porin YP_004472438.1 PFAM: peptidyl-arginine deiminase, Porphyromonas-type; TIGRFAM: agmatine deiminase; HAMAP: agmatine deiminase; KEGG: pmy:Pmen_0337 agmatine deiminase YP_004472439.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pfo:Pfl01_5409 TetR family transcriptional regulator YP_004472440.1 KEGG: pmy:Pmen_0341 L-glutamine synthetase; PFAM: glutamine synthetase, catalytic domain YP_004472441.1 KEGG: pmy:Pmen_0342 L-glutamine synthetase; PFAM: glutamine synthetase, catalytic domain YP_004472442.1 KEGG: pfo:Pfl01_5406 aminotransferase; PFAM: Aminotransferase class-III YP_004472443.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pag:PLES_02961 polyamine transport protein YP_004472444.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pmy:Pmen_0346 extracellular solute-binding protein YP_004472445.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: pmy:Pmen_0347 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-like; transport-associated OB, type 2 YP_004472446.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ppf:Pput_5085 binding-protein-dependent transport systems inner membrane component YP_004472447.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl01_5401 binding-protein dependent transport system inner membrane protein YP_004472448.1 KEGG: pap:PSPA7_6064 choline transporter; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004472449.1 PFAM: protein of unknown function DUF526; KEGG: pmy:Pmen_0258 hypothetical protein YP_004472450.1 KEGG: psa:PST_0502 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII YP_004472451.1 KEGG: psa:PST_0503 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004472452.1 KEGG: pmy:Pmen_0260 ammonium transporter; TIGRFAM: Ammonium transporter marine subtype; Ammonium transporter; PFAM: Ammonium transporter YP_004472453.1 KEGG: pmy:Pmen_0261 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047 YP_004472454.1 KEGG: pmy:Pmen_0262 hypothetical protein YP_004472455.1 KEGG: pmy:Pmen_0263 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004472456.1 TIGRFAM: Tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; KEGG: pmy:Pmen_0264 site-specific tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004472457.1 PFAM: protein of unknown function DUF484; KEGG: pmy:Pmen_0265 hypothetical protein YP_004472458.1 PFAM: diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; HAMAP: diaminopimelate epimerase; KEGG: psa:PST_0510 diaminopimelate epimerase YP_004472459.1 TIGRFAM: diaminopimelate decarboxylase; KEGG: pmy:Pmen_0267 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004472460.1 KEGG: pfo:Pfl01_5497 lipoprotein LppL YP_004472461.1 TIGRFAM: Frataxin-like; HAMAP: Frataxin-like; KEGG: psp:PSPPH_5010 frataxin-like protein; PFAM: Frataxin-like YP_004472462.1 PFAM: protein of unknown function DUF1289; KEGG: pmy:Pmen_0270 hypothetical protein YP_004472463.1 KEGG: pmy:Pmen_0271 nucleoside diphosphate kinase regulator YP_004472464.1 KEGG: pmy:Pmen_0273 adenylate cyclase; PFAM: adenylate cyclase, class-I YP_004472465.1 TIGRFAM: Conserved hypothetical protein CHP02647; KEGG: pfl:PFL_6007 hypothetical protein YP_004472466.1 KEGG: pap:PSPA7_6012 lipoprotein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004472467.1 KEGG: pmy:Pmen_0275 hypothetical protein YP_004472468.1 KEGG: avn:Avin_51350 transcriptional regulator protein DgoR; PFAM: transcription regulator IclR, N-terminal; transcription regulator IclR, C-terminal; SMART: transcription regulator IclR, N-terminal YP_004472469.1 KEGG: avn:Avin_51330 2-keto-3-deoxy-6-phosphogalactonate aldolase; PFAM: KDPG/KHG aldolase YP_004472470.1 KEGG: pha:PSHAb0247 hypothetical protein YP_004472471.1 PFAM: glutathione S-transferase, N-terminal; KEGG: ppf:Pput_0205 glutathione S-transferase domain-containing protein YP_004472472.1 KEGG: hch:HCH_05438 histone acetyltransferase HPA2-like acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004472473.1 KEGG: azo:azo0340 hypothetical protein YP_004472474.1 PFAM: Lyase 1, N-terminal; TIGRFAM: argininosuccinate lyase; HAMAP: argininosuccinate lyase; KEGG: ppg:PputGB1_0209 argininosuccinate lyase YP_004472475.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: pmy:Pmen_0278 sensory transduction protein kinase AlgZ YP_004472476.1 KEGG: psp:PSPPH_0069 alginate biosynthesis regulatory protein AlgR; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004472477.1 TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: pmy:Pmen_0280 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain YP_004472478.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: psa:PST_0525 uroporphyrinogen-III synthase YP_004472479.1 PFAM: HemX; KEGG: pmy:Pmen_0282 protein of unknown function DUF513, HemX YP_004472480.1 PFAM: HemY, N-terminal; KEGG: ppg:PputGB1_0214 HemY domain-containing protein YP_004472481.1 PFAM: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; KEGG: pmy:Pmen_0285 anti-RNA polymerase sigma 70 factor YP_004472482.1 KEGG: pfo:Pfl01_5480 CheA signal transduction histidine kinases YP_004472483.1 KEGG: pfo:Pfl01_0389 poly granule associated; TIGRFAM: poly granule associated; PFAM: poly granule associated YP_004472484.1 KEGG: pmy:Pmen_0526 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: poly granule associated; PFAM: poly granule associated YP_004472485.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_0527 TetR family transcriptional regulator YP_004472486.1 KEGG: pmy:Pmen_0529 poly(3-hydroxyalkanoate) depolymerase; TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: Alpha/beta hydrolase fold-1 YP_004472487.1 KEGG: pmy:Pmen_0530 poly(R)-hydroxyalkanoic acid synthase, class II; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1 YP_004472488.1 PFAM: gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: pmy:Pmen_0531 hypothetical protein YP_004472489.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: pmy:Pmen_0532 ATP-dependent protease ATP-binding subunit HslU; HAMAP: Heat shock protein HslU; PFAM: ATPase, AAA-2 YP_004472490.1 TIGRFAM: ATP-dependent protease, HslV subunit; HAMAP: ATP-dependent protease, HslV subunit; KEGG: pap:PSPA7_5790 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta YP_004472491.1 PFAM: Sporulation-related domain; KEGG: pmy:Pmen_0534 sporulation domain-containing protein YP_004472492.1 KEGG: psa:PST_0547 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase, class Ic; HAMAP: arginyl-tRNA synthetase, class Ic YP_004472493.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmy:Pmen_0536 primosome assembly protein PriA; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004472494.1 TIGRFAM: ribosomal protein L31; HAMAP: ribosomal protein L31; KEGG: avn:Avin_45340 ribosomal protein L31; PFAM: ribosomal protein L31 YP_004472495.1 KEGG: pmy:Pmen_0538 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004472496.1 PFAM: peptidase M48; KEGG: pmy:Pmen_0539 peptidase M48, Ste24p YP_004472497.1 KEGG: pmy:Pmen_0540 malate dehydrogenase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding YP_004472498.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: pmy:Pmen_0541 1A family penicillin-binding protein; PFAM: glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004472499.1 KEGG: pmy:Pmen_0542 type IV pilus assembly protein PilM; TIGRFAM: Type IV pilus assembly protein PilM; SMART: Cell division protein FtsA domain YP_004472500.1 PFAM: Fimbrial assembly; KEGG: pmy:Pmen_0543 fimbrial assembly family protein YP_004472501.1 KEGG: pap:PSPA7_5779 type 4 fimbrial biogenesis protein PilO YP_004472502.1 PFAM: Pilus assembly protein PilP; KEGG: pap:PSPA7_5778 type 4 fimbrial biogenesis protein PilP YP_004472503.1 TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: pau:PA14_66620 type 4 fimbrial biogenesis outer membrane protein PilQ precursor; SMART: Secretin/TonB, short N-terminal YP_004472504.1 HAMAP: Shikimate kinase; KEGG: pmy:Pmen_0547 shikimate kinase; PFAM: Shikimate kinase YP_004472505.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: pmy:Pmen_0548 3-dehydroquinate synthase YP_004472506.1 PFAM: Sporulation-related domain; KEGG: pmy:Pmen_0549 sporulation domain-containing protein YP_004472507.1 KEGG: pmy:Pmen_0550 glutamate synthase subunit alpha; PFAM: glutamate synthase, central-C; glutamine amidotransferase, class-II; glutamate synthase, central-N; glutamate synthase, alpha subunit, C-terminal YP_004472508.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit 2; KEGG: pmy:Pmen_0551 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004472509.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: pau:PA14_66550 uroporphyrinogen decarboxylase YP_004472510.1 PFAM: protein of unknown function DUF2141; KEGG: vap:Vapar_3951 hypothetical protein YP_004472511.1 KEGG: sdl:Sdel_2119 hypothetical protein YP_004472512.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; KEGG: azo:azo0292 3-oxoacyl-(acyl carrier protein) synthase III YP_004472513.1 KEGG: dar:Daro_2369 hypothetical protein YP_004472514.1 KEGG: dar:Daro_2370 hypothetical protein YP_004472515.1 KEGG: aap:NT05HA_1744 hypothetical protein YP_004472516.1 KEGG: hba:Hbal_2898 beta-ketoacyl synthase; PFAM: beta-ketoacyl synthase, C-terminal; SMART: polyketide synthase, beta-ketoacyl synthase domain YP_004472517.1 KEGG: aap:NT05HA_1742 acyl-carrier protein YP_004472518.1 PFAM: ABC transporter; KEGG: dar:Daro_2372 hypothetical protein YP_004472519.1 KEGG: azo:azo0289 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004472520.1 KEGG: rsc:RCFBP_21059 beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratase YP_004472521.1 KEGG: dps:DP3019 hypothetical protein YP_004472522.1 KEGG: dps:DP0609 hypothetical protein YP_004472523.1 KEGG: pfo:Pfl01_0421 hypothetical protein YP_004472524.1 KEGG: pfs:PFLU0419 hypothetical protein YP_004472525.1 PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; KEGG: pfo:Pfl01_0422 3-oxoacyl-(acyl carrier protein) synthase II; SMART: polyketide synthase, beta-ketoacyl synthase domain YP_004472526.1 SMART: polyketide synthase/Fatty acid synthase, KR; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase, KEGG: pen:PSEEN0346 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004472527.1 KEGG: pfl:PFL_0463 hypothetical protein YP_004472528.1 PFAM: beta-ketoacyl synthase, C-terminal; beta-ketoacyl synthase, N-terminal; KEGG: pfo:Pfl01_0425 3-oxoacyl-(acyl carrier protein) synthase I; SMART: polyketide synthase, beta-ketoacyl synthase domain YP_004472529.1 KEGG: pfl:PFL_0465 lipoprotein YP_004472530.1 PFAM: methyltransferase type 11; KEGG: pfo:Pfl01_0427 hypothetical protein YP_004472531.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN0351 oxidoreductase YP_004472532.1 PFAM: Cation/H+ exchanger; KEGG: pst:PSPTO_5103 hypothetical protein YP_004472533.1 KEGG: pfs:PFLU0427 hypothetical protein YP_004472534.1 KEGG: pen:PSEEN0354 hypothetical protein YP_004472535.1 KEGG: pfo:Pfl01_0432 thioesterase superfamily protein YP_004472536.1 KEGG: pfo:Pfl01_0433 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase YP_004472537.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: pfo:Pfl01_0434 hypothetical protein YP_004472538.1 PFAM: glycosyl transferase, family 2; KEGG: pfl:PFL_0474 glycosyl transferase, group 2 family protein YP_004472539.1 PFAM: AMP-dependent synthetase/ligase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: pfo:Pfl01_0436 AMP-dependent synthetase and ligase YP_004472540.1 KEGG: pen:PSEEN0360 hypothetical protein YP_004472541.1 PFAM: phosphopantetheine-binding; KEGG: pfl:PFL_0477 acyl carrier protein YP_004472542.1 KEGG: psp:PSPPH_0428 acyl carrier protein YP_004472543.1 KEGG: pfo:Pfl01_0440 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004472544.1 KEGG: pfo:Pfl01_0441 hypothetical protein YP_004472545.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pmy:Pmen_0553 cobyrinic acid a,c-diamide synthase YP_004472546.1 PFAM: UspA; KEGG: pmy:Pmen_0554 UspA domain-containing protein YP_004472547.1 KEGG: pmy:Pmen_0556 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004472548.1 KEGG: bid:Bind_0015 hypothetical protein YP_004472549.1 KEGG: ppw:PputW619_2676 choline/carnitine/betaine transporter; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004472550.1 KEGG: pmy:Pmen_1146 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03549; YcaO-like; PFAM: YcaO-like; Peroxiredoxin, OsmC-like protein YP_004472551.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: mlo:mll4859 hypothetical protein YP_004472552.1 KEGG: cko:CKO_04217 racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_004472553.1 PFAM: KAP P-loop; KEGG: swi:Swit_3481 kap P-loop domain-containing protein YP_004472554.1 KEGG: gbm:Gbem_2789 hypothetical protein YP_004472555.1 KEGG: ppu:PP_3984 ISPpu13, transposase Orf3 YP_004472556.1 KEGG: pmy:Pmen_0558 hypothetical protein; HAMAP: Uncharacterised protein family UPF0061; PFAM: Uncharacterised protein family UPF0061 YP_004472557.1 PFAM: Mechanosensitive ion channel MscS; KEGG: psb:Psyr_0501 potassium efflux protein KefA YP_004472558.1 KEGG: ppg:PputGB1_5116 potassium/proton antiporter; HAMAP: Cell volume regulation protein A; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; transporter-associated domain YP_004472559.1 TIGRFAM: Exopolyphosphatase; KEGG: pmy:Pmen_0301 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase YP_004472560.1 KEGG: pmy:Pmen_0308 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004472561.1 TIGRFAM: transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: ppw:PputW619_5037 transcription termination factor Rho; SMART: Cold shock protein; Rho termination factor, N-terminal; ATPase, AAA+ type, core YP_004472562.1 TIGRFAM: Carboxylyase-related; HAMAP: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; KEGG: pmy:Pmen_0310 3-octaprenyl-4hydroxybenzoate decarboxylase; PFAM: Carboxylyase-related YP_004472563.1 KEGG: pag:PLES_56301 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; ferredoxin YP_004472564.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: pmy:Pmen_0313 alcohol dehydrogenase; SMART: polyketide synthase, enoylreductase YP_004472565.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: pag:PLES_56271 flagellar basal body-associated protein FliL-like protein YP_004472566.1 PFAM: protein of unknown function DUF55; KEGG: pmy:Pmen_0319 hypothetical protein YP_004472567.1 KEGG: pmy:Pmen_0321 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004472568.1 PFAM: Cell division protein ZapA-like; KEGG: pmy:Pmen_0322 cell division protein ZapA YP_004472569.1 TIGRFAM: Conserved hypothetical protein CHP02449; KEGG: pmy:Pmen_0323 hypothetical protein YP_004472570.1 KEGG: pmy:Pmen_0324 hypothetical protein; HAMAP: Uncharacterised protein family UPF0149; PFAM: Uncharacterised protein family UPF0149 YP_004472571.1 PFAM: peptidase M24, structural domain; peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: pmy:Pmen_0325 peptidase M24 YP_004472572.1 KEGG: pmy:Pmen_0326 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004472573.1 KEGG: pfl:PFL_5966 hypothetical protein YP_004472574.1 KEGG: pmy:Pmen_0327 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004472575.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: psa:PST_4066 iron ABC transporter periplasmic iron-binding protein YP_004472576.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_5963 iron ABC transporter permease YP_004472577.1 PFAM: glycine cleavage T-protein, N-terminal; glycine cleavage T-protein, C-terminal barrel; TIGRFAM: glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: pmy:Pmen_0331 glycine cleavage system aminomethyltransferase T YP_004472578.1 TIGRFAM: glycine cleavage H-protein, subgroup; HAMAP: glycine cleavage H-protein; KEGG: pmy:Pmen_0332 glycine cleavage system protein H; PFAM: glycine cleavage H-protein YP_004472579.1 KEGG: psa:PST_0266 ribonucleotide reductase, alpha subunit; TIGRFAM: Conserved hypothetical protein CHP02448; PFAM: Conserved hypothetical protein CHP02448 YP_004472580.1 KEGG: pfl:PFL_5947 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004472581.1 KEGG: pmy:Pmen_4301 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core YP_004472582.1 PFAM: protein of unknown function DUF502; KEGG: pmy:Pmen_4298 hypothetical protein YP_004472583.1 PFAM: adenylate cyclase; KEGG: pmy:Pmen_0350 adenylate cyclase YP_004472584.1 KEGG: psa:PST_0272 phosphate transport regulator; TIGRFAM: protein of unknown function DUF47; PFAM: Putitive phosphate transport regulator YP_004472585.1 PFAM: phosphate transporter; KEGG: psa:PST_0273 phosphate transporter YP_004472586.1 PFAM: peptidase M20; peptidase M20, dimerisation; TIGRFAM: acetylornithine deacetylase (ArgE); HAMAP: acetylornithine deacetylase; KEGG: psb:Psyr_0253 acetylornithine deacetylase YP_004472587.1 TIGRFAM: Amino-acid N-acetyltransferase (ArgA); HAMAP: Amino-acid acetyltransferase; KEGG: pst:PSPTO_0324 N-acetylglutamate synthase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; aspartate/glutamate/uridylate kinase YP_004472588.1 KEGG: pst:PSPTO_2120 peptidase, M20/M25/M40 family; PFAM: peptidase M20; peptidase M20, dimerisation YP_004472589.1 TIGRFAM: tRNA (uracil-5-)-methyltransferase; HAMAP: tRNA (uracil-5-)-methyltransferase; KEGG: pau:PA14_62450 tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase YP_004472590.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: pau:PA14_62440 transporter YP_004472591.1 PFAM: Heat shock protein 70; KEGG: pfl:PFL_5232 chaperone protein HscC YP_004472592.1 KEGG: pfl:PFL_5233 DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004472593.1 KEGG: pfl:PFL_5233 DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004472594.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppw:PputW619_0786 major facilitator transporter YP_004472595.1 KEGG: ppf:Pput_0610 hypothetical protein YP_004472596.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; KEGG: bpy:Bphyt_5841 PAS/PAC sensor hybrid histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; Signal transduction response regulator, receiver domain YP_004472597.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: psa:PST_4184 sensory box histidine kinase/response regulator; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004472598.1 KEGG: psa:PST_4183 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472599.1 KEGG: ppw:PputW619_1796 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; PAS fold-2; GAF; Phytochrome, central region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004472600.1 PFAM: SdiA-regulated; KEGG: psa:PST_0982 hypothetical protein YP_004472601.1 KEGG: pag:PLES_51781 lipoprotein YP_004472602.1 KEGG: psb:Psyr_0640 lipoprotein YP_004472603.1 PFAM: methyltransferase type 11; KEGG: pmy:Pmen_0740 methyltransferase type 11 YP_004472604.1 KEGG: pfl:PFL_0682 hypothetical protein YP_004472605.1 PFAM: MaoC-like dehydratase; KEGG: pau:PA14_63290 hypothetical protein YP_004472606.1 KEGG: pmy:Pmen_0743 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472607.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_0744 3-ketoacyl-(acyl-carrier-protein) reductase; SMART: polyketide synthase/Fatty acid synthase, KR YP_004472608.1 TIGRFAM: Thiolase; KEGG: pmy:Pmen_0745 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal YP_004472609.1 TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; methylguanine DNA methyltransferase, ribonuclease-like; KEGG: psa:PST_3621 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472610.1 KEGG: pmy:Pmen_0811 protein of unknown function RIO1; PFAM: RIO-like kinase; SMART: RIO kinase YP_004472611.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: psa:PST_1955 nitrite reductase [NAD(P)H] large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Nitrite/sulphite reductase 4Fe-4S domain YP_004472612.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; KEGG: psa:PST_1954 nitrite reductase [NAD(P)H], small subunit YP_004472613.1 PFAM: formate/nitrite transporter; KEGG: psa:PST_1953 formate/nitrate transporter YP_004472614.1 KEGG: dar:Daro_0820 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; Sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-like; serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain YP_004472615.1 PFAM: Integral membrane protein TerC; KEGG: mpo:Mpop_1673 integral membrane protein TerC YP_004472616.1 KEGG: psa:PST_0890 F0F1-type ATP synthase subunit beta YP_004472617.1 KEGG: pmy:Pmen_3218 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004472618.1 KEGG: pfl:PFL_2694 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472619.1 KEGG: pfl:PFL_2693 hypothetical protein YP_004472620.1 KEGG: pfl:PFL_2692 hypothetical protein YP_004472621.1 KEGG: pfl:PFL_2691 hypothetical protein YP_004472622.1 PFAM: protein of unknown function DUF1176; KEGG: pwa:Pecwa_2335 protein of unknown function DUF1176 YP_004472623.1 KEGG: psa:PST_2731 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004472624.1 KEGG: pfo:Pfl01_2513 nitrite and sulphite reductase 4Fe-4S region; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_004472625.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: pfl:PFL_2836 hypothetical protein YP_004472626.1 KEGG: sml:Smlt4400 ubiquinol oxidase polypeptide I; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004472627.1 KEGG: psa:PST_0147 TonB-dependent ferric siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004472628.1 KEGG: bur:Bcep18194_B3091 alpha/beta hydrolase; PFAM: Alpha/beta hydrolase fold-1 YP_004472629.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_5204 LysR family transcriptional regulator YP_004472630.1 KEGG: pst:PSPTO_1585 hypothetical protein YP_004472631.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; PAS fold-4; Signal transduction response regulator, receiver domain; KEGG: mpo:Mpop_1131 PAS/PAC sensor hybrid histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; Signal transduction response regulator, receiver domain YP_004472632.1 KEGG: pcs:Pc16g00810 hypothetical protein YP_004472633.1 KEGG: mpi:Mpet_2760 hypothetical protein YP_004472634.1 KEGG: ebi:EbC_28870 gluconate 2-dehydrogenase (acceptor); PFAM: Cytochrome c, class I YP_004472635.1 KEGG: ebi:EbC_28860 gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase, C-terminal; FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase, N-terminal YP_004472636.1 KEGG: ebi:EbC_28850 gluconate 2-dehydrogenase (acceptor) YP_004472637.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-4; KEGG: psb:Psyr_2596 PAS; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif YP_004472638.1 PFAM: protein of unknown function DUF1654; KEGG: pen:PSEEN1950 hypothetical protein YP_004472639.1 KEGG: mdi:METDI0924 sensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; PAC motif YP_004472640.1 KEGG: bxe:Bxe_A1808 hypothetical protein YP_004472641.1 KEGG: pva:Pvag_2098 NADH dehydrogenase I chain J YP_004472642.1 KEGG: pfl:PFL_0339 hypothetical protein YP_004472643.1 KEGG: pmy:Pmen_4272 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004472644.1 KEGG: pmy:Pmen_4271 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004472645.1 KEGG: nve:NEMVE_v1g223467 hypothetical protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004472646.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_4269 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004472647.1 KEGG: pfl:PFL_3252 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472648.1 KEGG: pfl:PFL_3251 sensor histidine kinase/response regulator; PFAM: ATPase-like, ATP-binding domain; CHASE3; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain YP_004472649.1 KEGG: psb:Psyr_2446 MCP methyltransferase, CheR-type:MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; SMART: MCP methyltransferase, CheR-type YP_004472650.1 KEGG: pfl:PFL_3249 methylesterase, CheB-like; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YP_004472651.1 KEGG: pfs:PFLU3020 two-component system response regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004472652.1 KEGG: pst:PSPTO_2716 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004472653.1 TIGRFAM: Anthranilate synthase component I, PabB-like; KEGG: pmy:Pmen_3997 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004472654.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: pst:PSPTO_5381 biotin carboxylase/biotin carboxyl carrier protein; SMART: Biotin carboxylase, C-terminal YP_004472655.1 SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: Allophanate hydrolase subunit 2; KEGG: pst:PSPTO_5380 allophanate hydrolase, PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1 YP_004472656.1 KEGG: pst:PSPTO_5379 hypothetical protein; HAMAP: UPF0317 protein; PFAM: protein of unknown function DUF1445 YP_004472657.1 KEGG: pst:PSPTO_5378 LamB/YcsF family protein; HAMAP: Uncharacterised protein family UPF0271, LamB/YcsF; PFAM: Uncharacterised protein family UPF0271, LamB/YcsF YP_004472658.1 KEGG: psb:Psyr_0496 hypothetical protein YP_004472659.1 KEGG: psb:Psyr_0495 transcriptional regulator GntR; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004472660.1 KEGG: pmy:Pmen_3988 hypothetical protein YP_004472661.1 KEGG: pmy:Pmen_3983 phage repressor; PFAM: peptidase S24/S26A/S26B, conserved region; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004472662.1 KEGG: psp:PSPPH_1888 hypothetical protein YP_004472663.1 KEGG: bte:BTH_II1345 hypothetical protein YP_004472664.1 PFAM: glycoside hydrolase, family 5; KEGG: aav:Aave_2924 glycoside hydrolase YP_004472665.1 KEGG: ppu:PP_3854 endolysin; PFAM: glycoside hydrolase, family 24 YP_004472666.1 KEGG: pfo:Pfl01_1173 bacteriophage signal peptide protein YP_004472667.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ilo:IL1815 acetyltransferase YP_004472668.1 KEGG: rlt:Rleg2_3588 hypothetical protein YP_004472669.1 manually curated; KEGG: ppu:PP_0419 hypothetical protein YP_004472670.1 TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: pmy:Pmen_3946 anthranilate synthase component II; PFAM: glutamine amidotransferase class-I, C-terminal YP_004472671.1 PFAM: glycosyl transferase, family 3; glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: pmy:Pmen_3945 anthranilate phosphoribosyltransferase YP_004472672.1 KEGG: psb:Psyr_4579 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004472673.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: pmy:Pmen_0778 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal YP_004472674.1 PFAM: protein of unknown function DUF1631; KEGG: pmy:Pmen_0779 hypothetical protein YP_004472675.1 KEGG: psa:PST_3626 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004472676.1 KEGG: pmy:Pmen_0781 signaling modulator of AmpD, AmpE YP_004472677.1 KEGG: pmy:Pmen_0783 TatD family hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004472678.1 PFAM: AsmA; KEGG: pmy:Pmen_0784 AsmA family protein YP_004472679.1 TIGRFAM: D-fructose-responsive transcription factor; PFAM: substrate-binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; KEGG: pmy:Pmen_0785 DNA-binding transcriptional regulator FruR; SMART: HTH transcriptional regulator, LacI YP_004472680.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; phosphotransferase system, phosphocarrier HPr protein; KEGG: avn:Avin_12190 fructose-specific multiphosphoryl transfer protein; PFAM: PEP-utilising enzyme; phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; phosphotransferase system, phosphocarrier HPr protein; phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain YP_004472681.1 TIGRFAM: 1-phosphofructokinase; Tagatose/fructose phosphokinase; KEGG: avn:Avin_12200 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase YP_004472682.1 KEGG: pmy:Pmen_0788 PTS system, fructose subfamily, IIC subunit; TIGRFAM: phosphotransferase system, fructose IIC component; phosphotransferase system, fructose-specific IIB subunit; PFAM: phosphotransferase system, EIIC YP_004472683.1 KEGG: pmy:Pmen_3943 cAMP-regulatory protein; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004472684.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: psb:Psyr_4576 OsmC-like protein YP_004472685.1 HAMAP: 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; KEGG: pmy:Pmen_3941 ubiquinone biosynthesis protein COQ7-like protein YP_004472686.1 KEGG: pmy:Pmen_3939 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004472687.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pap:PSPA7_0799 short chain dehydrogenase/reductase oxidoreductase YP_004472688.1 PFAM: protein of unknown function DUF805; KEGG: pag:PLES_06381 hypothetical protein YP_004472689.1 KEGG: psb:Psyr_4570 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family UPF0093 YP_004472690.1 KEGG: pmy:Pmen_3932 hypothetical protein YP_004472691.1 PFAM: protein of unknown function DUF583; KEGG: pmy:Pmen_3931 hypothetical protein YP_004472692.1 TIGRFAM: FeS cluster insertion; HAMAP: FeS cluster insertion ErpA; KEGG: psa:PST_0755 iron-sulfur cluster insertion protein ErpA; PFAM: FeS cluster biogenesis YP_004472693.1 KEGG: ppf:Pput_0467 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004472694.1 PFAM: peptidase M23; Opacity-associated protein A; KEGG: pmy:Pmen_3928 peptidase M23B YP_004472695.1 TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; HAMAP: Tyrosyl-tRNA synthetase, class Ib; KEGG: pmy:Pmen_3927 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 YP_004472696.1 TIGRFAM: Type III pantothenate kinase; HAMAP: Type III pantothenate kinase; KEGG: pen:PSEEN0472 pantothenate kinase; PFAM: Type III pantothenate kinase YP_004472697.1 PFAM: Sporulation-related domain; KEGG: pmy:Pmen_3924 sporulation domain-containing protein YP_004472698.1 KEGG: psa:PST_0782 elongation factor Tu; TIGRFAM: translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFTu/EF1A, C-terminal YP_004472699.1 KEGG: pag:PLES_06521 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: protein SecE/Sec61-gamma protein YP_004472700.1 SMART: transcription antitermination protein, NusG, N-terminal; KOW; manually curated; KEGG: pmy:Pmen_3921 transcription antitermination protein NusG; TIGRFAM: transcription antitermination protein, NusG; PFAM: transcription antitermination protein, NusG, N-terminal; KOW YP_004472701.1 TIGRFAM: ribosomal protein L11, bacterial-type; PFAM: ribosomal protein L11, N-terminal domain; ribosomal protein L11, C-terminal domain; KEGG: pmy:Pmen_3920 50S ribosomal protein L11; SMART: ribosomal protein L11 YP_004472702.1 KEGG: pmy:Pmen_3919 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1, bacterial-type; PFAM: ribosomal protein L1 YP_004472703.1 KEGG: pmy:Pmen_3918 50S ribosomal protein L10; HAMAP: ribosomal protein L10; PFAM: ribosomal protein L10/acidic P0 YP_004472704.1 TIGRFAM: ribosomal protein L7/L12; HAMAP: ribosomal protein L7/L12; KEGG: psa:PST_0776 50S ribosomal protein L7 / L12; PFAM: ribosomal protein L7/L12, C-terminal YP_004472705.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; KEGG: pmy:Pmen_3916 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004472706.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: pmy:Pmen_3915 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004472707.1 KEGG: pfo:Pfl01_5084 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacteria; PFAM: ribosomal protein S12/S23 YP_004472708.1 KEGG: pfs:PFLU5531 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7, bacterial-type; PFAM: ribosomal protein S7 YP_004472709.1 TIGRFAM: translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; KEGG: pfl:PFL_5585 elongation factor G; SMART: translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal YP_004472710.1 KEGG: psa:PST_0782 elongation factor Tu; TIGRFAM: translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFTu/EF1A, C-terminal YP_004472711.1 TIGRFAM: ribosomal protein S10 subgroup; HAMAP: ribosomal protein S10 subgroup; KEGG: psa:PST_0783 30S ribosomal protein S10; PFAM: ribosomal protein S10 YP_004472712.1 KEGG: pfs:PFLU5527 50S ribosomal protein L3; TIGRFAM: ribosomal protein L3, bacterial/organelle-type; PFAM: ribosomal protein L3 YP_004472713.1 PFAM: ribosomal protein L4/L1e; KEGG: psa:PST_0785 50S ribosomal protein L4 YP_004472714.1 PFAM: ribosomal protein L25/L23; KEGG: pmy:Pmen_3907 50S ribosomal protein L23 YP_004472715.1 KEGG: ppw:PputW619_4746 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2, bacterial-type; PFAM: ribosomal protein L2, C-terminal; ribosomal proteins L2, RNA binding domain YP_004472716.1 KEGG: pfl:PFL_5578 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial-type; PFAM: ribosomal protein S19/S15 YP_004472717.1 KEGG: pmy:Pmen_3904 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22, bacterial-type; PFAM: ribosomal protein L22/L17 YP_004472718.1 TIGRFAM: ribosomal protein S3, bacterial; PFAM: ribosomal protein S3, C-terminal; ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: pmy:Pmen_3903 30S ribosomal protein S3; SMART: K Homology YP_004472719.1 KEGG: pmy:Pmen_3902 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L10e/L16 YP_004472720.1 KEGG: pen:PSEEN0498 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_004472721.1 KEGG: pmy:Pmen_3900 30S ribosomal protein S17; TIGRFAM: ribosomal protein S17, bacterial-type; PFAM: ribosomal protein S17 YP_004472722.1 KEGG: pfs:PFLU5517 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14, bacterial-type; PFAM: ribosomal protein L14b/L23e YP_004472723.1 KEGG: pmy:Pmen_3898 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; SMART: KOW YP_004472724.1 PFAM: ribosomal protein L5; KEGG: pmy:Pmen_3897 50S ribosomal protein L5 YP_004472725.1 KEGG: pmy:Pmen_3896 30S ribosomal protein S14; HAMAP: ribosomal protein S14, bacterial/plastid; PFAM: ribosomal protein S14 YP_004472726.1 PFAM: ribosomal protein S8; KEGG: pmy:Pmen_3895 30S ribosomal protein S8 YP_004472727.1 KEGG: pmy:Pmen_3894 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial-type; PFAM: ribosomal protein L6, alpha-beta domain YP_004472728.1 KEGG: pmy:Pmen_3893 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18, bacterial; PFAM: ribosomal protein L18/L5 YP_004472729.1 KEGG: pfl:PFL_5565 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5, bacterial-type; PFAM: ribosomal protein S5, C-terminal; ribosomal protein S5, N-terminal YP_004472730.1 KEGG: pmy:Pmen_3891 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30, bacterial-type; PFAM: ribosomal protein L30, ferredoxin-like fold domain YP_004472731.1 TIGRFAM: ribosomal protein L15, bacterial-type; KEGG: pfl:PFL_5563 50S ribosomal protein L15 YP_004472732.1 KEGG: pmy:Pmen_3889 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein YP_004472733.1 PFAM: ribosomal protein L36; manually curated; TIGRFAM: ribosomal protein L36; KEGG: pmy:Pmen_3888 50S ribosomal protein L36; HAMAP: ribosomal protein L36 YP_004472734.1 KEGG: pmy:Pmen_3887 30S ribosomal protein S13; TIGRFAM: ribosomal protein S13, bacterial-type; PFAM: ribosomal protein S13 YP_004472735.1 KEGG: pfs:PFLU5504 30S ribosomal protein S11; TIGRFAM: ribosomal protein S11, bacterial-type; PFAM: ribosomal protein S11 YP_004472736.1 TIGRFAM: ribosomal protein S4, bacterial-type; PFAM: ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: pmy:Pmen_3885 30S ribosomal protein S4; SMART: RNA-binding S4 YP_004472737.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: pfl:PFL_5558 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal YP_004472738.1 TIGRFAM: ribosomal protein L17; HAMAP: ribosomal protein L17; KEGG: pmy:Pmen_3883 50S ribosomal protein L17; PFAM: ribosomal protein L17 YP_004472739.1 TIGRFAM: Catalase-peroxidase haem; HAMAP: Catalase-peroxidase haem; KEGG: aav:Aave_3132 catalase/peroxidase HPI; PFAM: Haem peroxidase, plant/fungal/bacterial YP_004472740.1 KEGG: pmy:Pmen_3880 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004472741.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: Excinuclease ABC, A subunit; KEGG: pen:PSEEN0519 excinuclease ABC subunit A; PFAM: ABC transporter-like YP_004472742.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_3877 major facilitator transporter YP_004472743.1 KEGG: pmy:Pmen_3876 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004472744.1 KEGG: psa:PST_3000 hypothetical protein YP_004472745.1 PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pmy:Pmen_3875 dTDP-4-dehydrorhamnose reductase YP_004472746.1 KEGG: pmy:Pmen_3874 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004472747.1 PFAM: Outer membrane protein, OmpW; KEGG: pfo:Pfl01_5029 OmpW YP_004472748.1 KEGG: pmy:Pmen_3866 hypothetical protein YP_004472749.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: pag:PLES_09121 permease YP_004472750.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_3864 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004472751.1 KEGG: pfo:Pfl01_5025 hypothetical protein YP_004472752.1 KEGG: pmy:Pmen_3862 hypothetical protein YP_004472753.1 KEGG: pmy:Pmen_3861 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004472754.1 PFAM: ribosomal L11 methyltransferase, PrmA; KEGG: psa:PST_0833 hypothetical protein YP_004472755.1 KEGG: ppu:PP_0512 hypothetical protein YP_004472756.1 TIGRFAM: ribonucleotide reductase regulator NrdR-like; HAMAP: ribonucleotide reductase regulator NrdR-like; KEGG: psb:Psyr_4463 transcriptional regulator NrdR; PFAM: ATP-cone YP_004472757.1 TIGRFAM: riboflavin biosynthesis protein RibD; riboflavin-specific deaminase, C-terminal; KEGG: pmy:Pmen_3857 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_004472758.1 HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: pfl:PFL_4508 riboflavin synthase subunit beta; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004472759.1 TIGRFAM: Lumazine-binding protein; KEGG: pmy:Pmen_3856 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_004472760.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; KEGG: pfo:Pfl01_5017 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA YP_004472761.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: pfo:Pfl01_5016 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004472762.1 TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: pmy:Pmen_3853 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44 YP_004472763.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: pfs:PFLU5468 thiamine monophosphate kinase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal YP_004472764.1 KEGG: pmy:Pmen_3851 phosphatidylglycerophosphatase; PFAM: phosphatidylglycerophosphatase A YP_004472765.1 KEGG: pmy:Pmen_3850 hypothetical protein YP_004472766.1 KEGG: pmy:Pmen_3849 aspartyl protease-like protein YP_004472767.1 PFAM: Cation/H+ exchanger; KEGG: pap:PSPA7_1220 Na+/H+ antiporter NhaP YP_004472768.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_4279 glycine betaine/carnitine/choline ABC transporter permease YP_004472769.1 PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: pfo:Pfl01_0805 glycine/betaine ABC transporter substrate-binding protein YP_004472770.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: psb:Psyr_4250 binding-protein dependent transport system inner membrane protein YP_004472771.1 SMART: ATPase, AAA+ type, core; Cystathionine beta-synthase, core; TIGRFAM: glycine betaine/L-proline transport ATP-binding subunit; KEGG: ppu:PP_0868 glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core YP_004472772.1 PFAM: Domain of unknown function DUF861, cupin-3; KEGG: pmy:Pmen_0236 protein of unknown function DUF861, cupin_3 YP_004472773.1 PFAM: Aldehyde dehydrogenase domain; KEGG: pap:PSPA7_6087 aldehyde dehydrogenase YP_004472774.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_0238 major facilitator transporter YP_004472775.1 KEGG: pfo:Pfl01_5532 phospholipase D/transphosphatidylase; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004472776.1 PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: pmy:Pmen_0240 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004472777.1 PFAM: protein of unknown function DUF1127; KEGG: pfo:Pfl01_5530 hypothetical protein YP_004472778.1 PFAM: FAD dependent oxidoreductase; KEGG: pmy:Pmen_0242 FAD dependent oxidoreductase YP_004472779.1 PFAM: Uncharacterised protein family UPF0153; KEGG: pmy:Pmen_0243 hypothetical protein YP_004472780.1 KEGG: pmy:Pmen_0244 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004472781.1 HAMAP: D-amino acid dehydrogenase small subunit, DadA; KEGG: psb:Psyr_0235 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase YP_004472782.1 PFAM: Endoribonuclease L-PSP; KEGG: avn:Avin_47970 endoribonuclease L-PSP family protein YP_004472783.1 PFAM: alanine racemase, N-terminal; alanine racemase, C-terminal; TIGRFAM: alanine racemase; HAMAP: alanine racemase; KEGG: pmy:Pmen_0247 alanine racemase YP_004472784.1 KEGG: pmy:Pmen_0248 XRE family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004472785.1 KEGG: pmy:Pmen_0249 cytochrome c5-like protein YP_004472786.1 KEGG: pmy:Pmen_0250 acetyl-CoA hydrolase-like protein YP_004472787.1 PFAM: phosphoribosyltransferase; TIGRFAM: xanthine phosphoribosyltransferase; HAMAP: xanthine phosphoribosyltransferase; KEGG: pap:PSPA7_6072 xanthine phosphoribosyltransferase YP_004472788.1 KEGG: pmy:Pmen_0252 hypothetical protein YP_004472789.1 KEGG: pmy:Pmen_0253 ATP-dependent DNA helicase Rep; TIGRFAM: DNA helicase, ATP-dependent, RepA type; PFAM: DNA helicase, UvrD/REP type YP_004472790.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: pmy:Pmen_0254 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004472791.1 KEGG: pmy:Pmen_0255 multidrug efflux protein NorA; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004472792.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pap:PSPA7_6066 LysR family transcriptional regulator YP_004472793.1 KEGG: pfo:Pfl01_5515 chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; PAS fold-4; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004472794.1 KEGG: psp:PSPPH_4273 ornithine/DAP/arginine decarboxylase decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004472795.1 KEGG: pmy:Pmen_1200 ATP-dependent protease-like protein YP_004472796.1 KEGG: pmy:Pmen_1201 hypothetical protein YP_004472797.1 TIGRFAM: Uncharacterised protein family UPF0114, bacteria; HAMAP: Uncharacterised protein family UPF0114, gammaproteobacteria; KEGG: pfs:PFLU5318 hypothetical protein; PFAM: Uncharacterised protein family UPF0114 YP_004472798.1 KEGG: psa:PST_0951 hypothetical protein YP_004472799.1 KEGG: pfl:PFL_5333 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal YP_004472800.1 KEGG: pmy:Pmen_1207 hypothetical protein YP_004472801.1 KEGG: pmy:Pmen_3683 polyprenyl synthetase; PFAM: polyprenyl synthetase YP_004472802.1 TIGRFAM: ribosomal protein L21; HAMAP: ribosomal protein L21; KEGG: pmy:Pmen_3682 50S ribosomal protein L21; PFAM: ribosomal protein L21 YP_004472803.1 TIGRFAM: ribosomal protein L27; HAMAP: ribosomal protein L27; KEGG: pfs:PFLU5170 50S ribosomal protein L27; PFAM: ribosomal protein L27 YP_004472804.1 KEGG: pmy:Pmen_3680 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004472805.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; KEGG: pmy:Pmen_3679 gamma-glutamyl kinase; HAMAP: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004472806.1 PFAM: Uncharacterised protein family CreA; KEGG: pau:PA14_60410 hypothetical protein YP_004472807.1 KEGG: psa:PST_1889 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004472808.1 TIGRFAM: ribosomal protein S20; HAMAP: ribosomal protein S20; KEGG: pen:PSEEN4695 30S ribosomal protein S20; PFAM: ribosomal protein S20 YP_004472809.1 KEGG: avn:Avin_11760 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004472810.1 SMART: riboflavin kinase; TIGRFAM: riboflavin kinase/FAD synthetase; KEGG: pmy:Pmen_0952 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; riboflavin kinase YP_004472811.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: pmy:Pmen_0953 isoleucyl-tRNA synthetase YP_004472812.1 PFAM: peptidase A8, signal peptidase II; TIGRFAM: peptidase A8, signal peptidase II; HAMAP: peptidase A8, signal peptidase II; KEGG: psa:PST_0965 lipoprotein signal peptidase YP_004472813.1 KEGG: pmy:Pmen_0955 peptidylprolyl isomerase, FKBP-type; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004472814.1 KEGG: psp:PSPPH_A0070 hypothetical protein YP_004472815.1 PFAM: Plasmid stabilisation system; KEGG: psp:PSPPH_A0071 addiction module antitoxin YP_004472816.1 PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: pmy:Pmen_0956 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_004472817.1 PFAM: Dienelactone hydrolase; KEGG: mmi:MMAR_1955 alanine rich hydrolase YP_004472818.1 HAMAP: Inorganic pyrophosphatase; KEGG: pag:PLES_09451 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_004472819.1 PFAM: protein of unknown function DUF980; KEGG: pen:PSEEN0627 zinc-dependent peptidase YP_004472820.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_3827 GCN5-related N-acetyltransferase YP_004472821.1 TIGRFAM: Murein peptide ligase; KEGG: pmy:Pmen_3826 UDP-N-acetylmuramate; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal YP_004472822.1 KEGG: pmy:Pmen_3825 aromatic acid decarboxylase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein YP_004472823.1 PFAM: protein of unknown function DUF1375; KEGG: pfl:PFL_5465 hypothetical protein YP_004472824.1 KEGG: bpd:BURPS668_A1937 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004472825.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: psa:PST_3607 hypothetical protein YP_004472826.1 PFAM: transcription regulator YcdC, C-terminal; transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_3699 TetR family transcriptional regulator YP_004472827.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: psa:PST_0299 oxidoreductase YP_004472828.1 KEGG: mea:Mex_1p4921 hypothetical protein YP_004472829.1 KEGG: mau:Micau_4378 hypothetical protein YP_004472830.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_3696 LysR family transcriptional regulator YP_004472831.1 KEGG: pmy:Pmen_3695 beta alanine--pyruvate transaminase; PFAM: Aminotransferase class-III YP_004472832.1 PFAM: Cupin 2, conserved barrel; KEGG: pag:PLES_01321 hypothetical protein YP_004472833.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; KEGG: pfl:PFL_0734 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004472834.1 KEGG: bch:Bcen2424_0454 phage protein YP_004472835.1 PFAM: Domain of unknown function DUF88; KEGG: pmy:Pmen_3691 hypothetical protein YP_004472836.1 KEGG: vap:Vapar_1754 beta-lactamase domain protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004472837.1 PFAM: Extracellular ligand-binding receptor; KEGG: pag:PLES_52991 binding protein component of ABC transporter YP_004472838.1 PFAM: ABC transporter permease; KEGG: psb:Psyr_0598 inner-membrane translocator YP_004472839.1 PFAM: ABC transporter permease; KEGG: pfl:PFL_0600 high-affinity branched-chain amino acid ABC transporter permease BraE YP_004472840.1 PFAM: ABC transporter-like; KEGG: pag:PLES_52961 ATP-binding component of ABC transporter; SMART: ATPase, AAA+ type, core YP_004472841.1 PFAM: ABC transporter-like; KEGG: ppf:Pput_4741 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004472842.1 KEGG: psb:Psyr_0591 blue (type1) copper domain-containing protein; TIGRFAM: Azurin, proteobacteria; PFAM: Blue (type 1) copper domain YP_004472843.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nve:NEMVE_v1g224521 hypothetical protein YP_004472844.1 PFAM: protein of unknown function DUF1043; KEGG: pmy:Pmen_0892 hypothetical protein YP_004472845.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_0893 alpha/beta fold family hydrolase-like protein YP_004472846.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: pmy:Pmen_0894 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004472847.1 PFAM: ATPase, AFG1-like; KEGG: psa:PST_3629 ATPase YP_004472848.1 KEGG: pmy:Pmen_0897 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472849.1 HAMAP: Endonuclease V; KEGG: pmy:Pmen_0899 endonuclease V; PFAM: Endonuclease V YP_004472850.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: pmy:Pmen_0900 aldo/keto reductase YP_004472851.1 KEGG: pfl:PFL_5082 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial-type; PFAM: ribosomal protein L13 YP_004472852.1 PFAM: ribosomal protein S9; KEGG: pfo:Pfl01_4693 30S ribosomal protein S9 YP_004472853.1 TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: pfl:PFL_5080 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain YP_004472854.1 PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: pfl:PFL_5079 ubiquinol-cytochrome c reductase, cytochrome b YP_004472855.1 KEGG: pag:PLES_48081 cytochrome c1 precursor YP_004472856.1 PFAM: glutathione S-transferase, N-terminal; glutathione S-transferase, C-terminal; KEGG: psp:PSPPH_4124 stringent starvation protein A YP_004472857.1 PFAM: Stringent starvation protein B; KEGG: pst:PSPTO_4423 stringent starvation protein B YP_004472858.1 KEGG: pmy:Pmen_3603 transport-associated; PFAM: transport-associated; SMART: transport-associated and nodulation domain, bacteria YP_004472859.1 PFAM: CsbD-like; KEGG: pmy:Pmen_3602 CsbD family protein YP_004472860.1 KEGG: dze:Dd1591_4052 hypothetical protein YP_004472861.1 KEGG: pmy:Pmen_3749 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004472862.1 KEGG: pmy:Pmen_3748 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004472863.1 TIGRFAM: AMP nucleosidase; KEGG: pmy:Pmen_3750 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; nucleoside phosphorylase domain YP_004472864.1 KEGG: tai:Taci_0945 hypothetical protein YP_004472865.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: psa:PST_0152 hypothetical protein; SMART: Metal-dependent phosphohydrolase, HD domain YP_004472866.1 PFAM: Major facilitator superfamily MFS-1; KEGG: aav:Aave_2158 major facilitator superfamily transporter YP_004472867.1 KEGG: pfs:PFLU4096 gamma-glutamyltranspeptidase; PFAM: gamma-glutamyltranspeptidase YP_004472868.1 PFAM: ABC transporter-like; KEGG: pfs:PFLU4097 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004472869.1 KEGG: pfs:PFLU4098 ABC transporter permease; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004472870.1 KEGG: pfs:PFLU4099 ABC transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004472871.1 KEGG: pfs:PFLU4100 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004472872.1 PFAM: Amidase; KEGG: ddd:Dda3937_00280 amidase YP_004472873.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfs:PFLU3263 efflux protein YP_004472874.1 KEGG: pfs:PFLU3264 hypothetical protein YP_004472875.1 KEGG: pfs:PFLU3265 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472876.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bpt:Bpet1436 transmembrane efflux protein of the MFS type YP_004472877.1 KEGG: smt:Smal_1394 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004472878.1 KEGG: smt:Smal_1393 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004472879.1 KEGG: mea:Mex_1p2759 short chain alcohol dehydrogenase YP_004472880.1 PFAM: protein of unknown function DUF633; KEGG: pfl:PFL_2370 hypothetical protein YP_004472881.1 KEGG: pde:Pden_1344 ABC transporter related; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal; SMART: ATPase, AAA+ type, core YP_004472882.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: eta:ETA_13930 ABC transporter permease YP_004472883.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_1342 binding-protein-dependent transport systems inner membrane component YP_004472884.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: epy:EpC_14720 extracellular solute-binding protein, family 5 YP_004472885.1 KEGG: pfs:PFLU4548 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004472886.1 KEGG: maq:Maqu_0024 hypothetical protein YP_004472887.1 manually curated; KEGG: ypy:YPK_3105 hypothetical protein YP_004472888.1 KEGG: acb:A1S_2944 hypothetical protein YP_004472889.1 PFAM: NERD; DNA topoisomerase, type IA, zn finger; KEGG: pmy:Pmen_4033 NERD domain-containing protein YP_004472890.1 PFAM: acyltransferase 3; KEGG: ank:AnaeK_2883 acyltransferase 3 YP_004472891.1 KEGG: ppf:Pput_2713 uncharacterized peroxidase-related enzyme; TIGRFAM: Alkylhydroperoxidase AhpD core; Uncharacterised peroxidase-related; PFAM: Carboxymuconolactone decarboxylase YP_004472892.1 KEGG: ppw:PputW619_3237 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472893.1 KEGG: ppg:PputGB1_3069 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472894.1 KEGG: rme:Rmet_4523 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004472895.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl01_2715 short-chain dehydrogenase/reductase SDR YP_004472896.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bvi:Bcep1808_3966 major facilitator transporter YP_004472897.1 KEGG: psa:PST_3341 hypothetical protein YP_004472898.1 KEGG: pmy:Pmen_3741 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004472899.1 KEGG: pmy:Pmen_3740 hypothetical protein YP_004472900.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: pmy:Pmen_3739 ATP-dependent helicase HrpB; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal; Helicase-associated domain YP_004472901.1 SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: glucarate dehydratase; KEGG: pfo:Pfl01_3721 D-glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal YP_004472902.1 KEGG: pol:Bpro_3418 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; substrate-binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004472903.1 PFAM: Uncharacterised protein family UPF0259; KEGG: psa:PST_3708 hypothetical protein YP_004472904.1 PFAM: Domain of unknown function DUF88; KEGG: pfl:PFL_5413 hypothetical protein YP_004472905.1 KEGG: pmy:Pmen_3729 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease YP_004472906.1 KEGG: pmy:Pmen_3728 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004472907.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pmy:Pmen_3727 glyoxalase/bleomycin resistance protein/dioxygenase YP_004472908.1 KEGG: psa:PST_0881 flavoprotein; TIGRFAM: Conserved hyptotheical protein CHP03862, flavoprotein, PP4765; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YP_004472909.1 PFAM: histone deacetylase superfamily; KEGG: pmy:Pmen_3722 histone deacetylase superfamily protein YP_004472910.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pfl:PFL_5402 acetyltransferase YP_004472911.1 TIGRFAM: acyl-CoA thioesterase; KEGG: pmy:Pmen_3719 acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase YP_004472912.1 KEGG: spe:Spro_2112 spore coat U domain-containing protein; PFAM: Spore coat protein U; SMART: Spore coat protein U YP_004472913.1 KEGG: spe:Spro_2111 spore coat U domain-containing protein; PFAM: Spore coat protein U; SMART: Spore coat protein U YP_004472914.1 KEGG: spe:Spro_2110 spore coat U domain-containing protein; PFAM: Spore coat protein U; SMART: Spore coat protein U YP_004472915.1 KEGG: pae:PA4651 probable pili assembly chaperone YP_004472916.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: pfo:Pfl01_3669 fimbrial biogenesis outer membrane usher protein YP_004472917.1 KEGG: pap:PSPA7_5302 hypothetical protein; PFAM: Spore coat protein U; SMART: Spore coat protein U YP_004472918.1 KEGG: pfs:PFLU5373 hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004472919.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: pmy:Pmen_0812 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004472920.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: pap:PSPA7_1187 metal transporting P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004472921.1 KEGG: pmy:Pmen_0822 hypothetical protein YP_004472922.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pap:PSPA7_1570 hypothetical protein YP_004472923.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; transcription regulator MAATS, C-terminal; KEGG: pmy:Pmen_0824 TetR family transcriptional regulator YP_004472924.1 KEGG: pag:PLES_14601 major facilitator superfamily (MFS) transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004472925.1 KEGG: pmy:Pmen_0998 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004472926.1 PFAM: TfoX, C-terminal; KEGG: pmy:Pmen_0999 TfoX domain-containing protein YP_004472927.1 PFAM: Pentapeptide repeat; KEGG: pfl:PFL_5260 pentapeptide repeat-containing protein YP_004472928.1 KEGG: pmy:Pmen_1001 hypothetical protein YP_004472929.1 TIGRFAM: Penicillin-binding protein 1B; KEGG: pmy:Pmen_1002 penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004472930.1 KEGG: pfl:PFL_5257 hypothetical protein YP_004472931.1 PFAM: protein of unknown function DUF446; KEGG: pmy:Pmen_1004 hypothetical protein YP_004472932.1 KEGG: pmy:Pmen_1005 hypothetical protein YP_004472933.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic; KEGG: pmy:Pmen_1006 acetolactate synthase 3 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004472934.1 KEGG: psp:PSPPH_0873 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_004472935.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_1008 DNA-binding transcriptional regulator IlvY YP_004472936.1 PFAM: acetohydroxy acid isomeroreductase, catalytic; acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: acetohydroxy acid isomeroreductase; HAMAP: acetohydroxy acid isomeroreductase; KEGG: pmy:Pmen_1009 ketol-acid reductoisomerase YP_004472937.1 KEGG: pmy:Pmen_1010 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004472938.1 KEGG: pfs:PFLU5216 sulfite oxidase subunit YedY; HAMAP: Sulphoxide reductase catalytic subunit YedY; PFAM: Oxidoreductase, molybdopterin-binding domain YP_004472939.1 PFAM: Flavoprotein transmembrane component; KEGG: pfs:PFLU5215 sulfite oxidase subunit YedZ YP_004472940.1 PFAM: Paraquat-inducible protein A; KEGG: pmy:Pmen_1013 paraquat-inducible protein A YP_004472941.1 PFAM: Paraquat-inducible protein A; KEGG: pmy:Pmen_1014 paraquat-inducible protein A YP_004472942.1 PFAM: Mammalian cell entry-related; KEGG: pmy:Pmen_1015 hypothetical protein YP_004472943.1 KEGG: pmy:Pmen_0979 hypothetical protein YP_004472944.1 KEGG: pmy:Pmen_0980 hypothetical protein YP_004472945.1 KEGG: pmy:Pmen_0981 hypothetical protein YP_004472946.1 KEGG: ppf:Pput_2763 carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal YP_004472947.1 PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: ppf:Pput_2764 saccharopine dehydrogenase YP_004472948.1 KEGG: pfo:Pfl01_4833 chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004472949.1 KEGG: psb:Psyr_2494 hypothetical protein; PFAM: Lactonase, 7-bladed beta propeller YP_004472950.1 KEGG: avn:Avin_17120 citrate transporter; TIGRFAM: Citrate transporter; PFAM: Divalent ion symporter YP_004472951.1 KEGG: avn:Avin_17110 hypothetical protein YP_004472952.1 PFAM: protein of unknown function DUF1446; KEGG: avn:Avin_17100 hypothetical protein YP_004472953.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: avn:Avin_17090 LysR family transcriptional regulator YP_004472954.1 KEGG: pmy:Pmen_0990 hypothetical protein YP_004472955.1 KEGG: ppw:PputW619_4488 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004472956.1 KEGG: cyc:PCC7424_0684 hypothetical protein YP_004472957.1 PFAM: Carbonic anhydrase; KEGG: pfo:Pfl01_4773 carbonic anhydrase; SMART: Carbonic anhydrase YP_004472958.1 PFAM: Drug/metabolite transporter; KEGG: pmy:Pmen_1039 hypothetical protein YP_004472959.1 PFAM: substrate-binding protein; KEGG: xne:XNC1_3120 conserved hypothetical protein; exported protein YP_004472960.1 KEGG: pfl:PFL_2174 hypothetical protein YP_004472961.1 KEGG: pag:PLES_01291 alkylphosphonate uptake protein; TIGRFAM: PhnA protein; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal YP_004472962.1 PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB3156 translational inhibitor YP_004472963.1 KEGG: avn:Avin_32910 ribonuclease BN protein; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN-related YP_004472964.1 SMART: Water stress and hypersensitive response domain; KEGG: aau:AAur_pTC10203 lipoprotein YP_004472965.1 PFAM: Drug/metabolite transporter; KEGG: pmy:Pmen_1087 hypothetical protein YP_004472966.1 PFAM: transcription regulator MAATS, C-terminal; transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_3714 TetR family transcriptional regulator YP_004472967.1 KEGG: pmy:Pmen_3715 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004472968.1 KEGG: psa:PST_3939 multidrug/solvent RND transporter TtgB; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004472969.1 KEGG: pmy:Pmen_3717 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004472970.1 PFAM: SNARE associated Golgi protein; KEGG: ent:Ent638_2866 hypothetical protein YP_004472971.1 KEGG: lma:LmjF35.0290 hypothetical protein YP_004472972.1 KEGG: ppf:Pput_1906 hypothetical protein YP_004472973.1 KEGG: art:Arth_3470 hypothetical protein YP_004472974.1 KEGG: pen:PSEEN5396 hypothetical protein YP_004472975.1 KEGG: pfo:Pfl01_3265 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1 YP_004472976.1 PFAM: Amidohydrolase 3; KEGG: pap:PSPA7_3976 hypothetical protein YP_004472977.1 PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: avn:Avin_42320 major facilitator transpoter YP_004472978.1 PFAM: Isochorismatase-like; KEGG: pen:PSEEN0851 isochorismatase superfamily hydrolase YP_004472979.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppg:PputGB1_2230 LysR family transcriptional regulator YP_004472980.1 KEGG: pfs:PFLU3710 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472981.1 KEGG: pfo:Pfl01_1957 transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal; ATPase, AAA+ type, core YP_004472982.1 KEGG: ppg:PputGB1_2973 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004472983.1 KEGG: pmy:Pmen_2668 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004472984.1 KEGG: pmy:Pmen_2667 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain YP_004472985.1 KEGG: cqu:CpipJ_CPIJ011349 igf2 mRNA binding protein YP_004472986.1 PFAM: Excalibur calcium-binding domain; KEGG: pmy:Pmen_1043 hypothetical protein YP_004472987.1 KEGG: pfs:PFLU0271 hypothetical protein YP_004472988.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: psb:Psyr_3720 filamentation induced by cAMP protein Fic YP_004472989.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: pmy:Pmen_1646 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; PAC motif; PAS YP_004472990.1 KEGG: pmy:Pmen_1052 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related YP_004472991.1 PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; HAMAP: peptidyl-tRNA hydrolase; KEGG: pmy:Pmen_1053 peptidyl-tRNA hydrolase YP_004472992.1 TIGRFAM: ribosomal protein L25, long-form; HAMAP: ribosomal protein L25, short-form; ribosomal protein L25, long-form; KEGG: psa:PST_3190 50S ribosomal protein L25/general stress protein Ctc; PFAM: ribosomal protein L25, short-form YP_004472993.1 TIGRFAM: phosphoribosyl pyrophosphokinase; KEGG: pmy:Pmen_1055 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_004472994.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: pmy:Pmen_1056 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004472995.1 TIGRFAM: Outer membrane lipoprotein LolB; HAMAP: Outer membrane lipoprotein LolB; KEGG: psb:Psyr_0946 outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB YP_004472996.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: pmy:Pmen_1058 hypothetical protein YP_004472997.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: pmy:Pmen_1059 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain YP_004472998.1 SMART: peptide chain release factor; TIGRFAM: peptide chain release factor 1; KEGG: pmy:Pmen_1060 peptide chain release factor 1; HAMAP: peptide chain release factor 1; PFAM: peptide chain release factor class I/class II; peptide chain release factor YP_004472999.1 KEGG: pmy:Pmen_1061 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: methyltransferase small YP_004473000.1 KEGG: pmy:Pmen_1062 molybdopterin biosynthesis protein MoeB; manually curated; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB YP_004473001.1 PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: glutamate racemase; HAMAP: glutamate racemase; KEGG: avn:Avin_41440 glutamate racemase YP_004473002.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: ppw:PputW619_4452 hypothetical protein YP_004473003.1 PFAM: Uncharacterised protein family UPF0153; KEGG: pfs:PFLU0743 hypothetical protein YP_004473004.1 KEGG: pmy:Pmen_1065 hypothetical protein YP_004473005.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_1962 short chain dehydrogenase/reductase oxidoreductase YP_004473006.1 KEGG: pfs:PFLU0750 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004473007.1 KEGG: pst:PSPTO_1122 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004473008.1 PFAM: Domain of unknown function DUF523; Domain of unknown function DUF1722; KEGG: pmy:Pmen_1073 hypothetical protein YP_004473009.1 KEGG: pfl:PFL_5144 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02450, tryptophan-rich; PFAM: Conserved hypothetical protein CHP02450, tryptophan-rich YP_004473010.1 PFAM: Amine oxidase; KEGG: pmy:Pmen_1075 FAD dependent oxidoreductase YP_004473011.1 PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: pmy:Pmen_1076 NAD-dependent epimerase/dehydratase YP_004473012.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: pmy:Pmen_1077 ferrochelatase YP_004473013.1 KEGG: pfl:PFL_5140 uracil permease; TIGRFAM: xanthine/uracil permease; PFAM: xanthine/uracil/vitamin C permease YP_004473014.1 KEGG: pfs:PFLU0899 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: phosphoribosyltransferase YP_004473015.1 PFAM: phosphoribosyltransferase; KEGG: pmy:Pmen_0947 hypoxanthine-guanine phosphoribosyltransferase YP_004473016.1 KEGG: pmy:Pmen_0948 sulfate transporter YchM; TIGRFAM: Sulphate anion transporter; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS YP_004473017.1 KEGG: pmy:Pmen_0949 hypothetical protein YP_004473018.1 PFAM: transposase, IS111A/IS1328/IS1533, N-terminal; transposase, IS116/IS110/IS902; KEGG: ppu:PP_5290 ISPpu10, transposase YP_004473019.1 KEGG: pmy:Pmen_3601 hypothetical protein YP_004473020.1 KEGG: pmy:Pmen_3600 hypothetical protein YP_004473021.1 PFAM: protein of unknown function DUF748; AsmA; KEGG: pen:PSEEN4740 hypothetical protein YP_004473022.1 PFAM: RNA methyltransferase, RsmD; KEGG: pfl:PFL_5284 hypothetical protein YP_004473023.1 PFAM: protein of unknown function DUF2236; KEGG: pmy:Pmen_3596 hypothetical protein YP_004473024.1 PFAM: AMP-dependent synthetase/ligase; TIGRFAM: acetate-CoA ligase; HAMAP: acetate-CoA ligase; KEGG: pmy:Pmen_3595 acetyl-CoA synthetase YP_004473025.1 HAMAP: phosphoglucose isomerase (PGI); KEGG: pfo:Pfl01_4813 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_004473026.1 TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: pfl:PFL_5278 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004473027.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: pfo:Pfl01_4811 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004473028.1 TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: pfo:Pfl01_4810 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004473029.1 TIGRFAM: poly(A) polymerase, PcnB; KEGG: pmy:Pmen_3590 poly(A) polymerase; PFAM: poly A polymerase, head domain YP_004473030.1 KEGG: pfl:PFL_5274 sigma-54 dependent DNA-binding response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004473031.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; Sodium/solute symporter; KEGG: pmy:Pmen_3588 two-component sensor kinase CbrA; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004473032.1 KEGG: pmy:Pmen_3587 hypothetical protein YP_004473033.1 PFAM: Domain of unknown function DUF404; Domain of unknown function DUF407; Domain of unknown function DUF403; KEGG: pmy:Pmen_0656 hypothetical protein YP_004473034.1 KEGG: pmy:Pmen_0657 transglutaminase; PFAM: Bacterial transglutaminase-like, N-terminal; transglutaminase-like; SMART: transglutaminase-like YP_004473035.1 KEGG: aai:AARI_34100 drug ABC transporter inner membrane subunit YP_004473036.1 PFAM: Domain of unknown function DUF58; KEGG: pmy:Pmen_3321 hypothetical protein YP_004473037.1 KEGG: pmy:Pmen_3320 ATPase; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core YP_004473038.1 KEGG: pmy:Pmen_3319 hypothetical protein YP_004473039.1 KEGG: pmy:Pmen_3318 hypothetical protein YP_004473040.1 PFAM: protein of unknown function DUF95, transmembrane; KEGG: pmy:Pmen_3317 hypothetical protein YP_004473041.1 KEGG: pmy:Pmen_3316 RDD domain-containing protein; manually curated; PFAM: RDD YP_004473042.1 PFAM: protein of unknown function DUF975; KEGG: pmy:Pmen_3315 hypothetical protein YP_004473043.1 PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; KEGG: pmy:Pmen_3314 exonuclease I; SMART: Exonuclease YP_004473044.1 KEGG: pmy:Pmen_3313 H-NS family protein MvaT YP_004473045.1 TIGRFAM: formyltetrahydrofolate deformylase; KEGG: pmy:Pmen_3312 formyltetrahydrofolate deformylase; PFAM: formyl transferase, N-terminal; Amino acid-binding ACT YP_004473046.1 KEGG: pmy:Pmen_3311 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004473047.1 KEGG: psa:PST_1166 hypothetical protein YP_004473048.1 KEGG: pmy:Pmen_3309 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473049.1 KEGG: pmy:Pmen_3308 protein of unknown function DUF853, NPT hydrolase PFAM: protein of unknown function DUF853, nucleotide triphosphate hydrolase, SMART: ATPase, AAA+ type, core YP_004473050.1 KEGG: pmy:Pmen_3307 hypothetical protein YP_004473051.1 PFAM: Aldose 1-epimerase; KEGG: psp:PSPPH_0931 aldose 1-epimerase YP_004473052.1 manually curated; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: pmy:Pmen_3305 GntR family transcriptional regulator; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004473053.1 PFAM: Drug/metabolite transporter; KEGG: ppf:Pput_1200 hypothetical protein YP_004473054.1 KEGG: pmy:Pmen_3303 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004473055.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_3302 tripartite ATP-independent periplasmic transporter DctQ YP_004473056.1 KEGG: pmy:Pmen_3301 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004473057.1 PFAM: SMP-30/gluconolaconase/LRE-like region; KEGG: pmy:Pmen_3300 gluconolactonase YP_004473058.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pfo:Pfl01_3452 NAD-dependent epimerase/dehydratase YP_004473059.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: pfs:PFLU0849 5-dehydro-4-deoxyglucarate dehydratase YP_004473060.1 KEGG: avn:Avin_52040 hypothetical protein YP_004473061.1 PFAM: Integrase, catalytic core; KEGG: sml:Smlt4369 transposase YP_004473062.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: oih:OB2838 hypothetical protein YP_004473063.1 KEGG: ssm:Spirs_0511 hypothetical protein YP_004473064.1 KEGG: afn:Acfer_1101 hypothetical protein YP_004473065.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: pfo:Pfl01_0827 5-dehydro-4-deoxyglucarate dehydratase YP_004473066.1 manually curated; PFAM: HTH transcriptional regulator, LacI; substrate-binding protein/LacI transcriptional regulator; KEGG: mpt:Mpe_A0968 LacI family transcription regulator; SMART: HTH transcriptional regulator, LacI YP_004473067.1 KEGG: ppf:Pput_3099 D-galactonate transporter; TIGRFAM: D-galactonate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004473068.1 SMART: SAF domain; TIGRFAM: Galactarate dehydratase; KEGG: pmy:Pmen_1218 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain YP_004473069.1 KEGG: pmy:Pmen_1219 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004473070.1 KEGG: pct:PC1_2179 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004473071.1 KEGG: dda:Dd703_1274 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473072.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dda:Dd703_1786 extracellular solute-binding protein family 1 YP_004473073.1 PFAM: Aminoglycoside phosphotransferase; KEGG: bmj:BMULJ_06072 homoserine kinase type II YP_004473074.1 KEGG: bav:BAV0462 decarboxylating aminotransferase; PFAM: Aminotransferase class-III YP_004473075.1 KEGG: bur:Bcep18194_B1795 RNA 2'-phosphotransferase-like protein; HAMAP: 2'-phosphotransferase KptA, PFAM: phosphotransferase KptA/Tpt1 YP_004473076.1 KEGG: pmy:Pmen_1337 Sel1 domain-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004473077.1 PFAM: FAD dependent oxidoreductase; KEGG: ppf:Pput_1813 FAD dependent oxidoreductase YP_004473078.1 KEGG: bmu:Bmul_3720 XRE family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004473079.1 KEGG: pen:PSEEN2186 glutamine synthetase; PFAM: glutamine synthetase, catalytic domain YP_004473080.1 PFAM: protein of unknown function DUF1282; KEGG: yen:YE2135 hypothetical protein YP_004473081.1 KEGG: csa:Csal_1496 hypothetical protein YP_004473082.1 KEGG: sml:Smlt4404 hypothetical protein YP_004473083.1 KEGG: mfa:Mfla_1295 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal YP_004473084.1 KEGG: csa:Csal_0955 cytochrome-c oxidase; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004473085.1 KEGG: sgl:SG0665 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004473086.1 KEGG: smt:Smal_3792 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic YP_004473087.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: eay:EAM_0981 protoheme IX farnesyltransferase (heme O synthase); PFAM: UbiA prenyltransferase YP_004473088.1 KEGG: psa:PST_2233 hypothetical protein YP_004473089.1 PFAM: S-adenosylmethionine-dependent methyltransferase; KEGG: psa:PST_2866 SAM-dependent methyltransferase YP_004473090.1 PFAM: Outer membrane porin, bacterial; KEGG: ppg:PputGB1_4239 outer membrane porin YP_004473091.1 KEGG: pmy:Pmen_1340 5-carboxymethyl-2-hydroxymuconate isomerase-like protein YP_004473092.1 TIGRFAM: glycine cleavage system T protein; KEGG: pmy:Pmen_1343 glycine cleavage system T protein; PFAM: glycine cleavage T-protein, N-terminal; glycine cleavage T-protein, C-terminal barrel YP_004473093.1 TIGRFAM: glycine cleavage system P protein, homodimeric; HAMAP: glycine cleavage system P protein, homodimeric; KEGG: pfl:PFL_4641 glycine dehydrogenase; PFAM: glycine cleavage system P-protein, N-terminal YP_004473094.1 TIGRFAM: glycine cleavage H-protein, subgroup; HAMAP: glycine cleavage H-protein; KEGG: pag:PLES_28481 glycine cleavage system protein H; PFAM: glycine cleavage H-protein YP_004473095.1 KEGG: pmy:Pmen_3249 hypothetical protein YP_004473096.1 PFAM: Uncharacterised protein family YebG; KEGG: pmy:Pmen_3241 YebG family protein YP_004473097.1 PFAM: phosphate-starvation-induced PsiE-like; KEGG: ppw:PputW619_0824 phosphate-starvation-inducible E YP_004473098.1 KEGG: pmy:Pmen_3239 non-specific serine/threonine protein kinase; PFAM: SNF2-related; Zinc finger, SWIM-type; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004473099.1 KEGG: pag:PLES_10911 hypothetical protein YP_004473100.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: aav:Aave_0220 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004473101.1 KEGG: pmy:Pmen_1017 hypothetical protein YP_004473102.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_1018 short chain dehydrogenase YP_004473103.1 KEGG: pmy:Pmen_1019 hypothetical protein YP_004473104.1 KEGG: pfl:PFL_1025 hypothetical protein; HAMAP: Uncharacterised protein family UPF0246; PFAM: Uncharacterised protein family UPF0246 YP_004473105.1 KEGG: pmy:Pmen_1033 PhoH family protein; PFAM: PhoH-like protein; SMART: nucleotide binding protein, PINc YP_004473106.1 KEGG: ppf:Pput_4433 molybdenum cofactor biosynthesis protein MoaC; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain YP_004473107.1 PFAM: ThiamineS; KEGG: pmy:Pmen_1035 molybdopterin synthase subunit MoaD YP_004473108.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: pmy:Pmen_1036 molybdopterin synthase subunit MoaE YP_004473109.1 KEGG: pmy:Pmen_1037 hypothetical protein YP_004473110.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; HAMAP: phosphoribosylglycinamide formyltransferase 2; KEGG: azo:azo1269 phosphoribosylglycinamide formyltransferase 2 YP_004473111.1 PFAM: transporter-associated domain; Cystathionine beta-synthase, core; Domain of unknown function DUF21; KEGG: psa:PST_1188 Mg2+ and Co2+ transporter CorB YP_004473112.1 PFAM: Cytochrome c assembly protein; KEGG: pmy:Pmen_3403 cytochrome c assembly protein YP_004473113.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: pmy:Pmen_3402 signal recognition particle subunit FFH/SRP54 (SRP54); SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004473114.1 TIGRFAM: ribosomal protein S16; HAMAP: ribosomal protein S16; KEGG: pen:PSEEN4260 30S ribosomal protein S16; PFAM: ribosomal protein S16 YP_004473115.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: pmy:Pmen_3400 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel YP_004473116.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: pmy:Pmen_3399 tRNA (guanine-N(1)-)-methyltransferase YP_004473117.1 TIGRFAM: ribosomal protein L19; HAMAP: ribosomal protein L19; KEGG: pmy:Pmen_3398 50S ribosomal protein L19; PFAM: ribosomal protein L19 YP_004473118.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: pmy:Pmen_3396 site-specific tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004473119.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: psa:PST_1196 thiol:disulfide interchange protein DsbC YP_004473120.1 KEGG: pfl:PFL_1103 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT YP_004473121.1 TIGRFAM: threonine synthase; KEGG: pmy:Pmen_3393 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004473122.1 KEGG: pap:PSPA7_2493 DNA-specific endonuclease I; PFAM: Endonuclease I YP_004473123.1 PFAM: protein of unknown function DUF2170; KEGG: pmy:Pmen_3390 hypothetical protein YP_004473124.1 PFAM: PspA/IM30; KEGG: pmy:Pmen_3389 phage shock protein A, PspA YP_004473125.1 KEGG: pfl:PFL_1113 hypothetical protein YP_004473126.1 PFAM: Band 7 protein; KEGG: pmy:Pmen_3387 hypothetical protein YP_004473127.1 KEGG: sde:Sde_3475 hypothetical protein YP_004473128.1 KEGG: pmy:Pmen_3386 hypothetical protein YP_004473129.1 PFAM: peptidase S54, rhomboid domain; KEGG: pmy:Pmen_3385 rhomboid family protein YP_004473130.1 KEGG: pmy:Pmen_3384 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthase-like protein YP_004473131.1 KEGG: pen:PSEEN0454 hypothetical protein YP_004473132.1 HAMAP: ATP-dependent RNA helicase rhlB; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmy:Pmen_3565 ATP-dependent RNA helicase RhlB; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004473133.1 KEGG: pmy:Pmen_3564 peptidase M19, renal dipeptidase; PFAM: peptidase M19, renal dipeptidase YP_004473134.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Cyclic nucleotide-binding domain; KEGG: pmy:Pmen_3563 cyclic nucleotide-binding protein; SMART: Diguanylate cyclase, predicted; Cyclic nucleotide-binding domain YP_004473135.1 KEGG: psa:PST_1178 carboxylesterase; PFAM: phospholipase/carboxylesterase YP_004473136.1 KEGG: pmy:Pmen_3560 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004473137.1 KEGG: pfs:PFLU1001 amino acid ABC transporter membrane protein; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004473138.1 KEGG: ppw:PputW619_0906 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004473139.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_3557 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004473140.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: avn:Avin_10700 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004473141.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; KEGG: psa:PST_1926 methylmalonate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004473142.1 PFAM: General substrate transporter; KEGG: bxe:Bxe_C0243 major facilitator superfamily transporter metabolite/H(+) symporter YP_004473143.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppw:PputW619_0766 LysR family transcriptional regulator YP_004473144.1 KEGG: pfl:PFL_1056 hypothetical protein YP_004473145.1 KEGG: pmy:Pmen_3554 CDP-diacylglycerol-choline O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004473146.1 PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: pmy:Pmen_3553 GIY-YIG nuclease superfamily protein YP_004473147.1 PFAM: glutathione S-transferase, C-terminal; KEGG: pap:PSPA7_1259 hypothetical protein YP_004473148.1 HAMAP: Ethanolamine ammonia-lyase light chain; KEGG: pfl:PFL_5474 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain YP_004473149.1 KEGG: psb:Psyr_0628 ethanolamine ammonia lyase large subunit; PFAM: Ethanolamine ammonia lyase large subunit YP_004473150.1 KEGG: pag:PLES_09531 transport protein; TIGRFAM: Ethanolamine permease; PFAM: Amino acid permease domain YP_004473151.1 PFAM: Aldehyde dehydrogenase domain; KEGG: pmy:Pmen_1964 aldehyde dehydrogenase YP_004473152.1 KEGG: ebi:EbC_09590 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473153.1 PFAM: Drug/metabolite transporter; KEGG: bcm:Bcenmc03_4446 hypothetical protein YP_004473154.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppg:PputGB1_1783 LysR family transcriptional regulator YP_004473155.1 PFAM: Helix-turn-helix, HxlR type; KEGG: maq:Maqu_3823 HxlR family transcriptional regulator YP_004473156.1 KEGG: vvi:100264393 hypothetical protein LOC100264393 YP_004473157.1 KEGG: pfl:PFL_4124 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473158.1 PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; KEGG: pfl:PFL_4123 2-isopropylmalate synthase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004473159.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: ddc:Dd586_2068 LysR family transcriptional regulator YP_004473160.1 KEGG: ddc:Dd586_2069 beta-lactamase-like protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004473161.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfo:Pfl01_3893 ADP-ribosylation/crystallin J1 YP_004473162.1 KEGG: bvi:Bcep1808_6680 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain YP_004473163.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ddc:Dd586_0851 LysR family transcriptional regulator YP_004473164.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vap:Vapar_1954 LysR family transcriptional regulator YP_004473165.1 PFAM: Major facilitator superfamily MFS-1; KEGG: rpc:RPC_1161 major facilitator transporter YP_004473166.1 PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; KEGG: cti:RALTA_B1085 altronic acid hydratase; SMART: SAF domain YP_004473167.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: vap:Vapar_5639 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004473168.1 TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: ctt:CtCNB1_3471 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: Aldehyde-lyase domain YP_004473169.1 KEGG: aav:Aave_2182 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004473170.1 TIGRFAM: 4-aminobutyrate aminotransferase, bacterial; KEGG: psb:Psyr_0146 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III YP_004473171.1 KEGG: msv:Mesil_2189 succinate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004473172.1 PFAM: Outer membrane porin, bacterial; KEGG: ppg:PputGB1_3212 outer membrane porin YP_004473173.1 SMART: GAF; KEGG: rlt:Rleg2_5503 transcriptional regulator, PucR family YP_004473174.1 PFAM: protein of unknown function DUF1185; KEGG: atu:Atu5223 hypothetical protein YP_004473175.1 KEGG: atu:Atu5229 nitrilotriacetate monooxygenase component B; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_004473176.1 KEGG: atu:Atu5228 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004473177.1 PFAM: Luciferase-like, subgroup; KEGG: atu:Atu5227 flavin-dependent oxidoreductase YP_004473178.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: mes:Meso_2526 alpha/beta hydrolase fold YP_004473179.1 PFAM: NIPSNAP; KEGG: atu:Atu5224 hypothetical protein YP_004473180.1 SMART: ATPase, AAA+ type, core; TIGRFAM: glycine betaine/L-proline transport ATP-binding subunit; KEGG: mes:Meso_2529 glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core YP_004473181.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu5219 ABC transporter membrane spanning protein (glycine betaine/L-proline) YP_004473182.1 PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: atu:Atu5220 glycine betaine transporter periplasmic subunit YP_004473183.1 KEGG: dac:Daci_2568 carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase YP_004473184.1 KEGG: pfo:Pfl01_2292 hypothetical protein YP_004473185.1 KEGG: avn:Avin_09480 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004473186.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; HAMAP: 3-isopropylmalate dehydratase, small subunit; KEGG: avn:Avin_09800 3-isopropylmalate dehydratase small subunit LeuD2; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004473187.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit; KEGG: pfo:Pfl01_2360 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004473188.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_0120 short-chain dehydrogenase/reductase SDR YP_004473189.1 PFAM: glutaredoxin; KEGG: pmy:Pmen_3551 glutaredoxin YP_004473190.1 KEGG: pmy:Pmen_3549 nucleoid-associated protein NdpA; HAMAP: nucleoid-associated protein NdpA; PFAM: nucleoid-associated protein NdpA YP_004473191.1 PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: amr:AM1_2739 TPR domain-containing protein YP_004473192.1 PFAM: Amino acid permease domain; KEGG: pmy:Pmen_3546 inner membrane protein YjeH YP_004473193.1 KEGG: pmy:Pmen_3545 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004473194.1 PFAM: DinB; KEGG: pfs:PFLU2254 hypothetical protein YP_004473195.1 PFAM: Lipopolysaccharide kinase; KEGG: pmy:Pmen_2479 lipopolysaccharide kinase YP_004473196.1 PFAM: methyltransferase type 11; KEGG: pmy:Pmen_2478 methyltransferase type 11 YP_004473197.1 KEGG: pmy:Pmen_2477 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004473198.1 KEGG: pmy:Pmen_2476 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004473199.1 PFAM: Sulfatase; KEGG: pmy:Pmen_2475 sulfatase YP_004473200.1 PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: pmy:Pmen_2474 phosphoesterase, PA-phosphatase related YP_004473201.1 PFAM: Dual specificity phosphatase, catalytic domain; KEGG: pmy:Pmen_2473 protein tyrosine/serine phosphatase YP_004473202.1 KEGG: ppw:PputW619_2982 lipoprotein YP_004473203.1 KEGG: eum:ECUMN_4818 chromate ion transporter; TIGRFAM: Chromate transporter long chain; PFAM: Chromate transporter YP_004473204.1 manually curated; KEGG: psb:Psyr_3356 hypothetical protein YP_004473205.1 KEGG: avn:Avin_11460 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004473206.1 PFAM: Amino acid permease domain; KEGG: pmy:Pmen_3544 amino acid permease-associated region YP_004473207.1 PFAM: methyltransferase type 11; KEGG: pmy:Pmen_3543 ribosomal protein L11 methylase-like protein YP_004473208.1 KEGG: pmy:Pmen_3542 exonuclease subunit SbcD; TIGRFAM: Exonuclease SbcD; PFAM: Metallo-dependent phosphatase YP_004473209.1 KEGG: pmy:Pmen_2174 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473210.1 KEGG: ppw:PputW619_1251 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004473211.1 PFAM: Amidohydrolase 2; KEGG: ppw:PputW619_1252 amidohydrolase 2 YP_004473212.1 PFAM: Dicarboxylate carrier MatC N-terminal; KEGG: ppw:PputW619_1253 dicarboxylate carrier MatC domain-containing protein YP_004473213.1 KEGG: sml:Smlt0451 dehydrogenase YP_004473214.1 PFAM: RecF/RecN/SMC; KEGG: pmy:Pmen_3538 SMC domain-containing protein YP_004473215.1 KEGG: dno:DNO_1199 hypothetical protein YP_004473216.1 PFAM: glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: pfl:PFL_1122 glucan biosynthesis protein D YP_004473217.1 PFAM: YaeQ; KEGG: pmy:Pmen_3382 YaeQ family protein YP_004473218.1 KEGG: pmy:Pmen_3376 exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1 YP_004473219.1 PFAM: protein of unknown function DUF533; KEGG: pfs:PFLU1216 hypothetical protein YP_004473220.1 KEGG: pag:PLES_12741 chemotaxis transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473221.1 KEGG: pap:PSPA7_1430 hypothetical protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004473222.1 PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: pap:PSPA7_1431 methyltransferase; SMART: MCP methyltransferase, CheR-type YP_004473223.1 KEGG: pag:PLES_12771 CheW domain protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004473224.1 KEGG: pap:PSPA7_1433 chemotaxis sensor/effector fusion protein; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein YP_004473225.1 SMART: Signal transduction response regulator, receiver domain; HAMAP: Signal transduction response regulator, chemotaxis, CheB; KEGG: pap:PSPA7_1435 chemotaxis-specific methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain YP_004473226.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: pau:PA14_16500 two-component response regulator; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain YP_004473227.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: ppy:PPE_00585 GGDEF domain containing protein; SMART: Diguanylate cyclase, predicted; HAMP linker domain YP_004473228.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_004473229.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: pst:PSPTO_1501 lysyl-tRNA synthetase YP_004473230.1 KEGG: pmy:Pmen_3368 hypothetical protein YP_004473231.1 KEGG: pst:PSPTO_1503 hypothetical protein; TIGRFAM: Conserved hypothetical protein QEGLA; PFAM: protein of unknown function DUF1704 YP_004473232.1 KEGG: psa:PST_2749 lipoprotein YP_004473233.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pfo:Pfl01_1066 OmpA/MotB YP_004473234.1 KEGG: pfl:PFL_1145 hypothetical protein YP_004473235.1 KEGG: pfl:PFL_1146 hypothetical protein YP_004473236.1 HAMAP: phosphoenolpyruvate carboxylase, bacterial/plant-type; KEGG: pst:PSPTO_1508 phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase YP_004473237.1 TIGRFAM: adenylate kinase, subfamily; HAMAP: adenylate kinase; KEGG: psa:PST_2744 adenylate kinase; PFAM: adenylate kinase; adenylate kinase, active site lid domain YP_004473238.1 KEGG: pmy:Pmen_3358 5'-nucleotidase; TIGRFAM: 5-nucleotidase lipoprotein e(P4); PFAM: Acid phosphatase (Class B) YP_004473239.1 KEGG: pmy:Pmen_3357 peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: peptidase M22, glycoprotease YP_004473240.1 KEGG: pmy:Pmen_3356 hypothetical protein YP_004473241.1 PFAM: protein of unknown function DUF72; KEGG: pau:PA14_16730 hypothetical protein YP_004473242.1 PFAM: Uncharacterised conserved protein UCP028101; KEGG: pmy:Pmen_3298 hypothetical protein YP_004473243.1 PFAM: peptidase M75, Imelysin; KEGG: pmy:Pmen_3297 periplasmic lipoprotein-like protein YP_004473244.1 PFAM: protein of unknown function DUF1111; KEGG: ppw:PputW619_0978 hypothetical protein YP_004473245.1 PFAM: peptidase M75, Imelysin; KEGG: pmy:Pmen_3326 hypothetical protein YP_004473246.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: pmy:Pmen_3323 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004473247.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: pmy:Pmen_3322 superoxide dismutase YP_004473248.1 PFAM: Drug/metabolite transporter; KEGG: pmy:Pmen_3089 hypothetical protein YP_004473249.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pmy:Pmen_1114 lysine exporter protein LysE/YggA YP_004473250.1 KEGG: pen:PSEEN1124 chromosome replication initiation inhibitor protein; TIGRFAM: transcription regulator ArgP; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004473251.1 KEGG: pmy:Pmen_1117 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004473252.1 KEGG: pmy:Pmen_1119 hypothetical protein YP_004473253.1 KEGG: pmy:Pmen_1120 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004473254.1 KEGG: pag:PLES_47321 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004473255.1 PFAM: acyl carrier protein phosphodiesterase; KEGG: pmy:Pmen_1122 hypothetical protein YP_004473256.1 KEGG: ddc:Dd586_1264 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004473257.1 KEGG: pfo:Pfl01_1350 ammonia monooxygenase; TIGRFAM: AbrB duplication, membrane protein; PFAM: ammonia monooxygenase YP_004473258.1 KEGG: pmy:Pmen_1125 lyso-ornithine lipid acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004473259.1 KEGG: pmy:Pmen_1126 ornithine-acyl[acyl carrier protein] N-acyltransferase YP_004473260.1 KEGG: lhk:LHK_01654 hypothetical protein YP_004473261.1 KEGG: pmy:Pmen_1128 beta-lactamase domain-containing protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004473262.1 PFAM: phospholipase D/transphosphatidylase; KEGG: ppw:PputW619_0995 phospholipase YP_004473263.1 KEGG: pst:PSPTO_3195 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004473264.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: psp:PSPPH_2657 hypothetical protein YP_004473265.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; KEGG: mch:Mchl_1730 PAS/PAC sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS YP_004473266.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; KEGG: psb:Psyr_2700 histidine kinase; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS YP_004473267.1 KEGG: pno:SNOG_15876 hypothetical protein YP_004473268.1 KEGG: pfs:PFLU3715 hypothetical protein YP_004473269.1 KEGG: eca:ECA3292 oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004473270.1 KEGG: scl:sce8618 hypothetical protein YP_004473271.1 KEGG: aav:Aave_0400 ymc-like protein YP_004473272.1 KEGG: xtr:549528 tetratricopeptide repeat domain 39A YP_004473273.1 PFAM: protein of unknown function DUF945; KEGG: pfl:PFL_0160 hypothetical protein YP_004473274.1 KEGG: pfo:Pfl01_2462 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004473275.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: tbi:Tbis_0615 ribosomal-protein-alanine acetyltransferase YP_004473276.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppf:Pput_3329 major facilitator transporter YP_004473277.1 KEGG: xcv:XCV3887 hypothetical protein YP_004473278.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Cache; KEGG: har:HEAR1734 GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted YP_004473279.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfs:PFLU3068 LysR family transcriptional regulator YP_004473280.1 KEGG: pfs:PFLU3067 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473281.1 KEGG: pag:PLES_59171 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473282.1 KEGG: pmy:Pmen_4524 aminotransferase; PFAM: Aminotransferase class-III YP_004473283.1 KEGG: pmy:Pmen_4525 L-glutamine synthetase; PFAM: glutamine synthetase, catalytic domain YP_004473284.1 PFAM: Amidase; KEGG: pmy:Pmen_1657 amidase YP_004473285.1 KEGG: ttr:Tter_1092 PA14 domain protein YP_004473286.1 KEGG: psp:PSPPH_1742 hypothetical protein YP_004473287.1 KEGG: psp:PSPPH_1743 L-sorbosone dehydrogenase YP_004473288.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: ddd:Dda3937_00622 OsmC/Ohr family protein YP_004473289.1 KEGG: rle:RL0295 hypothetical protein YP_004473290.1 KEGG: xca:xccb100_3910 secreted protein YP_004473291.1 KEGG: xcc:XCC2676 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473292.1 KEGG: avn:Avin_10570 integral membrane protein TerC family; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC YP_004473293.1 KEGG: pfl:PFL_3997 lipoprotein YP_004473294.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pol:Bpro_3433 GCN5-related N-acetyltransferase YP_004473295.1 KEGG: pfl:PFL_3331 ADP-ribose pyrophosphatase; TIGRFAM: nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain YP_004473296.1 KEGG: pae:PA4184 probable transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473297.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppu:PP_2997 LysR family transcriptional regulator YP_004473298.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: ppf:Pput_2695 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004473299.1 KEGG: ppu:PP_2999 glyoxalase YP_004473300.1 PFAM: MaoC-like dehydratase; KEGG: ppf:Pput_2693 dehydratase YP_004473301.1 KEGG: ppf:Pput_2692 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III YP_004473302.1 TIGRFAM: Shikimate dehydrogenase; HAMAP: Shikimate, quinate/shikimate dehydrogenase; KEGG: ppf:Pput_2691 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004473303.1 TIGRFAM: Dehydroquinase, class II; KEGG: bge:BC1002_3582 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II YP_004473304.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pst:PSPTO_2617 LysR family transcriptional regulator YP_004473305.1 PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine/succinylornithine aminotransferase; HAMAP: acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: pst:PSPTO_2618 acetylornithine aminotransferase YP_004473306.1 PFAM: protein of unknown function DUF81; KEGG: smt:Smal_1292 protein of unknown function DUF81 YP_004473307.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A1632 LysR family transcriptional regulator YP_004473308.1 KEGG: pfo:Pfl01_0829 D-galactonate transporter; TIGRFAM: D-galactonate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004473309.1 KEGG: azl:AZL_c03510 transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; substrate-binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004473310.1 KEGG: psb:Psyr_2051 response regulator receiver:transcriptional regulatory protein, C-terminal; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004473311.1 KEGG: mca:MCA1615 resolvase site-specific recombinase; PFAM: Resolvase, N-terminal; Helix-turn-helix, Fis-type; SMART: Resolvase, N-terminal YP_004473312.1 KEGG: pmy:Pmen_2642 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004473313.1 KEGG: pmy:Pmen_2641 transcriptional activator FtrA; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473314.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: psb:Psyr_4207 GCN5-related N-acetyltransferase YP_004473315.1 KEGG: bte:BTH_I2719 pathogenesis-related protein YP_004473316.1 KEGG: bte:BTH_I2720 hypothetical protein YP_004473317.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; GAF; Signal transduction response regulator, receiver domain; KEGG: psp:PSPPH_1261 two-component sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain YP_004473318.1 KEGG: ppw:PputW619_2372 membrane protein AbrB duplication; TIGRFAM: AbrB duplication, membrane protein; PFAM: ammonia monooxygenase YP_004473319.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppw:PputW619_2373 LysR family transcriptional regulator YP_004473320.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pwa:Pecwa_1371 TetR family transcriptional regulator YP_004473321.1 PFAM: protein of unknown function DUF1348; KEGG: ppw:PputW619_3096 hypothetical protein YP_004473322.1 KEGG: ppg:PputGB1_2124 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473323.1 KEGG: psb:Psyr_1491 histidine kinase, HAMP region: chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473324.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: asa:ASA_0574 flavin-binding monooxygenase involved in arsenic resistance YP_004473325.1 manually curated; PFAM: HTH transcriptional regulator, ArsR; KEGG: asa:ASA_0575 transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004473326.1 KEGG: pfl:PFL_2186 arsenic resistance transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004473327.1 KEGG: pfo:Pfl01_2398 protein tyrosine phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_004473328.1 KEGG: ppg:PputGB1_3080 arsenical resistance protein ArsH; TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase YP_004473329.1 KEGG: ppu:PP_1924 phosphinothricin N-acetyltransferase, PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004473330.1 KEGG: ppf:Pput_3035 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein YP_004473331.1 KEGG: azo:azo0631 HD-domain-containing protein; PFAM: GAF; Metal-dependent phosphohydrolase, HD subdomain; SMART: GAF; Metal-dependent phosphohydrolase, HD domain YP_004473332.1 KEGG: pol:Bpro_0719 hypothetical protein YP_004473333.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: azo:azo0629 hypothetical protein YP_004473334.1 KEGG: pol:Bpro_0721 adenylate/guanylate cyclase; PFAM: CHASE2; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_004473335.1 KEGG: pde:Pden_4527 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004473336.1 PFAM: PrpF protein; KEGG: pfl:PFL_2685 hypothetical protein YP_004473337.1 PFAM: Domain of unknown function DUF1737; KEGG: cvi:CV_1903 hypothetical protein YP_004473338.1 KEGG: pmy:Pmen_1650 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473339.1 KEGG: psa:PST_2263 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473340.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN3898 LysR family transcriptional regulator YP_004473341.1 PFAM: FAD dependent oxidoreductase; KEGG: ppf:Pput_5167 FAD dependent oxidoreductase YP_004473342.1 KEGG: psb:Psyr_3514 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004473343.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN5404 LysR family transcriptional regulator YP_004473344.1 KEGG: ppu:PP_4108 aminotransferase class-III; PFAM: Aminotransferase class-III YP_004473345.1 PFAM: protein of unknown function DUF1338; KEGG: psp:PSPPH_3458 hypothetical protein YP_004473346.1 KEGG: ppr:PBPRA3032 hypothetical protein YP_004473347.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: psb:Psyr_4649 GCN5-related N-acetyltransferase YP_004473348.1 PFAM: phosphate transporter; KEGG: pap:PSPA7_4859 phosphate transporter YP_004473349.1 KEGG: pst:PSPTO_3505 cytochrome b561 YP_004473350.1 KEGG: pfo:Pfl01_3355 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004473351.1 KEGG: ppf:Pput_3039 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004473352.1 KEGG: pfo:Pfl01_3353 hypothetical protein YP_004473353.1 KEGG: ppf:Pput_3041 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004473354.1 KEGG: pfo:Pfl01_3351 TenA family transcription regulator YP_004473355.1 KEGG: ppu:PP_2709 long-chain-fatty-acid--CoA ligase, PFAM: AMP-dependent synthetase/ligase YP_004473356.1 KEGG: ppw:PputW619_3314 hypothetical protein YP_004473357.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pfs:PFLU3308 TetR family transcriptional regulator YP_004473358.1 KEGG: pfs:PFLU3311 hydrolase; PFAM: beta-lactamase-related YP_004473359.1 KEGG: pfs:PFLU3310 hypothetical protein YP_004473360.1 KEGG: pst:PSPTO_3575 hypothetical protein YP_004473361.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppf:Pput_3186 major facilitator transporter YP_004473362.1 KEGG: oan:Oant_2938 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004473363.1 KEGG: reh:H16_B1435 IclR family transcriptional regulator; PFAM: transcription regulator IclR, N-terminal; transcription regulator IclR, C-terminal; SMART: transcription regulator IclR, N-terminal YP_004473364.1 PFAM: Crotonase, core; KEGG: bpt:Bpet4719 enoyl-CoA hydratase YP_004473365.1 KEGG: vap:Vapar_6147 CoA-binding domain protein; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding YP_004473366.1 PFAM: ABC transporter-like; KEGG: mes:Meso_2961 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004473367.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_2962 binding-protein-dependent transport systems inner membrane component YP_004473368.1 KEGG: mes:Meso_2964 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like YP_004473369.1 PFAM: Outer membrane porin, bacterial; KEGG: pau:PA14_54520 porin YP_004473370.1 KEGG: rce:RC1_0547 peroxisomal bifunctional enzyme; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004473371.1 TIGRFAM: beta-ketoadipyl CoA thiolase; Thiolase; KEGG: pag:PLES_02251 beta-ketoadipyl CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004473372.1 KEGG: pau:PA14_32450 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473373.1 PFAM: Cupin 2, conserved barrel; KEGG: pfl:PFL_5198 hypothetical protein YP_004473374.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pfo:Pfl01_2677 extracellular solute-binding protein YP_004473375.1 PFAM: Domain of unknown function DUF861, cupin-3; KEGG: ppu:PP_0874 hypothetical protein YP_004473376.1 PFAM: FAD dependent oxidoreductase; KEGG: pap:PSPA7_1702 hypothetical protein YP_004473377.1 KEGG: pmy:Pmen_2152 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473378.1 PFAM: methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: Cobalamin-independent methionine synthase; HAMAP: Cobalamin-independent methionine synthase; KEGG: pae:PA1927 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YP_004473379.1 PFAM: Isochorismatase-like; KEGG: ppg:PputGB1_1856 isochorismatase hydrolase YP_004473380.1 KEGG: pfo:Pfl01_5041 transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473381.1 PFAM: protein of unknown function DUF1028; KEGG: pmy:Pmen_3267 hypothetical protein YP_004473382.1 KEGG: avn:Avin_10480 ECF sigma factor, FecI family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004473383.1 PFAM: FecR protein; KEGG: pfs:PFLU1047 transmembrane sensor protein YP_004473384.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: pau:PA14_01870 TonB-dependent receptor; SMART: Secretin/TonB, short N-terminal YP_004473385.1 TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; KEGG: pmy:Pmen_3265 fumarase; PFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YP_004473386.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_3264 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004473387.1 PFAM: ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; KEGG: pmy:Pmen_3263 hypothetical protein YP_004473388.1 TIGRFAM: Pyruvate kinase; KEGG: pfl:PFL_4797 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like YP_004473389.1 PFAM: UspA; KEGG: avn:Avin_38400 universal stress protein family YP_004473390.1 KEGG: pmy:Pmen_3258 hypothetical protein YP_004473391.1 KEGG: pmy:Pmen_3257 hypothetical protein YP_004473392.1 PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_3256 type IV pilus assembly PilZ YP_004473393.1 PFAM: 4Fe-4S binding domain; KEGG: pmy:Pmen_3019 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004473394.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: pae:PA3620 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp YP_004473395.1 KEGG: pmy:Pmen_3016 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004473396.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: psa:PST_1508 recombinase A; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004473397.1 KEGG: pmy:Pmen_3014 recombination regulator RecX; HAMAP: Regulatory protein RecX; PFAM: Regulatory protein RecX YP_004473398.1 PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; KEGG: pap:PSPA7_1525 hypothetical protein YP_004473399.1 KEGG: avn:Avin_38510 hypothetical protein YP_004473400.1 PFAM: DTW; KEGG: pfl:PFL_1236 DTW domain-containing protein YP_004473401.1 PFAM: Drug/metabolite transporter; KEGG: pmy:Pmen_1290 hypothetical protein YP_004473402.1 KEGG: pfl:PFL_1238 LuxR family DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004473403.1 KEGG: pfo:Pfl01_1183 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic YP_004473404.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfo:Pfl01_1184 LysR family transcriptional regulator YP_004473405.1 KEGG: ppf:Pput_4079 oxidoreductase FAD/NAD(P)-binding subunit; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain YP_004473406.1 KEGG: pmy:Pmen_3349 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004473407.1 PFAM: BFD-like [2Fe-2S]-binding domain; KEGG: pst:PSPTO_4159 bacterioferritin-associated ferredoxin YP_004473408.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; KEGG: eta:ETA_19320 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding YP_004473409.1 SMART: Exonuclease; TIGRFAM: ribonuclease T; KEGG: pfo:Pfl01_4520 ribonuclease T; HAMAP: ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004473410.1 PFAM: Amidohydrolase 1; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase homodimeric type; KEGG: pen:PSEEN1208 dihydroorotase YP_004473411.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pmy:Pmen_1393 OmpA/MotB domain-containing protein YP_004473412.1 PFAM: argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; HAMAP: argininosuccinate synthase; KEGG: pmy:Pmen_1394 argininosuccinate synthase YP_004473413.1 PFAM: HopJ type III effector protein; KEGG: pmy:Pmen_3292 hypothetical protein YP_004473414.1 PFAM: protein of unknown function DUF1244; KEGG: psa:PST_1134 hypothetical protein YP_004473415.1 TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: pmy:Pmen_3290 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; SMART: Dihydroneopterin aldolase YP_004473416.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: pap:PSPA7_1690 GTP cyclohydrolase I YP_004473417.1 KEGG: pfs:PFLU5157 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473418.1 KEGG: pmy:Pmen_3287 antibiotic biosynthesis monooxygenase YP_004473419.1 KEGG: pmy:Pmen_3286 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004473420.1 PFAM: Type IV pilus assembly PilZ; KEGG: pfs:PFLU5154 hypothetical protein YP_004473421.1 TIGRFAM: PAS; PFAM: PAS fold; KEGG: pfl:PFL_0954 sensory box protein; SMART: PAC motif; PAS YP_004473422.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: pap:PSPA7_1692 flavodoxin YP_004473423.1 KEGG: rca:Rcas_2128 protein serine/threonine phosphatase YP_004473424.1 KEGG: pfl:PFL_4639 sigma-54 dependent transcriptional regulator TyrR, PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; SMART: ATPase, AAA+ type, core; PAS YP_004473425.1 TIGRFAM: Malonate decarboxylase, alpha subunit; KEGG: psa:PST_4120 malonate decarboxylase alpha subunit YP_004473426.1 PFAM: Triphosphoribosyl-dephospho-CoA protein; TIGRFAM: Triphosphoribosyl-dephospho-CoA synthas, MdcB; HAMAP: Triphosphoribosyl-dephospho-CoA protein; KEGG: psa:PST_4119 triphosphoribosyl-dephospho-CoA synthase YP_004473427.1 TIGRFAM: Malonate decarboxylase delta subunit; HAMAP: Malonate decarboxylase acyl carrier protein; KEGG: psa:PST_4118 malonate decarboxylase subunit delta; PFAM: Malonate decarboxylase delta subunit YP_004473428.1 KEGG: psa:PST_4117 malonate decarboxylase subunit beta; TIGRFAM: Malonate decarboxylase, beta subunit; PFAM: Carboxyl transferase YP_004473429.1 KEGG: psp:PSPPH_0437 malonate decarboxylase, gamma subunit; TIGRFAM: Malonate decarboxylase gamma subunit; PFAM: Malonate decarboxylase gamma subunit YP_004473430.1 PFAM: Holo-ACP synthase, malonate decarboxylase-specific; TIGRFAM: Holo-ACP synthase, malonate decarboxylase-specific; KEGG: psa:PST_4115 phosphoribosyl-dephospho-CoA transferase; HAMAP: phosphoribosyl-dephospho-CoA transferase YP_004473431.1 SMART: polyketide synthase, acyl transferase domain; TIGRFAM: Malonate decarboxylase, epsilon subunit; KEGG: avn:Avin_10340 acyl-carrier-protein S-malonyltransferase; PFAM: acyl transferase YP_004473432.1 PFAM: Dicarboxylate carrier MatC N-terminal; KEGG: sml:Smlt1225 transmembrane dicarboxylate carrier protein YP_004473433.1 KEGG: ppw:PputW619_2876 malonate transporter MadL subunit; TIGRFAM: Malonate transporter MadL subunit; PFAM: Malonate transporter MadL subunit YP_004473434.1 KEGG: psa:PST_4112 malonate transporter MadM subunit; TIGRFAM: Malonate/sodium symporter MadM subunit; PFAM: Malonate/sodium symporter MadM subunit, N-terminal YP_004473435.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_5811 malonate utilization transcriptional regulator YP_004473436.1 KEGG: pmy:Pmen_2628 hypothetical protein YP_004473437.1 PFAM: ABC transporter-like; KEGG: psa:PST_3929 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004473438.1 PFAM: ABC transporter; KEGG: nve:NEMVE_v1g225816 hypothetical protein YP_004473439.1 PFAM: NUDIX hydrolase domain; KEGG: pmy:Pmen_3409 NUDIX hydrolase YP_004473440.1 KEGG: pfl:PFL_1086 anhydrase 3 protein YP_004473441.1 PFAM: protein of unknown function DUF1289; KEGG: pfl:PFL_1087 hypothetical protein YP_004473442.1 KEGG: pmy:Pmen_1452 membrane protein-like protein YP_004473443.1 PFAM: protein of unknown function DUF488; KEGG: pmy:Pmen_3243 hypothetical protein YP_004473444.1 PFAM: NIPSNAP; KEGG: vap:Vapar_2502 NIPSNAP family containing protein YP_004473445.1 KEGG: mfa:Mfla_2622 major facilitator transporter YP_004473446.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_3489 LysR family transcriptional regulator YP_004473447.1 PFAM: transmembrane pair, bacterial; KEGG: pmy:Pmen_3488 hypothetical protein YP_004473448.1 KEGG: psa:PST_3009 sugar ABC transporter ATPase component YP_004473449.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: pmy:Pmen_3486 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core YP_004473450.1 PFAM: GMP synthase, C-terminal; glutamine amidotransferase class-I, C-terminal; tRNA-specific 2-thiouridylase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase; KEGG: ppw:PputW619_4193 GMP synthase YP_004473451.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: psb:Psyr_2711 GGDEF; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004473452.1 PFAM: Uncharacterised protein family UPF0126; KEGG: ddd:Dda3937_04047 hypothetical protein YP_004473453.1 PFAM: protein of unknown function DUF1486; KEGG: amd:AMED_6462 probable ketosteroid isomerase-related protein YP_004473454.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: avn:Avin_35780 TetR family regulatory protein YP_004473455.1 PFAM: Flavodoxin-like fold; KEGG: rru:Rru_A3066 NAD(P)H dehydrogenase (quinone) YP_004473456.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pap:PSPA7_5394 ferric iron-binding periplasmic protein HitA YP_004473457.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA4688 iron (III)-transport system permease HitB YP_004473458.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: pmy:Pmen_3418 multicopper oxidase, type 3 YP_004473459.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pfo:Pfl01_4584 tRNA-adenosine deaminase YP_004473460.1 KEGG: pmy:Pmen_3416 hypothetical protein YP_004473461.1 KEGG: pmy:Pmen_1111 hypothetical protein YP_004473462.1 KEGG: hel:HELO_2844 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473463.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cak:Caul_3238 LysR family transcriptional regulator YP_004473464.1 HAMAP: Membrane-bound lytic murein transglycosylase F; PFAM: Lytic transglycosylase-like, catalytic; Extracellular solute-binding protein, family 3; KEGG: pfs:PFLU5035 transglycosylase; SMART: Extracellular solute-binding protein, family 3 YP_004473465.1 PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; TIGRFAM: phosphoribosylformylglycinamidine synthase; HAMAP: phosphoribosylformylglycinamidine synthase, bacterial; KEGG: pfl:PFL_1076 phosphoribosylformylglycinamidine synthase YP_004473466.1 KEGG: avn:Avin_39650 hypothetical protein YP_004473467.1 PFAM: YkuD domain; KEGG: pmy:Pmen_3411 hypothetical protein YP_004473468.1 PFAM: Pirin, N-terminal; KEGG: pfs:PFLU3711 hypothetical protein YP_004473469.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pst:PSPTO_1787 LysR family transcriptional regulator YP_004473470.1 KEGG: avn:Avin_40190 aminotransferase; PFAM: Aminotransferase, class I/classII YP_004473471.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_3494 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004473472.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: psa:PST_3017 oxidoreductase, zinc-binding; SMART: polyketide synthase, enoylreductase YP_004473473.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pst:PSPTO_2903 LysR family transcriptional regulator YP_004473474.1 KEGG: pmy:Pmen_0341 L-glutamine synthetase; PFAM: glutamine synthetase, catalytic domain YP_004473475.1 PFAM: Aldehyde dehydrogenase domain; KEGG: psa:PST_0046 aldehyde dehydrogenase YP_004473476.1 PFAM: FAD dependent oxidoreductase; KEGG: pfo:Pfl01_1909 FAD dependent oxidoreductase YP_004473477.1 KEGG: psb:Psyr_2706 glutamine amidotransferase; PFAM: peptidase C26 YP_004473478.1 PFAM: Amino acid permease domain; KEGG: pen:PSEEN5442 amino acid transporter YP_004473479.1 KEGG: pmy:Pmen_3492 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: Yeast 2-isopropylmalate synthase; HAMAP: 2-isopropylmalate synthase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004473480.1 PFAM: Mechanosensitive ion channel MscS; KEGG: psa:PST_3013 mechanosensitive ion channel family protein YP_004473481.1 PFAM: glutathione S-transferase, N-terminal; glutathione S-transferase, C-terminal; KEGG: rcu:RCOM_1911620 glutathione s-transferase YP_004473482.1 PFAM: peptidase M23; KEGG: pmy:Pmen_3491 peptidase M23B YP_004473483.1 TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: pfo:Pfl01_4592 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; nucleic acid binding, OB-fold, tRNA/helicase-type YP_004473484.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfo:Pfl01_2782 LysR family transcriptional regulator YP_004473485.1 KEGG: pfo:Pfl01_2783 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004473486.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_1530 major facilitator transporter YP_004473487.1 manually curated; KEGG: gpb:HDN1F_33590 hypothetical protein YP_004473488.1 KEGG: rlg:Rleg_3962 hypothetical protein YP_004473489.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; methylthiotransferase; KEGG: pau:PA14_52420 ribosomal protein S12 methylthiotransferase; HAMAP: ribosomal protein S12 methylthiotransferase RimO; PFAM: methylthiotransferase, N-terminal; Radical SAM YP_004473490.1 KEGG: pst:PSPTO_4018 hypothetical protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004473491.1 KEGG: pst:PSPTO_4011 hypothetical protein YP_004473492.1 KEGG: cyh:Cyan8802_4097 hypothetical protein YP_004473493.1 PFAM: C-5 cytosine methyltransferase; KEGG: hch:HCH_02855 site-specific DNA methylase YP_004473494.1 KEGG: tko:TK2253 hypothetical protein YP_004473495.1 KEGG: pmy:Pmen_3991 hypothetical protein YP_004473496.1 KEGG: hch:HCH_00790 DHH family phosphohydrolase YP_004473497.1 KEGG: afm:AFUA_5G03390 hypothetical protein YP_004473498.1 PFAM: protein of unknown function DUF2303; KEGG: psb:Psyr_2839 hypothetical protein YP_004473499.1 KEGG: psb:Psyr_2838 hypothetical protein YP_004473500.1 KEGG: abc:ACICU_02772 hypothetical protein YP_004473501.1 KEGG: rmr:Rmar_0054 molybdate ABC transporter ATPase subunit YP_004473502.1 KEGG: pmy:Pmen_3986 hypothetical protein YP_004473503.1 KEGG: hdn:Hden_3112 ATPase, FliI/YscN family YP_004473504.1 KEGG: ngr:NAEGRDRAFT_58423 hypothetical protein YP_004473505.1 KEGG: shw:Sputw3181_0928 hypothetical protein YP_004473506.1 KEGG: hel:HELO_2105 phage repressor; PFAM: peptidase S24/S26A/S26B, conserved region; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004473507.1 KEGG: apt:APA01_21880 transcriptional regulator YP_004473508.1 manually curated; KEGG: ppg:PputGB1_1190 hypothetical protein YP_004473509.1 TIGRFAM: Zinc finger, C4 DksA/TraR-type; KEGG: dda:Dd703_2085 TraR/DksA family transcriptional regulator YP_004473511.1 KEGG: ajs:Ajs_4313 hypothetical protein YP_004473512.1 KEGG: ppg:PputGB1_1191 bifunctional DNA primase/polymerase; PFAM: DNA primase/polymerase, bifunctional, N-terminal; SMART: DNA primase/polymerase, bifunctional, N-terminal YP_004473513.1 KEGG: psp:PSPPH_0654 hypothetical protein YP_004473514.1 KEGG: bte:BTH_II1345 hypothetical protein YP_004473515.1 PFAM: protein of unknown function DUF754; KEGG: pag:PLES_25321 hypothetical protein YP_004473516.1 manually curated; KEGG: pag:PLES_13491 hypothetical protein YP_004473517.1 KEGG: pst:PSPTO_3413 hypothetical protein YP_004473518.1 PFAM: Phage terminase GpA; KEGG: pst:PSPTO_3412 terminase, large subunit YP_004473519.1 KEGG: bgl:bglu_1g04710 preprotein translocase subunit SecA YP_004473520.1 KEGG: pfl:PFL_1995 portal protein lambda family; TIGRFAM: Phage portal protein, lambda; PFAM: Phage portal protein, lambda YP_004473521.1 PFAM: peptidase S14, ClpP; KEGG: ppu:PP_3045 ClpP protease YP_004473522.1 KEGG: mno:Mnod_2459 hypothetical protein YP_004473523.1 KEGG: ppg:PputGB1_1200 hypothetical protein YP_004473524.1 KEGG: mmr:Mmar10_2112 hypothetical protein YP_004473525.1 KEGG: cko:CKO_03666 N-acetylmuramoyl-L-alanine amidase II YP_004473526.1 KEGG: sma:SAV_2805 glycogen branching enzyme YP_004473527.1 KEGG: sfr:Sfri_1683 hypothetical protein YP_004473528.1 KEGG: bmu:Bmul_3845 hypothetical protein YP_004473529.1 KEGG: tau:Tola_0749 phage tape measure protein YP_004473530.1 KEGG: nhl:Nhal_1009 hypothetical protein YP_004473531.1 KEGG: rsl:RPSI07_0259 hypothetical protein YP_004473532.1 KEGG: cre:CHLREDRAFT_181880 nuclear ribonucleoprotein YP_004473533.1 KEGG: rlt:Rleg2_1975 apolipoprotein A1/A4/E YP_004473534.1 KEGG: rso:RSc0879 hypothetical protein YP_004473535.1 KEGG: nhl:Nhal_1015 hypothetical protein YP_004473537.1 KEGG: pag:PLES_55771 hypothetical protein YP_004473538.1 KEGG: bbr:BB1714 hypothetical protein YP_004473539.1 KEGG: ppw:PputW619_3920 hypothetical protein YP_004473540.1 KEGG: ppw:PputW619_3919 lipoprotein YP_004473541.1 KEGG: mms:mma_0600 D-alanyl-D-alanine carboxypeptidase YP_004473542.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: psp:PSPPH_1883 prophage PSPPH02, adenine modification methytransferase YP_004473543.1 KEGG: pmy:Pmen_3949 hypothetical protein YP_004473544.1 PFAM: protein of unknown function DUF159; KEGG: psa:PST_3356 hypothetical protein YP_004473545.1 PFAM: peptidase S24/S26A/S26B, conserved region; KEGG: ppf:Pput_5031 prophage repressor YP_004473546.1 KEGG: ppf:Pput_5030 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004473547.1 manually curated; KEGG: mta:Moth_0672 protein translocase subunit SecB YP_004473548.1 KEGG: bmy:Bm1_07975 gene cp2.2 YP_004473549.1 PFAM: Short chain fatty acid transporter; KEGG: psa:PST_0863 short-chain fatty acid transporter family protein YP_004473550.1 PFAM: Bacterial virulence; KEGG: pau:PA14_52370 hypothetical protein YP_004473551.1 KEGG: pag:PLES_43961 hypothetical protein YP_004473552.1 HAMAP: DNA polymerase IV; KEGG: pmy:Pmen_1726 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like YP_004473553.1 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: pfl:PFL_4454 hypothetical protein YP_004473554.1 KEGG: pmy:Pmen_1728 hypothetical protein YP_004473555.1 PFAM: Haem oxygenase-like; KEGG: ppu:PP_2582 heme oxygenase YP_004473556.1 KEGG: pmy:Pmen_1730 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_004473557.1 KEGG: pmy:Pmen_1731 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004473558.1 KEGG: pmy:Pmen_1732 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004473559.1 KEGG: avn:Avin_37010 outer membrane receptor FepA; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004473560.1 PFAM: methyltransferase regulatory domain, predicted; methyltransferase type 12; KEGG: avn:Avin_37000 SAM-dependent methyltransferase YP_004473561.1 PFAM: esterase; KEGG: rce:RC1_0332 hypothetical protein YP_004473562.1 PFAM: substrate-binding protein; KEGG: hel:HELO_3347 ABC-type transport system substrate-binding protein YP_004473563.1 PFAM: ABC transporter permease; KEGG: hel:HELO_3346 ABC-type ABC transporter permease YP_004473564.1 PFAM: ABC transporter permease; KEGG: hau:Haur_1808 ABC transporter permease YP_004473565.1 PFAM: ABC transporter-like; KEGG: hel:HELO_3344 ABC-type transport system ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004473566.1 TIGRFAM: Cysteine synthase B; Cysteine synthase K/M; KEGG: psa:PST_2671 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004473567.1 TIGRFAM: 23S rRNA methyltransferase/RumA; HAMAP: 23S rRNA methyltransferase/RumA; KEGG: pmy:Pmen_1734 23S rRNA 5-methyluridine methyltransferase; PFAM: Deoxyribonuclease/rho motif-related TRAM; methyltransferase type 11 YP_004473568.1 SMART: RelA/SpoT; TIGRFAM: RelA/SpoT protein; KEGG: pmy:Pmen_1735 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT YP_004473569.1 KEGG: pmy:Pmen_1736 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, catalytic core YP_004473570.1 PFAM: protein of unknown function DUF2058; KEGG: avn:Avin_36940 hypothetical protein YP_004473571.1 KEGG: psp:PSPPH_3713 hypothetical protein YP_004473572.1 KEGG: pmy:Pmen_2998 hypothetical protein YP_004473573.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; KEGG: pfs:PFLU4500 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase, N-terminal YP_004473574.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ppg:PputGB1_1263 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein YP_004473575.1 PFAM: protein of unknown function DUF2066; KEGG: pmy:Pmen_2995 hypothetical protein YP_004473576.1 PFAM: Uncharacterised protein family UPF0118; KEGG: pen:PSEEN1372 permease YP_004473577.1 KEGG: pmy:Pmen_2993 DNA replication initiation factor; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda) YP_004473578.1 PFAM: protein of unknown function DUF2069, membrane; KEGG: psa:PST_2827 hypothetical protein YP_004473579.1 KEGG: pmy:Pmen_2990 flavodoxin/nitric oxide synthase; TIGRFAM: Flavoprotein WrbA; PFAM: Flavodoxin/nitric oxide synthase YP_004473580.1 KEGG: avn:Avin_36820 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like YP_004473581.1 TIGRFAM: ribonuclease BN; HAMAP: UPF0761 membrane protein yihY; KEGG: pmy:Pmen_2988 tRNA-processing RNAse BN; PFAM: ribonuclease BN-related YP_004473582.1 KEGG: pap:PSPA7_4557 hypothetical protein YP_004473583.1 KEGG: pmy:Pmen_2986 hypothetical protein YP_004473584.1 KEGG: pmy:Pmen_2985 type IV pilus assembly PilZ YP_004473585.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: avn:Avin_36790 thioredoxin YP_004473586.1 KEGG: pap:PSPA7_4554 acylphosphatase; HAMAP: acylphosphatase; PFAM: acylphosphatase-like YP_004473587.1 KEGG: pfo:Pfl01_1196 lipoprotein YP_004473588.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; KEGG: pfo:Pfl01_1197 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding YP_004473589.1 PFAM: Outer membrane porin, bacterial; KEGG: psa:PST_2818 outer membrane protein OprE3 YP_004473590.1 PFAM: histidine triad (HIT) protein; KEGG: pau:PA14_51860 hypothetical protein YP_004473591.1 KEGG: psa:PST_2816 hypothetical protein; HAMAP: SlyX; PFAM: SlyX YP_004473592.1 manually curated; KEGG: pst:PSPTO_4510 ISPsy11, transposase OrfA YP_004473593.1 KEGG: pfo:Pfl01_4415 cold-shock DNA-binding protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004473594.1 PFAM: Ferritin/Dps protein; KEGG: pmy:Pmen_1265 ferritin, Dps family protein YP_004473595.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: pmy:Pmen_1268 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004473596.1 TIGRFAM: protein of unknown function DUF28; HAMAP: protein of unknown function DUF28; KEGG: pmy:Pmen_1269 hypothetical protein; PFAM: protein of unknown function DUF28 YP_004473597.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: pmy:Pmen_1270 Holliday junction resolvase YP_004473598.1 SMART: Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Bacterial DNA recombination protein RuvA; KEGG: pmy:Pmen_1271 Holliday junction DNA helicase RuvA; HAMAP: Bacterial DNA recombination protein RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004473599.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: psa:PST_2808 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004473600.1 KEGG: pmy:Pmen_1273 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004473601.1 KEGG: pmy:Pmen_1274 MotA/TolQ/ExbB proton channel; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004473602.1 KEGG: pmy:Pmen_1275 biopolymer transport protein ExbD/TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_004473603.1 KEGG: pau:PA14_51730 TolA protein; TIGRFAM: Tol-Pal system, TolA; TonB, C-terminal; PFAM: Tol-Pal system, TolA YP_004473604.1 TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: pmy:Pmen_1277 translocation protein TolB; PFAM: TolB, N-terminal; WD40-like beta Propeller YP_004473605.1 KEGG: pmy:Pmen_1278 OmpA domain-containing protein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_004473606.1 TIGRFAM: Tol-Pal system, YbgF; KEGG: pmy:Pmen_1279 hypothetical protein YP_004473607.1 PFAM: Radical SAM; KEGG: pmy:Pmen_1280 radical SAM domain-containing protein YP_004473608.1 KEGG: pmy:Pmen_1281 ExsB protein; TIGRFAM: Queuosine synthesis; PFAM: Queuosine synthesis YP_004473609.1 TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: pfl:PFL_2530 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004473610.1 PFAM: Quinolinate synthetase A; TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: pag:PLES_43211 quinolinate synthetase YP_004473611.1 PFAM: peptidase M48; KEGG: nve:NEMVE_v1g224304 hypothetical protein YP_004473612.1 PFAM: SirA-like; KEGG: nve:NEMVE_v1g151714 hypothetical protein YP_004473613.1 PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: ppu:PP_1235 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004473614.1 KEGG: pmy:Pmen_1662 glycine cleavage system regulatory protein-like protein YP_004473615.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: pmy:Pmen_1663 dihydrodipicolinate synthase YP_004473616.1 KEGG: pmy:Pmen_1664 hypothetical protein YP_004473617.1 PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: SAICAR synthetase; KEGG: pmy:Pmen_1665 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004473618.1 KEGG: mca:MCA1615 resolvase site-specific recombinase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix domain; SMART: Resolvase, N-terminal YP_004473619.1 KEGG: mbu:Mbur_1752 hypothetical protein YP_004473620.1 manually curated; KEGG: hch:HCH_04115 hypothetical protein YP_004473621.1 KEGG: psa:PST_1242 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase domain YP_004473622.1 KEGG: psa:PST_1246 sodium/proline symporter PutP; TIGRFAM: Sodium/proline symporter; Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004473623.1 PFAM: protein of unknown function DUF2132; KEGG: pfs:PFLU1087A hypothetical protein YP_004473624.1 KEGG: pmy:Pmen_1253 membrane carboxypeptidase (penicillin-binding protein)-like protein YP_004473625.1 KEGG: pfo:Pfl01_3732 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004473626.1 HAMAP: RNA polymerase-associated protein rapA; PFAM: SNF2-related; Helicase, C-terminal; KEGG: pmy:Pmen_1485 ATP-dependent helicase HepA; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004473627.1 KEGG: psa:PST_2968 aspartate-semialdehyde dehydrogenase YP_004473628.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: pmy:Pmen_1487 DNA-N1-methyladenine dioxygenase YP_004473629.1 KEGG: pmy:Pmen_1488 hypothetical protein YP_004473630.1 KEGG: pfo:Pfl01_1261 hypothetical protein YP_004473631.1 PFAM: Fusaric acid resistance protein, conserved region; KEGG: pmy:Pmen_1490 fusaric acid resistance protein region YP_004473632.1 PFAM: protein AaeX; KEGG: pmy:Pmen_1491 hypothetical protein YP_004473633.1 PFAM: Secretion protein HlyD; KEGG: pmy:Pmen_1492 hemolysin D YP_004473634.1 KEGG: psa:PST_3570 cytosine deaminase; PFAM: Amidohydrolase 3 YP_004473635.1 PFAM: Purine catabolism PurC-like; Helix-turn-helix, Fis-type; KEGG: pfs:PFLU2110 hypothetical protein YP_004473636.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: psa:PST_3569 cytosine permease YP_004473637.1 PFAM: Domain of unknown function DUF1993; KEGG: pag:PLES_00561 hypothetical protein YP_004473638.1 manually curated; KEGG: psa:PST_1428 lipoprotein YP_004473639.1 PFAM: MaoC-like dehydratase; KEGG: psp:PSPPH_1425 MaoC-like domain-containing protein YP_004473640.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_1494 alpha/beta hydrolase fold YP_004473641.1 KEGG: pmy:Pmen_1495 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004473642.1 KEGG: psa:PST_2960 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004473643.1 PFAM: UV-endonuclease UvdE; KEGG: pfs:PFLU3430 hypothetical protein YP_004473644.1 KEGG: psb:Psyr_0692 binding-protein dependent transport system inner membrane protein; TIGRFAM: phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004473645.1 KEGG: psp:PSPPH_0704 phosphonate ABC transporter permease, TIGRFAM: phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004473646.1 PFAM: ABC transporter-like; KEGG: pst:PSPTO_0790 phosphonate ABC transporter ATP-binding protein, SMART: ATPase, AAA+ type, core YP_004473647.1 KEGG: psb:Psyr_0695 extracellular solute-binding protein; TIGRFAM: phosphonate-binding periplasmic protein; SMART: Extracellular solute-binding protein, family 3 YP_004473648.1 TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase, class I; KEGG: pst:PSPTO_0793 selenide, water dikinase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal YP_004473649.1 TIGRFAM: tRNA 2-selenouridine synthase; HAMAP: tRNA 2-selenouridine synthase; KEGG: pst:PSPTO_0794 hypothetical protein; SMART: Rhodanese-like YP_004473650.1 KEGG: psa:PST_1052 transposase and inactivated derivative YP_004473651.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_1497 major facilitator transporter YP_004473652.1 PFAM: Drug/metabolite transporter; KEGG: pmy:Pmen_1498 hypothetical protein YP_004473653.1 KEGG: pmy:Pmen_1499 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004473654.1 KEGG: maq:Maqu_1071 hypothetical protein YP_004473655.1 KEGG: vcj:VCD_000865 hypothetical protein YP_004473656.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppf:Pput_3183 LysR family transcriptional regulator YP_004473657.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_1505 major facilitator transporter YP_004473658.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: bpt:Bpet3144 hypothetical protein YP_004473659.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bpt:Bpet3143 LysR family transcriptional regulator YP_004473660.1 KEGG: xcv:XCV2949 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004473661.1 PFAM: Fatty acid desaturase, type 1; KEGG: hch:HCH_03146 fatty-acid desaturase YP_004473662.1 KEGG: pen:PSEEN0749 hypothetical protein YP_004473663.1 KEGG: hch:HCH_01452 hypothetical protein YP_004473664.1 KEGG: pla:Plav_3606 two component LuxR family transcriptional regulator; PFAM: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004473665.1 KEGG: pst:PSPTO_0896 sensor histidine kinase/response regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004473666.1 KEGG: ppg:PputGB1_1789 ProQ activator of osmoprotectant transporter ProP; PFAM: Fertility inhibition FinO/ProQ; SMART: Fertility inhibition FinO/ProQ YP_004473667.1 KEGG: rlt:Rleg2_4716 AraC family transcriptional regulator YP_004473668.1 KEGG: rpb:RPB_0738 cobaltochelatase subunit CobN YP_004473669.1 KEGG: ppf:Pput_3416 hypothetical protein YP_004473670.1 KEGG: pag:PLES_14361 transcriptional regulator; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004473671.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pau:PA14_17730 hypothetical protein YP_004473672.1 PFAM: Amino acid permease domain; KEGG: pfo:Pfl01_4556 amino acid permease-associated region YP_004473673.1 KEGG: cth:Cthe_1113 SecC motif-containing protein YP_004473674.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Domain of unknown function DUF1605; Helicase-associated domain; Helicase, C-terminal; KEGG: pmy:Pmen_1511 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal YP_004473675.1 PFAM: beta-lactamase-related; KEGG: pfl:PFL_2775 beta-lactamase YP_004473676.1 KEGG: ara:Arad_4428 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YP_004473677.1 KEGG: ppu:PP_2240 ABC transporter; PFAM: ABC transporter N-terminal; ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004473678.1 KEGG: psa:PST_0346 molybdopterin oxidoreductase, alpha subunit; TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase YP_004473679.1 KEGG: pen:PSEEN2760 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004473680.1 PFAM: peptidase S14, ClpP; KEGG: pmy:Pmen_2263 peptidase S14, ClpP YP_004473681.1 KEGG: psb:Psyr_2386 hypothetical protein YP_004473682.1 KEGG: rpi:Rpic_0253 tetratricopeptide TPR_2 repeat protein YP_004473683.1 KEGG: psa:PST_1990 hypothetical protein YP_004473684.1 KEGG: pmy:Pmen_2271 hypothetical protein YP_004473685.1 KEGG: pmy:Pmen_1649 hypothetical protein YP_004473686.1 KEGG: psp:PSPPH_2946 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473687.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: pol:Bpro_0435 mandelate racemase/muconate lactonizing enzyme; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004473688.1 KEGG: eca:ECA0997 LacI family transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; substrate-binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004473689.1 KEGG: pmy:Pmen_1541 nicotinamide mononucleotide transporter PnuC; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004473690.1 TIGRFAM: Cytidyltransferase-related; KEGG: pmy:Pmen_1542 NAD metabolism ATPase/kinase-like protein YP_004473691.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: pmy:Pmen_2300 alcohol dehydrogenase YP_004473692.1 KEGG: pmy:Pmen_1649 hypothetical protein YP_004473693.1 PFAM: protein of unknown function DUF892; KEGG: pag:PLES_31411 hypothetical protein YP_004473694.1 KEGG: pmy:Pmen_1648 hypothetical protein YP_004473695.1 PFAM: Copper chaperone SCO1/SenC; KEGG: pla:Plav_0014 classical-complement-pathway C3/C5 convertase YP_004473696.1 PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: rsq:Rsph17025_3120 hypothetical protein YP_004473697.1 KEGG: vcm:VCM66_A0216 hemolysin secretion protein HylB; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473698.1 KEGG: ret:RHE_CH02601 hypothetical protein YP_004473699.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: pfo:Pfl01_3133 anti-sigma-factor antagonist (STAS) YP_004473700.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: pfo:Pfl01_3134 anti-sigma-factor antagonist (STAS) YP_004473701.1 PFAM: ATPase-like, ATP-binding domain; KEGG: pfo:Pfl01_3135 anti-sigma-regulatory factor (Ser/Thr protein kinase) YP_004473702.1 KEGG: pfo:Pfl01_3136 anti-sigma-regulatory factor (Ser/Thr protein kinase and phosphatase); PFAM: Sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-like YP_004473703.1 KEGG: pfo:Pfl01_3137 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004473704.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: pfo:Pfl01_3138 multi-sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain YP_004473705.1 KEGG: psa:PST_1688 methyl-accepting chemotaxis transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473706.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; KEGG: psp:PSPPH_3276 sensory box sensor histidine kinase/response regulator; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain YP_004473707.1 PFAM: NUDIX hydrolase domain; KEGG: pst:PSPTO_2696 MutT/NUDIX family protein YP_004473708.1 PFAM: Uncharacterised protein family YphA; KEGG: bge:BC1002_4960 DoxX family protein YP_004473709.1 PFAM: Stress-induced protein, KGG, repeat; KEGG: psa:PST_3123 general stress protein YP_004473710.1 PFAM: protein of unknown function DUF1652; KEGG: pfl:PFL_3692 hypothetical protein YP_004473711.1 KEGG: psb:Psyr_4492 hypothetical protein YP_004473712.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; KEGG: pau:PA14_48160 sensor/response regulator hybrid; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif; Signal transduction response regulator, receiver domain YP_004473713.1 KEGG: pst:PSPTO_4543 GAF domain/GGDEF domain/EAL domain protein; PFAM: Diguanylate phosphodiesterase, EAL domain; GAF; SMART: Diguanylate phosphodiesterase, EAL domain; GAF; Diguanylate cyclase, predicted YP_004473714.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3129 amino acid transporter LysE YP_004473715.1 KEGG: cef:CE1974 amino acid permease; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004473716.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pfs:PFLU4283 hypothetical protein YP_004473717.1 PFAM: Helix-turn-helix, HxlR type; KEGG: avi:Avi_3780 transcriptional regulator protein YP_004473718.1 PFAM: Isochorismatase-like; KEGG: she:Shewmr4_1847 isochorismatase hydrolase YP_004473719.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: pfl:PFL_0772 sulfate permease YP_004473720.1 HAMAP: Uncharacterised protein family, TER reductase; KEGG: ppu:PP_4635 trans-2-enoyl-CoA reductase; PFAM: Uncharacterised protein family, TER reductase YP_004473721.1 KEGG: rpf:Rpic12D_4370 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal YP_004473722.1 PFAM: protein of unknown function DUF1090; KEGG: hel:HELO_2594 hypothetical protein YP_004473723.1 KEGG: pfs:PFLU2358 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473724.1 KEGG: pfs:PFLU2358 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473725.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pmy:Pmen_0124 extracellular solute-binding protein YP_004473726.1 PFAM: histone deacetylase superfamily; KEGG: pfs:PFLU6061 acetylpolyamine aminohydrolase YP_004473727.1 KEGG: ppg:PputGB1_5388 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473728.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: csa:Csal_0859 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA YP_004473729.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfl:PFL_6120 major facilitator family transporter YP_004473730.1 PFAM: histidine triad (HIT) protein; KEGG: pmy:Pmen_1532 histidine triad (HIT) protein YP_004473731.1 PFAM: Drug/metabolite transporter; KEGG: pfl:PFL_2522 hypothetical protein YP_004473732.1 manually curated; KEGG: pmy:Pmen_1534 hypothetical protein YP_004473733.1 PFAM: FAD dependent oxidoreductase; KEGG: pmy:Pmen_1535 monooxygenase, FAD-binding YP_004473734.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_1527 major facilitator transporter YP_004473735.1 KEGG: pmy:Pmen_1543 amino acid ABC transporter periplasmic protein YP_004473736.1 TIGRFAM: Peroxiredoxin; KEGG: pag:PLES_01401 alkyl hydroperoxide reductase subunit C; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal YP_004473737.1 TIGRFAM: Alkyl hydroperoxide reductase, subunit F; KEGG: pae:PA0140 alkyl hydroperoxide reductase subunit F; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004473738.1 KEGG: avn:Avin_17460 hypothetical protein YP_004473739.1 KEGG: pmy:Pmen_1338 peptidase M14, carboxypeptidase A; PFAM: peptidase M14, carboxypeptidase A; SMART: peptidase M14, carboxypeptidase A YP_004473740.1 KEGG: pag:PLES_33561 hypothetical protein YP_004473741.1 SMART: Helicase, ATP-dependent, c2 type; Helicase-like, DEXD box c2 type; KEGG: pmy:Pmen_4111 helicase C2 YP_004473742.1 PFAM: VRR-NUC; KEGG: pmy:Pmen_4110 hypothetical protein YP_004473743.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: pen:PSEEN2279 sensory box histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif YP_004473744.1 PFAM: Circadian clock protein KaiC/DNA repair protein RadA; KEGG: ppw:PputW619_3203 circadian clock protein, KaiC; SMART: ATPase, AAA+ type, core YP_004473745.1 KEGG: pen:PSEEN2281 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004473746.1 KEGG: msl:Msil_2780 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004473747.1 PFAM: Nitroreductase-like; KEGG: sse:Ssed_2982 nitroreductase-like protein YP_004473748.1 PFAM: polysaccharide biosynthesis protein; KEGG: mmh:Mmah_0083 polysaccharide biosynthesis protein YP_004473749.1 KEGG: sse:Ssed_2981 hypothetical protein YP_004473750.1 PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: pha:PSHAa1786 glycosyl transferase, WecB/TagA/CpsF YP_004473751.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: pfs:PFLU3664 mannose-1-phosphate guanylyltransferase; PFAM: nucleotidyl transferase; Mannose-6-phosphate isomerase, type II, C-terminal YP_004473752.1 KEGG: psa:PST_2500 N-acetyl-mannosamine transferase; TIGRFAM: glycosyl transferase WecB/TagA/CpsF; PFAM: glycosyl transferase WecB/TagA/CpsF YP_004473753.1 PFAM: glycosyl transferase, family 2; KEGG: gym:GYMC10_5336 glycosyl transferase 2 YP_004473754.1 KEGG: psa:PST_2498 hypothetical protein YP_004473755.1 PFAM: NUDIX hydrolase domain; KEGG: pfs:PFLU3665 GDP-mannose mannosyl hydrolase YP_004473756.1 KEGG: hba:Hbal_1798 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004473757.1 TIGRFAM: GDP-mannose 4,6-dehydratase; KEGG: gca:Galf_1273 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004473758.1 PFAM: glycosyl transferase, family 2; KEGG: pdi:BDI_3823 glycosyltransferase YP_004473759.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: pca:Pcar_1806 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004473760.1 TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; KEGG: pfo:Pfl01_2816 sugar transferase; PFAM: Bacterial sugar transferase YP_004473762.1 KEGG: mca:MCA1179 capsular polysaccharide biosynthesis protein, PFAM: PHP, C-terminal YP_004473763.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: pfo:Pfl01_2815 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis YP_004473764.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: pfo:Pfl01_2814 polysaccharide export protein YP_004473765.1 PFAM: protein of unknown function DUF2320; KEGG: pfo:Pfl01_2813 hypothetical protein YP_004473766.1 KEGG: avn:Avin_39750 D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004473767.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: ppf:Pput_4305 hypothetical protein YP_004473768.1 KEGG: psb:Psyr_3967 membrane protein TctB YP_004473769.1 KEGG: psa:PST_4040 tricarboxylate transport protein TctC YP_004473770.1 PFAM: Outer membrane porin, bacterial; KEGG: pap:PSPA7_4765 porin YP_004473771.1 PFAM: PrpF protein; KEGG: pfl:PFL_2497 hypothetical protein YP_004473772.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_2496 LysR family transcriptional regulator YP_004473773.1 PFAM: PrpF protein; KEGG: pfs:PFLU3063 hypothetical protein YP_004473774.1 PFAM: Sodium:dicarboxylate symporter; KEGG: ppf:Pput_3684 sodium:dicarboxylate symporter YP_004473775.1 KEGG: pfl:PFL_2499 citrate transporter; TIGRFAM: Citrate transporter; PFAM: Divalent ion symporter YP_004473776.1 KEGG: pst:PSPTO_3917 hypothetical protein YP_004473777.1 PFAM: Thioredoxin domain; KEGG: pap:PSPA7_3969 thioredoxin YP_004473778.1 KEGG: ppg:PputGB1_2634 hypothetical protein YP_004473779.1 KEGG: avn:Avin_49570 transcriptional regulatory protein, MerR family; PFAM: transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004473780.1 KEGG: avn:Avin_49560 acyl-CoA dehydrogenase; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain YP_004473781.1 KEGG: pmy:Pmen_2032 propionyl-CoA carboxylase; PFAM: Carboxyl transferase YP_004473782.1 PFAM: Crotonase, core; KEGG: pmy:Pmen_2031 gamma-carboxygeranoyl-CoA hydratase YP_004473783.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: pmy:Pmen_2030 3-methylcrotonoyl-CoA carboxylase, alpha subunit; SMART: Biotin carboxylase, C-terminal YP_004473784.1 KEGG: ppg:PputGB1_2384 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase YP_004473785.1 KEGG: psp:PSPPH_1582 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004473786.1 PFAM: protein of unknown function DUF1232; KEGG: psa:PST_1408 hypothetical protein YP_004473787.1 KEGG: hse:Hsero_3476 hypothetical protein YP_004473788.1 TIGRFAM: Thiolase; KEGG: pfs:PFLU2150 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004473789.1 KEGG: pmy:Pmen_1236 lipid A biosynthesis lauroyl acyltransferase; TIGRFAM: Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004473790.1 PFAM: Patatin/phospholipase A2-related; KEGG: psa:PST_4145 alpha-beta hydrolase esterase YP_004473791.1 PFAM: ATPase, AFG1-like; KEGG: pae:PA2353 hypothetical protein YP_004473792.1 KEGG: pfs:PFLU2114 regulatory protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004473793.1 KEGG: pau:PA14_11160 hypothetical protein YP_004473794.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pag:PLES_39861 acetyltransferase YP_004473795.1 PFAM: protein of unknown function DUF81; KEGG: pfs:PFLU2728 hypothetical protein YP_004473796.1 KEGG: vap:Vapar_1354 Appr-1-p processing domain protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing YP_004473797.1 KEGG: abo:ABO_2514 hypothetical protein YP_004473798.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: aav:Aave_1345 pyridoxal kinase; PFAM: Carbohydrate/purine kinase YP_004473799.1 KEGG: sbi:SORBI_02g002600 hypothetical protein YP_004473800.1 KEGG: har:HEAR0751 hypothetical protein YP_004473801.1 KEGG: pfs:PFLU0299 lipoprotein YP_004473802.1 PFAM: substrate-binding protein/LacI transcriptional regulator; KEGG: psp:PSPPH_2125 ribose ABC transporter periplasmic ribose-binding protein YP_004473803.1 PFAM: ABC transporter-like; KEGG: ppg:PputGB1_3491 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004473804.1 PFAM: ABC transporter permease; KEGG: pen:PSEEN1954 ribose ABC transporter permease RbsC YP_004473805.1 KEGG: pfl:PFL_2104 ribose operon repressor; PFAM: substrate-binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004473806.1 TIGRFAM: ribokinase, bacterial; KEGG: pfl:PFL_2105 ribokinase; PFAM: Carbohydrate/purine kinase YP_004473807.1 KEGG: pfl:PFL_2106 D-ribose pyranase; HAMAP: D-ribose pyranase; PFAM: D-ribose pyranase RbsD/L-fucose mutarotase FucU YP_004473808.1 KEGG: ctt:CtCNB1_4043 hypothetical protein YP_004473809.1 manually curated; KEGG: ppg:PputGB1_5421 hypothetical protein YP_004473810.1 KEGG: pmy:Pmen_1327 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase YP_004473811.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: pfl:PFL_4391 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004473812.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1435 ABC transporter permease YP_004473813.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_1330 binding-protein-dependent transport systems inner membrane component YP_004473814.1 PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: pfo:Pfl01_1685 hypothetical protein YP_004473815.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pmy:Pmen_1332 ABC-type Fe3+ transport system periplasmic component-like protein YP_004473816.1 KEGG: pmy:Pmen_1333 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004473817.1 KEGG: psa:PST_1613 sugar efflux transporter; HAMAP: sugar efflux transporter; PFAM: Major facilitator superfamily MFS-1 YP_004473818.1 KEGG: pfl:PFL_2910 hypothetical protein YP_004473819.1 PFAM: Flavodoxin-like fold; KEGG: pfl:PFL_0769 quinone family NAD(P)H dehydrogenase YP_004473820.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pmy:Pmen_3167 antibiotic biosynthesis monooxygenase YP_004473821.1 KEGG: pmy:Pmen_2644 hypothetical protein YP_004473822.1 PFAM: Uncharacterised protein family YphA; KEGG: pmy:Pmen_2516 DoxX family protein YP_004473823.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: hch:HCH_01401 hypothetical protein YP_004473824.1 KEGG: llk:LLKF_1444 sugar ABC transporter permease YP_004473825.1 KEGG: psa:PST_1626 hypothetical protein YP_004473826.1 KEGG: psa:PST_1627 hypothetical protein YP_004473827.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: pst:PSPTO_1008 methyl-accepting chemotaxis protein; SMART: Chemotaxis methyl-accepting receptor, signalling; PAC motif YP_004473828.1 KEGG: pmy:Pmen_2039 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004473829.1 PFAM: Drug/metabolite transporter; KEGG: pfo:Pfl01_2490 hypothetical protein YP_004473830.1 PFAM: peptidase U32; KEGG: pmy:Pmen_3166 peptidase U32 YP_004473831.1 KEGG: pmy:Pmen_3165 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0149; PFAM: SEC-C motif YP_004473832.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pst:PSPTO_2479 hypothetical protein YP_004473833.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pat:Patl_1920 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004473834.1 KEGG: psa:PST_1621 gluconolactonase; PFAM: SMP-30/gluconolaconase/LRE-like region; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal YP_004473835.1 PFAM: Domain of unknown function DUF861, cupin-3; KEGG: pmy:Pmen_3163 protein of unknown function DUF861, cupin_3 YP_004473836.1 PFAM: Drug/metabolite transporter; KEGG: hel:HELO_1870 hypothetical protein YP_004473837.1 PFAM: protein of unknown function DUF2076; KEGG: pap:PSPA7_1156 hypothetical protein YP_004473838.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ppw:PputW619_2240 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004473839.1 PFAM: Ion transport 2; KEGG: avn:Avin_22810 hypothetical protein YP_004473840.1 PFAM: methyltransferase type 11; KEGG: pmy:Pmen_3161 methyltransferase type 12 YP_004473841.1 KEGG: dsa:Desal_3461 rod shape-determining protein RodA YP_004473842.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: psb:Psyr_3352 GCN5-related N-acetyltransferase YP_004473843.1 KEGG: pmy:Pmen_3158 hypothetical protein YP_004473844.1 PFAM: protein of unknown function DUF1289; KEGG: pmy:Pmen_3157 hypothetical protein YP_004473845.1 KEGG: psp:PSPPH_3733 hypothetical protein YP_004473846.1 KEGG: tfu:Tfu_1658 Sel1-like repeat-containing serine/threonine protein kinase; PFAM: Tetratricopeptide TPR-1; Sel1-like; Tetratricopeptide TPR-4; SMART: Sel1-like; Tetratricopeptide repeat YP_004473847.1 KEGG: pen:PSEEN3677 hypothetical protein YP_004473848.1 KEGG: pmy:Pmen_3152 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase YP_004473849.1 KEGG: pmy:Pmen_3151 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit, C-terminal; ribonucleotide reductase large subunit, N-terminal; ATP-cone YP_004473850.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: pmy:Pmen_1232 ribosomal large subunit pseudouridine synthase A YP_004473851.1 TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: pmy:Pmen_1233 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_004473852.1 KEGG: pmy:Pmen_1234 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase YP_004473853.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: pmy:Pmen_1235 septum formation inhibitor; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal YP_004473854.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: psb:Psyr_3098 GCN5-related N-acetyltransferase YP_004473855.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: avn:Avin_03790 LysR family transcriptional regulator YP_004473856.1 PFAM: Major facilitator superfamily MFS-1; KEGG: avn:Avin_03770 major facilitator family (MFS) transporter YP_004473857.1 KEGG: pap:PSPA7_0933 hypothetical protein; PFAM: SH3, type 3; SMART: SH3-like domain, bacterial YP_004473858.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psb:Psyr_2713 regulatory protein, LysR:LysR, substrate-binding YP_004473859.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfo:Pfl01_3284 major facilitator transporter YP_004473860.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: pfo:Pfl01_3283 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004473861.1 PFAM: Isochorismatase-like; KEGG: pag:PLES_10221 isochorismatase YP_004473862.1 KEGG: pmy:Pmen_1649 hypothetical protein YP_004473863.1 KEGG: ppg:PputGB1_3147 phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004473864.1 KEGG: pfs:PFLU3317 phosphate transporter permease; TIGRFAM: phosphate ABC transporter permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004473865.1 KEGG: pfs:PFLU3316 phosphate transporter permease; TIGRFAM: phosphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004473866.1 SMART: ATPase, AAA+ type, core; TIGRFAM: phosphate ABC transporter permease 1; KEGG: pfs:PFLU3315 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004473867.1 KEGG: ppg:PputGB1_3143 hypothetical protein YP_004473868.1 KEGG: pfs:PFLU3313 hypothetical protein YP_004473869.1 KEGG: psa:PST_4152 phosphoglucomutase; TIGRFAM: phosphoglucomutase, alpha-D-glucose specific; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, C-terminal YP_004473870.1 KEGG: pfl:PFL_2182 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473871.1 KEGG: ppg:PputGB1_2107 hypothetical protein YP_004473872.1 PFAM: transcription regulator Rrf2; KEGG: pfs:PFLU3638 DNA-binding protein YP_004473873.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: pag:PLES_07571 oxidoreductase YP_004473874.1 PFAM: Cytochrome c, class I; KEGG: reu:Reut_B3480 cytochrome c, class I YP_004473875.1 TIGRFAM: Trehalose synthase; KEGG: psa:PST_0034 trehalose synthase YP_004473876.1 KEGG: avn:Avin_20980 serine O-acetyltransferase YP_004473877.1 KEGG: pfo:Pfl01_3930 periplasmic solute binding protein YP_004473878.1 PFAM: ABC-3; KEGG: pfl:PFL_4175 cation ABC transporter permease YP_004473879.1 KEGG: pfo:Pfl01_3928 ABC transporter-like; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004473880.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: pfl:PFL_4173 cation ABC transporter periplasmic cation-binding protein YP_004473881.1 KEGG: pfs:PFLU2045 hypothetical protein YP_004473882.1 KEGG: pap:PSPA7_2854 hypothetical protein YP_004473883.1 KEGG: pag:PLES_28921 hypothetical protein YP_004473884.1 PFAM: peptidase M4, propeptide, PepSY; PepSY-associated TM helix; KEGG: pau:PA14_33600 hypothetical protein YP_004473885.1 KEGG: pmy:Pmen_2953 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473886.1 KEGG: pmy:Pmen_2951 2,4-dienoyl-CoA reductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD dependent oxidoreductase YP_004473887.1 KEGG: pmy:Pmen_2948 hypothetical protein YP_004473888.1 KEGG: pmy:Pmen_2947 1-aminocyclopropane-1-carboxylate deaminase-like protein YP_004473889.1 PFAM: protein of unknown function DUF1853; KEGG: pfl:PFL_3287 hypothetical protein YP_004473890.1 HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: pen:PSEEN1708 inorganic polyphosphate/ATP-NAD kinase; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted YP_004473891.1 PFAM: Metallo-dependent phosphatase; KEGG: pfs:PFLU2675 phosphatase YP_004473892.1 PFAM: peptidase S54, rhomboid domain; KEGG: pmy:Pmen_2942 rhomboid family protein YP_004473893.1 PFAM: protein of unknown function DUF1315; KEGG: pmy:Pmen_2941 hypothetical protein YP_004473894.1 KEGG: pmy:Pmen_2940 hypothetical protein YP_004473895.1 TIGRFAM: peptidase M1, alanyl aminopeptidase; KEGG: pmy:Pmen_2939 aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004473896.1 PFAM: protein of unknown function DUF1302; KEGG: pmy:Pmen_2938 hypothetical protein YP_004473897.1 PFAM: protein of unknown function DUF1329; KEGG: pmy:Pmen_2937 hypothetical protein YP_004473898.1 KEGG: pmy:Pmen_2936 hypothetical protein YP_004473899.1 KEGG: pfl:PFL_3278 hypothetical protein YP_004473900.1 manually curated; KEGG: bay:RBAM_024090 YrkP YP_004473901.1 manually curated; KEGG: scm:SCHCODRAFT_258936 glycoside hydrolase 85 protein YP_004473902.1 manually curated; KEGG: bbt:BBta_6725 hypothetical protein YP_004473903.1 manually curated; KEGG: cvi:CV_2280 hypothetical protein YP_004473904.1 manually curated; KEGG: hch:HCH_06551 hypothetical protein YP_004473905.1 manually curated; KEGG: acp:A2cp1_1511 conserved hypothetical cytosolic protein YP_004473906.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bgf:BC1003_0040 lysine exporter protein LysE/YggA YP_004473907.1 KEGG: pfl:PFL_3317 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004473908.1 KEGG: pmy:Pmen_2934 hypothetical protein YP_004473909.1 KEGG: pmy:Pmen_2933 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004473910.1 KEGG: pap:PSPA7_2067 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004473911.1 KEGG: pmy:Pmen_2931 hypothetical protein YP_004473912.1 PFAM: Domain of unknown function DUF58; KEGG: pmy:Pmen_2930 hypothetical protein YP_004473913.1 PFAM: ATPase, AAA-3; KEGG: pmy:Pmen_2929 ATPase YP_004473914.1 KEGG: vcj:VCD_002494 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004473915.1 PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: pmy:Pmen_2928 glutamate dehydrogenase (NAD) YP_004473916.1 PFAM: protein of unknown function DUF347; KEGG: ppg:PputGB1_4412 hypothetical protein YP_004473917.1 KEGG: pmy:Pmen_3013 hypothetical protein YP_004473918.1 KEGG: pmy:Pmen_3012 hypothetical protein YP_004473919.1 PFAM: Dihydroorotate dehydrogenase, class 1/ 2; TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase, class 2; KEGG: pmy:Pmen_3011 dihydroorotate dehydrogenase 2 YP_004473920.1 PFAM: ribosome modulation factor; KEGG: pmy:Pmen_3010 ribosome modulation factor YP_004473921.1 SMART: THUMP; HAMAP: S-adenosyl-L-dependent RNA methyltransferase, bacteria; KEGG: pst:PSPTO_2311 methylase, PFAM: RNA methylase; THUMP YP_004473922.1 TIGRFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: pmy:Pmen_3008 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_004473923.1 PFAM: protein of unknown function DUF469; KEGG: psb:Psyr_2112 hypothetical protein YP_004473924.1 KEGG: pmy:Pmen_3005 hypothetical protein YP_004473925.1 TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: pfs:PFLU1742 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: Metal-dependent phosphohydrolase, HD domain YP_004473926.1 KEGG: pmy:Pmen_3003 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; EAL C-terminal; SMART: Diguanylate phosphodiesterase, EAL domain YP_004473927.1 KEGG: pmy:Pmen_3002 hypothetical protein YP_004473928.1 KEGG: pmy:Pmen_3001 membrane protein-like protein YP_004473929.1 PFAM: protein of unknown function DUF883, ElaB; KEGG: psb:Psyr_2118 hypothetical protein YP_004473930.1 PFAM: Ammonium transporter; KEGG: pmy:Pmen_2999 Rh family protein/ammonium transporter YP_004473931.1 KEGG: pmy:Pmen_1740 hypothetical protein YP_004473932.1 PFAM: glutaredoxin-like; KEGG: pmy:Pmen_1741 glutaredoxin 2 YP_004473933.1 KEGG: pmy:Pmen_2185 CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver domain; SMART: CheW-like protein; Signal transduction response regulator, receiver domain YP_004473934.1 KEGG: pmy:Pmen_2966 hypothetical protein; HAMAP: protein sprT; SMART: protein of unknown function SprT YP_004473935.1 KEGG: pmy:Pmen_2963 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004473936.1 KEGG: pap:PSPA7_4186 C32 tRNA thiolase; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase YP_004473937.1 PFAM: methyladenine glycosylase; KEGG: pmy:Pmen_2960 3-methyladenine DNA glycosylase-like protein YP_004473938.1 KEGG: pst:PSPTO_1704 transcriptional regulator, Sir2 family; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2 YP_004473939.1 PFAM: NLP/P60; KEGG: ppw:PputW619_1227 NLP/P60 protein YP_004473940.1 PFAM: NLP/P60; KEGG: pmy:Pmen_1747 NLP/P60 protein YP_004473941.1 TIGRFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: pmy:Pmen_1750 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YP_004473942.1 TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; HAMAP: Cobyrinic acid a,c-diamide synthase CbiA; KEGG: psa:PST_1292 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_004473943.1 KEGG: pst:PSPTO_1710 nitroreductase; TIGRFAM: Cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase-like YP_004473944.1 KEGG: pmy:Pmen_1753 cobalamin biosynthesis protein; TIGRFAM: Cobalamin biosynthesis CobD/CbiB; PFAM: Cobalamin biosynthesis CobD/CbiB YP_004473945.1 KEGG: psa:PST_1296 threonine-phosphate decarboxylase; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase, class I/classII YP_004473946.1 TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: pfs:PFLU4486 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_004473947.1 KEGG: pmy:Pmen_1756 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase YP_004473948.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: pmy:Pmen_1757 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004473949.1 TIGRFAM: Alpha-ribazole phosphatase, CobC; PFAM: histidine phosphatase superfamily, clade-1; KEGG: pmy:Pmen_1758 phosphoglycerate mutase; SMART: histidine phosphatase superfamily, clade-1 YP_004473950.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: ppw:PputW619_1240 cobalamin synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase YP_004473951.1 KEGG: ppg:PputGB1_1281 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004473952.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_1761 major facilitator transporter YP_004473953.1 KEGG: pen:PSEEN1391 hypothetical protein YP_004473954.1 PFAM: glutathione peroxidase; KEGG: psb:Psyr_3670 glutathione peroxidase YP_004473955.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: pmy:Pmen_1767 aromatic hydrocarbon degradation membrane protein YP_004473956.1 KEGG: pap:PSPA7_4101 hypothetical protein YP_004473958.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: spe:Spro_2222 dihydrodipicolinate synthase YP_004473959.1 SMART: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain; TIGRFAM: ribonuclease D; KEGG: pmy:Pmen_1773 ribonuclease D; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain YP_004473960.1 KEGG: pen:PSEEN4034 hypothetical protein; HAMAP: Uncharacterised protein family UPF0745; PFAM: Uncharacterised protein family UPF0745 YP_004473961.1 KEGG: ppw:PputW619_3898 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004473962.1 KEGG: pfo:Pfl01_1392 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP006173; PFAM: Uncharacterised protein family UPF0153 YP_004473963.1 KEGG: pmy:Pmen_1777 hypothetical protein YP_004473964.1 KEGG: ppu:PP_1399 hypothetical protein YP_004473965.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: pfs:PFLU1523 RNA methyltransferase YP_004473966.1 KEGG: pfl:PFL_1503 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004473967.1 KEGG: hoh:Hoch_1559 hypothetical protein YP_004473968.1 KEGG: pmy:Pmen_1781 oligopeptidase B YP_004473969.1 KEGG: pmy:Pmen_1782 hypothetical protein YP_004473970.1 PFAM: glutamine amidotransferase, class-II; KEGG: pmy:Pmen_1784 glutamine amidotransferase, class-II YP_004473971.1 KEGG: pmy:Pmen_1785 hypothetical protein YP_004473972.1 KEGG: ppw:PputW619_3874 hypothetical protein YP_004473973.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pap:PSPA7_3983 hypothetical protein YP_004473974.1 KEGG: pmy:Pmen_1788 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core YP_004473975.1 KEGG: psb:Psyr_1582 hypothetical protein YP_004473976.1 TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: pmy:Pmen_1790 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004473977.1 PFAM: Drug/metabolite transporter; KEGG: pmy:Pmen_1791 hypothetical protein YP_004473978.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: pau:PA14_34990 TonB-dependent receptor YP_004473979.1 KEGG: avn:Avin_32840 hypothetical protein YP_004473980.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: pmy:Pmen_1800 methyl-accepting chemotaxis sensory transducer; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004473981.1 PFAM: DTW; KEGG: pmy:Pmen_1801 DTW domain-containing protein YP_004473982.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: pmy:Pmen_1238 pirin domain-containing protein YP_004473983.1 PFAM: VacJ-like lipoprotein; KEGG: pfo:Pfl01_1602 VacJ-like lipoprotein YP_004473984.1 KEGG: pfl:PFL_1707 hypothetical protein YP_004473985.1 KEGG: avn:Avin_35070 hypothetical protein YP_004473986.1 manually curated; KEGG: avn:Avin_35060 glycoside hydrolase YP_004473987.1 TIGRFAM: Competence protein ComEA, helix-hairpin-helix domain; KEGG: pmy:Pmen_1879 helix-hairpin-helix repeat-containing competence protein ComEA YP_004473988.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: psa:PST_2591 flagellar hook-basal body protein FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004473989.1 KEGG: pmy:Pmen_2825 flagellar MS-ring protein; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal YP_004473990.1 KEGG: pap:PSPA7_4269 flagellar motor switch protein G; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal; Magnesium transporter MgtE intracellular domain YP_004473991.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: pmy:Pmen_2823 flagellar assembly protein H YP_004473992.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Flagellar export ATPase, FliI, clade 1; ATPase, type III secretion system, FliI/YscN; KEGG: pmy:Pmen_2822 flagellum-specific ATP synthase; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain YP_004473993.1 KEGG: pmy:Pmen_2821 flagellar biosynthesis chaperone; TIGRFAM: Flagellar export FliJ; PFAM: Flagellar export FliJ YP_004473994.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: avn:Avin_34370 antisigma-factor antagonist STAS domain protein YP_004473995.1 KEGG: avn:Avin_34360 response regulator; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; protein phosphatase 2C-like YP_004473996.1 KEGG: pmy:Pmen_2818 Hpt protein; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_004473997.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: pmy:Pmen_2817 flagellar hook-length control protein YP_004473998.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: pag:PLES_39711 flagellar basal body-associated protein FliL YP_004473999.1 KEGG: pmy:Pmen_2815 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA) YP_004474000.1 KEGG: pmy:Pmen_2814 flagellar motor switch protein; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004474001.1 KEGG: pmy:Pmen_2813 flagellar biosynthesis protein, FliO; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO YP_004474002.1 KEGG: pmy:Pmen_2812 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004474003.1 KEGG: psa:PST_2576 flagellar biosynthesis protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3 YP_004474004.1 KEGG: psa:PST_2575 flagellar biosynthesis protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004474005.1 KEGG: pmy:Pmen_2809 flagellar biosynthesis protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter YP_004474006.1 PFAM: Superoxide dismutase, copper/zinc binding; KEGG: psa:PST_2573 superoxide dismutase, Cu-Zn YP_004474007.1 KEGG: pmy:Pmen_2808 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004474008.1 TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: pmy:Pmen_2807 flagellar biosynthesis regulator FlhF; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core YP_004474009.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pmy:Pmen_2806 cobyrinic acid a,c-diamide synthase YP_004474010.1 manually curated; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; KEGG: pmy:Pmen_2805 flagellar biosynthesis sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004474011.1 KEGG: pag:PLES_39571 two-component response regulator CheY; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004474012.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: pmy:Pmen_2803 chemotaxis phosphatase, CheZ YP_004474013.1 KEGG: pmy:Pmen_2802 CheA signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein; SMART: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_004474014.1 HAMAP: Signal transduction response regulator, chemotaxis, CheB; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; KEGG: pmy:Pmen_2801 chemotaxis-specific methylesterase; SMART: Signal transduction response regulator, receiver domain YP_004474015.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pmy:Pmen_2800 flagellar motor protein YP_004474016.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pau:PA14_45540 flagellar motor protein MotD YP_004474017.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pmy:Pmen_2798 cobyrinic acid a,c-diamide synthase YP_004474018.1 KEGG: pmy:Pmen_2797 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004474019.1 KEGG: pmy:Pmen_2796 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004474020.1 KEGG: pmy:Pmen_2795 hypothetical protein YP_004474021.1 PFAM: Type III secretion exporter; KEGG: pmy:Pmen_2793 flagellar protein FhlB-like protein YP_004474022.1 KEGG: pmy:Pmen_2792 hypothetical protein YP_004474023.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter haem export, CcmA; KEGG: pau:PA14_45380 cytochrome c biogenesis protein CcmA; PFAM: ABC transporter-like YP_004474024.1 KEGG: pmy:Pmen_2790 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB YP_004474025.1 KEGG: psa:PST_2553 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein YP_004474026.1 KEGG: psa:PST_2552 cytochrome c-type biogenesis protein CcmD; TIGRFAM: Haem exporter protein D (CcmD); PFAM: Haem exporter protein D (CcmD) YP_004474027.1 KEGG: pmy:Pmen_2787 cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein YP_004474028.1 KEGG: pmy:Pmen_2786 cytochrome c-type biogenesis protein CcmF; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein YP_004474029.1 KEGG: psa:PST_2549 cytochrome c biogenesis protein CcmG; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin YP_004474030.1 PFAM: Cytochrome C biogenesis protein CcmH; KEGG: avn:Avin_30380 cytochrome c biogenesis protein YP_004474031.1 KEGG: pmy:Pmen_2783 hypothetical protein; TIGRFAM: Cytochrome c-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR2 YP_004474032.1 KEGG: pmy:Pmen_2782 hypothetical protein YP_004474033.1 TIGRFAM: beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: transcription regulator IclR, C-terminal; transcription regulator IclR, N-terminal; KEGG: psa:PST_1253 transcriptional regulator PcaR; SMART: transcription regulator IclR, N-terminal YP_004474034.1 KEGG: pfs:PFLU4325 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004474035.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_1245 major facilitator transporter YP_004474036.1 KEGG: pmy:Pmen_1246 hypothetical protein YP_004474037.1 PFAM: Uncharacterised protein family UPF0270; KEGG: pmy:Pmen_2959 hypothetical protein YP_004474038.1 SMART: histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, beta subunit; KEGG: pmy:Pmen_1855 integration host factor subunit beta; HAMAP: Integration host factor, beta subunit; PFAM: histone-like bacterial DNA-binding protein YP_004474039.1 KEGG: psp:PSPPH_0903 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474040.1 KEGG: pfo:Pfl01_4102 peptidase M42; TIGRFAM: peptidase M42, hydrolase; PFAM: peptidase M42 YP_004474041.1 TIGRFAM: GNAT-acetyltransferase; KEGG: pmy:Pmen_2956 glutathione synthase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; ATP-grasp fold, RimK-type YP_004474042.1 KEGG: pmy:Pmen_2955 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: Asparagine synthase amidotransferase; Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; glutamine amidotransferase, class-II YP_004474043.1 manually curated; KEGG: pst:PSPTO_0262 hypothetical protein YP_004474044.1 TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal; HAMAP: tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; KEGG: pmy:Pmen_3230 5-methylaminomethyl-2-thiouridine methyltransferase; PFAM: Domain of unknown function DUF752; FAD dependent oxidoreductase YP_004474045.1 KEGG: pmy:Pmen_3229 hypothetical protein; TIGRFAM: polyphosphate:AMP phosphotransferase; PFAM: polyphosphate kinase-2-related YP_004474046.1 KEGG: pap:PSPA7_1676 hypothetical protein YP_004474047.1 PFAM: protein of unknown function DUF454; KEGG: pmy:Pmen_1810 hypothetical protein YP_004474048.1 TIGRFAM: Uncharacterised protein family UPF0149; KEGG: pmy:Pmen_1811 YecA family protein YP_004474049.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: pfo:Pfl01_1468 ATP-dependent DNA helicase RecQ; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004474050.1 KEGG: pmy:Pmen_1814 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004474051.1 KEGG: maq:Maqu_0114 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004474052.1 KEGG: pmy:Pmen_1815 peptidoglycan-binding LysM; TIGRFAM: Motility protein FimV, C-terminal; Motility protein FimV, N-terminal; PFAM: peptidoglycan-binding lysin domain YP_004474053.1 TIGRFAM: Selenoprotein, Rdx type; KEGG: pap:PSPA7_1792 hypothetical protein YP_004474054.1 KEGG: pag:PLES_18461 CsaA protein; TIGRFAM: Secretion chaperone CsaA; PFAM: tRNA-binding domain YP_004474055.1 KEGG: pmy:Pmen_1820 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474056.1 PFAM: Metallo-dependent phosphatase; KEGG: pfl:PFL_1585 Ser/Thr protein phosphatase YP_004474057.1 KEGG: pmy:Pmen_1823 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; MASE2; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_004474058.1 KEGG: pmy:Pmen_1824 membrane protein-like protein YP_004474059.1 KEGG: ppf:Pput_1404 TrkH family potassium uptake protein; TIGRFAM: Potassium uptake protein TrkH; PFAM: Cation transporter YP_004474060.1 PFAM: Uncharacterised protein family UPF0153; KEGG: pmy:Pmen_1827 hypothetical protein YP_004474061.1 PFAM: Nitroreductase-like; KEGG: pmy:Pmen_1828 nitroreductase YP_004474062.1 KEGG: pmy:Pmen_1829 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004474063.1 KEGG: pmy:Pmen_1830 protein of unknown function, Spy-related YP_004474064.1 KEGG: pen:PSEEN3908 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004474065.1 PFAM: YCII-related; KEGG: pmy:Pmen_1833 YciI-like protein YP_004474066.1 manually curated; PFAM: PHP, C-terminal; KEGG: pmy:Pmen_1834 phosphotransferase domain-containing protein; SMART: polymerase/histidinol phosphatase, N-terminal YP_004474067.1 KEGG: pmy:Pmen_1835 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004474068.1 KEGG: pmy:Pmen_1838 condensin subunit ScpA; HAMAP: Prokaryotic chromosome segregation/condensation protein ScpA; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA YP_004474069.1 KEGG: pmy:Pmen_1839 condensin subunit ScpB; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote YP_004474070.1 PFAM: protein of unknown function DUF1289; KEGG: pfs:PFLU4876 hypothetical protein YP_004474071.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: pmy:Pmen_1841 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4 YP_004474072.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_1842 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004474074.1 KEGG: pmy:Pmen_1843 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004474075.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A0674 hypothetical protein YP_004474076.1 PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; HAMAP: 2-phosphoglycolate phosphatase, prokaryotic; KEGG: avn:Avin_15750 phosphoglycolate phosphatase YP_004474077.1 KEGG: kpu:KP1_2809 serine-pyruvate aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004474078.1 PFAM: methyltransferase type 11; TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: Ubiquinone biosynthesis O-methyltransferase; KEGG: pae:PA3171 3-demethylubiquinone-9 3-methyltransferase YP_004474079.1 HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; KEGG: pfl:PFL_4316 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1 YP_004474080.1 TIGRFAM: Initiation factor 2B alpha/beta/delta; KEGG: ppu:PP_1766 methylthioribose-1-phosphate isomerase; PFAM: Initiation factor 2B-related YP_004474081.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: pmy:Pmen_1848 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004474082.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: phosphoserine aminotransferase, subgroup; HAMAP: phosphoserine aminotransferase; KEGG: pag:PLES_19011 phosphoserine aminotransferase YP_004474083.1 TIGRFAM: gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; KEGG: pmy:Pmen_1850 prephenate dehydratase; SMART: Chorismate mutase YP_004474084.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: histidinol-phosphate aminotransferase; HAMAP: histidinol-phosphate aminotransferase; KEGG: pmy:Pmen_1851 histidinol-phosphate aminotransferase YP_004474085.1 PFAM: Enolpyruvate transferase domain; Prephenate dehydrogenase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: pen:PSEEN1490 bifunctional cyclohexadienyl dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase YP_004474086.1 PFAM: Cytidylate kinase domain; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: pmy:Pmen_1853 cytidylate kinase YP_004474087.1 TIGRFAM: ribosomal S1 synthesis/modification protein; PFAM: ribosomal protein S1, RNA-binding domain; KEGG: pmy:Pmen_1854 30S ribosomal protein S1; SMART: RNA-binding domain, S1 YP_004474088.1 KEGG: hse:Hsero_1308 achlorobenzoate 1,2-dioxygenase subunit alpha; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal YP_004474089.1 TIGRFAM: Benzoate 1,2-dioxygenase, small subunit; KEGG: ppg:PputGB1_2687 benzoate 1,2-dioxygenase, small subunit; PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit YP_004474090.1 KEGG: bam:Bamb_6582 oxidoreductase FAD/NAD(P)-binding subunit; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; ferredoxin YP_004474091.1 KEGG: psa:PST_1670 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004474092.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppg:PputGB1_2684 major facilitator transporter YP_004474093.1 KEGG: psa:PST_1675 benzoate transport protein; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004474094.1 PFAM: Outer membrane porin, bacterial; KEGG: ppg:PputGB1_2681 outer membrane porin YP_004474095.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_3863 transcriptional activator CatR YP_004474096.1 SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: pau:PA14_32220 muconate cycloisomerase I; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004474097.1 TIGRFAM: Muconolactone delta-isomerase; KEGG: ppg:PputGB1_2205 muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase YP_004474098.1 TIGRFAM: Catechol 1,2-dioxygenase, proteobacteria; KEGG: pfl:PFL_3860 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal YP_004474099.1 KEGG: pfl:PFL_3859 transcriptional regulator BenR; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474100.1 PFAM: Coenzyme A transferase; KEGG: pau:PA14_02760 CoA transferase, subunit A; SMART: Coenzyme A transferase YP_004474101.1 PFAM: Coenzyme A transferase; KEGG: avn:Avin_38210 3-oxoadipate:succinyl-CoA transferase, subunit B; SMART: Coenzyme A transferase YP_004474102.1 TIGRFAM: beta-ketoadipyl CoA thiolase; Thiolase; KEGG: pag:PLES_02251 beta-ketoadipyl CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004474103.1 KEGG: pfs:PFLU1368 alpha-ketoglutarate permease; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter YP_004474104.1 TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; KEGG: pst:PSPTO_2341 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Lyase 1, N-terminal; adenylosuccinate lyase C-terminal metazoa/fungi YP_004474105.1 TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: avn:Avin_38180 3-oxoadipate enol-lacton hydrolase; PFAM: Alpha/beta hydrolase fold-1 YP_004474106.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; KEGG: avn:Avin_38170 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase YP_004474107.1 KEGG: cja:CJA_3538 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474108.1 KEGG: pfs:PFLU4113 AraC family regulatory protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474109.1 PFAM: Aldehyde dehydrogenase domain; KEGG: pfs:PFLU4112 aldehyde dehydrogenase YP_004474110.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pfs:PFLU4111 oxidoreductase YP_004474111.1 PFAM: Monooxygenase, FAD-binding; KEGG: pfs:PFLU4110 3-(3-hydroxyphenyl)propionate hydroxylase YP_004474112.1 KEGG: pfs:PFLU4109 IclR family transcriptional regulator; PFAM: transcription regulator IclR, N-terminal; transcription regulator IclR, C-terminal; SMART: transcription regulator IclR, N-terminal YP_004474113.1 KEGG: pfs:PFLU4108 dioxygenase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004474114.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bpt:Bpet1431 4-hydroxybenzoate transporter YP_004474115.1 KEGG: avi:Avi_5953 vanillin: NAD oxidoreductase; PFAM: Aldehyde dehydrogenase domain YP_004474116.1 PFAM: Fusaric acid resistance protein, conserved region; KEGG: avi:Avi_5952 membrane protein YP_004474117.1 KEGG: pfs:PFLU4107 dioxygenase; PFAM: Carotenoid oxygenase YP_004474118.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfs:PFLU4106 hypothetical protein YP_004474119.1 KEGG: pfs:PFLU4105 hypothetical protein YP_004474120.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter ATP-binding/permease; KEGG: pmy:Pmen_2515 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter-like; ABC transporter transmembrane domain YP_004474121.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: psp:PSPPH_1805 GTP cyclohydrolase I YP_004474122.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: pmy:Pmen_1311 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004474123.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: psa:PST_2444 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004474124.1 TIGRFAM: glucokinase; KEGG: pfo:Pfl01_4374 glucokinase; PFAM: glucokinase YP_004474125.1 KEGG: pfs:PFLU4962 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004474126.1 KEGG: pfo:Pfl01_4372 periplasmic sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004474127.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: pfl:PFL_4618 hypothetical protein YP_004474128.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pfl:PFL_4617 sugar ABC transporter periplasmic sugar-binding protein YP_004474129.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4616 sugar ABC transporter permease YP_004474130.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_1152 binding-protein-dependent transport systems inner membrane component YP_004474131.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: pfl:PFL_4614 glucose ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004474132.1 PFAM: Porin, LamB type; KEGG: psa:PST_2436 maltoporin YP_004474133.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: pen:PSEEN4406 DNA-binding transcriptional regulator HexR YP_004474134.1 TIGRFAM: glucose-6-phosphate dehydrogenase; KEGG: pmy:Pmen_3143 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase, C-terminal; glucose-6-phosphate dehydrogenase, NAD-binding YP_004474135.1 KEGG: pmy:Pmen_3142 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase, DevB-type YP_004474136.1 TIGRFAM: KDPG/KHG aldolase; KEGG: pmy:Pmen_3141 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004474137.1 PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; KEGG: fre:Franean1_7058 shikimate dehydrogenase substrate binding subunit YP_004474138.1 PFAM: protein of unknown function DUF3309; KEGG: pmy:Pmen_0312 hypothetical protein YP_004474139.1 PFAM: beta-lactamase-like; KEGG: pfs:PFLU1313 hypothetical protein YP_004474140.1 PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: psa:PST_2662 ATP-dependent DNA ligase YP_004474141.1 KEGG: psa:PST_2663 DEAD-box ATP dependent DNA helicase; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004474142.1 PFAM: Metallo-dependent phosphatase; KEGG: pmy:Pmen_2193 ICC-like phosphoesterase YP_004474143.1 KEGG: pfl:PFL_0778 methyl-accepting chemotaxis transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474144.1 KEGG: pmy:Pmen_1880 hypothetical protein YP_004474145.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pfl:PFL_4349 alpha/beta fold family hydrolase YP_004474146.1 TIGRFAM: Chorismate synthase; KEGG: pfo:Pfl01_1722 chorismate synthase; PFAM: Chorismate synthase YP_004474147.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_1883 major facilitator transporter YP_004474148.1 KEGG: pfl:PFL_4346 ARD/ARD' family protein YP_004474149.1 KEGG: pmy:Pmen_1887 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylguanine DNA methyltransferase, ribonuclease-like YP_004474150.1 PFAM: AlkA, N-terminal; HhH-GPD domain; KEGG: pae:PA1686 DNA-3-methyladenine glycosidase II; SMART: HhH-GPD domain YP_004474151.1 PFAM: Sulfatase; KEGG: pfs:PFLU4327 sulfatase YP_004474152.1 KEGG: xcv:XCV0486 secreted protein YP_004474153.1 KEGG: psa:PST_1594 hypothetical protein YP_004474154.1 PFAM: Domain of unknown function DUF1260; KEGG: pmy:Pmen_1893 hypothetical protein YP_004474155.1 KEGG: psa:PST_1805 hypothetical protein YP_004474156.1 KEGG: psa:PST_1806 thermolysin metallopeptidase, PFAM: peptidase M4, thermolysin C-terminal; peptidase M4, thermolysin YP_004474157.1 PFAM: Domain of unknown function DUF404; Domain of unknown function DUF407; KEGG: pmy:Pmen_2597 hypothetical protein YP_004474158.1 PFAM: Domain of unknown function DUF403; KEGG: pmy:Pmen_2596 hypothetical protein YP_004474159.1 KEGG: pmy:Pmen_2595 transglutaminase; PFAM: Bacterial transglutaminase-like, N-terminal; transglutaminase-like; SMART: transglutaminase-like YP_004474160.1 PFAM: hypothetical protein; KEGG: ppg:PputGB1_2782 hypothetical protein YP_004474161.1 KEGG: avn:Avin_23890 hypothetical protein YP_004474162.1 KEGG: pmy:Pmen_2589 hypothetical protein YP_004474163.1 KEGG: bgl:bglu_1g29860 peptidase M48 family protein YP_004474164.1 PFAM: glutamine amidotransferase class-I, C-terminal; KEGG: pfo:Pfl01_1741 amidotransferase YP_004474165.1 PFAM: Malate:quinone-oxidoreductase; TIGRFAM: Malate:quinone-oxidoreductase; KEGG: pau:PA14_19470 malate:quinone oxidoreductase; HAMAP: Malate:quinone-oxidoreductase YP_004474166.1 KEGG: bwe:BcerKBAB4_2153 1A family penicillin-binding protein YP_004474167.1 PFAM: Aldehyde dehydrogenase domain; KEGG: pmy:Pmen_1964 aldehyde dehydrogenase YP_004474168.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN1565 LysR family transcriptional regulator YP_004474169.1 PFAM: protein of unknown function DUF81; KEGG: psa:PST_2423 hypothetical protein YP_004474170.1 SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase; KEGG: pag:PLES_21881 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain YP_004474171.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; HAMAP: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: ppf:Pput_3582 7-cyano-7-deazaguanine reductase YP_004474172.1 KEGG: pmy:Pmen_1924 hypothetical protein YP_004474173.1 KEGG: pfs:PFLU1580 hypothetical protein YP_004474174.1 PFAM: VacJ-like lipoprotein; KEGG: pmy:Pmen_1927 VacJ family lipoprotein YP_004474175.1 PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_1928 type IV pilus assembly PilZ YP_004474176.1 KEGG: pmy:Pmen_1929 response regulator receiver protein; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; protein phosphatase 2C-like YP_004474177.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: pmy:Pmen_1930 anti-sigma-factor antagonist YP_004474178.1 TIGRFAM: transaldolase 1; HAMAP: transaldolase 1; KEGG: pmy:Pmen_1931 transaldolase B; PFAM: transaldolase YP_004474179.1 KEGG: pau:PA14_27980 tRNA-dihydrouridine synthase A; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; PFAM: tRNA-dihydrouridine synthase YP_004474180.1 PFAM: Integrase, catalytic core, phage; KEGG: pfs:PFLU1587 phage integrase YP_004474181.1 KEGG: bvi:Bcep1808_2468 hypothetical protein YP_004474183.1 KEGG: avn:Avin_42030 antitoxin protein; manually curated; TIGRFAM: Addiction module antidote protein, HigA YP_004474184.1 KEGG: pfl:PFL_5368 proteic killer protein, manually curated; PFAM: Plasmid maintenance system killer YP_004474185.1 PFAM: protein of unknown function DUF2274; KEGG: ajs:Ajs_2901 hypothetical protein YP_004474186.1 PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pna:Pnap_4203 conjugation TrbI family protein YP_004474187.1 KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX YP_004474188.1 KEGG: rme:Rmet_1348 conjugal transfer protein TrbF YP_004474189.1 KEGG: pna:Pnap_4200 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6 YP_004474190.1 KEGG: dac:Daci_2694 lipoprotein YP_004474191.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: shn:Shewana3_1286 conjugal transfer protein TrbJ YP_004474192.1 KEGG: rme:Rmet_1553 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SMART: ATPase, AAA+ type, core YP_004474193.1 KEGG: ajs:Ajs_2909 conjugal transfer TrbD transmembrane protein YP_004474194.1 PFAM: Conjugal transfer,TrbC; KEGG: bpt:Bpet2207 conjugal transfer protein TrbC YP_004474195.1 KEGG: pna:Pnap_4195 type II secretion system protein E; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E YP_004474196.1 KEGG: pna:Pnap_4194 CopG family transcriptional regulator YP_004474197.1 PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pna:Pnap_4193 conjugal transfer coupling protein TraG YP_004474198.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: acd:AOLE_01850 transcriptional regulator YP_004474199.1 KEGG: azl:AZL_c04190 hypothetical protein YP_004474200.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2259 hypothetical protein YP_004474201.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_4191 LysR family transcriptional regulator YP_004474202.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bpt:Bpet1329 MFS transporter YP_004474203.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: bpt:Bpet1328 asparagine synthetase, glutamine-hydrolyzing; PFAM: Asparagine synthase; glutamine amidotransferase, class-II YP_004474204.1 PFAM: Oxidoreductase, N-terminal; KEGG: bpt:Bpet1327 oxidoreductase YP_004474205.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bpt:Bpet1326 acetyltransferase YP_004474206.1 TIGRFAM: Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase; KEGG: bpt:Bpet1325 5-aminolevulinate synthase; PFAM: Aminotransferase, class I/classII YP_004474207.1 SMART: Helix-turn-helix type 3; KEGG: bpt:Bpet1324 DNA-binding protein YP_004474208.1 KEGG: pna:Pnap_4171 hypothetical protein YP_004474209.1 manually curated; KEGG: sml:Smlt1309 hypothetical protein YP_004474210.1 PFAM: peptidase S26, conserved region; KEGG: pau:PA14_31080 conjugal transfer protein YP_004474211.1 KEGG: dac:Daci_2719 hypothetical protein YP_004474212.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pmy:Pmen_3433 cobyrinic acid a,c-diamide synthase YP_004474213.1 KEGG: pna:Pnap_4166 replication initiator and transcription repressor protein; manually curated; PFAM: Replication initiator protein A YP_004474214.1 manually curated; KEGG: pna:Pnap_4165 hypothetical protein YP_004474215.1 KEGG: pag:PLES_55771 hypothetical protein YP_004474216.1 KEGG: bav:BAV1597 acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004474217.1 manually curated; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: bav:BAV1500 GntR-family transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004474218.1 manually curated; TIGRFAM: Benzoate membrane transport protein; KEGG: mms:mma_2006 benzoate transport protein; PFAM: Benzoate membrane transport protein YP_004474219.1 KEGG: pwa:Pecwa_4019 alanine racemase domain protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: alanine racemase, N-terminal YP_004474220.1 KEGG: pwa:Pecwa_4018 serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase YP_004474221.1 KEGG: cak:Caul_4142 hypothetical protein YP_004474222.1 PFAM: Domain of unknown function DUF88; KEGG: pna:Pnap_4909 hypothetical protein YP_004474223.1 KEGG: shn:Shewana3_1252 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 YP_004474224.1 PFAM: protein of unknown function DUF1349; KEGG: rlg:Rleg_6671 protein of unknown function DUF1349 YP_004474225.1 KEGG: pfl:PFL_2434 acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004474226.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_4786 regulatory protein TetR YP_004474227.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfs:PFLU1871 ABC transporter membrane protein YP_004474228.1 KEGG: ppg:PputGB1_3282 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004474229.1 PFAM: FecR protein; KEGG: ppg:PputGB1_3281 anti-FecI sigma factor, FecR YP_004474230.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: ppg:PputGB1_3280 TonB-dependent siderophore receptor; SMART: Secretin/TonB, short N-terminal YP_004474231.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_3134 LysR family transcriptional regulator YP_004474232.1 PFAM: FAD dependent oxidoreductase; KEGG: ctt:CtCNB1_3133 monooxygenase, FAD-binding protein YP_004474233.1 KEGG: pmy:Pmen_3423 hypothetical protein YP_004474234.1 KEGG: rpa:RPA1681 sensor histidine kinase YP_004474235.1 KEGG: rde:RD1_0183 ribonuclease R YP_004474236.1 KEGG: acb:A1S_0304 hypothetical protein YP_004474237.1 PFAM: peptidoglycan binding-like; KEGG: pfs:PFLU3251 hypothetical protein YP_004474238.1 PFAM: Radical SAM; KEGG: pfs:PFLU3250 hypothetical protein YP_004474239.1 KEGG: pfs:PFLU3249 radical SAM protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004474240.1 KEGG: pfs:PFLU3248 hypothetical protein YP_004474242.1 KEGG: pfo:Pfl01_4854 virulence factor MviN-like YP_004474243.1 KEGG: xcc:XCC3133 DNA helicase related protein YP_004474244.1 TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; GLUG; KEGG: mms:mma_1615 heme utilization/adhesion protein; SMART: Signal transduction histidine kinase, HWE region YP_004474245.1 PFAM: polypeptide-transport-associated, ShlB-type; Bacterial surface antigen (D15); KEGG: avn:Avin_12270 hypothetical protein YP_004474246.1 KEGG: dbr:Deba_0156 cache sensor protein YP_004474247.1 KEGG: ppg:PputGB1_3382 hypothetical protein YP_004474248.1 KEGG: pfs:pQBR0344 transcriptional regulator YP_004474249.1 KEGG: pfs:PFLU2493 hypothetical protein YP_004474250.1 manually curated; KEGG: ppw:PputW619_3757 deoxyribonuclease I; PFAM: Endonuclease I YP_004474251.1 KEGG: pfs:PFLU5309 methyl-accepting chemotaxis protein; PFAM: Nitrate/nitrite sensing protein; HAMP linker domain; Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004474252.1 KEGG: eok:G2583_3596 hypothetical protein YP_004474253.1 SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; manually curated; KEGG: psb:Psyr_1778 PAS; TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004474254.1 KEGG: ppw:PputW619_2132 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain YP_004474255.1 KEGG: gla:GL50803_22385 protein 21.1 YP_004474256.1 KEGG: bph:Bphy_0848 CsbD family protein YP_004474257.1 PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: pfl:PFL_4065 cyclic beta 1-2 glucan synthetase YP_004474258.1 KEGG: ppg:PputGB1_2989 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004474259.1 KEGG: pen:PSEEN2248 hypothetical protein YP_004474260.1 KEGG: pen:PSEEN2247 hypothetical protein YP_004474262.1 TIGRFAM: Trehalose transcription repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: pfl:PFL_4935 trehalose operon repressor; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004474263.1 TIGRFAM: phosphotransferase system, trehalose-specific IIBC component; phosphotransferase system, glucose-like IIB component; KEGG: pfs:PFLU5040 PTS system sucrose-specific transporter subunit IIBC; PFAM: phosphotransferase system, EIIC; phosphotransferase system EIIB/cysteine, phosphorylation site YP_004474264.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Alpha,alpha-phosphotrehalase; KEGG: pfs:PFLU5039 trehalose-6-phosphate hydrolase; PFAM: glycosyl hydrolase, family 13, catalytic domain YP_004474265.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; phosphotransferase system, sugar-specific permease EIIA 1 domain; phosphotransferase system, phosphocarrier HPr protein; KEGG: pfs:PFLU5037 multiphosphoryl transfer protein; PFAM: PEP-utilising enzyme; phosphotransferase system, sugar-specific permease EIIA 1 domain; phosphotransferase system, phosphocarrier HPr protein; phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain YP_004474266.1 KEGG: pfl:PFL_4930 hypothetical protein YP_004474267.1 KEGG: art:Arth_3537 hypothetical protein YP_004474268.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pag:PLES_02971 polyamine transport protein YP_004474269.1 TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: nwi:Nwi_2853 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_004474270.1 KEGG: pfo:Pfl01_2237 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474271.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppf:Pput_4010 major facilitator transporter YP_004474272.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: pfo:Pfl01_2235 fumarylacetoacetate (FAA) hydrolase YP_004474273.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl01_2234 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004474274.1 KEGG: pfo:Pfl01_2233 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004474275.1 KEGG: pst:PSPTO_3755 hypothetical protein; HAMAP: Uncharacterised protein family UPF0059; PFAM: Domain of unknown function DUF204 YP_004474276.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related; KEGG: pct:PC1_2746 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004474277.1 PFAM: substrate-binding protein; KEGG: psp:PSPPH_3006 iron compound ABC transporter periplasmic iron compound-binding protein YP_004474278.1 PFAM: ABC transporter permease; KEGG: pfs:PFLU4220 cobalamin ABC transporter permease YP_004474279.1 PFAM: ABC transporter-like; KEGG: psb:Psyr_3096 ABC transporter; SMART: ATPase, AAA+ type, core YP_004474280.1 KEGG: ppg:PputGB1_2055 pseudoazurin; TIGRFAM: Pseudoazurin; PFAM: Blue (type 1) copper domain YP_004474281.1 PFAM: Major facilitator superfamily MFS-1; KEGG: asa:ASA_2211 major facilitator transporter YP_004474282.1 PFAM: Outer membrane porin, bacterial; KEGG: vap:Vapar_1367 outer membrane porin YP_004474283.1 KEGG: avn:Avin_29230 hypothetical protein YP_004474284.1 PFAM: Mechanosensitive ion channel MscS; KEGG: pmy:Pmen_1352 MscS mechanosensitive ion channel YP_004474285.1 KEGG: dpe:Dper_GL16888 GL16888 gene product from transcript GL16888-RA YP_004474286.1 PFAM: Alcohol dehydrogenase, C-terminal; KEGG: pfo:Pfl01_4195 zinc-containing alcohol dehydrogenase superfamily protein; SMART: polyketide synthase, enoylreductase YP_004474287.1 PFAM: Bile acid:sodium symporter; KEGG: pmy:Pmen_2679 bile acid:sodium symporter YP_004474288.1 KEGG: pmy:Pmen_2678 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004474289.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pmy:Pmen_2677 lysine exporter protein LysE/YggA YP_004474290.1 manually curated; PFAM: HTH transcriptional regulator, MarR; KEGG: pmy:Pmen_2672 MarR family transcriptional regulator; SMART: HTH transcriptional regulator, MarR YP_004474291.1 KEGG: pmy:Pmen_2671 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII YP_004474292.1 PFAM: glutathione S-transferase, N-terminal; glutathione S-transferase, C-terminal; KEGG: pfs:PFLU4352 glutathione S-transferase YP_004474293.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: psa:PST_0664 cadmium translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004474294.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: psa:PST_0663 transcriptional regulator CadR; SMART: HTH transcriptional regulator, MerR YP_004474295.1 KEGG: pmy:Pmen_2659 hypothetical protein YP_004474296.1 PFAM: Blue (type 1) copper domain; KEGG: pmy:Pmen_2655 blue (type1) copper domain-containing protein YP_004474297.1 PFAM: glutaredoxin; KEGG: pmy:Pmen_2745 glutaredoxin YP_004474298.1 KEGG: psb:Psyr_1123 hypothetical protein YP_004474299.1 PFAM: UspA; KEGG: pfs:PFLU3487 hypothetical protein YP_004474300.1 PFAM: tRNA--hydroxylase; KEGG: pfo:Pfl01_3392 tRNA--hydroxylase YP_004474301.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; HAMAP: UDP-2,3-diacylglucosamine hydrolase; KEGG: pmy:Pmen_2574 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallo-dependent phosphatase YP_004474302.1 KEGG: pmy:Pmen_2573 peptidyl-prolyl cis-trans isomerase, cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004474303.1 PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase, class Ic; HAMAP: glutaminyl-tRNA synthetase, bacterial; KEGG: pmy:Pmen_2572 glutaminyl-tRNA synthetase YP_004474304.1 SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: pmy:Pmen_2571 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004474305.1 PFAM: DNA helicase, UvrD/REP type; KEGG: psa:PST_1951 helicase YP_004474306.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: pmy:Pmen_2048 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004474307.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: pmy:Pmen_2049 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial YP_004474308.1 PFAM: peptidase S14, ClpP; TIGRFAM: peptidase S14, ClpP; HAMAP: peptidase S14, ClpP; KEGG: pap:PSPA7_3496 ATP-dependent Clp protease proteolytic subunit YP_004474309.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: pmy:Pmen_2051 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004474310.1 SMART: peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: peptidase S16, ATP-dependent protease La; KEGG: pmy:Pmen_2052 ATP-dependent protease La; PFAM: peptidase S16, Lon C-terminal; peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004474311.1 manually curated; PFAM: histone-like bacterial DNA-binding protein; KEGG: pmy:Pmen_2053 nucleoid protein HU beta subunit; SMART: histone-like bacterial DNA-binding protein YP_004474312.1 PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: psb:Psyr_1751 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004474313.1 PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal; KEGG: pmy:Pmen_2057 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004474314.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2058 binding-protein-dependent transport systems inner membrane component YP_004474315.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2059 binding-protein-dependent transport systems inner membrane component YP_004474316.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: avn:Avin_29650 oligopeptide ABC transporter periplasmic substrate binding protein YP_004474317.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pmy:Pmen_2061 extracellular solute-binding protein YP_004474318.1 KEGG: pmy:Pmen_2063 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase-like, catalytic; MLTD-N; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup YP_004474319.1 SMART: beta-lactamase-like; TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: pfl:PFL_3299 hydroxyacylglutathione hydrolase, HAMAP: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase-like YP_004474320.1 PFAM: methyltransferase type 11; KEGG: pmy:Pmen_2065 hypothetical protein YP_004474321.1 HAMAP: ribonuclease H; KEGG: psp:PSPPH_1712 ribonuclease H; PFAM: ribonuclease H domain YP_004474322.1 SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: pmy:Pmen_2067 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004474323.1 KEGG: pmy:Pmen_2068 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal YP_004474324.1 PFAM: Crotonase, core; KEGG: pmy:Pmen_2069 enoyl-CoA hydratase YP_004474325.1 KEGG: pmy:Pmen_2070 hypothetical protein YP_004474326.1 HAMAP: NADH pyrophosphatase NudC; KEGG: pfl:PFL_3266 NADH pyrophosphatase; PFAM: NUDIX hydrolase domain; NADH pyrophosphatase-like, N-terminal; Zinc ribbon, NADH pyrophosphatase YP_004474327.1 PFAM: protein of unknown function DUF81; KEGG: pau:PA14_40940 hypothetical protein YP_004474328.1 KEGG: pmy:Pmen_2073 hypothetical protein YP_004474329.1 KEGG: pmy:Pmen_2074 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004474330.1 PFAM: Aminoglycoside phosphotransferase; KEGG: pst:PSPTO_2724 hypothetical protein YP_004474331.1 PFAM: SCP2 sterol-binding domain; KEGG: pmy:Pmen_2532 sterol-binding domain-containing protein YP_004474332.1 KEGG: pmy:Pmen_2531 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1 YP_004474333.1 PFAM: peptidase S49, N-terminal proteobacteria; peptidase S49; KEGG: pfo:Pfl01_3114 periplasmic protease YP_004474334.1 TIGRFAM: Quinone oxidoreductase , YhdH/YhfP; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: psa:PST_2239 oxidoreductase; SMART: polyketide synthase, enoylreductase YP_004474335.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: pmy:Pmen_2146 hypothetical protein YP_004474336.1 KEGG: pmy:Pmen_2147 sulfite reductase (ferredoxin); PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_004474337.1 PFAM: Zinc/iron permease; KEGG: ppf:Pput_3874 zinc/iron permease YP_004474338.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: sit:TM1040_0702 extracellular solute-binding protein YP_004474339.1 PFAM: protein of unknown function DUF1883; KEGG: pfo:Pfl01_2934 hypothetical protein YP_004474340.1 KEGG: rpf:Rpic12D_4921 hypothetical protein YP_004474341.1 KEGG: psa:PST_2224 lipoprotein YP_004474342.1 KEGG: acd:AOLE_18990 hypothetical protein YP_004474343.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: pmy:Pmen_2159 B12-dependent methionine synthase; PFAM: Homocysteine S-methyltransferase; Pterin-binding; methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain YP_004474344.1 PFAM: Fatty acid cis-trans isomerase; KEGG: pmy:Pmen_2160 fatty acid cistrans isomerase YP_004474345.1 PFAM: acyltransferase 3; KEGG: ppg:PputGB1_1984 acyltransferase 3 YP_004474346.1 TIGRFAM: Fe/S biogenesis protein, NfuA; HAMAP: Fe/S biogenesis protein, NfuA; KEGG: pmy:Pmen_2161 HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; NIF system FeS cluster assembly, NifU, C-terminal YP_004474347.1 KEGG: pmy:Pmen_3725 CheC, inhibitor of MCP methylation; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004474348.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: psa:PST_2218 sensory box/GGDEF family protein; SMART: Diguanylate cyclase, predicted; PAS YP_004474349.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pag:PLES_34771 major facilitator superfamily (MFS) transporter YP_004474350.1 KEGG: avi:Avi_3484 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1272 YP_004474351.1 KEGG: pmy:Pmen_2164 transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474352.1 KEGG: pmy:Pmen_2775 DNA topoisomerase YP_004474354.1 KEGG: pmy:Pmen_2165 hypothetical protein YP_004474355.1 KEGG: pag:PLES_24441 hypothetical protein YP_004474356.1 PFAM: peptidase M4, propeptide, PepSY; KEGG: nve:NEMVE_v1g225547 hypothetical protein YP_004474357.1 PFAM: peptidase M4, propeptide, PepSY; KEGG: pag:PLES_24461 lipoprotein YP_004474358.1 KEGG: pmy:Pmen_1995 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004474359.1 KEGG: pmy:Pmen_1996 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain YP_004474360.1 PFAM: NADPH-dependent FMN reductase; KEGG: pmy:Pmen_1997 NADPH-dependent FMN reductase YP_004474361.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: pag:PLES_24511 transporter YP_004474362.1 KEGG: pmy:Pmen_2000 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache, type 2; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474363.1 PFAM: Uncharacterised protein family UPF0118; KEGG: pmy:Pmen_1653 hypothetical protein YP_004474364.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; HAMAP: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: pmy:Pmen_2424 NADH dehydrogenase subunit N YP_004474365.1 TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: pmy:Pmen_2423 NADH dehydrogenase subunit M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004474366.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: pmy:Pmen_2422 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004474367.1 KEGG: avn:Avin_28530 NADH dehydrogenase subunit K; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K YP_004474368.1 KEGG: pmy:Pmen_2420 NADH dehydrogenase subunit J; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YP_004474369.1 PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: pmy:Pmen_2419 NADH dehydrogenase subunit I YP_004474370.1 KEGG: pmy:Pmen_2418 NADH dehydrogenase subunit H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YP_004474371.1 SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: pmy:Pmen_2417 NADH dehydrogenase subunit G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; Molybdopterin oxidoreductase, Fe4S4 domain; Molybdopterin oxidoreductase YP_004474372.1 SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: pmy:Pmen_2416 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004474373.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: pfl:PFL_3900 NADH dehydrogenase subunit E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004474374.1 TIGRFAM: NADH dehydrogenase I, subunit D; NADH dehydrogenase, subunit C; HAMAP: NADH dehydrogenase, subunit C; NAD(P)H-quinone oxidoreductase subunit D/H; NADH dehydrogenase, subunit C/D; KEGG: pmy:Pmen_2414 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; PFAM: NADH-quinone oxidoreductase, subunit D; NADH:ubiquinone oxidoreductase, 30kDa subunit YP_004474375.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: ppw:PputW619_1872 NADH dehydrogenase subunit B YP_004474376.1 KEGG: psp:PSPPH_3109 NADH dehydrogenase subunit A; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004474377.1 KEGG: pap:PSPA7_2573 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004474378.1 PFAM: NolW-like; KEGG: pmy:Pmen_2406 NolW domain-containing protein YP_004474379.1 KEGG: pae:PA2632 hypothetical protein YP_004474380.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_2404 GCN5-related N-acetyltransferase YP_004474381.1 KEGG: pmy:Pmen_2403 cupin 4 family protein; PFAM: cupin; SMART: transcription factor jumonji/aspartyl beta-hydroxylase YP_004474382.1 TIGRFAM: adenylosuccinate lyase; KEGG: pmy:Pmen_2402 adenylosuccinate lyase; PFAM: adenylosuccinate lyase C-terminal/plant; Lyase 1, N-terminal YP_004474383.1 KEGG: ppw:PputW619_3419 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274 YP_004474384.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: pmy:Pmen_2399 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase YP_004474385.1 PFAM: NUDIX hydrolase domain; KEGG: pau:PA14_30160 hypothetical protein YP_004474386.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: ppu:PP_4012 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_004474387.1 TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: pmy:Pmen_2395 cold-shock DNA-binding protein family protein; SMART: Cold shock protein YP_004474388.1 KEGG: pmy:Pmen_2394 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core YP_004474389.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: pmy:Pmen_2393 ATP-dependent Clp protease ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core YP_004474390.1 SMART: RNA-binding domain, S1; TIGRFAM: translation initiation factor IF-1; KEGG: avn:Avin_28260 translation initiation factor IF-1; HAMAP: translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type YP_004474391.1 KEGG: pag:PLES_24871 arginyl-tRNA-protein transferase; HAMAP: arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: arginine-tRNA-protein transferase, C-terminal; arginine-tRNA-protein transferase, N-terminal YP_004474392.1 PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: psb:Psyr_3180 leucyl/phenylalanyl-tRNA--protein transferase YP_004474393.1 TIGRFAM: Thioredoxin reductase; KEGG: pmy:Pmen_2389 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004474394.1 KEGG: pen:PSEEN2212 cell division protein FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma YP_004474395.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: pmy:Pmen_2387 outer-membrane lipoprotein carrier protein; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004474396.1 KEGG: pau:PA14_30320 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004474397.1 KEGG: pfo:Pfl01_3583 camphor resistance protein CrcB; HAMAP: Camphor resistance CrcB protein; PFAM: Camphor resistance CrcB protein YP_004474398.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: psa:PST_2289 seryl-tRNA synthetase YP_004474399.1 PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; HAMAP: Siroheme synthase; KEGG: pmy:Pmen_2383 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase YP_004474400.1 KEGG: pmy:Pmen_2426 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004474401.1 KEGG: pfo:Pfl01_2643 hypothetical protein YP_004474402.1 PFAM: Disulphide bond formation protein DsbB/BdbC; KEGG: bur:Bcep18194_A4133 disulfide bond formation protein B YP_004474403.1 KEGG: pmy:Pmen_2179 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004474404.1 KEGG: pmy:Pmen_2180 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004474405.1 KEGG: pmy:Pmen_2181 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004474406.1 PFAM: Aldehyde dehydrogenase domain; KEGG: cur:cur_2006 aldehyde dehydrogenase YP_004474407.1 KEGG: bur:Bcep18194_B3011 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474408.1 KEGG: psb:Psyr_2579 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004474409.1 PFAM: alanine racemase, N-terminal; KEGG: bur:Bcep18194_B3007 amino acid aldolase or racemase-like YP_004474410.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: psp:PSPPH_2733 TetR family transcriptional regulator YP_004474411.1 PFAM: protein of unknown function DUF2147; KEGG: psp:PSPPH_2734 hypothetical protein YP_004474412.1 KEGG: psp:PSPPH_2735 hypothetical protein YP_004474413.1 KEGG: psp:PSPPH_2736 xylulokinase, PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal YP_004474414.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: psp:PSPPH_2737 aldolase YP_004474415.1 KEGG: psp:PSPPH_2738 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III YP_004474416.1 KEGG: psp:PSPPH_2739 hypothetical protein YP_004474417.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: psp:PSPPH_2740 transmembrane protein YP_004474418.1 KEGG: xcv:XCV2086 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474419.1 KEGG: xcv:XCV2088 FAD containing monooxygenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004474420.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: xcv:XCV2087 short chain dehydrogenase YP_004474421.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pau:PA14_32410 transcriptional regulator MexT YP_004474422.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: pmy:Pmen_2184 alcohol dehydrogenase; SMART: polyketide synthase, enoylreductase YP_004474423.1 KEGG: ppw:PputW619_2784 LacI family transcription regulator; PFAM: substrate-binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004474424.1 KEGG: psp:PSPPH_3258 gluconokinase, TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase YP_004474425.1 KEGG: eca:ECA4158 gluconate permease; TIGRFAM: gluconate transporter; PFAM: gluconate transporter YP_004474426.1 KEGG: pmy:Pmen_0228 hypothetical protein YP_004474427.1 KEGG: pmy:Pmen_0229 metal dependent phosphohydrolase; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004474428.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pfl:PFL_3459 acetyltransferase YP_004474429.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pfl:PFL_2966 TetR family transcriptional regulator YP_004474430.1 PFAM: Crotonase, core; KEGG: pay:PAU_01915 hypothetical protein YP_004474431.1 KEGG: lbf:LBF_0864 phytoene dehydrogenase-like protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004474432.1 PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; ferredoxin; KEGG: lbf:LBF_0865 flavodoxin reductase YP_004474433.1 KEGG: abm:ABSDF2037 hypothetical protein YP_004474434.1 KEGG: avn:Avin_29220 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004474435.1 PFAM: ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: ddc:Dd586_2574 dimethylmenaquinone methyltransferase YP_004474436.1 PFAM: FhuF/siderophore biosynthesis protein; KEGG: psp:PSPPH_2761 hypothetical protein YP_004474437.1 PFAM: ABC transporter-like; KEGG: psb:Psyr_2593 ABC transporter; SMART: ATPase, AAA+ type, core YP_004474438.1 PFAM: ABC transporter permease; KEGG: psb:Psyr_2592 ABC transporter permease YP_004474439.1 PFAM: ABC transporter permease; KEGG: psp:PSPPH_2758 achromobactin ABC transporter permease CbrB YP_004474440.1 PFAM: substrate-binding protein; KEGG: psp:PSPPH_2757 achromobactin-binding periplasmic protein precursor YP_004474441.1 PFAM: Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal; KEGG: psb:Psyr_2589 IucA/IucC YP_004474442.1 PFAM: Aldehyde-lyase domain; KEGG: psb:Psyr_2588 HpcH/HpaI aldolase YP_004474443.1 PFAM: Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal; KEGG: psp:PSPPH_2754 achromobactin biosynthetic protein AcsC YP_004474444.1 KEGG: psb:Psyr_2586 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004474445.1 KEGG: psp:PSPPH_2752 hypothetical protein; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004474446.1 PFAM: Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal; KEGG: psp:PSPPH_2751 achromobactin biosynthetic protein AcsD YP_004474447.1 TIGRFAM: diaminobutyrate-2-oxoglutarate transaminase; KEGG: psp:PSPPH_2750 diaminobutyrate--2-oxoglutarate aminotransferase; PFAM: Aminotransferase class-III YP_004474448.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: pfs:PFLU4093 ferric siderophore receptor; SMART: Secretin/TonB, short N-terminal YP_004474449.1 PFAM: FecR protein; KEGG: psp:PSPPH_2748 PupR protein YP_004474450.1 KEGG: pfs:PFLU2787 heme uptake regulator; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004474451.1 KEGG: psb:Psyr_0793 hypothetical protein YP_004474452.1 PFAM: polyprenyl synthetase; KEGG: esa:ESA_00347 hypothetical protein YP_004474453.1 TIGRFAM: Isopentenyl-diphosphate delta-isomerase, FMN-dependent; HAMAP: Isopentenyl-diphosphate delta-isomerase, FMN-dependent; KEGG: mlo:mlr6371 isopentenyl pyrophosphate isomerase YP_004474454.1 KEGG: psa:PST_3875 zeaxanthin glucosyl transferase; TIGRFAM: UDP-glycosyltransferase, MGT; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase YP_004474455.1 KEGG: esa:ESA_00344 hypothetical protein; TIGRFAM: Lycopene cyclase; Lycopene cyclase, beta/epsilon; PFAM: Lycopene cyclase-type, FAD-binding YP_004474456.1 KEGG: psa:PST_3873 phytoene desaturase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Amine oxidase YP_004474457.1 KEGG: ctu:Ctu_35440 phytoene synthase; PFAM: Squalene/phytoene synthase YP_004474458.1 PFAM: Fatty acid hydroxylase; KEGG: psa:PST_3871 beta-carotene hydroxylase YP_004474459.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: avn:Avin_24990 UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase YP_004474460.1 KEGG: pmy:Pmen_2276 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004474461.1 KEGG: pap:PSPA7_3163 hypothetical protein YP_004474462.1 KEGG: pmy:Pmen_3096 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004474463.1 KEGG: pmy:Pmen_4316 sulfate ABC transporter inner membrane subunit CysW; TIGRFAM: Sulphate ABC transporter permease CysW; Sulphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004474464.1 KEGG: pmy:Pmen_4317 sulfate ABC transporter inner membrane subunit CysT; TIGRFAM: Sulphate ABC transporter permease CysT; Sulphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004474465.1 KEGG: pmy:Pmen_4318 sulfate ABC transporter periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004474466.1 PFAM: formate/nitrite transporter; KEGG: psp:PSPPH_3039 transporter YP_004474467.1 KEGG: psp:PSPPH_0323 ABC transporter substrate-binding protein YP_004474468.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_0140 ABC transporter permease YP_004474469.1 PFAM: ABC transporter-like; KEGG: pfo:Pfl01_0139 ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004474470.1 KEGG: pfl:PFL_0138 ABC transporter substrate-binding protein YP_004474471.1 KEGG: psb:Psyr_0337 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA YP_004474472.1 PFAM: NLPA lipoprotein; KEGG: pau:PA14_13010 hypothetical protein YP_004474473.1 TIGRFAM: Pyridoxal phosphate-dependent deaminase; KEGG: psa:PST_2349 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004474474.1 KEGG: pmy:Pmen_2009 cystine transporter subunit; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004474475.1 KEGG: psa:PST_2351 cystine ABC transporter permease, TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004474476.1 PFAM: ABC transporter-like; KEGG: hch:HCH_03756 amino-acid ABC transporter ATP-binding protein YecC; SMART: ATPase, AAA+ type, core YP_004474477.1 PFAM: Uncharacterised protein family UPF0126; KEGG: pmy:Pmen_2350 hypothetical protein YP_004474478.1 KEGG: pmy:Pmen_2351 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004474479.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pag:PLES_32991 ring-cleaving dioxygenase YP_004474480.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: avn:Avin_24990 UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase YP_004474481.1 KEGG: pfo:Pfl01_4133 hypothetical protein YP_004474482.1 PFAM: nucleoside-specific channel-forming protein, Tsx-like; KEGG: aau:AAur_pTC10205 hypothetical protein YP_004474483.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_2197 GCN5-related N-acetyltransferase YP_004474484.1 PFAM: protein of unknown function DUF883, ElaB; KEGG: pap:PSPA7_4067 hypothetical protein YP_004474485.1 KEGG: psb:Psyr_4492 hypothetical protein YP_004474486.1 PFAM: protein of unknown function DUF1652; KEGG: pfl:PFL_3692 hypothetical protein YP_004474487.1 KEGG: pmy:Pmen_2299 hypothetical protein YP_004474488.1 KEGG: api:100160041 similar to AGAP007975-PA YP_004474489.1 KEGG: psa:PST_1379 alginate biosynthesis transcriptional activator YP_004474490.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: pmy:Pmen_2373 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004474491.1 KEGG: pmy:Pmen_2374 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; Helix-hairpin-helix motif; manually curated; TIGRFAM: Excinuclease ABC, C subunit; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; HAMAP: Excinuclease ABC, C subunit YP_004474492.1 manually curated; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; KEGG: psb:Psyr_2897 LuxR response regulator receiver; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004474495.1 PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: pmy:Pmen_2376 hypothetical protein YP_004474496.1 PFAM: Lipid-binding START; KEGG: pfl:PFL_1827 hypothetical protein YP_004474497.1 PFAM: Uncharacterised protein family UPF0153; KEGG: pfo:Pfl01_4110 hypothetical protein YP_004474498.1 KEGG: hch:HCH_01618 signal transduction histidine kinase regulating C4-dicarboxylate transport system; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004474499.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: shn:Shewana3_0868 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain YP_004474500.1 KEGG: pmy:Pmen_2512 exonuclease, RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease YP_004474501.1 KEGG: pmy:Pmen_2513 hypothetical protein; HAMAP: protein of unknown function DUF1255; PFAM: protein of unknown function DUF1255 YP_004474502.1 PFAM: protein of unknown function DUF1289; KEGG: pmy:Pmen_2577 hypothetical protein YP_004474503.1 KEGG: pmy:Pmen_2578 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: Aconitase B, bacterial; PFAM: Aconitase B, N-terminal, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004474504.1 PFAM: Pyridoxal phosphate-dependent decarboxylase; KEGG: bcj:BCAM0359 pyridoxal-dependent decarboxylase YP_004474505.1 KEGG: pde:Pden_3450 beta-lactamase; PFAM: beta-lactamase-related YP_004474506.1 KEGG: pmy:Pmen_2583 aminotransferase; PFAM: Aminotransferase, class I/classII YP_004474507.1 KEGG: pfo:Pfl01_3077 sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold-4; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS YP_004474508.1 PFAM: Divalent ion symporter; KEGG: pen:PSEEN3157 hypothetical protein YP_004474509.1 KEGG: psa:PST_0861 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004474510.1 TIGRFAM: acetoacetyl-CoA synthase; KEGG: pmy:Pmen_2028 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase YP_004474511.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2027 amino acid ABC transporter periplasmic protein YP_004474512.1 KEGG: pap:PSPA7_4153 hypothetical protein YP_004474513.1 KEGG: pzu:PHZ_c2663 DJ-1/PfpI family protein YP_004474514.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: pmy:Pmen_2026 twitching motility protein; SMART: ATPase, AAA+ type, core YP_004474515.1 PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: pmy:Pmen_2025 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004474516.1 KEGG: pmy:Pmen_2023 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004474517.1 KEGG: pmy:Pmen_2020 hypothetical protein; HAMAP: Uncharacterised protein family UPF0753; PFAM: Uncharacterised protein family UPF0753 YP_004474518.1 KEGG: pmy:Pmen_2019 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004474519.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: pmy:Pmen_2018 LysR family transcriptional regulator YP_004474520.1 PFAM: Rhodanese-like; KEGG: gbe:GbCGDNIH1_0971 3-mercaptopyruvate sulfurtransferase; SMART: Rhodanese-like YP_004474521.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_4329 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004474522.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_4330 binding-protein-dependent transport systems inner membrane component YP_004474523.1 TIGRFAM: ABC transporter substrate-binding protein, aliphatic sulphonates; KEGG: pmy:Pmen_4331 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein YP_004474524.1 PFAM: Outer membrane porin, bacterial; KEGG: pmy:Pmen_4332 outer membrane porin YP_004474525.1 KEGG: pmy:Pmen_4333 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; TIGRFAM: ABC transporter substrate-binding protein, aliphatic sulphonates; SMART: Extracellular solute-binding protein, family 3 YP_004474526.1 PFAM: acyl-CoA dehydrogenase, type 2, C-terminal; acyl-CoA dehydrogenase, N-terminal; KEGG: pmy:Pmen_4334 acyl-CoA dehydrogenase type 2 YP_004474527.1 PFAM: acyl-CoA dehydrogenase, type 2, C-terminal; acyl-CoA dehydrogenase, N-terminal; KEGG: pmy:Pmen_2361 acyl-CoA dehydrogenase type 2 YP_004474528.1 PFAM: acyl-CoA dehydrogenase, type 2, C-terminal; acyl-CoA dehydrogenase, N-terminal; KEGG: pmy:Pmen_2362 acyl-CoA dehydrogenase type 2 YP_004474529.1 TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: pmy:Pmen_2363 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein YP_004474530.1 PFAM: NLPA lipoprotein; KEGG: pmy:Pmen_2364 NlpA lipoprotein YP_004474531.1 PFAM: ABC transporter-like; NIL domain; KEGG: pmy:Pmen_2365 ABC transporter related; SMART: ATPase, AAA+ type, core; NIL domain YP_004474532.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2366 binding-protein-dependent transport systems inner membrane component YP_004474533.1 TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: pfo:Pfl01_2800 hypothetical protein YP_004474534.1 KEGG: hch:HCH_03054 AraC-type DNA-binding domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474535.1 KEGG: psa:PST_0170 non-heme chloroperoxidase; PFAM: Alpha/beta hydrolase fold-1 YP_004474536.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ctt:CtCNB1_2264 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004474537.1 KEGG: pfo:Pfl01_3289 hypothetical protein YP_004474538.1 KEGG: ppu:PP_2526 hypothetical protein YP_004474539.1 KEGG: gur:Gura_2965 phosphoenolpyruvate-protein phosphotransferase YP_004474540.1 KEGG: mdo:100013977 similar to serine/threonine kinase YP_004474541.1 KEGG: pmy:Pmen_2003 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004474542.1 HAMAP: Chaperone protein HtpG; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; KEGG: pag:PLES_37311 heat shock protein 90; SMART: ATPase-like, ATP-binding domain YP_004474543.1 KEGG: pmy:Pmen_2492 hypothetical protein YP_004474544.1 KEGG: ppf:Pput_1686 hypothetical protein YP_004474545.1 KEGG: nve:NEMVE_v1g224810 hypothetical protein YP_004474546.1 PFAM: protein of unknown function DUF599; KEGG: pmy:Pmen_2497 hypothetical protein YP_004474547.1 KEGG: psp:PSPPH_1985 branched-chain amino acid transport system II carrier protein; TIGRFAM: Branched-chain amino acid transport system II carrier protein; PFAM: Branched-chain amino acid transport system II carrier protein YP_004474548.1 SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: pag:PLES_37381 succinyl-CoA synthetase subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding YP_004474549.1 PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; KEGG: pfl:PFL_1721 succinyl-CoA synthetase subunit beta YP_004474550.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: pmy:Pmen_2501 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004474551.1 TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: pmy:Pmen_2502 dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004474552.1 SMART: transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: pmy:Pmen_2503 2-oxoglutarate dehydrogenase E1 component; PFAM: transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component YP_004474553.1 KEGG: pfs:PFLU1819 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein YP_004474554.1 TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: pmy:Pmen_2505 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004474555.1 TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; KEGG: pmy:Pmen_2506 succinate dehydrogenase subunit D YP_004474556.1 manually curated; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; KEGG: pmy:Pmen_2507 succinate dehydrogenase subunit C; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit YP_004474557.1 KEGG: pmy:Pmen_2508 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like YP_004474558.1 KEGG: pen:PSEEN2223 sulfur transfer complex subunit TusD; TIGRFAM: Sulphur relay, TusD/DsrE; PFAM: Sulphur relay, DsrE/F-like protein YP_004474559.1 KEGG: pmy:Pmen_2378 sulfur relay protein TusC; TIGRFAM: Sulphur relay, TusC/DsrF; PFAM: Sulphur relay, DsrE/F-like protein YP_004474560.1 KEGG: pfl:PFL_3871 DsrH family protein; TIGRFAM: Sulphur relay, TusB/DsrH; PFAM: Sulphur relay, TusB/DsrH YP_004474561.1 KEGG: pfo:Pfl01_3578 DsrC-like protein; TIGRFAM: DsrC-like protein; PFAM: DsrC-like protein YP_004474562.1 PFAM: glycosyl transferase, family 3, N-terminal; KEGG: pmy:Pmen_2381 hypothetical protein YP_004474563.1 KEGG: pfl:PFL_3874 glutathione S-transferase domain-containing protein; PFAM: glutathione S-transferase, C-terminal YP_004474564.1 KEGG: pmy:Pmen_2428 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004474565.1 PFAM: Acriflavin resistance protein; KEGG: pmy:Pmen_2429 acriflavin resistance protein YP_004474566.1 PFAM: Acriflavin resistance protein; KEGG: pmy:Pmen_2430 acriflavin resistance protein YP_004474567.1 KEGG: pmy:Pmen_2431 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004474568.1 PFAM: SMP-30/gluconolaconase/LRE-like region; KEGG: jan:Jann_3831 senescence marker protein-30 (SMP-30) YP_004474569.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: rsp:RSP_1371 2-keto-3-deoxygalactonate kinase YP_004474570.1 KEGG: mmw:Mmwyl1_4105 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004474571.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mmw:Mmwyl1_4106 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004474572.1 PFAM: ABC transporter permease; KEGG: mmw:Mmwyl1_4108 monosaccharide-transporting ATPase YP_004474573.1 PFAM: ABC transporter-like; KEGG: mes:Meso_0839 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004474574.1 KEGG: mmw:Mmwyl1_4110 monosaccharide-transporting ATPase YP_004474575.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mmw:Mmwyl1_4103 LysR family transcriptional regulator YP_004474576.1 KEGG: pfl:PFL_2858 thiol peroxidase; HAMAP: thiol peroxidase Tpx; PFAM: Redoxin YP_004474577.1 KEGG: psp:PSPPH_2637 hypothetical protein; manually curated; PFAM: protein of unknown function DUF490 YP_004474578.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: psb:Psyr_2478 surface antigen (D15):surface antigen variable number YP_004474579.1 TIGRFAM: AP endonuclease, family 1; exodeoxyribonuclease III xth; KEGG: pap:PSPA7_2692 exonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_004474580.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pmy:Pmen_2437 OmpA/MotB domain-containing protein YP_004474581.1 KEGG: pmy:Pmen_2438 integral membrane protein TerC; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC YP_004474582.1 KEGG: pap:PSPA7_2687 hypothetical protein YP_004474583.1 KEGG: pmy:Pmen_2439 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA oxidase/dehydrogenase, central domain; acyl-CoA dehydrogenase, N-terminal YP_004474584.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pau:PA14_31560 LysR family transcriptional regulator YP_004474585.1 KEGG: pmy:Pmen_2107 hypothetical protein YP_004474586.1 KEGG: pmy:Pmen_2106 hypothetical protein YP_004474587.1 PFAM: Outer membrane porin F; Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pmy:Pmen_2092 OmpF family protein YP_004474588.1 KEGG: pfl:PFL_1875 RNA polymerase sigma factor SigX; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004474589.1 PFAM: Conserved TM helix; Mechanosensitive ion channel MscS; KEGG: pmy:Pmen_2090 TM helix repeat-containing protein YP_004474590.1 KEGG: pfl:PFL_1873 CrfX protein YP_004474591.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: pfs:PFLU4616 zinc transport protein YP_004474592.1 TIGRFAM: ribonuclease E inhibitor RraA; HAMAP: ribonuclease E inhibitor RraA; KEGG: pfs:PFLU4617 ribonuclease activity regulator protein RraA; PFAM: ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YP_004474593.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pfl:PFL_1870 esterase/lipase/thioesterase YP_004474594.1 TIGRFAM: phosphoenolpyruvate synthase; KEGG: pmy:Pmen_2085 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme YP_004474595.1 KEGG: psa:PST_2038 hypothetical protein; HAMAP: protein of unknown function DUF299, phosphotransferase, predicted; PFAM: protein of unknown function DUF299, phosphotransferase, predicted YP_004474596.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0891 lysine exporter protein (LysE/YggA) YP_004474597.1 KEGG: pmy:Pmen_2083 methylitaconate delta2-delta3-isomerase; TIGRFAM: PrpF, AcnD-accessory; PFAM: PrpF protein YP_004474598.1 TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: pmy:Pmen_2082 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004474599.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: pmy:Pmen_2081 methylcitrate synthase; PFAM: Citrate synthase-like YP_004474600.1 TIGRFAM: methylisocitrate lyase; KEGG: pmy:Pmen_2080 2-methylisocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004474601.1 KEGG: pmy:Pmen_2079 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004474602.1 PFAM: protein of unknown function DUF785; KEGG: pfl:PFL_1859 hypothetical protein YP_004474603.1 KEGG: pmy:Pmen_2077 hypothetical protein YP_004474604.1 KEGG: pmy:Pmen_2076 alpha-L-glutamate ligase-like protein; TIGRFAM: Alpha-L-glutamate ligase-related protein; PFAM: ATP-grasp fold, RimK-type YP_004474605.1 KEGG: pmy:Pmen_2545 phosphoadenylylsulfate reductase (thioredoxin); PFAM: phosphoadenosine phosphosulphate reductase YP_004474606.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_2546 transcriptional regulator CysB YP_004474607.1 PFAM: UspA; KEGG: pmy:Pmen_2547 UspA domain-containing protein YP_004474608.1 manually curated; KEGG: pfo:Pfl01_4007 hypothetical protein YP_004474609.1 PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_2551 type IV pilus assembly PilZ YP_004474610.1 TIGRFAM: DHAP synthase, class 1; KEGG: pmy:Pmen_2552 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004474611.1 KEGG: pfo:Pfl01_4010 hypothetical protein YP_004474612.1 KEGG: pmy:Pmen_2555 hypothetical protein YP_004474613.1 PFAM: YkuD domain; KEGG: pmy:Pmen_2556 ErfK/YbiS/YcfS/YnhG family protein YP_004474614.1 KEGG: pmy:Pmen_2557 hypothetical protein YP_004474615.1 KEGG: pmy:Pmen_2558 lysophospholipase; PFAM: Lipase, GDSL YP_004474616.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_2559 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004474617.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: pmy:Pmen_2560 hypothetical protein YP_004474618.1 TIGRFAM: transcription elongation factor GreB; HAMAP: transcription elongation factor greA; KEGG: psa:PST_2017 transcription elongation factor GreB; PFAM: transcription elongation factor, GreA/GreB, N-terminal; transcription elongation factor, GreA/GreB, C-terminal YP_004474619.1 KEGG: pap:PSPA7_2294 hypothetical protein YP_004474620.1 PFAM: Uncharacterised protein family YphA; KEGG: pmy:Pmen_2441 DoxX family protein YP_004474621.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: pmy:Pmen_2442 lytic transglycosylase, catalytic YP_004474622.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: pen:PSEEN1879 TatD family deoxyribonuclease YP_004474623.1 KEGG: pfs:PFLU1687 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474624.1 KEGG: gau:GAU_3862 hypothetical protein YP_004474625.1 KEGG: pmy:Pmen_2446 acyl-CoA thioesterase-like protein YP_004474626.1 KEGG: pfl:PFL_4290 hypothetical protein; PFAM: CHAD; SMART: CHAD YP_004474627.1 KEGG: pmy:Pmen_2448 transglutaminase; PFAM: transglutaminase-like; SMART: transglutaminase-like YP_004474628.1 PFAM: Domain of unknown function DUF58; KEGG: pmy:Pmen_2449 hypothetical protein YP_004474629.1 PFAM: ATPase, AAA-3; KEGG: pmy:Pmen_2450 ATPase YP_004474630.1 KEGG: pmy:Pmen_2451 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474631.1 KEGG: amr:AM1_3430 hypothetical protein YP_004474632.1 KEGG: pmy:Pmen_2452 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_004474633.1 KEGG: pfl:PFL_4291 lipoprotein YP_004474634.1 PFAM: Patatin/phospholipase A2-related; KEGG: pmy:Pmen_2456 patatin YP_004474635.1 PFAM: Uncharacterised protein family UPF0118; KEGG: pmy:Pmen_2457 hypothetical protein YP_004474636.1 KEGG: pmy:Pmen_2458 hypothetical protein YP_004474637.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_2459 alpha/beta hydrolase fold YP_004474638.1 KEGG: pmy:Pmen_2460 alpha/beta hydrolase fold YP_004474639.1 KEGG: pfs:PFLU1844 thioesterase; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004474640.1 TIGRFAM: phosphohistidine phosphatase SixA, subgroup; PFAM: histidine phosphatase superfamily, clade-1; KEGG: pmy:Pmen_2465 phosphohistidine phosphatase, SixA; SMART: histidine phosphatase superfamily, clade-1 YP_004474641.1 KEGG: pap:PSPA7_3658 lipase YP_004474642.1 KEGG: pfs:PFLU1840 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: glycerol-3-phosphate dehydrogenase, NAD-dependent; PFAM: glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal YP_004474643.1 KEGG: pfs:PFLU1838 hypothetical protein YP_004474644.1 KEGG: pmy:Pmen_2468 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004474645.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; HAMAP: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: psa:PST_1893 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_004474646.1 PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal; KEGG: pap:PSPA7_3665 3-oxoacyl-(acyl carrier protein) synthase I; SMART: polyketide synthase, beta-ketoacyl synthase domain YP_004474647.1 KEGG: pmy:Pmen_2481 hypothetical protein YP_004474648.1 PFAM: Amidohydrolase 2; KEGG: pmy:Pmen_2482 amidohydrolase 2 YP_004474649.1 KEGG: pmy:Pmen_2487 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004474650.1 PFAM: Anti-sigma K factor RskA; KEGG: pmy:Pmen_2488 hypothetical protein YP_004474651.1 KEGG: pmy:Pmen_2489 hypothetical protein YP_004474652.1 PFAM: Dienelactone hydrolase; KEGG: pmy:Pmen_2490 dienelactone hydrolase YP_004474653.1 KEGG: pmy:Pmen_2002 azoreductase; HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004474654.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN2930 LysR family transcriptional regulator YP_004474655.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pap:PSPA7_3302 major facilitator superfamily transporter YP_004474656.1 KEGG: psa:PST_2172 hypothetical protein YP_004474657.1 KEGG: pmy:Pmen_2176 hypothetical protein; PFAM: protein of unknown function DUF1294; Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004474658.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: pmy:Pmen_2175 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA YP_004474659.1 KEGG: pau:PA14_39200 transporter; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004474660.1 KEGG: pmy:Pmen_2171 NAD metabolism ATPase/kinase-like protein YP_004474661.1 KEGG: pmy:Pmen_2167 hypothetical protein YP_004474662.1 KEGG: pmy:Pmen_2166 hypothetical protein YP_004474663.1 KEGG: pmy:Pmen_1990 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related YP_004474664.1 PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: ppf:Pput_3288 3-dehydroquinate dehydratase YP_004474665.1 HAMAP: Shikimate, quinate/shikimate dehydrogenase; KEGG: pfl:PFL_5382 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004474666.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pfo:Pfl01_4904 TetR family transcriptional regulator YP_004474667.1 KEGG: psp:PSPPH_2105 4-hydroxyphenylpyruvate dioxygenase, PFAM: Xylose isomerase, TIM barrel domain; Glyoxalase/bleomycin resistance protein/dioxygenase YP_004474668.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppw:PputW619_2224 major facilitator transporter YP_004474669.1 PFAM: Drug/metabolite transporter; KEGG: pfs:PFLU5369 hypothetical protein YP_004474670.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: pfl:PFL_5391 hypothetical protein YP_004474671.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: avn:Avin_30210 oxidoreductase YP_004474672.1 KEGG: ppg:PputGB1_3242 IclR family transcriptional regulator; PFAM: transcription regulator IclR, N-terminal; transcription regulator IclR, C-terminal; SMART: transcription regulator IclR, N-terminal YP_004474674.1 KEGG: csa:Csal_0290 hypothetical protein YP_004474675.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: csa:Csal_0289 hypothetical protein YP_004474676.1 KEGG: csa:Csal_0291 hypothetical protein YP_004474677.1 PFAM: Outer membrane porin, bacterial; KEGG: ppg:PputGB1_4239 outer membrane porin YP_004474678.1 KEGG: pmy:Pmen_2650 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474679.1 KEGG: pmy:Pmen_2651 histone family protein DNA-binding protein; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein YP_004474680.1 KEGG: psb:Psyr_1179 OPT superfamily oligopeptide transporter; TIGRFAM: oligopeptide transporter OPT superfamily; PFAM: oligopeptide transporter OPT superfamily YP_004474681.1 SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: pmy:Pmen_2746 NAD-dependent DNA ligase LigA; HAMAP: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; BRCT YP_004474682.1 SMART: ZipA, C-terminal FtsZ-binding domain; TIGRFAM: Cell division protein ZipA; KEGG: pmy:Pmen_2747 cell division protein ZipA; HAMAP: Cell division protein zipA-like protein; PFAM: ZipA, C-terminal FtsZ-binding domain YP_004474683.1 TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; SMCs flexible hinge; KEGG: pmy:Pmen_2748 condensin subunit Smc; SMART: SMCs flexible hinge YP_004474684.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pst:PSPTO_2467 major facilitator family transporter YP_004474685.1 TIGRFAM: Guanine deaminase; KEGG: pmy:Pmen_2754 guanine deaminase; PFAM: Amidohydrolase 1 YP_004474686.1 KEGG: etr:ETAE_1966 ABC transporter-related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004474687.1 PFAM: ABC transporter permease; KEGG: sno:Snov_3327 ABC transporter permease YP_004474688.1 KEGG: spe:Spro_2140 substrate-binding protein YP_004474689.1 KEGG: psa:PST_3106 NAD-dependent aldehyde dehydrogenase; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function DUF2383 YP_004474690.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: pmy:Pmen_2766 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004474691.1 KEGG: pmy:Pmen_2264 hypothetical protein YP_004474692.1 PFAM: protein of unknown function DUF2231, transmembrane; KEGG: pmy:Pmen_2265 membrane protein-like protein YP_004474693.1 manually curated; TIGRFAM: Cytochrome c oxidase, subunit II; KEGG: pmy:Pmen_2266 cytochrome c, monohaem; PFAM: Cytochrome c oxidase subunit II C-terminal YP_004474694.1 KEGG: pmy:Pmen_2267 cytochrome-c oxidase; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I YP_004474695.1 KEGG: pmy:Pmen_2268 hypothetical protein YP_004474696.1 KEGG: pfo:Pfl01_4287 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474697.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_2913 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004474698.1 KEGG: pag:PLES_44261 arginine/ornithine transport protein AotM; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004474699.1 KEGG: pmy:Pmen_2915 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004474700.1 TIGRFAM: Lysine-arginine-ornithine-binding periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: pmy:Pmen_2916 cationic amino acid ABC transporter substrate-binding protein; SMART: Extracellular solute-binding protein, family 3 YP_004474701.1 PFAM: AMP-dependent synthetase/ligase; TIGRFAM: acetate-CoA ligase; HAMAP: acetate-CoA ligase; KEGG: pmy:Pmen_3109 acetyl-CoA synthetase YP_004474702.1 KEGG: pmy:Pmen_1798 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain YP_004474703.1 KEGG: psa:PST_0076 C4-dicarboxylate transporter; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004474704.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pau:PA14_68280 dicarboxylate transporter YP_004474705.1 KEGG: psa:PST_1720 C4-dicarboxylate-binding protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004474706.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psa:PST_1718 LysR family transcriptional regulator YP_004474707.1 KEGG: psa:PST_1717 CaiB/BaiF family protein; PFAM: CoA-transferase III YP_004474708.1 KEGG: psa:PST_1716 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase YP_004474709.1 KEGG: psb:Psyr_1731 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004474710.1 PFAM: Secretion protein HlyD; KEGG: pap:PSPA7_5897 multidrug resistance protein YP_004474711.1 KEGG: pfl:PFL_3918 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004474712.1 KEGG: pfo:Pfl01_3645 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004474713.1 PFAM: Nitroreductase-like; KEGG: cti:RALTA_B0594 oxidoreductase YP_004474714.1 KEGG: psa:PST_1699 C4-dicarboxylate-binding periplasmic protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004474715.1 PFAM: Aldehyde-lyase domain; KEGG: psa:PST_1698 citrate lyase beta chain YP_004474716.1 KEGG: psa:PST_1697 CaiB/BaiF family protein; PFAM: CoA-transferase III YP_004474717.1 PFAM: MmgE/PrpD; KEGG: psa:PST_1696 hypothetical protein YP_004474718.1 KEGG: psa:PST_1694 acyl-CoA dehydrogenase; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain YP_004474719.1 KEGG: psa:PST_1693 hypothetical protein YP_004474720.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_2646 LysR family transcriptional regulator YP_004474721.1 PFAM: Curli production assembly/transport component CsgG; KEGG: pap:PSPA7_0048 lipoprotein YP_004474722.1 KEGG: pfl:PFL_3695 lipoprotein YP_004474723.1 PFAM: protein of unknown function DUF799; KEGG: dze:Dd1591_4223 protein of unknown function DUF799 YP_004474724.1 KEGG: pfo:Pfl01_1500 transcriptional regulator TyrR; PFAM: RNA polymerase sigma factor 54, interaction; Amino acid-binding ACT; PAS fold; SMART: PAS; ATPase, AAA+ type, core YP_004474725.1 TIGRFAM: Phenylalanine-4-hydroxylase, monomeric form; KEGG: ppg:PputGB1_3995 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase, C-terminal YP_004474726.1 KEGG: pag:PLES_44451 pterin-4-alpha-carbinolamine dehydratase; HAMAP: transcriptional coactivator/pterin dehydratase; PFAM: transcriptional coactivator/pterin dehydratase YP_004474727.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_3119 major facilitator transporter YP_004474728.1 KEGG: pmy:Pmen_3120 glucosylglycerol-phosphate synthase; TIGRFAM: glucosylglycerol-phosphate synthase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase, family 20; Sucrose-phosphate synthase YP_004474729.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase; KEGG: pmy:Pmen_4583 precorrin 6A synthase; PFAM: Tetrapyrrole methylase YP_004474730.1 TIGRFAM: ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: pmy:Pmen_2739 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: methyltransferase small YP_004474731.1 PFAM: Isochorismatase-like; KEGG: pmy:Pmen_2741 isochorismatase hydrolase YP_004474732.1 KEGG: pmy:Pmen_2742 hypothetical protein YP_004474733.1 KEGG: pmy:Pmen_2743 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal YP_004474734.1 SMART: Elongation factor P, C-terminal; TIGRFAM: translation elongation factor P; KEGG: pmy:Pmen_2130 translation initiation factor 5A (eIF-5A); HAMAP: translation elongation factor P; PFAM: Elongation factor P, C-terminal; translation elongation factor, KOW-like; translation elongation factor P/YeiP, central YP_004474735.1 KEGG: avn:Avin_15270 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557 YP_004474736.1 PFAM: Major facilitator superfamily MFS-1; KEGG: hel:HELO_3140 major facilitator superfamily transporter YP_004474737.1 PFAM: histidine phosphatase superfamily, clade-1; KEGG: pfo:Pfl01_0729 phosphoglycerate/bisphosphoglycerate mutase YP_004474738.1 PFAM: Crotonase, core; KEGG: pmy:Pmen_2108 enoyl-CoA hydratase YP_004474739.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: pfs:PFLU4659 metal ion transport protein YP_004474740.1 PFAM: ABC transporter; KEGG: pmy:Pmen_1920 ABC transporter YP_004474741.1 PFAM: ABC transporter-like; KEGG: pfo:Pfl01_4181 ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004474742.1 PFAM: glutathione S-transferase, N-terminal; glutathione S-transferase, C-terminal; KEGG: pag:PLES_22591 glutathione S-transferase YP_004474743.1 PFAM: acyl-CoA dehydrogenase, C-termina, bacterial type; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pfl:PFL_1769 acyl-CoA dehydrogenase YP_004474744.1 KEGG: pmy:Pmen_1916 hypothetical protein YP_004474745.1 KEGG: pmy:Pmen_1915 hypothetical protein YP_004474746.1 PFAM: GAF; KEGG: pmy:Pmen_1913 GAF sensor protein YP_004474747.1 PFAM: Domain of unknown function DUF815; KEGG: pap:PSPA7_2332 hypothetical protein YP_004474748.1 KEGG: pmy:Pmen_1911 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004474749.1 KEGG: pfo:Pfl01_3980 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004474750.1 KEGG: pag:PLES_22391 glutathione peroxidase; PFAM: glutathione peroxidase YP_004474751.1 PFAM: methionine sulphoxide reductase B; TIGRFAM: methionine sulphoxide reductase B; HAMAP: methionine sulphoxide reductase B; KEGG: pmy:Pmen_2521 methionine sulfoxide reductase B YP_004474752.1 KEGG: pmy:Pmen_2522 aminotransferase AlaT; PFAM: Aminotransferase, class I/classII YP_004474753.1 KEGG: pmy:Pmen_2523 hypothetical protein YP_004474754.1 KEGG: pmy:Pmen_2524 heat shock protein HtpX; HAMAP: peptidase M48, protease HtpX, PFAM: peptidase M48 YP_004474755.1 PFAM: Thiopurine S-methyltransferase; TIGRFAM: Thiopurine S-methyltransferase, Se/Te detoxification; KEGG: pfo:Pfl01_3985 thiopurine S-methyltransferase; HAMAP: Thiopurine S-methyltransferase YP_004474756.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pfl:PFL_4250 aromatic ring-opening dioxygenase YP_004474757.1 TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: pmy:Pmen_2540 aminodeoxychorismate synthase, subunit I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004474758.1 KEGG: pmy:Pmen_2144 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004474759.1 PFAM: protein of unknown function DUF1486; KEGG: bcj:BCAM1782 hypothetical protein YP_004474760.1 KEGG: pmy:Pmen_2143 spermidine synthase-like protein YP_004474761.1 TIGRFAM: DAHP synthetase, class II; KEGG: pfo:Pfl01_3990 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; PFAM: DAHP synthetase, class II YP_004474762.1 KEGG: psb:Psyr_1834 hypothetical protein YP_004474763.1 PFAM: Abortive infection protein; KEGG: pmy:Pmen_2685 abortive infection protein YP_004474764.1 KEGG: pmy:Pmen_2697 hypothetical protein YP_004474765.1 KEGG: pmy:Pmen_2698 hypothetical protein YP_004474766.1 KEGG: pmy:Pmen_2699 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004474767.1 KEGG: pmy:Pmen_2700 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004474768.1 PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: pmy:Pmen_2701 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004474769.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pmy:Pmen_2702 OmpA/MotB domain-containing protein YP_004474770.1 KEGG: psp:PSPPH_1967 lipoprotein YP_004474771.1 KEGG: pmy:Pmen_2704 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004474772.1 KEGG: pmy:Pmen_2705 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1 YP_004474773.1 KEGG: pfl:PFL_1820 electron transfer flavoprotein, alpha subunit; PFAM: electron transfer flavoprotein, alpha subunit, C-terminal; electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004474774.1 KEGG: pfl:PFL_1819 electron transfer flavoprotein, beta subunit; PFAM: electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004474775.1 KEGG: pmy:Pmen_2708 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase YP_004474776.1 PFAM: protein of unknown function DUF1285; KEGG: pmy:Pmen_1642 hypothetical protein YP_004474777.1 KEGG: pmy:Pmen_1641 hypothetical protein YP_004474778.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_1638 TetR family transcriptional regulator YP_004474779.1 KEGG: psa:PST_2612 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004474780.1 KEGG: pau:PA14_25780 TatD family deoxyribonuclease; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004474781.1 PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_1635 type IV pilus assembly PilZ YP_004474782.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: psp:PSPPH_1647 DNA polymerase III subunit delta' YP_004474783.1 PFAM: Thymidylate kinase; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: ppg:PputGB1_1495 thymidylate kinase YP_004474784.1 KEGG: pmy:Pmen_1632 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755 YP_004474785.1 TIGRFAM: Aminodeoxychorismate lyase, class IV; KEGG: pmy:Pmen_1631 4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase, class IV YP_004474786.1 SMART: polyketide synthase, beta-ketoacyl synthase domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: pmy:Pmen_1630 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal YP_004474787.1 SMART: polyketide synthase, phosphopantetheine-binding; TIGRFAM: acyl carrier protein (ACP); KEGG: pmy:Pmen_1629 acyl carrier protein; HAMAP: acyl carrier protein (ACP); PFAM: phosphopantetheine-binding YP_004474788.1 SMART: polyketide synthase/Fatty acid synthase, KR; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: pfs:PFLU4705 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004474789.1 SMART: polyketide synthase, acyl transferase domain; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: pmy:Pmen_1627 [acyl-carrier-protein] S-malonyltransferase; PFAM: acyl transferase YP_004474790.1 TIGRFAM: phospholipid biosynthesis protein, PlsX-like; HAMAP: phospholipid biosynthesis protein, PlsX-like; KEGG: psa:PST_2624 glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis PlsX protein YP_004474791.1 TIGRFAM: ribosomal protein L32p; HAMAP: ribosomal protein L32p; KEGG: pmy:Pmen_1625 50S ribosomal protein L32; PFAM: ribosomal protein L32p YP_004474792.1 PFAM: protein of unknown function DUF177; KEGG: pfl:PFL_1792 hypothetical protein YP_004474793.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: pst:PSPTO_3837 maf protein; PFAM: Maf-like protein YP_004474794.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pmy:Pmen_1987 DNA helicase/exodeoxyribonuclease V, alpha subunit; SMART: ATPase, AAA+ type, core YP_004474795.1 KEGG: pmy:Pmen_1986 DNA helicase/exodeoxyribonuclease V, beta subunit; TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: DNA helicase, UvrD/REP type YP_004474796.1 KEGG: pmy:Pmen_1985 DNA helicase/exodeoxyribonuclease V, gamma subunit; TIGRFAM: exodeoxyribonuclease V, RecC subunit YP_004474797.1 KEGG: psa:PST_1763 hypothetical protein YP_004474798.1 PFAM: Ankyrin repeat; KEGG: pfl:PFL_5357 ankyrin domain-containing protein YP_004474799.1 KEGG: psa:PST_3568 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive YP_004474800.1 KEGG: pfs:PFLU5176 methyl-accepting chemotaxis protein II; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474801.1 PFAM: protein of unknown function DUF421; KEGG: psa:PST_2216 inner membrane protein YP_004474803.1 KEGG: pfo:Pfl01_3251 hypothetical protein YP_004474804.1 PFAM: Amino acid permease domain; KEGG: pfo:Pfl01_2793 amino acid permease-associated region YP_004474805.1 KEGG: bta:534896 centrosomal protein 350kDa YP_004474807.1 KEGG: pfo:Pfl01_1938 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004474808.1 SMART: histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: pmy:Pmen_1982 integration host factor subunit alpha; HAMAP: Integration host factor, alpha subunit; PFAM: histone-like bacterial DNA-binding protein YP_004474809.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: pmy:Pmen_1981 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial YP_004474810.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; KEGG: avn:Avin_20460 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004474811.1 TIGRFAM: ribosomal protein L20; HAMAP: ribosomal protein L20; KEGG: pmy:Pmen_1979 50S ribosomal protein L20; PFAM: ribosomal protein L20 YP_004474812.1 TIGRFAM: ribosomal protein L35, non-mitochondrial; HAMAP: ribosomal protein L35, non-mitochondrial; KEGG: pen:PSEEN1965 50S ribosomal protein L35; PFAM: ribosomal protein L35 YP_004474813.1 TIGRFAM: translation initiation factor 3; HAMAP: translation initiation factor 3; KEGG: pen:PSEEN1964 translation initiation factor IF-3; PFAM: translation initiation factor 3, C-terminal; translation initiation factor 3, N-terminal YP_004474814.1 TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: ppg:PputGB1_3481 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD YP_004474815.1 KEGG: pmy:Pmen_1974 hypothetical protein YP_004474816.1 KEGG: pmy:Pmen_1973 hypothetical protein YP_004474817.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: azo:azo3629 LysR family transcriptional regulator YP_004474818.1 KEGG: pmy:Pmen_0068 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004474819.1 PFAM: peptide chain release factor class I/class II; KEGG: pmy:Pmen_1309 peptidyl-tRNA hydrolase domain protein YP_004474820.1 PFAM: protein of unknown function DUF457, transmembrane; KEGG: pmy:Pmen_1308 membrane-bound metal-dependent hydrolase YP_004474821.1 KEGG: pmy:Pmen_1701 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004474822.1 PFAM: Amino acid permease domain; KEGG: psa:PST_2613 aromatic amino acid transport protein AroP1 YP_004474823.1 TIGRFAM: Maleylacetoacetate isomerase; KEGG: pmy:Pmen_1699 maleylacetoacetate isomerase; PFAM: glutathione S-transferase, N-terminal YP_004474824.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: psa:PST_0871 2-keto-4-pentenoate hydratase; 2-oxohepta-3-ene-1,7-dioic acid hydratase YP_004474825.1 PFAM: Homogentisate 1,2-dioxygenase; KEGG: pmy:Pmen_1697 homogentisate 1,2-dioxygenase YP_004474826.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: pmy:Pmen_1696 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004474827.1 KEGG: hch:HCH_01007 hypothetical protein YP_004474828.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: pmy:Pmen_1695 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004474829.1 PFAM: DSBA-like thioredoxin domain; KEGG: pmy:Pmen_1694 DsbA oxidoreductase YP_004474830.1 HAMAP: Uncharacterised protein family UPF0176; PFAM: Rhodanese-like; KEGG: pmy:Pmen_1693 hypothetical protein; SMART: Rhodanese-like YP_004474831.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: bgl:bglu_1g10950 alcohol dehydrogenase, zinc-binding domain protein; SMART: polyketide synthase, enoylreductase YP_004474832.1 PFAM: BolA protein; KEGG: pmy:Pmen_1692 transcriptional regulator BolA YP_004474833.1 PFAM: protein of unknown function DUF2059; KEGG: pmy:Pmen_1691 hypothetical protein YP_004474834.1 KEGG: pmy:Pmen_1690 hypothetical protein YP_004474835.1 PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase, class II; KEGG: pst:PSPTO_1731 fumarate hydratase, class II YP_004474836.1 PFAM: Flavodoxin-like fold; KEGG: pmy:Pmen_1688 NAD(P)H dehydrogenase (quinone) YP_004474837.1 PFAM: hypothetical protein; KEGG: avn:Avin_49900 permease YP_004474838.1 PFAM: ATPase, AFG1-like; KEGG: psa:PST_1251 ATPase YP_004474839.1 TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; KEGG: ppw:PputW619_0781 protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal YP_004474840.1 TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; KEGG: psb:Psyr_2122 intradiol ring-cleavage dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal YP_004474841.1 PFAM: glutathione S-transferase, C-terminal; glutathione S-transferase, N-terminal; KEGG: spe:Spro_1679 glutathione S-transferase domain-containing protein YP_004474842.1 PFAM: Helix-turn-helix, HxlR type; KEGG: bcm:Bcenmc03_4119 HxlR family transcriptional regulator YP_004474843.1 KEGG: min:Minf_1656 TPR repeat protein, SEL1 subfamily YP_004474844.1 KEGG: dsh:Dshi_3903 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004474845.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: gvi:gll2002 hydrolase YP_004474846.1 KEGG: pap:PSPA7_0230 transcriptional regulator PcaQ; TIGRFAM: Pca transcription factor PcaQ; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004474847.1 PFAM: Starch synthase, catalytic domain; glycosyl transferase, group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type; HAMAP: glycogen/starch synthases, ADP-glucose type; KEGG: pmy:Pmen_2277 glycogen synthase YP_004474848.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: psa:PST_2138 alpha-amylase; PFAM: glycosyl hydrolase, family 13, catalytic domain; glycoside hydrolase, family 13, N-terminal YP_004474849.1 TIGRFAM: glycoside hydrolase, family 77; KEGG: psa:PST_2139 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_004474850.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose synthase; KEGG: psa:PST_2140 maltooligosyl trehalose synthase; PFAM: glycosyl hydrolase, family 13, catalytic domain YP_004474851.1 KEGG: psp:PSPPH_2244 hypothetical protein YP_004474852.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: glycogen debranching enzyme; KEGG: pfl:PFL_2882 glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13, N-terminal; glycosyl hydrolase, family 13, catalytic domain YP_004474853.1 KEGG: pfo:Pfl01_2543 hypothetical protein YP_004474854.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: pfo:Pfl01_2542 LmbE-like protein YP_004474855.1 PFAM: methyltransferase type 12; KEGG: pst:PSPTO_3133 methyltransferase YP_004474856.1 PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl01_2540 glycosyl transferase YP_004474857.1 KEGG: pap:PSPA7_3147 hypothetical protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004474858.1 PFAM: protein of unknown function DUF72; KEGG: psa:PST_2148 hypothetical protein YP_004474859.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: psa:PST_2149 endonuclease/exonuclease/phosphatase YP_004474860.1 KEGG: pau:PA14_36690 cardiolipin synthase 2; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004474861.1 KEGG: psp:PSPPH_3196 hypothetical protein YP_004474862.1 KEGG: pfl:PFL_2681 hypothetical protein YP_004474863.1 KEGG: pmy:Pmen_0130 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004474864.1 PFAM: Negative transcriptional regulator; KEGG: pmy:Pmen_0131 FMN-binding negative transcriptional regulator YP_004474865.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_0132 GCN5-related N-acetyltransferase YP_004474866.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pae:PA5433 hypothetical protein YP_004474867.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pag:PLES_21481 hypothetical protein YP_004474868.1 KEGG: psa:PST_0880 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474869.1 PFAM: protein of unknown function DUF1615; KEGG: pfo:Pfl01_3749 hypothetical protein YP_004474870.1 KEGG: pfs:PFLU2951 hypothetical protein YP_004474871.1 KEGG: avn:Avin_27990 glycogen branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; glycosyl hydrolase, family 13, catalytic domain; glycoside hydrolase, family 13, N-terminal; TIGRFAM: 1,4-alpha-glucan-branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004474872.1 KEGG: pag:PLES_31741 trehalose synthase; TIGRFAM: Trehalose synthase/probable maltokinase, C-terminal; PFAM: Aminoglycoside phosphotransferase YP_004474873.1 KEGG: psa:PST_2154 alpha-amylase; PFAM: glycosyl hydrolase, family 13, catalytic domain; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004474874.1 KEGG: pmy:Pmen_3217 ATP-dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit YP_004474875.1 SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: pfs:PFLU2912 hypothetical protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type YP_004474876.1 KEGG: pag:PLES_31771 hypothetical protein YP_004474877.1 PFAM: MgtC/SapB transporter; KEGG: pfl:PFL_2871 Mg2+ transporter YP_004474878.1 KEGG: avn:Avin_00290 hypothetical protein YP_004474879.1 KEGG: pfo:Pfl01_0028 hypothetical protein YP_004474880.1 KEGG: pfl:PFL_3995 hypothetical protein YP_004474881.1 KEGG: pae:PA2147 hydroperoxidase II; PFAM: Catalase-related subgroup; Catalase-related immune responsive; ThiJ/PfpI YP_004474882.1 KEGG: pmy:Pmen_2288 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35 YP_004474883.1 PFAM: protein of unknown function DUF2513; KEGG: pap:PSPA7_3165 hypothetical protein YP_004474884.1 KEGG: pmy:Pmen_2297 Rho termination factor domain-containing protein YP_004474885.1 KEGG: psa:PST_1724 hypothetical protein YP_004474886.1 KEGG: lip:LI0743 flagellar basal body L-ring protein YP_004474887.1 KEGG: pmy:Pmen_2629 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004474888.1 KEGG: pmy:Pmen_2630 OsmC family protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein YP_004474889.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppg:PputGB1_4416 antibiotic biosynthesis monooxygenase YP_004474890.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ppf:Pput_3738 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004474891.1 KEGG: pmy:Pmen_2638 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004474892.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; KEGG: psa:PST_4174 TonB-dependent siderophore receptor; SMART: Secretin/TonB, short N-terminal YP_004474893.1 PFAM: FecR protein; KEGG: psa:PST_4175 transmembrane sensor YP_004474894.1 KEGG: psa:PST_4176 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004474895.1 SMART: Toprim domain; TIGRFAM: RecR protein; KEGG: pmy:Pmen_2645 recombination protein RecR; HAMAP: RecR protein; PFAM: Toprim domain; Zinc finger C4-type, RecR YP_004474896.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: pmy:Pmen_2646 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004474897.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: pmy:Pmen_2647 DNA polymerase III subunits gamma and tau; SMART: ATPase, AAA+ type, core YP_004474898.1 KEGG: pmy:Pmen_2648 hypothetical protein YP_004474899.1 KEGG: pmy:Pmen_2649 hypothetical protein YP_004474900.1 PFAM: protein of unknown function DUF1287; KEGG: pmy:Pmen_2518 hypothetical protein YP_004474901.1 KEGG: pag:PLES_37571 hypothetical protein YP_004474902.1 HAMAP: Erythronate-4-phosphate dehydrogenase; KEGG: pfs:PFLU1546 erythronate-4-phosphate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004474903.1 KEGG: pmy:Pmen_1907 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004474904.1 KEGG: pag:PLES_37651 sulfur transfer protein SirA; HAMAP: Sulphurtransferase TusA; PFAM: SirA-like YP_004474905.1 HAMAP: ribosomal RNA large subunit methyltransferase M; KEGG: pfo:Pfl01_3889 RNA 2'-O-ribose methyltransferase YP_004474906.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: pau:PA14_44290 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004474908.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: pmy:Pmen_1902 methyl-accepting chemotaxis sensory transducer; SMART: Chemotaxis methyl-accepting receptor, signalling; PAC motif YP_004474909.1 manually curated; KEGG: chu:CHU_0189 hypothetical protein YP_004474910.1 manually curated; KEGG: gym:GYMC10_2735 hypothetical protein YP_004474911.1 KEGG: pau:PA14_32370 DNA damage-inducible gene; manually curated; PFAM: DinB YP_004474912.1 KEGG: pfo:Pfl01_3547 hypothetical protein YP_004474913.1 KEGG: pap:PSPA7_3915 hypothetical protein YP_004474914.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: xca:xccb100_0352 hypothetical protein YP_004474915.1 KEGG: ppg:PputGB1_3277 hypothetical protein YP_004474916.1 KEGG: det:DET0408 cation channel family protein YP_004474917.1 manually curated; KEGG: swd:Swoo_0976 5-carboxymethyl-2-hydroxymuconate isomerase YP_004474918.1 KEGG: gbr:Gbro_4372 hypothetical protein YP_004474919.1 KEGG: ppu:PP_4249 hypothetical protein YP_004474920.1 TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: pmy:Pmen_2599 cytochrome c oxidase, cbb3-type, subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004474921.1 KEGG: pmy:Pmen_2605 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO YP_004474922.1 KEGG: pmy:Pmen_2601 Cbb3-type cytochrome oxidase component YP_004474923.1 KEGG: pmy:Pmen_2602 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I YP_004474924.1 TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: pmy:Pmen_2604 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004474925.1 KEGG: pmy:Pmen_2605 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO YP_004474926.1 KEGG: pmy:Pmen_2606 Cbb3-type cytochrome oxidase component YP_004474927.1 KEGG: psa:PST_1837 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I YP_004474928.1 TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: pmy:Pmen_2608 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004474929.1 PFAM: FixH; KEGG: pmy:Pmen_2609 hypothetical protein YP_004474930.1 PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; manually curated; KEGG: pmy:Pmen_2610 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter YP_004474931.1 KEGG: ppw:PputW619_3580 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type YP_004474932.1 KEGG: pmy:Pmen_2612 hypothetical protein YP_004474933.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: pmy:Pmen_2613 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004474934.1 KEGG: pmy:Pmen_2614 hypothetical protein YP_004474935.1 KEGG: pmy:Pmen_2615 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004474936.1 TIGRFAM: adenine phosphoribosyl transferase; HAMAP: adenine phosphoribosyl transferase; KEGG: pmy:Pmen_2616 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004474937.1 KEGG: pmy:Pmen_1622 signal peptide peptidase SppA, 36K type; TIGRFAM: peptidase S49, SppA; PFAM: peptidase S49 YP_004474938.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: pmy:Pmen_1621 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase YP_004474939.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: pmy:Pmen_1620 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4 YP_004474940.1 TIGRFAM: ribonuclease E/G; PFAM: RNA-binding protein AU-1/ribonuclease E/G; ribosomal protein S1, RNA-binding domain; KEGG: pmy:Pmen_1619 RNAse E; SMART: RNA-binding domain, S1 YP_004474941.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: pmy:Pmen_1618 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal YP_004474942.1 SMART: protein-tyrosine phosphatase, low molecular weight; manually curated; KEGG: pmy:Pmen_1617 protein tyrosine phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight YP_004474943.1 PFAM: acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: pmy:Pmen_1616 3-deoxy-manno-octulosonate cytidylyltransferase YP_004474944.1 KEGG: ppw:PputW619_1512 hypothetical protein; HAMAP: Uncharacterised protein family UPF0434/Trm112; PFAM: Uncharacterised protein family UPF0434/Trm112 YP_004474945.1 PFAM: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: psp:PSPPH_1628 tetraacyldisaccharide 4'-kinase YP_004474946.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pmy:Pmen_1613 biopolymer transport protein ExbD/TolR YP_004474947.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pmy:Pmen_1612 MotA/TolQ/ExbB proton channel YP_004474948.1 TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase-like; KEGG: pmy:Pmen_1611 DNA internalization-related competence protein ComEC/Rec2; SMART: beta-lactamase-like YP_004474949.1 KEGG: psb:Psyr_1906 hypothetical protein; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease YP_004474950.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: pmy:Pmen_1608 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like YP_004474951.1 KEGG: psp:PSPPH_1859 lipoprotein releasing system transmembrane protein LolC; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease YP_004474952.1 PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_1606 type IV pilus assembly PilZ YP_004474953.1 KEGG: pmy:Pmen_1605 hypothetical protein YP_004474954.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: psa:PST_2646 phosphodiesterase YP_004474955.1 PFAM: ATPase, AAA-type, core; KEGG: pfl:PFL_2517 hypothetical protein YP_004474956.1 HAMAP: Soluble pyridine nucleotide transhydrogenase; KEGG: pmy:Pmen_1603 soluble pyridine nucleotide transhydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004474957.1 PFAM: protein of unknown function DUF539; KEGG: pmy:Pmen_1602 hypothetical protein YP_004474958.1 PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: pmy:Pmen_1601 ApbE family lipoprotein YP_004474959.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; ferredoxin; Oxidoreductase, FAD-binding domain; TIGRFAM: NADH-quinone reductase, Na(+)-translocating, F subunit; HAMAP: NADH-quinone reductase, Na(+)-translocating, F subunit; KEGG: pmy:Pmen_1600 Na(+)-translocating NADH-quinone reductase subunit F YP_004474960.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; HAMAP: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; KEGG: psa:PST_2651 Na(+)-translocating NADH-quinone reductase subunit E; PFAM: electron transport complex, Rnf/Nqr YP_004474961.1 KEGG: pmy:Pmen_1598 Na(+)-translocating NADH-quinone reductase subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; PFAM: electron transport complex, Rnf/Nqr YP_004474962.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; PFAM: FMN-binding; KEGG: psa:PST_2653 Na(+)-translocating NADH-quinone reductase subunit C; SMART: FMN-binding YP_004474963.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; HAMAP: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; KEGG: psa:PST_2654 Na(+)-translocating NADH-quinone reductase subunit B; PFAM: NADH-quinone reductase NQR2/RnfD YP_004474964.1 KEGG: pmy:Pmen_1595 Na(+)-translocating NADH-quinone reductase subunit A; TIGRFAM: NADH-quinone reductase, Na(+)-translocating, subunit A; PFAM: NADH-quinone reductase, Na(+)-translocating, subunit A YP_004474965.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: pmy:Pmen_1594 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004474966.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription-repair-coupling factor domain; transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmy:Pmen_1593 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004474967.1 PFAM: glycoside hydrolase, family 3, N-terminal; KEGG: ppw:PputW619_1662 beta-hexosaminidase YP_004474968.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_1588 TetR family transcriptional regulator YP_004474969.1 TIGRFAM: peptidase S24, LexA repressor; HAMAP: peptidase S24, LexA repressor; KEGG: pmy:Pmen_1587 LexA repressor; PFAM: LexA, DNA-binding domain; peptidase S24/S26A/S26B, conserved region YP_004474970.1 KEGG: pmy:Pmen_1586 SOS cell division inhibitor SulA YP_004474971.1 KEGG: pmy:Pmen_1585 hypothetical protein YP_004474972.1 KEGG: psa:PST_1730 hypothetical protein YP_004474973.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: pmy:Pmen_1583 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; DNA topoisomerase I, zinc ribbon-like, bacterial-type YP_004474974.1 PFAM: protein of unknown function DUF1653; KEGG: pfo:Pfl01_3877 TonB box-like YP_004474975.1 PFAM: Thiolase, N-terminal; Thiolase, C-terminal; TIGRFAM: acetyl-CoA C-acyltransferase FadA; Thiolase; HAMAP: acetyl-CoA C-acyltransferase FadA; KEGG: pmy:Pmen_1581 3-ketoacyl-CoA thiolase YP_004474976.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; TIGRFAM: Fatty oxidation complex, alpha subunit FadB; HAMAP: Fatty oxidation complex, alpha subunit FadB; KEGG: pmy:Pmen_1580 multifunctional fatty acid oxidation complex subunit alpha YP_004474977.1 KEGG: pmy:Pmen_1579 hypothetical protein YP_004474978.1 KEGG: pag:PLES_20461 hypothetical protein YP_004474979.1 PFAM: UspA; KEGG: pap:PSPA7_2142 hypothetical protein YP_004474980.1 KEGG: pfs:PFLU1550 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004474981.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: pmy:Pmen_1575 lytic transglycosylase, catalytic YP_004474982.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; KEGG: pfl:PFL_4202 MOSC domain-containing protein YP_004474983.1 KEGG: pmy:Pmen_1572 CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver domain; SMART: CheW-like protein; Signal transduction response regulator, receiver domain YP_004474984.1 SMART: Diacylglycerol kinase, catalytic domain; TIGRFAM: Lipid kinase YegS; Diacylglycerol/lipid kinase; KEGG: nve:NEMVE_v1g225007 hypothetical protein; HAMAP: Probable lipid kinase YegS; PFAM: Diacylglycerol kinase, catalytic domain YP_004474985.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; KEGG: pmy:Pmen_1745 molybdopterin molybdochelatase; SMART: Molybdopterin binding YP_004474986.1 TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: pap:PSPA7_2129 molybdopterin biosynthetic protein B2; SMART: Molybdopterin binding YP_004474987.1 KEGG: pmy:Pmen_1743 molybdopterin-guanine dinucleotide biosynthesis protein MobA; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A YP_004474988.1 PFAM: protein of unknown function DUF903; KEGG: pfo:Pfl01_3963 hypothetical protein YP_004474989.1 KEGG: pfs:PFLU2250 hypothetical protein YP_004474990.1 KEGG: pen:PSEEN1347 C4-dicarboxylate transporter DctA; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter YP_004474991.1 KEGG: pag:PLES_41411 two-component sensor PhoQ; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004474992.1 KEGG: pap:PSPA7_4200 two-component response regulator PhoP; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004474993.1 KEGG: pmy:Pmen_2977 hypothetical protein YP_004474994.1 KEGG: pmy:Pmen_2979 periplasmic nitrate reductase NapE; TIGRFAM: Nitrate reductas, NapE, periplasmic; PFAM: Nitrate/trimethylamine N-oxide reductase NapE/TorE YP_004474995.1 PFAM: Chaperone NapD, nitrate reductase assembly; KEGG: pmy:Pmen_2980 NapD family protein YP_004474996.1 KEGG: pmy:Pmen_2981 nitrate reductase catalytic subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; TIGRFAM: Nitrate reductase, large subunit, periplasmic; Twin-arginine translocation pathway, signal sequence; HAMAP: Nitrate reductase, large subunit, periplasmic; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004474997.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: pmy:Pmen_2982 periplasmic nitrate reductase subunit NapB YP_004474998.1 KEGG: pmy:Pmen_2983 periplasmic nitrate reductase subunit NapC; TIGRFAM: Periplasmic nitrate reductase c-type cytochrome, NapC/NirT; PFAM: NapC/NirT cytochrome c, N-terminal YP_004474999.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: pmy:Pmen_3148 4'-phosphopantetheinyl transferase YP_004475000.1 HAMAP: M18 family aminopeptidase 2, KEGG: pmy:Pmen_1231 aminopeptidase 2; PFAM: peptidase M18 YP_004475001.1 TIGRFAM: phosphoheptose isomerase, subgroup; HAMAP: phosphoheptose isomerase; KEGG: pmy:Pmen_1230 phosphoheptose isomerase; PFAM: Sugar isomerase (SIS) YP_004475002.1 PFAM: Mechanosensitive ion channel MscS; KEGG: pfs:PFLU4375 transporter-like membrane protein YP_004475003.1 PFAM: LemA; KEGG: sde:Sde_3150 divalent cation transporter YP_004475004.1 PFAM: peptidase M48; KEGG: cja:CJA_0922 Zn-dependent protease with chaperone function YP_004475005.1 PFAM: CAP domain; KEGG: pag:PLES_41801 hypothetical protein YP_004475006.1 PFAM: glucosylglycerol-phospate 3-phosphatase; manually curated; TIGRFAM: glucosylglycerol-phospate 3-phosphatase; KEGG: amr:AM1_1691 glucosylglycerol 3-phosphatase YP_004475007.1 KEGG: ppw:PputW619_4358 hypothetical protein YP_004475009.1 KEGG: ppf:Pput_2814 hypothetical protein YP_004475010.1 KEGG: hch:HCH_04153 major facilitator superfamily permease YP_004475011.1 PFAM: protein of unknown function DUF2167, membrane; KEGG: pmy:Pmen_1786 hypothetical protein YP_004475012.1 KEGG: ppg:PputGB1_1285 hypothetical protein YP_004475013.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xcb:XC_3052 transcriptional regulator YP_004475014.1 PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: psa:PST_1598 peptidyl-prolyl cis-trans isomerase C YP_004475015.1 PFAM: Uncharacterised conserved protein UCP012641; KEGG: psb:Psyr_1820 hypothetical protein YP_004475016.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ppg:PputGB1_3882 glutathione-dependent formaldehyde-activating GFA YP_004475017.1 PFAM: Inositol monophosphatase; KEGG: psa:PST_1593 inositol-1-monophosphatase YP_004475018.1 PFAM: protein of unknown function DUF81; KEGG: pmy:Pmen_3174 hypothetical protein YP_004475019.1 TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: pap:PSPA7_4245 deoxyguanosinetriphosphate triphosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain YP_004475020.1 KEGG: psa:PST_1587 hypothetical protein YP_004475021.1 KEGG: bcj:BCAS0188 LysR family regulatory protein; manually curated; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding YP_004475022.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dac:Daci_3976 lysine exporter protein LysE/YggA YP_004475023.1 KEGG: psa:PST_1591 hypothetical protein YP_004475024.1 KEGG: pap:PSPA7_6344 hypothetical protein; PFAM: beta-lactamase-related YP_004475025.1 KEGG: psa:PST_1450 hypothetical protein YP_004475026.1 TIGRFAM: protein of unknown function DUF28; HAMAP: protein of unknown function DUF28; KEGG: pmy:Pmen_3178 hypothetical protein; PFAM: protein of unknown function DUF28 YP_004475027.1 KEGG: fjo:Fjoh_1994 short-chain dehydrogenase/reductase SDR YP_004475028.1 PFAM: NUDIX hydrolase domain; KEGG: pmy:Pmen_3179 NUDIX hydrolase YP_004475029.1 KEGG: pau:PA14_47010 hypothetical protein YP_004475030.1 PFAM: protein of unknown function DUF2025; KEGG: pmy:Pmen_3180 hypothetical protein YP_004475031.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_3184 GCN5-related N-acetyltransferase YP_004475032.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_3185 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004475033.1 KEGG: pag:PLES_18331 acetate permease; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004475034.1 PFAM: protein of unknown function DUF485; KEGG: pag:PLES_18321 hypothetical protein YP_004475035.1 KEGG: pmy:Pmen_3186 hypothetical protein YP_004475036.1 KEGG: pmy:Pmen_4577 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_004475037.1 PFAM: Amidase; KEGG: pmy:Pmen_1657 amidase YP_004475038.1 PFAM: Branched-chain amino acid transport, permease; KEGG: vpa:VPA1003 putataive branched-chain amino acid transport protein AzlC YP_004475039.1 PFAM: Branched-chain amino acid transport, AzlD; KEGG: vex:VEA_000052 transmembrane protein YP_004475040.1 KEGG: ppg:PputGB1_2744 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SMART: Secretin/TonB, short N-terminal YP_004475041.1 PFAM: FecR protein; KEGG: atu:Atu5310 transmembrane sensor YP_004475042.1 KEGG: rpe:RPE_2646 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004475043.1 PFAM: glutathione S-transferase, N-terminal; KEGG: pst:PSPTO_4777 glutathione S-transferase YP_004475044.1 KEGG: pmy:Pmen_3187 GntR family transcriptional regulator YP_004475045.1 KEGG: psp:PSPPH_1467 hypothetical protein YP_004475046.1 PFAM: Sulfatase; KEGG: pae:PA1115 hypothetical protein YP_004475047.1 KEGG: pmy:Pmen_3190 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004475048.1 KEGG: pmy:Pmen_2145 hypothetical protein YP_004475049.1 PFAM: peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: pae:PA1242 hypothetical protein YP_004475050.1 KEGG: psa:PST_2681 hypothetical protein YP_004475051.1 KEGG: pmy:Pmen_1306 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004475052.1 TIGRFAM: RarD protein; KEGG: pmy:Pmen_1302 transporter DMT superfamily protein YP_004475053.1 KEGG: pmy:Pmen_1297 hypothetical protein YP_004475054.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_1544 LysR family transcriptional regulator YP_004475055.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_1295 3-oxoadipate enol-lactonase YP_004475056.1 KEGG: pmy:Pmen_1294 peptidyl-prolyl cis-trans isomerase, cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004475057.1 PFAM: ABC transporter-like; KEGG: psa:PST_4144 ATP-binding/permease fusion ABC transporter; SMART: ATPase, AAA+ type, core YP_004475058.1 KEGG: pap:PSPA7_1897 hypothetical protein YP_004475059.1 PFAM: protein of unknown function DUF482; KEGG: pmy:Pmen_1249 hypothetical protein YP_004475060.1 PFAM: phosphate-selective porin O/P; KEGG: pap:PSPA7_1841 outer membrane porin OprO precursor YP_004475061.1 KEGG: pmy:Pmen_1545 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004475062.1 KEGG: pwa:Pecwa_3205 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004475063.1 PFAM: Helix-turn-helix, HxlR type; KEGG: pwa:Pecwa_3206 HxlR family transcriptional regulator YP_004475064.1 SMART: polyketide synthase, enoylreductase; TIGRFAM: Quinone oxidoreductase , PIG3; KEGG: pfs:PFLU2033 dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like YP_004475065.1 SMART: peptidase S41; PDZ/DHR/GLGF; TIGRFAM: peptidase S41A, C-terminal peptidase; KEGG: pmy:Pmen_1321 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF YP_004475066.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; KEGG: pmy:Pmen_1320 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004475067.1 KEGG: pmy:Pmen_1807 hypothetical protein YP_004475068.1 KEGG: pmy:Pmen_0217 hypothetical protein YP_004475069.1 TIGRFAM: Flagellar hook-associated protein 3; KEGG: pmy:Pmen_0216 flagellar hook-associated protein FlgL YP_004475070.1 KEGG: pmy:Pmen_0215 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal YP_004475071.1 PFAM: Lytic transglycosylase-like, catalytic; Flagellar protein FlgJ, N-terminal; KEGG: pmy:Pmen_0214 lytic transglycosylase, catalytic YP_004475072.1 KEGG: pmy:Pmen_0213 flagellar basal body P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004475073.1 KEGG: pmy:Pmen_0212 flagellar basal body L-ring protein; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004475074.1 KEGG: pmy:Pmen_0211 flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004475075.1 KEGG: pmy:Pmen_0210 flagellar basal-body rod protein FlgF; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal YP_004475076.1 KEGG: pmy:Pmen_0209 flagellar basal body FlaE domain-containing protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal YP_004475077.1 PFAM: Flagellar hook capping protein; KEGG: pmy:Pmen_0208 flagellar basal body rod modification protein YP_004475078.1 KEGG: pmy:Pmen_0207 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal YP_004475079.1 KEGG: pmy:Pmen_0206 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004475080.1 TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: pmy:Pmen_0205 SAF domain-containing protein; SMART: SAF domain YP_004475081.1 PFAM: Flagellin, D0/D1 domain; KEGG: pmy:Pmen_0196 flagellin domain-containing protein YP_004475082.1 KEGG: pmy:Pmen_0195 CadC family transcriptional regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal YP_004475083.1 KEGG: pmy:Pmen_0194 hypothetical protein YP_004475084.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pmy:Pmen_0193 OmpA/MotB domain-containing protein YP_004475085.1 KEGG: pmy:Pmen_0192 flagellar motor protein MotA; TIGRFAM: Flagellar motor stator, MotA; PFAM: MotA/TolQ/ExbB proton channel YP_004475086.1 KEGG: pmy:Pmen_0191 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2 YP_004475087.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: pmy:Pmen_0190 hypothetical protein YP_004475088.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: pmy:Pmen_0189 flagellar hook-length control protein YP_004475089.1 KEGG: pmy:Pmen_0188 hypothetical protein YP_004475090.1 KEGG: pmy:Pmen_0187 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004475091.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; KEGG: pmy:Pmen_0186 flagellar hook-associated 2 domain-containing protein YP_004475092.1 PFAM: FlgN-like domain; KEGG: pmy:Pmen_4411 hypothetical protein YP_004475093.1 KEGG: pmy:Pmen_4412 anti-sigma-28 factor, FlgM family protein; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM YP_004475094.1 TIGRFAM: Flagellar export FliJ; KEGG: pmy:Pmen_4413 flagellar export protein FliJ YP_004475095.1 TIGRFAM: ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; KEGG: pmy:Pmen_4414 FliI/YscN family ATPase; SMART: ATPase, AAA+ type, core YP_004475096.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: pmy:Pmen_4415 flagellar assembly protein H YP_004475097.1 PFAM: Flagellar motor switch protein FliG, C-terminal; KEGG: pmy:Pmen_4416 flagellar motor switch protein FliG YP_004475098.1 KEGG: pmy:Pmen_4417 flagellar MS-ring protein; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal YP_004475099.1 KEGG: pmy:Pmen_4418 flagellar hook-basal body complex subunit FliE; HAMAP: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004475100.1 KEGG: pmy:Pmen_4419 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004475101.1 PFAM: Surface presentation of antigen (SpoA); KEGG: pmy:Pmen_4420 surface presentation of antigens (SpoA) protein YP_004475102.1 KEGG: pmy:Pmen_4421 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004475103.1 KEGG: pmy:Pmen_4422 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004475104.1 PFAM: Bacterial export protein FliQ, family 3; KEGG: pmy:Pmen_4423 export protein FliQ YP_004475105.1 KEGG: pmy:Pmen_4424 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004475106.1 PFAM: Type III secretion exporter; KEGG: pmy:Pmen_4425 flagellar biosynthesis protein FlhB YP_004475107.1 KEGG: pmy:Pmen_4426 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004475108.1 KEGG: pmy:Pmen_4427 hypothetical protein YP_004475109.1 KEGG: pmy:Pmen_1318 hypothetical protein YP_004475110.1 KEGG: pmy:Pmen_1317 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004475111.1 KEGG: psp:PSPPH_2905 transcriptional regulatory protein NfxB; manually curated; PFAM: HTH transcriptional regulator, LacI YP_004475112.1 KEGG: pst:PSPTO_2593 multidrug resistance protein, AcrA/AcrE family; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004475113.1 KEGG: pfo:Pfl01_2757 hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004475114.1 KEGG: bch:Bcen2424_6319 (acyl-carrier-protein) phosphodiesterase; HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004475115.1 KEGG: psa:PST_1889 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004475116.1 KEGG: pfl:PFL_3819 EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain YP_004475117.1 KEGG: pfl:PFL_3820 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004475118.1 KEGG: pfs:PFLU5893 sn-glycerol-3-phosphate transporter; TIGRFAM: glycerol-3-phosphate transporter; GlpT transporter; PFAM: Major facilitator superfamily MFS-1 YP_004475119.1 KEGG: ppw:PputW619_1563 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004475120.1 KEGG: pfl:PFL_2078 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004475121.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: ppw:PputW619_1561 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase YP_004475122.1 PFAM: Colicin V production, CvpA; KEGG: pfl:PFL_2076 CvpA family protein YP_004475123.1 PFAM: Sporulation-related domain; KEGG: pmy:Pmen_2713 sporulation domain-containing protein YP_004475124.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: pmy:Pmen_2714 FolC bifunctional protein; PFAM: Mur ligase, central YP_004475125.1 PFAM: Carboxyl transferase; TIGRFAM: acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: pmy:Pmen_2715 acetyl-CoA carboxylase subunit beta YP_004475126.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pmy:Pmen_2716 N-(5'-phosphoribosyl)anthranilate isomerase YP_004475127.1 TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: psa:PST_1778 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_004475128.1 TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: pmy:Pmen_2718 Tfp pilus assembly protein FimV-like protein YP_004475129.1 PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; KEGG: pfo:Pfl01_1894 aspartate-semialdehyde dehydrogenase; SMART: Semialdehyde dehydrogenase, NAD-binding YP_004475130.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: aspartate-semialdehyde dehydrogenase, proteobacteria; KEGG: pmy:Pmen_2720 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding YP_004475131.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: pmy:Pmen_2721 3-isopropylmalate dehydrogenase YP_004475132.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; HAMAP: 3-isopropylmalate dehydratase, small subunit; KEGG: pmy:Pmen_2722 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004475133.1 PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit; KEGG: pmy:Pmen_2723 isopropylmalate isomerase large subunit YP_004475134.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_2724 LysR family transcriptional regulator YP_004475135.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-3; KEGG: pfs:PFLU4198 sensory box GGDEF/EAL domain-containing protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS YP_004475136.1 PFAM: Heat shock protein Hsp20; KEGG: nve:NEMVE_v1g156025 hypothetical protein YP_004475137.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nve:NEMVE_v1g156023 hypothetical protein; SMART: polyketide synthase/Fatty acid synthase, KR YP_004475138.1 PFAM: tRNA-dihydrouridine synthase; KEGG: pmy:Pmen_2727 dihydrouridine synthase, DuS YP_004475139.1 KEGG: pmy:Pmen_2728 hypothetical protein YP_004475140.1 PFAM: Thioesterase superfamily; KEGG: pmy:Pmen_2729 thioesterase superfamily protein YP_004475141.1 TIGRFAM: glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: pen:PSEEN1639 glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004475142.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: psb:Psyr_3110 nucleoside 2-deoxyribosyltransferase YP_004475143.1 SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: pmy:Pmen_2737 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein YP_004475144.1 KEGG: pmy:Pmen_2738 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/classII YP_004475145.1 KEGG: pmy:Pmen_2827 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004475146.1 KEGG: pae:PA1098 two-component sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004475147.1 KEGG: pmy:Pmen_2829 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Flagellar regulatory FleQ; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004475148.1 KEGG: psa:PST_2545 signal transduction histidine kinase YP_004475149.1 KEGG: pmy:Pmen_2831 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004475150.1 KEGG: pmy:Pmen_2832 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004475151.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; Flagellin hook, IN motif; KEGG: pap:PSPA7_4277 flagellar cap protein FliD YP_004475152.1 PFAM: Flagellar protein FlaG protein; KEGG: pap:PSPA7_4278 hypothetical protein YP_004475153.1 PFAM: Flagellin, D0/D1 domain; KEGG: pap:PSPA7_4279 A-type flagellin YP_004475154.1 KEGG: pag:PLES_42341 flagellar hook-associated protein FlgL; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, D0/D1 domain YP_004475155.1 KEGG: pmy:Pmen_2841 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004475156.1 TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; KEGG: pmy:Pmen_2842 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme domain, subfamily 2 YP_004475157.1 KEGG: pmy:Pmen_2843 flagellar basal body P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004475158.1 KEGG: psa:PST_1394 flagellar basal body L-ring protein; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004475159.1 KEGG: pmy:Pmen_2845 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004475160.1 KEGG: pmy:Pmen_2846 flagellar basal body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal YP_004475161.1 KEGG: pmy:Pmen_2847 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal YP_004475162.1 PFAM: Flagellar hook capping protein; KEGG: pmy:Pmen_2848 flagellar basal body rod modification protein YP_004475163.1 KEGG: pmy:Pmen_2849 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004475164.1 KEGG: ppw:PputW619_3732 flagellar basal body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004475165.1 PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: pmy:Pmen_2851 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_004475166.1 KEGG: pmy:Pmen_2852 CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver domain; SMART: CheW-like protein; Signal transduction response regulator, receiver domain YP_004475167.1 TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: pmy:Pmen_2853 flagellar basal body P-ring biosynthesis protein FlgA; SMART: SAF domain YP_004475168.1 KEGG: pmy:Pmen_2854 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM YP_004475169.1 PFAM: FlgN-like domain; KEGG: pmy:Pmen_2855 FlgN family protein YP_004475170.1 PFAM: Type IV pilus assembly PilZ; KEGG: pap:PSPA7_1777 type IV pilus assembly protein PilZ YP_004475171.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_2857 major facilitator transporter YP_004475172.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: pmy:Pmen_2876 indolepyruvate ferredoxin oxidoreductase YP_004475173.1 KEGG: psa:PST_0865 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004475174.1 KEGG: dan:Dana_GF18050 GF18050 gene product from transcript GF18050-RA YP_004475176.1 KEGG: psp:PSPPH_3503 hypothetical protein YP_004475177.1 KEGG: pap:PSPA7_1756 phosphonate metabolism protein/1,5-bisphosphokinase PhnN; TIGRFAM: phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: Guanylate kinase/L-type calcium channel YP_004475178.1 KEGG: pmy:Pmen_2891 Arc domain-containing protein YP_004475179.1 TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter MgtE intracellular domain; Cystathionine beta-synthase, core; MgtE magnesium transporter integral membrane; KEGG: pmy:Pmen_2899 magnesium transporter; SMART: Magnesium transporter MgtE intracellular domain; Cystathionine beta-synthase, core YP_004475180.1 KEGG: pmy:Pmen_2900 hypothetical protein YP_004475181.1 TIGRFAM: Carbon storage regulator; HAMAP: Carbon storage regulator; KEGG: pmy:Pmen_2901 carbon storage regulator; PFAM: Carbon storage regulator YP_004475182.1 KEGG: pmy:Pmen_2902 aspartate kinase; TIGRFAM: aspartate kinase domain; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_004475183.1 TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; phosphoesterase, DHHA1; KEGG: pmy:Pmen_2903 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD YP_004475184.1 KEGG: pmy:Pmen_2904 L-threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004475185.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; TIGRFAM: Succinylglutamate desuccinylase; HAMAP: Succinylglutamate desuccinylase; KEGG: pmy:Pmen_2905 succinylglutamate desuccinylase YP_004475186.1 KEGG: pfo:Pfl01_4280 hypothetical protein YP_004475187.1 PFAM: Succinylarginine dihydrolase; TIGRFAM: Succinylarginine dihydrolase; HAMAP: Succinylarginine dihydrolase; KEGG: pst:PSPTO_1836 succinylarginine dihydrolase YP_004475188.1 PFAM: Aldehyde dehydrogenase domain; TIGRFAM: Succinylglutamic semialdehyde dehydrogenase; HAMAP: Succinylglutamic semialdehyde dehydrogenase; KEGG: pau:PA14_52670 succinylglutamic semialdehyde dehydrogenase YP_004475189.1 TIGRFAM: arginine N-succinyltransferase AstA; arginine N-succinyltransferase Ast/AOST; KEGG: pmy:Pmen_2909 arginine succinyltransferase; PFAM: arginine N-succinyltransferase Ast/AOST YP_004475190.1 TIGRFAM: arginine/ornithine succinyltransferase, alpha subunit; arginine N-succinyltransferase Ast/AOST; KEGG: pmy:Pmen_2910 arginine succinyltransferase; PFAM: arginine N-succinyltransferase Ast/AOST YP_004475191.1 PFAM: Aminotransferase class-III; TIGRFAM: Succinylornithine transaminase; acetylornithine/succinylornithine aminotransferase; HAMAP: acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: pfl:PFL_4515 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase YP_004475192.1 KEGG: psp:PSPPH_3894 hypothetical protein YP_004475193.1 KEGG: reu:Reut_B5128 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase, NPD YP_004475194.1 PFAM: Drug/metabolite transporter; KEGG: pag:PLES_18451 permease YP_004475195.1 PFAM: glycoside hydrolase 15-related; KEGG: pfo:Pfl01_1839 glycoside hydrolase 15-like protein YP_004475196.1 KEGG: pva:Pvag_pPag30134 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004475197.1 KEGG: ppg:PputGB1_3003 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004475198.1 KEGG: avn:Avin_08480 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004475199.1 KEGG: hau:Haur_0661 signal recognition particle-docking protein FtsY YP_004475200.1 KEGG: pag:PLES_31531 hypothetical protein YP_004475201.1 KEGG: avn:Avin_34610 hypothetical protein YP_004475202.1 KEGG: psa:PST_1461 hypothetical protein YP_004475203.1 PFAM: protein of unknown function DUF883, ElaB; KEGG: avn:Avin_34590 hypothetical protein YP_004475204.1 KEGG: psb:Psyr_1588 recombination associated protein; HAMAP: exonuclease, RdgC; PFAM: exonuclease, RdgC YP_004475205.1 PFAM: Bile acid:sodium symporter; KEGG: pmy:Pmen_3145 bile acid:sodium symporter YP_004475206.1 PFAM: Small multidrug resistance protein; KEGG: pap:PSPA7_1856 transporter YP_004475207.1 KEGG: pmy:Pmen_3147 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; Major facilitator superfamily MFS-1; SMART: phospholipid/glycerol acyltransferase YP_004475208.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hse:Hsero_1075 LysR family transcription regulator protein YP_004475209.1 KEGG: mrd:Mrad2831_3326 oxidoreductase FAD/NAD(P)-binding subunit; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; ferredoxin YP_004475210.1 PFAM: glutathione S-transferase, N-terminal; glutathione S-transferase, C-terminal; KEGG: hse:Hsero_1073 glutathione S-transferase YP_004475211.1 PFAM: Branched-chain amino acid transport, AzlD; KEGG: pmy:Pmen_3294 branched-chain amino acid transport YP_004475212.1 KEGG: pmy:Pmen_3295 AzlC family protein; manually curated; PFAM: Branched-chain amino acid transport, permease YP_004475213.1 KEGG: pau:PA14_21720 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004475214.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_3328 GCN5-related N-acetyltransferase YP_004475215.1 KEGG: pfl:PFL_4413 sensory box histidine kinase/response regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Sodium/solute symporter; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004475216.1 KEGG: pmy:Pmen_3576 peptidylprolyl isomerase, FKBP-type; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004475217.1 PFAM: glycoside hydrolase, family 28; Fibronectin, type III; KEGG: ppf:Pput_1884 glycoside hydrolase; SMART: Fibronectin, type III YP_004475218.1 PFAM: DNA recombination RmuC; KEGG: pmy:Pmen_3332 hypothetical protein YP_004475219.1 PFAM: Sel1-like; KEGG: pen:PSEEN1403 hypothetical protein YP_004475220.1 KEGG: pmy:Pmen_3336 hypothetical protein YP_004475221.1 KEGG: pmy:Pmen_3337 hypothetical protein YP_004475222.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: pmy:Pmen_3338 hypothetical protein YP_004475223.1 KEGG: mex:Mext_2992 hypothetical protein YP_004475224.1 KEGG: pmy:Pmen_2189 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004475225.1 KEGG: pfl:PFL_3313 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004475226.1 PFAM: FecR protein; KEGG: pfl:PFL_3314 sigma factor regulatory protein FecR/PupR family YP_004475227.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: avn:Avin_22630 TonB-dependent siderophore receptor protein; SMART: Secretin/TonB, short N-terminal YP_004475228.1 KEGG: ppg:PputGB1_4653 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004475229.1 KEGG: pmy:Pmen_1005 hypothetical protein YP_004475230.1 KEGG: pmy:Pmen_1524 hypothetical protein YP_004475231.1 KEGG: pfs:PFLU3613 hypothetical protein YP_004475232.1 KEGG: psp:PSPPH_5176 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004475233.1 PFAM: glutathione S-transferase, C-terminal; glutathione S-transferase, N-terminal; KEGG: pen:PSEEN2011 glutathione S-transferase YghU YP_004475234.1 KEGG: mca:MCA2652 hypothetical protein; TIGRFAM: addiction module antidote protein, CC2985; PFAM: CopG-like DNA-binding YP_004475235.1 PFAM: Plasmid stabilisation system; KEGG: mca:MCA2653 hypothetical protein YP_004475236.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pen:PSEEN4307 tricarboxylate transport protein TctA YP_004475237.1 KEGG: ppg:PputGB1_4394 tricarboxylate transport protein TctB YP_004475238.1 KEGG: ppw:PputW619_1058 hypothetical protein YP_004475239.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppu:PP_3974 LysR family transcriptional regulator YP_004475240.1 PFAM: Endoribonuclease L-PSP; KEGG: ppf:Pput_1859 endoribonuclease L-PSP YP_004475241.1 PFAM: Isochorismatase-like; KEGG: ppf:Pput_1858 isochorismatase hydrolase YP_004475242.1 KEGG: ppf:Pput_1857 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004475243.1 PFAM: protein of unknown function DUF1232; KEGG: ppu:PP_2979 hypothetical protein YP_004475244.1 KEGG: xtr:100302397 zinc finger and BTB domain containing 20 YP_004475245.1 KEGG: psa:PST_2344 cell division inhibitor SulA YP_004475246.1 KEGG: pmy:Pmen_1935 DNA repair nucleotidyltransferase/DNA polymerase-like protein YP_004475247.1 KEGG: pmy:Pmen_1934 error-prone DNA polymerase; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha subunit; HAMAP: DNA polymerase, error-prone; SMART: polymerase/histidinol phosphatase, N-terminal YP_004475248.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pfo:Pfl01_5252 GCN5-related N-acetyltransferase YP_004475249.1 PFAM: Globin, truncated bacterial-like; KEGG: pst:PSPTO_4206 protozoan/cyanobacterial globin family protein YP_004475250.1 KEGG: pmy:Pmen_1228 hypothetical protein YP_004475251.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; HAMP linker domain; Diguanylate cyclase, predicted; KEGG: pmy:Pmen_1227 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain YP_004475252.1 KEGG: pmy:Pmen_1226 hypothetical protein YP_004475253.1 KEGG: pmy:Pmen_1225 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004475254.1 SMART: peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: peptidase S16, ATP-dependent protease La; KEGG: pfs:PFLU1070 ATP-dependent protease; PFAM: peptidase S16, Lon C-terminal; ATPase, AAA-type, core; peptidase S16, lon N-terminal YP_004475255.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_3192 major facilitator transporter YP_004475256.1 PFAM: acyltransferase 3; KEGG: psa:PST_0927 acyltransferase YP_004475257.1 KEGG: pap:PSPA7_5817 glucan biosynthesis protein D; HAMAP: glucans biosynthesis protein G; PFAM: glucan biosynthesis, periplasmic, MdoG C-terminal YP_004475258.1 KEGG: pau:PA14_67065 glucosyltransferase MdoH; HAMAP: glucans biosynthesis glucosyltransferase H; PFAM: glycosyl transferase, family 2 YP_004475259.1 KEGG: avn:Avin_19810 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain YP_004475260.1 KEGG: pmy:Pmen_1389 hypothetical protein YP_004475261.1 PFAM: protein of unknown function DUF2288; KEGG: pmy:Pmen_1388 hypothetical protein YP_004475262.1 PFAM: Extracellular ligand-binding receptor; KEGG: pmy:Pmen_1387 extracellular ligand-binding receptor YP_004475263.1 PFAM: ABC transporter permease; KEGG: pag:PLES_42491 branched-chain amino acid transport protein BraD YP_004475264.1 PFAM: ABC transporter permease; KEGG: pau:PA14_50540 leucine/isoleucine/valine transporter permease subunit YP_004475265.1 PFAM: ABC transporter-like; KEGG: pag:PLES_42511 leucine/isoleucine/valine transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004475266.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_1383 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004475267.1 KEGG: rce:RC1_0020 hypothetical protein YP_004475268.1 KEGG: pfl:PFL_1245 S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004475269.1 PFAM: Domain of unknown function DUF1456; KEGG: psb:Psyr_1389 hypothetical protein YP_004475270.1 KEGG: pmy:Pmen_1705 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0066; PFAM: Uncharacterised protein family UPF0066 YP_004475271.1 KEGG: ppu:PP_1081 glutaredoxin-related protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: glutaredoxin YP_004475272.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: pmy:Pmen_3340 molybdopterin dinucleotide-binding region; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004475273.1 PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: pfl:PFL_4863 ornithine carbamoyltransferase YP_004475274.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: pmy:Pmen_3343 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004475275.1 KEGG: pfl:PFL_4865 PhzF family phenazine biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004475276.1 KEGG: rce:RC1_4076 ABC transporter substrate-binding protein YP_004475277.1 KEGG: pfl:PFL_4866 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain YP_004475278.1 KEGG: pfl:PFL_4867 glycerol uptake facilitator protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein YP_004475279.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: glycerol kinase; HAMAP: glycerol kinase; KEGG: pfl:PFL_4868 glycerol kinase YP_004475280.1 KEGG: pfl:PFL_4869 glycerol-3-phosphate regulon repressor; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004475281.1 KEGG: pmy:Pmen_3348 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004475282.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_1684 alpha/beta hydrolase fold YP_004475283.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_1682 LysR family transcriptional regulator YP_004475284.1 KEGG: bpt:Bpet3617 hypothetical protein YP_004475285.1 PFAM: proteinase inhibitor I42, chagasin; KEGG: pmy:Pmen_1222 secreted protein-like protein YP_004475286.1 TIGRFAM: tRNA (cmo5U34)-methyltransferase; HAMAP: tRNA (cmo5U34)-methyltransferase; KEGG: pfl:PFL_4926 methyltransferase, PFAM: methyltransferase type 11 YP_004475287.1 TIGRFAM: tRNA (mo5U34)-methyltransferase; HAMAP: tRNA (mo5U34)-methyltransferase; KEGG: pmy:Pmen_1481 methyltransferase; PFAM: tRNA (mo5U34)-methyltransferase YP_004475288.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: pau:PA14_54290 pyridoxine 5'-phosphate synthase YP_004475289.1 TIGRFAM: Recombination protein O, RecO; HAMAP: Recombination protein O, RecO; KEGG: pfl:PFL_1073 DNA repair protein RecO; PFAM: Recombination protein O, RecO YP_004475290.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: pfl:PFL_1072 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004475291.1 manually curated; KEGG: pmy:Pmen_1475 ribonuclease III; SMART: ribonuclease III; Double-stranded RNA-binding; TIGRFAM: ribonuclease III, bacterial; PFAM: ribonuclease III; Double-stranded RNA-binding; HAMAP: ribonuclease III, bacterial YP_004475292.1 KEGG: pmy:Pmen_1474 hypothetical protein YP_004475293.1 TIGRFAM: peptidase S26A, signal peptidase I; KEGG: pag:PLES_45751 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region YP_004475294.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein LepA; KEGG: pmy:Pmen_1472 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal YP_004475295.1 SMART: PDZ/DHR/GLGF; TIGRFAM: peptidase S1C, Do; KEGG: ppw:PputW619_1070 protease Do; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004475296.1 KEGG: pmy:Pmen_1469 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB YP_004475297.1 PFAM: Anti sigma-E protein RseA, N-terminal; Anti sigma-E protein RseA, C-terminal; KEGG: pfo:Pfl01_1363 anti sigma-E protein, RseA YP_004475298.1 KEGG: pfs:PFLU1467 RNA polymerase sigma factor AlgU; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004475299.1 TIGRFAM: L-aspartate oxidase; KEGG: ppu:PP_1426 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004475300.1 KEGG: avn:Avin_13640 hypothetical protein YP_004475301.1 PFAM: protein of unknown function DUF339; KEGG: pmy:Pmen_1464 hypothetical protein YP_004475302.1 KEGG: pmy:Pmen_1463 GcvT-like aminomethyltransferase; TIGRFAM: Folate-binding, YgfZ; PFAM: glycine cleavage T-protein, N-terminal; glycine cleavage T-protein, C-terminal barrel YP_004475303.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pmy:Pmen_1462 signal transduction protein YP_004475304.1 KEGG: pmy:Pmen_1460 integral membrane sensor signal transduction histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004475305.1 KEGG: pag:PLES_45871 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004475306.1 KEGG: mbr:MONBRDRAFT_10784 hypothetical protein YP_004475307.1 KEGG: pag:PLES_45891 hypothetical protein YP_004475308.1 KEGG: psp:PSPPH_3964 TctB YP_004475309.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: ppf:Pput_4305 hypothetical protein YP_004475310.1 KEGG: pmy:Pmen_1454 ammonia monooxygenase; TIGRFAM: AbrB duplication, membrane protein; PFAM: ammonia monooxygenase YP_004475311.1 KEGG: pmy:Pmen_1382 hypothetical protein YP_004475312.1 TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: pmy:Pmen_1381 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like YP_004475313.1 PFAM: Extracellular ligand-binding receptor; KEGG: pmy:Pmen_1376 extracellular ligand-binding receptor YP_004475314.1 PFAM: Crotonase, core; KEGG: pmy:Pmen_1374 enoyl-CoA hydratase YP_004475315.1 KEGG: pmy:Pmen_1373 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core YP_004475316.1 KEGG: pfo:Pfl01_0136 type I secretion membrane fusion protein, HlyD; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004475317.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system; KEGG: pfo:Pfl01_0135 ABC transporter-like; PFAM: ABC transporter-like YP_004475318.1 KEGG: pfl:PFL_0134 agglutination protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004475319.1 TIGRFAM: Type 1 secretion, target domain, C-terminal; PFAM: von Willebrand factor, type A; Na-Ca exchanger/integrin-beta4; Haemolysin-type calcium-binding repeat; KEGG: pat:Patl_2658 hypothetical protein; SMART: von Willebrand factor, type A; Na-Ca exchanger/integrin-beta4 YP_004475320.1 KEGG: pfl:PFL_0132 hypothetical protein YP_004475321.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain; KEGG: pfl:PFL_0131 GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted; HAMP linker domain; Diguanylate phosphodiesterase, EAL domain YP_004475322.1 PFAM: transglutaminase-like cysteine peptidase, predicted; KEGG: ppg:PputGB1_0182 hypothetical protein YP_004475323.1 KEGG: pfs:PFLU1439 lipoprotein YP_004475324.1 TIGRFAM: ABC transporter urea utilisation-associated, substrate-binding protein; KEGG: psb:Psyr_3972 ABC transporter substrate-binding protein YP_004475325.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_1365 binding-protein-dependent transport systems inner membrane component YP_004475326.1 PFAM: ABC transporter-like; KEGG: pfo:Pfl01_1341 ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004475327.1 KEGG: psa:PST_2009 hypothetical protein; TIGRFAM: urea carboxylase; PFAM: Domain of unknown function DUF1989 YP_004475328.1 KEGG: pmy:Pmen_1359 hypothetical protein; TIGRFAM: urea carboxylase; PFAM: Domain of unknown function DUF1989 YP_004475330.1 SMART: Allophanate hydrolase subunit 2; Biotin carboxylase, C-terminal; Allophanate hydrolase subunit 1; TIGRFAM: Urea carboxylase; Allophanate hydrolase subunit 2; KEGG: pmy:Pmen_1358 biotin carboxylation domain-containing protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Allophanate hydrolase subunit 1; Biotin/lipoyl attachment YP_004475331.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_1357 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004475332.1 KEGG: pmy:Pmen_1356 hypothetical protein YP_004475333.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: pmy:Pmen_1355 ribosomal small subunit pseudouridine synthase A; SMART: RNA-binding S4 YP_004475334.1 KEGG: pmy:Pmen_1354 alpha/beta hydrolase fold YP_004475335.1 manually curated; KEGG: ypy:YPK_3142 hypothetical protein YP_004475336.1 PFAM: substrate-binding protein; KEGG: ddc:Dd586_0870 substrate-binding protein YP_004475337.1 PFAM: ABC transporter permease; KEGG: asa:ASA_2209 ABC-type Fe(III) dicitrate transporter permease YP_004475338.1 PFAM: ABC transporter-like; KEGG: mmw:Mmwyl1_1619 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004475339.1 KEGG: ppw:PputW619_2891 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004475340.1 PFAM: ThiJ/PfpI; KEGG: ddc:Dd586_2787 ThiJ/PfpI domain protein YP_004475341.1 KEGG: ppg:PputGB1_0296 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004475342.1 KEGG: ppg:PputGB1_0297 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004475343.1 KEGG: ppf:Pput_0288 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004475344.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: pmy:Pmen_3496 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related YP_004475345.1 TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: pmy:Pmen_3497 pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004475346.1 PFAM: protein of unknown function DUF2133; KEGG: pmy:Pmen_3498 hypothetical protein YP_004475347.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: histidyl-tRNA synthetase, class IIa, subgroup; KEGG: psa:PST_3030 histidyl-tRNA synthetase YP_004475348.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: pmy:Pmen_3500 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004475349.1 KEGG: pfo:Pfl01_4602 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004475350.1 KEGG: pmy:Pmen_3502 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1 YP_004475351.1 TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; HAMAP: ribosomal RNA large subunit methyltransferase RlmN; KEGG: pmy:Pmen_3503 radical SAM protein; PFAM: Radical SAM YP_004475352.1 SMART: nucleoside diphosphate kinase; HAMAP: nucleoside diphosphate kinase; KEGG: psa:PST_3035 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase YP_004475353.1 KEGG: pmy:Pmen_3505 hypothetical protein; TIGRFAM: ISC system FeS cluster assembly, IscX; PFAM: ISC system FeS cluster assembly, IscX YP_004475354.1 KEGG: pmy:Pmen_3506 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type; PFAM: ferredoxin YP_004475355.1 TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; HAMAP: ISC system FeS cluster assembly, HscA chaperone; KEGG: pfo:Pfl01_4608 chaperone protein HscA; PFAM: Heat shock protein 70 YP_004475356.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Co-chaperone Hsc20; KEGG: pmy:Pmen_3508 co-chaperone HscB; HAMAP: Co-chaperone Hsc20; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal YP_004475357.1 KEGG: pen:PSEEN1012 iron-sulfur cluster assembly protein IscA; TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004475358.1 KEGG: psp:PSPPH_1310 scaffold protein; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal YP_004475359.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Cysteine desulfurase; HAMAP: Cysteine desulfurase; KEGG: psa:PST_3042 cysteine desulfurase YP_004475360.1 KEGG: pmy:Pmen_3512 BadM/Rrf2 family transcriptional regulator; TIGRFAM: ISC system FeS cluster assembly, IscR transcription factor; transcription regulator Rrf2; PFAM: transcription regulator Rrf2 YP_004475361.1 KEGG: pmy:Pmen_3513 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase YP_004475362.1 KEGG: psa:PST_3045 methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004475363.1 PFAM: Inositol monophosphatase; KEGG: pmy:Pmen_3515 inositol-phosphate phosphatase YP_004475364.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: pap:PSPA7_1294 hypothetical protein YP_004475365.1 KEGG: pmy:Pmen_3517 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal YP_004475366.1 KEGG: pmy:Pmen_3518 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal YP_004475367.1 KEGG: ppg:PputGB1_0877 preprotein translocase subunit YajC; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC YP_004475368.1 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: psp:PSPPH_1300 queuine tRNA-ribosyltransferase YP_004475369.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: Queuosine biosynthesis protein; KEGG: pmy:Pmen_3521 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004475370.1 KEGG: psa:PST_3054 cold acclimation protein B; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004475371.1 PFAM: RDD; KEGG: ppg:PputGB1_0989 RDD domain-containing protein YP_004475372.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: pmy:Pmen_3525 permease YjgP/YjgQ family protein YP_004475373.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: pmy:Pmen_3526 permease YjgP/YjgQ family protein YP_004475374.1 HAMAP: peptidase, M17, probable cytosol aminopeptidase; KEGG: pmy:Pmen_3527 leucyl aminopeptidase; PFAM: peptidase M17, leucyl aminopeptidase, C-terminal; peptidase M17, leucyl aminopeptidase, N-terminal YP_004475375.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: pmy:Pmen_3528 DNA polymerase III, chi subunit YP_004475376.1 KEGG: pmy:Pmen_3529 hypothetical protein YP_004475377.1 TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; KEGG: pmy:Pmen_3530 valyl-tRNA synthetase YP_004475378.1 PFAM: Uncharacterised conserved protein UCP037266; KEGG: pmy:Pmen_3533 hypothetical protein YP_004475379.1 PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: pmy:Pmen_3534 citrate transporter YP_004475380.1 HAMAP: ribosomal RNA large subunit methyltransferase F; KEGG: pmy:Pmen_3535 SAM-dependent methyltransferase; PFAM: S-adenosyl-L-methionine dependent methyltransferase, predicted YP_004475381.1 KEGG: ppg:PputGB1_2312 hypothetical protein YP_004475382.1 PFAM: FAD dependent oxidoreductase; KEGG: pmy:Pmen_1450 FAD dependent oxidoreductase YP_004475383.1 KEGG: psa:PST_1534 monovalent cation/H+ antiporter subunit G; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit YP_004475384.1 PFAM: Multiple resistance and pH regulation protein F; KEGG: psa:PST_1533 multisubunit Na+/H+ antiporter, MnhF subunit YP_004475385.1 PFAM: cation antiporter; KEGG: pmy:Pmen_1444 cation antiporter YP_004475386.1 KEGG: psa:PST_1531 monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004475387.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: pmy:Pmen_1442 monovalent cation/H+ antiporter subunit C YP_004475388.1 KEGG: pmy:Pmen_1441 monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; Na+/H+ antiporter MnhB subunit-related protein YP_004475389.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: ppw:PputW619_1151 hypothetical protein YP_004475390.1 TIGRFAM: glycerate kinase; KEGG: pag:PLES_42711 glycerate kinase; PFAM: glycerate kinase YP_004475391.1 PFAM: gluconate transporter; KEGG: pap:PSPA7_4328 transporter YP_004475392.1 PFAM: sugar diacid recognition; Helix-turn-helix, Fis-type; KEGG: pmy:Pmen_1437 CdaR family transcriptional regulator YP_004475393.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: pmy:Pmen_1436 pyridoxamine 5'-phosphate oxidase YP_004475394.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ppw:PputW619_1149 OmpA/MotB domain-containing protein YP_004475395.1 PFAM: beta-lactamase-related; KEGG: pmy:Pmen_1434 beta-lactamase YP_004475396.1 KEGG: avn:Avin_19460 agarase YP_004475397.1 SMART: Helicase, ATP-dependent, c2 type; KEGG: pmy:Pmen_1427 ATP-dependent DNA helicase DinG YP_004475398.1 KEGG: pap:PSPA7_4335 hypothetical protein YP_004475399.1 KEGG: pfl:PFL_1277 hypothetical protein YP_004475400.1 KEGG: pfo:Pfl01_1222 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1145 YP_004475401.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pmy:Pmen_1422 OmpA/MotB domain-containing protein YP_004475402.1 KEGG: pfo:Pfl01_1219 hypothetical protein YP_004475403.1 KEGG: psa:PST_1519 hypothetical protein; HAMAP: Uncharacterised protein family UPF0225; PFAM: SEC-C motif YP_004475404.1 KEGG: pmy:Pmen_1418 hypothetical protein YP_004475405.1 SMART: Water stress and hypersensitive response domain; KEGG: pmy:Pmen_1417 water stress/hypersensitive response protein YP_004475406.1 PFAM: SEC-C motif; KEGG: ppg:PputGB1_4299 SecC motif-containing protein YP_004475407.1 PFAM: Domain of unknown function DUF2489; KEGG: pmy:Pmen_1415 hypothetical protein YP_004475408.1 PFAM: peptidase S45, penicillin amidase; KEGG: pmy:Pmen_1414 penicillin amidase YP_004475409.1 KEGG: psa:PST_2409 assimilatory nitrite reductase large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004475410.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; BFD-like [2Fe-2S]-binding domain; KEGG: pmy:Pmen_2094 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004475411.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: psa:PST_2412 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004475412.1 PFAM: Nitrate/nitrite sensing protein; ANTAR; KEGG: psa:PST_4091 nitrate-and nitrite-responsive positive regulator YP_004475413.1 KEGG: psa:PST_4092 nitrate ABC transporter substrate-binding protein YP_004475414.1 KEGG: psa:PST_4093 nitrate ABC transporter permease; TIGRFAM: Nitrate transport permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004475415.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Nitrate transport ATP-binding subunit C/D; KEGG: psa:PST_4094 nitrate ABC transporter ATP-binding protein, PFAM: ABC transporter-like YP_004475416.1 KEGG: psa:PST_2665 hypothetical protein YP_004475417.1 PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase; KEGG: pmy:Pmen_1408 deoxycytidine triphosphate deaminase YP_004475418.1 KEGG: pmy:Pmen_1407 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004475419.1 PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: ppw:PputW619_1127 hypothetical protein YP_004475420.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pap:PSPA7_4687 hypothetical protein YP_004475421.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; TIGRFAM: methionyl-tRNA synthetase, class Ia; methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: methionyl-tRNA synthetase; KEGG: pmy:Pmen_1405 methionyl-tRNA synthetase YP_004475422.1 KEGG: pap:PSPA7_1643 hypothetical protein YP_004475423.1 KEGG: pfl:PFL_4846 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: electron transport complex, RnfB; PFAM: Fe-S cluster; 4Fe-4S binding domain YP_004475424.1 SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; TIGRFAM: Endonuclease III/Nth; KEGG: pmy:Pmen_1398 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004475425.1 KEGG: pmy:Pmen_1397 hypothetical protein YP_004475426.1 TIGRFAM: Thioredoxin reductase; KEGG: pau:PA14_53290 thioredoxin reductase 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004475427.1 KEGG: pmy:Pmen_0976 sulfate transport protein CysZ; HAMAP: Uncharacterised protein family CysZ, gammaproteobacteria; PFAM: Uncharacterised protein family CysZ YP_004475428.1 PFAM: glycosyl transferase, group 1; KEGG: pmy:Pmen_0974 glycosyl transferase, group 1 YP_004475429.1 KEGG: pmy:Pmen_3641 peroxiredoxin; PFAM: glutathione peroxidase YP_004475430.1 manually curated; KEGG: pmy:Pmen_3642 peptidylprolyl isomerase, FKBP-type; PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004475431.1 manually curated; KEGG: psb:Psyr_1008 hypothetical protein YP_004475432.1 PFAM: acetate/butyrate kinase; TIGRFAM: acetate kinase; HAMAP: acetate kinase; KEGG: pag:PLES_44821 acetate kinase YP_004475433.1 TIGRFAM: phosphate acetyltransferase; KEGG: pmy:Pmen_3645 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG YP_004475434.1 KEGG: psp:PSPPH_1055 acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004475435.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; PAS fold; KEGG: pmy:Pmen_3647 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; PAS YP_004475436.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: pmy:Pmen_3649 OmpA/MotB domain-containing protein YP_004475437.1 KEGG: pmy:Pmen_3651 beta-lactamase domain-containing protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004475438.1 PFAM: protein of unknown function DUF1329; KEGG: pmy:Pmen_3659 hypothetical protein YP_004475439.1 PFAM: protein of unknown function DUF1302; KEGG: ppw:PputW619_4424 hypothetical protein YP_004475440.1 KEGG: pmy:Pmen_3661 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004475441.1 TIGRFAM: Thiolase; KEGG: pap:PSPA7_1182 acyl-CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004475442.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pmy:Pmen_3663 lysine exporter protein LysE/YggA YP_004475443.1 KEGG: pmy:Pmen_3664 glycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004475444.1 KEGG: pmy:Pmen_3665 16S rRNA m(2)G 1207 methyltransferase; HAMAP: ribosomal RNA small subunit methyltransferase C; PFAM: methyltransferase small; methyltransferase small, N-terminal YP_004475445.1 PFAM: Uncharacterised protein family UPF0016; KEGG: pmy:Pmen_3666 hypothetical protein YP_004475446.1 PFAM: peptidase M48; KEGG: pfo:Pfl01_4714 peptidase M48, Ste24p YP_004475447.1 PFAM: protein of unknown function DUF159; KEGG: pmy:Pmen_3670 hypothetical protein YP_004475448.1 KEGG: pmy:Pmen_3671 hypothetical protein YP_004475449.1 KEGG: pst:PSPTO_1141 hypothetical protein YP_004475450.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: avn:Avin_41290 acyltransferase YP_004475451.1 PFAM: Uncharacterised protein family, YajG; KEGG: nve:NEMVE_v1g221767 hypothetical protein YP_004475452.1 KEGG: psp:PSPPH_1026 hypothetical protein YP_004475453.1 PFAM: Malate:quinone-oxidoreductase; TIGRFAM: Malate:quinone-oxidoreductase; KEGG: pmy:Pmen_3677 malate:quinone oxidoreductase; HAMAP: Malate:quinone-oxidoreductase YP_004475454.1 KEGG: pmy:Pmen_3020 RNA polymerase sigma factor RpoS; TIGRFAM: RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4 YP_004475455.1 KEGG: pmy:Pmen_3021 peptidase M23B; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup YP_004475456.1 PFAM: protein of unknown function DUF368; KEGG: psa:PST_1570 hypothetical protein YP_004475457.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: pmy:Pmen_3023 protein-L-isoaspartate O-methyltransferase YP_004475458.1 PFAM: Survival protein SurE-like phosphatase/nucleotidase; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; KEGG: psp:PSPPH_3812 stationary phase survival protein SurE YP_004475459.1 TIGRFAM: Pseudouridine synthase, TruD; HAMAP: Pseudouridine synthase, TruD; KEGG: pmy:Pmen_3025 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD YP_004475460.1 TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: ppg:PputGB1_1172 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004475461.1 PFAM: Ferritin/Dps protein; KEGG: cse:Cseg_0918 ferritin Dps family protein YP_004475462.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: pmy:Pmen_3027 carboxylesterase; PFAM: esterase YP_004475463.1 TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: psa:PST_1563 alcohol dehydrogenase class III; SMART: polyketide synthase, enoylreductase YP_004475464.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_1199 LysR family transcriptional regulator YP_004475465.1 KEGG: pmy:Pmen_3030 hypothetical protein YP_004475466.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pen:PSEEN4198 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004475467.1 PFAM: Septum formation initiator; KEGG: pmy:Pmen_3032 cell division protein FtsB YP_004475468.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: ppf:Pput_4165 phosphopyruvate hydratase YP_004475469.1 PFAM: DAHP synthetase I/KDSA; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: psa:PST_1556 2-dehydro-3-deoxyphosphooctonate aldolase YP_004475470.1 PFAM: CTP synthase, N-terminal; glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: pmy:Pmen_3035 CTP synthetase YP_004475471.1 KEGG: pmy:Pmen_3036 tRNA(Ile)-lysidine synthetase; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; Lysidine-tRNA(Ile) synthetase, substrate-binding domain; manually curated; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; SMART: Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: Lysidine-tRNA(Ile) synthetase YP_004475472.1 PFAM: acetyl-CoA carboxylase, alpha subunit; TIGRFAM: acetyl-CoA carboxylase, alpha subunit; HAMAP: acetyl-CoA carboxylase, alpha subunit; KEGG: pmy:Pmen_3037 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_004475473.1 SMART: polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: pmy:Pmen_3038 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; nucleic acid binding, OB-fold, tRNA/helicase-type YP_004475474.1 KEGG: pmy:Pmen_3039 ribonuclease HII; PFAM: ribonuclease HII/HIII YP_004475475.1 PFAM: glycosyl transferase, family 19; TIGRFAM: glycosyl transferase, family 19; HAMAP: glycosyl transferase, family 19; KEGG: pmy:Pmen_3040 lipid-A-disaccharide synthase YP_004475476.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: pen:PSEEN4208 UDP-N-acetylglucosamine acyltransferase YP_004475477.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; KEGG: pfl:PFL_1187 (3R)-hydroxymyristoyl-ACP dehydratase; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004475478.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: pag:PLES_13891 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat YP_004475479.1 KEGG: pmy:Pmen_3044 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH) YP_004475480.1 KEGG: pmy:Pmen_3045 surface antigen (D15); TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004475481.1 TIGRFAM: peptidase M50, membrane-associated zinc metallopeptidase; PFAM: peptidase M50; PDZ/DHR/GLGF; KEGG: pmy:Pmen_3046 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF YP_004475482.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: pmy:Pmen_3047 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004475483.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pmy:Pmen_3048 phosphatidate cytidylyltransferase YP_004475484.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: ppw:PputW619_4078 undecaprenyl diphosphate synthase YP_004475485.1 TIGRFAM: ribosome recycling factor; HAMAP: ribosome recycling factor, bacterial-like; KEGG: psp:PSPPH_3837 ribosome recycling factor; PFAM: ribosome recycling factor YP_004475486.1 TIGRFAM: Uridylate kinase, bacteria; KEGG: pmy:Pmen_3051 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004475487.1 TIGRFAM: translation elongation factor EFTs/EF1B; HAMAP: translation elongation factor EFTs/EF1B; KEGG: pmy:Pmen_3052 elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004475488.1 KEGG: pmy:Pmen_3053 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: ribosomal protein S2 YP_004475489.1 TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: psa:PST_1536 methionine aminopeptidase; PFAM: peptidase M24, structural domain YP_004475490.1 KEGG: pmy:Pmen_3055 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/glutamine-synthetase adenylyltransferase; nucleotidyl transferase domain; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; TIGRFAM: protein-PII uridylyltransferase; HAMAP: protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain YP_004475491.1 KEGG: pap:PSPA7_4877 chemotactic transducer PctB; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004475492.1 TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; KEGG: pmy:Pmen_3056 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/classII YP_004475493.1 PFAM: methyltransferase small; KEGG: psa:PST_0141 HemK family modification methylase YP_004475494.1 KEGG: pmy:Pmen_2302 hypothetical protein YP_004475495.1 KEGG: avn:Avin_47080 Mn-containing catalase; PFAM: Catalase, manganese YP_004475496.1 PFAM: protein of unknown function DUF892; KEGG: pmy:Pmen_2257 hypothetical protein YP_004475497.1 KEGG: pau:PA14_36480 hypothetical protein YP_004475498.1 PFAM: Stress-induced protein, KGG, repeat; KEGG: pmy:Pmen_2359 hypothetical protein YP_004475499.1 KEGG: psa:PST_1217 outer membrane protein YP_004475500.1 PFAM: protein of unknown function DUF1264; KEGG: ppf:Pput_1863 hypothetical protein YP_004475501.1 KEGG: pmy:Pmen_3766 integral membrane sensor hybrid histidine kinase; PFAM: 7TM-DISM receptor, extracellular domain, type 1; 7TM-DISM receptor, extracellular domain, type 2; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004475502.1 PFAM: substrate-binding protein; KEGG: pmy:Pmen_3767 substrate-binding protein YP_004475503.1 KEGG: pmy:Pmen_3772 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1 YP_004475504.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; KEGG: pae:PA3976 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase YP_004475505.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: pfl:PFL_5429 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III YP_004475506.1 KEGG: psb:Psyr_4343 Sel1 repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_004475507.1 KEGG: pmy:Pmen_3777 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1820 YP_004475508.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; methylthiotransferase; KEGG: pmy:Pmen_3779 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM YP_004475509.1 PFAM: PhoH-like protein; KEGG: psa:PST_3762 PhoH-like protein YP_004475510.1 TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: psa:PST_3763 metalloprotease; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted YP_004475511.1 KEGG: pmy:Pmen_3782 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; transporter-associated domain; SMART: Cystathionine beta-synthase, core YP_004475512.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: psa:PST_3765 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004475513.1 PFAM: Domain of unknown function DUF218; KEGG: avn:Avin_09020 hypothetical protein YP_004475514.1 KEGG: pap:PSPA7_1122 hypothetical protein YP_004475515.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: pfl:PFL_5439 leucyl-tRNA synthetase YP_004475516.1 PFAM: Lipopolysccharide assembly, LptE; KEGG: pmy:Pmen_3787 rare lipoprotein B YP_004475517.1 TIGRFAM: DNA polymerase III, delta subunit; KEGG: pmy:Pmen_3788 DNA polymerase III subunit delta; PFAM: DNA polymerase III, delta YP_004475518.1 PFAM: protein of unknown function DUF331; KEGG: psp:PSPPH_4397 hypothetical protein YP_004475519.1 KEGG: pmy:Pmen_3790 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: peptidoglycan binding-like YP_004475520.1 KEGG: pfl:PFL_3063 acyl-CoA dehydrogenase; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain YP_004475521.1 KEGG: gpb:HDN1F_25350 sodium/hydrogen antiporter; TIGRFAM: Na+/H+ exchanger, YjcE-like, bacteria; PFAM: Cation/H+ exchanger YP_004475522.1 KEGG: ppw:PputW619_4088 arsenate reductase and related; TIGRFAM: transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004475523.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria; KEGG: pmy:Pmen_3059 tetrahydrodipicolinate N-succinyltransferase-like protein YP_004475524.1 KEGG: pmy:Pmen_3060 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004475525.1 PFAM: Fe-S metabolism associated SufE; KEGG: avn:Avin_39110 Fe-S metabolism associated SufE YP_004475526.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: pmy:Pmen_3064 UBA/ThiF-type NAD/FAD binding protein YP_004475527.1 PFAM: glycosyl transferase, family 2; glycoside hydrolase, family 17; KEGG: avn:Avin_39140 glycosyl transferase, family 2 YP_004475528.1 TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: pfl:PFL_1165 succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase M20, dimerisation YP_004475529.1 KEGG: pmy:Pmen_3067 rRNA (guanine-N(1)-)-methyltransferase; PFAM: methyltransferase type 11 YP_004475530.1 KEGG: pmy:Pmen_3068 hypothetical protein YP_004475531.1 KEGG: pmy:Pmen_4431 NAD(P)(+) transhydrogenase (AB-specific); PFAM: alanine dehydrogenase/PNT, C-terminal; alanine dehydrogenase/PNT, N-terminal YP_004475532.1 KEGG: pmy:Pmen_4432 NAD/NADP transhydrogenase alpha subunit-like protein YP_004475533.1 KEGG: pen:PSEEN0114 pyridine nucleotide transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit YP_004475534.1 KEGG: pen:PSEEN0112 hypothetical protein YP_004475535.1 KEGG: pfl:PFL_0110 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02448; PFAM: Conserved hypothetical protein CHP02448 YP_004475536.1 KEGG: pfl:PFL_0108 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02448; PFAM: Conserved hypothetical protein CHP02448 YP_004475537.1 KEGG: pmy:Pmen_4438 hypothetical protein YP_004475538.1 KEGG: pst:PSPTO_1893 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004475539.1 KEGG: psp:PSPPH_3453 DNA-binding response regulator QseB, PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004475540.1 KEGG: ppg:PputGB1_4628 hypothetical protein YP_004475541.1 KEGG: pfl:PFL_3850 cytochrome b561 family protein YP_004475542.1 PFAM: Sulfatase; KEGG: mei:Msip34_2274 sulfatase YP_004475543.1 PFAM: Metallo-dependent phosphatase; KEGG: pct:PC1_2403 metallophosphoesterase YP_004475544.1 KEGG: esa:ESA_04148 hypothetical protein YP_004475545.1 PFAM: XdhC- CoxI; KEGG: pst:PSPTO_2657 xanthine dehydrogenase accessory factor XdhC YP_004475546.1 KEGG: psa:PST_0217 hypothetical protein YP_004475547.1 KEGG: pfl:PFL_2454 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004475548.1 KEGG: ppw:PputW619_2284 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Nitrate/nitrite sensing protein; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004475549.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pmy:Pmen_4439 glutathione-dependent formaldehyde-activating, GFA YP_004475550.1 PFAM: hypothetical protein; KEGG: pmy:Pmen_4440 hypothetical protein YP_004475551.1 KEGG: ppw:PputW619_5080 CitMHS family citrate/H+ symporter; TIGRFAM: Citrate transporter; PFAM: Divalent ion symporter YP_004475552.1 PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN0103 TerC family efflux transporter YP_004475553.1 KEGG: psa:PST_4031 hypothetical protein YP_004475554.1 KEGG: pfl:PFL_0103 Na+/Pi cotransporter family protein; TIGRFAM: Na/Pi-cotransporter; Na/Pi co-transporter II-related; PFAM: Na/Pi-cotransporter; PhoU YP_004475555.1 PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; KEGG: pfl:PFL_0102 M16 family peptidase YP_004475556.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: pfl:PFL_1526 mandelate racemase/muconate lactonizing enzyme family protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004475557.1 PFAM: Amidohydrolase 2; KEGG: pol:Bpro_2843 amidohydrolase 2 YP_004475558.1 KEGG: ctt:CtCNB1_3097 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004475559.1 PFAM: NHL repeat; KEGG: pol:Bpro_2842 hypothetical protein YP_004475560.1 KEGG: msu:MS0050 DctP protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004475561.1 KEGG: pmu:PM1253 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004475562.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ctt:CtCNB1_3099 tripartite ATP-independent periplasmic YP_004475564.1 HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: pap:PSPA7_3077 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA YP_004475565.1 PFAM: Amidohydrolase 2; KEGG: pap:PSPA7_3078 hypothetical protein YP_004475566.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pae:PA2210 probable major facilitator superfamily (MFS) transporter YP_004475567.1 KEGG: pap:PSPA7_3081 hypothetical protein YP_004475568.1 KEGG: pag:PLES_31171 hypothetical protein YP_004475569.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pau:PA14_36170 hypothetical protein YP_004475570.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pag:PLES_31191 transcriptional regulator YP_004475571.1 SMART: phospholipid/glycerol acyltransferase; TIGRFAM: glycerol-3-phosphate O-acyltransferase PlsB; KEGG: pmy:Pmen_3091 glycerol-3-phosphate acyltransferase; HAMAP: glycerol-3-phosphate O-acyltransferase PlsB; PFAM: phospholipid/glycerol acyltransferase YP_004475572.1 PFAM: peptidoglycan binding-like; KEGG: abo:ABO_1992 hypothetical protein YP_004475573.1 KEGG: pmy:Pmen_3106 hypothetical protein YP_004475574.1 PFAM: Acriflavin resistance protein; KEGG: pmy:Pmen_3350 acriflavin resistance protein YP_004475575.1 KEGG: pmy:Pmen_3351 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004475576.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pmy:Pmen_3352 TetR family transcriptional regulator YP_004475577.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pde:Pden_2817 glutathione-dependent formaldehyde-activating, GFA YP_004475578.1 PFAM: Amidohydrolase 1; TIGRFAM: Imidazolonepropionase; HAMAP: Imidazolonepropionase; KEGG: pmy:Pmen_4073 imidazolonepropionase YP_004475579.1 PFAM: Ureohydrolase; TIGRFAM: formiminoglutamase; HAMAP: formiminoglutamase; KEGG: pmy:Pmen_4072 formimidoylglutamase YP_004475580.1 PFAM: nucleoside recognition; KEGG: pmy:Pmen_4071 nucleoside recognition domain-containing protein YP_004475581.1 PFAM: Urocanase; TIGRFAM: Urocanase; HAMAP: Urocanase; KEGG: pmy:Pmen_4070 urocanate hydratase YP_004475582.1 PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; HAMAP: histidine ammonia-lyase; KEGG: pmy:Pmen_4069 histidine ammonia-lyase YP_004475583.1 TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: pmy:Pmen_4068 GntR family transcriptional regulator; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004475584.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psp:PSPPH_1758 LysR family transcriptional regulator YP_004475585.1 PFAM: Drug/metabolite transporter; KEGG: psp:PSPPH_1757 membrane protein YP_004475586.1 KEGG: pmy:Pmen_2345 xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004475587.1 KEGG: pmy:Pmen_2346 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding YP_004475588.1 KEGG: pmy:Pmen_2347 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; ferredoxin YP_004475589.1 KEGG: pmy:Pmen_3353 hypothetical protein; HAMAP: protein of unknown function DUF548; PFAM: protein of unknown function DUF548 YP_004475590.1 KEGG: ote:Oter_4237 peptidoglycan-binding LysM YP_004475591.1 PFAM: Extensin-like, C-terminal; KEGG: pmy:Pmen_3354 extensin family protein YP_004475592.1 KEGG: pag:PLES_13021 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_004475593.1 KEGG: pmy:Pmen_3690 hypothetical protein YP_004475594.1 TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: avn:Avin_13480 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004475595.1 HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: pmy:Pmen_3687 co-chaperonin GroES; SMART: Chaperonin Cpn10 YP_004475596.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: pmy:Pmen_3686 FxsA YP_004475597.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_3684 3-ketoacyl-(acyl-carrier-protein) reductase; SMART: polyketide synthase/Fatty acid synthase, KR YP_004475598.1 PFAM: protein of unknown function DUF481; KEGG: pmy:Pmen_0944 hypothetical protein YP_004475599.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: pmy:Pmen_0942 methylated-DNA-(protein)-cysteine S-methyltransferase YP_004475600.1 KEGG: pfo:Pfl01_1198 AmpG permease; TIGRFAM: AmpG-related permease; PFAM: Major facilitator superfamily MFS-1 YP_004475601.1 PFAM: Mechanosensitive ion channel MscS; KEGG: pfl:PFL_4774 mechanosensitive ion channel family protein YP_004475602.1 KEGG: pmy:Pmen_0939 nucleotide-binding protein; HAMAP: protein of unknown function DUF520; PFAM: protein of unknown function DUF520 YP_004475603.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Signal transduction response regulator, receiver domain; Diguanylate cyclase, predicted; KEGG: pmy:Pmen_0938 response regulator receiver modulated diguanylate cyclase; SMART: Signal transduction response regulator, receiver domain; Diguanylate cyclase, predicted YP_004475604.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: pmy:Pmen_0937 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004475605.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: pmy:Pmen_0936 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004475606.1 TIGRFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: nve:NEMVE_v1g224812 hypothetical protein; PFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type YP_004475607.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: pae:PA2043 hypothetical protein YP_004475608.1 PFAM: hypothetical protein; KEGG: pmy:Pmen_0140 hypothetical protein YP_004475609.1 KEGG: pmy:Pmen_0934 hypothetical protein; TIGRFAM: Mutator MutT; PFAM: Thiamine monophosphate synthase; NUDIX hydrolase domain YP_004475610.1 PFAM: glutathione S-transferase, N-terminal; KEGG: psa:PST_3164 glutathione S-transferase YP_004475611.1 PFAM: arginine biosynthesis protein ArgJ; TIGRFAM: arginine biosynthesis protein ArgJ; HAMAP: arginine biosynthesis protein ArgJ; KEGG: pap:PSPA7_4973 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_004475612.1 SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: pmy:Pmen_0931 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif YP_004475613.1 PFAM: peptidase M23; KEGG: pmy:Pmen_0930 peptidase M23B YP_004475614.1 PFAM: protein of unknown function DUF721/UPF0232; KEGG: pmy:Pmen_0929 hypothetical protein YP_004475615.1 TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: pfo:Pfl01_4667 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase YP_004475616.1 TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: pmy:Pmen_0927 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004475617.1 TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: psp:PSPPH_4104 cell division protein FtsA; SMART: Cell division protein FtsA domain YP_004475618.1 PFAM: Cell division protein FtsQ; polypeptide-transport-associated, FtsQ-type; KEGG: pen:PSEEN4482 cell division protein FtsQ YP_004475619.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: pmy:Pmen_0924 D-alanine--D-alanine ligase YP_004475620.1 PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: pmy:Pmen_0923 UDP-N-acetylmuramate--L-alanine ligase YP_004475621.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: psa:PST_1082 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: glycosyl transferase, family 28; glycosyl transferase, family 28, C-terminal YP_004475622.1 KEGG: pmy:Pmen_0921 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein YP_004475623.1 TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: avn:Avin_13230 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004475624.1 TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: pfl:PFL_5064 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004475625.1 TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: pmy:Pmen_0918 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004475626.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: pmy:Pmen_0917 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004475627.1 KEGG: pfs:PFLU0941 peptidoglycan glycosyltransferase cell division-like protein; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004475628.1 KEGG: pst:PSPTO_4415 cell division protein FtsL, TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL YP_004475629.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: pmy:Pmen_0914 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004475630.1 PFAM: MraZ domain; manually curated; TIGRFAM: MraZ; KEGG: pmy:Pmen_0913 cell division protein MraZ; HAMAP: MraZ YP_004475631.1 KEGG: pmy:Pmen_0912 uroporphyrin-III C/tetrapyrrole methyltransferase; TIGRFAM: Uncharacterised protein family UPF0011; PFAM: Tetrapyrrole methylase YP_004475632.1 PFAM: LppC lipoprotein; KEGG: pmy:Pmen_0911 LppC family lipoprotein YP_004475633.1 PFAM: Uncharacterised protein family UPF0102; manually curated; TIGRFAM: Uncharacterised protein family UPF0102; KEGG: pfl:PFL_5073 hypothetical protein; HAMAP: Uncharacterised protein family UPF0102 YP_004475634.1 TIGRFAM: phosphoheptose isomerase, subgroup; HAMAP: phosphoheptose isomerase; KEGG: pmy:Pmen_0909 phosphoheptose isomerase; PFAM: Sugar isomerase (SIS) YP_004475635.1 KEGG: pmy:Pmen_0908 transport-associated; PFAM: transport-associated; SMART: transport-associated and nodulation domain, bacteria YP_004475636.1 KEGG: psa:PST_3306 polynucleotide phosphorylase/polyadenylase; PFAM: polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; ribosomal protein S1, RNA-binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase; HAMAP: polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology YP_004475637.1 KEGG: pmy:Pmen_3605 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial-type; PFAM: ribosomal protein S15 YP_004475638.1 TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: pmy:Pmen_3606 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal YP_004475639.1 TIGRFAM: ribosome-binding factor A; HAMAP: ribosome-binding factor A; KEGG: pfs:PFLU5252 ribosome-binding factor A; PFAM: ribosome-binding factor A YP_004475640.1 KEGG: pmy:Pmen_3608 translation initiation factor IF-2; TIGRFAM: translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; translation initiation factor IF-2, N-terminal; translation elongation factor EFTu/EF1A, domain 2 YP_004475641.1 TIGRFAM: transcription termination factor NusA; transcription termination factor NusA, C-terminal duplication; PFAM: transcription factor NusA, N-terminal; ribosomal protein S1, RNA-binding domain; KEGG: pmy:Pmen_3609 transcription elongation factor NusA; SMART: RNA-binding domain, S1 YP_004475642.1 KEGG: pmy:Pmen_3610 hypothetical protein; HAMAP: ribosome maturation factor RimP; PFAM: ribosome maturation factor RimP YP_004475643.1 manually curated; TIGRFAM: Preprotein translocase SecG subunit; KEGG: pmy:Pmen_3611 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit YP_004475644.1 TIGRFAM: Triosephosphate isomerase; KEGG: pmy:Pmen_3612 triosephosphate isomerase; PFAM: Triosephosphate isomerase YP_004475645.1 TIGRFAM: phosphoglucosamine mutase; KEGG: ppw:PputW619_0716 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004475646.1 PFAM: Pterin-binding; manually curated; KEGG: pmy:Pmen_3614 dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase YP_004475647.1 SMART: ATPase, AAA+ type, core; TIGRFAM: peptidase M41, FtsH; KEGG: pmy:Pmen_3615 membrane protease FtsH catalytic subunit; PFAM: peptidase M41; ATPase, AAA-type, core; peptidase M41, FtsH extracellular YP_004475648.1 KEGG: pag:PLES_51371 cell division protein FtsJ; HAMAP: ribosomal RNA large subunit methyltransferase E; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ YP_004475649.1 KEGG: pmy:Pmen_3617 hypothetical protein; TIGRFAM: RNA-binding, CRM domain, prokaryote; PFAM: RNA-binding, CRM domain YP_004475650.1 KEGG: pmy:Pmen_3618 hypothetical protein YP_004475651.1 TIGRFAM: transcription elongation factor GreA; HAMAP: transcription elongation factor greA; KEGG: pmy:Pmen_3619 transcription elongation factor GreA; PFAM: transcription elongation factor, GreA/GreB, N-terminal; transcription elongation factor, GreA/GreB, C-terminal YP_004475652.1 SMART: methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: pmy:Pmen_3620 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; methylglyoxal synthase-like domain YP_004475653.1 TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: pmy:Pmen_3621 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; glutamine amidotransferase class-I, C-terminal YP_004475654.1 PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase, bacterial/plant; KEGG: pmy:Pmen_3622 dihydrodipicolinate reductase YP_004475655.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: pmy:Pmen_3623 chaperone protein DnaJ; HAMAP: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, N-terminal YP_004475656.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: pmy:Pmen_3624 molecular chaperone DnaK; PFAM: Heat shock protein 70 YP_004475657.1 KEGG: pmy:Pmen_3625 heat shock protein GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004475658.1 KEGG: pmy:Pmen_3626 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC YP_004475659.1 PFAM: Ferric-uptake regulator; KEGG: pap:PSPA7_5484 ferric uptake regulation protein YP_004475660.1 PFAM: Lipoprotein SmpA/OmlA; KEGG: pfl:PFL_0823 outer membrane lipoprotein OmlA YP_004475661.1 KEGG: pmy:Pmen_3629 hypothetical protein; HAMAP: Uncharacterised protein family UPF0125; PFAM: Uncharacterised protein family UPF0125 YP_004475662.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: ppg:PputGB1_4733 cyclase/dehydrase YP_004475663.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: pmy:Pmen_3632 SsrA-binding protein; PFAM: SsrA-binding protein YP_004475664.1 KEGG: pmy:Pmen_3633 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004475665.1 KEGG: pfs:PFLU5278 glycolate permease; TIGRFAM: L-lactate permease; PFAM: L-lactate permease YP_004475666.1 HAMAP: L-lactate dehydrogenase [cytochrome]; KEGG: pag:PLES_51561 L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004475667.1 KEGG: pmy:Pmen_3636 D-lactate dehydrogenase; PFAM: D-lactate dehydrogenase, membrane binding, C-terminal; FAD linked oxidase, N-terminal YP_004475668.1 KEGG: pmy:Pmen_3742 AsnC family transcriptional regulator; PFAM: transcription regulator AsnC-type, C-terminal; HTH transcriptional regulator, Crp; SMART: transcription regulator AsnC-type YP_004475669.1 KEGG: avn:Avin_09950 hypothetical protein YP_004475670.1 PFAM: Globin, subset; KEGG: pmy:Pmen_3744 globin YP_004475671.1 KEGG: pmy:Pmen_3745 ribosomal large subunit pseudouridine synthase E; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004475672.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psa:PST_1308 LysR family transcriptional regulator YP_004475673.1 PFAM: Endoribonuclease L-PSP; KEGG: vap:Vapar_5597 endoribonuclease L-PSP YP_004475674.1 KEGG: pmy:Pmen_3791 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB YP_004475675.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: pmy:Pmen_3792 lipoate-protein ligase B YP_004475676.1 KEGG: avn:Avin_08440 hypothetical protein; HAMAP: protein of unknown function DUF493; PFAM: protein of unknown function DUF493 YP_004475677.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: ppf:Pput_4678 serine-type D-Ala-D-Ala carboxypeptidase; SMART: peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004475678.1 KEGG: pmy:Pmen_3795 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase; Sporulation-related domain YP_004475679.1 TIGRFAM: Lytic transglycosylase MltB; KEGG: pfl:PFL_5450 lytic murein transglycosylase B YP_004475680.1 KEGG: psa:PST_3780 rod-shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004475681.1 TIGRFAM: Penicillin-binding protein 2; KEGG: pmy:Pmen_3798 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004475682.1 TIGRFAM: ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: pag:PLES_09721 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted YP_004475683.1 KEGG: pmy:Pmen_3800 iojap-like protein; TIGRFAM: ribosome-associated, Iojap-like; PFAM: ribosome-associated, Iojap-like YP_004475684.1 PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: pfl:PFL_5455 nicotinic acid mononucleotide adenylyltransferase YP_004475685.1 PFAM: Aldehyde dehydrogenase domain; TIGRFAM: gamma-glutamyl phosphate reductase GPR; HAMAP: glutamate-5-semialdehyde dehydrogenase; KEGG: pmy:Pmen_3802 gamma-glutamyl phosphate reductase YP_004475686.1 KEGG: ppu:PP_4813 PAP2 family protein/DedA family protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SNARE associated Golgi protein; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004475687.1 KEGG: pmy:Pmen_3807 peptidase S16, lon domain-containing protein; PFAM: peptidase S16, lon N-terminal; SMART: peptidase S16, lon N-terminal YP_004475688.1 PFAM: LrgB-like protein; KEGG: pmy:Pmen_3808 LrgB family protein YP_004475689.1 PFAM: Uncharacterised protein family LrgA/YohJ; KEGG: pmy:Pmen_3809 LrgA family protein YP_004475690.1 PFAM: peptidase C13, legumain; MORN motif; KEGG: pmy:Pmen_3811 MORN repeat-containing protein YP_004475691.1 PFAM: Semialdehyde dehydrogenase, NAD-binding; KEGG: pmy:Pmen_3812 NAD-dependent epimerase/dehydratase YP_004475692.1 KEGG: pmy:Pmen_1525 CitMHS family citrate/H+ symporter; TIGRFAM: Citrate transporter; PFAM: Divalent ion symporter YP_004475693.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO_0766 oxidoreductase, short-chain dehydrogenase/reductase YP_004475694.1 PFAM: Sodium/calcium exchanger membrane region; KEGG: pfl:PFL_0722 calcium/proton antiporter YP_004475695.1 PFAM: adenosine/AMP deaminase; TIGRFAM: adenosine deaminase; HAMAP: adenosine deaminase; KEGG: pmy:Pmen_3706 adenosine deaminase YP_004475696.1 PFAM: DR1885-like metal-binding protein; KEGG: pmy:Pmen_3707 hypothetical protein YP_004475697.1 PFAM: peptidase M4, propeptide, PepSY; PepSY-associated TM helix; KEGG: pfs:PFLU0594 hypothetical protein YP_004475698.1 KEGG: pmy:Pmen_3710 hypothetical protein YP_004475699.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_3711 LysR family transcriptional regulator YP_004475700.1 SMART: polyketide synthase, enoylreductase; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; KEGG: pmy:Pmen_3712 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like YP_004475701.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pmy:Pmen_0992 Rieske (2Fe-2S) domain-containing protein YP_004475702.1 TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: avn:Avin_42620 sugar fermentation stimulation protein A; PFAM: Sugar fermentation stimulation protein YP_004475703.1 KEGG: psb:Psyr_0836 hypothetical protein; PFAM: Aminotransferase, class I/classII YP_004475704.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: pmy:Pmen_3585 TraR/DksA family transcriptional regulator YP_004475705.1 TIGRFAM: glutamyl-Q tRNA(Asp) synthetase; HAMAP: glutamyl-Q tRNA(Asp) synthetase; KEGG: pmy:Pmen_3586 glutamyl-Q tRNA(Asp) synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004475706.1 KEGG: nve:NEMVE_v1g222076 hypothetical protein YP_004475707.1 KEGG: pen:PSEEN4903 triacylglycerol lipase; PFAM: Alpha/beta hydrolase fold-1 YP_004475708.1 KEGG: azo:azo0342 N-hydroxyarylamine O-acetyltransferase YP_004475709.1 PFAM: Lipoprotein SmpA/OmlA; KEGG: psa:PST_1092 DNA-binding transcriptional activator OsmE YP_004475710.1 PFAM: adenylylsulphate kinase, C-terminal; protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; adenylylsulphate kinase, C-terminal; HAMAP: adenylylsulphate kinase, C-terminal; Sulphate adenylyltransferase, large subunit; KEGG: pmy:Pmen_0891 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_004475711.1 PFAM: phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulphate adenylyltransferase, small subunit; KEGG: psp:PSPPH_4133 sulfate adenylyltransferase subunit 2 YP_004475712.1 KEGG: ppg:PputGB1_4547 hypothetical protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_004475713.1 KEGG: pmy:Pmen_0888 2-alkenal reductase; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004475714.1 manually curated; KEGG: pst:PSPTO_4510 ISPsy11, transposase OrfA YP_004475715.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: histidinol-phosphate aminotransferase; HAMAP: histidinol-phosphate aminotransferase; KEGG: pmy:Pmen_0885 histidinol-phosphate aminotransferase YP_004475716.1 PFAM: histidinol dehydrogenase, prokaryotic-type; TIGRFAM: histidinol dehydrogenase, prokaryotic-type; HAMAP: histidinol dehydrogenase, prokaryotic-type; KEGG: psa:PST_1046 histidinol dehydrogenase YP_004475717.1 PFAM: ATP phosphoribosyltransferase, catalytic domain; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; HAMAP: ATP phosphoribosyltransferase; KEGG: pmy:Pmen_0883 ATP phosphoribosyltransferase catalytic subunit YP_004475718.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: pmy:Pmen_0882 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004475719.1 PFAM: BolA protein; KEGG: psa:PST_1043 toluene-tolerance protein YP_004475720.1 KEGG: pag:PLES_48311 hypothetical protein YP_004475721.1 PFAM: Toluene tolerance Ttg2; KEGG: pmy:Pmen_0879 toluene tolerance family protein YP_004475722.1 PFAM: Mammalian cell entry-related; KEGG: pmy:Pmen_0878 hypothetical protein YP_004475723.1 KEGG: pag:PLES_48341 permease of ABC transporter; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140 YP_004475724.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_0876 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004475725.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: pmy:Pmen_0875 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_004475726.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; KEGG: pmy:Pmen_0874 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004475727.1 PFAM: Lipopolysccharide assembly, LptC-related; KEGG: psp:PSPPH_4148 hypothetical protein YP_004475728.1 KEGG: pmy:Pmen_0872 OstA family protein; TIGRFAM: Lipopolysccharide assembly, LptA; PFAM: Organic solvent tolerance-like, N-terminal YP_004475729.1 PFAM: ABC transporter-like; KEGG: pfl:PFL_0916 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004475730.1 KEGG: pmy:Pmen_0870 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; RNA polymerase sigma factor 54, DNA-binding YP_004475731.1 KEGG: pmy:Pmen_0869 SSU ribosomal protein S30P / sigma 54 modulation protein; TIGRFAM: ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: ribosomal protein S30Ae/sigma 54 modulation protein YP_004475732.1 KEGG: psa:PST_1029 phosphotransferase enzyme IIA; TIGRFAM: phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2 YP_004475733.1 HAMAP: ATPase, P-loop-containing; KEGG: psa:PST_1028 hypothetical protein YP_004475734.1 KEGG: ppf:Pput_0987 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphotransferase system, phosphocarrier HPr protein; PFAM: phosphotransferase system, phosphocarrier HPr protein YP_004475736.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: pag:PLES_48471 superoxide dismutase YP_004475737.1 KEGG: pst:PSPTO_4460 hypothetical protein YP_004475738.1 HAMAP: Fumarate hydratase, class II; KEGG: avn:Avin_27180 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal YP_004475739.1 KEGG: avn:Avin_27170 fur associated gene A protein YP_004475740.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pfo:Pfl01_0847 microcin-processing peptidase 1 YP_004475741.1 PFAM: ribosome-associated, YjgA; KEGG: pmy:Pmen_0864 hypothetical protein YP_004475742.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pmy:Pmen_0863 peptidase U62, modulator of DNA gyrase YP_004475743.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pap:PSPA7_5089 hypothetical protein YP_004475744.1 TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: pmy:Pmen_0861 membrane protein-like protein YP_004475745.1 TIGRFAM: ribonuclease E/G; PFAM: RNA-binding protein AU-1/ribonuclease E/G; ribosomal protein S1, RNA-binding domain; KEGG: pmy:Pmen_0860 RNAse G; SMART: RNA-binding domain, S1 YP_004475746.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: avn:Avin_12680 Maf-like protein; PFAM: Maf-like protein YP_004475747.1 KEGG: pmy:Pmen_0858 rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD YP_004475748.1 KEGG: avn:Avin_12660 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004475749.1 KEGG: pmy:Pmen_0856 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004475750.1 TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Glu-tRNAGln amidotransferase, C subunit; KEGG: psa:PST_1014 aspartyl/glutamyl-tRNA amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit YP_004475751.1 PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: pmy:Pmen_0854 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_004475752.1 SMART: Asn/Gln amidotransferase; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: psa:PST_1012 aspartyl/glutamyl-tRNA amidotransferase subunit B; HAMAP: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase YP_004475753.1 KEGG: pag:PLES_48651 RplA family protein; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase YP_004475754.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: pfs:PFLU3989 LysR family transcriptional regulator YP_004475755.1 KEGG: ppf:Pput_3347 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; HPP; SMART: Cystathionine beta-synthase, core YP_004475756.1 PFAM: protein of unknown function DUF2135; KEGG: pap:PSPA7_5101 hypothetical protein YP_004475757.1 PFAM: protein of unknown function DUF2300, secreted; KEGG: pag:PLES_48681 hypothetical protein YP_004475758.1 PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin; KEGG: pap:PSPA7_5103 hypothetical protein YP_004475759.1 PFAM: protein of unknown function DUF1175; KEGG: pag:PLES_48701 hypothetical protein YP_004475760.1 PFAM: protein of unknown function DUF2138; KEGG: pag:PLES_48711 hypothetical protein YP_004475761.1 PFAM: protein of unknown function DUF2135; KEGG: pfo:Pfl01_5003 hypothetical protein YP_004475762.1 PFAM: hypothetical protein; KEGG: pmy:Pmen_0849 hypothetical protein YP_004475763.1 KEGG: pmy:Pmen_0848 two component fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain YP_004475764.1 KEGG: pmy:Pmen_0847 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004475765.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppg:PputGB1_4247 major facilitator transporter YP_004475766.1 PFAM: protein of unknown function DUF541; KEGG: pmy:Pmen_0846 hypothetical protein YP_004475767.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pmy:Pmen_0845 extracellular solute-binding protein YP_004475768.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pst:PSPTO_4557 peptide ABC transporter periplasmic peptide-binding protein YP_004475769.1 PFAM: peptidase M24, structural domain; Creatinase; KEGG: pmy:Pmen_0843 peptidase M24 YP_004475770.1 KEGG: pmy:Pmen_0842 cupin 2 domain-containing protein; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004475771.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pmy:Pmen_0841 extracellular solute-binding protein YP_004475772.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pen:PSEEN1057 dipeptide ABC transporter periplasmic dipeptide-binding protein YP_004475773.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0840 alkaline phosphatase YP_004475774.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_4264 dipeptide ABC transporter permease YP_004475775.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: pmy:Pmen_0838 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004475776.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: pap:PSPA7_5120 dipeptide transporter ATP-binding subunit; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004475777.1 KEGG: pmy:Pmen_0793 flavodoxin/nitric oxide synthase; PFAM: Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase FAD/NAD(P)-binding YP_004475778.1 KEGG: hch:HCH_06649 hypothetical protein YP_004475779.1 PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: pag:PLES_49711 glutamate dehydrogenase; SMART: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004475780.1 KEGG: pmy:Pmen_1196 regulator of RNA terminal phosphate cyclase; PFAM: Regulator of RNA terminal phosphate cyclase; RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core YP_004475781.1 PFAM: TROVE; KEGG: pfl:PFL_2303 60-kDa SS-A/Ro ribonucleoprotein YP_004475782.1 PFAM: Uncharacterised protein family UPF0027; KEGG: pmy:Pmen_1193 hypothetical protein YP_004475783.1 KEGG: pfl:PFL_2306 hypothetical protein YP_004475784.1 PFAM: nucleotidyltransferase, predicted; KEGG: pmy:Pmen_1192 nucleotidyltransferase-like protein YP_004475785.1 TIGRFAM: RNA 3'-terminal phosphate cyclase, subgroup; KEGG: pfl:PFL_2308 RNA 3'-terminal-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase-like; RNA 3'-terminal phosphate cyclase, insert domain YP_004475786.1 TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: psa:PST_0939 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004475787.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-3; PAS fold; PAS fold-4; KEGG: pmy:Pmen_0760 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif YP_004475788.1 KEGG: ppf:Pput_0702 serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase YP_004475789.1 KEGG: pmy:Pmen_4042 hypothetical protein YP_004475790.1 KEGG: pmy:Pmen_4041 integral membrane sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004475791.1 KEGG: pmy:Pmen_4040 two component LuxR family transcriptional regulator; PFAM: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004475792.1 KEGG: pag:PLES_01271 hypothetical protein YP_004475793.1 KEGG: pmy:Pmen_4038 methyltransferase type 12; TIGRFAM: methyltransferase-like; PFAM: protein of unknown function DUF2260; methyltransferase type 12 YP_004475794.1 KEGG: pmy:Pmen_4037 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor YP_004475795.1 KEGG: dar:Daro_2207 hypothetical protein YP_004475796.1 PFAM: NERD; DNA topoisomerase, type IA, zn finger; KEGG: pmy:Pmen_4033 NERD domain-containing protein YP_004475797.1 KEGG: bra:BRADO4076 branched chain amino-acid ABC transporter substrate-binding protein YP_004475798.1 PFAM: ABC transporter permease; KEGG: ara:Arad_8298 UreA or short-chain amide ABC transporter YP_004475799.1 PFAM: ABC transporter permease; KEGG: ara:Arad_8299 UreA or short-chain amide ABC transporter YP_004475800.1 PFAM: ABC transporter-like; KEGG: ara:Arad_8300 UreA or short-chain amide ABC transporter; SMART: ATPase, AAA+ type, core YP_004475801.1 KEGG: bbt:BBta_4448 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004475802.1 PFAM: Amidase; KEGG: bch:Bcen2424_4287 amidase YP_004475803.1 KEGG: pmy:Pmen_4596 branched-chain amino acid ABC transporter systems periplasmic component-like protein YP_004475804.1 PFAM: ANTAR; KEGG: pmy:Pmen_4597 response regulator receiver/ANTAR domain-containing protein YP_004475805.1 KEGG: azc:AZC_0729 beta alanine--pyruvate transaminase; PFAM: Aminotransferase class-III YP_004475806.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: azo:azo1920 succinate-semialdehyde dehydrogenase [NAD(P)+]; PFAM: Aldehyde dehydrogenase domain YP_004475807.1 KEGG: bgf:BC1003_4639 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004475808.1 PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: ppf:Pput_5275 transketolase, central region; SMART: transketolase-like, pyrimidine-binding domain YP_004475809.1 KEGG: ppf:Pput_5276 transketolase domain-containing protein; PFAM: transketolase, N-terminal YP_004475810.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfo:Pfl01_2720 general substrate transporter YP_004475811.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ppf:Pput_5278 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004475812.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfo:Pfl01_2722 LysR family transcriptional regulator YP_004475813.1 SMART: Diguanylate cyclase, predicted; manually curated; TIGRFAM: Diguanylate cyclase, predicted; KEGG: har:HEAR1734 GGDEF domain-containing protein; PFAM: Diguanylate cyclase, predicted YP_004475814.1 KEGG: psb:Psyr_4479 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004475815.1 KEGG: mmw:Mmwyl1_0865 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004475816.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppw:PputW619_3111 major facilitator transporter YP_004475817.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppw:PputW619_3113 LysR family transcriptional regulator YP_004475818.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ppw:PputW619_3114 hypothetical protein YP_004475819.1 KEGG: ppw:PputW619_3116 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004475820.1 PFAM: Amino acid permease domain; KEGG: ppf:Pput_3171 amino acid permease-associated region YP_004475821.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: pst:PSPTO_2478 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004475822.1 TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: pfo:Pfl01_5005 exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII, small subunit YP_004475823.1 KEGG: pmy:Pmen_3841 farnesyl-diphosphate synthase; PFAM: polyprenyl synthetase YP_004475824.1 KEGG: pmy:Pmen_3844 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; SMART: transketolase-like, pyrimidine-binding domain YP_004475825.1 KEGG: alv:Alvin_0884 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004475826.1 KEGG: pfs:PFLU0573 hypothetical protein YP_004475827.1 KEGG: pmy:Pmen_3847 hypothetical protein YP_004475828.1 PFAM: GTP cyclohydrolase II, RibA; TIGRFAM: GTP cyclohydrolase II, RibA; HAMAP: GTP cyclohydrolase II, RibA; KEGG: pmy:Pmen_3848 GTP cyclohydrolase II YP_004475829.1 PFAM: protein of unknown function DUF192; KEGG: dia:Dtpsy_1560 protein of unknown function DUF192 YP_004475830.1 TIGRFAM: peptide chain release factor 3; Small GTP-binding protein; HAMAP: peptide chain release factor 3; KEGG: ppw:PputW619_4306 peptide chain release factor 3; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2 YP_004475831.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related; KEGG: psa:PST_0991 glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004475832.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: glo:Glov_1508 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004475833.1 PFAM: glycosyl transferase, group 1; KEGG: gpb:HDN1F_31030 predicted glycosyl transferase, group 1 YP_004475834.1 PFAM: glycosyl transferase, family 2; KEGG: nhl:Nhal_3630 rhamnosyltransferase YP_004475835.1 PFAM: methyltransferase type 11; KEGG: afr:AFE_0077 hypothetical protein YP_004475836.1 PFAM: glycosyl transferase, family 2; KEGG: paa:Paes_2074 glycosyl transferase 2 YP_004475837.1 PFAM: polysaccharide biosynthesis protein; KEGG: gpb:HDN1F_30950 hypothetical protein YP_004475838.1 PFAM: glycosyl transferase, family 2; KEGG: gpb:HDN1F_30910 predicted glycosyl transferase, family 2 YP_004475839.1 KEGG: tgr:Tgr7_0795 hypothetical protein YP_004475840.1 PFAM: Fimbrial protein pilin; Prepilin-type cleavage/methylation, N-terminal; KEGG: sfr:Sfri_3782 methylation site containing protein YP_004475841.1 KEGG: pmy:Pmen_0775 type IV-A pilus assembly ATPase PilB; TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal YP_004475842.1 PFAM: Type II secretion system F domain; KEGG: pmy:Pmen_0774 type II secretion system protein YP_004475843.1 KEGG: pmy:Pmen_0773 prepilin peptidase; PFAM: peptidase A24A, N-terminal; peptidase A24A, prepilin type IV YP_004475844.1 PFAM: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: pfo:Pfl01_4823 dephospho-CoA kinase YP_004475845.1 KEGG: pag:PLES_49131 zinc-binding protein; HAMAP: Uncharacterised protein family, zinc-binding; PFAM: Uncharacterised protein family, zinc-binding YP_004475846.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: psb:Psyr_0791 MOSC YP_004475847.1 KEGG: ppw:PputW619_4544 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004475848.1 PFAM: protein of unknown function DUF1631; KEGG: pmy:Pmen_0764 hypothetical protein YP_004475849.1 PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_0763 type IV pilus assembly PilZ YP_004475850.1 KEGG: pmy:Pmen_0391 formate dehydrogenase accessory protein FdhD; TIGRFAM: formate dehydrogenase, subunit FdhD; PFAM: formate dehydrogenase, subunit FdhD YP_004475851.1 TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; KEGG: pag:PLES_55741 oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain YP_004475852.1 KEGG: pfl:PFL_1562 lipoprotein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001 YP_004475853.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: pau:PA14_68460 hypothetical protein YP_004475854.1 PFAM: Thioesterase superfamily; KEGG: pmy:Pmen_0382 thioesterase superfamily protein YP_004475855.1 KEGG: pmy:Pmen_0381 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004475856.1 KEGG: dme:Dmel_CG32767 CG32767 gene product from transcript CG32767-RD YP_004475857.1 KEGG: psa:PST_0301 ribosomal subunit interface protein YP_004475858.1 PFAM: Nitroreductase-like; KEGG: psa:PST_0294 nitroreductase YP_004475859.1 KEGG: pmy:Pmen_0373 hypothetical protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140 YP_004475860.1 PFAM: ABC transporter-like; KEGG: pmy:Pmen_0372 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004475861.1 PFAM: Mammalian cell entry-related; KEGG: pmy:Pmen_0371 hypothetical protein YP_004475862.1 PFAM: protein of unknown function DUF330; KEGG: pmy:Pmen_0370 hypothetical protein YP_004475863.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: pmy:Pmen_3639 ATPase; SMART: ATPase, AAA+ type, core YP_004475864.1 KEGG: pmy:Pmen_0970 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004475865.1 KEGG: pmy:Pmen_0969 ribosomal large subunit pseudouridine synthase D; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4 YP_004475866.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: pmy:Pmen_0968 DNA uptake lipoprotein-like protein YP_004475867.1 KEGG: pmy:Pmen_0967 hypothetical protein YP_004475868.1 KEGG: pmy:Pmen_0966 sensor protein PilS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004475869.1 KEGG: pmy:Pmen_0965 two-component response regulator PilR; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004475870.1 PFAM: FAD dependent oxidoreductase; manually curated; KEGG: pfo:Pfl01_4841 FAD dependent oxidoreductase; TIGRFAM: glycine oxidase ThiO YP_004475871.1 KEGG: net:Neut_1837 fimbrial pilin related signal peptide protein YP_004475872.1 KEGG: mca:MCA0091 hypothetical protein YP_004475873.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: nhl:Nhal_0911 type IV pilus modification protein PilV YP_004475874.1 KEGG: neu:NE1749 hypothetical protein YP_004475875.1 KEGG: nwa:Nwat_2105 type IV pilus assembly protein PilX YP_004475876.1 PFAM: PilC domain; KEGG: xca:xccb100_1671 Tfp pilus assembly protein YP_004475877.1 KEGG: xoo:XOO3195 type IV pilin YP_004475878.1 KEGG: pst:PSPTO_3254 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004475879.1 PFAM: oligogalacturonate-specific porin; KEGG: pfs:PFLU2275 hypothetical protein YP_004475880.1 PFAM: ABC transporter-like; KEGG: psp:PSPPH_3002 dipeptide ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004475881.1 PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal; KEGG: pst:PSPTO_3251 dipeptide ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004475882.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ppf:Pput_1881 binding-protein-dependent transport systems inner membrane component YP_004475883.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ppf:Pput_1880 extracellular solute-binding protein YP_004475884.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pfs:PFLU2279 ABC transporter membrena protein YP_004475885.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pfs:PFLU2278 ABC transporter substrate-binding protein YP_004475886.1 KEGG: psp:PSPPH_2998 mandelate racemase/muconate lactonizing enzyme family protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004475887.1 PFAM: Uncharacterised protein family UPF0057; KEGG: pfs:PFLU5603 hypothetical protein YP_004475888.1 PFAM: NADPH-dependent FMN reductase; KEGG: pmy:Pmen_4056 NADPH-dependent FMN reductase YP_004475889.1 KEGG: pau:PA14_06640 acyl-CoA dehydrogenase; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA oxidase/dehydrogenase, central domain; acyl-CoA dehydrogenase, N-terminal YP_004475890.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_4080 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004475891.1 KEGG: pmy:Pmen_4081 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA oxidase/dehydrogenase, central domain; acyl-CoA dehydrogenase, N-terminal YP_004475892.1 KEGG: pmy:Pmen_4082 hypothetical protein YP_004475893.1 KEGG: pmy:Pmen_4083 hypothetical protein YP_004475894.1 TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; KEGG: pmy:Pmen_4084 dithiobiotin synthetase; PFAM: Cobyrinic acid a,c-diamide synthase YP_004475895.1 KEGG: pmy:Pmen_4085 biotin biosynthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: methyltransferase type 11 YP_004475896.1 KEGG: pfl:PFL_5691 BioH protein; PFAM: Alpha/beta hydrolase fold-1 YP_004475897.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: pfl:PFL_5692 8-amino-7-oxononanoate synthase YP_004475898.1 KEGG: psa:PST_3866 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Biotin/thiamin synthesis-associated protein; Elongator protein 3/MiaB/NifB YP_004475899.1 PFAM: phosphoribosyltransferase; KEGG: avn:Avin_05970 amidophosphoribosyltransferase YP_004475900.1 KEGG: pmy:Pmen_4091 ModE family transcriptional regulator; TIGRFAM: Molybdenum-binding protein, N-terminal; Molybdenum-pterin binding; PFAM: HTH transcriptional regulator, LysR; transport-associated OB, type 1 YP_004475901.1 PFAM: Aminoglycoside phosphotransferase; KEGG: pau:PA14_06330 serine/threonine protein kinase YP_004475902.1 KEGG: pmy:Pmen_4093 transporter DMT superfamily protein; TIGRFAM: RarD protein; PFAM: Drug/metabolite transporter YP_004475903.1 PFAM: Amino acid-binding ACT; KEGG: pmy:Pmen_4094 amino acid-binding ACT domain-containing protein YP_004475904.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pau:PA14_06300 GNAT family acetyltransferase YP_004475905.1 PFAM: Malate synthase; TIGRFAM: Malate synthase G; HAMAP: Malate synthase G; KEGG: pmy:Pmen_4096 malate synthase G YP_004475906.1 PFAM: acyltransferase 3; KEGG: psa:PST_2375 hypothetical protein YP_004475907.1 KEGG: psa:PST_2494 endoglucanase precursor(endo-1,4-beta-glucanase)protein; PFAM: glycoside hydrolase, family 5 YP_004475908.1 KEGG: pmy:Pmen_4097 CBS domain-containing protein; PFAM: Domain of unknown function DUF294, nucleotidyltransferase ; Cystathionine beta-synthase, core; Cyclic nucleotide-binding domain; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: Cystathionine beta-synthase, core; Cyclic nucleotide-binding domain YP_004475909.1 KEGG: pmy:Pmen_4098 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease YP_004475910.1 PFAM: peptidase U32; KEGG: pmy:Pmen_4099 peptidase U32 YP_004475911.1 KEGG: pmy:Pmen_4106 hypothetical protein YP_004475912.1 PFAM: Uncharacterised protein family, inner membrane CreD; KEGG: pmy:Pmen_4107 hypothetical protein YP_004475913.1 KEGG: pmy:Pmen_4121 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_004475914.1 KEGG: pmy:Pmen_4119 sensory histidine kinase CreC; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004475915.1 KEGG: pap:PSPA7_0568 DNA-binding response regulator CreB; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004475916.1 KEGG: pmy:Pmen_4122 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004475917.1 PFAM: protein of unknown function DUF785; KEGG: pmy:Pmen_4123 hypothetical protein YP_004475918.1 PFAM: ABC transporter-like; KEGG: pap:PSPA7_5813 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004475919.1 KEGG: pap:PSPA7_5814 ABC transporter permease; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004475920.1 KEGG: pfo:Pfl01_0375 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004475921.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: ppw:PputW619_0438 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004475922.1 KEGG: pmy:Pmen_0513 proline iminopeptidase; TIGRFAM: peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1 YP_004475923.1 KEGG: pmy:Pmen_0512 hypothetical protein YP_004475924.1 PFAM: Lipocalin-like; KEGG: pmy:Pmen_0511 lipocalin family protein YP_004475925.1 KEGG: pfo:Pfl01_0355 lipoprotein YP_004475926.1 PFAM: protein of unknown function DUF924; KEGG: pmy:Pmen_0509 hypothetical protein YP_004475927.1 HAMAP: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; KEGG: pap:PSPA7_5843 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase YP_004475928.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; PAS fold-4; KEGG: pmy:Pmen_0507 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted YP_004475929.1 PFAM: Uncharacterised protein family UPF0153; KEGG: pmy:Pmen_0504 hypothetical protein YP_004475930.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: pmy:Pmen_1678 GDP-mannose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004475931.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: pmy:Pmen_1677 mannose-1-phosphate guanylyltransferase (GDP); PFAM: nucleotidyl transferase; Mannose-6-phosphate isomerase, type II, C-terminal YP_004475932.1 KEGG: pmy:Pmen_1676 hypothetical protein YP_004475933.1 PFAM: Type IV pilus assembly PilZ; KEGG: pmy:Pmen_1675 type IV pilus assembly PilZ YP_004475934.1 KEGG: pen:PSEEN3456 hypothetical protein YP_004475935.1 KEGG: pen:PSEEN3457 alginate specific ion channel AlgE-like YP_004475936.1 PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: pen:PSEEN3458 alginate O-acetylation protein AlgI-2 YP_004475937.1 KEGG: pen:PSEEN3459 alginate O-acetylation protein AlgJ-like YP_004475938.1 KEGG: pmy:Pmen_1670 hypothetical protein YP_004475939.1 KEGG: pen:PSEEN3461 alginate biosynthesis protein AlgX-like YP_004475940.1 KEGG: pmy:Pmen_1668 poly(beta-D-mannuronate) lyase YP_004475941.1 KEGG: pmy:Pmen_1667 hypothetical protein YP_004475942.1 KEGG: pap:PSPA7_5846 hypothetical protein YP_004475943.1 PFAM: protein of unknown function DUF2339, transmembrane; KEGG: pag:PLES_55041 hypothetical protein YP_004475944.1 KEGG: pfl:PFL_0388 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal YP_004475945.1 SMART: THUMP; TIGRFAM: Thiamine biosynthesis protein; KEGG: pen:PSEEN0391 thiamine biosynthesis protein ThiI; HAMAP: Thiamine biosynthesis protein; PFAM: Thiamine biosynthesis protein, C-terminal; THUMP YP_004475946.1 KEGG: pmy:Pmen_4140 L-glutamine synthetase; TIGRFAM: glutamine synthetase type I; PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp YP_004475947.1 KEGG: pmy:Pmen_4141 hypothetical protein YP_004475948.1 KEGG: pmy:Pmen_4142 hypothetical protein YP_004475949.1 KEGG: psb:Psyr_4821 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004475950.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: pmy:Pmen_4144 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004475951.1 manually curated; KEGG: pfl:PFL_0376 hypothetical protein YP_004475952.1 KEGG: pmy:Pmen_4242 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004475953.1 TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: pmy:Pmen_4243 preprotein translocase subunit SecB; PFAM: Bacterial protein export chaperone SecB YP_004475954.1 KEGG: psb:Psyr_4883 glutaredoxin; TIGRFAM: glutaredoxin, GrxC; PFAM: glutaredoxin YP_004475955.1 KEGG: psa:PST_4079 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004475956.1 PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: psa:PST_4080 phosphoglyceromutase YP_004475957.1 PFAM: peptidase M23; KEGG: pmy:Pmen_4247 peptidase M23B YP_004475958.1 SMART: peptidase S41; PDZ/DHR/GLGF; TIGRFAM: peptidase S41A, C-terminal peptidase; KEGG: pmy:Pmen_4248 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF YP_004475959.1 KEGG: pmy:Pmen_4249 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004475960.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: nve:NEMVE_v1g223466 hypothetical protein YP_004475961.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: pol:Bpro_4928 type I secretion system ATPase, PrtD; PFAM: ABC transporter-like YP_004475962.1 KEGG: app:CAP2UW1_2829 type I secretion membrane fusion protein, HlyD family; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004475963.1 KEGG: ppg:PputGB1_3356 TolC family type I secretion outer membrane protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004475964.1 PFAM: methyltransferase type 11; KEGG: pnu:Pnuc_0320 methyltransferase type 11 YP_004475965.1 KEGG: reu:Reut_A0774 hypothetical protein YP_004475966.1 SMART: Tetratricopeptide repeat; KEGG: reu:Reut_A0772 hypothetical protein YP_004475967.1 KEGG: mag:amb3790 heme utilization/adhesion protein YP_004475968.1 PFAM: histidine biosynthesis; TIGRFAM: histidine biosynthesis, HisF; HAMAP: histidine biosynthesis, HisF; KEGG: ppf:Pput_0313 imidazole glycerol phosphate synthase subunit HisF YP_004475969.1 PFAM: histidine biosynthesis; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; HAMAP: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: pmy:Pmen_4253 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_004475970.1 PFAM: protein of unknown function DUF2164; KEGG: pfo:Pfl01_0325 hypothetical protein YP_004475971.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: pmy:Pmen_4255 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I, C-terminal YP_004475972.1 HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: pmy:Pmen_4256 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004475973.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfs:PFLU0325 hypothetical protein YP_004475974.1 PFAM: AsmA; KEGG: pmy:Pmen_4258 AsmA family protein YP_004475975.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: pmy:Pmen_4259 A/G-specific DNA-adenine glycosylase; SMART: HhH-GPD domain YP_004475976.1 KEGG: pmy:Pmen_4260 hypothetical protein; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX YP_004475977.1 KEGG: ptm:GSPATT00026321001 hypothetical protein YP_004475978.1 PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: 2-phosphoglycolate phosphatase, prokaryotic; KEGG: pmy:Pmen_3998 phosphoglycolate phosphatase YP_004475979.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: pmy:Pmen_3999 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004475980.1 KEGG: pfl:PFL_5633 hypothetical protein YP_004475981.1 KEGG: pfl:PFL_5634 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004475982.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; KEGG: pfl:PFL_5635 sensory box-containing sigma-54 dependent transcriptional regulator; SMART: ATPase, AAA+ type, core; PAS YP_004475983.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_4000 binding-protein-dependent transport systems inner membrane component YP_004475984.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pap:PSPA7_0749 polyamine ABC transporter permease YP_004475985.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ppg:PputGB1_0443 extracellular solute-binding protein YP_004475986.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: pap:PSPA7_0747 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; transport-associated OB, type 2 YP_004475987.1 KEGG: pag:PLES_05981 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004475988.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Extracellular solute-binding protein, family 3; PAS fold-4; PAS fold-3; KEGG: pfl:PFL_5641 sensory box histidine kinase; SMART: Extracellular solute-binding protein, family 3; PAS; PAC motif; ATPase-like, ATP-binding domain YP_004475989.1 KEGG: pmy:Pmen_4006 hypothetical protein YP_004475990.1 KEGG: pmy:Pmen_4007 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_004475991.1 PFAM: nucleotidyl transferase; KEGG: psa:PST_0731 nucleotidyltransferase YP_004475992.1 PFAM: Aminoglycoside phosphotransferase; KEGG: pmy:Pmen_4009 aminoglycoside phosphotransferase YP_004475993.1 KEGG: pmy:Pmen_4010 organic solvent tolerance protein; HAMAP: Lipopolysccharide assembly, LptD; PFAM: Organic solvent tolerance protein, C-terminal; Organic solvent tolerance-like, N-terminal YP_004475994.1 KEGG: pmy:Pmen_4011 PpiC-type peptidyl-prolyl cis-trans isomerase; HAMAP: peptidyl-prolyl isomerase SurA; PFAM: SurA N-terminal; peptidyl-prolyl cis-trans isomerase, PpiC-type YP_004475995.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: pap:PSPA7_0737 4-hydroxythreonine-4-phosphate dehydrogenase YP_004475996.1 SMART: ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: ribosomal RNA adenine dimethylase; KEGG: pmy:Pmen_4013 dimethyladenosine transferase; HAMAP: ribosomal RNA adenine dimethylase; PFAM: ribosomal RNA adenine methylase transferase YP_004475997.1 KEGG: pfl:PFL_5650 ApaG; HAMAP: Uncharacterised protein family ApaG; PFAM: ApaG domain YP_004475998.1 PFAM: Metallo-dependent phosphatase; TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: pfl:PFL_5651 diadenosine tetraphosphatase; HAMAP: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YP_004475999.1 SMART: Rhodanese-like; HAMAP: Thiosulfate sulfurtransferase glpE; KEGG: pfl:PFL_5652 thiosulfate sulfurtransferase; PFAM: Rhodanese-like YP_004476000.1 KEGG: pmy:Pmen_4017 serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA YP_004476001.1 KEGG: pmy:Pmen_4018 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229 YP_004476002.1 PFAM: Sporulation stage V, protein R; KEGG: pmy:Pmen_4019 SpoVR family protein YP_004476003.1 HAMAP: tRNA nucleotidyltransferase, proteobacteria; KEGG: pmy:Pmen_4021 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; PFAM: poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain YP_004476004.1 KEGG: avn:Avin_46940 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004476005.1 TIGRFAM: Dihydroneopterin aldolase; Dihydroneopterin aldolase subgroup; PFAM: Dihydroneopterin aldolase; KEGG: pmy:Pmen_4023 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase YP_004476006.1 TIGRFAM: glycerol-3-phosphate acyltransferase, bacteria; HAMAP: glycerol-3-phosphate acyltransferase, bacteria; KEGG: pmy:Pmen_4024 glycerol-3-phosphate acyltransferase PlsY; PFAM: glycerol-3-phosphate acyltransferase, bacteria YP_004476007.1 PFAM: peptidase M22, glycoprotease; TIGRFAM: peptidase M22, O-sialoglycoprotein peptidase; peptidase M22, glycoprotease, subgroup; HAMAP: peptidase M22, O-sialoglycoprotein peptidase; KEGG: ppw:PputW619_4812 DNA-binding/iron metalloprotein/AP endonuclease YP_004476008.1 TIGRFAM: ribosomal protein S21; HAMAP: ribosomal protein S21; KEGG: psa:PST_0714 30S ribosomal protein S21; PFAM: ribosomal protein S21 YP_004476009.1 KEGG: pmy:Pmen_4027 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain; DNA primase DnaG, DnaB-binding YP_004476010.1 KEGG: pmy:Pmen_4028 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential domain; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004476011.1 KEGG: pap:PSPA7_5244 hypothetical protein; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_004476012.1 PFAM: protein of unknown function DUF466; KEGG: avn:Avin_41000 hypothetical protein YP_004476013.1 PFAM: Carbon starvation protein CstA; KEGG: ppg:PputGB1_4635 carbon starvation protein CstA YP_004476014.1 KEGG: pmy:Pmen_0084 integral membrane sensor signal transduction histidine kinase; PFAM: Cache, type 2; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004476015.1 KEGG: pmy:Pmen_0083 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004476016.1 PFAM: Type IV pilus assembly PilZ; KEGG: psa:PST_0942 carbamoylphosphate synthase large subunit (split gene in MJ) YP_004476017.1 KEGG: pen:PSEEN2726 hypothetical protein YP_004476018.1 KEGG: pen:PSEEN2727 hypothetical protein YP_004476019.1 KEGG: sro:Sros_3885 hypothetical protein YP_004476020.1 KEGG: pfo:Pfl01_4885 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004476021.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_0755 acetyltransferase-like protein YP_004476022.1 PFAM: protein of unknown function DUF465; KEGG: avn:Avin_41080 hypothetical protein YP_004476023.1 KEGG: pmy:Pmen_0754 hypothetical protein YP_004476024.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: pag:PLES_49991 large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel YP_004476025.1 PFAM: Integral membrane protein TerC; Cystathionine beta-synthase, core; transporter-associated domain; KEGG: avn:Avin_11570 integral membrane protein, TerC family YP_004476026.1 KEGG: pmy:Pmen_0752 oxidoreductase FAD/NAD(P)-binding subunit; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain YP_004476027.1 KEGG: pfo:Pfl01_3224 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004476028.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: pag:PLES_31091 hypothetical protein YP_004476029.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hse:Hsero_0145 LysR family transcription regulator protein YP_004476030.1 KEGG: pmy:Pmen_0218 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004476031.1 HAMAP: rRNA (guanine-N2-)-methyltransferase, RsmD; KEGG: pmy:Pmen_0751 16S rRNA m(2)G 1207 methyltransferase; PFAM: methyltransferase small YP_004476032.1 KEGG: pmy:Pmen_0750 Zn-dependent protease-like protein YP_004476033.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pmy:Pmen_0749 peptidase U62, modulator of DNA gyrase YP_004476034.1 KEGG: amt:Amet_2259 hypothetical protein YP_004476035.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: psp:PSPPH_1221 cyclohexadienyl dehydratase, SMART: Extracellular solute-binding protein, family 3 YP_004476036.1 PFAM: protein of unknown function DUF2474; KEGG: pap:PSPA7_1179 hypothetical protein YP_004476037.1 KEGG: pag:PLES_10481 cyanide insensitive terminal oxidase; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II YP_004476038.1 PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: pmy:Pmen_0746 cytochrome bd ubiquinol oxidase, subunit I YP_004476039.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: pmy:Pmen_4581 TonB-dependent receptor YP_004476040.1 KEGG: pmy:Pmen_4044 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004476041.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_4045 tripartite ATP-independent periplasmic transporter DctQ YP_004476042.1 KEGG: pmy:Pmen_4046 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004476043.1 KEGG: pfl:PFL_0680 DNA-damage-inducible protein F; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004476044.1 TIGRFAM: NAD synthase; HAMAP: NH(3)-dependent NAD(+) synthetase; KEGG: pmy:Pmen_1410 NAD synthetase; PFAM: NAD/GMP synthase YP_004476045.1 TIGRFAM: Nicotinate phosphoribosyltransferase; HAMAP: Nicotinate phosphoribosyltransferase; KEGG: ppw:PputW619_2245 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004476046.1 KEGG: pag:PLES_53041 nicotinamidase YP_004476047.1 KEGG: pau:PA14_64940 hypothetical protein; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase YP_004476048.1 PFAM: NUDIX hydrolase domain; KEGG: pen:PSEEN2060 hypothetical protein YP_004476049.1 KEGG: pct:PC1_3517 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004476050.1 KEGG: pfl:PFL_2189 acyl carrier protein phosphodiesterase, HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004476051.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pct:PC1_3518 GCN5-related N-acetyltransferase YP_004476052.1 KEGG: aav:Aave_3971 hypothetical protein YP_004476053.1 PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; TIGRFAM: arginine decarboxylase; HAMAP: arginine decarboxylase; KEGG: pmy:Pmen_0727 arginine decarboxylase YP_004476054.1 KEGG: pmy:Pmen_0726 translation initiation factor 1 (eIF-1/SUI1); TIGRFAM: Archaeal/bacterial translation initiation factor SUI1; PFAM: translation initiation factor SUI1 YP_004476055.1 PFAM: NUDIX hydrolase domain; KEGG: ppu:PP_0565 NUDIX hydrolase YP_004476056.1 PFAM: Uncharacterised conserved protein UCP029693; KEGG: pag:PLES_52271 hypothetical protein YP_004476057.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: pmy:Pmen_0723 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain YP_004476058.1 KEGG: pmy:Pmen_0717 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004476059.1 HAMAP: Thiol:disulphide interchange protein DsbD; KEGG: pmy:Pmen_0716 thiol:disulfide interchange protein precursor; PFAM: Cytochrome c assembly protein, transmembrane domain YP_004476060.1 PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: pfs:PFLU0619 3-dehydroquinate dehydratase YP_004476061.1 KEGG: pag:PLES_52321 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; TIGRFAM: acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004476062.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; KEGG: pmy:Pmen_0713 acetyl-CoA carboxylase biotin carboxylase subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004476063.1 KEGG: ssa:SSA_2198 hypothetical protein YP_004476064.1 TIGRFAM: ribosomal protein L11 methyltransferase; HAMAP: ribosomal protein L11 methyltransferase; KEGG: pmy:Pmen_0712 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase, PrmA YP_004476065.1 KEGG: pmy:Pmen_0711 zinc finger-domain-containing protein; manually curated; TIGRFAM: Zinc finger/thioredoxin YP_004476066.1 KEGG: pmy:Pmen_0710 nifR3 family TIM-barrel protein; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004476067.1 PFAM: Helix-turn-helix, Fis-type; KEGG: pmy:Pmen_0709 DNA-binding protein fis YP_004476068.1 KEGG: pmy:Pmen_0708 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; methylglyoxal synthase-like domain YP_004476069.1 PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: phosphoribosylglycinamide synthetase; HAMAP: phosphoribosylglycinamide synthetase; KEGG: pmy:Pmen_0707 phosphoribosylamine--glycine ligase YP_004476070.1 KEGG: pmy:Pmen_0706 integral membrane sensor hybrid histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; 7TM-DISM receptor, extracellular domain, type 2; 7TM-DISM receptor, extracellular domain, type 1; ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain YP_004476071.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pap:PSPA7_5919 LysR family transcriptional regulator YP_004476072.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_0377 ATP/ADP translocase-like protein YP_004476073.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: pmy:Pmen_0369 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004476074.1 TIGRFAM: phosphoenolpyruvate carboxykinase, ATP-utilising; HAMAP: phosphoenolpyruvate carboxykinase, ATP-utilising; KEGG: pmy:Pmen_0368 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase, ATP-utilising YP_004476075.1 KEGG: avn:Avin_05430 HSP33-like chaperonin; HAMAP: Heat shock protein Hsp33 protein; PFAM: Heat shock protein Hsp33 protein YP_004476076.1 PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: pmy:Pmen_0366 phosphoesterase, PA-phosphatase related YP_004476077.1 KEGG: pen:PSEEN0231 heat shock protein 15, ribosome associated; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004476078.1 KEGG: pfs:PFLU0263 EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain YP_004476079.1 PFAM: protein of unknown function DUF785; KEGG: pmy:Pmen_0364 hypothetical protein YP_004476080.1 TIGRFAM: S6 modification enzyme RimK; HAMAP: ribosomal protein S6 modification protein; KEGG: pen:PSEEN0229 ribosomal protein S6 modification protein; PFAM: ATP-grasp fold, RimK-type YP_004476081.1 PFAM: peptidase S66, LD-carboxypeptidase A; KEGG: pmy:Pmen_0362 peptidase U61, LD-carboxypeptidase A YP_004476082.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; PAS fold; PAS fold-3; KEGG: pmy:Pmen_0361 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif YP_004476083.1 KEGG: pmy:Pmen_0360 osmolarity sensor protein EnvZ; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004476084.1 KEGG: pmy:Pmen_0359 osmolarity response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004476085.1 KEGG: pmy:Pmen_0358 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein, N-terminal; ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1 YP_004476086.1 KEGG: psa:PST_0277 phenylacetic acid degradation-related protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004476087.1 TIGRFAM: glutamate--cysteine ligase, monofunctional; HAMAP: glutamate--cysteine ligase; KEGG: pmy:Pmen_0356 glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase YP_004476088.1 KEGG: pmy:Pmen_0355 hypothetical protein YP_004476089.1 KEGG: ppw:PputW619_2046 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004476090.1 KEGG: pfs:PFLU3296 acyl-CoA dehydrogenase oxidoreductase; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA oxidase/dehydrogenase, central domain; acyl-CoA dehydrogenase, N-terminal YP_004476091.1 TIGRFAM: Thiolase; KEGG: pst:PSPTO_2940 thiolase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal YP_004476092.1 KEGG: psb:Psyr_2726 feruloyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase YP_004476093.1 KEGG: pfs:PFLU3299 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004476094.1 PFAM: Crotonase, core; KEGG: pst:PSPTO_2944 p-hydroxycinnamoyl CoA hydratase/lyase YP_004476095.1 KEGG: ppw:PputW619_2986 hypothetical protein YP_004476096.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfs:PFLU3303 3-hydroxyphenylpropionic transporter MhpT YP_004476097.1 PFAM: Outer membrane porin, bacterial; KEGG: pfs:PFLU3302 family S43 non-peptidase YP_004476098.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ppg:PputGB1_2166 major facilitator transporter YP_004476099.1 KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain YP_004476100.1 KEGG: pfs:PFLU3294 vanillate O-demethylase oxidoreductase; PFAM: ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding YP_004476101.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: psb:Psyr_4220 GCN5-related N-acetyltransferase YP_004476102.1 KEGG: pap:PSPA7_5629 transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004476103.1 KEGG: pmy:Pmen_0830 hypothetical protein YP_004476104.1 KEGG: pap:PSPA7_0334 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004476105.1 PFAM: Monooxygenase, FAD-binding; manually curated; KEGG: psp:PSPPH_3432 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase YP_004476106.1 PFAM: protein of unknown function DUF411; KEGG: pmy:Pmen_0829 hypothetical protein YP_004476107.1 PFAM: Uncharacterised protein family, zinc metallopeptidase KEGG: pmy:Pmen_0828 protein of unknown function, zinc metallopeptidase YP_004476108.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: pmy:Pmen_4289 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004476109.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase, long form; KEGG: psa:PST_0083 glucose 1 PH thymidilate transferase; PFAM: nucleotidyl transferase YP_004476110.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: nve:NEMVE_v1g231483 hypothetical protein; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related YP_004476111.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pfs:PFLU0288 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004476112.1 KEGG: pmy:Pmen_4293 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004476113.1 KEGG: pmy:Pmen_4294 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004476114.1 KEGG: psa:PST_0078 C4 dicarboxylate binding protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_004476115.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pau:PA14_68280 dicarboxylate transporter YP_004476116.1 KEGG: psa:PST_0076 C4-dicarboxylate transporter; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004476117.1 KEGG: pmy:Pmen_0395 beta-ketoacyl synthase; PFAM: beta-ketoacyl synthase, C-terminal; beta-ketoacyl synthase, N-terminal; SMART: polyketide synthase, beta-ketoacyl synthase domain YP_004476118.1 KEGG: pmy:Pmen_0394 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; PFAM: Inositol monophosphatase YP_004476119.1 PFAM: NUDIX hydrolase domain; KEGG: psa:PST_0318 ADP-ribose diphosphatase NudE YP_004476120.1 KEGG: pfo:Pfl01_0283 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004476121.1 TIGRFAM: Allophanate hydrolase; KEGG: pmy:Pmen_0704 allophanate hydrolase; PFAM: Amidase YP_004476122.1 SMART: Allophanate hydrolase subunit 2; Biotin carboxylase, C-terminal; Allophanate hydrolase subunit 1; TIGRFAM: Urea carboxylase; Allophanate hydrolase subunit 2; KEGG: pmy:Pmen_0703 urea amidolyase; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Allophanate hydrolase subunit 1; Biotin/lipoyl attachment YP_004476123.1 KEGG: pmy:Pmen_0702 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004476124.1 KEGG: pmy:Pmen_0701 branched-chain amino acid ABC transporter systems periplasmic component-like protein; TIGRFAM: ABC transporter urea, substrate-binding, UrtA; PFAM: Extracellular ligand-binding receptor YP_004476125.1 KEGG: pmy:Pmen_0700 inner-membrane translocator; TIGRFAM: ABC transporter urea, permease, UrtB; PFAM: ABC transporter permease YP_004476126.1 KEGG: pmy:Pmen_0699 inner-membrane translocator; TIGRFAM: ABC transporter urea, permease, UrtC; PFAM: ABC transporter permease YP_004476127.1 TIGRFAM: ABC transporter urea, ATP-binding protein, UrtD; KEGG: psp:PSPPH_4472 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004476128.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter urea, ATP-binding protein, UrtE; KEGG: pmy:Pmen_0697 ABC transporter related; PFAM: ABC transporter-like YP_004476129.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_4121 short-chain dehydrogenase; SMART: polyketide synthase/Fatty acid synthase, KR YP_004476130.1 KEGG: pfl:PFL_2312 methyl-accepting chemotaxis transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache; SMART: Chemotaxis methyl-accepting receptor, signalling YP_004476131.1 KEGG: psb:Psyr_4433 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004476132.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pen:PSEEN4894 acetyl transferase YP_004476133.1 KEGG: pag:PLES_52561 hypothetical protein YP_004476134.1 KEGG: pmy:Pmen_0689 2,3-dimethylmalate lyase; HAMAP: Oxaloacetate decarboxylase YP_004476135.1 KEGG: pmy:Pmen_0687 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004476136.1 KEGG: pmy:Pmen_0685 hypothetical protein YP_004476137.1 PFAM: SNARE associated Golgi protein; KEGG: psa:PST_1913 hypothetical protein YP_004476138.1 KEGG: pmy:Pmen_0683 integral membrane protein-like protein YP_004476139.1 KEGG: pmy:Pmen_0682 molecular chaperone-like protein YP_004476140.1 HAMAP: Uncharacterised protein family UPF0313; PFAM: Radical SAM N-terminal; Radical SAM; KEGG: pmy:Pmen_0652 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB YP_004476141.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; 7TM-DISM receptor, extracellular domain, type 1; 7TM-DISM receptor, extracellular domain, type 2; KEGG: pmy:Pmen_0651 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004476142.1 TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: pmy:Pmen_0649 replicative DNA helicase; SMART: ATPase, AAA+ type, core YP_004476143.1 TIGRFAM: ribosomal protein L9, bacteria/chloroplast; HAMAP: ribosomal protein L9, bacteria/chloroplast; KEGG: pmy:Pmen_0648 50S ribosomal protein L9; PFAM: ribosomal protein L9, C-terminal; ribosomal protein L9, N-terminal YP_004476144.1 KEGG: pmy:Pmen_0647 hypothetical protein YP_004476145.1 TIGRFAM: ribosomal protein S18; HAMAP: ribosomal protein S18; KEGG: avn:Avin_07650 30S ribosomal protein S18; PFAM: ribosomal protein S18 YP_004476146.1 TIGRFAM: ribosomal protein S6; HAMAP: ribosomal protein S6, plastid/chloroplast; KEGG: pmy:Pmen_0645 30S ribosomal protein S6; PFAM: ribosomal protein S6 YP_004476147.1 TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: pfl:PFL_0578 RNA methyltransferase; SMART: RNA 2-O ribose methyltransferase, substrate binding YP_004476148.1 TIGRFAM: ribonuclease R, bacterial; ribonuclease II/ribonuclease R, bacteria; PFAM: ribonuclease II/R; ribonuclease B, N-terminal OB domain; ribonuclease R winged-helix domain; ribosomal protein S1, RNA-binding domain; KEGG: pmy:Pmen_0643 RNAse R; SMART: ribonuclease II/R; Cold shock protein; RNA-binding domain, S1 YP_004476149.1 KEGG: pfs:PFLU0526 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004476150.1 KEGG: pfl:PFL_0571 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; HAMAP: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_004476151.1 TIGRFAM: histidyl-tRNA synthetase, class IIa, HAMAP: ATP phosphoribosyltransferase regulatory subunit; KEGG: pmy:Pmen_0640 ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YP_004476152.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: pmy:Pmen_0638 HflC protein; SMART: Band 7 protein YP_004476153.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: pmy:Pmen_0637 HflK protein; SMART: Band 7 protein YP_004476154.1 KEGG: psp:PSPPH_0566 GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004476155.1 TIGRFAM: Host factor Hfq; HAMAP: Host factor Hfq; KEGG: pmy:Pmen_0635 RNA-binding protein Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain YP_004476156.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: pfl:PFL_0565 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004476157.1 SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: pmy:Pmen_0633 DNA mismatch repair protein; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain YP_004476158.1 KEGG: pmy:Pmen_0632 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; peptidoglycan-binding lysin domain; SMART: Cell wall hydrolase/autolysin, catalytic; peptidoglycan-binding Lysin subgroup YP_004476159.1 KEGG: pmy:Pmen_0631 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004476160.1 KEGG: pmy:Pmen_0630 carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related YP_004476161.1 KEGG: pmy:Pmen_0629 iron-sulfur cluster binding protein; TIGRFAM: 4Fe-4S cluster binding; PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain YP_004476162.1 HAMAP: oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: pmy:Pmen_0628 oligoribonuclease; SMART: Exonuclease YP_004476163.1 KEGG: pmy:Pmen_0627 hypothetical protein YP_004476164.1 TIGRFAM: ribosome biogenesis GTPase RsgA, HAMAP: ribosome biogenesis GTPase RsgA, KEGG: pmy:Pmen_0626 ribosome-associated GTPase; PFAM: ribosome biogenesis GTPase RsgA YP_004476165.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: pmy:Pmen_0625 flagellar motor protein MotB YP_004476166.1 TIGRFAM: Flagellar motor stator, MotA; KEGG: pmy:Pmen_0624 flagellar motor protein MotA YP_004476167.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pmy:Pmen_0623 HDOD YP_004476168.1 KEGG: pmy:Pmen_0622 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004476169.1 TIGRFAM: phosphatidylserine decarboxylase; HAMAP: phosphatidylserine decarboxylase; KEGG: pmy:Pmen_0621 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related YP_004476170.1 KEGG: pmy:Pmen_0620 hypothetical protein YP_004476171.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; PAS fold; KEGG: pmy:Pmen_0619 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; Signal transduction response regulator, receiver domain YP_004476172.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: pfs:PFLU0504 phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; Amino acid-binding ACT YP_004476173.1 PFAM: HAMP linker domain; KEGG: pmy:Pmen_0617 hypothetical protein YP_004476174.1 KEGG: pfl:PFL_5933 molybdenum-pterin-binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: transport-associated OB, type 1 YP_004476175.1 PFAM: ABC transporter-like; KEGG: pau:PA14_19580 aliphatic sulfonates transport ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004476176.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: avn:Avin_30490 aliphatic sulfonate ABC transporter permease YP_004476177.1 PFAM: Luciferase-like, subgroup; TIGRFAM: Alkanesulphonate monooxygenase, FMN-dependent; HAMAP: Alkanesulfonate monooxygenase; KEGG: pag:PLES_16161 alkanesulfonate monooxygenase YP_004476178.1 KEGG: pmy:Pmen_4323 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; TIGRFAM: ABC transporter substrate-binding protein, aliphatic sulphonates; SMART: Extracellular solute-binding protein, family 3 YP_004476179.1 TIGRFAM: NADPH-dependent FMN reductase, SsuE; KEGG: ppw:PputW619_4976 NAD(P)H-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase YP_004476180.1 KEGG: psa:PST_0214 antioxidant protein LsfA; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal YP_004476181.1 KEGG: psa:PST_3480 acetyltransferase YP_004476182.1 KEGG: pst:PSPTO_2621 DNA polymerase II; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain; SMART: DNA-directed DNA polymerase, family B YP_004476183.1 PFAM: methyltransferase type 11; KEGG: pmy:Pmen_4338 methyltransferase type 11 YP_004476184.1 KEGG: pfo:Pfl01_1192 K+ potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter YP_004476185.1 KEGG: pfl:PFL_4294 sensor histidine kinase KdpD; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004476186.1 KEGG: pst:PSPTO_2246 KDP operon transcriptional regulatory protein KdpE; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004476187.1 TIGRFAM: transcriptional repressor BetI; HAMAP: HTH-type transcriptional regulator betI; KEGG: pmy:Pmen_0483 transcriptional regulator BetI; PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004476188.1 PFAM: Aldehyde dehydrogenase domain; TIGRFAM: betaine aldehyde dehydrogenase; HAMAP: betaine aldehyde dehydrogenase; KEGG: pmy:Pmen_0482 betaine aldehyde dehydrogenase YP_004476189.1 PFAM: glucose-methanol-choline oxidoreductase, N-terminal; glucose-methanol-choline oxidoreductase, C-terminal; TIGRFAM: Choline dehydrogenase; HAMAP: Choline dehydrogenase; KEGG: pmy:Pmen_0481 choline dehydrogenase YP_004476190.1 KEGG: pmy:Pmen_0480 major facilitator transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004476191.1 KEGG: psa:PST_3905 ATP-dependent RNA helicase DbpA; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004476192.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: pmy:Pmen_0478 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain YP_004476193.1 KEGG: pmy:Pmen_0477 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004476194.1 KEGG: avn:Avin_28030 HI0933-like protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YP_004476195.1 KEGG: tmz:Tmz1t_0528 serine/threonine transporter SstT; HAMAP: serine/threonine transporter SstT; PFAM: Sodium:dicarboxylate symporter YP_004476196.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: pmy:Pmen_4547 L-serine ammonia-lyase; PFAM: serine dehydratase-like, alpha subunit; serine dehydratase beta chain YP_004476197.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_4546 LysR family transcriptional regulator YP_004476198.1 PFAM: protein of unknown function DUF330; KEGG: pfl:PFL_0549 hypothetical protein YP_004476199.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: pmy:Pmen_0601 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004476200.1 KEGG: pmy:Pmen_0602 aspartyl protease-like protein YP_004476201.1 KEGG: psa:PST_3809 hypothetical protein YP_004476202.1 SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-negative; KEGG: pmy:Pmen_0604 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004476203.1 PFAM: Uncharacterised protein family UPF0227/Esterase YqiA; KEGG: pmy:Pmen_0605 hypothetical protein YP_004476204.1 PFAM: Calcineurin-like phosphoesterase C-terminal; Metallo-dependent phosphatase; KEGG: pmy:Pmen_0606 calcineurin phosphoesterase C-terminal domain-containing protein YP_004476205.1 PFAM: protein of unknown function DUF1249; KEGG: pag:PLES_53561 hypothetical protein YP_004476206.1 KEGG: pag:PLES_53571 adenosine diphosphate sugar pyrophosphatase; TIGRFAM: nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain YP_004476207.1 KEGG: avn:Avin_44590 hypothetical protein YP_004476208.1 TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: psa:PST_3816 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_004476209.1 KEGG: pmy:Pmen_0610 TolC family type I secretion outer membrane protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004476210.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal; glycosyl transferase, group 1; KEGG: psa:PST_3818 3-deoxy-D-manno-octulosonic-acid transferase YP_004476211.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pap:PSPA7_5724 transcriptional regulator YP_004476212.1 PFAM: Small multidrug resistance protein; KEGG: pmy:Pmen_0613 small multidrug resistance protein YP_004476213.1 PFAM: FAD dependent oxidoreductase; KEGG: pmy:Pmen_0614 FAD dependent oxidoreductase YP_004476214.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: pen:PSEEN4984 aldo/keto reductase oxidoreductase YP_004476215.1 KEGG: pmy:Pmen_0616 hypothetical protein YP_004476216.1 TIGRFAM: RfaE bifunctional protein, domain I; RfaE bifunctional protein, domain II; Cytidyltransferase-related; HAMAP: Bifunctional protein HldE; KEGG: pmy:Pmen_0597 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; PFAM: Carbohydrate/purine kinase; Cytidylyltransferase YP_004476217.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: pmy:Pmen_0596 LmbE family protein YP_004476218.1 PFAM: Mig-14; KEGG: pmy:Pmen_0595 Mig-14 family protein YP_004476219.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter lipid A export, MsbA; KEGG: pmy:Pmen_0594 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter-like; ABC transporter transmembrane domain YP_004476220.1 PFAM: Aminoglycoside phosphotransferase; KEGG: psa:PST_3831 toluene tolerance protein YP_004476221.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bpy:Bphyt_3836 DegT/DnrJ/EryC1/StrS aminotransferase YP_004476222.1 KEGG: shw:Sputw3181_1469 hexapaptide repeat-containing transferase YP_004476223.1 PFAM: glycosyl transferase, family 2; KEGG: fjo:Fjoh_0318 glycosyl transferase YP_004476224.1 PFAM: acyltransferase 3; KEGG: par:Psyc_0638 acyltransferase YP_004476225.1 KEGG: rop:ROP_25900 hypothetical protein YP_004476226.1 KEGG: abn:AB57_0097 hypothetical protein YP_004476227.1 KEGG: azo:azo3575 pyruvyltransferase YP_004476228.1 KEGG: pag:PLES_53901 hypothetical protein YP_004476229.1 KEGG: app:CAP2UW1_3097 glycosyl transferase 2; manually curated; PFAM: glycosyl transferase, family 2 YP_004476230.1 PFAM: Carbamoyltransferase; KEGG: ppw:PputW619_0524 carbamoyltransferase YP_004476231.1 KEGG: pmy:Pmen_0585 hypothetical protein YP_004476232.1 PFAM: Lipopolysaccharide kinase; KEGG: pmy:Pmen_0584 lipopolysaccharide kinase YP_004476233.1 PFAM: Lipopolysaccharide kinase; KEGG: pmy:Pmen_0583 lipopolysaccharide kinase YP_004476234.1 PFAM: Lipopolysaccharide kinase; KEGG: pmy:Pmen_0582 lipopolysaccharide kinase YP_004476235.1 PFAM: glycosyl transferase, group 1; KEGG: pap:PSPA7_5745 UDP-glucose:(heptosyl) LPS alpha 1,3-glucosyltransferase WaaG YP_004476236.1 KEGG: pmy:Pmen_0580 lipopolysaccharide heptosyltransferase I; TIGRFAM: Lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9 YP_004476237.1 KEGG: pfl:PFL_0511 ADP-heptose--LPS heptosyltransferase II; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9 YP_004476238.1 HAMAP: glutamate-ammonia-ligase adenylyltransferase; KEGG: pmy:Pmen_0577 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/glutamine-synthetase adenylyltransferase YP_004476239.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: psa:PST_3852 pyruvate dehydrogenase subunit E1; PFAM: transketolase, N-terminal YP_004476240.1 TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex; KEGG: pfl:PFL_0508 dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004476241.1 SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; PAS; PAC motif; manually curated; KEGG: pmy:Pmen_0573 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF; PAS fold-4 YP_004476242.1 PFAM: peptide methionine sulphoxide reductase MsrA; TIGRFAM: peptide methionine sulphoxide reductase MsrA; HAMAP: peptide methionine sulphoxide reductase MsrA; KEGG: psa:PST_3856 peptide methionine sulfoxide reductase YP_004476243.1 KEGG: pmy:Pmen_0571 hypothetical protein YP_004476244.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: pmy:Pmen_0570 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain YP_004476245.1 PFAM: protein of unknown function DUF519; KEGG: avn:Avin_45040 hypothetical protein YP_004476246.1 KEGG: pmy:Pmen_0561 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA oxidase/dehydrogenase, central domain; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, type 1 YP_004476247.1 PFAM: polyphosphate kinase; TIGRFAM: polyphosphate kinase; HAMAP: polyphosphate kinase; KEGG: pmy:Pmen_0300 polyphosphate kinase YP_004476248.1 KEGG: psp:PSPPH_0279 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_004476249.1 KEGG: pap:PSPA7_5989 hypothetical protein YP_004476250.1 PFAM: ThiJ/PfpI; KEGG: pfl:PFL_5988 isoprenoid biosynthesis protein with amidotransferase-like domain YP_004476251.1 KEGG: pmy:Pmen_0294 hypothetical protein; HAMAP: protein of unknown function DUF188; PFAM: protein of unknown function DUF188 YP_004476252.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pmy:Pmen_0291 lysine exporter protein LysE/YggA YP_004476253.1 PFAM: Mechanosensitive ion channel MscS; KEGG: pmy:Pmen_0290 hypothetical protein YP_004476254.1 KEGG: ppf:Pput_0217 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004476255.1 KEGG: psa:PST_0531 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02444; PFAM: Conserved hypothetical protein CHP02444 YP_004476256.1 TIGRFAM: polyhydroxyalkanoic acid system protein; KEGG: pmy:Pmen_0524 polyhydroxyalkanoic acid system protein YP_004476257.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: pap:PSPA7_5802 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004476258.1 PFAM: SCP2 sterol-binding domain; KEGG: pmy:Pmen_0522 hypothetical protein YP_004476259.1 TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; HAMAP: Probable ubiquinone biosynthesis protein UbiB; KEGG: pen:PSEEN5075 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; PFAM: ABC-1 YP_004476260.1 HAMAP: phosphoribosyl-AMP cyclohydrolase; KEGG: pmy:Pmen_0520 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase YP_004476261.1 TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: pmy:Pmen_0519 phosphoribosyl-ATP pyrophosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase-like YP_004476262.1 TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: pfl:PFL_0422 twin arginine translocase A; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 YP_004476263.1 TIGRFAM: Twin-arginine translocation protein TatB; HAMAP: Twin-arginine translocation protein TatB; KEGG: ppw:PputW619_0448 sec-independent translocase; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 YP_004476264.1 KEGG: pst:PSPTO_5157 sec-independent protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004476265.1 KEGG: psa:PST_0332 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: ribosomal RNA small subunit methyltransferase E YP_004476267.1 KEGG: pmy:Pmen_4125 acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004476268.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mno:Mnod_6552 glyoxalase/bleomycin resistance protein/dioxygenase YP_004476269.1 TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; KEGG: pfl:PFL_5723 glutathione-independent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal YP_004476270.1 TIGRFAM: formyltetrahydrofolate deformylase; KEGG: pap:PSPA7_6208 formyltetrahydrofolate deformylase; PFAM: formyl transferase, N-terminal YP_004476271.1 KEGG: pmy:Pmen_4128 sarcosine oxidase gamma subunit family protein; TIGRFAM: Sarcosine oxidase, gamma subunit, heterotetrameric; PFAM: Sarcosine oxidase, gamma subunit YP_004476272.1 KEGG: pmy:Pmen_4129 sarcosine oxidase alpha subunit family protein; TIGRFAM: Sarcosine oxidase, alpha subunit, heterotetrameric; PFAM: glycine cleavage T-protein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004476273.1 KEGG: pmy:Pmen_4130 sarcosine oxidase delta subunit family protein; TIGRFAM: Sarcosine oxidase, delta subunit, heterotetrameric; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric YP_004476274.1 KEGG: pmy:Pmen_4131 sarcosine oxidase beta subunit family protein; TIGRFAM: Sarcosine oxidase, beta subunit, heterotetrameric; PFAM: FAD dependent oxidoreductase YP_004476275.1 KEGG: ppg:PputGB1_0345 serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase YP_004476276.1 KEGG: avn:Avin_05830 TraX domain-containing membrane protein YP_004476277.1 KEGG: pmy:Pmen_4133 hypothetical protein YP_004476278.1 KEGG: pmy:Pmen_4134 L-threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004476279.1 KEGG: pmy:Pmen_4136 oxidoreductase FAD-binding subunit; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; ferredoxin YP_004476280.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ppu:PP_0315 Rieske (2Fe-2S) domain protein YP_004476281.1 KEGG: pmy:Pmen_0502 thioesterase-like protein YP_004476282.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; KEGG: pau:PA14_71140 3-hydroxybutyryl-CoA dehydrogenase YP_004476283.1 PFAM: protein of unknown function DUF849, prokaryotic; KEGG: pag:PLES_57831 hypothetical protein YP_004476284.1 KEGG: pmy:Pmen_0499 glycine/betaine ABC transporter substrate-binding protein; TIGRFAM: ABC transporter choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain YP_004476285.1 KEGG: pmy:Pmen_0498 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004476286.1 KEGG: pfo:Pfl01_5225 peptidase M19, renal dipeptidase; PFAM: peptidase M19, renal dipeptidase YP_004476287.1 KEGG: ppw:PputW619_4898 hypothetical protein YP_004476288.1 KEGG: ppg:PputGB1_0333 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004476289.1 PFAM: Cysteine-rich domain; KEGG: pmy:Pmen_0494 hypothetical protein YP_004476290.1 KEGG: pmy:Pmen_0493 electron transfer flavoprotein, alpha subunit; PFAM: electron transfer flavoprotein, alpha subunit, C-terminal; electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004476291.1 KEGG: pap:PSPA7_6188 hypothetical protein; PFAM: electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004476292.1 KEGG: pmy:Pmen_0491 hypothetical protein YP_004476293.1 KEGG: pmy:Pmen_0490 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004476294.1 SMART: ATPase, AAA+ type, core; TIGRFAM: glycine betaine/L-proline transport ATP-binding subunit; KEGG: pmy:Pmen_0487 glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core YP_004476295.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0486 binding-protein-dependent transport systems inner membrane component YP_004476296.1 KEGG: pmy:Pmen_0485 glycine/betaine ABC transporter substrate-binding protein; TIGRFAM: ABC transporter choline, substrate-binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding domain YP_004476297.1 PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: pmy:Pmen_0484 glycine/betaine ABC transporter substrate-binding protein YP_004476298.1 KEGG: ppw:PputW619_3197 molybdenum ABC transporter periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter substrate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004476299.1 KEGG: pmy:Pmen_4340 molybdate ABC transporter inner membrane subunit; TIGRFAM: Molybdate ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004476300.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter ATP-binding protein; KEGG: pmy:Pmen_4341 molybdate ABC transporter ATPase subunit; PFAM: ABC transporter-like; transport-associated OB, type 1 YP_004476301.1 KEGG: pfl:PFL_0229 sigma-54-binding protein; PFAM: RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core YP_004476302.1 PFAM: protein of unknown function DUF1234; KEGG: pmy:Pmen_4343 hypothetical protein YP_004476303.1 PFAM: protein of unknown function DUF2292; KEGG: pmy:Pmen_4344 hypothetical protein YP_004476304.1 KEGG: pmy:Pmen_4345 sulfate ABC transporter periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004476305.1 KEGG: pct:PC1_3093 sulfate ABC transporter inner membrane subunit CysT; TIGRFAM: Sulphate ABC transporter permease CysT; Sulphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004476306.1 KEGG: pwa:Pecwa_1185 sulfate ABC transporter inner membrane subunit CysW; TIGRFAM: Sulphate ABC transporter permease CysW; Sulphate ABC transporter permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004476307.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate ABC transporter permease 1; KEGG: pmy:Pmen_4348 sulfate ABC transporter ATPase; PFAM: ABC transporter-like YP_004476308.1 KEGG: pmy:Pmen_4352 hypothetical protein YP_004476309.1 KEGG: pmy:Pmen_4353 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004476310.1 KEGG: pfo:Pfl01_4633 hypothetical protein YP_004476311.1 KEGG: pmy:Pmen_4209 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain YP_004476312.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: avn:Avin_48120 glycerophosphoryl diester phosphodiesterase YP_004476313.1 KEGG: ppg:PputGB1_5185 hypothetical protein YP_004476314.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pmy:Pmen_4212 GTP-binding protein, HSR1-related YP_004476315.1 PFAM: Cupin 2, conserved barrel; KEGG: tau:Tola_1295 cupin YP_004476316.1 PFAM: Drug/metabolite transporter; KEGG: psa:PST_4021 DMT family permease YP_004476317.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psa:PST_4022 transcriptional regulator YP_004476318.1 KEGG: saz:Sama_1003 hypothetical protein YP_004476319.1 PFAM: Thymidylate synthase; TIGRFAM: Thymidylate synthase; HAMAP: Thymidylate synthase; KEGG: pmy:Pmen_4213 thymidylate synthase YP_004476320.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: pag:PLES_03381 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004476321.1 PFAM: protein of unknown function DUF81; KEGG: pfs:PFLU5817 hypothetical protein YP_004476322.1 KEGG: cps:CPS_0198 hypothetical protein YP_004476323.1 PFAM: protein of unknown function DUF833; KEGG: pmy:Pmen_4216 hypothetical protein YP_004476324.1 SMART: GAF; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; KEGG: pmy:Pmen_4217 phosphoenolpyruvate-protein phosphotransferase PtsP; PFAM: PEP-utilising enzyme; phosphotransferase system, PEP-utilising enzyme, N-terminal; GAF; PEP-utilising enzyme, mobile domain YP_004476325.1 KEGG: pmy:Pmen_4218 dinucleoside polyphosphate hydrolase; HAMAP: RNA pyrophosphohydrolase RppH; PFAM: NUDIX hydrolase domain YP_004476326.1 KEGG: psp:PSPPH_4876 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase YP_004476327.1 PFAM: Calcium/calmodulin-dependent protein kinase II, association-domain; KEGG: pfl:PFL_3821 hypothetical protein YP_004476328.1 KEGG: psb:Psyr_1941 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; GAF; SMART: ATPase-like, ATP-binding domain YP_004476329.1 KEGG: pfl:PFL_3823 LuxR family DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004476330.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; CHASE3; HAMP linker domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; KEGG: pfl:PFL_3824 sensory box histidine kinase/response regulator; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain YP_004476331.1 KEGG: pfl:PFL_3825 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004476332.1 PFAM: protein of unknown function DUF2269, transmembrane; KEGG: pmy:Pmen_4220 integral membrane protein-like protein YP_004476333.1 KEGG: pmy:Pmen_4221 threonine dehydratase; TIGRFAM: threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; threonine dehydratase, C-terminal YP_004476334.1 PFAM: ribose 5-phosphate isomerase, type A; TIGRFAM: ribose 5-phosphate isomerase, type A; HAMAP: ribose-5-phosphate isomerase, type A, subgroup; KEGG: psp:PSPPH_4880 ribose-5-phosphate isomerase A YP_004476335.1 PFAM: SdiA-regulated; KEGG: pap:PSPA7_0418 hypothetical protein YP_004476336.1 PFAM: protein of unknown function DUF388, OB-fold; KEGG: pmy:Pmen_4228 hypothetical protein YP_004476337.1 KEGG: psa:PST_0400 fumarylacetoacetate hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004476338.1 KEGG: ppf:Pput_5061 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004476339.1 KEGG: pmy:Pmen_4232 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT YP_004476340.1 KEGG: pfs:PFLU5834 hypothetical protein; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit YP_004476341.1 KEGG: pfs:PFLU5835 hypothetical protein YP_004476342.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: pmy:Pmen_4237 lysophospholipase-like protein YP_004476343.1 KEGG: pag:PLES_03031 hypothetical protein YP_004476344.1 PFAM: peptidase S45, penicillin amidase; KEGG: pmy:Pmen_4240 peptidase S45, penicillin amidase YP_004476345.1 TIGRFAM: ribosomal protein L33; HAMAP: ribosomal protein L33; KEGG: pen:PSEEN5426 50S ribosomal protein L33; PFAM: ribosomal protein L33 YP_004476346.1 TIGRFAM: ribosomal protein L28; HAMAP: ribosomal protein L28; KEGG: ppw:PputW619_0188 50S ribosomal protein L28; PFAM: ribosomal protein L28 YP_004476347.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pfl:PFL_6050 solute-binding family 5 protein YP_004476348.1 KEGG: vap:Vapar_5264 hypothetical protein YP_004476349.1 KEGG: pmy:Pmen_4376 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 YP_004476350.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: pmy:Pmen_4377 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004476351.1 PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase; HAMAP: DeoxyUTP pyrophosphatase; KEGG: pfs:PFLU5984 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_004476352.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: pmy:Pmen_4379 phosphomannomutase YP_004476353.1 TIGRFAM: acetylglutamate kinase; KEGG: ppw:PputW619_0182 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004476354.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: pmy:Pmen_0085 TRAP dicarboxylate transporter-DctP subunit YP_004476355.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_0086 tripartite ATP-independent periplasmic transporter DctQ YP_004476356.1 KEGG: pmy:Pmen_0087 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004476357.1 PFAM: Aldose 1-epimerase; KEGG: pmy:Pmen_0088 aldose 1-epimerase YP_004476358.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: pmy:Pmen_0155 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related YP_004476359.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: pmy:Pmen_0154 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain YP_004476360.1 KEGG: pmy:Pmen_0153 hypothetical protein YP_004476361.1 TIGRFAM: Homoserine kinase ThrB; KEGG: pmy:Pmen_0152 homoserine kinase; PFAM: Aminoglycoside phosphotransferase YP_004476362.1 PFAM: SNARE associated Golgi protein; KEGG: ote:Oter_1776 SNARE associated Golgi protein YP_004476363.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: pmy:Pmen_4495 periplasmic solute binding protein YP_004476364.1 KEGG: pmy:Pmen_4496 ferric uptake regulator family protein YP_004476365.1 PFAM: ABC transporter-like; KEGG: pfs:PFLU0074 high-affinity zinc ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004476366.1 PFAM: ABC-3; KEGG: pmy:Pmen_4498 ABC transporter YP_004476367.1 KEGG: pmy:Pmen_4502 hypothetical protein YP_004476368.1 PFAM: ABC transporter-like; NIL domain; KEGG: pmy:Pmen_4503 DL-methionine transporter ATP-binding subunit; SMART: NIL domain; ATPase, AAA+ type, core YP_004476369.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_4504 binding-protein-dependent transport systems inner membrane component YP_004476370.1 KEGG: pfo:Pfl01_0067 NlpA lipoprotein; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004476371.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: oan:Oant_0878 glutathione-dependent formaldehyde-activating GFA YP_004476372.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ebi:EbC_30560 LysR family regulatory protein YP_004476373.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psa:PST_4154 ring-cleaving dioxygenase YP_004476374.1 PFAM: Copper chaperone SCO1/SenC; KEGG: pmy:Pmen_0151 electron transport protein SCO1/SenC YP_004476375.1 PFAM: Sulphate transporter; KEGG: pap:PSPA7_0178 sulfate transporter YP_004476376.1 PFAM: Carbonic anhydrase; KEGG: pae:PA0102 probable carbonic anhydrase; SMART: Carbonic anhydrase YP_004476377.1 HAMAP: phosphoglucose isomerase (PGI); KEGG: pfo:Pfl01_4813 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_004476378.1 KEGG: pmy:Pmen_4474 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase YP_004476379.1 KEGG: pmy:Pmen_4473 xylulokinase; TIGRFAM: Xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004476380.1 KEGG: pmy:Pmen_4472 fructuronate reductase; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal YP_004476381.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: pmy:Pmen_4471 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004476382.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1991 mannitol ABC transporter permease YP_004476383.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_4469 binding-protein-dependent transport systems inner membrane component YP_004476384.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pmy:Pmen_4468 extracellular solute-binding protein YP_004476385.1 KEGG: pag:PLES_29661 transcriptional regulator MtlR; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004476386.1 PFAM: Carbonic anhydrase; KEGG: psa:PST_0191 carbonic anhydrase; SMART: Carbonic anhydrase YP_004476387.1 KEGG: pmy:Pmen_4466 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004476388.1 KEGG: hse:Hsero_3757 transmembrane dehydrogenase small subunit oxidoreductase YP_004476389.1 PFAM: FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase, N-terminal; KEGG: hse:Hsero_3758 choline dehydrogenase YP_004476390.1 KEGG: hse:Hsero_3759 gluconate 2-dehydrogenase; PFAM: Cytochrome c, class I YP_004476391.1 KEGG: pfl:PFL_0236 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004476392.1 KEGG: pfl:PFL_0237 RND efflux transporter; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004476393.1 PFAM: Acriflavin resistance protein; KEGG: pfs:PFLU0234 transporter-like membrane protein YP_004476394.1 KEGG: psb:Psyr_2735 helix-turn-helix, fis-type; PFAM: RNA polymerase sigma factor 54, interaction; Activator of aromatic catabolism; 4-vinyl reductase, 4VR; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004476395.1 KEGG: pfs:PFLU3306 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004476396.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pfs:PFLU3305 3-alpha-hydroxysteroid dehydrogenase YP_004476397.1 KEGG: psp:PSPPH_2429 hypothetical protein YP_004476398.1 PFAM: Bile acid:sodium symporter; KEGG: pfl:PFL_3827 bile acid/Na+ symporter family protein YP_004476399.1 KEGG: pfo:Pfl01_3256 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004476400.1 PFAM: protein of unknown function DUF1835; KEGG: psa:PST_4157 hypothetical protein YP_004476401.1 KEGG: pmy:Pmen_4463 hypothetical protein YP_004476402.1 KEGG: gob:Gobs_2401 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004476403.1 KEGG: pmy:Pmen_1213 hypothetical protein YP_004476404.1 KEGG: pmy:Pmen_1212 hypothetical protein YP_004476405.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pmy:Pmen_1211 hypothetical protein YP_004476406.1 KEGG: pmy:Pmen_4462 nucleic acid binding protein; TIGRFAM: Conserved hypothetical protein CHP02443; PFAM: Conserved hypothetical protein CHP02443 YP_004476407.1 KEGG: pmy:Pmen_4461 oligopeptidase A; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F YP_004476408.1 KEGG: ppw:PputW619_0113 transferase YP_004476409.1 TIGRFAM: Conserved hypothetical protein CHP02293; KEGG: psb:Psyr_2752 hypothetical protein YP_004476410.1 KEGG: neu:NE2107 hypothetical protein; PFAM: RES; SMART: RES YP_004476411.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_4459 GCN5-related N-acetyltransferase YP_004476412.1 KEGG: pfl:PFL_2333 N-methyltryptophan oxidase; PFAM: FAD dependent oxidoreductase YP_004476413.1 KEGG: pfl:PFL_3801 HD domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain YP_004476414.1 KEGG: pmy:Pmen_2332 rhs element Vgr protein; TIGRFAM: Rhs element Vgr protein, subgroup; Rhs element Vgr protein; PFAM: Gp5, C-terminal YP_004476415.1 KEGG: pag:PLES_00971 hypothetical protein YP_004476416.1 PFAM: protein of unknown function DUF2169; KEGG: pau:PA14_01180 hypothetical protein YP_004476417.1 KEGG: pmy:Pmen_2335 3-oxoacyl-(acyl carrier protein) synthase YP_004476418.1 KEGG: pmy:Pmen_2336 hypothetical protein YP_004476419.1 KEGG: pmy:Pmen_2337 hypothetical protein YP_004476420.1 TIGRFAM: Conserved hypothetical protein CHP02270; KEGG: pmy:Pmen_2338 hypothetical protein YP_004476422.1 KEGG: azo:azo3904 hypothetical protein YP_004476423.1 PFAM: Lipase, class 3; KEGG: azo:azo3905 lipase YP_004476424.1 KEGG: psp:PSPPH_5127 hypothetical protein YP_004476425.1 PFAM: transglycosylase-associated protein; KEGG: pmy:Pmen_0116 transglycosylase-associated protein YP_004476426.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: pmy:Pmen_0118 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004476427.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, core; KEGG: pmy:Pmen_0119 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: phosphoribosylaminoimidazole carboxylase, core YP_004476428.1 KEGG: pmy:Pmen_0120 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: polyketide synthase, enoylreductase YP_004476429.1 KEGG: pmy:Pmen_0121 hypothetical protein YP_004476430.1 KEGG: pap:PSPA7_4043 ABC transporter binding protein subunit; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004476431.1 KEGG: pag:PLES_38401 permease of ABC transporter; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004476432.1 KEGG: pag:PLES_38411 permease of ABC transporter; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004476433.1 PFAM: ABC transporter-like; KEGG: pfs:PFLU1136 glutamate/aspartate ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004476434.1 TIGRFAM: gamma-glutamyltranspeptidase; KEGG: pag:PLES_38431 gamma-glutamyltranspeptidase precursor; PFAM: gamma-glutamyltranspeptidase YP_004476435.1 KEGG: pfl:PFL_4875 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004476436.1 KEGG: pfl:PFL_4876 sigma-54 dependent DNA-binding response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004476437.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; KEGG: ppu:PP_4217 outer membrane ferripyoverdine receptor; SMART: Secretin/TonB, short N-terminal YP_004476438.1 PFAM: FecR protein; KEGG: avn:Avin_44140 PupR/FecR-like anti-sigma factor protein YP_004476439.1 KEGG: avn:Avin_44150 FecI-like iron uptake RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004476440.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_0127 LysR family transcriptional regulator YP_004476441.1 TIGRFAM: aspartate ammonia-lyase; KEGG: pfl:PFL_6128 aspartate ammonia-lyase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal YP_004476442.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: nve:NEMVE_v1g225839 hypothetical protein YP_004476443.1 KEGG: nve:NEMVE_v1g225839 hypothetical protein YP_004476444.1 KEGG: pau:PA14_35470 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004476445.1 KEGG: pag:PLES_30521 AGCS sodium/alanine/glycine symporter; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004476446.1 PFAM: Asparaginase/glutaminase; KEGG: pmy:Pmen_0136 asparaginase; SMART: Asparaginase/glutaminase YP_004476447.1 KEGG: ttu:TERTU_2564 lipoprotein YP_004476448.1 PFAM: glutaminase; TIGRFAM: glutaminase; HAMAP: glutaminase; KEGG: pfo:Pfl01_3373 glutaminase YP_004476449.1 PFAM: Homocysteine S-methyltransferase; KEGG: ppu:PP_0658 homocysteine S-methyltransferase YP_004476450.1 KEGG: psp:PSPPH_1023 amino acid ABC transporter periplasmic amino acid-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004476451.1 KEGG: psp:PSPPH_1022 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004476452.1 KEGG: pwa:Pecwa_1099 hypothetical protein YP_004476453.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_0137 GCN5-related N-acetyltransferase YP_004476454.1 KEGG: tbi:Tbis_0134 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004476455.1 KEGG: psb:Psyr_0621 hypothetical protein YP_004476456.1 PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: pag:PLES_58251 hypothetical protein YP_004476457.1 KEGG: dsa:Desal_0741 hypothetical protein YP_004476458.1 TIGRFAM: Oxaloacetate decarboxylase, alpha subunit; KEGG: pmy:Pmen_4478 pyruvate carboxylase subunit B; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase; Biotin/lipoyl attachment YP_004476459.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; KEGG: pmy:Pmen_4479 pyruvate carboxylase subunit A; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004476460.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pmy:Pmen_4480 LysR family transcriptional regulator YP_004476461.1 manually curated; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: pap:PSPA7_4121 transcriptional regulator; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004476462.1 PFAM: YkuD domain; peptidoglycan binding-like; KEGG: avn:Avin_41210 petidoglycan binding protein YP_004476463.1 KEGG: psa:PST_0269 hypothetical protein YP_004476464.1 KEGG: pag:PLES_40441 proline racemase; PFAM: Proline racemase YP_004476465.1 PFAM: FAD dependent oxidoreductase; KEGG: pag:PLES_40451 D-amino acid oxidase YP_004476466.1 PFAM: ferredoxin; KEGG: pap:PSPA7_4124 hypothetical protein YP_004476467.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; KEGG: pag:PLES_40461 oxidoreductase YP_004476468.1 KEGG: pap:PSPA7_4130 transcriptional regulator; PFAM: PAS fold-4; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004476469.1 KEGG: pag:PLES_40581 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase YP_004476470.1 KEGG: avn:Avin_49290 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004476471.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pmy:Pmen_4580 major facilitator transporter YP_004476472.1 KEGG: hch:HCH_03986 hypothetical protein YP_004476473.1 KEGG: pfo:Pfl01_3676 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; Leucine-rich repeat; SMART: serine/threonine-protein kinase domain; Leucine-rich repeat, typical subtype; Tyrosine-protein kinase, catalytic domain YP_004476474.1 KEGG: rpf:Rpic12D_0004 hypothetical protein YP_004476475.1 manually curated; KEGG: pap:PSPA7_2222 magnesium chelatase subunit ChlD YP_004476476.1 PFAM: ATPase, AAA-5; KEGG: pmy:Pmen_4585 protoporphyrin IX magnesium-chelatase; SMART: ATPase, AAA+ type, core YP_004476477.1 KEGG: sno:Snov_1680 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004476478.1 PFAM: NUDIX hydrolase domain; KEGG: pfl:PFL_3023 NUDIX family hydrolase YP_004476480.1 TIGRFAM: DHAP synthase, class 1; KEGG: psa:PST_1277 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004476481.1 KEGG: pap:PSPA7_3913 ABC transporter ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004476482.1 KEGG: sus:Acid_7162 amino acid permease-associated region YP_004476483.1 TIGRFAM: Cobaltochelatase, CobN subunit; KEGG: pmy:Pmen_4586 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase YP_004476484.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobW; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: pmy:Pmen_4587 cobalamin biosynthesis protein CobW; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_004476485.1 KEGG: pfs:PFLU2668 hypothetical protein; TIGRFAM: Cobalt transporter subunit CbtB, PFAM: Cobalt transporter subunit CbtB YP_004476486.1 TIGRFAM: Cobalt transporter subunit CbtA, KEGG: pau:PA14_25940 hypothetical protein YP_004476487.1 PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; KEGG: pag:PLES_21161 cobalamin biosynthesis protein YP_004476488.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; KEGG: pfs:PFLU2665 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase YP_004476490.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; PAS fold-3; KEGG: pfs:PFLU0637 two-component system sensor kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif YP_004476491.1 PFAM: peptidase A24A, prepilin type IV; KEGG: pfo:Pfl01_0639 peptidase A24A, prepilin type IV YP_004476492.1 KEGG: pen:PSEEN0653 LuxR family DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004476493.1 KEGG: pfs:PFLU0641 hypothetical protein YP_004476494.1 KEGG: pfs:PFLU0642 lipoprotein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat YP_004476495.1 PFAM: Type II secretion system F domain; KEGG: pfs:PFLU0643 hypothetical protein YP_004476496.1 PFAM: Type II secretion system F domain; KEGG: pfs:PFLU0644 hypothetical protein YP_004476497.1 PFAM: Type II secretion system protein E; KEGG: ppw:PputW619_0846 type II secretion system protein E YP_004476498.1 KEGG: pfl:PFL_0696 hypothetical protein YP_004476499.1 PFAM: Type II/III secretion system; KEGG: psb:Psyr_4391 type II and III secretion system protein YP_004476500.1 TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain; KEGG: pfs:PFLU0648 hypothetical protein; SMART: SAF domain YP_004476501.1 PFAM: Flp/Fap pilin component; KEGG: rso:RS02598 pilin protein YP_004476502.1 KEGG: pfl:PFL_0700 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004476503.1 KEGG: pmy:Pmen_3383 superfamily I DNA/RNA helicase YP_004476504.1 PFAM: Patatin/phospholipase A2-related; Surface antigen variable number; KEGG: psa:PST_2465 outer membrane protein YP_004476505.1 KEGG: pst:PSPTO_5513 hypothetical protein YP_004476506.1 PFAM: protein of unknown function DUF1375; KEGG: pfl:PFL_3817 lipoprotein YP_004476507.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: pmy:Pmen_4485 RpiR family transcriptional regulator YP_004476508.1 TIGRFAM: glucose-6-phosphate dehydrogenase; KEGG: pmy:Pmen_4486 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase, C-terminal; glucose-6-phosphate dehydrogenase, NAD-binding YP_004476509.1 KEGG: pag:PLES_34491 hypothetical protein YP_004476510.1 PFAM: Outer membrane efflux protein; KEGG: pap:PSPA7_3411 hypothetical protein YP_004476511.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system; KEGG: pae:PA1876 probable ATP-binding/permease fusion ABC transporter; PFAM: ABC transporter-like YP_004476512.1 KEGG: pag:PLES_34461 secretion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004476513.1 PFAM: TadE-like; KEGG: pag:PLES_46741 pilus assembly protein YP_004476514.1 KEGG: smt:Smal_2328 membrane protein-like protein YP_004476515.1 PFAM: TadE-like; KEGG: pag:PLES_46741 pilus assembly protein YP_004476516.1 PFAM: protein of unknown function DUF839; KEGG: pfl:PFL_5696 Tat pathway signal sequence domain-containing protein YP_004476517.1 KEGG: pmy:Pmen_4591 hypothetical protein YP_004476518.1 TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: pmy:Pmen_4592 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain YP_004476519.1 PFAM: protein of unknown function DUF161; KEGG: nca:Noca_3372 hypothetical protein YP_004476520.1 PFAM: glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: pmy:Pmen_4602 glucosamine--fructose-6-phosphate aminotransferase YP_004476521.1 KEGG: pmy:Pmen_4603 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004476522.1 PFAM: nucleotidyl transferase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: pmy:Pmen_4605 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase YP_004476523.1 TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: psp:PSPPH_5206 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal YP_004476524.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: avn:Avin_52160 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004476525.1 TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATPase, F1 complex, gamma subunit; KEGG: pfs:PFLU6119 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit YP_004476526.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: psp:PSPPH_5209 F0F1 ATP synthase subunit alpha; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004476527.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: pfl:PFL_6219 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004476528.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: pen:PSEEN5546 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004476529.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: pen:PSEEN5547 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C YP_004476530.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATPase, F0 complex, subunit A; KEGG: pag:PLES_59561 F0F1 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A YP_004476531.1 PFAM: ATPase, F0 complex, subunit I; KEGG: pfs:PFLU6125 F0F1 ATP synthase subunit I YP_004476532.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: psa:PST_4199 chromosome partitioning protein ParB; SMART: ParB-like nuclease YP_004476533.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pmy:Pmen_4616 chromosome segregation ATPase YP_004476534.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: pmy:Pmen_4617 16S rRNA methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004476535.1 TIGRFAM: glucose-inhibited division protein A; HAMAP: glucose-inhibited division protein A; KEGG: pfl:PFL_6226 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A-related YP_004476536.1 KEGG: tga:TGAM_1239 hypothetical protein YP_004476537.1 KEGG: pae:PA2684 hypothetical protein; TIGRFAM: Rhs repeat-associated core; YD repeat; PFAM: RHS protein; YD repeat YP_004476538.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: psa:PST_4210 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004476539.1 TIGRFAM: Membrane insertion protein, OxaA/YidC, bacterial; Membrane insertion protein, OxaA/YidC; HAMAP: Membrane insertion protein, OxaA/YidC, bacterial; KEGG: pmy:Pmen_4620 inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC YP_004476540.1 PFAM: protein of unknown function DUF37; manually curated; TIGRFAM: protein of unknown function DUF37; KEGG: pfo:Pfl01_5744 hypothetical protein; HAMAP: protein of unknown function DUF37 YP_004476541.1 TIGRFAM: ribonuclease P; HAMAP: ribonuclease P; KEGG: pmy:Pmen_4622 ribonuclease P; PFAM: ribonuclease P YP_004476542.1 TIGRFAM: ribosomal protein L34; HAMAP: ribosomal protein L34; KEGG: pmy:Pmen_4623 50S ribosomal protein L34P; PFAM: ribosomal protein L34