-- dump date 20120504_155552 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 160488000001 SEQ_END SEQ_END NC_002947.3 6181863 6181863 DR NC_002947.3; contig end 6181863..6181863 Pseudomonas putida KT2440 NP_742171.1 CDS parB NC_002947.3 147 1019 R identified by match to PFAM protein family HMM PF02195; parB-like partition protein complement(147..1019) Pseudomonas putida KT2440 1043468 NP_742172.1 CDS PP_0002 NC_002947.3 1029 1820 R similar to GB:V00540, GB:J00212, GB:M12350, GB:M28586, GB:M10201, SP:P01568, SP:P05014, PID:184655, PID:306905, PID:306906, PID:306912, PID:32717, PID:32725, PID:758078, and PID:825603; identified by sequence similarity; ParA family protein complement(1029..1820) Pseudomonas putida KT2440 1043469 NP_742173.1 CDS gidB NC_002947.3 1839 2489 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1839..2489) Pseudomonas putida KT2440 1043471 NP_742174.1 CDS gidA NC_002947.3 2486 4381 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(2486..4381) Pseudomonas putida KT2440 1043472 NP_742175.1 CDS trmE NC_002947.3 5012 6382 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5012..6382) Pseudomonas putida KT2440 1043475 NP_742176.1 CDS yidC NC_002947.3 6471 8153 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(6471..8153) Pseudomonas putida KT2440 1043481 NP_742177.1 CDS PP_0007 NC_002947.3 8156 8401 R similar to GB:L11566, SP:Q07020, PID:337493, GB:L11566, SP:Q07020, and PID:337493; identified by sequence similarity; hypothetical protein complement(8156..8401) Pseudomonas putida KT2440 1043483 NP_742178.1 CDS rnpA NC_002947.3 8394 8798 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(8394..8798) Pseudomonas putida KT2440 1043484 NP_742179.1 CDS rpmH NC_002947.3 8812 8946 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(8812..8946) Pseudomonas putida KT2440 1043485 NP_742180.1 CDS dnaA NC_002947.3 9542 11062 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 9542..11062 Pseudomonas putida KT2440 1043486 NP_742181.1 CDS dnaN NC_002947.3 11103 12206 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 11103..12206 Pseudomonas putida KT2440 1043487 NP_742182.1 CDS recF NC_002947.3 12222 13325 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 12222..13325 Pseudomonas putida KT2440 1043488 NP_742183.1 CDS gyrB NC_002947.3 13330 15750 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 13330..15750 Pseudomonas putida KT2440 1043489 NP_742184.1 CDS PP_0014 NC_002947.3 17133 19166 D similar to GP:11071900; identified by sequence similarity; transposase 17133..19166 Pseudomonas putida KT2440 1043490 NP_742185.1 CDS PP_0015 NC_002947.3 19163 20122 D ATPase AAA 19163..20122 Pseudomonas putida KT2440 1043491 NP_742186.1 CDS PP_0016 NC_002947.3 20198 22114 D hypothetical protein 20198..22114 Pseudomonas putida KT2440 1043492 NP_742187.1 CDS PP_0017 NC_002947.3 22171 22530 D transcriptional regulator MvaT, P16 subunit 22171..22530 Pseudomonas putida KT2440 1043493 NP_742188.1 CDS PP_0018 NC_002947.3 23176 24018 D hypothetical protein 23176..24018 Pseudomonas putida KT2440 1043494 NP_742189.1 CDS PP_0019 NC_002947.3 24000 24698 D hypothetical protein 24000..24698 Pseudomonas putida KT2440 1043495 NP_742190.1 CDS PP_0020 NC_002947.3 24695 25570 D hypothetical protein 24695..25570 Pseudomonas putida KT2440 1043496 NP_742191.1 CDS PP_0021 NC_002947.3 25881 26804 D hypothetical protein 25881..26804 Pseudomonas putida KT2440 1043497 NP_742192.1 CDS PP_0022 NC_002947.3 26989 27390 R hypothetical protein complement(26989..27390) Pseudomonas putida KT2440 1043500 NP_742193.1 CDS PP_0023 NC_002947.3 27599 27727 R hypothetical protein complement(27599..27727) Pseudomonas putida KT2440 1043502 NP_742194.1 CDS PP_0024 NC_002947.3 27850 29547 R identified by match to PFAM protein family HMM PF02418; hypothetical protein complement(27850..29547) Pseudomonas putida KT2440 1043503 NP_742195.1 CDS PP_0025 NC_002947.3 29990 30142 R hypothetical protein complement(29990..30142) Pseudomonas putida KT2440 1043504 NP_742196.1 CDS PP_0026 NC_002947.3 30431 31336 D similar to SP:P13512; identified by sequence similarity; CDF family cobalt/cadmium/zinc transporter 30431..31336 Pseudomonas putida KT2440 1043505 NP_742197.1 CDS PP_0027 NC_002947.3 31404 31844 D hypothetical protein 31404..31844 Pseudomonas putida KT2440 1043506 NP_742198.1 CDS PP_0028 NC_002947.3 31877 32203 R similar to GP:12484570; identified by sequence similarity; hypothetical protein complement(31877..32203) Pseudomonas putida KT2440 1043507 NP_742199.1 CDS czrR-1 NC_002947.3 32893 33567 D identified by match to TIGR protein family HMM TIGR01387; DNA-binding response regulator CzrR 32893..33567 Pseudomonas putida KT2440 1043508 NP_742200.1 CDS PP_0030 NC_002947.3 33564 34982 D identified by match to TIGR protein family HMM TIGR01386; sensor histidine kinase 33564..34982 Pseudomonas putida KT2440 1043509 NP_742201.1 CDS PP_0031 NC_002947.3 35040 35627 R hypothetical protein complement(35040..35627) Pseudomonas putida KT2440 1043510 NP_742202.1 CDS PP_0032 NC_002947.3 35894 36115 D hypothetical protein 35894..36115 Pseudomonas putida KT2440 1043512 NP_742203.1 CDS PP_0033 NC_002947.3 36198 37652 R identified by match to PFAM protein family HMM PF02366; sugar transferase complement(36198..37652) Pseudomonas putida KT2440 1043513 NP_742204.1 CDS PP_0034 NC_002947.3 37646 38629 R identified by match to PFAM protein family HMM PF00535; ribonuclease III complement(37646..38629) Pseudomonas putida KT2440 1043514 NP_742205.1 CDS PP_0035 NC_002947.3 38595 39014 R similar to SP:Q06206, GB:Z21940, and PID:287738; identified by sequence similarity; GtrA family protein complement(38595..39014) Pseudomonas putida KT2440 1043515 NP_742206.1 CDS PP_0036 NC_002947.3 39272 40240 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 39272..40240 Pseudomonas putida KT2440 1043516 NP_742207.1 CDS oprP NC_002947.3 40469 41758 D similar to GB:X63597, GB:M22616, SP:P14410, PID:338090, and PID:36645; identified by sequence similarity; phosphate-selective porin O and P 40469..41758 Pseudomonas putida KT2440 1043517 NP_742208.1 CDS PP_0038 NC_002947.3 41778 41912 D hypothetical protein 41778..41912 Pseudomonas putida KT2440 1043518 NP_742209.1 CDS PP_0039 NC_002947.3 42057 43082 D hypothetical protein 42057..43082 Pseudomonas putida KT2440 1043519 NP_742210.1 CDS PP_0040 NC_002947.3 43210 43434 D hypothetical protein 43210..43434 Pseudomonas putida KT2440 1043520 NP_742211.1 CDS cadA-1 NC_002947.3 43527 45524 R similar to GB:U13922, PID:549844, GB:J04456, GB:M57678, GB:D28452, GB:X15256, GB:X14829, GB:S44881, SP:P05163, SP:P09382, PID:184228, PID:23239, PID:307122, and PID:34343; identified by sequence similarity; heavy metal translocating P-type ATPase complement(43527..45524) Pseudomonas putida KT2440 1043522 NP_742212.1 CDS PP_0042 NC_002947.3 45727 45939 R similar to GP:12484570; identified by sequence similarity; hypothetical protein complement(45727..45939) Pseudomonas putida KT2440 1043523 NP_742213.1 CDS PP_0043 NC_002947.3 46213 49374 R identified by match to PFAM protein family HMM PF04295; CzcA family cobalt/zinc/cadmium efflux transporter permease complement(46213..49374) Pseudomonas putida KT2440 1043524 NP_742214.1 CDS PP_0044 NC_002947.3 49399 50649 R identified by match to TIGR protein family HMM TIGR01730; CzcB family cobalt/zinc/cadmium efflux transporter membrane fusion protein complement(49399..50649) Pseudomonas putida KT2440 1043525 NP_742215.1 CDS PP_0045 NC_002947.3 50718 51989 R similar to SP:P13509; identified by sequence similarity; CzcC family cobalt/zinc/cadmium efflux transporter outer membrane protein complement(50718..51989) Pseudomonas putida KT2440 1043526 NP_742216.1 CDS PP_0046 NC_002947.3 52394 53737 D similar to GP:2645844; identified by sequence similarity; porin 52394..53737 Pseudomonas putida KT2440 1043527 NP_742217.1 CDS PP_0047 NC_002947.3 54227 54901 D identified by match to TIGR protein family HMM TIGR01387; DNA-binding heavy metal response regulator 54227..54901 Pseudomonas putida KT2440 1043528 NP_742218.1 CDS PP_0048 NC_002947.3 55019 55342 D hypothetical protein 55019..55342 Pseudomonas putida KT2440 1043529 NP_742219.1 CDS PP_0049 NC_002947.3 56161 57627 R hypothetical protein complement(56161..57627) Pseudomonas putida KT2440 1043530 NP_742220.1 CDS PP_0050 NC_002947.3 58777 59184 R similar to GP:15074850; identified by sequence similarity; hypothetical protein complement(58777..59184) Pseudomonas putida KT2440 1043531 NP_742221.1 CDS PP_0051 NC_002947.3 59316 60608 R identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator complement(59316..60608) Pseudomonas putida KT2440 1043532 NP_742222.1 CDS PP_0052 NC_002947.3 60831 61715 D identified by match to PFAM protein family HMM PF00753; beta-lactamase domain-containing protein 60831..61715 Pseudomonas putida KT2440 1043533 NP_742223.1 CDS PP_0053 NC_002947.3 61756 63024 D similar to GP:9948381; identified by sequence similarity; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 61756..63024 Pseudomonas putida KT2440 1043534 NP_742224.1 CDS PP_0054 NC_002947.3 62982 63839 D similar to GP:9949599, and GP:9949599; identified by sequence similarity; hypothetical protein 62982..63839 Pseudomonas putida KT2440 1043535 NP_742225.1 CDS PP_0055 NC_002947.3 63828 64715 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(63828..64715) Pseudomonas putida KT2440 1043536 NP_742226.1 CDS PP_0056 NC_002947.3 64943 66595 D identified by match to PFAM protein family HMM PF00732; GMC family oxidoreductase 64943..66595 Pseudomonas putida KT2440 1043537 NP_742227.1 CDS PP_0057 NC_002947.3 66693 68312 D identified by match to PFAM protein family HMM PF00083; major facilitator family transporter 66693..68312 Pseudomonas putida KT2440 1043538 NP_742228.1 CDS PP_0058 NC_002947.3 68487 69272 R similar to GP:11120074; identified by sequence similarity; phospholipid/glycerol acyltransferase complement(68487..69272) Pseudomonas putida KT2440 1043539 NP_742229.1 CDS PP_0059 NC_002947.3 69319 69846 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(69319..69846) Pseudomonas putida KT2440 1043540 NP_742230.1 CDS glyS NC_002947.3 69850 71904 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(69850..71904) Pseudomonas putida KT2440 1043541 NP_742231.1 CDS glyQ NC_002947.3 71901 72848 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(71901..72848) Pseudomonas putida KT2440 1043542 NP_742232.1 CDS tag NC_002947.3 72932 73483 D similar to SP:P05100; identified by sequence similarity; DNA-3-methyladenine glycosylase I 72932..73483 Pseudomonas putida KT2440 1043543 NP_742233.1 CDS PP_0063 NC_002947.3 73525 74412 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 73525..74412 Pseudomonas putida KT2440 1043544 NP_742234.1 CDS PP_0064 NC_002947.3 74510 74824 R similar to GP:9945834; identified by sequence similarity; hypothetical protein complement(74510..74824) Pseudomonas putida KT2440 1043545 NP_742235.1 CDS trkA NC_002947.3 74836 76209 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(74836..76209) Pseudomonas putida KT2440 1043546 NP_742236.1 CDS sun NC_002947.3 76233 77543 R identified by match to PFAM protein family HMM PF01189; sun protein complement(76233..77543) Pseudomonas putida KT2440 1043547 NP_742237.1 CDS fmt NC_002947.3 77540 78472 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(77540..78472) Pseudomonas putida KT2440 1043548 NP_742238.1 CDS def NC_002947.3 78533 79039 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(78533..79039) Pseudomonas putida KT2440 1043549 NP_742239.1 CDS PP_0069 NC_002947.3 79246 80343 D similar to GP:9945840, GB:L29642, and PID:461402; identified by sequence similarity; DNA protecting protein DprA 79246..80343 Pseudomonas putida KT2440 1043550 NP_742240.1 CDS PP_0070 NC_002947.3 80386 80943 D identified by match to TIGR protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 80386..80943 Pseudomonas putida KT2440 1043551 NP_742241.1 CDS PP_0071 NC_002947.3 81562 82023 D hypothetical protein 81562..82023 Pseudomonas putida KT2440 1043552 NP_742242.1 CDS qor-1 NC_002947.3 82151 83128 R identified by match to TIGR protein family HMM TIGR01751; quinone oxidoreductase complement(82151..83128) Pseudomonas putida KT2440 1043553 NP_742243.1 CDS hemF NC_002947.3 83261 84172 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 83261..84172 Pseudomonas putida KT2440 1043554 NP_742244.1 CDS aroE NC_002947.3 84198 85022 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 84198..85022 Pseudomonas putida KT2440 1043555 NP_742245.1 CDS PP_0075 NC_002947.3 85152 86717 R identified by match to PFAM protein family HMM PF04235; sulfate transporter complement(85152..86717) Pseudomonas putida KT2440 1043556 NP_742246.1 CDS PP_0076 NC_002947.3 86861 87802 R similar to GP:9945850; identified by sequence similarity; glycine/betaine-binding protein complement(86861..87802) Pseudomonas putida KT2440 1043557 NP_742247.1 CDS betC NC_002947.3 87799 89316 R similar to SP:O69787; identified by sequence similarity; choline sulfatase complement(87799..89316) Pseudomonas putida KT2440 1043558 NP_742248.1 CDS PP_0078 NC_002947.3 89315 89416 D hypothetical protein 89315..89416 Pseudomonas putida KT2440 1043559 NP_742249.1 CDS PP_0079 NC_002947.3 89425 90324 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 89425..90324 Pseudomonas putida KT2440 1043560 NP_742250.1 CDS PP_0080 NC_002947.3 90446 91063 R similar to GP:9948196; identified by sequence similarity; hypothetical protein complement(90446..91063) Pseudomonas putida KT2440 1043561 NP_742251.1 CDS PP_0081 NC_002947.3 91077 91448 D similar to SP:P56739; identified by sequence similarity; hypothetical protein 91077..91448 Pseudomonas putida KT2440 1043562 NP_742252.1 CDS trpA NC_002947.3 91569 92378 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(91569..92378) Pseudomonas putida KT2440 1043563 NP_742253.1 CDS trpB NC_002947.3 92375 93592 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(92375..93592) Pseudomonas putida KT2440 1043564 NP_742254.1 CDS trpI NC_002947.3 93703 94599 D similar to GB:X13589, GB:Y07508, GB:M22246, GB:S85356, GB:M74714, GB:J04127, GB:M30795, GB:M30796, GB:M30797, GB:M30798, GB:M30799, GB:M30800, GB:M30801, GB:M30802, GB:M30803, GB:M30804, GB:M18856, GB:M28420, GB:S58866, GB:S85075, GB:S52793, GB:M32245, GB:X55983, GB:D14473, GB:S67206, GB:L21982, GB:S52789, SP:P11511, GB:X13589, GB:Y07508, GB:M22246, GB:S85356, GB:M74714, GB:J04127, GB:M30795, GB:M30796, GB:M30797, GB:M30798, GB:M30799, GB:M30800, GB:M30801, GB:M30802, GB:M30803, GB:M30804, GB:M18856, GB:M28420, GB:S58866, GB:S85075, GB:S52793, GB:M32245, GB:X55983, GB:D14473, GB:S67206, GB:L21982, GB:S52789, and SP:P11511; identified by sequence similarity; LysR family transcriptional regulator 93703..94599 Pseudomonas putida KT2440 1043565 NP_742255.1 CDS PP_0085 NC_002947.3 94596 95084 R similar to GB:L05186, GB:L13616, SP:Q05397, PID:439875, GB:L05186, GB:L13616, SP:Q05397, and PID:439875; identified by sequence similarity; hypothetical protein complement(94596..95084) Pseudomonas putida KT2440 1043566 NP_742256.1 CDS PP_0086 NC_002947.3 95070 95285 D similar to GP:9945859; identified by sequence similarity; hypothetical protein 95070..95285 Pseudomonas putida KT2440 1043567 NP_742257.1 CDS PP_0087 NC_002947.3 95344 95607 D similar to GP:9945860; identified by sequence similarity; hypothetical protein 95344..95607 Pseudomonas putida KT2440 1043568 NP_742258.1 CDS PP_0088 NC_002947.3 95679 96683 R identified by match to PFAM protein family HMM PF00296; luciferase complement(95679..96683) Pseudomonas putida KT2440 1043569 NP_742259.1 CDS osmC NC_002947.3 96836 97261 D similar to SP:P23929; identified by sequence similarity; OsmC family protein 96836..97261 Pseudomonas putida KT2440 1043570 NP_742260.1 CDS PP_0090 NC_002947.3 97274 97570 D hypothetical protein 97274..97570 Pseudomonas putida KT2440 1043571 NP_742261.1 CDS PP_0091 NC_002947.3 97606 98019 R lipoprotein complement(97606..98019) Pseudomonas putida KT2440 1043573 NP_742262.1 CDS PP_0092 NC_002947.3 98075 98488 R lipoprotein complement(98075..98488) Pseudomonas putida KT2440 1043574 NP_742263.1 CDS PP_0093 NC_002947.3 98487 99650 D similar to GP:9945887; identified by sequence similarity; hypothetical protein 98487..99650 Pseudomonas putida KT2440 1043575 NP_742264.1 CDS PP_0094 NC_002947.3 99757 100407 R identified by match to TIGR protein family HMM TIGR01454; HAD superfamily hydrolase complement(99757..100407) Pseudomonas putida KT2440 1043576 NP_742265.1 CDS PP_0095 NC_002947.3 100529 101077 R similar to GP:9945890; identified by sequence similarity; anhydrase 3 protein complement(100529..101077) Pseudomonas putida KT2440 1043577 NP_742266.1 CDS prlC NC_002947.3 101180 103231 D similar to GB:X51956, GB:M22349, GB:X13120, GB:X14327, SP:P06733, SP:P09104, SP:P13929, SP:Q05524, PID:1732416, PID:182116, PID:182118, PID:31165, PID:693933, PID:930063, and PID:930101; identified by sequence similarity; oligopeptidase A 101180..103231 Pseudomonas putida KT2440 1043578 NP_742267.1 CDS PP_0097 NC_002947.3 103228 103509 D similar to GP:9945892, and GP:9945892; identified by sequence similarity; hypothetical protein 103228..103509 Pseudomonas putida KT2440 1043579 NP_742268.1 CDS PP_0098 NC_002947.3 103528 103701 D similar to GB:U20657, and SP:Q13107; identified by sequence similarity; hypothetical protein 103528..103701 Pseudomonas putida KT2440 1043580 NP_742269.1 CDS PP_0099 NC_002947.3 103841 104899 D identified by match to PFAM protein family HMM PF04055; radical SAM domain-containing protein 103841..104899 Pseudomonas putida KT2440 1043581 NP_742270.1 CDS cynT NC_002947.3 105206 105925 D identified by match to PFAM protein family HMM PF00484; carbonate dehydratase 105206..105925 Pseudomonas putida KT2440 1043582 NP_742271.1 CDS PP_0101 NC_002947.3 106133 107650 D identified by match to PFAM protein family HMM PF04172; sulfate transporter 106133..107650 Pseudomonas putida KT2440 1043583 NP_742272.1 CDS PP_0102 NC_002947.3 107786 108676 D similar to GP:9945931; identified by sequence similarity; hypothetical protein 107786..108676 Pseudomonas putida KT2440 1043585 NP_742273.1 CDS PP_0103 NC_002947.3 108809 109936 D identified by match to PFAM protein family HMM PF00034; cytochrome c oxidase subunit II 108809..109936 Pseudomonas putida KT2440 1043588 NP_742274.1 CDS PP_0104 NC_002947.3 109980 111569 D identified by match to TIGR protein family HMM TIGR00780; cytochrome c oxidase subunit I 109980..111569 Pseudomonas putida KT2440 1043590 NP_742275.1 CDS PP_0105 NC_002947.3 111579 112145 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 111579..112145 Pseudomonas putida KT2440 1043591 NP_742276.1 CDS PP_0106 NC_002947.3 112162 113049 D identified by match to PFAM protein family HMM PF04238; cytochrome c oxidase subunit III 112162..113049 Pseudomonas putida KT2440 1043592 NP_742277.1 CDS PP_0107 NC_002947.3 113072 114073 D hypothetical protein 113072..114073 Pseudomonas putida KT2440 1043593 NP_742278.1 CDS PP_0108 NC_002947.3 114042 114623 D similar to GP:9945938; identified by sequence similarity; hypothetical protein 114042..114623 Pseudomonas putida KT2440 1043596 NP_742279.1 CDS PP_0109 NC_002947.3 114633 115712 D similar to GP:9945939; identified by sequence similarity; cytochrome oxidase assembly 114633..115712 Pseudomonas putida KT2440 1043598 NP_742280.1 CDS cyoE-1 NC_002947.3 115697 116590 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 115697..116590 Pseudomonas putida KT2440 1043599 NP_742281.1 CDS PP_0111 NC_002947.3 116587 117219 D identified by match to PFAM protein family HMM PF00578; electron transport protein SCO1/SenC 116587..117219 Pseudomonas putida KT2440 1043600 NP_742282.1 CDS PP_0112 NC_002947.3 117313 118083 R identified by match to PFAM protein family HMM PF03180; metal ABC transporter substrate-binding protein complement(117313..118083) Pseudomonas putida KT2440 1043602 NP_742283.1 CDS PP_0113 NC_002947.3 118148 118819 R identified by match to TIGR protein family HMM TIGR01726; ABC transporter permease complement(118148..118819) Pseudomonas putida KT2440 1043604 NP_742284.1 CDS metN NC_002947.3 118819 119826 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(118819..119826) Pseudomonas putida KT2440 1043605 NP_742285.1 CDS katE NC_002947.3 120054 122189 D Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 120054..122189 Pseudomonas putida KT2440 1043606 NP_742286.1 CDS PP_0116 NC_002947.3 122250 122957 R similar to GP:9951837; identified by sequence similarity; lipoprotein complement(122250..122957) Pseudomonas putida KT2440 1043607 NP_742287.1 CDS znuB NC_002947.3 123084 123866 R identified by match to PFAM protein family HMM PF01032; hypothetical protein complement(123084..123866) Pseudomonas putida KT2440 1043608 NP_742288.1 CDS znuC NC_002947.3 123859 124632 R identified by match to TIGR protein family HMM TIGR00968; zinc ABC transporter ATP-binding protein complement(123859..124632) Pseudomonas putida KT2440 1043610 NP_742289.1 CDS PP_0119 NC_002947.3 124629 125036 R similar to GP:9951834; identified by sequence similarity; FUR family transcriptional regulator complement(124629..125036) Pseudomonas putida KT2440 1043612 NP_742290.1 CDS PP_0120 NC_002947.3 125181 126089 D similar to SP:P18840, PID:145279, GB:U00096, PID:1742878, and PID:1788065; identified by sequence similarity; ABC transporter substrate-binding protein 125181..126089 Pseudomonas putida KT2440 1043613 NP_742291.1 CDS thrB NC_002947.3 126139 127089 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(126139..127089) Pseudomonas putida KT2440 1043614 NP_742292.1 CDS PP_0122 NC_002947.3 127159 127446 R hypothetical protein complement(127159..127446) Pseudomonas putida KT2440 1043615 NP_742293.1 CDS polA NC_002947.3 127522 130269 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 127522..130269 Pseudomonas putida KT2440 1043618 NP_742294.1 CDS engB NC_002947.3 130640 131272 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(130640..131272) Pseudomonas putida KT2440 1043619 NP_742295.1 CDS PP_0125 NC_002947.3 131474 131776 D similar to GP:9951825; identified by sequence similarity; cytochrome c-type protein 131474..131776 Pseudomonas putida KT2440 1043620 NP_742296.1 CDS PP_0126 NC_002947.3 131808 132425 D similar to GB:M25322, GB:M60218, GB:M60219, GB:M60222, GB:M60223, GB:M60224, GB:M60225, GB:M60226, GB:M60227, GB:M60228, GB:M60229, GB:M60230, GB:M60231, GB:M60232, GB:M60233, GB:M60234, GB:M60235, SP:P16109, PID:183389, and PID:183391; identified by sequence similarity; cytochrome c4 131808..132425 Pseudomonas putida KT2440 1043621 NP_742297.1 CDS PP_0127 NC_002947.3 132577 133209 D similar to GP:2707768; identified by sequence similarity; DsbA family thiol:disulfide interchange protein 132577..133209 Pseudomonas putida KT2440 1043624 NP_742298.1 CDS PP_0128 NC_002947.3 133222 134076 D identified by match to PFAM protein family HMM PF03372; hypothetical protein 133222..134076 Pseudomonas putida KT2440 1043625 NP_742299.1 CDS PP_0129 NC_002947.3 134104 136041 D identified by match to PFAM protein family HMM PF04156; diguanylate cyclase 134104..136041 Pseudomonas putida KT2440 1043626 NP_742300.1 CDS PP_0130 NC_002947.3 136115 136903 D identified by match to PFAM protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 136115..136903 Pseudomonas putida KT2440 1043628 NP_742301.1 CDS PP_0131 NC_002947.3 137099 138706 D identified by match to PFAM protein family HMM PF00563; diguanylate phosphodiesterase 137099..138706 Pseudomonas putida KT2440 1043629 NP_742302.1 CDS PP_0132 NC_002947.3 138721 140502 R identified by match to PFAM protein family HMM PF00512; multi-sensor signal transduction histidine kinase complement(138721..140502) Pseudomonas putida KT2440 1043632 NP_742303.1 CDS algB NC_002947.3 140499 141845 R similar to GB:X12966, GB:X14813, GB:X65140, SP:P09110, PID:1340140, PID:23874, PID:23876, PID:825617, GB:X12966, GB:X14813, GB:X65140, SP:P09110, PID:1340140, PID:23874, PID:23876, and PID:825617; identified by sequence similarity; Fis family transcriptional regulator complement(140499..141845) Pseudomonas putida KT2440 1043633 NP_742304.1 CDS PP_0134 NC_002947.3 142056 142877 D similar to GB:M18731, and PID:182949; identified by sequence similarity; transport-associated protein 142056..142877 Pseudomonas putida KT2440 1043634 NP_742305.1 CDS PP_0135 NC_002947.3 143386 143547 D hypothetical protein 143386..143547 Pseudomonas putida KT2440 1043635 NP_742306.1 CDS PP_0136 NC_002947.3 143550 144020 D similar to GP:9950084; identified by sequence similarity; inhibitor of vertebrate lysozyme 143550..144020 Pseudomonas putida KT2440 1043636 NP_742307.1 CDS gltP NC_002947.3 144766 146094 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 144766..146094 Pseudomonas putida KT2440 1043638 NP_742308.1 CDS PP_0138 NC_002947.3 146242 147471 D identified by match to PFAM protein family HMM PF04291; nucleoside recognition domain-containing protein 146242..147471 Pseudomonas putida KT2440 1043641 NP_742309.1 CDS PP_0139 NC_002947.3 147453 148088 R identified by match to PFAM protein family HMM PF03550; lipoprotein complement(147453..148088) Pseudomonas putida KT2440 1043642 NP_742310.1 CDS PP_0140 NC_002947.3 148085 149023 R identified by match to TIGR protein family HMM TIGR00996; hypothetical protein complement(148085..149023) Pseudomonas putida KT2440 1043644 NP_742311.1 CDS PP_0141 NC_002947.3 149027 149818 R identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein complement(149027..149818) Pseudomonas putida KT2440 1043646 NP_742312.1 CDS PP_0142 NC_002947.3 149815 150948 R identified by match to PFAM protein family HMM PF02405; hypothetical protein complement(149815..150948) Pseudomonas putida KT2440 1043647 NP_742313.1 CDS PP_0143 NC_002947.3 151080 152105 R similar to GP:9951810; identified by sequence similarity; hypothetical protein complement(151080..152105) Pseudomonas putida KT2440 1043648 NP_742314.1 CDS PP_0144 NC_002947.3 152199 153605 R identified by match to PFAM protein family HMM PF00675; insulinase metalloprotease complement(152199..153605) Pseudomonas putida KT2440 1043652 NP_742315.1 CDS PP_0145 NC_002947.3 153636 155294 R identified by match to PFAM protein family HMM PF04284; sodium-dependent inorganic phosphate (Pi) transporter complement(153636..155294) Pseudomonas putida KT2440 1043653 NP_742316.1 CDS PP_0146 NC_002947.3 155577 156374 R identified by match to PFAM protein family HMM PF03741; integral membrane protein TerC complement(155577..156374) Pseudomonas putida KT2440 1043654 NP_742317.1 CDS PP_0147 NC_002947.3 156417 157724 R identified by match to PFAM protein family HMM PF03600; citrate transporter complement(156417..157724) Pseudomonas putida KT2440 1043655 NP_742318.1 CDS PP_0148 NC_002947.3 157989 158393 D hypothetical protein 157989..158393 Pseudomonas putida KT2440 1043656 NP_742319.1 CDS PP_0149 NC_002947.3 158432 160387 R similar to GP:9951796; identified by sequence similarity; hypothetical protein complement(158432..160387) Pseudomonas putida KT2440 1043657 NP_742320.1 CDS PP_0150 NC_002947.3 160384 160704 R hypothetical protein complement(160384..160704) Pseudomonas putida KT2440 1043658 NP_742321.1 CDS PP_0151 NC_002947.3 160741 161034 R similar to GP:9951794; identified by sequence similarity; hypothetical protein complement(160741..161034) Pseudomonas putida KT2440 1043659 NP_742322.1 CDS PP_0152 NC_002947.3 161124 161504 R similar to GP:9951793; identified by sequence similarity; hypothetical protein complement(161124..161504) Pseudomonas putida KT2440 1043661 NP_742323.1 CDS PP_0153 NC_002947.3 161750 161965 R hypothetical protein complement(161750..161965) Pseudomonas putida KT2440 1043664 NP_742324.1 CDS PP_0154 NC_002947.3 162339 163832 R similar to GP:3249555; identified by sequence similarity; acetyl-CoA hydrolase/transferase complement(162339..163832) Pseudomonas putida KT2440 1043665 NP_742325.1 CDS pntB NC_002947.3 164019 165455 R similar to GB:L15189, GB:L11066, GB:D17027, GB:D17196, SP:P38646, and PID:292059; identified by sequence similarity; NAD(P)(+) transhydrogenase complement(164019..165455) Pseudomonas putida KT2440 1043667 NP_742326.1 CDS PP_0157 NC_002947.3 167324 168241 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(167324..168241) Pseudomonas putida KT2440 1043670 NP_742327.1 CDS gcdH NC_002947.3 168402 169583 D identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 168402..169583 Pseudomonas putida KT2440 1043671 NP_742328.1 CDS PP_0159 NC_002947.3 169597 170817 D identified by match to PFAM protein family HMM PF02515; CAIB/BAIF family protein 169597..170817 Pseudomonas putida KT2440 1043672 NP_742329.1 CDS PP_0160 NC_002947.3 182074 184560 R similar to GB:M13295, GB:M13296, GB:M13297, GB:M13298, GB:M13299, SP:P03999, PID:180685, and PID:2138076; identified by sequence similarity; TonB-dependent siderophore receptor complement(182074..184560) Pseudomonas putida KT2440 1043683 NP_742330.1 CDS PP_0161 NC_002947.3 184654 185610 R similar to GP:9948517; identified by sequence similarity; FecR anti-FecI sigma factor complement(184654..185610) Pseudomonas putida KT2440 1043684 NP_742331.1 CDS PP_0162 NC_002947.3 185615 186136 R ECF subfamily RNA polymerase sigma factor complement(185615..186136) Pseudomonas putida KT2440 1043685 NP_742332.1 CDS PP_0163 NC_002947.3 186225 186914 R similar to GP:9947202; identified by sequence similarity; GntR family transcriptional regulator complement(186225..186914) Pseudomonas putida KT2440 1043686 NP_742333.1 CDS PP_0164 NC_002947.3 187239 187880 D hypothetical protein 187239..187880 Pseudomonas putida KT2440 1043687 NP_742334.1 CDS PP_0165 NC_002947.3 187891 189837 D identified by match to PFAM protein family HMM PF00563; diguanylate cyclase 187891..189837 Pseudomonas putida KT2440 1043688 NP_742335.1 CDS PP_0166 NC_002947.3 189994 191370 R identified by match to TIGR protein family HMM TIGR00998; HlyD family type I secretion membrane fusion protein complement(189994..191370) Pseudomonas putida KT2440 1043690 NP_742336.1 CDS PP_0167 NC_002947.3 191360 193516 R identified by match to TIGR protein family HMM TIGR00968; toxin secretion ATP-binding protein complement(191360..193516) Pseudomonas putida KT2440 1043691 NP_742337.1 CDS PP_0168 NC_002947.3 194494 220542 D similar to GP:7741585, and GP:7741585; identified by sequence similarity; surface adhesion protein 194494..220542 Pseudomonas putida KT2440 1043692 NP_742338.1 CDS PP_0169 NC_002947.3 221228 222127 D similar to SP:P10088; identified by sequence similarity; TauD/TfdA family dioxygenase 221228..222127 Pseudomonas putida KT2440 1043693 NP_742339.1 CDS PP_0170 NC_002947.3 222145 223164 D identified by match to PFAM protein family HMM PF04069; ABC transporter substrate-binding protein 222145..223164 Pseudomonas putida KT2440 1043695 NP_742340.1 CDS PP_0171 NC_002947.3 223171 224034 D identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 223171..224034 Pseudomonas putida KT2440 1043696 NP_742341.1 CDS PP_0172 NC_002947.3 224049 224912 D similar to SP:P75851; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 224049..224912 Pseudomonas putida KT2440 1043698 NP_742342.1 CDS PP_0173 NC_002947.3 225030 225659 R similar to GP:6642785; identified by sequence similarity; transcriptional factor-like protein complement(225030..225659) Pseudomonas putida KT2440 1043699 NP_742343.1 CDS PP_0174 NC_002947.3 225774 226592 D similar to GB:L19657, GB:Y00525, PID:459864, and SP:P21484; identified by sequence similarity; Sel1 domain-containing protein repeat-containing protein 225774..226592 Pseudomonas putida KT2440 1043700 NP_742344.1 CDS PP_0175 NC_002947.3 226725 227177 D identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator 226725..227177 Pseudomonas putida KT2440 1043701 NP_742345.1 CDS PP_0176 NC_002947.3 227174 229261 D fusaric acid resistance protein 227174..229261 Pseudomonas putida KT2440 1043702 NP_742346.1 CDS PP_0177 NC_002947.3 229258 229470 D similar to GB:M23114, GB:M23116, GB:M23278, GB:M23115, SP:P16614, SP:P16615, PID:306850, PID:306851, and PID:567108; identified by sequence similarity; hypothetical protein 229258..229470 Pseudomonas putida KT2440 1043703 NP_742347.1 CDS PP_0178 NC_002947.3 229467 230342 D identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 229467..230342 Pseudomonas putida KT2440 1043704 NP_742348.1 CDS PP_0179 NC_002947.3 230339 231757 D identified by match to PFAM protein family HMM PF02321; RND efflux transporter 230339..231757 Pseudomonas putida KT2440 1043705 NP_742349.1 CDS PP_0180 NC_002947.3 231901 233811 D identified by match to PFAM protein family HMM PF03675; cytochrome c family protein 231901..233811 Pseudomonas putida KT2440 1043706 NP_742350.1 CDS PP_0181 NC_002947.3 233874 234119 R hypothetical protein complement(233874..234119) Pseudomonas putida KT2440 1043707 NP_742351.1 CDS PP_0182 NC_002947.3 234189 234491 R hypothetical protein complement(234189..234491) Pseudomonas putida KT2440 1043708 NP_742352.1 CDS PP_0183 NC_002947.3 234640 235302 D similar to GP:3980387; identified by sequence similarity; glutathione S-transferase 234640..235302 Pseudomonas putida KT2440 1043709 NP_742353.1 CDS argH NC_002947.3 235427 236833 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(235427..236833) Pseudomonas putida KT2440 1043710 NP_742354.1 CDS pprA NC_002947.3 237119 237862 D similar to GB:U09067, PID:483876, PID:553456, GB:U09067, PID:483876, and PID:553456; identified by sequence similarity; LytTR family two component transcriptional regulator 237119..237862 Pseudomonas putida KT2440 1043711 NP_742355.1 CDS hemC NC_002947.3 237981 238922 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 237981..238922 Pseudomonas putida KT2440 1043712 NP_742356.1 CDS hemD NC_002947.3 238919 239686 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 238919..239686 Pseudomonas putida KT2440 1043713 NP_742357.1 CDS PP_0188 NC_002947.3 239705 240832 D similar to GB:M55406, SP:Q02505, and PID:553594; identified by sequence similarity; uroporphyrin-III C-methyltransferase 239705..240832 Pseudomonas putida KT2440 1043714 NP_742358.1 CDS hemY NC_002947.3 240829 242067 D similar to GB:J03191, SP:P07737, and PID:190386; identified by sequence similarity; HemY domain-containing protein 240829..242067 Pseudomonas putida KT2440 1043715 NP_742359.1 CDS PP_0190 NC_002947.3 242290 242796 D similar to GB:L07648, GB:S78470, SP:P50539, PID:506627, and PID:976225; identified by sequence similarity; disulfide bond formation protein DsbB 242290..242796 Pseudomonas putida KT2440 1043716 NP_742360.1 CDS pfrA NC_002947.3 243028 243498 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 243028..243498 Pseudomonas putida KT2440 1043717 NP_742361.1 CDS fkl NC_002947.3 243507 244169 R similar to SP:P30417; identified by sequence similarity; peptidyl-prolyl cis-trans isomerase FklB complement(243507..244169) Pseudomonas putida KT2440 1043718 NP_742362.1 CDS PP_0193 NC_002947.3 244185 244286 R hypothetical protein complement(244185..244286) Pseudomonas putida KT2440 1043720 NP_742363.1 CDS algP NC_002947.3 244324 245313 D similar to GB:X15183, GB:M27024, GB:X07270, GB:M30626, SP:P07900, SP:P08238, PID:1620017, PID:1620018, PID:184419, PID:32486, PID:32488, and PID:703087; identified by sequence similarity; alginate regulatory protein AlgP 244324..245313 Pseudomonas putida KT2440 1043721 NP_742364.1 CDS PP_0195 NC_002947.3 245292 245771 R similar to GB:D42053, PID:577309, GB:D42053, and PID:577309; identified by sequence similarity; hypothetical protein complement(245292..245771) Pseudomonas putida KT2440 1043722 NP_742365.1 CDS PP_0196 NC_002947.3 245822 247732 D similar to GB:Y00486, GB:M16446, SP:P07741, PID:178867, and PID:28819; identified by sequence similarity; ABC transporter ATP-binding protein 245822..247732 Pseudomonas putida KT2440 1043723 NP_742366.1 CDS PP_0197 NC_002947.3 247732 248319 D identified by match to PFAM protein family HMM PF03596; hypothetical protein 247732..248319 Pseudomonas putida KT2440 1043724 NP_742367.1 CDS PP_0198 NC_002947.3 248419 249051 D identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 248419..249051 Pseudomonas putida KT2440 1043725 NP_742368.1 CDS PP_0199 NC_002947.3 249100 249846 R identified by match to PFAM protein family HMM PF01145; hypothetical protein complement(249100..249846) Pseudomonas putida KT2440 1043726 NP_742369.1 CDS PP_0200 NC_002947.3 249855 251201 R identified by match to PFAM protein family HMM PF01957; hypothetical protein complement(249855..251201) Pseudomonas putida KT2440 1043728 NP_742370.1 CDS PP_0201 NC_002947.3 251267 251758 D similar to GP:5596803; identified by sequence similarity; prolyl-tRNA synthetase 251267..251758 Pseudomonas putida KT2440 1043729 NP_742371.1 CDS PP_0202 NC_002947.3 252777 253214 R identified by match to PFAM protein family HMM PF00571; hypothetical protein complement(252777..253214) Pseudomonas putida KT2440 1043730 NP_742372.1 CDS PP_0203 NC_002947.3 253385 255115 R similar to GP:436965, and GP:14585845; identified by sequence similarity; hypothetical protein complement(253385..255115) Pseudomonas putida KT2440 1043732 NP_742373.1 CDS PP_0204 NC_002947.3 255568 256317 D similar to GP:9948330; identified by sequence similarity; GntR family transcriptional regulator 255568..256317 Pseudomonas putida KT2440 1043733 NP_742374.1 CDS PP_0205 NC_002947.3 256314 258038 D identified by match to PFAM protein family HMM PF02910; oxidoreductase 256314..258038 Pseudomonas putida KT2440 1043735 NP_742375.1 CDS PP_0206 NC_002947.3 258101 258346 D identified by match to PFAM protein family HMM PF00037; ferredoxin, 4Fe-4S 258101..258346 Pseudomonas putida KT2440 1043740 NP_742376.1 CDS PP_0207 NC_002947.3 258466 259872 D identified by match to TIGR protein family HMM TIGR01729; nitrate ABC transporter substrate-binding protein 258466..259872 Pseudomonas putida KT2440 1043747 NP_742377.1 CDS PP_0208 NC_002947.3 259888 260670 D identified by match to PFAM protein family HMM PF00528; nitrate ABC transporter permease 259888..260670 Pseudomonas putida KT2440 1043748 NP_742378.1 CDS PP_0209 NC_002947.3 260670 261521 D identified by match to PFAM protein family HMM PF00005; nitrate ABC transporter ATP-binding protein 260670..261521 Pseudomonas putida KT2440 1043749 NP_742379.1 CDS PP_0210 NC_002947.3 261518 262483 D similar to SP:P34945; identified by sequence similarity; phycobiliprotein 261518..262483 Pseudomonas putida KT2440 1043750 NP_742380.1 CDS PP_0211 NC_002947.3 262483 262764 D hypothetical protein 262483..262764 Pseudomonas putida KT2440 1043751 NP_742381.1 CDS gabD NC_002947.3 263249 264691 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 263249..264691 Pseudomonas putida KT2440 1043755 NP_742382.1 CDS gabT NC_002947.3 264874 266151 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 264874..266151 Pseudomonas putida KT2440 1043757 NP_742383.1 CDS PP_0215 NC_002947.3 266290 267549 D identified by match to PFAM protein family HMM PF00072; signal transduction protein 266290..267549 Pseudomonas putida KT2440 1043758 NP_742384.1 CDS PP_0216 NC_002947.3 267640 268626 R identified by match to PFAM protein family HMM PF00990; PAS/PAC sensor-containing diguanylate cyclase complement(267640..268626) Pseudomonas putida KT2440 1043759 NP_742385.1 CDS PP_0217 NC_002947.3 268768 269952 R identified by match to PFAM protein family HMM PF00487; fatty acid desaturase complement(268768..269952) Pseudomonas putida KT2440 1043760 NP_742386.1 CDS PP_0218 NC_002947.3 270099 271994 D identified by match to PFAM protein family HMM PF00990; sensory box protein 270099..271994 Pseudomonas putida KT2440 1043761 NP_742387.1 CDS PP_0219 NC_002947.3 272023 272667 R similar to GB:L14542, SP:Q07444, and PID:292361; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein complement(272023..272667) Pseudomonas putida KT2440 1043763 NP_742388.1 CDS PP_0220 NC_002947.3 272657 273766 R identified by match to TIGR protein family HMM TIGR00960; ABC transporter ATP-binding protein complement(272657..273766) Pseudomonas putida KT2440 1043764 NP_742389.1 CDS PP_0221 NC_002947.3 273768 274568 R identified by match to PFAM protein family HMM PF03180; metal ABC transporter substrate-binding protein complement(273768..274568) Pseudomonas putida KT2440 1043765 NP_742390.1 CDS PP_0222 NC_002947.3 274561 275946 R identified by match to TIGR protein family HMM TIGR01409; DszA family monooxygenase complement(274561..275946) Pseudomonas putida KT2440 1043766 NP_742391.1 CDS PP_0223 NC_002947.3 275946 277166 R identified by match to PFAM protein family HMM PF00441; DszC family monooxygenase complement(275946..277166) Pseudomonas putida KT2440 1043767 NP_742392.1 CDS PP_0224 NC_002947.3 277263 278504 R similar to SP:P54998; identified by sequence similarity; DszC family monooxygenase complement(277263..278504) Pseudomonas putida KT2440 1043769 NP_742393.1 CDS PP_0225 NC_002947.3 278818 279576 R similar to GB:M57732, SP:P20823, PID:1708747, and PID:184265; identified by sequence similarity; amino-acid ABC transporter ATP-binding protein YecC complement(278818..279576) Pseudomonas putida KT2440 1043770 NP_742394.1 CDS PP_0226 NC_002947.3 279579 280247 R similar to SP:Q02470, and PID:149582; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit complement(279579..280247) Pseudomonas putida KT2440 1043771 NP_742395.1 CDS PP_0227 NC_002947.3 280244 281038 R similar to SP:P34880; identified by sequence similarity; cystine transporter subunit complement(280244..281038) Pseudomonas putida KT2440 1043773 NP_742396.1 CDS PP_0228 NC_002947.3 281755 282279 D similar to GB:X74794, SP:P33991, and PID:940536; identified by sequence similarity; serine O-acetyltransferase 281755..282279 Pseudomonas putida KT2440 1043774 NP_742397.1 CDS PP_0229 NC_002947.3 282591 284552 D identified by match to TIGR protein family HMM TIGR00842; choline/carnitine/betaine transporter 282591..284552 Pseudomonas putida KT2440 1043777 NP_742398.1 CDS tauD NC_002947.3 284615 285448 R catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase complement(284615..285448) Pseudomonas putida KT2440 1043779 NP_742399.1 CDS tauC NC_002947.3 285497 286336 R similar to GB:X14482, SP:P11796, PID:19693, PID:411152, and PID:411889; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein complement(285497..286336) Pseudomonas putida KT2440 1043784 NP_742400.1 CDS tauB NC_002947.3 286333 287121 R Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit complement(286333..287121) Pseudomonas putida KT2440 1043785 NP_742401.1 CDS tauA NC_002947.3 287135 288106 R similar to SP:Q47537; identified by sequence similarity; taurine ABC transporter substrate-binding protein complement(287135..288106) Pseudomonas putida KT2440 1043786 NP_742402.1 CDS oprE NC_002947.3 288581 289915 D similar to GB:D14812, and PID:285969; identified by sequence similarity; porin 288581..289915 Pseudomonas putida KT2440 1043787 NP_742403.1 CDS lsfA NC_002947.3 290081 290719 D similar to GP:3420603, and GP:3420603; identified by sequence similarity; peroxidase 290081..290719 Pseudomonas putida KT2440 1043789 NP_742404.1 CDS ssuE NC_002947.3 290939 291532 D similar to SP:O85762, and SP:O85762; identified by sequence similarity; NAD(P)H-dependent FMN reductase 290939..291532 Pseudomonas putida KT2440 1043798 NP_742405.1 CDS ssuA NC_002947.3 291618 292583 D similar to GP:3420605; identified by sequence similarity; aliphatic sulfonate ABC transporter substrate-binding protein 291618..292583 Pseudomonas putida KT2440 1043799 NP_742406.1 CDS ssuD NC_002947.3 292643 293791 D catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 292643..293791 Pseudomonas putida KT2440 1043800 NP_742407.1 CDS ssuC NC_002947.3 293802 294599 D similar to GP:3420607; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 293802..294599 Pseudomonas putida KT2440 1043802 NP_742408.1 CDS ssuB NC_002947.3 294596 295408 D part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonate ABC transporter ATP-binding subunit 294596..295408 Pseudomonas putida KT2440 1043803 NP_742409.1 CDS ssuF NC_002947.3 295436 295651 D similar to GP:3420609, and GP:3420609; identified by sequence similarity; TOBE domain-containing protein 295436..295651 Pseudomonas putida KT2440 1043806 NP_742410.1 CDS PP_0242 NC_002947.3 295793 296425 R similar to GP:9946138; identified by sequence similarity; TetR family transcriptional regulator complement(295793..296425) Pseudomonas putida KT2440 1043810 NP_742411.1 CDS gshA NC_002947.3 296425 298002 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(296425..298002) Pseudomonas putida KT2440 1043812 NP_742412.1 CDS PP_0244 NC_002947.3 298156 298539 R similar to GP:9951508; identified by sequence similarity; thioesterase complement(298156..298539) Pseudomonas putida KT2440 1043813 NP_742413.1 CDS PP_0245 NC_002947.3 298539 301124 R identified by match to PFAM protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(298539..301124) Pseudomonas putida KT2440 1043816 NP_742414.1 CDS ompR NC_002947.3 301081 301821 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 301081..301821 Pseudomonas putida KT2440 1043818 NP_742415.1 CDS envZ NC_002947.3 301835 303148 D identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 301835..303148 Pseudomonas putida KT2440 1043819 NP_742416.1 CDS rimK NC_002947.3 303246 304151 R similar to GB:X57130, and PID:296288; identified by sequence similarity; alpha-L-glutamate ligase complement(303246..304151) Pseudomonas putida KT2440 1043821 NP_742417.1 CDS PP_0249 NC_002947.3 304148 304768 R hypothetical protein complement(304148..304768) Pseudomonas putida KT2440 1043823 NP_742418.1 CDS hslR NC_002947.3 304740 305141 D identified by match to PFAM protein family HMM PF01479; RNA-binding S4 domain-containing protein 304740..305141 Pseudomonas putida KT2440 1043825 NP_742419.1 CDS PP_0251 NC_002947.3 305170 305964 R identified by match to PFAM protein family HMM PF01569; hypothetical protein complement(305170..305964) Pseudomonas putida KT2440 1043826 NP_742420.1 CDS hslO NC_002947.3 306085 306984 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 306085..306984 Pseudomonas putida KT2440 1043827 NP_742421.1 CDS PP_0254 NC_002947.3 308852 309292 D identified by match to PFAM protein family HMM PF03061; thioesterase 308852..309292 Pseudomonas putida KT2440 1043830 NP_742422.1 CDS PP_0255 NC_002947.3 309349 309831 R hypothetical protein complement(309349..309831) Pseudomonas putida KT2440 1043833 NP_742423.1 CDS PP_0256 NC_002947.3 310028 312373 R similar to SP:P07658; identified by sequence similarity; molybdopterin oxidoreductase subunit alpha complement(310028..312373) Pseudomonas putida KT2440 1043835 NP_742424.1 CDS PP_0257 NC_002947.3 312379 313209 R similar to GB:X60787, GB:S41456, SP:Q01167, PID:1388160, and PID:33854; identified by sequence similarity; formate dehydrogenase accessory protein FdhD complement(312379..313209) Pseudomonas putida KT2440 1043838 NP_742425.1 CDS PP_0258 NC_002947.3 313385 313825 D identified by match to PFAM protein family HMM PF01476; LysM domain/BON superfamily protein 313385..313825 Pseudomonas putida KT2440 1043839 NP_742426.1 CDS PP_0259 NC_002947.3 313876 314538 R identified by match to PFAM protein family HMM PF00702; HAD superfamily hydrolase complement(313876..314538) Pseudomonas putida KT2440 1043842 NP_742427.1 CDS nudE NC_002947.3 314603 315169 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 314603..315169 Pseudomonas putida KT2440 1043844 NP_742428.1 CDS cysQ NC_002947.3 315184 315984 D similar to SP:P22255; identified by sequence similarity; 3'(2'),5'-bisphosphate nucleotidase 315184..315984 Pseudomonas putida KT2440 1043847 NP_742429.1 CDS PP_0262 NC_002947.3 316067 316522 R similar to GB:Z22971, GB:Z22969, GB:Z22968, PID:312148, GB:Z22971, GB:Z22969, GB:Z22968, and PID:312148; identified by sequence similarity; hypothetical protein complement(316067..316522) Pseudomonas putida KT2440 1043848 NP_742430.1 CDS PP_0263 NC_002947.3 316522 317928 R identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator complement(316522..317928) Pseudomonas putida KT2440 1043849 NP_742431.1 CDS PP_0264 NC_002947.3 317925 319739 R similar to GP:9951467; identified by sequence similarity; sensor histidine kinase complement(317925..319739) Pseudomonas putida KT2440 1043853 NP_742432.1 CDS PP_0265 NC_002947.3 319782 320327 R similar to GP:3135676; identified by sequence similarity; dTDP-4-dehydrorhamnose 3,5-epimerase complement(319782..320327) Pseudomonas putida KT2440 1043858 NP_742433.1 CDS PP_0266 NC_002947.3 320605 321711 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 320605..321711 Pseudomonas putida KT2440 1043859 NP_742434.1 CDS PP_0267 NC_002947.3 322169 324238 R similar to GP:5712714, and GP:5712714; identified by sequence similarity; TonB-dependent siderophore receptor complement(322169..324238) Pseudomonas putida KT2440 1043860 NP_742435.1 CDS oprQ NC_002947.3 324713 326032 D similar to GP:9948840, GB:U00020, and PID:467105; identified by sequence similarity; porin 324713..326032 Pseudomonas putida KT2440 1043863 NP_742436.1 CDS PP_0269 NC_002947.3 326063 327730 R similar to SP:P35646, GB:Z12609, and PID:41331; identified by sequence similarity; glutamate synthase, large subunit complement(326063..327730) Pseudomonas putida KT2440 1043865 NP_742437.1 CDS PP_0270 NC_002947.3 327880 329247 R identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase complement(327880..329247) Pseudomonas putida KT2440 1043866 NP_742438.1 CDS gltR-1 NC_002947.3 329249 329968 R similar to GB:L10328, SP:P26218, PID:290568, GB:L10328, SP:P26218, and PID:290568; identified by sequence similarity; winged helix family two component transcriptional regulator complement(329249..329968) Pseudomonas putida KT2440 1043867 NP_742439.1 CDS PP_0272 NC_002947.3 330109 332406 D similar to SP:P48632; identified by sequence similarity; TonB-dependent siderophore receptor 330109..332406 Pseudomonas putida KT2440 1043868 NP_742440.1 CDS PP_0273 NC_002947.3 332472 332684 R similar to GP:9946035, and GP:9946035; identified by sequence similarity; hypothetical protein complement(332472..332684) Pseudomonas putida KT2440 1043869 NP_742441.1 CDS PP_0274 NC_002947.3 333189 333728 D identified by match to PFAM protein family HMM PF01381; helix-turn-helix domain-containing protein 333189..333728 Pseudomonas putida KT2440 1043873 NP_742442.1 CDS PP_0275 NC_002947.3 334148 334363 D similar to GP:6960288; identified by sequence similarity; hypothetical protein 334148..334363 Pseudomonas putida KT2440 1043875 NP_742443.1 CDS PP_0276 NC_002947.3 334360 334683 R similar to GP:6960297; identified by sequence similarity; Cro/CI family transcriptional regulator complement(334360..334683) Pseudomonas putida KT2440 1043882 NP_742444.1 CDS PP_0277 NC_002947.3 335145 335393 R hypothetical protein complement(335145..335393) Pseudomonas putida KT2440 1043883 NP_742445.1 CDS PP_0278 NC_002947.3 335914 336150 D hypothetical protein 335914..336150 Pseudomonas putida KT2440 1043886 NP_742446.1 CDS PP_0279 NC_002947.3 336543 337748 R hypothetical protein complement(336543..337748) Pseudomonas putida KT2440 1043887 NP_742447.1 CDS PP_0280 NC_002947.3 337877 338566 R similar to GP:2668597; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit complement(337877..338566) Pseudomonas putida KT2440 1043890 NP_742448.1 CDS PP_0281 NC_002947.3 338566 339258 R similar to GB:L03840, GB:M59373, SP:P22455, PID:182571, PID:186621, and PID:31372; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit complement(338566..339258) Pseudomonas putida KT2440 1043892 NP_742449.1 CDS PP_0282 NC_002947.3 339313 340065 R identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein complement(339313..340065) Pseudomonas putida KT2440 1043897 NP_742450.1 CDS PP_0283 NC_002947.3 340077 340850 R similar to GP:9951453; identified by sequence similarity; amino acid ABC transporter ATP-binding protein complement(340077..340850) Pseudomonas putida KT2440 1043898 NP_742451.1 CDS PP_0284 NC_002947.3 341482 342867 D similar to GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; GABA permease 341482..342867 Pseudomonas putida KT2440 1043911 NP_742452.1 CDS PP_0285 NC_002947.3 344264 344536 R hypothetical protein complement(344264..344536) Pseudomonas putida KT2440 1043930 NP_742453.1 CDS mutY NC_002947.3 344533 345600 R similar to GB:M63959, GB:U06976, SP:P30533, PID:1235526, PID:177874, and PID:463882; identified by sequence similarity; A/G-specific adenine glycosylase complement(344533..345600) Pseudomonas putida KT2440 1043933 NP_742454.1 CDS PP_0287 NC_002947.3 345597 347843 R AsmA family protein complement(345597..347843) Pseudomonas putida KT2440 1043936 NP_742455.1 CDS PP_0288 NC_002947.3 348112 349773 D similar to GB:X74567, SP:P42214, SP:P42501, PID:397405, and PID:455023; identified by sequence similarity; major facilitator superfamily protein 348112..349773 Pseudomonas putida KT2440 1043954 NP_742456.1 CDS hisB NC_002947.3 349953 350585 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 349953..350585 Pseudomonas putida KT2440 1043974 NP_742457.1 CDS hisH NC_002947.3 350586 351224 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 350586..351224 Pseudomonas putida KT2440 1043975 NP_742458.1 CDS PP_0291 NC_002947.3 351225 351485 D hypothetical protein 351225..351485 Pseudomonas putida KT2440 1043977 NP_742459.1 CDS hisA NC_002947.3 351513 352250 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 351513..352250 Pseudomonas putida KT2440 1043978 NP_742460.1 CDS hisF NC_002947.3 352261 353031 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 352261..353031 Pseudomonas putida KT2440 1043980 NP_742461.1 CDS PP_0294 NC_002947.3 353149 354327 R identified by match to PFAM protein family HMM PF03603; glycine betaine/L-proline ABC transporter ATP-binding subunit complement(353149..354327) Pseudomonas putida KT2440 1043981 NP_742462.1 CDS PP_0295 NC_002947.3 354324 355169 R identified by match to TIGR protein family HMM TIGR01183; glycine betaine/L-proline ABC transporter permease complement(354324..355169) Pseudomonas putida KT2440 1043983 NP_742463.1 CDS PP_0296 NC_002947.3 355254 356201 R identified by match to PFAM protein family HMM PF04069; glycine/betaine ABC transporter substrate-binding protein complement(355254..356201) Pseudomonas putida KT2440 1043984 NP_742464.1 CDS sda-1 NC_002947.3 356654 358030 D similar to SP:P42630; identified by sequence similarity; L-serine dehydratase 356654..358030 Pseudomonas putida KT2440 1043986 NP_742465.1 CDS PP_0298 NC_002947.3 358532 359638 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 358532..359638 Pseudomonas putida KT2440 1043988 NP_742466.1 CDS PP_0299 NC_002947.3 359758 360216 R hypothetical protein complement(359758..360216) Pseudomonas putida KT2440 1043989 NP_742467.1 CDS PP_0300 NC_002947.3 360348 361934 D identified by match to PFAM protein family HMM PF02051; metallopeptidase 360348..361934 Pseudomonas putida KT2440 1043990 NP_742468.1 CDS PP_0301 NC_002947.3 362034 362504 R hypothetical protein complement(362034..362504) Pseudomonas putida KT2440 1043992 NP_742469.1 CDS PP_0302 NC_002947.3 362515 363480 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(362515..363480) Pseudomonas putida KT2440 1043993 NP_742470.1 CDS PP_0303 NC_002947.3 363647 364531 R similar to GP:9951711, and GP:9951711; identified by sequence similarity; hypothetical protein complement(363647..364531) Pseudomonas putida KT2440 1043994 NP_742471.1 CDS PP_0304 NC_002947.3 364655 365623 R identified by match to PFAM protein family HMM PF04069; hypothetical protein complement(364655..365623) Pseudomonas putida KT2440 1043995 NP_742472.1 CDS PP_0305 NC_002947.3 365732 366691 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 365732..366691 Pseudomonas putida KT2440 1043996 NP_742473.1 CDS PP_0306 NC_002947.3 367386 368114 R hypothetical protein complement(367386..368114) Pseudomonas putida KT2440 1043999 NP_742474.1 CDS PP_0307 NC_002947.3 368217 368648 R similar to GB:M86752, SP:P31948, and PID:184565; identified by sequence similarity; hypothetical protein complement(368217..368648) Pseudomonas putida KT2440 1044000 NP_742475.1 CDS PP_0308 NC_002947.3 368919 369896 D identified by match to PFAM protein family HMM PF01244; membrane dipeptidase 368919..369896 Pseudomonas putida KT2440 1044001 NP_742476.1 CDS PP_0309 NC_002947.3 369972 370502 D hypothetical protein 369972..370502 Pseudomonas putida KT2440 1044002 NP_742477.1 CDS PP_0310 NC_002947.3 370518 372578 D identified by match to TIGR protein family HMM TIGR01317; FMN-binding oxidoreductase 370518..372578 Pseudomonas putida KT2440 1044003 NP_742478.1 CDS PP_0311 NC_002947.3 372757 374709 D identified by match to PFAM protein family HMM PF02754; (Fe-S)-binding protein 372757..374709 Pseudomonas putida KT2440 1044006 NP_742479.1 CDS PP_0312 NC_002947.3 374955 375941 D identified by match to PFAM protein family HMM PF00766; electron transfer flavoprotein subunit alpha 374955..375941 Pseudomonas putida KT2440 1044007 NP_742480.1 CDS PP_0313 NC_002947.3 375952 376722 D identified by match to PFAM protein family HMM PF01012; electron transfer flavoprotein subunit beta 375952..376722 Pseudomonas putida KT2440 1044008 NP_742481.1 CDS PP_0314 NC_002947.3 377324 378055 D similar to GP:2950328; identified by sequence similarity; hypothetical protein 377324..378055 Pseudomonas putida KT2440 1044009 NP_742482.1 CDS PP_0315 NC_002947.3 378120 379412 R identified by match to PFAM protein family HMM PF00355; Rieske (2Fe-2S) domain-containing protein complement(378120..379412) Pseudomonas putida KT2440 1044010 NP_742483.1 CDS PP_0316 NC_002947.3 379702 380808 D similar to GP:9951737; identified by sequence similarity; oxidoreductase FAD-binding domain-containing protein 379702..380808 Pseudomonas putida KT2440 1044011 NP_742484.1 CDS PP_0317 NC_002947.3 380917 382542 R similar to GP:9947573; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer complement(380917..382542) Pseudomonas putida KT2440 1044012 NP_742485.1 CDS PP_0318 NC_002947.3 382809 383039 D hypothetical protein 382809..383039 Pseudomonas putida KT2440 1044013 NP_742486.1 CDS PP_0319 NC_002947.3 383036 383338 D hypothetical protein 383036..383338 Pseudomonas putida KT2440 1044014 NP_742487.1 CDS PP_0320 NC_002947.3 383521 385458 D identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 383521..385458 Pseudomonas putida KT2440 1044017 NP_742488.1 CDS PP_0321 NC_002947.3 385493 386533 R similar to GP:2865134, and GP:2865134; identified by sequence similarity; threonine aldolase complement(385493..386533) Pseudomonas putida KT2440 1044018 NP_742489.1 CDS glyA-1 NC_002947.3 386859 388112 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 386859..388112 Pseudomonas putida KT2440 1044019 NP_742490.1 CDS soxB NC_002947.3 388128 389378 D similar to SP:P40875; identified by sequence similarity; sarcosine oxidase subunit beta 388128..389378 Pseudomonas putida KT2440 1044020 NP_742491.1 CDS soxD NC_002947.3 389393 389728 D similar to GP:9951744, GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; sarcosine oxidase subunit delta 389393..389728 Pseudomonas putida KT2440 1044022 NP_742492.1 CDS soxA NC_002947.3 389725 392739 D similar to GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; sarcosine oxidase subunit alpha 389725..392739 Pseudomonas putida KT2440 1044023 NP_742493.1 CDS soxG NC_002947.3 392814 393446 D similar to GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; sarcosine oxidase subunit gamma 392814..393446 Pseudomonas putida KT2440 1044024 NP_742494.1 CDS purU-1 NC_002947.3 393458 394315 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 393458..394315 Pseudomonas putida KT2440 1044026 NP_742495.1 CDS fdhA NC_002947.3 394617 395816 D similar to SP:P46154, GB:X64318, GB:U26173, GB:S79880, PID:1237118, and PID:30956; identified by sequence similarity; formaldehyde dehydrogenase 394617..395816 Pseudomonas putida KT2440 1044027 NP_742496.1 CDS PP_0329 NC_002947.3 396020 396943 R hypothetical protein complement(396020..396943) Pseudomonas putida KT2440 1044028 NP_742497.1 CDS PP_0330 NC_002947.3 396918 397712 D hypothetical protein 396918..397712 Pseudomonas putida KT2440 1044029 NP_742498.1 CDS PP_0331 NC_002947.3 397733 398482 R hypothetical protein complement(397733..398482) Pseudomonas putida KT2440 1044030 NP_742499.1 CDS PP_0332 NC_002947.3 398694 399581 R identified by match to TIGR protein family HMM TIGR00530; acyltransferase complement(398694..399581) Pseudomonas putida KT2440 1044031 NP_742500.1 CDS PP_0333 NC_002947.3 399763 400263 D similar to GP:9946323, and GP:9946323; identified by sequence similarity; hypothetical protein 399763..400263 Pseudomonas putida KT2440 1044032 NP_742501.1 CDS PP_0334 NC_002947.3 400413 401471 D similar to GB:X66899, GB:X72990, GB:X72991, GB:X72992, GB:X72993, GB:X72994, GB:X72995, GB:X72996, GB:X72997, GB:X72998, GB:X72999, GB:X73000, GB:X73001, GB:X73002, GB:X73003, GB:X73004, SP:Q01844, PID:1572086, PID:1666068, PID:31280, and PID:825654; identified by sequence similarity; ISPpu11, transposase 400413..401471 Pseudomonas putida KT2440 1044035 NP_742502.1 CDS PP_0335 NC_002947.3 401901 402524 R identified by match to TIGR protein family HMM TIGR01262; glutathione S-transferase complement(401901..402524) Pseudomonas putida KT2440 1044036 NP_742503.1 CDS msrA NC_002947.3 402528 403196 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(402528..403196) Pseudomonas putida KT2440 1044038 NP_742504.1 CDS PP_0337 NC_002947.3 403365 406055 R identified by match to PFAM protein family HMM PF00990; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(403365..406055) Pseudomonas putida KT2440 1044039 NP_742505.1 CDS aceF NC_002947.3 406363 408003 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase complement(406363..408003) Pseudomonas putida KT2440 1044041 NP_742506.1 CDS aceE NC_002947.3 408017 410662 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(408017..410662) Pseudomonas putida KT2440 1044044 NP_742507.1 CDS glnE NC_002947.3 411046 413979 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 411046..413979 Pseudomonas putida KT2440 1044045 NP_742508.1 CDS waaF NC_002947.3 414182 415231 D similar to GB:M19116, PID:142133, GB:X04500, GB:M15330, GB:K02770, GB:M54933, GB:X02532, GB:X56087, GB:X52431, GB:M15840, SP:P01584, PID:186288, PID:307043, PID:307045, PID:312408, PID:33790, PID:35663, and PID:386816; identified by sequence similarity; lipopolysaccharide heptosyltransferase II 414182..415231 Pseudomonas putida KT2440 1044046 NP_742509.1 CDS waaC NC_002947.3 415232 416290 D similar to GB:L13203, SP:Q12951, PID:1911185, and PID:563168; identified by sequence similarity; lipopolysaccharide heptosyltransferase I 415232..416290 Pseudomonas putida KT2440 1044047 NP_742510.1 CDS waaG NC_002947.3 416290 417414 D identified by match to PFAM protein family HMM PF00534; lipopolysaccharide core biosynthesis protein WaaG 416290..417414 Pseudomonas putida KT2440 1044049 NP_742511.1 CDS waaP NC_002947.3 417411 418217 D similar to GP:4210950; identified by sequence similarity; lipopolysaccharide kinase 417411..418217 Pseudomonas putida KT2440 1044050 NP_742512.1 CDS PP_0345 NC_002947.3 418217 418951 D lipopolysaccharide kinase 418217..418951 Pseudomonas putida KT2440 1044051 NP_742513.1 CDS PP_0346 NC_002947.3 418948 419700 D similar to GP:4323000; identified by sequence similarity; lipopolysaccharide kinase 418948..419700 Pseudomonas putida KT2440 1044052 NP_742514.1 CDS PP_0347 NC_002947.3 419700 421142 D hypothetical protein 419700..421142 Pseudomonas putida KT2440 1044053 NP_742515.1 CDS PP_0348 NC_002947.3 421160 423946 R hypothetical protein complement(421160..423946) Pseudomonas putida KT2440 1044054 NP_742516.1 CDS PP_0349 NC_002947.3 424196 425308 R identified by match to PFAM protein family HMM PF03929; PepSY-associated TM helix domain-containing protein complement(424196..425308) Pseudomonas putida KT2440 1044056 NP_742517.1 CDS PP_0350 NC_002947.3 425365 427797 R similar to GB:M31516, GB:M30142, SP:P08174, and PID:181476; identified by sequence similarity; TonB-dependent siderophore receptor complement(425365..427797) Pseudomonas putida KT2440 1044057 NP_742518.1 CDS PP_0351 NC_002947.3 428049 429005 R FecR anti-FecI sigma factor complement(428049..429005) Pseudomonas putida KT2440 1044058 NP_742519.1 CDS PP_0352 NC_002947.3 429002 429520 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor complement(429002..429520) Pseudomonas putida KT2440 1044059 NP_742520.1 CDS PP_0353 NC_002947.3 429668 430378 R identified by match to TIGR protein family HMM TIGR00573; DNA polymerase III subunit epsilon complement(429668..430378) Pseudomonas putida KT2440 1044060 NP_742521.1 CDS PP_0354 NC_002947.3 430375 432312 R similar to GB:K00431, SP:P02929, PID:148023, PID:902383, PID:902392, PID:902401, PID:902410, PID:902419, PID:902428, PID:902437, PID:902446, PID:902455, PID:902464, PID:902473, PID:902482, GB:U00096, PID:1742041, and PID:1787505; identified by sequence similarity; hypothetical protein complement(430375..432312) Pseudomonas putida KT2440 1044061 NP_742522.1 CDS PP_0355 NC_002947.3 432405 432974 D similar to GB:X74448, and SP:P43448; identified by sequence similarity; response regulator receiver protein 432405..432974 Pseudomonas putida KT2440 1044062 NP_742523.1 CDS glcB NC_002947.3 433021 435198 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(433021..435198) Pseudomonas putida KT2440 1044063 NP_742524.1 CDS PP_0357 NC_002947.3 435648 436166 D identified by match to PFAM protein family HMM PF01842; ACT domain-containing protein 435648..436166 Pseudomonas putida KT2440 1044064 NP_742525.1 CDS rarD-1 NC_002947.3 436399 437286 R similar to SP:P27844, GB:X74448, and SP:P43448; identified by sequence similarity; RarD protein, DMT superfamily transporter complement(436399..437286) Pseudomonas putida KT2440 1044065 NP_742526.1 CDS PP_0359 NC_002947.3 437351 438358 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(437351..438358) Pseudomonas putida KT2440 1044066 NP_742527.1 CDS modR NC_002947.3 438424 439188 R identified by match to PFAM protein family HMM PF02573; ModE family transcriptional regulator complement(438424..439188) Pseudomonas putida KT2440 1044067 NP_742528.1 CDS PP_0361 NC_002947.3 439238 439969 R similar to GP:5921548, and GP:5921548; identified by sequence similarity; competence protein ComF complement(439238..439969) Pseudomonas putida KT2440 1044068 NP_742529.1 CDS bioB NC_002947.3 440059 441117 D similar to GB:L05091, GB:U58682, SP:P25112, PID:1518637, and PID:337403; identified by sequence similarity; biotin synthase 440059..441117 Pseudomonas putida KT2440 1044069 NP_742530.1 CDS bioF NC_002947.3 441119 442291 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 441119..442291 Pseudomonas putida KT2440 1044070 NP_742531.1 CDS bioH NC_002947.3 442284 443015 D identified by match to TIGR protein family HMM TIGR01738; carboxylesterase 442284..443015 Pseudomonas putida KT2440 1044071 NP_742532.1 CDS bioC NC_002947.3 443008 443826 D similar to GB:M57707, GB:M38258, SP:P13631, SP:P22932, PID:190868, PID:190872, and PID:306887; identified by sequence similarity; biotin biosynthesis protein BioC 443008..443826 Pseudomonas putida KT2440 1044072 NP_742533.1 CDS bioD NC_002947.3 443837 444517 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 443837..444517 Pseudomonas putida KT2440 1044073 NP_742534.1 CDS PP_0367 NC_002947.3 444691 445026 D similar to GP:9946369, and GP:9946369; identified by sequence similarity; hypothetical protein 444691..445026 Pseudomonas putida KT2440 1044075 NP_742535.1 CDS PP_0368 NC_002947.3 445314 447119 D identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 445314..447119 Pseudomonas putida KT2440 1044076 NP_742536.1 CDS PP_0369 NC_002947.3 447502 448704 D identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 447502..448704 Pseudomonas putida KT2440 1044078 NP_742537.1 CDS PP_0370 NC_002947.3 448829 450607 D identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 448829..450607 Pseudomonas putida KT2440 1044079 NP_742538.1 CDS PP_0371 NC_002947.3 450948 451871 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(450948..451871) Pseudomonas putida KT2440 1044080 NP_742539.1 CDS PP_0372 NC_002947.3 452082 453362 D similar to SP:P18335; identified by sequence similarity; class III aminotransferase 452082..453362 Pseudomonas putida KT2440 1044081 NP_742540.1 CDS PP_0373 NC_002947.3 453510 453668 D similar to SP:Q05067, and PID:289135; identified by sequence similarity; hypothetical protein 453510..453668 Pseudomonas putida KT2440 1044082 NP_742541.1 CDS PP_0374 NC_002947.3 454297 454455 D hypothetical protein 454297..454455 Pseudomonas putida KT2440 1044083 NP_742542.1 CDS PP_0375 NC_002947.3 454815 456653 R identified by match to TIGR protein family HMM TIGR01738; prolyl oligopeptidase complement(454815..456653) Pseudomonas putida KT2440 1044084 NP_742543.1 CDS pqqE NC_002947.3 456619 457749 R similar to GB:L19999, GB:L19955, GB:X84654, GB:L15346, GB:U72196, SP:P50224, SP:P50225, SP:P50226, PID:1314740, PID:1575788, PID:179042, PID:1907312, PID:306455, PID:307343, PID:488285, PID:495487, PID:553649, PID:671534, PID:671642, PID:736379, PID:758595, PID:758597, PID:847763, PID:881503, and PID:881505; identified by sequence similarity; pyrroloquinoline quinone biosynthesis protein PqqE complement(456619..457749) Pseudomonas putida KT2440 1044086 NP_742544.1 CDS pqqD NC_002947.3 457751 458026 R with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD complement(457751..458026) Pseudomonas putida KT2440 1044087 NP_742545.1 CDS pqqC NC_002947.3 458023 458778 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(458023..458778) Pseudomonas putida KT2440 1044088 NP_742546.1 CDS pqqB NC_002947.3 458942 459853 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(458942..459853) Pseudomonas putida KT2440 1044089 NP_742547.1 CDS pqqA NC_002947.3 459932 460003 R Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme; coenzyme PQQ synthesis protein PqqA complement(459932..460003) Pseudomonas putida KT2440 1044090 NP_742548.1 CDS pqqF NC_002947.3 460163 462463 R similar to GB:U09073, GB:U09074, PID:483888, PID:483890, PID:483904, GB:U09073, GB:U09074, PID:483888, PID:483890, and PID:483904; identified by sequence similarity; coenzyme PQQ biosynthesis protein PqqF complement(460163..462463) Pseudomonas putida KT2440 1044091 NP_742549.1 CDS PP_0382 NC_002947.3 462604 463398 R similar to GB:X51518, SP:P15107, and PID:65259; identified by sequence similarity; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(462604..463398) Pseudomonas putida KT2440 1044092 NP_742550.1 CDS PP_0383 NC_002947.3 463413 465095 R similar to GP:7209214, GB:M27389, PID:2218046, PID:292791, and PID:975615; identified by sequence similarity; amine oxidase complement(463413..465095) Pseudomonas putida KT2440 1044093 NP_742551.1 CDS PP_0384 NC_002947.3 465349 465810 R similar to GB:X64062, SP:Q00637, PID:1335657, and PID:409457; identified by sequence similarity; AsnC family transcriptional regulator complement(465349..465810) Pseudomonas putida KT2440 1044094 NP_742552.1 CDS PP_0385 NC_002947.3 465998 466552 D similar to GP:6009396; identified by sequence similarity; hypothetical protein 465998..466552 Pseudomonas putida KT2440 1044095 NP_742553.1 CDS PP_0386 NC_002947.3 467212 470955 R identified by match to PFAM protein family HMM PF03466; sensory box protein complement(467212..470955) Pseudomonas putida KT2440 1044096 NP_742554.1 CDS rpoD NC_002947.3 471083 472933 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(471083..472933) Pseudomonas putida KT2440 1044097 NP_742555.1 CDS dnaG NC_002947.3 473001 474983 R synthesizes RNA primers at the replication forks; DNA primase complement(473001..474983) Pseudomonas putida KT2440 1044100 NP_742556.1 CDS rpsU NC_002947.3 475288 475503 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(475288..475503) Pseudomonas putida KT2440 1044101 NP_742557.1 CDS gcp NC_002947.3 475708 476733 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 475708..476733 Pseudomonas putida KT2440 1044102 NP_742558.1 CDS PP_0391 NC_002947.3 476751 477320 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY complement(476751..477320) Pseudomonas putida KT2440 1044103 NP_742559.1 CDS folB NC_002947.3 477395 477751 D similar to SP:P31055; identified by sequence similarity; dihydroneopterin aldolase 477395..477751 Pseudomonas putida KT2440 1044104 NP_742560.1 CDS folK-1 NC_002947.3 477742 478251 D similar to SP:O66550; identified by sequence similarity; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 477742..478251 Pseudomonas putida KT2440 1044106 NP_742561.1 CDS cca NC_002947.3 478361 479467 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(478361..479467) Pseudomonas putida KT2440 1044107 NP_742562.1 CDS PP_0395 NC_002947.3 479523 481091 R identified by match to PFAM protein family HMM PF04293; SpoVR family protein complement(479523..481091) Pseudomonas putida KT2440 1044108 NP_742563.1 CDS PP_0396 NC_002947.3 481088 482410 R identified by match to PFAM protein family HMM PF04285; hypothetical protein complement(481088..482410) Pseudomonas putida KT2440 1044110 NP_742564.1 CDS PP_0397 NC_002947.3 482515 484437 R serine protein kinase PrkA complement(482515..484437) Pseudomonas putida KT2440 1044111 NP_742565.1 CDS glpE NC_002947.3 484720 485052 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(484720..485052) Pseudomonas putida KT2440 1044112 NP_742566.1 CDS apaH NC_002947.3 485067 485933 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(485067..485933) Pseudomonas putida KT2440 1044113 NP_742567.1 CDS apaG NC_002947.3 485933 486313 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(485933..486313) Pseudomonas putida KT2440 1044114 NP_742568.1 CDS ksgA NC_002947.3 486511 487314 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(486511..487314) Pseudomonas putida KT2440 1044115 NP_742569.1 CDS pdxA NC_002947.3 487311 488300 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(487311..488300) Pseudomonas putida KT2440 1044116 NP_742570.1 CDS surA NC_002947.3 488297 489616 R similar to GB:J03278, GB:M30493, SP:P09619, PID:189730, PID:189732, PID:2107947, and PID:532593; identified by sequence similarity; survival protein SurA complement(488297..489616) Pseudomonas putida KT2440 1044118 NP_742571.1 CDS PP_0405 NC_002947.3 492549 493568 D similar to GP:4545243, and GP:4545243; identified by sequence similarity; aminoglycoside phosphotransferase 492549..493568 Pseudomonas putida KT2440 1044120 NP_742572.1 CDS PP_0406 NC_002947.3 493565 494236 D similar to GP:4545244; identified by sequence similarity; nucleotidyl transferase 493565..494236 Pseudomonas putida KT2440 1044121 NP_742573.1 CDS djlA NC_002947.3 494238 495005 D similar to GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, and PID:576683; identified by sequence similarity; molecular chaperone DnaJ 494238..495005 Pseudomonas putida KT2440 1044124 NP_742574.1 CDS PP_0408 NC_002947.3 495033 496031 R identified by match to PFAM protein family HMM PF00070; hypothetical protein complement(495033..496031) Pseudomonas putida KT2440 1044128 NP_742575.1 CDS PP_0409 NC_002947.3 496127 498514 D identified by match to TIGR protein family HMM TIGR00229; PAS/PAC sensor signal transduction histidine kinase 496127..498514 Pseudomonas putida KT2440 1044129 NP_742576.1 CDS uhpA NC_002947.3 498525 499154 D similar to GB:X64624, SP:Q01851, PID:35915, PID:508494, and PID:602106; identified by sequence similarity; LuxR family transcriptional regulator 498525..499154 Pseudomonas putida KT2440 1044130 NP_742577.1 CDS PP_0411 NC_002947.3 499450 500574 D identified by match to TIGR protein family HMM TIGR00968; spermidine/putrescine ABC transporter ATPase 499450..500574 Pseudomonas putida KT2440 1044131 NP_742578.1 CDS PP_0412 NC_002947.3 500615 501649 D identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 500615..501649 Pseudomonas putida KT2440 1044134 NP_742579.1 CDS PP_0413 NC_002947.3 501710 502957 D identified by match to TIGR protein family HMM TIGR01581; binding-protein-dependent transport system inner membrane protein 501710..502957 Pseudomonas putida KT2440 1044135 NP_742580.1 CDS PP_0414 NC_002947.3 502968 503795 D identified by match to TIGR protein family HMM TIGR01095; binding-protein-dependent transport system inner membrane protein 502968..503795 Pseudomonas putida KT2440 1044136 NP_742581.1 CDS rpe NC_002947.3 503853 504620 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 503853..504620 Pseudomonas putida KT2440 1044137 NP_742582.1 CDS gph NC_002947.3 504617 505435 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 504617..505435 Pseudomonas putida KT2440 1044138 NP_742583.1 CDS trpE NC_002947.3 505505 506986 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 505505..506986 Pseudomonas putida KT2440 1044140 NP_742584.1 CDS PP_0418 NC_002947.3 507119 509008 R similar to GB:L19158, GB:D26443, GB:U03504, GB:Z31713, SP:P43003, PID:487339, PID:607113, PID:825504, and PID:825663; identified by sequence similarity; GDSL family lipase complement(507119..509008) Pseudomonas putida KT2440 1044141 NP_742585.1 CDS PP_0419 NC_002947.3 509142 509240 D hypothetical protein 509142..509240 Pseudomonas putida KT2440 1044143 NP_742586.1 CDS trpG NC_002947.3 509376 509969 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 509376..509969 Pseudomonas putida KT2440 1044144 NP_742587.1 CDS trpD NC_002947.3 509979 511028 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 509979..511028 Pseudomonas putida KT2440 1044145 NP_742588.1 CDS trpC NC_002947.3 511025 511858 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 511025..511858 Pseudomonas putida KT2440 1044149 NP_742589.1 CDS PP_0423 NC_002947.3 512006 512710 D identified by match to PFAM protein family HMM PF03099; hypothetical protein 512006..512710 Pseudomonas putida KT2440 1044151 NP_742590.1 CDS crp NC_002947.3 512707 513351 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(512707..513351) Pseudomonas putida KT2440 1044152 NP_742591.1 CDS PP_0425 NC_002947.3 513542 513964 D similar to GB:L32172, PID:476013, GB:L32172, and PID:476013; identified by sequence similarity; OsmC family protein 513542..513964 Pseudomonas putida KT2440 1044153 NP_742592.1 CDS PP_0426 NC_002947.3 514041 515081 R similar to GB:L37080, SP:P49326, PID:559046, PID:623242, GB:L37080, SP:P49326, PID:559046, and PID:623242; identified by sequence similarity; hypothetical protein complement(514041..515081) Pseudomonas putida KT2440 1044155 NP_742593.1 CDS PP_0427 NC_002947.3 515092 515739 R identified by match to PFAM protein family HMM PF03232; hypothetical protein complement(515092..515739) Pseudomonas putida KT2440 1044156 NP_742594.1 CDS PP_0428 NC_002947.3 515805 516143 R identified by match to PFAM protein family HMM PF01230; histidine triad (HIT) protein complement(515805..516143) Pseudomonas putida KT2440 1044157 NP_742595.1 CDS PP_0429 NC_002947.3 516207 516989 R identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(516207..516989) Pseudomonas putida KT2440 1044158 NP_742596.1 CDS PP_0430 NC_002947.3 517057 518013 R identified by match to PFAM protein family HMM PF03060; hypothetical protein complement(517057..518013) Pseudomonas putida KT2440 1044160 NP_742597.1 CDS PP_0431 NC_002947.3 518042 518467 R identified by match to PFAM protein family HMM PF03653; hypothetical protein complement(518042..518467) Pseudomonas putida KT2440 1044163 NP_742598.1 CDS argC NC_002947.3 518610 519644 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 518610..519644 Pseudomonas putida KT2440 1044164 NP_742599.1 CDS PP_0433 NC_002947.3 519744 520142 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 519744..520142 Pseudomonas putida KT2440 1044165 NP_742600.1 CDS anmK NC_002947.3 520202 521293 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(520202..521293) Pseudomonas putida KT2440 1044166 NP_742601.1 CDS PP_0435 NC_002947.3 521297 522724 R identified by match to PFAM protein family HMM PF04225; M24/M37 family peptidase complement(521297..522724) Pseudomonas putida KT2440 1044168 NP_742602.1 CDS tyrS NC_002947.3 522932 524131 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 522932..524131 Pseudomonas putida KT2440 1044169 NP_742603.1 CDS birA NC_002947.3 530085 531044 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 530085..531044 Pseudomonas putida KT2440 1044177 NP_742604.1 CDS PP_0438 NC_002947.3 531034 531783 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 531034..531783 Pseudomonas putida KT2440 1044178 NP_742605.1 CDS PP_0439 NC_002947.3 531752 532216 D hypothetical protein 531752..532216 Pseudomonas putida KT2440 1044179 NP_742606.1 CDS tuf NC_002947.3 532734 533927 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 532734..533927 Pseudomonas putida KT2440 1044182 NP_742607.1 CDS secE NC_002947.3 534102 534470 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 534102..534470 Pseudomonas putida KT2440 1044184 NP_742608.1 CDS nusG NC_002947.3 534480 535013 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 534480..535013 Pseudomonas putida KT2440 1044185 NP_742609.1 CDS rplK NC_002947.3 535133 535564 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 535133..535564 Pseudomonas putida KT2440 1044186 NP_742610.1 CDS rplA NC_002947.3 535564 536259 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 535564..536259 Pseudomonas putida KT2440 1044187 NP_742611.1 CDS rplJ NC_002947.3 536457 536957 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 536457..536957 Pseudomonas putida KT2440 1044188 NP_742612.1 CDS rplL NC_002947.3 537035 537400 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 537035..537400 Pseudomonas putida KT2440 1044189 NP_742613.1 CDS rpoB NC_002947.3 537621 541694 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 537621..541694 Pseudomonas putida KT2440 1044190 NP_742614.1 CDS rpoC NC_002947.3 541759 545958 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 541759..545958 Pseudomonas putida KT2440 1044191 NP_742615.1 CDS rpsL NC_002947.3 546170 546541 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 546170..546541 Pseudomonas putida KT2440 1044192 NP_742616.1 CDS rpsG NC_002947.3 546648 547118 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 546648..547118 Pseudomonas putida KT2440 1044193 NP_742617.1 CDS fusA NC_002947.3 547149 549296 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 547149..549296 Pseudomonas putida KT2440 1044195 NP_742618.1 CDS tuf NC_002947.3 549324 550517 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 549324..550517 Pseudomonas putida KT2440 1044196 NP_742619.1 CDS rpsJ NC_002947.3 550659 550970 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 550659..550970 Pseudomonas putida KT2440 1044199 NP_742620.2 CDS rplC NC_002947.3 551051 551686 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 551051..551686 Pseudomonas putida KT2440 1044200 NP_742621.1 CDS rplD NC_002947.3 551699 552301 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 551699..552301 Pseudomonas putida KT2440 1044201 NP_742622.1 CDS rplW NC_002947.3 552298 552597 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 552298..552597 Pseudomonas putida KT2440 1044202 NP_742623.1 CDS rplB NC_002947.3 552612 553436 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 552612..553436 Pseudomonas putida KT2440 1044203 NP_742624.1 CDS rpsS NC_002947.3 553453 553728 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 553453..553728 Pseudomonas putida KT2440 1044204 NP_742625.1 CDS rplV NC_002947.3 553740 554072 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 553740..554072 Pseudomonas putida KT2440 1044206 NP_742626.2 CDS rpsC NC_002947.3 554086 554772 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 554086..554772 Pseudomonas putida KT2440 1044209 NP_742627.1 CDS rplP NC_002947.3 554785 555198 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 554785..555198 Pseudomonas putida KT2440 1044210 NP_742628.2 CDS rpmC NC_002947.3 555198 555389 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 555198..555389 Pseudomonas putida KT2440 1044212 NP_742629.1 CDS rpsQ NC_002947.3 555392 555658 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 555392..555658 Pseudomonas putida KT2440 1044213 NP_742630.1 CDS rplN NC_002947.3 555682 556050 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 555682..556050 Pseudomonas putida KT2440 1044219 NP_742631.1 CDS rplX NC_002947.3 556062 556376 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 556062..556376 Pseudomonas putida KT2440 1044221 NP_742632.1 CDS rplE NC_002947.3 556397 556936 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 556397..556936 Pseudomonas putida KT2440 1044223 NP_742633.1 CDS rpsN NC_002947.3 556950 557255 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 556950..557255 Pseudomonas putida KT2440 1044225 NP_742634.1 CDS rpsH NC_002947.3 557464 557856 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 557464..557856 Pseudomonas putida KT2440 1044227 NP_742635.1 CDS rplF NC_002947.3 557869 558402 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 557869..558402 Pseudomonas putida KT2440 1044228 NP_742636.1 CDS rplR NC_002947.3 558413 558763 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 558413..558763 Pseudomonas putida KT2440 1044230 NP_742637.1 CDS rpsE NC_002947.3 558767 559267 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 558767..559267 Pseudomonas putida KT2440 1044231 NP_742638.1 CDS rpmD NC_002947.3 559270 559446 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 559270..559446 Pseudomonas putida KT2440 1044235 NP_742639.1 CDS rplO NC_002947.3 559450 559884 D late assembly protein; 50S ribosomal protein L15 559450..559884 Pseudomonas putida KT2440 1044238 NP_742640.1 CDS secY NC_002947.3 559885 561216 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 559885..561216 Pseudomonas putida KT2440 1044239 NP_742641.1 CDS rpmJ NC_002947.3 561245 561361 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 561245..561361 Pseudomonas putida KT2440 1044240 NP_742642.1 CDS rpsM NC_002947.3 561493 561849 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 561493..561849 Pseudomonas putida KT2440 1044241 NP_742643.1 CDS rpsK NC_002947.3 561868 562257 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 561868..562257 Pseudomonas putida KT2440 1044242 NP_742644.1 CDS rpsD NC_002947.3 562273 562893 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 562273..562893 Pseudomonas putida KT2440 1044244 NP_742645.1 CDS rpoA NC_002947.3 562916 563917 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 562916..563917 Pseudomonas putida KT2440 1044246 NP_742646.1 CDS rplQ NC_002947.3 563960 564346 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 563960..564346 Pseudomonas putida KT2440 1044247 NP_742647.1 CDS katA NC_002947.3 564519 565958 D similar to GB:M63346, SP:P24754, GB:M63347, PID:146987, PID:146995, GB:U03100, GB:D14705, GB:L22080, GB:D13866, SP:P35221, PID:1172426, PID:347316, PID:404105, and PID:433411; identified by sequence similarity; catalase 564519..565958 Pseudomonas putida KT2440 1044248 NP_742648.1 CDS PP_0482 NC_002947.3 566122 566586 D similar to SP:P28017, GB:X62377, and PID:39657; identified by sequence similarity; bacterioferritin 566122..566586 Pseudomonas putida KT2440 1044249 NP_742649.1 CDS uvrA NC_002947.3 566659 569493 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(566659..569493) Pseudomonas putida KT2440 1044250 NP_742650.1 CDS PP_0484 NC_002947.3 569623 571017 D identified by match to PFAM protein family HMM PF03605; major facilitator family transporter 569623..571017 Pseudomonas putida KT2440 1044254 NP_742651.1 CDS ssb NC_002947.3 571027 571572 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 571027..571572 Pseudomonas putida KT2440 1044255 NP_742652.1 CDS PP_0486 NC_002947.3 571663 573087 R identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator complement(571663..573087) Pseudomonas putida KT2440 1044256 NP_742653.1 CDS PP_0487 NC_002947.3 573234 574031 D similar to SP:P46490, GB:X54107, and PID:48759; identified by sequence similarity; hypothetical protein 573234..574031 Pseudomonas putida KT2440 1044257 NP_742654.1 CDS PP_0488 NC_002947.3 574053 574814 D similar to GB:M20879, GB:M20881, GB:M22437, GB:M93700, GB:M93704, GB:M33664, SP:P11462, SP:P11463, SP:P11464, PID:180239, PID:183482, PID:190591, PID:190624, PID:190636, PID:190645, PID:190653, PID:306791, PID:306796, PID:306797, PID:306798, PID:553624, PID:603453, and PID:904281; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 574053..574814 Pseudomonas putida KT2440 1044258 NP_742655.1 CDS PP_0490 NC_002947.3 578030 578980 D similar to GB:M61832, GB:M61831, SP:P23526, PID:178277, and PID:178279; identified by sequence similarity; formate dehydrogenase subunit beta 578030..578980 Pseudomonas putida KT2440 1044260 NP_742656.1 CDS PP_0491 NC_002947.3 578977 579633 D similar to GB:D14664, PID:285953, GB:L17326, and PID:306325; identified by sequence similarity; formate dehydrogenase subunit gamma 578977..579633 Pseudomonas putida KT2440 1044261 NP_742657.1 CDS PP_0492 NC_002947.3 579608 580564 D similar to GB:L16783, PID:1778838, PID:1842253, PID:1842255, and PID:292331; identified by sequence similarity; formate dehydrogenase accessory protein FdhE 579608..580564 Pseudomonas putida KT2440 1044263 NP_742658.1 CDS selA NC_002947.3 580709 582136 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 580709..582136 Pseudomonas putida KT2440 1044264 NP_742659.1 CDS selB NC_002947.3 582133 584055 D similar to GB:X71125, GB:X67731, SP:Q16769, PID:296949, and PID:525241; identified by sequence similarity; selenocysteine-specific translation elongation factor 582133..584055 Pseudomonas putida KT2440 1044266 NP_742660.1 CDS ansB NC_002947.3 584264 585253 R similar to GB:L08424, SP:P50553, and PID:306460; identified by sequence similarity; asparaginase complement(584264..585253) Pseudomonas putida KT2440 1044267 NP_742661.1 CDS PP_0496 NC_002947.3 585326 586768 R identified by match to PFAM protein family HMM PF01235; amino acid carrier protein complement(585326..586768) Pseudomonas putida KT2440 1044268 NP_742662.1 CDS PP_0497 NC_002947.3 586947 587756 D identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 586947..587756 Pseudomonas putida KT2440 1044269 NP_742663.1 CDS PP_0498 NC_002947.3 587768 588643 R hypothetical protein complement(587768..588643) Pseudomonas putida KT2440 1044270 NP_742664.1 CDS PP_0500 NC_002947.3 589875 590759 D identified by match to TIGR protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 589875..590759 Pseudomonas putida KT2440 1044272 NP_742665.1 CDS PP_0501 NC_002947.3 590752 591684 D identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase 590752..591684 Pseudomonas putida KT2440 1044273 NP_742666.1 CDS PP_0502 NC_002947.3 591715 592158 R identified by match to PFAM protein family HMM PF03551; HxlR family transcriptional regulator complement(591715..592158) Pseudomonas putida KT2440 1044274 NP_742667.1 CDS PP_0503 NC_002947.3 592261 593466 D identified by match to PFAM protein family HMM PF04087; major facilitator family transporter 592261..593466 Pseudomonas putida KT2440 1044275 NP_742668.1 CDS oprG NC_002947.3 593454 594137 R identified by match to PFAM protein family HMM PF03922; OmpW family protein complement(593454..594137) Pseudomonas putida KT2440 1044277 NP_742669.1 CDS PP_0505 NC_002947.3 594247 594885 R lipoprotein complement(594247..594885) Pseudomonas putida KT2440 1044278 NP_742670.1 CDS PP_0506 NC_002947.3 594886 596151 R identified by match to PFAM protein family HMM PF03824; hypothetical protein complement(594886..596151) Pseudomonas putida KT2440 1044279 NP_742671.1 CDS PP_0507 NC_002947.3 596151 596861 R identified by match to TIGR protein family HMM TIGR00960; ABC transporter ATP-binding protein complement(596151..596861) Pseudomonas putida KT2440 1044280 NP_742672.1 CDS PP_0508 NC_002947.3 596862 597443 R hypothetical protein complement(596862..597443) Pseudomonas putida KT2440 1044281 NP_742673.1 CDS PP_0509 NC_002947.3 597574 597918 D hypothetical protein 597574..597918 Pseudomonas putida KT2440 1044283 NP_742674.1 CDS trx-1 NC_002947.3 598070 598942 R identified by match to PFAM protein family HMM PF00085; thioredoxin complement(598070..598942) Pseudomonas putida KT2440 1044284 NP_742675.1 CDS PP_0512 NC_002947.3 599634 600218 R hypothetical protein complement(599634..600218) Pseudomonas putida KT2440 1044287 NP_742676.2 CDS nrdR NC_002947.3 600187 600651 D similar to GP:9950254; identified by sequence similarity; NrdR family transcriptional regulator 600187..600651 Pseudomonas putida KT2440 1044288 NP_742677.1 CDS ribD NC_002947.3 600648 601784 D similar to GB:L08176, GB:L31582, GB:L31583, GB:L31584, GB:L31581, SP:P32248, PID:183485, PID:468316, and PID:468320; identified by sequence similarity; riboflavin biosynthesis protein RibD 600648..601784 Pseudomonas putida KT2440 1044289 NP_742678.1 CDS ribE-1 NC_002947.3 601827 602492 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 601827..602492 Pseudomonas putida KT2440 1044290 NP_742679.2 CDS ribBA-1 NC_002947.3 602511 603602 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 602511..603602 Pseudomonas putida KT2440 1044291 NP_742680.1 CDS ribH NC_002947.3 603694 604170 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 603694..604170 Pseudomonas putida KT2440 1044292 NP_742681.1 CDS nusB NC_002947.3 604167 604667 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 604167..604667 Pseudomonas putida KT2440 1044293 NP_742682.1 CDS thiL NC_002947.3 604686 605654 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 604686..605654 Pseudomonas putida KT2440 1044294 NP_742683.1 CDS pgpA NC_002947.3 605651 606154 D similar to GP:9950246, and GP:9950246; identified by sequence similarity; phosphatidylglycerophosphatase A 605651..606154 Pseudomonas putida KT2440 1044295 NP_742684.1 CDS PP_0521 NC_002947.3 606171 606914 D identified by match to PFAM protein family HMM PF00497; hypothetical protein 606171..606914 Pseudomonas putida KT2440 1044296 NP_742685.1 CDS ribA NC_002947.3 607095 607712 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 607095..607712 Pseudomonas putida KT2440 1044298 NP_742686.1 CDS PP_0523 NC_002947.3 607709 608128 D similar to GP:9950242; identified by sequence similarity; hypothetical protein 607709..608128 Pseudomonas putida KT2440 1044299 NP_742687.1 CDS PP_0524 NC_002947.3 608128 608940 D similar to GP:4063695; identified by sequence similarity; hypothetical protein 608128..608940 Pseudomonas putida KT2440 1044300 NP_742688.1 CDS PP_0525 NC_002947.3 608918 610843 R identified by match to PFAM protein family HMM PF00593; B12 family TonB-dependent receptor complement(608918..610843) Pseudomonas putida KT2440 1044301 NP_742689.1 CDS PP_0526 NC_002947.3 611102 612067 D similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 611102..612067 Pseudomonas putida KT2440 1044302 NP_742690.2 CDS dxs NC_002947.3 612284 614179 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(612284..614179) Pseudomonas putida KT2440 1044303 NP_742691.1 CDS ispA NC_002947.3 614357 615244 R similar to GB:M92934, GB:X78947, GB:S56201, SP:P29279, PID:1514570, PID:180924, PID:474934, and PID:984956; identified by sequence similarity; polyprenyl synthetase complement(614357..615244) Pseudomonas putida KT2440 1044304 NP_742692.1 CDS xseB NC_002947.3 615241 615483 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(615241..615483) Pseudomonas putida KT2440 1044305 NP_742693.1 CDS ribB NC_002947.3 615649 616299 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(615649..616299) Pseudomonas putida KT2440 1044306 NP_742694.1 CDS PP_0531 NC_002947.3 616548 617651 D identified by match to TIGR protein family HMM TIGR00073; hypothetical protein 616548..617651 Pseudomonas putida KT2440 1044307 NP_742695.1 CDS PP_0532 NC_002947.3 617673 618566 R identified by match to PFAM protein family HMM PF00326; esterase complement(617673..618566) Pseudomonas putida KT2440 1044308 NP_742696.1 CDS pfeS NC_002947.3 618667 619995 R identified by match to PFAM protein family HMM PF00672; sensor protein PfeS complement(618667..619995) Pseudomonas putida KT2440 1044309 NP_742697.1 CDS PP_0534 NC_002947.3 619995 620687 R similar to GB:X64838, SP:P30622, PID:35999, GB:X64838, SP:P30622, and PID:35999; identified by sequence similarity; winged helix family two component transcriptional regulator complement(619995..620687) Pseudomonas putida KT2440 1044311 NP_742698.1 CDS PP_0535 NC_002947.3 620869 623046 D similar to GB:M29874, GB:M29873, SP:P20813, and PID:181294; identified by sequence similarity; TonB-dependent siderophore receptor 620869..623046 Pseudomonas putida KT2440 1044312 NP_742699.1 CDS PP_0536 NC_002947.3 623208 623678 R identified by match to PFAM protein family HMM PF03794; hypothetical protein complement(623208..623678) Pseudomonas putida KT2440 1044315 NP_742700.1 CDS PP_0537 NC_002947.3 624203 625039 R similar to GB:M59081, SP:P30144, PID:141992, GB:M59081, SP:P30144, and PID:141992; identified by sequence similarity; transcriptional regulator complement(624203..625039) Pseudomonas putida KT2440 1044316 NP_742701.1 CDS ppa NC_002947.3 625087 625614 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(625087..625614) Pseudomonas putida KT2440 1044317 NP_742702.1 CDS PP_0539 NC_002947.3 625707 626522 R hypothetical protein complement(625707..626522) Pseudomonas putida KT2440 1044319 NP_742703.1 CDS PP_0540 NC_002947.3 626543 627190 R similar to GP:9950224; identified by sequence similarity; hypothetical protein complement(626543..627190) Pseudomonas putida KT2440 1044320 NP_742704.1 CDS PP_0541 NC_002947.3 627408 627866 R identified by match to TIGR protein family HMM TIGR01575; acetyltransferase complement(627408..627866) Pseudomonas putida KT2440 1044321 NP_742705.1 CDS PP_0542 NC_002947.3 627974 628792 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(627974..628792) Pseudomonas putida KT2440 1044324 NP_742706.1 CDS eutB NC_002947.3 628801 630195 R identified by match to PFAM protein family HMM PF03475; ethanolamine ammonia lyase large subunit complement(628801..630195) Pseudomonas putida KT2440 1044325 NP_742707.1 CDS PP_0544 NC_002947.3 630242 631690 R similar to GP:9950217, GB:Z15005, SP:Q02224, and PID:29865; identified by sequence similarity; ethanolamine transporter complement(630242..631690) Pseudomonas putida KT2440 1044326 NP_742708.1 CDS PP_0545 NC_002947.3 631918 633438 R identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase complement(631918..633438) Pseudomonas putida KT2440 1044329 NP_742709.1 CDS PP_0546 NC_002947.3 633531 635708 D similar to GP:9950215; identified by sequence similarity; Fis family transcriptional regulator 633531..635708 Pseudomonas putida KT2440 1044330 NP_742710.1 CDS mpl NC_002947.3 635775 637124 D identified by match to PFAM protein family HMM PF01225; UDP-N-acetylmuramate 635775..637124 Pseudomonas putida KT2440 1044331 NP_742711.1 CDS ubiD NC_002947.3 637121 637750 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; aromatic acid decarboxylase 637121..637750 Pseudomonas putida KT2440 1044332 NP_742712.1 CDS PP_0549 NC_002947.3 637747 638034 D similar to GP:9950211; identified by sequence similarity; hypothetical protein 637747..638034 Pseudomonas putida KT2440 1044333 NP_742713.1 CDS PP_0550 NC_002947.3 638142 638786 R identified by match to PFAM protein family HMM PF01118; hypothetical protein complement(638142..638786) Pseudomonas putida KT2440 1044334 NP_742714.1 CDS PP_0551 NC_002947.3 638814 640742 R identified by match to PFAM protein family HMM PF02493; MORN domain-containing protein complement(638814..640742) Pseudomonas putida KT2440 1044335 NP_742715.1 CDS adh NC_002947.3 640761 641849 R similar to GB:M10058, SP:P07306, PID:179079, GB:M10058, SP:P07306, and PID:179079; identified by sequence similarity; 2,3-butanediol dehydrogenase complement(640761..641849) Pseudomonas putida KT2440 1044336 NP_742716.1 CDS acoC NC_002947.3 641878 642984 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(641878..642984) Pseudomonas putida KT2440 1044339 NP_742717.1 CDS acoB NC_002947.3 642981 644003 R similar to GB:M30448, SP:P13862, PID:181155, PID:29965, PID:29967, PID:29969, GB:M30448, SP:P13862, PID:181155, PID:29965, PID:29967, and PID:29969; identified by sequence similarity; acetoin dehydrogenase subunit beta complement(642981..644003) Pseudomonas putida KT2440 1044340 NP_742718.1 CDS acoA NC_002947.3 644037 645014 R similar to GB:Z19585, SP:P35443, PID:311626, GB:Z19585, SP:P35443, and PID:311626; identified by sequence similarity; pyruvate dehydrogenase complement(644037..645014) Pseudomonas putida KT2440 1044342 NP_742719.1 CDS PP_0556 NC_002947.3 645037 646092 R similar to GB:M57763, SP:P26438, PID:178989, GB:M57763, SP:P26438, and PID:178989; identified by sequence similarity; ATP-NAD/AcoX kinase complement(645037..646092) Pseudomonas putida KT2440 1044343 NP_742720.1 CDS acoR NC_002947.3 646376 648229 D similar to GP:3688510, GB:S46950, SP:P29274, GB:U20231, PID:1117998, PID:177892, and PID:400452; identified by sequence similarity; Fis family transcriptional regulator 646376..648229 Pseudomonas putida KT2440 1044344 NP_742721.1 CDS accC-1 NC_002947.3 648320 649675 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(648320..649675) Pseudomonas putida KT2440 1044345 NP_742722.1 CDS accB NC_002947.3 649693 650154 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(649693..650154) Pseudomonas putida KT2440 1044346 NP_742723.1 CDS aroQ-1 NC_002947.3 650254 650709 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(650254..650709) Pseudomonas putida KT2440 1044348 NP_742724.1 CDS dipZ NC_002947.3 650889 652661 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(650889..652661) Pseudomonas putida KT2440 1044350 NP_742725.1 CDS ctpL NC_002947.3 652779 654740 R similar to GP:8307682; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer complement(652779..654740) Pseudomonas putida KT2440 1044351 NP_742726.1 CDS PP_0563 NC_002947.3 654985 656340 R identified by match to PFAM protein family HMM PF00990; response regulator receiver modulated diguanylate cyclase complement(654985..656340) Pseudomonas putida KT2440 1044352 NP_742727.1 CDS PP_0564 NC_002947.3 656567 657655 D hypothetical protein 656567..657655 Pseudomonas putida KT2440 1044353 NP_742728.1 CDS PP_0565 NC_002947.3 657658 658191 D similar to SP:Q9X7Q6; identified by sequence similarity; NUDIX hydrolase 657658..658191 Pseudomonas putida KT2440 1044354 NP_742729.1 CDS PP_0566 NC_002947.3 658431 658802 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 658431..658802 Pseudomonas putida KT2440 1044356 NP_742730.1 CDS speA NC_002947.3 658953 660866 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 658953..660866 Pseudomonas putida KT2440 1044357 NP_742731.1 CDS PP_0568 NC_002947.3 661033 661488 D hypothetical protein 661033..661488 Pseudomonas putida KT2440 1044358 NP_742732.1 CDS PP_0569 NC_002947.3 661615 662952 R identified by match to PFAM protein family HMM PF04235; MATE efflux family protein complement(661615..662952) Pseudomonas putida KT2440 1044359 NP_742733.1 CDS PP_0570 NC_002947.3 663133 668034 D similar to SP:P10345, PID:41572, GB:U00096, PID:1651370, PID:1787030, SP:P10345, PID:41572, GB:U00096, PID:1651370, and PID:1787030; identified by sequence similarity; alpha-2-macroglobulin 663133..668034 Pseudomonas putida KT2440 1044360 NP_742734.1 CDS PP_0571 NC_002947.3 668186 668521 R similar to GP:9946353, and GP:9946353; identified by sequence similarity; hypothetical protein complement(668186..668521) Pseudomonas putida KT2440 1044361 NP_742735.1 CDS pbpC NC_002947.3 668557 670911 D penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 668557..670911 Pseudomonas putida KT2440 1044365 NP_742736.1 CDS PP_0573 NC_002947.3 670944 672668 D hypothetical protein 670944..672668 Pseudomonas putida KT2440 1044368 NP_742737.1 CDS PP_0574 NC_002947.3 672741 673517 R identified by match to PFAM protein family HMM PF00072; LuxR family transcriptional regulator complement(672741..673517) Pseudomonas putida KT2440 1044369 NP_742738.1 CDS PP_0575 NC_002947.3 673636 674106 R hypothetical protein complement(673636..674106) Pseudomonas putida KT2440 1044371 NP_742739.1 CDS PP_0576 NC_002947.3 674412 674981 R identified by match to TIGR protein family HMM TIGR01690; lipoprotein complement(674412..674981) Pseudomonas putida KT2440 1044372 NP_742740.1 CDS PP_0577 NC_002947.3 675001 675696 R hypothetical protein complement(675001..675696) Pseudomonas putida KT2440 1044373 NP_742741.1 CDS PP_0578 NC_002947.3 675659 676408 R methyltransferase complement(675659..676408) Pseudomonas putida KT2440 1044375 NP_742742.1 CDS PP_0579 NC_002947.3 676405 676803 R hypothetical protein complement(676405..676803) Pseudomonas putida KT2440 1044378 NP_742743.1 CDS PP_0580 NC_002947.3 676788 677639 R identified by match to PFAM protein family HMM PF01575; acyl dehydratase MaoC complement(676788..677639) Pseudomonas putida KT2440 1044380 NP_742744.1 CDS fabG NC_002947.3 677642 679015 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(677642..679015) Pseudomonas putida KT2440 1044381 NP_742745.1 CDS PP_0582 NC_002947.3 679112 680389 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 679112..680389 Pseudomonas putida KT2440 1044385 NP_742746.1 CDS PP_0583 NC_002947.3 680479 681258 D similar to GP:9945995; identified by sequence similarity; AraC family transcriptional regulator 680479..681258 Pseudomonas putida KT2440 1044391 NP_742747.1 CDS PP_0584 NC_002947.3 681327 683270 R identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer complement(681327..683270) Pseudomonas putida KT2440 1044392 NP_742748.1 CDS PP_0585 NC_002947.3 683438 683848 R identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator complement(683438..683848) Pseudomonas putida KT2440 1044395 NP_742749.1 CDS PP_0586 NC_002947.3 683845 686244 R similar to GP:9950104; identified by sequence similarity; heavy metal translocating P-type ATPase complement(683845..686244) Pseudomonas putida KT2440 1044396 NP_742750.1 CDS PP_0587 NC_002947.3 686297 686683 R similar to GP:9949730; identified by sequence similarity; hypothetical protein complement(686297..686683) Pseudomonas putida KT2440 1044398 NP_742751.1 CDS PP_0588 NC_002947.3 686829 687026 D identified by match to PFAM protein family HMM PF00403; heavy metal transport/detoxification protein 686829..687026 Pseudomonas putida KT2440 1044399 NP_742752.1 CDS PP_0589 NC_002947.3 687134 688315 D identified by match to TIGR protein family HMM TIGR00880; Bcr/CflA family multidrug resistance transporter 687134..688315 Pseudomonas putida KT2440 1044400 NP_742753.1 CDS PP_0590 NC_002947.3 688953 689666 D identified by match to PFAM protein family HMM PF01022; ArsR family transcriptional regulator 688953..689666 Pseudomonas putida KT2440 1044401 NP_742754.1 CDS add NC_002947.3 689687 690634 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(689687..690634) Pseudomonas putida KT2440 1044402 NP_742755.1 CDS PP_0592 NC_002947.3 690720 691406 R similar to GP:15140986; identified by sequence similarity; short chain dehydrogenase complement(690720..691406) Pseudomonas putida KT2440 1044403 NP_742756.1 CDS PP_0593 NC_002947.3 691775 692359 R identified by match to TIGR protein family HMM TIGR00257; hypothetical protein complement(691775..692359) Pseudomonas putida KT2440 1044404 NP_742757.1 CDS PP_0594 NC_002947.3 692369 693112 R similar to GP:9945999; identified by sequence similarity; TetR family transcriptional regulator complement(692369..693112) Pseudomonas putida KT2440 1044405 NP_742758.1 CDS PP_0595 NC_002947.3 693122 694039 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(693122..694039) Pseudomonas putida KT2440 1044406 NP_742759.1 CDS PP_0596 NC_002947.3 694158 695504 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 694158..695504 Pseudomonas putida KT2440 1044407 NP_742760.1 CDS mmsA-1 NC_002947.3 695578 697071 D similar to SP:P28810; identified by sequence similarity; methylmalonate-semialdehyde dehydrogenase 695578..697071 Pseudomonas putida KT2440 1044408 NP_742761.1 CDS PP_0599 NC_002947.3 704522 706822 D similar to SP:P76272; identified by sequence similarity; hypothetical protein 704522..706822 Pseudomonas putida KT2440 1044413 NP_742762.1 CDS rpsT NC_002947.3 707068 707346 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(707068..707346) Pseudomonas putida KT2440 1044414 NP_742763.1 CDS PP_0601 NC_002947.3 707597 709135 D identified by match to PFAM protein family HMM PF03023; MviN family membrane protein 707597..709135 Pseudomonas putida KT2440 1044415 NP_742764.1 CDS ribF NC_002947.3 709254 710204 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 709254..710204 Pseudomonas putida KT2440 1044416 NP_742765.1 CDS ileS NC_002947.3 710201 713032 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 710201..713032 Pseudomonas putida KT2440 1044417 NP_742766.1 CDS lspA NC_002947.3 713010 713540 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 713010..713540 Pseudomonas putida KT2440 1044418 NP_742767.1 CDS fkpB NC_002947.3 713533 713970 D similar to SP:P22563, GB:L08666, SP:P45880, PID:190200, and PID:190201; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 713533..713970 Pseudomonas putida KT2440 1044419 NP_742768.1 CDS ispH NC_002947.3 713985 714932 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 713985..714932 Pseudomonas putida KT2440 1044422 NP_742769.1 CDS PP_0607 NC_002947.3 715009 715491 R identified by match to TIGR protein family HMM TIGR01708; type IV pili biogenesis protein FimT complement(715009..715491) Pseudomonas putida KT2440 1044423 NP_742770.1 CDS PP_0608 NC_002947.3 715637 715783 D hypothetical protein 715637..715783 Pseudomonas putida KT2440 1044424 NP_742771.1 CDS PP_0609 NC_002947.3 715780 716424 D hypothetical protein 715780..716424 Pseudomonas putida KT2440 1044426 NP_742772.1 CDS PP_0610 NC_002947.3 716421 716885 D hypothetical protein 716421..716885 Pseudomonas putida KT2440 1044427 NP_742773.1 CDS pilE NC_002947.3 716887 717276 D identified by match to PFAM protein family HMM PF00114; type IV pili biogenesis protein PilE 716887..717276 Pseudomonas putida KT2440 1044428 NP_742774.1 CDS PP_0612 NC_002947.3 717331 718428 D similar to GP:9950792; identified by sequence similarity; FAD dependent oxidoreductase 717331..718428 Pseudomonas putida KT2440 1044429 NP_742775.1 CDS PP_0613 NC_002947.3 718505 719914 R similar to GP:10567370; identified by sequence similarity; amidase complement(718505..719914) Pseudomonas putida KT2440 1044430 NP_742776.1 CDS PP_0614 NC_002947.3 719916 721193 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(719916..721193) Pseudomonas putida KT2440 1044431 NP_742777.1 CDS PP_0615 NC_002947.3 721300 721995 R similar to GP:3644003, GB:J03910, GB:S68954, SP:P02795, SP:P04731, SP:P04732, SP:P04733, SP:P07438, SP:P13640, SP:P25713, SP:P80294, SP:P80295, SP:P80296, PID:188713, PID:517349, and PID:914851; identified by sequence similarity; branched chain amino acid ABC transporter ATP-binding protein complement(721300..721995) Pseudomonas putida KT2440 1044432 NP_742778.1 CDS PP_0616 NC_002947.3 721995 722747 R similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; branched chain amino acid ABC transporter ATP-binding protein complement(721995..722747) Pseudomonas putida KT2440 1044433 NP_742779.1 CDS PP_0617 NC_002947.3 722747 723766 R similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; inner-membrane translocator complement(722747..723766) Pseudomonas putida KT2440 1044434 NP_742780.1 CDS PP_0618 NC_002947.3 723768 724628 R similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; inner-membrane translocator complement(723768..724628) Pseudomonas putida KT2440 1044435 NP_742781.1 CDS PP_0619 NC_002947.3 724694 725896 R similar to SP:P21175, GB:U10860, SP:P49915, and PID:595410; identified by sequence similarity; branched-chain amino acid ABC transporter substrate-binding protein complement(724694..725896) Pseudomonas putida KT2440 1044436 NP_742782.1 CDS PP_0620 NC_002947.3 725987 726751 R similar to GB:M74011, SP:Q01244, PID:155552, GB:M74011, SP:Q01244, and PID:155552; identified by sequence similarity; GntR family transcriptional regulator complement(725987..726751) Pseudomonas putida KT2440 1044437 NP_742783.1 CDS PP_0621 NC_002947.3 727018 727329 R similar to GP:5924036; identified by sequence similarity; hypothetical protein complement(727018..727329) Pseudomonas putida KT2440 1044438 NP_742784.1 CDS PP_0622 NC_002947.3 727343 728362 R similar to GB:X77722, PID:1147572, PID:488364, PID:994725, PID:994726, PID:995295, and PID:995297; identified by sequence similarity; competence lipoprotein ComL complement(727343..728362) Pseudomonas putida KT2440 1044439 NP_742785.1 CDS PP_0624 NC_002947.3 729469 730209 D identified by match to PFAM protein family HMM PF02578; hypothetical protein 729469..730209 Pseudomonas putida KT2440 1044443 NP_742786.1 CDS clpB NC_002947.3 730459 733023 D identified by match to PFAM protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB 730459..733023 Pseudomonas putida KT2440 1044444 NP_742787.1 CDS ndh NC_002947.3 734019 735314 R similar to GP:9664855, and SP:P00393; identified by sequence similarity; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(734019..735314) Pseudomonas putida KT2440 1044445 NP_742788.1 CDS PP_0627 NC_002947.3 735399 735572 R hypothetical protein complement(735399..735572) Pseudomonas putida KT2440 1044446 NP_742789.1 CDS PP_0628 NC_002947.3 735705 736334 R hypothetical protein complement(735705..736334) Pseudomonas putida KT2440 1044447 NP_742790.1 CDS PP_0629 NC_002947.3 736827 737615 D hypothetical protein 736827..737615 Pseudomonas putida KT2440 1044448 NP_742791.1 CDS PP_0630 NC_002947.3 737727 737927 R similar to GP:3169572, and GP:9950773; identified by sequence similarity; zinc-binding protein complement(737727..737927) Pseudomonas putida KT2440 1044449 NP_742792.1 CDS coaE NC_002947.3 737924 738547 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(737924..738547) Pseudomonas putida KT2440 1044450 NP_742793.1 CDS pilD NC_002947.3 738547 739413 R similar to GB:M18461, GB:S60788, PID:1552514, PID:339016, PID:575274, PID:930052, GB:M18461, GB:S60788, PID:1552514, PID:339016, PID:575274, and PID:930052; identified by sequence similarity; prepilin peptidase complement(738547..739413) Pseudomonas putida KT2440 1044451 NP_742794.1 CDS pilC NC_002947.3 739416 740624 R similar to GB:L06139, SP:Q02763, PID:292824, GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; type IV pili biogenesis protein PilC complement(739416..740624) Pseudomonas putida KT2440 1044452 NP_742795.1 CDS pilA NC_002947.3 740841 741251 D similar to GB:M34046, GB:M61886, GB:J04129, SP:P09466, GB:M34046, GB:M61886, GB:J04129, and SP:P09466; identified by sequence similarity; fimbrial protein pilin 740841..741251 Pseudomonas putida KT2440 1044453 NP_742796.1 CDS PP_0635 NC_002947.3 741898 743319 D similar to GP:4323583, GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 741898..743319 Pseudomonas putida KT2440 1044454 NP_742797.1 CDS PP_0636 NC_002947.3 743593 744333 R similar to SP:Q48770; identified by sequence similarity; cold shock DNA-binding domain-containing protein complement(743593..744333) Pseudomonas putida KT2440 1044455 NP_742798.1 CDS PP_0637 NC_002947.3 744964 746496 R similar to GP:11641376; identified by sequence similarity; ISPpu15, transposase Orf2 complement(744964..746496) Pseudomonas putida KT2440 1044457 NP_742799.1 CDS PP_0638 NC_002947.3 746515 746871 R similar to GP:8037784; identified by sequence similarity; ISPpu15, transposase Orf1 complement(746515..746871) Pseudomonas putida KT2440 1044458 NP_742800.1 CDS PP_0639 NC_002947.3 748964 749680 R hypothetical protein complement(748964..749680) Pseudomonas putida KT2440 1044459 NP_742801.1 CDS PP_0640 NC_002947.3 749677 750861 R identified by match to PFAM protein family HMM PF00005; hypothetical protein complement(749677..750861) Pseudomonas putida KT2440 1044460 NP_742802.1 CDS PP_0641 NC_002947.3 752454 752759 R hypothetical protein complement(752454..752759) Pseudomonas putida KT2440 1044461 NP_742803.1 CDS PP_0642 NC_002947.3 753914 754528 D identified by match to PFAM protein family HMM PF02588; hypothetical protein 753914..754528 Pseudomonas putida KT2440 1044463 NP_742804.1 CDS PP_0643 NC_002947.3 754560 754742 R hypothetical protein complement(754560..754742) Pseudomonas putida KT2440 1044464 NP_742805.1 CDS PP_0644 NC_002947.3 754735 754854 R hypothetical protein complement(754735..754854) Pseudomonas putida KT2440 1044465 NP_742806.1 CDS PP_0645 NC_002947.3 754910 755191 R hypothetical protein complement(754910..755191) Pseudomonas putida KT2440 1044466 NP_742807.1 CDS PP_0646 NC_002947.3 755403 756803 D hypothetical protein 755403..756803 Pseudomonas putida KT2440 1044467 NP_742808.1 CDS PP_0647 NC_002947.3 756796 757185 D hypothetical protein 756796..757185 Pseudomonas putida KT2440 1044468 NP_742809.1 CDS PP_0648 NC_002947.3 757377 757832 D similar to GP:15075854; identified by sequence similarity; hypothetical protein 757377..757832 Pseudomonas putida KT2440 1044469 NP_742810.1 CDS PP_0649 NC_002947.3 757920 758330 D identified by match to PFAM protein family HMM PF00293; MutT/nudix family protein 757920..758330 Pseudomonas putida KT2440 1044470 NP_742811.1 CDS PP_0650 NC_002947.3 758358 758468 R similar to GP:14270229; identified by sequence similarity; hypothetical protein complement(758358..758468) Pseudomonas putida KT2440 1044471 NP_742812.1 CDS PP_0651 NC_002947.3 758577 759026 D identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 758577..759026 Pseudomonas putida KT2440 1044473 NP_742813.1 CDS PP_0652 NC_002947.3 760152 761537 R identified by match to PFAM protein family HMM PF03600; gluconate transporter complement(760152..761537) Pseudomonas putida KT2440 1044474 NP_742814.1 CDS PP_0653 NC_002947.3 761534 761815 R hypothetical protein complement(761534..761815) Pseudomonas putida KT2440 1044475 NP_742815.1 CDS mdh NC_002947.3 762063 762899 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 762063..762899 Pseudomonas putida KT2440 1044477 NP_742816.1 CDS PP_0655 NC_002947.3 762953 763279 D similar to GP:2708665; identified by sequence similarity; fimbrial protein-like protein 762953..763279 Pseudomonas putida KT2440 1044478 NP_742817.1 CDS PP_0656 NC_002947.3 763697 764518 R identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit complement(763697..764518) Pseudomonas putida KT2440 1044480 NP_742818.1 CDS PP_0657 NC_002947.3 764515 765342 R identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein complement(764515..765342) Pseudomonas putida KT2440 1044481 NP_742819.1 CDS PP_0658 NC_002947.3 765404 766339 D similar to GB:U02081, and PID:548082; identified by sequence similarity; homocysteine S-methyltransferase 765404..766339 Pseudomonas putida KT2440 1044482 NP_742820.1 CDS metB NC_002947.3 766507 767778 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 766507..767778 Pseudomonas putida KT2440 1044483 NP_742821.1 CDS PP_0660 NC_002947.3 767921 769360 D similar to SP:P13971, GB:X05813, and PID:42644; identified by sequence similarity; amino acid transporter 767921..769360 Pseudomonas putida KT2440 1044484 NP_742822.1 CDS PP_0661 NC_002947.3 769406 770290 D similar to SP:P24734; identified by sequence similarity; transcriptional regulator AmpR 769406..770290 Pseudomonas putida KT2440 1044485 NP_742823.1 CDS PP_0662 NC_002947.3 770315 771703 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 770315..771703 Pseudomonas putida KT2440 1044486 NP_742824.1 CDS PP_0663 NC_002947.3 771700 772137 D similar to GP:6224605; identified by sequence similarity; AsnC family transcriptional regulator 771700..772137 Pseudomonas putida KT2440 1044487 NP_742825.1 CDS PP_0664 NC_002947.3 772336 773379 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 772336..773379 Pseudomonas putida KT2440 1044488 NP_742826.1 CDS PP_0665 NC_002947.3 773392 774810 D similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 773392..774810 Pseudomonas putida KT2440 1044489 NP_742827.1 CDS PP_0666 NC_002947.3 774827 775189 D identified by match to TIGR protein family HMM TIGR00004; hypothetical protein 774827..775189 Pseudomonas putida KT2440 1044490 NP_742828.1 CDS PP_0667 NC_002947.3 775360 775896 D identified by match to PFAM protein family HMM PF00196; ECF subfamily RNA polymerase sigma factor 775360..775896 Pseudomonas putida KT2440 1044491 NP_742829.1 CDS PP_0668 NC_002947.3 775893 776858 D similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; transmembrane sensor 775893..776858 Pseudomonas putida KT2440 1044492 NP_742830.1 CDS PP_0669 NC_002947.3 776949 779381 D similar to GB:L01694, SP:Q03113, and PID:182994; identified by sequence similarity; outer membrane ferric siderophore receptor 776949..779381 Pseudomonas putida KT2440 1044493 NP_742831.1 CDS PP_0670 NC_002947.3 779515 780468 R similar to SP:P15109, and PID:151431; identified by sequence similarity; bile acid/Na+ symporter family protein complement(779515..780468) Pseudomonas putida KT2440 1044494 NP_742832.1 CDS glyA NC_002947.3 780590 781843 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(780590..781843) Pseudomonas putida KT2440 1044495 NP_742833.1 CDS PP_0672 NC_002947.3 782093 785923 R similar to GP:9950851; identified by sequence similarity; sensory box protein complement(782093..785923) Pseudomonas putida KT2440 1044496 NP_742834.1 CDS PP_0673 NC_002947.3 786145 786576 D hypothetical protein 786145..786576 Pseudomonas putida KT2440 1044497 NP_742835.1 CDS PP_0674 NC_002947.3 786881 788548 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 786881..788548 Pseudomonas putida KT2440 1044500 NP_742836.1 CDS gdhA NC_002947.3 788761 790110 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 788761..790110 Pseudomonas putida KT2440 1044501 NP_742837.1 CDS PP_0676 NC_002947.3 790170 790667 R identified by match to PFAM protein family HMM PF01272; GreA/GreB family elongation factor complement(790170..790667) Pseudomonas putida KT2440 1044502 NP_742838.1 CDS PP_0677 NC_002947.3 790735 791091 R lipoprotein complement(790735..791091) Pseudomonas putida KT2440 1044503 NP_742839.1 CDS PP_0678 NC_002947.3 791193 793055 R hypothetical protein complement(791193..793055) Pseudomonas putida KT2440 1044504 NP_742840.1 CDS PP_0679 NC_002947.3 793118 793633 R hypothetical protein complement(793118..793633) Pseudomonas putida KT2440 1044505 NP_742841.1 CDS PP_0680 NC_002947.3 793857 796295 D identified by match to TIGR protein family HMM TIGR00764; ATP-dependent protease 793857..796295 Pseudomonas putida KT2440 1044506 NP_742842.1 CDS PP_0681 NC_002947.3 796458 796796 D hypothetical protein 796458..796796 Pseudomonas putida KT2440 1044507 NP_742843.1 CDS PP_0682 NC_002947.3 796986 797474 D identified by match to PFAM protein family HMM PF03350; hypothetical protein 796986..797474 Pseudomonas putida KT2440 1044508 NP_742844.1 CDS PP_0683 NC_002947.3 797551 797940 D hypothetical protein 797551..797940 Pseudomonas putida KT2440 1044509 NP_742845.1 CDS fklB-1 NC_002947.3 798026 798643 D similar to SP:P39311; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 798026..798643 Pseudomonas putida KT2440 1044510 NP_742846.1 CDS PP_0685 NC_002947.3 798670 798915 R hypothetical protein complement(798670..798915) Pseudomonas putida KT2440 1044511 NP_742847.1 CDS phnA NC_002947.3 799000 799341 R similar to GB:L19182, and PID:307151; identified by sequence similarity; alkylphosphonate utilization protein PhnA complement(799000..799341) Pseudomonas putida KT2440 1044512 NP_742848.1 CDS ispB NC_002947.3 799502 800470 R similar to GP:5712726, GB:L05568, SP:P31645, PID:2149095, PID:291820, and PID:36433; identified by sequence similarity; polyprenyl synthetase complement(799502..800470) Pseudomonas putida KT2440 1044514 NP_742849.2 CDS rplU NC_002947.3 800715 801029 D similar to GP:5712722, GB:X03072, SP:P04628, and PID:33936; identified by sequence similarity; 50S ribosomal protein L21 800715..801029 Pseudomonas putida KT2440 1044516 NP_742850.1 CDS rpmA NC_002947.3 801068 801325 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 801068..801325 Pseudomonas putida KT2440 1044517 NP_742851.1 CDS obgE NC_002947.3 801514 802740 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 801514..802740 Pseudomonas putida KT2440 1044518 NP_742852.1 CDS proB NC_002947.3 802826 803944 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 802826..803944 Pseudomonas putida KT2440 1044519 NP_742853.1 CDS creA NC_002947.3 803941 804402 D similar to GB:J04970, SP:P14384, and PID:179932; identified by sequence similarity; CreA family protein 803941..804402 Pseudomonas putida KT2440 1044520 NP_742854.1 CDS PP_0693 NC_002947.3 804496 807327 R hypothetical protein complement(804496..807327) Pseudomonas putida KT2440 1044521 NP_742855.1 CDS PP_0694 NC_002947.3 807324 808031 R identified by match to PFAM protein family HMM PF04288; hypothetical protein complement(807324..808031) Pseudomonas putida KT2440 1044523 NP_742856.1 CDS PP_0695 NC_002947.3 808021 809355 R hypothetical protein complement(808021..809355) Pseudomonas putida KT2440 1044524 NP_742857.1 CDS PP_0696 NC_002947.3 809432 810307 D hypothetical protein 809432..810307 Pseudomonas putida KT2440 1044525 NP_742858.1 CDS PP_0697 NC_002947.3 810304 810759 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 810304..810759 Pseudomonas putida KT2440 1044526 NP_742859.1 CDS PP_0698 NC_002947.3 811332 812249 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(811332..812249) Pseudomonas putida KT2440 1044528 NP_742860.1 CDS PP_0699 NC_002947.3 812477 813091 D identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE 812477..813091 Pseudomonas putida KT2440 1044529 NP_742861.1 CDS PP_0700 NC_002947.3 813394 814380 R FecR anti-FecI sigma factor complement(813394..814380) Pseudomonas putida KT2440 1044530 NP_742862.1 CDS PP_0701 NC_002947.3 814511 815725 D similar to GB:X64063, SP:P28765, and PID:1335662; identified by sequence similarity; MFS efflux transporter 814511..815725 Pseudomonas putida KT2440 1044532 NP_742863.1 CDS PP_0702 NC_002947.3 816050 817207 D identified by match to PFAM protein family HMM PF03619; major facilitator family transporter 816050..817207 Pseudomonas putida KT2440 1044533 NP_742864.1 CDS PP_0703 NC_002947.3 817215 818165 R similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; FecR anti-FecI sigma factor complement(817215..818165) Pseudomonas putida KT2440 1044534 NP_742865.1 CDS PP_0704 NC_002947.3 818158 818673 R ECF subfamily RNA polymerase sigma factor complement(818158..818673) Pseudomonas putida KT2440 1044535 NP_742866.1 CDS PP_0705 NC_002947.3 818845 819471 D similar to SP:Q92383, SP:P37446, GB:X76901, and PID:436881; identified by sequence similarity; DNA-3-methyladenine glycosylase II 818845..819471 Pseudomonas putida KT2440 1044536 NP_742867.1 CDS ada NC_002947.3 819519 820571 D identified by match to PFAM protein family HMM PF01035; adaptive response regulator protein 819519..820571 Pseudomonas putida KT2440 1044537 NP_742868.1 CDS PP_0707 NC_002947.3 820472 823039 D identified by match to PFAM protein family HMM PF03528; mechanosensitive ion channel protein MscS 820472..823039 Pseudomonas putida KT2440 1044538 NP_742869.1 CDS PP_0708 NC_002947.3 823171 824601 R similar to SP:P19841, GB:X54690, and PID:45698; identified by sequence similarity; betaine aldehyde dehydrogenase complement(823171..824601) Pseudomonas putida KT2440 1044539 NP_742870.1 CDS PP_0709 NC_002947.3 824615 826114 R identified by match to TIGR protein family HMM TIGR00800; NCS1 nucleoside transporter complement(824615..826114) Pseudomonas putida KT2440 1044540 NP_742871.1 CDS PP_0710 NC_002947.3 826207 826806 R hypothetical protein complement(826207..826806) Pseudomonas putida KT2440 1044541 NP_742872.1 CDS PP_0711 NC_002947.3 826808 827428 D similar to GB:M17219, SP:P04898, SP:P04899, SP:P08754, and PID:386747; identified by sequence similarity; isochorismatase superfamily hydrolase 826808..827428 Pseudomonas putida KT2440 1044542 NP_742873.1 CDS PP_0712 NC_002947.3 827535 828350 D identified by match to PFAM protein family HMM PF03976; hypothetical protein 827535..828350 Pseudomonas putida KT2440 1044543 NP_742874.1 CDS PP_0713 NC_002947.3 828387 829583 D similar to GP:7742003; identified by sequence similarity; potassium efflux system protein 828387..829583 Pseudomonas putida KT2440 1044544 NP_742875.1 CDS PP_0714 NC_002947.3 829624 830721 D similar to SP:P28607, PID:38694, SP:P28607, and PID:38694; identified by sequence similarity; permease 829624..830721 Pseudomonas putida KT2440 1044545 NP_742876.1 CDS PP_0715 NC_002947.3 830725 832239 D identified by match to PFAM protein family HMM PF02321; NodT family RND efflux system outer membrane lipoprotein 830725..832239 Pseudomonas putida KT2440 1044546 NP_742877.1 CDS PP_0716 NC_002947.3 832236 833333 D identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 832236..833333 Pseudomonas putida KT2440 1044547 NP_742878.1 CDS PP_0717 NC_002947.3 833323 834345 D identified by match to PFAM protein family HMM PF03631; hypothetical protein 833323..834345 Pseudomonas putida KT2440 1044548 NP_742879.1 CDS PP_0718 NC_002947.3 834364 836076 R identified by match to PFAM protein family HMM PF04138; sulfate transporter complement(834364..836076) Pseudomonas putida KT2440 1044549 NP_742880.1 CDS PP_0719 NC_002947.3 836253 837353 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(836253..837353) Pseudomonas putida KT2440 1044550 NP_742881.1 CDS pth NC_002947.3 837378 837962 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(837378..837962) Pseudomonas putida KT2440 1044551 NP_742882.1 CDS PP_0721 NC_002947.3 838042 838695 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(838042..838695) Pseudomonas putida KT2440 1044552 NP_742883.1 CDS prsA NC_002947.3 838754 839695 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(838754..839695) Pseudomonas putida KT2440 1044553 NP_742884.1 CDS ipk NC_002947.3 839839 840699 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(839839..840699) Pseudomonas putida KT2440 1044555 NP_742885.1 CDS lolB NC_002947.3 840704 841321 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; molecular chaperone LolB complement(840704..841321) Pseudomonas putida KT2440 1044556 NP_742886.1 CDS PP_0725 NC_002947.3 841326 843047 R identified by match to PFAM protein family HMM PF00515; hypothetical protein complement(841326..843047) Pseudomonas putida KT2440 1044557 NP_742887.1 CDS PP_0726 NC_002947.3 843516 844241 R similar to GP:5051798; identified by sequence similarity; transferase complement(843516..844241) Pseudomonas putida KT2440 1044559 NP_742888.1 CDS PP_0727 NC_002947.3 844238 844840 R identified by match to TIGR protein family HMM TIGR00888; hypothetical protein complement(844238..844840) Pseudomonas putida KT2440 1044560 NP_742889.1 CDS PP_0728 NC_002947.3 844837 846006 R identified by match to PFAM protein family HMM PF00391; hypothetical protein complement(844837..846006) Pseudomonas putida KT2440 1044561 NP_742890.1 CDS PP_0729 NC_002947.3 846007 847197 R similar to GB:L28041, GB:X85789, PID:407374, PID:476745, and PID:757815; identified by sequence similarity; phosphoenolpyruvate synthase complement(846007..847197) Pseudomonas putida KT2440 1044562 NP_742891.1 CDS PP_0730 NC_002947.3 847257 848567 R similar to GP:4158183, and GP:4158183; identified by sequence similarity; hypothetical protein complement(847257..848567) Pseudomonas putida KT2440 1044563 NP_742892.1 CDS PP_0731 NC_002947.3 848580 849197 R similar to SP:P35879; identified by sequence similarity; phosphatidylserine synthase complement(848580..849197) Pseudomonas putida KT2440 1044564 NP_742893.1 CDS hemA NC_002947.3 851220 852497 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 851220..852497 Pseudomonas putida KT2440 1044565 NP_742894.1 CDS prfA NC_002947.3 852494 853576 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 852494..853576 Pseudomonas putida KT2440 1044566 NP_742895.1 CDS hemK NC_002947.3 853576 854406 D similar to GP:9950919, GB:L34170, GB:L13852, SP:P41226, and PID:986881; identified by sequence similarity; methyl transferase 853576..854406 Pseudomonas putida KT2440 1044567 NP_742896.1 CDS PP_0735 NC_002947.3 854400 855155 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 854400..855155 Pseudomonas putida KT2440 1044568 NP_742897.1 CDS murI NC_002947.3 855148 855945 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 855148..855945 Pseudomonas putida KT2440 1044569 NP_742898.1 CDS PP_0737 NC_002947.3 856041 856568 D hypothetical protein 856041..856568 Pseudomonas putida KT2440 1044570 NP_742899.1 CDS PP_0738 NC_002947.3 856684 857382 R identified by match to PFAM protein family HMM PF00106; hypothetical protein complement(856684..857382) Pseudomonas putida KT2440 1044571 NP_742900.1 CDS phrB NC_002947.3 857379 858821 R similar to GB:X56494, GB:M23725, GB:M26252, SP:P14618, SP:P14786, GB:X56494, GB:M23725, GB:M26252, SP:P14618, and SP:P14786; identified by sequence similarity; deoxyribodipyrimidine photo-lyase complement(857379..858821) Pseudomonas putida KT2440 1044572 NP_742901.1 CDS PP_0740 NC_002947.3 858812 859711 R identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator complement(858812..859711) Pseudomonas putida KT2440 1044573 NP_742902.1 CDS PP_0741 NC_002947.3 859701 860669 R hypothetical protein complement(859701..860669) Pseudomonas putida KT2440 1044575 NP_742903.1 CDS PP_0742 NC_002947.3 860773 861759 R identified by match to PFAM protein family HMM PF01593; hypothetical protein complement(860773..861759) Pseudomonas putida KT2440 1044577 NP_742904.1 CDS PP_0743 NC_002947.3 861946 862851 D identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase 861946..862851 Pseudomonas putida KT2440 1044578 NP_742905.1 CDS hemH NC_002947.3 862865 863881 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 862865..863881 Pseudomonas putida KT2440 1044580 NP_742906.1 CDS uraA NC_002947.3 863917 865182 R identified by match to PFAM protein family HMM PF00860; uracil-xanthine permease complement(863917..865182) Pseudomonas putida KT2440 1044581 NP_742907.1 CDS upp NC_002947.3 865185 865823 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(865185..865823) Pseudomonas putida KT2440 1044582 NP_742908.1 CDS PP_0747 NC_002947.3 865986 866543 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 865986..866543 Pseudomonas putida KT2440 1044583 NP_742909.1 CDS PP_0748 NC_002947.3 866546 867019 D hypothetical protein 866546..867019 Pseudomonas putida KT2440 1044584 NP_742910.1 CDS PP_0749 NC_002947.3 867071 867541 D hypothetical protein 867071..867541 Pseudomonas putida KT2440 1044585 NP_742911.1 CDS PP_0750 NC_002947.3 867586 867900 D similar to GP:9950895; identified by sequence similarity; hypothetical protein 867586..867900 Pseudomonas putida KT2440 1044586 NP_742912.1 CDS mqo-1 NC_002947.3 868077 869585 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(868077..869585) Pseudomonas putida KT2440 1044587 NP_742913.1 CDS PP_0752 NC_002947.3 870175 870474 D hypothetical protein 870175..870474 Pseudomonas putida KT2440 1044588 NP_742914.1 CDS PP_0753 NC_002947.3 870566 871150 D lipoprotein 870566..871150 Pseudomonas putida KT2440 1044589 NP_742915.1 CDS PP_0754 NC_002947.3 871225 871536 R hypothetical protein complement(871225..871536) Pseudomonas putida KT2440 1044590 NP_742916.1 CDS PP_0755 NC_002947.3 871604 871852 D hypothetical protein 871604..871852 Pseudomonas putida KT2440 1044591 NP_742917.1 CDS PP_0756 NC_002947.3 871888 873159 R identified by match to PFAM protein family HMM PF01553; phospholipid/glycerol acyltransferase complement(871888..873159) Pseudomonas putida KT2440 1044592 NP_742918.1 CDS PP_0757 NC_002947.3 873180 873365 D hypothetical protein 873180..873365 Pseudomonas putida KT2440 1044593 NP_742919.1 CDS PP_0758 NC_002947.3 873641 874261 D similar to GP:9950887; identified by sequence similarity; hypothetical protein 873641..874261 Pseudomonas putida KT2440 1044594 NP_742920.1 CDS PP_0759 NC_002947.3 874420 875259 D identified by match to PFAM protein family HMM PF01435; hypothetical protein 874420..875259 Pseudomonas putida KT2440 1044595 NP_742921.1 CDS PP_0760 NC_002947.3 875305 875889 R identified by match to PFAM protein family HMM PF01169; hypothetical protein complement(875305..875889) Pseudomonas putida KT2440 1044596 NP_742922.1 CDS PP_0761 NC_002947.3 876158 877156 R identified by match to PFAM protein family HMM PF03602; rRNA (guanine-N(2)-)-methyltransferase complement(876158..877156) Pseudomonas putida KT2440 1044597 NP_742923.1 CDS hprA NC_002947.3 877211 878176 R Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase complement(877211..878176) Pseudomonas putida KT2440 1044598 NP_742924.1 CDS PP_0763 NC_002947.3 878470 880152 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 878470..880152 Pseudomonas putida KT2440 1044599 NP_742925.1 CDS PP_0764 NC_002947.3 880287 880478 D hypothetical protein 880287..880478 Pseudomonas putida KT2440 1044600 NP_742926.1 CDS PP_0765 NC_002947.3 880484 882370 D similar to GP:9950108; identified by sequence similarity; hypothetical protein 880484..882370 Pseudomonas putida KT2440 1044601 NP_742927.1 CDS PP_0766 NC_002947.3 882396 883760 D hypothetical protein 882396..883760 Pseudomonas putida KT2440 1044602 NP_742928.1 CDS PP_0767 NC_002947.3 884088 886805 D similar to GP:9950105; identified by sequence similarity; LuxR family transcriptional regulator 884088..886805 Pseudomonas putida KT2440 1044603 NP_742929.1 CDS PP_0768 NC_002947.3 886965 888572 D identified by match to PFAM protein family HMM PF00072; response regulator/hypothetical protein 886965..888572 Pseudomonas putida KT2440 1044604 NP_742930.1 CDS PP_0769 NC_002947.3 888569 889261 D similar to GP:9947604; identified by sequence similarity; histidine kinase 888569..889261 Pseudomonas putida KT2440 1044606 NP_742931.1 CDS PP_0770 NC_002947.3 889455 889709 D PemI-like protein 889455..889709 Pseudomonas putida KT2440 1044607 NP_742932.1 CDS PP_0771 NC_002947.3 889706 890053 D toxin of the ChpB-ChpS toxin-antitoxin system; toxin ChpB 889706..890053 Pseudomonas putida KT2440 1044610 NP_742933.1 CDS PP_0772 NC_002947.3 890072 890716 D identified by match to PFAM protein family HMM PF00753; beta-lactamase domain-containing protein 890072..890716 Pseudomonas putida KT2440 1044611 NP_742934.1 CDS PP_0773 NC_002947.3 890835 891545 D identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 890835..891545 Pseudomonas putida KT2440 1044612 NP_742935.1 CDS pta NC_002947.3 891625 893712 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(891625..893712) Pseudomonas putida KT2440 1044613 NP_742936.1 CDS PP_0775 NC_002947.3 893744 894046 R similar to GB:D14657, and PID:285939; identified by sequence similarity; hypothetical protein complement(893744..894046) Pseudomonas putida KT2440 1044614 NP_742937.1 CDS slyD NC_002947.3 894045 894530 D similar to GB:D90277, GB:L00692, GB:M22433, GB:L00693, GB:D90278, SP:P40198, PID:219537, and PID:553220; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 894045..894530 Pseudomonas putida KT2440 1044615 NP_742938.1 CDS PP_0777 NC_002947.3 894676 895158 D identified by match to PFAM protein family HMM PF00255; glutathione peroxidase 894676..895158 Pseudomonas putida KT2440 1044616 NP_742939.1 CDS PP_0778 NC_002947.3 895222 896412 R identified by match to PFAM protein family HMM PF00534; glycoside hydrolase family protein complement(895222..896412) Pseudomonas putida KT2440 1044617 NP_742940.1 CDS PP_0779 NC_002947.3 896567 897907 D identified by match to TIGR protein family HMM TIGR00229; methyl-accepting chemotaxis transducer/sensory box protein 896567..897907 Pseudomonas putida KT2440 1044618 NP_742941.1 CDS PP_0780 NC_002947.3 897914 898018 D hypothetical protein 897914..898018 Pseudomonas putida KT2440 1044619 NP_742942.1 CDS PP_0781 NC_002947.3 898115 898450 D hypothetical protein 898115..898450 Pseudomonas putida KT2440 1044620 NP_742943.1 CDS PP_0782 NC_002947.3 898923 899546 D hypothetical protein 898923..899546 Pseudomonas putida KT2440 1044621 NP_742944.1 CDS PP_0783 NC_002947.3 899467 899649 R hypothetical protein complement(899467..899649) Pseudomonas putida KT2440 1044622 NP_742945.1 CDS PP_0784 NC_002947.3 899889 900506 D hypothetical protein 899889..900506 Pseudomonas putida KT2440 1044624 NP_742946.1 CDS PP_0785 NC_002947.3 900551 901279 R role in sulfur assimilation; sulfate transport protein CysZ complement(900551..901279) Pseudomonas putida KT2440 1044625 NP_742947.1 CDS trxB NC_002947.3 901610 902572 D similar to SP:P09625; identified by sequence similarity; thioredoxin reductase 901610..902572 Pseudomonas putida KT2440 1044626 NP_742948.1 CDS nadC NC_002947.3 902648 903496 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(902648..903496) Pseudomonas putida KT2440 1044627 NP_742949.1 CDS PP_0788 NC_002947.3 903662 905899 D hypothetical protein 903662..905899 Pseudomonas putida KT2440 1044628 NP_742950.1 CDS ampD NC_002947.3 905988 906560 D similar to GP:4079828, GB:K02765, SP:P01024, PID:179665, and PID:181130; identified by sequence similarity; N-acetyl-anhydromuranmyl-L-alanine amidase 905988..906560 Pseudomonas putida KT2440 1044629 NP_742951.1 CDS PP_0790 NC_002947.3 906557 907387 D signaling modulator of AmpD, AmpE 906557..907387 Pseudomonas putida KT2440 1044630 NP_742952.1 CDS PP_0791 NC_002947.3 907432 908208 R identified by match to TIGR protein family HMM TIGR00010; TatD family deoxyribonuclease complement(907432..908208) Pseudomonas putida KT2440 1044632 NP_742953.1 CDS fruR NC_002947.3 908211 909206 R binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR complement(908211..909206) Pseudomonas putida KT2440 1044633 NP_742954.1 CDS fruB NC_002947.3 909491 912343 D similar to SP:P23388; identified by sequence similarity; phosphoenolpyruvate-protein phosphotransferase 909491..912343 Pseudomonas putida KT2440 1044634 NP_742955.1 CDS fruK NC_002947.3 912344 913291 D similar to GB:L20852, and PID:306772; identified by sequence similarity; 1-phosphofructokinase 912344..913291 Pseudomonas putida KT2440 1044635 NP_742956.1 CDS fruA NC_002947.3 913288 915030 D similar to GB:J04213, GB:L34219, SP:P12271, PID:190854, and PID:598229; identified by sequence similarity; PTS system fructose subfamily transporter subunit IIC 913288..915030 Pseudomonas putida KT2440 1044636 NP_742957.1 CDS PP_0796 NC_002947.3 915178 915465 R hypothetical protein complement(915178..915465) Pseudomonas putida KT2440 1044637 NP_742958.1 CDS PP_0797 NC_002947.3 915538 916077 D hypothetical protein 915538..916077 Pseudomonas putida KT2440 1044639 NP_742959.1 CDS PP_0798 NC_002947.3 916074 917564 R identified by match to PFAM protein family HMM PF00990; diguanylate cyclase complement(916074..917564) Pseudomonas putida KT2440 1044640 NP_742960.1 CDS PP_0799 NC_002947.3 917763 919097 R similar to GP:9945994; identified by sequence similarity; porin complement(917763..919097) Pseudomonas putida KT2440 1044642 NP_742961.1 CDS PP_0800 NC_002947.3 919718 920470 R identified by match to PFAM protein family HMM PF03692; hypothetical protein complement(919718..920470) Pseudomonas putida KT2440 1044643 NP_742962.1 CDS PP_0801 NC_002947.3 920449 920775 R hypothetical protein complement(920449..920775) Pseudomonas putida KT2440 1044644 NP_742963.1 CDS chev-1 NC_002947.3 920849 921748 R similar to GP:5361003; identified by sequence similarity; chemotaxis protein CheV complement(920849..921748) Pseudomonas putida KT2440 1044645 NP_742964.1 CDS PP_0803 NC_002947.3 921841 923025 R similar to GP:9947867; identified by sequence similarity; HlyD family type I secretion membrane fusion protein complement(921841..923025) Pseudomonas putida KT2440 1044646 NP_742965.1 CDS PP_0804 NC_002947.3 923022 925190 R identified by match to PFAM protein family HMM PF00664; protein secretion ABC efflux system, permease and ATP-binding protein complement(923022..925190) Pseudomonas putida KT2440 1044647 NP_742966.1 CDS PP_0805 NC_002947.3 925187 926623 R identified by match to PFAM protein family HMM PF02321; TolC family type I secretion outer membrane protein complement(925187..926623) Pseudomonas putida KT2440 1044650 NP_742967.1 CDS PP_0806 NC_002947.3 926687 945619 R similar to GP:7741985; identified by sequence similarity; surface adhesion protein complement(926687..945619) Pseudomonas putida KT2440 1044651 NP_742968.1 CDS PP_0807 NC_002947.3 945810 947366 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(945810..947366) Pseudomonas putida KT2440 1044652 NP_742969.1 CDS hmpA NC_002947.3 947522 948700 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 947522..948700 Pseudomonas putida KT2440 1044654 NP_742970.1 CDS dsbB NC_002947.3 949157 949663 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 949157..949663 Pseudomonas putida KT2440 1044655 NP_742971.1 CDS cyoups1 NC_002947.3 949729 950085 D cyoups1 protein 949729..950085 Pseudomonas putida KT2440 1044658 NP_742972.1 CDS cyoups2 NC_002947.3 949961 950197 D cyoups2 protein 949961..950197 Pseudomonas putida KT2440 1044660 NP_742973.1 CDS cyoA NC_002947.3 950223 951164 D similar to SP:Q9WWR1, GB:M27504, GB:Z15111, GB:S56813, GB:X68060, GB:Z15115, GB:D17023, SP:Q02880, PID:1354507, PID:2088635, PID:288565, PID:288567, PID:339810, PID:37231, and PID:38325; identified by sequence similarity; ubiquinol oxidase subunit II 950223..951164 Pseudomonas putida KT2440 1044661 NP_742974.1 CDS cyoB NC_002947.3 951168 953186 D similar to SP:Q9WWR2; identified by sequence similarity; cytochrome o ubiquinol oxidase subunit I 951168..953186 Pseudomonas putida KT2440 1044662 NP_742975.1 CDS cyoC NC_002947.3 953190 953813 D similar to SP:Q9WWR3, GB:M38083, GB:M59199, GB:M62783, SP:P17050, PID:1513067, PID:178248, and PID:189055; identified by sequence similarity; cytochrome o ubiquinol oxidase subunit III 953190..953813 Pseudomonas putida KT2440 1044663 NP_742976.1 CDS cyoD NC_002947.3 953813 954145 D similar to SP:Q9WWR4, GB:X66403, SP:Q04844, and PID:560153; identified by sequence similarity; cytochrome o ubiquinol oxidase, protein CyoD 953813..954145 Pseudomonas putida KT2440 1044666 NP_742977.1 CDS cyoE-2 NC_002947.3 954157 955044 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 954157..955044 Pseudomonas putida KT2440 1044667 NP_742978.1 CDS PP_0817 NC_002947.3 955357 956565 D identified by match to TIGR protein family HMM TIGR01141; aminotransferase 955357..956565 Pseudomonas putida KT2440 1044669 NP_742979.1 CDS PP_0818 NC_002947.3 956571 957806 D hypothetical protein 956571..957806 Pseudomonas putida KT2440 1044670 NP_742980.1 CDS PP_0819 NC_002947.3 957968 958351 D identified by match to PFAM protein family HMM PF03692; hypothetical protein 957968..958351 Pseudomonas putida KT2440 1044671 NP_742981.1 CDS PP_0820 NC_002947.3 958544 959107 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 958544..959107 Pseudomonas putida KT2440 1044675 NP_742982.1 CDS PP_0821 NC_002947.3 959730 960140 D similar to GB:M86752, SP:P31948, PID:184565, GB:M86752, SP:P31948, and PID:184565; identified by sequence similarity; hypothetical protein 959730..960140 Pseudomonas putida KT2440 1044676 NP_742983.1 CDS PP_0822 NC_002947.3 960266 961378 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(960266..961378) Pseudomonas putida KT2440 1044677 NP_742984.1 CDS selD NC_002947.3 961378 962412 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(961378..962412) Pseudomonas putida KT2440 1044679 NP_742985.1 CDS PP_0824 NC_002947.3 962539 963393 D similar to GP:9949442, GB:L02932, GB:Y07619, SP:Q07869, PID:1514595, PID:1526972, and PID:307341; identified by sequence similarity; phosphonate ABC transporter substrate-binding protein 962539..963393 Pseudomonas putida KT2440 1044680 NP_742986.1 CDS PP_0825 NC_002947.3 963390 964199 D similar to GB:M83670, SP:P22748, PID:179791, and PID:409726; identified by sequence similarity; phosphate ABC transporter ATP-binding protein 963390..964199 Pseudomonas putida KT2440 1044681 NP_742987.1 CDS PP_0826 NC_002947.3 964193 965020 D similar to SP:P16683; identified by sequence similarity; phosphate ABC transporter permease 964193..965020 Pseudomonas putida KT2440 1044682 NP_742988.1 CDS PP_0827 NC_002947.3 965017 965784 D identified by match to TIGR protein family HMM TIGR01726; phosphonate ABC transporter inner membrane protein 965017..965784 Pseudomonas putida KT2440 1044683 NP_742989.1 CDS PP_0828 NC_002947.3 965821 966792 R similar to GP:8037798, SP:P32109, GB:U15124, and PID:563996; identified by sequence similarity; hypothetical protein complement(965821..966792) Pseudomonas putida KT2440 1044685 NP_742990.1 CDS PP_0829 NC_002947.3 967033 967329 D identified by match to PFAM protein family HMM PF01381; hypothetical protein 967033..967329 Pseudomonas putida KT2440 1044686 NP_742991.1 CDS PP_0830 NC_002947.3 967340 967819 R identified by match to TIGR protein family HMM TIGR01575; acetyltransferase complement(967340..967819) Pseudomonas putida KT2440 1044688 NP_742992.1 CDS PP_0831 NC_002947.3 967987 968718 R identified by match to PFAM protein family HMM PF01087; hypothetical protein complement(967987..968718) Pseudomonas putida KT2440 1044689 NP_742993.1 CDS queA NC_002947.3 969086 970135 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 969086..970135 Pseudomonas putida KT2440 1044690 NP_742994.1 CDS tgt NC_002947.3 970150 971265 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 970150..971265 Pseudomonas putida KT2440 1044691 NP_742995.1 CDS yajC NC_002947.3 971308 971643 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 971308..971643 Pseudomonas putida KT2440 1044692 NP_742996.1 CDS secD NC_002947.3 971707 973569 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 971707..973569 Pseudomonas putida KT2440 1044695 NP_742997.1 CDS secF NC_002947.3 973580 974488 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 973580..974488 Pseudomonas putida KT2440 1044696 NP_742998.1 CDS PP_0837 NC_002947.3 974607 975149 D similar to GP:9949993; identified by sequence similarity; hypothetical protein 974607..975149 Pseudomonas putida KT2440 1044697 NP_742999.1 CDS suhB NC_002947.3 975318 976136 R similar to GB:X56692, GB:M11725, GB:M11880, GB:M35163, SP:P02741, PID:181066, PID:181068, PID:181073, and PID:30213; identified by sequence similarity; inositol-phosphate phosphatase complement(975318..976136) Pseudomonas putida KT2440 1044698 NP_743000.1 CDS PP_0839 NC_002947.3 976288 977043 D identified by match to PFAM protein family HMM PF00588; RNA methyltransferase 976288..977043 Pseudomonas putida KT2440 1044700 NP_743001.1 CDS cysE NC_002947.3 977047 977832 D identified by match to PFAM protein family HMM PF00132; serine O-acetyltransferase 977047..977832 Pseudomonas putida KT2440 1044701 NP_743002.1 CDS PP_0841 NC_002947.3 978012 978503 D identified by match to PFAM protein family HMM PF02082; BadM/Rrf2 family transcriptional regulator 978012..978503 Pseudomonas putida KT2440 1044703 NP_743003.1 CDS iscS NC_002947.3 978549 979763 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 978549..979763 Pseudomonas putida KT2440 1044704 NP_743004.1 CDS iscU NC_002947.3 979810 980196 D identified by match to PFAM protein family HMM PF01592; scaffold protein 979810..980196 Pseudomonas putida KT2440 1044705 NP_743005.1 CDS iscA NC_002947.3 980225 980548 D similar to GB:D90244, PID:216809, GB:D90244, and PID:216809; identified by sequence similarity; iron-sulfur cluster assembly protein IscA 980225..980548 Pseudomonas putida KT2440 1044706 NP_743006.1 CDS hscB NC_002947.3 980557 981078 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 980557..981078 Pseudomonas putida KT2440 1044708 NP_743007.1 CDS hscA NC_002947.3 981122 982984 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 981122..982984 Pseudomonas putida KT2440 1044710 NP_743008.1 CDS PP_0847 NC_002947.3 982988 983329 D similar to SP:P44428; identified by sequence similarity; (2Fe-2S) ferredoxin 982988..983329 Pseudomonas putida KT2440 1044711 NP_743009.1 CDS PP_0848 NC_002947.3 983340 983540 D similar to SP:Q03047, and SP:Q03047; identified by sequence similarity; hypothetical protein 983340..983540 Pseudomonas putida KT2440 1044712 NP_743010.1 CDS ndk NC_002947.3 983629 984054 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 983629..984054 Pseudomonas putida KT2440 1044713 NP_743011.1 CDS PP_0850 NC_002947.3 984083 985228 D identified by match to PFAM protein family HMM PF04055; radical SAM enzyme, Cfr family 984083..985228 Pseudomonas putida KT2440 1044715 NP_743012.1 CDS pilF NC_002947.3 985237 986004 D identified by match to PFAM protein family HMM PF00515; type IV pilus biogenesis/stability protein PilW 985237..986004 Pseudomonas putida KT2440 1044718 NP_743013.1 CDS PP_0852 NC_002947.3 986001 987008 D identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 986001..987008 Pseudomonas putida KT2440 1044719 NP_743014.1 CDS ispG NC_002947.3 987012 988121 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 987012..988121 Pseudomonas putida KT2440 1044720 NP_743015.1 CDS hisS NC_002947.3 988147 989436 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 988147..989436 Pseudomonas putida KT2440 1044721 NP_743016.1 CDS PP_0855 NC_002947.3 989476 990117 D similar to GP:9949974; identified by sequence similarity; hypothetical protein 989476..990117 Pseudomonas putida KT2440 1044723 NP_743017.1 CDS PP_0856 NC_002947.3 990118 991260 D identified by match to PFAM protein family HMM PF01011; hypothetical protein 990118..991260 Pseudomonas putida KT2440 1044724 NP_743018.1 CDS engA NC_002947.3 991377 992840 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 991377..992840 Pseudomonas putida KT2440 1044725 NP_743019.1 CDS PP_0858 NC_002947.3 992992 994140 D catalyzes the transfer of an amino moiety; aminotransferase 992992..994140 Pseudomonas putida KT2440 1044727 NP_743020.1 CDS PP_0859 NC_002947.3 994128 994919 D identified by match to PFAM protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 994128..994919 Pseudomonas putida KT2440 1044729 NP_743021.1 CDS PP_0860 NC_002947.3 995044 997593 R similar to SP:P38039, SP:P16169, GB:X51944, and PID:457801; identified by sequence similarity; flavodoxin/nitric oxide synthase complement(995044..997593) Pseudomonas putida KT2440 1044731 NP_743022.1 CDS PP_0861 NC_002947.3 997825 1000167 R identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor complement(997825..1000167) Pseudomonas putida KT2440 1044732 NP_743023.1 CDS PP_0862 NC_002947.3 1000338 1001018 D identified by match to PFAM protein family HMM PF03171; hydroxylase 1000338..1001018 Pseudomonas putida KT2440 1044734 NP_743024.1 CDS PP_0863 NC_002947.3 1001022 1001792 D Sel1 domain-containing protein repeat-containing protein 1001022..1001792 Pseudomonas putida KT2440 1044737 NP_743025.1 CDS PP_0864 NC_002947.3 1001821 1002936 R similar to SP:P06118, PID:38731, and PID:38756; identified by sequence similarity; ornithine decarboxylase complement(1001821..1002936) Pseudomonas putida KT2440 1044738 NP_743026.1 CDS PP_0865 NC_002947.3 1003492 1003977 D identified by match to PFAM protein family HMM PF00776; ECF subfamily RNA polymerase sigma-24 subunit 1003492..1003977 Pseudomonas putida KT2440 1044741 NP_743027.1 CDS PP_0866 NC_002947.3 1003974 1004960 D similar to GP:9947237; identified by sequence similarity; FecR anti-FecI sigma factor 1003974..1004960 Pseudomonas putida KT2440 1044743 NP_743028.1 CDS PP_0867 NC_002947.3 1005069 1007498 D similar to GB:Z24721, PID:1147590, PID:394739, and PID:404251; identified by sequence similarity; FecA-like outer membrane receptor 1005069..1007498 Pseudomonas putida KT2440 1044744 NP_743029.1 CDS PP_0868 NC_002947.3 1007588 1008745 R identified by match to TIGR protein family HMM TIGR00968; glycine betaine/L-proline ABC transporter ATPase complement(1007588..1008745) Pseudomonas putida KT2440 1044745 NP_743030.1 CDS PP_0869 NC_002947.3 1008742 1009395 R identified by match to PFAM protein family HMM PF04306; binding-protein-dependent transport system inner membrane protein complement(1008742..1009395) Pseudomonas putida KT2440 1044746 NP_743031.1 CDS PP_0870 NC_002947.3 1009392 1010333 R identified by match to PFAM protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein complement(1009392..1010333) Pseudomonas putida KT2440 1044747 NP_743032.1 CDS PP_0871 NC_002947.3 1010317 1011060 R identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein complement(1010317..1011060) Pseudomonas putida KT2440 1044748 NP_743033.1 CDS prfC NC_002947.3 1011587 1013170 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1011587..1013170 Pseudomonas putida KT2440 1044749 NP_743034.1 CDS PP_0873 NC_002947.3 1013301 1014380 R identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein complement(1013301..1014380) Pseudomonas putida KT2440 1044751 NP_743035.1 CDS PP_0874 NC_002947.3 1014433 1014774 R hypothetical protein complement(1014433..1014774) Pseudomonas putida KT2440 1044752 NP_743036.1 CDS PP_0875 NC_002947.3 1014808 1016238 R similar to GP:9949563; identified by sequence similarity; FAD dependent oxidoreductase complement(1014808..1016238) Pseudomonas putida KT2440 1044753 NP_743037.1 CDS PP_0876 NC_002947.3 1016279 1017103 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(1016279..1017103) Pseudomonas putida KT2440 1044756 NP_743038.1 CDS PP_0877 NC_002947.3 1017155 1017250 R hypothetical protein complement(1017155..1017250) Pseudomonas putida KT2440 1044758 NP_743039.1 CDS dppF NC_002947.3 1018090 1019058 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(1018090..1019058) Pseudomonas putida KT2440 1044759 NP_743040.1 CDS dppD NC_002947.3 1019058 1020026 R identified by match to TIGR protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATPase complement(1019058..1020026) Pseudomonas putida KT2440 1044760 NP_743041.1 CDS dppC NC_002947.3 1020037 1020963 R identified by match to PFAM protein family HMM PF04172; binding-protein-dependent transport system inner membrane protein complement(1020037..1020963) Pseudomonas putida KT2440 1044761 NP_743042.1 CDS dppB NC_002947.3 1020974 1021984 R identified by match to TIGR protein family HMM TIGR01726; alkaline phosphatase complement(1020974..1021984) Pseudomonas putida KT2440 1044762 NP_743043.1 CDS dppA NC_002947.3 1022076 1023710 R similar to GB:L11353, GB:Z22664, GB:X72655, SP:P35240, PID:292292, PID:312043, and PID:825719; identified by sequence similarity; peptide ABC transporter substrate-binding protein complement(1022076..1023710) Pseudomonas putida KT2440 1044764 NP_743044.1 CDS PP_0883 NC_002947.3 1023765 1025144 R identified by match to PFAM protein family HMM PF03573; porin complement(1023765..1025144) Pseudomonas putida KT2440 1044767 NP_743045.1 CDS PP_0884 NC_002947.3 1025373 1026965 R identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein complement(1025373..1026965) Pseudomonas putida KT2440 1044769 NP_743046.1 CDS PP_0885 NC_002947.3 1027112 1028737 R identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein complement(1027112..1028737) Pseudomonas putida KT2440 1044770 NP_743047.1 CDS PP_0886 NC_002947.3 1029118 1029834 R hypothetical protein complement(1029118..1029834) Pseudomonas putida KT2440 1044772 NP_743048.1 CDS PP_0887 NC_002947.3 1029941 1031293 D identified by match to PFAM protein family HMM PF04093; integral membrane sensor signal transduction histidine kinase 1029941..1031293 Pseudomonas putida KT2440 1044773 NP_743049.1 CDS PP_0888 NC_002947.3 1031293 1031853 D identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator 1031293..1031853 Pseudomonas putida KT2440 1044774 NP_743050.1 CDS PP_0889 NC_002947.3 1031905 1033041 D beta-lactamase 1031905..1033041 Pseudomonas putida KT2440 1044777 NP_743051.1 CDS PP_0890 NC_002947.3 1033038 1033334 D hypothetical protein 1033038..1033334 Pseudomonas putida KT2440 1044778 NP_743052.1 CDS PP_0891 NC_002947.3 1033379 1033960 D similar to GP:9950566; identified by sequence similarity; hypothetical protein 1033379..1033960 Pseudomonas putida KT2440 1044779 NP_743053.1 CDS PP_0892 NC_002947.3 1033962 1035119 D identified by match to PFAM protein family HMM PF00614; phospholipase 1033962..1035119 Pseudomonas putida KT2440 1044780 NP_743054.1 CDS PP_0893 NC_002947.3 1035162 1035749 D identified by match to TIGR protein family HMM TIGR01737; Pfpi family intracellular protease 1035162..1035749 Pseudomonas putida KT2440 1044781 NP_743055.1 CDS PP_0894 NC_002947.3 1035780 1036178 R similar to GP:15075332; identified by sequence similarity; hypothetical protein complement(1035780..1036178) Pseudomonas putida KT2440 1044782 NP_743056.1 CDS PP_0895 NC_002947.3 1036294 1036884 D similar to GB:M81461, SP:P27028, SP:P27195, GB:X63674, PID:148698, GB:M81461, SP:P27028, SP:P27195, GB:X63674, and PID:148698; identified by sequence similarity; hypothetical protein 1036294..1036884 Pseudomonas putida KT2440 1044783 NP_743057.1 CDS PP_0896 NC_002947.3 1036881 1037753 D similar to GB:D10980, SP:P27028, SP:P27195, GB:X63674, PID:216707, and PID:456523; identified by sequence similarity; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1036881..1037753 Pseudomonas putida KT2440 1044784 NP_743058.1 CDS PP_0897 NC_002947.3 1037869 1039392 R similar to GP:9950558, and SP:P00923; identified by sequence similarity; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha complement(1037869..1039392) Pseudomonas putida KT2440 1044785 NP_743059.1 CDS PP_0898 NC_002947.3 1039407 1039577 R hypothetical protein complement(1039407..1039577) Pseudomonas putida KT2440 1044786 NP_743060.1 CDS PP_0899 NC_002947.3 1039642 1040562 D similar to GP:9950556; identified by sequence similarity; hypothetical protein 1039642..1040562 Pseudomonas putida KT2440 1044787 NP_743061.1 CDS PP_0900 NC_002947.3 1040604 1041332 R similar to GP:9950612; identified by sequence similarity; PAP2 family protein complement(1040604..1041332) Pseudomonas putida KT2440 1044789 NP_743062.1 CDS colR NC_002947.3 1041516 1042199 D similar to GB:M98830, SP:P25520, GB:X59940, PID:146073, PID:42026, GB:U00096, PID:1651627, PID:1651636, PID:1787488, PID:1805513, GB:M98830, SP:P25520, GB:X59940, PID:146073, PID:42026, GB:U00096, PID:1651627, PID:1651636, PID:1787488, and PID:1805513; identified by sequence similarity; winged helix family two component transcriptional regulator 1041516..1042199 Pseudomonas putida KT2440 1044792 NP_743063.1 CDS PP_0902 NC_002947.3 1042156 1043499 D similar to GP:13892069, GB:M84993, SP:P26462, GB:X52093, and PID:154021; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 1042156..1043499 Pseudomonas putida KT2440 1044793 NP_743064.1 CDS PP_0903 NC_002947.3 1043607 1044287 D similar to GB:D21144, PID:415277, PID:882432, SP:P52037, PID:2160242, PID:2367175, GB:D21144, PID:415277, PID:882432, SP:P52037, PID:2160242, and PID:2367175; identified by sequence similarity; type 11 methyltransferase 1043607..1044287 Pseudomonas putida KT2440 1044794 NP_743065.1 CDS PP_0904 NC_002947.3 1044291 1044992 D lipopolysaccharide kinase 1044291..1044992 Pseudomonas putida KT2440 1044795 NP_743066.1 CDS PP_0905 NC_002947.3 1044992 1045225 D hypothetical protein 1044992..1045225 Pseudomonas putida KT2440 1044796 NP_743067.1 CDS PP_0906 NC_002947.3 1045331 1048375 R MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein complement(1045331..1048375) Pseudomonas putida KT2440 1044798 NP_743068.1 CDS PP_0907 NC_002947.3 1048377 1049597 R identified by match to TIGR protein family HMM TIGR01730; RND efflux membrane fusion protein-like protein complement(1048377..1049597) Pseudomonas putida KT2440 1044801 NP_743069.1 CDS PP_0908 NC_002947.3 1049753 1050850 R similar to GP:9950602; identified by sequence similarity; hypothetical protein complement(1049753..1050850) Pseudomonas putida KT2440 1044803 NP_743070.1 CDS PP_0909 NC_002947.3 1050853 1051917 R hypothetical protein complement(1050853..1051917) Pseudomonas putida KT2440 1044805 NP_743071.1 CDS PP_0910 NC_002947.3 1051937 1053364 R hypothetical protein complement(1051937..1053364) Pseudomonas putida KT2440 1044806 NP_743072.1 CDS PP_0911 NC_002947.3 1053474 1053860 R hypothetical protein complement(1053474..1053860) Pseudomonas putida KT2440 1044809 NP_743073.1 CDS PP_0912 NC_002947.3 1053874 1054461 R hypothetical protein complement(1053874..1054461) Pseudomonas putida KT2440 1044810 NP_743074.1 CDS PP_0913 NC_002947.3 1054498 1055829 R similar to GP:9950599; identified by sequence similarity; hypothetical protein complement(1054498..1055829) Pseudomonas putida KT2440 1044812 NP_743075.1 CDS PP_0914 NC_002947.3 1055988 1058069 R identified by match to PFAM protein family HMM PF00990; diguanylate cyclase complement(1055988..1058069) Pseudomonas putida KT2440 1044813 NP_743076.1 CDS sodB NC_002947.3 1058289 1058885 R similar to GP:1498060, SP:P04741, GB:X03923, GB:Z37500, PID:537154, PID:581086, PID:732682, GB:U00096, PID:1790768, and PID:1816486; identified by sequence similarity; superoxide dismutase complement(1058289..1058885) Pseudomonas putida KT2440 1044816 NP_743077.1 CDS PP_0916 NC_002947.3 1059152 1059766 R identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE complement(1059152..1059766) Pseudomonas putida KT2440 1044817 NP_743078.1 CDS PP_0917 NC_002947.3 1059853 1060743 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1059853..1060743 Pseudomonas putida KT2440 1044819 NP_743079.1 CDS PP_0918 NC_002947.3 1060793 1061785 D identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase 1060793..1061785 Pseudomonas putida KT2440 1044820 NP_743080.1 CDS PP_0919 NC_002947.3 1062198 1062728 D similar to GP:9950588, and GP:9950588; identified by sequence similarity; hypothetical protein 1062198..1062728 Pseudomonas putida KT2440 1044821 NP_743081.1 CDS xenB NC_002947.3 1062837 1063886 R similar to GP:6049283, and GP:6049283; identified by sequence similarity; NADH:flavin oxidoreductase complement(1062837..1063886) Pseudomonas putida KT2440 1044822 NP_743082.1 CDS PP_0921 NC_002947.3 1063904 1064206 R similar to GB:M63573, GB:M60857, GB:M60457, SP:P23284, PID:181250, PID:181335, and PID:337999; identified by sequence similarity; ArsR family transcriptional regulator complement(1063904..1064206) Pseudomonas putida KT2440 1044823 NP_743083.1 CDS PP_0922 NC_002947.3 1064357 1064941 D hypothetical protein 1064357..1064941 Pseudomonas putida KT2440 1044824 NP_743084.1 CDS PP_0923 NC_002947.3 1065054 1065842 R identified by match to TIGR protein family HMM TIGR00530; phospholipid/glycerol acyltransferase complement(1065054..1065842) Pseudomonas putida KT2440 1044825 NP_743085.1 CDS PP_0924 NC_002947.3 1065842 1066597 R similar to GP:9950577; identified by sequence similarity; hypothetical protein complement(1065842..1066597) Pseudomonas putida KT2440 1044826 NP_743086.1 CDS PP_0925 NC_002947.3 1066758 1067645 D similar to GP:9950576; identified by sequence similarity; hypothetical protein 1066758..1067645 Pseudomonas putida KT2440 1044828 NP_743087.1 CDS PP_0926 NC_002947.3 1067833 1068780 D similar to GB:M68878, SP:Q00853, and PID:144879; identified by sequence similarity; auxin efflux carrier 1067833..1068780 Pseudomonas putida KT2440 1044829 NP_743088.1 CDS aroP NC_002947.3 1068837 1070198 D similar to GB:J05272, SP:P20839, and PID:307067; identified by sequence similarity; amino acid ABC transporter permease 1068837..1070198 Pseudomonas putida KT2440 1044830 NP_743089.1 CDS PP_0928 NC_002947.3 1070340 1071383 R similar to GB:U22314, PID:1621501, PID:606944, and PID:606948; identified by sequence similarity; CaCA family Na+/Ca+ antiporter complement(1070340..1071383) Pseudomonas putida KT2440 1044831 NP_743090.1 CDS PP_0929 NC_002947.3 1071444 1071818 R similar to GP:4887206; identified by sequence similarity; rare lipoprotein A complement(1071444..1071818) Pseudomonas putida KT2440 1044832 NP_743091.1 CDS gatB NC_002947.3 1071945 1073390 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1071945..1073390) Pseudomonas putida KT2440 1044833 NP_743092.1 CDS gatA NC_002947.3 1073402 1074853 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1073402..1074853) Pseudomonas putida KT2440 1044835 NP_743093.2 CDS gatC NC_002947.3 1074869 1075156 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1074869..1075156) Pseudomonas putida KT2440 1044838 NP_743094.2 CDS mreB NC_002947.3 1075362 1076399 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1075362..1076399 Pseudomonas putida KT2440 1044840 NP_743095.1 CDS mreC NC_002947.3 1076620 1077618 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1076620..1077618 Pseudomonas putida KT2440 1044842 NP_743096.1 CDS mreD NC_002947.3 1077615 1078106 D identified by match to PFAM protein family HMM PF04093; rod shape-determining protein MreD 1077615..1078106 Pseudomonas putida KT2440 1044843 NP_743097.1 CDS maf NC_002947.3 1078139 1078750 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1078139..1078750 Pseudomonas putida KT2440 1044844 NP_743098.1 CDS cafA NC_002947.3 1078804 1080261 D similar to GB:M14058, SP:P00736, PID:179644, and PID:29539; identified by sequence similarity; Rne/Rng family ribonuclease 1078804..1080261 Pseudomonas putida KT2440 1044846 NP_743099.1 CDS PP_0938 NC_002947.3 1080344 1084165 D similar to GP:9950713; identified by sequence similarity; hypothetical protein 1080344..1084165 Pseudomonas putida KT2440 1044847 NP_743100.1 CDS PP_0939 NC_002947.3 1084174 1085025 D identified by match to PFAM protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1084174..1085025 Pseudomonas putida KT2440 1044848 NP_743101.1 CDS tldD NC_002947.3 1085028 1086467 D similar to GB:M22995, GB:X12533, SP:P10113, PID:35859, PID:412180, and PID:511856; identified by sequence similarity; tldD protein 1085028..1086467 Pseudomonas putida KT2440 1044850 NP_743102.1 CDS PP_0941 NC_002947.3 1086525 1087046 R similar to GP:9950710; identified by sequence similarity; hypothetical protein complement(1086525..1087046) Pseudomonas putida KT2440 1044851 NP_743103.1 CDS pmbA NC_002947.3 1087144 1088502 D similar to GB:V00566, GB:J00299, GB:M29386, GB:D00411, SP:P01236, GB:U75583, PID:1620399, PID:1658518, PID:190354, PID:190356, PID:220018, PID:34211, PID:531101, and PID:531103; identified by sequence similarity; pmbA protein 1087144..1088502 Pseudomonas putida KT2440 1044852 NP_743104.1 CDS fagA NC_002947.3 1088756 1089148 D similar to GB:X78425, and PID:467806; identified by sequence similarity; hypothetical protein 1088756..1089148 Pseudomonas putida KT2440 1044854 NP_743105.1 CDS fumC NC_002947.3 1089138 1090517 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1089138..1090517 Pseudomonas putida KT2440 1044855 NP_743106.1 CDS PP_0945 NC_002947.3 1090545 1091006 D similar to GP:4704563; identified by sequence similarity; hypothetical protein 1090545..1091006 Pseudomonas putida KT2440 1044858 NP_743107.1 CDS sodA NC_002947.3 1090987 1091619 D similar to GP:4581922, SP:P28017, GB:X62377, and PID:39657; identified by sequence similarity; superoxide dismutase 1090987..1091619 Pseudomonas putida KT2440 1044859 NP_743108.1 CDS PP_0947 NC_002947.3 1091616 1092524 D identified by match to PFAM protein family HMM PF03591; zinc/iron permease 1091616..1092524 Pseudomonas putida KT2440 1044861 NP_743109.1 CDS ptsO NC_002947.3 1092552 1092824 R similar to GP:4138365; identified by sequence similarity; phosphotransferase system, phosphocarrier protein HPr complement(1092552..1092824) Pseudomonas putida KT2440 1044862 NP_743110.1 CDS PP_0949 NC_002947.3 1092843 1093697 R similar to GP:4138364; identified by sequence similarity; hypothetical protein complement(1092843..1093697) Pseudomonas putida KT2440 1044863 NP_743111.1 CDS ptsN NC_002947.3 1093700 1094164 R similar to GB:X63575, PID:2193884, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(1093700..1094164) Pseudomonas putida KT2440 1044865 NP_743112.1 CDS rpoX NC_002947.3 1094177 1094485 R similar to PIR:S06713, GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, and PID:576683; identified by sequence similarity; sigma 54 modulation protein/ribosomal protein S30EA complement(1094177..1094485) Pseudomonas putida KT2440 1044866 NP_743113.1 CDS rpoN NC_002947.3 1094565 1096058 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(1094565..1096058) Pseudomonas putida KT2440 1044867 NP_743114.1 CDS PP_0953 NC_002947.3 1096234 1096959 R identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein complement(1096234..1096959) Pseudomonas putida KT2440 1044868 NP_743115.1 CDS PP_0954 NC_002947.3 1096960 1097484 R identified by match to PFAM protein family HMM PF03968; hypothetical protein complement(1096960..1097484) Pseudomonas putida KT2440 1044869 NP_743116.1 CDS PP_0955 NC_002947.3 1097471 1098043 R hypothetical protein complement(1097471..1098043) Pseudomonas putida KT2440 1044871 NP_743117.1 CDS PP_0956 NC_002947.3 1098052 1098576 R identified by match to TIGR protein family HMM TIGR01662; YrbI family phosphatase complement(1098052..1098576) Pseudomonas putida KT2440 1044872 NP_743118.1 CDS PP_0957 NC_002947.3 1098589 1099563 R identified by match to PFAM protein family HMM PF01380; KpsF/GutQ family protein complement(1098589..1099563) Pseudomonas putida KT2440 1044873 NP_743119.1 CDS ttg2A NC_002947.3 1099812 1100621 D similar to GP:4336798, and GP:4336798; identified by sequence similarity; toluene tolerance ABC efflux transporter ATP-binding protein 1099812..1100621 Pseudomonas putida KT2440 1044874 NP_743120.1 CDS ttg2B NC_002947.3 1100618 1101418 D similar to GP:4336799, and GP:4336799; identified by sequence similarity; hypothetical protein 1100618..1101418 Pseudomonas putida KT2440 1044875 NP_743121.1 CDS ttg2C NC_002947.3 1101418 1101903 D similar to GP:4336800, and GP:4336800; identified by sequence similarity; hypothetical protein 1101418..1101903 Pseudomonas putida KT2440 1044877 NP_743122.1 CDS ttg2D NC_002947.3 1101913 1102560 D similar to GP:4336801, and GP:4336801; identified by sequence similarity; toluene tolerance family protein 1101913..1102560 Pseudomonas putida KT2440 1044880 NP_743123.1 CDS ttg2E NC_002947.3 1102557 1102859 D similar to GP:4336802, and GP:4336802; identified by sequence similarity; toluene-tolerance protein 1102557..1102859 Pseudomonas putida KT2440 1044881 NP_743124.1 CDS ttg2F NC_002947.3 1102977 1103216 D similar to GP:4336803, and GP:4336803; identified by sequence similarity; BolA family protein 1102977..1103216 Pseudomonas putida KT2440 1044882 NP_743125.1 CDS murA NC_002947.3 1103240 1104505 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1103240..1104505 Pseudomonas putida KT2440 1044883 NP_743126.1 CDS hisG NC_002947.3 1104597 1105232 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 1104597..1105232 Pseudomonas putida KT2440 1044884 NP_743127.1 CDS hisD NC_002947.3 1105519 1106844 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1105519..1106844 Pseudomonas putida KT2440 1044886 NP_743128.1 CDS hisC NC_002947.3 1106847 1107893 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1106847..1107893 Pseudomonas putida KT2440 1044887 NP_743129.1 CDS PP_0968 NC_002947.3 1108009 1109250 R identified by match to PFAM protein family HMM PF01676; hypothetical protein complement(1108009..1109250) Pseudomonas putida KT2440 1044888 NP_743130.1 CDS PP_0969 NC_002947.3 1109333 1109983 D similar to GP:2961083; identified by sequence similarity; GntR family transcriptional regulator 1109333..1109983 Pseudomonas putida KT2440 1044889 NP_743131.1 CDS PP_0970 NC_002947.3 1109973 1111277 D similar to GP:2961082; identified by sequence similarity; cyanate transporter 1109973..1111277 Pseudomonas putida KT2440 1044890 NP_743132.1 CDS PP_0971 NC_002947.3 1111387 1111863 D identified by match to PFAM protein family HMM PF02136; hypothetical protein 1111387..1111863 Pseudomonas putida KT2440 1044891 NP_743133.1 CDS PP_0972 NC_002947.3 1111880 1112197 D similar to GB:L05096, and PID:337413; identified by sequence similarity; GIY-YIG nuclease superfamily protein 1111880..1112197 Pseudomonas putida KT2440 1044892 NP_743134.1 CDS ndpA NC_002947.3 1112145 1113152 R similar to SP:P33920; identified by sequence similarity; nucleoid-associated protein NdpA complement(1112145..1113152) Pseudomonas putida KT2440 1044893 NP_743135.1 CDS PP_0974 NC_002947.3 1113202 1113531 D identified by match to PFAM protein family HMM PF04067; hypothetical protein 1113202..1113531 Pseudomonas putida KT2440 1044894 NP_743136.1 CDS hupN NC_002947.3 1113522 1113803 D similar to GP:14028719; identified by sequence similarity; histone family protein DNA-binding protein 1113522..1113803 Pseudomonas putida KT2440 1044896 NP_743137.1 CDS PP_0976 NC_002947.3 1113851 1114804 R similar to SP:P75782; identified by sequence similarity; SAM-dependent methyltransferase complement(1113851..1114804) Pseudomonas putida KT2440 1044897 NP_743138.1 CDS valS NC_002947.3 1114983 1117829 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1114983..1117829) Pseudomonas putida KT2440 1044898 NP_743139.1 CDS PP_0978 NC_002947.3 1117913 1118278 R hypothetical protein complement(1117913..1118278) Pseudomonas putida KT2440 1044899 NP_743140.1 CDS holC NC_002947.3 1118284 1118712 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1118284..1118712) Pseudomonas putida KT2440 1044902 NP_743141.1 CDS pepA NC_002947.3 1118763 1120256 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1118763..1120256) Pseudomonas putida KT2440 1044903 NP_743142.1 CDS PP_0981 NC_002947.3 1120241 1120432 R hypothetical protein complement(1120241..1120432) Pseudomonas putida KT2440 1044905 NP_743143.1 CDS PP_0982 NC_002947.3 1120558 1121673 D similar to GP:9950003; identified by sequence similarity; YjgP/YjgQ family permease 1120558..1121673 Pseudomonas putida KT2440 1044907 NP_743144.1 CDS PP_0983 NC_002947.3 1121666 1122727 D similar to GB:J04168, GB:M61827, SP:P16150, PID:180126, PID:307124, PID:338231, and PID:36456; identified by sequence similarity; YjgP/YjgQ family permease 1121666..1122727 Pseudomonas putida KT2440 1044908 NP_743145.1 CDS PP_0984 NC_002947.3 1122874 1123362 R similar to GP:9950001; identified by sequence similarity; RDD domain-containing protein complement(1122874..1123362) Pseudomonas putida KT2440 1044909 NP_743146.1 CDS PP_0985 NC_002947.3 1123452 1123949 R similar to SP:P31667, PID:606346, GB:U00096, and PID:1789816; identified by sequence similarity; cold-shock domain-contain protein complement(1123452..1123949) Pseudomonas putida KT2440 1044910 NP_743147.1 CDS gcvT-1 NC_002947.3 1124019 1125140 R similar to SP:O49849; identified by sequence similarity; glycine cleavage system T protein complement(1124019..1125140) Pseudomonas putida KT2440 1044911 NP_743148.1 CDS sda-2 NC_002947.3 1125168 1126544 R similar to SP:P42630; identified by sequence similarity; L-serine dehydratase 1 complement(1125168..1126544) Pseudomonas putida KT2440 1044912 NP_743149.1 CDS gcvP-1 NC_002947.3 1126693 1129548 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1126693..1129548) Pseudomonas putida KT2440 1044914 NP_743150.1 CDS gcvH NC_002947.3 1129560 1129943 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1129560..1129943) Pseudomonas putida KT2440 1044915 NP_743151.1 CDS PP_0990 NC_002947.3 1130247 1130633 R identified by match to PFAM protein family HMM PF04173; DoxX family protein complement(1130247..1130633) Pseudomonas putida KT2440 1044916 NP_743152.1 CDS PP_0991 NC_002947.3 1130707 1131480 R hypothetical protein complement(1130707..1131480) Pseudomonas putida KT2440 1044917 NP_743153.1 CDS PP_0992 NC_002947.3 1131477 1132310 R hypothetical protein complement(1131477..1132310) Pseudomonas putida KT2440 1044919 NP_743154.1 CDS PP_0993 NC_002947.3 1132327 1132614 R similar to GP:15140382; identified by sequence similarity; hypothetical protein complement(1132327..1132614) Pseudomonas putida KT2440 1044920 NP_743155.2 CDS PP_0994 NC_002947.3 1132838 1133422 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1132838..1133422 Pseudomonas putida KT2440 1044922 NP_743156.1 CDS PP_0995 NC_002947.3 1133412 1134053 D identified by match to PFAM protein family HMM PF04066; hypothetical protein 1133412..1134053 Pseudomonas putida KT2440 1044924 NP_743157.1 CDS gltS NC_002947.3 1134131 1135336 R identified by match to PFAM protein family HMM PF03616; sodium/glutamate symporter complement(1134131..1135336) Pseudomonas putida KT2440 1044926 NP_743158.1 CDS PP_0997 NC_002947.3 1135464 1136972 R identified by match to PFAM protein family HMM PF00989; Fis family transcriptional regulator complement(1135464..1136972) Pseudomonas putida KT2440 1044927 NP_743159.1 CDS PP_0998 NC_002947.3 1137113 1137541 R hypothetical protein complement(1137113..1137541) Pseudomonas putida KT2440 1044928 NP_743160.1 CDS arcC NC_002947.3 1137538 1138467 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(1137538..1138467) Pseudomonas putida KT2440 1044929 NP_743161.1 CDS argI NC_002947.3 1138632 1139642 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(1138632..1139642) Pseudomonas putida KT2440 1044931 NP_743162.1 CDS arcA NC_002947.3 1139712 1140965 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(1139712..1140965) Pseudomonas putida KT2440 1044932 NP_743163.1 CDS arcD NC_002947.3 1140999 1142426 R similar to GB:Z21958, GB:M25668, GB:L12563, GB:U01828, SP:P11137, GB:U32995, GB:U34059, GB:U34061, GB:U34064, GB:U34065, GB:U34069, GB:U34060, GB:U34062, GB:U34063, GB:U34066, PID:1850617, PID:187381, and PID:409875; identified by sequence similarity; arginine/ornithine antiporter complement(1140999..1142426) Pseudomonas putida KT2440 1044933 NP_743164.1 CDS PP_1003 NC_002947.3 1142863 1144290 D similar to GB:Z21958, GB:M25668, GB:L12563, GB:U01828, SP:P11137, GB:U32995, GB:U34059, GB:U34061, GB:U34064, GB:U34065, GB:U34069, GB:U34060, GB:U34062, GB:U34063, GB:U34066, PID:1850617, PID:187381, and PID:409875; identified by sequence similarity; arginine/ornithine antiporter 1142863..1144290 Pseudomonas putida KT2440 1044934 NP_743165.1 CDS PP_1004 NC_002947.3 1144270 1144683 R similar to GB:M15660, SP:P12256, and PID:143306; identified by sequence similarity; hypothetical protein complement(1144270..1144683) Pseudomonas putida KT2440 1044935 NP_743166.1 CDS hemO NC_002947.3 1144738 1145331 R similar to GP:3091146, and GP:8163798; identified by sequence similarity; heme oxygenase complement(1144738..1145331) Pseudomonas putida KT2440 1044938 NP_743167.1 CDS PP_1006 NC_002947.3 1145472 1147751 R similar to GP:4838477; identified by sequence similarity; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor complement(1145472..1147751) Pseudomonas putida KT2440 1044939 NP_743168.1 CDS PP_1007 NC_002947.3 1148187 1149242 R FecR anti-FecI sigma factor complement(1148187..1149242) Pseudomonas putida KT2440 1044940 NP_743169.1 CDS PP_1008 NC_002947.3 1149239 1149751 R ECF subfamily RNA polymerase sigma factor complement(1149239..1149751) Pseudomonas putida KT2440 1044941 NP_743170.1 CDS gap-1 NC_002947.3 1150008 1151009 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1150008..1151009) Pseudomonas putida KT2440 1041585 NP_743171.1 CDS edd NC_002947.3 1151274 1153100 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1151274..1153100 Pseudomonas putida KT2440 1044125 NP_743172.1 CDS glk NC_002947.3 1153097 1154056 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1153097..1154056 Pseudomonas putida KT2440 1043976 NP_743173.1 CDS gltR-2 NC_002947.3 1154135 1154860 D similar to GB:L10328, SP:P26218, PID:290568, GB:L10328, SP:P26218, and PID:290568; identified by sequence similarity; winged helix family two component transcriptional regulator 1154135..1154860 Pseudomonas putida KT2440 1043979 NP_743174.1 CDS PP_1013 NC_002947.3 1154841 1156295 D identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 1154841..1156295 Pseudomonas putida KT2440 1043972 NP_743175.1 CDS PP_1014 NC_002947.3 1156511 1157761 D similar to GB:M95678, SP:Q00722, PID:190040, GB:M95678, SP:Q00722, and PID:190040; identified by sequence similarity; hypothetical protein 1156511..1157761 Pseudomonas putida KT2440 1044048 NP_743176.1 CDS PP_1015 NC_002947.3 1157866 1159152 D identified by match to PFAM protein family HMM PF01547; sugar ABC transporter substrate-binding protein 1157866..1159152 Pseudomonas putida KT2440 1043966 NP_743177.1 CDS PP_1016 NC_002947.3 1159286 1160194 D similar to GP:4090539, and GP:4090539; identified by sequence similarity; ABC transporter permease 1159286..1160194 Pseudomonas putida KT2440 1044004 NP_743178.1 CDS PP_1017 NC_002947.3 1160187 1161032 D identified by match to TIGR protein family HMM TIGR01095; binding-protein-dependent transport system inner membrane protein 1160187..1161032 Pseudomonas putida KT2440 1044176 NP_743179.1 CDS PP_1018 NC_002947.3 1161036 1162190 D identified by match to TIGR protein family HMM TIGR01187; sugar ABC transporter ATP-binding protein 1161036..1162190 Pseudomonas putida KT2440 1044180 NP_743180.1 CDS oprB-1 NC_002947.3 1162231 1163574 D similar to GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, SP:P13500, GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, and SP:P13500; identified by sequence similarity; porin 1162231..1163574 Pseudomonas putida KT2440 1044055 NP_743181.1 CDS PP_1020 NC_002947.3 1163692 1164546 D similar to GP:9949303; identified by sequence similarity; aldose 1-epimerase 1163692..1164546 Pseudomonas putida KT2440 1044015 NP_743182.2 CDS hexR NC_002947.3 1164539 1165411 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(1164539..1165411) Pseudomonas putida KT2440 1043998 NP_743183.1 CDS zwf-1 NC_002947.3 1165614 1167083 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1165614..1167083 Pseudomonas putida KT2440 1044167 NP_743184.1 CDS pgl NC_002947.3 1167055 1167783 D catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 1167055..1167783 Pseudomonas putida KT2440 1043987 NP_743185.1 CDS eda NC_002947.3 1167774 1168481 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1167774..1168481 Pseudomonas putida KT2440 1044085 NP_743186.1 CDS leuA NC_002947.3 1168734 1170407 R similar to SP:P42455; identified by sequence similarity; 2-isopropylmalate synthase complement(1168734..1170407) Pseudomonas putida KT2440 1044236 NP_743187.1 CDS PP_1026 NC_002947.3 1170840 1171667 R similar to GP:9949959; identified by sequence similarity; M24/M37 family peptidase complement(1170840..1171667) Pseudomonas putida KT2440 1044237 NP_743188.1 CDS xseA NC_002947.3 1171671 1173050 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1171671..1173050) Pseudomonas putida KT2440 1044154 NP_743189.1 CDS PP_1028 NC_002947.3 1173145 1174023 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(1173145..1174023) Pseudomonas putida KT2440 1044126 NP_743190.1 CDS PP_1029 NC_002947.3 1174121 1174876 D identified by match to PFAM protein family HMM PF01925; hypothetical protein 1174121..1174876 Pseudomonas putida KT2440 1044117 NP_743191.1 CDS PP_1030 NC_002947.3 1174924 1175481 D similar to GP:8894736; identified by sequence similarity; hypothetical protein 1174924..1175481 Pseudomonas putida KT2440 1044216 NP_743192.1 CDS guaB NC_002947.3 1175568 1177037 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1175568..1177037 Pseudomonas putida KT2440 1044148 NP_743193.1 CDS guaA NC_002947.3 1177116 1178693 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1177116..1178693 Pseudomonas putida KT2440 1044098 NP_743194.1 CDS PP_1033 NC_002947.3 1178787 1180775 R identified by match to PFAM protein family HMM PF00884; sulfatase complement(1178787..1180775) Pseudomonas putida KT2440 1044328 NP_743195.1 CDS cumA NC_002947.3 1180946 1182352 D similar to GP:4580028, and GP:4580028; identified by sequence similarity; multicopper oxidase 1180946..1182352 Pseudomonas putida KT2440 1044226 NP_743196.1 CDS cumB NC_002947.3 1182394 1182831 D similar to GP:4580029, and GP:4580029; identified by sequence similarity; cumB protein 1182394..1182831 Pseudomonas putida KT2440 1044218 NP_743197.1 CDS PP_1036 NC_002947.3 1182925 1184274 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase complement(1182925..1184274) Pseudomonas putida KT2440 1044173 NP_743198.1 CDS purL NC_002947.3 1184794 1188693 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1184794..1188693 Pseudomonas putida KT2440 1044327 NP_743199.1 CDS PP_1038 NC_002947.3 1188697 1189008 D similar to GP:9949932; identified by sequence similarity; hypothetical protein 1188697..1189008 Pseudomonas putida KT2440 1044313 NP_743200.1 CDS tatC-1 NC_002947.3 1189050 1189811 R similar to GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; Sec-independent protein translocase subunit TatC complement(1189050..1189811) Pseudomonas putida KT2440 1044232 NP_743201.1 CDS PP_1040 NC_002947.3 1189808 1190098 R similar to GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; twin-arginine translocation protein subunit TatB complement(1189808..1190098) Pseudomonas putida KT2440 1044161 NP_743202.1 CDS tatA-1 NC_002947.3 1190098 1190331 R similar to GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; twin-arginine translocation protein TatA complement(1190098..1190331) Pseudomonas putida KT2440 1044379 NP_743203.1 CDS xcpX NC_002947.3 1190477 1191442 D similar to GP:3978485, GB:L20861, SP:P41221, and PID:348918; identified by sequence similarity; general secretion pathway protein K 1190477..1191442 Pseudomonas putida KT2440 1044397 NP_743204.1 CDS uxpB NC_002947.3 1191572 1193647 R similar to GB:X13589, GB:Y07508, GB:M22246, GB:S85356, GB:M74714, GB:J04127, GB:M30795, GB:M30796, GB:M30797, GB:M30798, GB:M30799, GB:M30800, GB:M30801, GB:M30802, GB:M30803, GB:M30804, GB:M18856, GB:M28420, GB:S58866, GB:S85075, GB:S52793, GB:M32245, GB:X55983, GB:D14473, GB:S67206, GB:L21982, GB:S52789, and SP:P11511; identified by sequence similarity; hypothetical protein complement(1191572..1193647) Pseudomonas putida KT2440 1044233 NP_743205.1 CDS uxpA NC_002947.3 1193860 1195512 D lipoprotein UxpA 1193860..1195512 Pseudomonas putida KT2440 1044440 NP_743206.1 CDS xcpP NC_002947.3 1195509 1195934 D similar to GB:M32793, SP:P15977, PID:146715, PID:606351, GB:U00096, PID:1789821, GB:M32793, SP:P15977, PID:146715, PID:606351, GB:U00096, and PID:1789821; identified by sequence similarity; type II secretion pathway protein XcpP 1195509..1195934 Pseudomonas putida KT2440 1044337 NP_743207.1 CDS xcpQ NC_002947.3 1195938 1197692 D similar to GB:M62400, SP:P24046, PID:182911, GB:M62400, SP:P24046, and PID:182911; identified by sequence similarity; general secretion pathway protein D 1195938..1197692 Pseudomonas putida KT2440 1044347 NP_743208.1 CDS xcpR NC_002947.3 1197689 1199140 D identified by match to TIGR protein family HMM TIGR01420; type II secretion system protein E 1197689..1199140 Pseudomonas putida KT2440 1044282 NP_743209.1 CDS xcpS-1 NC_002947.3 1199144 1200346 D similar to GB:M61856, GB:X56452, GB:L16869, GB:L16870, GB:L16871, GB:L16872, GB:L16873, GB:L16874, GB:L16875, GB:L16876, SP:P33260, PID:181300, PID:306327, PID:433672, GB:M61856, GB:X56452, GB:L16869, GB:L16870, GB:L16871, GB:L16872, GB:L16873, GB:L16874, GB:L16875, GB:L16876, SP:P33260, PID:181300, PID:306327, and PID:433672; identified by sequence similarity; general secretion pathway protein F 1199144..1200346 Pseudomonas putida KT2440 1044322 NP_743210.1 CDS xcpT-1 NC_002947.3 1200343 1200798 D similar to GP:3297910, and GP:3297910; identified by sequence similarity; general secretion pathway protein G 1200343..1200798 Pseudomonas putida KT2440 1044442 NP_743211.1 CDS xcpU NC_002947.3 1200802 1201233 D similar to GP:3293033, and GP:3293033; identified by sequence similarity; general secretion pathway protein H 1200802..1201233 Pseudomonas putida KT2440 1044522 NP_743212.1 CDS xcpV NC_002947.3 1201191 1201598 D similar to GP:3293034, and GP:3293034; identified by sequence similarity; type II secretion system protein I/J 1201191..1201598 Pseudomonas putida KT2440 1044558 NP_743213.1 CDS xcpW NC_002947.3 1201595 1202185 D similar to GP:3293035, and GP:3293035; identified by sequence similarity; type II secretion pathway protein XcpW 1201595..1202185 Pseudomonas putida KT2440 1044623 NP_743214.1 CDS xcpY NC_002947.3 1202170 1203258 D similar to GP:3293036; identified by sequence similarity; general secretion pathway protein L 1202170..1203258 Pseudomonas putida KT2440 1044476 NP_743215.1 CDS xcpZ NC_002947.3 1203255 1203641 D similar to GP:3293037, and GP:3293037; identified by sequence similarity; type II secretion pathway protein XcpZ 1203255..1203641 Pseudomonas putida KT2440 1044310 NP_743216.1 CDS gspN NC_002947.3 1203656 1204300 D similar to GP:3293038, and GP:3293038; identified by sequence similarity; type II secretion pathway protein GspN 1203656..1204300 Pseudomonas putida KT2440 1044362 NP_743217.1 CDS PP_1056 NC_002947.3 1204460 1205221 R similar to GP:11127894, GB:D10483, SP:P08203, GB:M15263, GB:M62646, GB:X56048, PID:145306, PID:147317, PID:216481, PID:40939, GB:U00096, and PID:1786247; identified by sequence similarity; iron-chelator utilization protein complement(1204460..1205221) Pseudomonas putida KT2440 1044641 NP_743218.1 CDS PP_1057 NC_002947.3 1205214 1205759 R similar to GP:9968714, GB:K01316, SP:P01857, SP:P01859, SP:P01860, SP:P01861, PID:184759, PID:185291, PID:2414492, PID:2414494, PID:567112, PID:577056, and PID:683576; identified by sequence similarity; PadR family transcriptional regulator complement(1205214..1205759) Pseudomonas putida KT2440 1044668 NP_743219.1 CDS PP_1058 NC_002947.3 1205849 1208998 R identified by match to PFAM protein family HMM PF00912; hypothetical protein complement(1205849..1208998) Pseudomonas putida KT2440 1044673 NP_743220.1 CDS PP_1059 NC_002947.3 1209390 1210808 D identified by match to TIGR protein family HMM TIGR00913; amino acid permease 1209390..1210808 Pseudomonas putida KT2440 1044674 NP_743221.1 CDS PP_1060 NC_002947.3 1210845 1212464 R similar to SP:P35646, GB:Z12609, and PID:41331; identified by sequence similarity; glutamate synthase, large subunit complement(1210845..1212464) Pseudomonas putida KT2440 1044657 NP_743222.1 CDS PP_1061 NC_002947.3 1212652 1216956 R similar to GB:M76979, GB:M90439, GB:U29953, SP:P36955, PID:1144299, and PID:1732049; identified by sequence similarity; DEAD/DEAH box helicase complement(1212652..1216956) Pseudomonas putida KT2440 1044425 NP_743223.1 CDS PP_1062 NC_002947.3 1217093 1217506 D identified by match to TIGR protein family HMM TIGR00586; NUDIX hydrolase 1217093..1217506 Pseudomonas putida KT2440 1044513 NP_743224.1 CDS metR-1 NC_002947.3 1217490 1218407 R similar to GB:X59618, SP:P31350, and PID:36155; identified by sequence similarity; transcriptional activator MetR complement(1217490..1218407) Pseudomonas putida KT2440 1044499 NP_743225.1 CDS PP_1064 NC_002947.3 1218462 1219598 D identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 1218462..1219598 Pseudomonas putida KT2440 1044709 NP_743226.1 CDS PP_1065 NC_002947.3 1219616 1219951 R GlpM family protein complement(1219616..1219951) Pseudomonas putida KT2440 1044714 NP_743227.1 CDS PP_1066 NC_002947.3 1219975 1221303 R identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator complement(1219975..1221303) Pseudomonas putida KT2440 1044699 NP_743228.1 CDS PP_1067 NC_002947.3 1221300 1223207 R identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase complement(1221300..1223207) Pseudomonas putida KT2440 1044716 NP_743229.1 CDS PP_1068 NC_002947.3 1223273 1224043 R similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; amino acid ABC transporter ATP-binding protein complement(1223273..1224043) Pseudomonas putida KT2440 1044717 NP_743230.1 CDS PP_1069 NC_002947.3 1224004 1224675 R similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit complement(1224004..1224675) Pseudomonas putida KT2440 1044678 NP_743231.1 CDS PP_1070 NC_002947.3 1224676 1225422 R identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit complement(1224676..1225422) Pseudomonas putida KT2440 1044967 NP_743232.1 CDS PP_1071 NC_002947.3 1225568 1226488 R similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; amino acid ABC transporter substrate-binding protein complement(1225568..1226488) Pseudomonas putida KT2440 1044664 NP_743233.1 CDS PP_1072 NC_002947.3 1226819 1231138 D identified by match to PFAM protein family HMM PF00560; hypothetical protein 1226819..1231138 Pseudomonas putida KT2440 1044672 NP_743234.1 CDS glpD NC_002947.3 1231166 1232710 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(1231166..1232710) Pseudomonas putida KT2440 1045009 NP_743235.1 CDS glpR NC_002947.3 1232927 1233682 R similar to GP:3358093, SP:P33178, SP:P00457, and PID:142057; identified by sequence similarity; DeoR family transcriptional regulator complement(1232927..1233682) Pseudomonas putida KT2440 1044730 NP_743236.1 CDS glpK NC_002947.3 1233784 1235283 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(1233784..1235283) Pseudomonas putida KT2440 1044814 NP_743237.1 CDS glpF NC_002947.3 1235335 1236186 R similar to GP:3299802, and GP:3299802; identified by sequence similarity; MIP family channel protein complement(1235335..1236186) Pseudomonas putida KT2440 1044845 NP_743238.1 CDS PP_1077 NC_002947.3 1236489 1236959 D similar to GB:U14003, SP:P09743, GB:M60917, PID:147309, PID:537224, GB:U00096, and PID:1790844; identified by sequence similarity; ybaK/ebsC protein 1236489..1236959 Pseudomonas putida KT2440 1044735 NP_743239.1 CDS PP_1078 NC_002947.3 1236997 1238106 R identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein complement(1236997..1238106) Pseudomonas putida KT2440 1045042 NP_743240.1 CDS argF NC_002947.3 1238103 1239023 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1238103..1239023) Pseudomonas putida KT2440 1044722 NP_743241.1 CDS PP_1080 NC_002947.3 1239398 1241506 D identified by match to PFAM protein family HMM PF00384; molydopterin dinucleotide-binding region 1239398..1241506 Pseudomonas putida KT2440 1044693 NP_743242.1 CDS PP_1081 NC_002947.3 1241598 1241933 D identified by match to TIGR protein family HMM TIGR00365; glutaredoxin-like protein 1241598..1241933 Pseudomonas putida KT2440 1045132 NP_743243.1 CDS bfr NC_002947.3 1241991 1242464 R similar to GB:X69292, GB:S67240, SP:P35749, PID:2104553, PID:2352947, and PID:36507; identified by sequence similarity; bacterioferritin complement(1241991..1242464) Pseudomonas putida KT2440 1045026 NP_743244.1 CDS PP_1083 NC_002947.3 1242664 1242882 R similar to GB:S45627, GB:S45629, GB:S45636, GB:S45637, GB:S45639, GB:S45640, GB:S45635, GB:M16594, GB:X65726, GB:X65727, GB:X65728, GB:X65729, GB:X65730, GB:X65731, GB:X65732, SP:P08263, SP:P09210, PID:306811, PID:825605, and PID:825606; identified by sequence similarity; BFD (2Fe-2S)-binding domain-containing protein complement(1242664..1242882) Pseudomonas putida KT2440 1045102 NP_743245.1 CDS PP_1084 NC_002947.3 1243107 1243709 D identified by match to PFAM protein family HMM PF00578; anti-oxidant AhpCTSA family protein 1243107..1243709 Pseudomonas putida KT2440 1045103 NP_743246.1 CDS rnt NC_002947.3 1243808 1244419 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1243808..1244419) Pseudomonas putida KT2440 1045053 NP_743247.1 CDS pyrC NC_002947.3 1244479 1245525 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1244479..1245525) Pseudomonas putida KT2440 1045131 NP_743248.1 CDS PP_1087 NC_002947.3 1245644 1246597 D identified by match to PFAM protein family HMM PF00691; OmpA family outer membrane protein 1245644..1246597 Pseudomonas putida KT2440 1045169 NP_743249.1 CDS argG NC_002947.3 1246968 1248185 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1246968..1248185 Pseudomonas putida KT2440 1045159 NP_743250.1 CDS PP_1089 NC_002947.3 1248253 1248735 R hypothetical protein complement(1248253..1248735) Pseudomonas putida KT2440 1045206 NP_743251.1 CDS PP_1090 NC_002947.3 1249102 1249725 D similar to GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, PID:530884, GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, and PID:530884; identified by sequence similarity; LuxR family transcriptional regulator 1249102..1249725 Pseudomonas putida KT2440 1045150 NP_743252.1 CDS PP_1091 NC_002947.3 1249796 1249972 R similar to GP:9949642; identified by sequence similarity; hypothetical protein complement(1249796..1249972) Pseudomonas putida KT2440 1045207 NP_743253.1 CDS nth NC_002947.3 1250077 1250715 R identified by match to PFAM protein family HMM PF00730; endonuclease III complement(1250077..1250715) Pseudomonas putida KT2440 1045203 NP_743254.1 CDS PP_1093 NC_002947.3 1250720 1251268 R identified by match to PFAM protein family HMM PF02508; hypothetical protein complement(1250720..1251268) Pseudomonas putida KT2440 1045205 NP_743255.1 CDS PP_1094 NC_002947.3 1251237 1251839 R identified by match to PFAM protein family HMM PF04205; RnfABCDGE type electron transport complex subunit G complement(1251237..1251839) Pseudomonas putida KT2440 1045210 NP_743256.1 CDS PP_1095 NC_002947.3 1251836 1252807 R identified by match to PFAM protein family HMM PF03116; RnfABCDGE type electron transport complex subunit D complement(1251836..1252807) Pseudomonas putida KT2440 1045209 NP_743257.1 CDS PP_1096 NC_002947.3 1252804 1253352 R similar to GB:X54107, and PID:48759; identified by sequence similarity; hypothetical protein complement(1252804..1253352) Pseudomonas putida KT2440 1045208 NP_743258.1 CDS metG NC_002947.3 1253459 1255498 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1253459..1255498) Pseudomonas putida KT2440 1045214 NP_743259.1 CDS PP_1098 NC_002947.3 1255657 1256751 D similar to SP:P45135; identified by sequence similarity; ATP-binding Mrp/Nbp35 family protein 1255657..1256751 Pseudomonas putida KT2440 1045239 NP_743260.1 CDS PP_1099 NC_002947.3 1256919 1257128 R similar to GP:13625473, GB:M84993, SP:P26462, GB:X52093, and PID:154021; identified by sequence similarity; cold-shock domain-contain protein complement(1256919..1257128) Pseudomonas putida KT2440 1045218 NP_743261.1 CDS dcd NC_002947.3 1257456 1258022 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1257456..1258022 Pseudomonas putida KT2440 1045219 NP_743262.1 CDS PP_1101 NC_002947.3 1258084 1258344 D hypothetical protein 1258084..1258344 Pseudomonas putida KT2440 1045215 NP_743263.1 CDS PP_1102 NC_002947.3 1258351 1259001 R identified by match to PFAM protein family HMM PF00149; hypothetical protein complement(1258351..1259001) Pseudomonas putida KT2440 1045231 NP_743264.1 CDS PP_1103 NC_002947.3 1258998 1261448 R similar to GB:X56013, and PID:42450; identified by sequence similarity; DEAD/DEAH box helicase complement(1258998..1261448) Pseudomonas putida KT2440 1045221 NP_743265.1 CDS PP_1104 NC_002947.3 1261517 1262632 R succinylglutamate desuccinylase/aspartoacylase complement(1261517..1262632) Pseudomonas putida KT2440 1045220 NP_743266.1 CDS PP_1105 NC_002947.3 1262746 1264404 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(1262746..1264404) Pseudomonas putida KT2440 1045250 NP_743267.1 CDS PP_1106 NC_002947.3 1264401 1265417 R similar to GP:15075932; identified by sequence similarity; RNA processing exonuclease complement(1264401..1265417) Pseudomonas putida KT2440 1045251 NP_743268.1 CDS PP_1107 NC_002947.3 1265456 1265566 D hypothetical protein 1265456..1265566 Pseudomonas putida KT2440 1045232 NP_743269.1 CDS PP_1108 NC_002947.3 1265544 1267985 R identified by match to PFAM protein family HMM PF01804; acylase complement(1265544..1267985) Pseudomonas putida KT2440 1045236 NP_743270.1 CDS PP_1109 NC_002947.3 1268089 1269429 R identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator complement(1268089..1269429) Pseudomonas putida KT2440 1045226 NP_743271.1 CDS PP_1110 NC_002947.3 1269764 1270315 D identified by match to PFAM protein family HMM PF00132; serine O-acetyltransferase 1269764..1270315 Pseudomonas putida KT2440 1045245 NP_743272.1 CDS PP_1111 NC_002947.3 1270312 1271100 D identified by match to PFAM protein family HMM PF01411; synthetase 1270312..1271100 Pseudomonas putida KT2440 1045223 NP_743273.1 CDS PP_1112 NC_002947.3 1271097 1272308 D similar to GP:9947836; identified by sequence similarity; major facilitator superfamily protein 1271097..1272308 Pseudomonas putida KT2440 1045233 NP_743274.1 CDS PP_1113 NC_002947.3 1272305 1273207 D similar to GP:9858119; identified by sequence similarity; pyridoxal-phosphate dependent enzyme family protein 1272305..1273207 Pseudomonas putida KT2440 1045227 NP_743275.1 CDS PP_1114 NC_002947.3 1273375 1273572 R similar to GP:9946947; identified by sequence similarity; SEC-C domain-containing protein complement(1273375..1273572) Pseudomonas putida KT2440 1045238 NP_743276.1 CDS PP_1115 NC_002947.3 1273580 1274083 R lipoprotein complement(1273580..1274083) Pseudomonas putida KT2440 1045240 NP_743277.1 CDS PP_1116 NC_002947.3 1276657 1277367 R similar to GB:M14107, GB:M10133, SP:P08716, SP:P10089, GB:M81823, PID:146380, PID:146383, and PID:150683; identified by sequence similarity; resolvase site-specific recombinase complement(1276657..1277367) Pseudomonas putida KT2440 1045248 NP_743278.1 CDS PP_1117 NC_002947.3 1278734 1279993 R hypothetical protein complement(1278734..1279993) Pseudomonas putida KT2440 1045247 NP_743279.1 CDS PP_1118 NC_002947.3 1281215 1282906 R similar to SP:Q01624, and PID:46680; identified by sequence similarity; recombinase-like protein complement(1281215..1282906) Pseudomonas putida KT2440 1045244 NP_743280.1 CDS PP_1119 NC_002947.3 1282925 1283407 R identified by match to PFAM protein family HMM PF02810; hypothetical protein complement(1282925..1283407) Pseudomonas putida KT2440 1045234 NP_743281.1 CDS PP_1120 NC_002947.3 1283407 1283901 R identified by match to PFAM protein family HMM PF00126; hypothetical protein complement(1283407..1283901) Pseudomonas putida KT2440 1045256 NP_743282.1 CDS PP_1121 NC_002947.3 1284061 1284753 D identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 1284061..1284753 Pseudomonas putida KT2440 1045249 NP_743283.1 CDS PP_1122 NC_002947.3 1284768 1285562 D identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 1284768..1285562 Pseudomonas putida KT2440 1045258 NP_743284.1 CDS PP_1123 NC_002947.3 1285661 1285936 D hypothetical protein 1285661..1285936 Pseudomonas putida KT2440 1045253 NP_743285.1 CDS PP_1124 NC_002947.3 1286053 1286517 R hypothetical protein complement(1286053..1286517) Pseudomonas putida KT2440 1045261 NP_743286.1 CDS dinG NC_002947.3 1286616 1288760 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1286616..1288760 Pseudomonas putida KT2440 1045260 NP_743287.1 CDS PP_1126 NC_002947.3 1288726 1291074 D similar to GB:X00734, SP:P04350, SP:P05217, SP:P07437, PID:35959, PID:496887, and PID:897763; identified by sequence similarity; Beta-agarase 1288726..1291074 Pseudomonas putida KT2440 1045259 NP_743288.1 CDS estC NC_002947.3 1291208 1292353 D similar to GB:X07881, SP:P02812, SP:P04281, PID:296669, GB:U09060, GB:U09061, PID:483862, PID:483864, PID:520411, PID:553383, PID:553384, PID:563395, PID:563399, PID:563411, PID:563415, PID:563424, PID:563426, PID:563428, PID:563430, PID:563434, PID:563446, PID:563466, PID:563475, PID:563479, PID:563483, PID:563485, PID:609461, PID:836630, PID:860982, PID:940525, PID:951285, and PID:976302; identified by sequence similarity; beta-lactamase 1291208..1292353 Pseudomonas putida KT2440 1045267 NP_743289.1 CDS PP_1128 NC_002947.3 1292396 1293430 D identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein 1292396..1293430 Pseudomonas putida KT2440 1045352 NP_743290.1 CDS pdxH NC_002947.3 1293450 1294097 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1293450..1294097 Pseudomonas putida KT2440 1045279 NP_743291.1 CDS PP_1130 NC_002947.3 1294137 1294442 R hypothetical protein complement(1294137..1294442) Pseudomonas putida KT2440 1045293 NP_743292.1 CDS PP_1131 NC_002947.3 1294518 1294982 D similar to GP:5758657; identified by sequence similarity; hypothetical protein 1294518..1294982 Pseudomonas putida KT2440 1045442 NP_743293.1 CDS nhaA NC_002947.3 1295052 1296245 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(1295052..1296245) Pseudomonas putida KT2440 1045300 NP_743294.1 CDS PP_1133 NC_002947.3 1296811 1298139 D similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 1296811..1298139 Pseudomonas putida KT2440 1045440 NP_743295.1 CDS PP_1134 NC_002947.3 1298568 1300175 R identified by match to TIGR protein family HMM TIGR00136; FAD dependent oxidoreductase complement(1298568..1300175) Pseudomonas putida KT2440 1045433 NP_743296.1 CDS PP_1135 NC_002947.3 1300279 1301019 R hypothetical protein complement(1300279..1301019) Pseudomonas putida KT2440 1045308 NP_743297.1 CDS PP_1136 NC_002947.3 1301249 1302550 D similar to GP:8571415, and GP:8571415; identified by sequence similarity; hypothetical protein 1301249..1302550 Pseudomonas putida KT2440 1045439 NP_743298.1 CDS braG NC_002947.3 1302672 1303373 R identified by match to TIGR protein family HMM TIGR00968; branched chain amino acid ABC transporter ATP-binding protein complement(1302672..1303373) Pseudomonas putida KT2440 1045466 NP_743299.1 CDS livG NC_002947.3 1303374 1304141 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(1303374..1304141) Pseudomonas putida KT2440 1045264 NP_743300.1 CDS livM NC_002947.3 1304138 1305394 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(1304138..1305394) Pseudomonas putida KT2440 1045255 NP_743301.1 CDS braD NC_002947.3 1305391 1306314 R similar to GB:M30515, GB:M63599, GB:M20009, GB:X17290, GB:X17288, GB:X17369, GB:X17289, GB:M13577, GB:M30047, GB:M30516, GB:L18865, GB:L18866, GB:X17286, GB:X17287, SP:P02686, PID:187403, and PID:307161; identified by sequence similarity; inner-membrane translocator complement(1305391..1306314) Pseudomonas putida KT2440 1045471 NP_743302.1 CDS braC NC_002947.3 1306500 1307615 R similar to GB:Z11566, GB:J04991, GB:X53305, GB:M31303, GB:D28428, GB:X94912, SP:P16949, PID:1246757, PID:189388, PID:189426, PID:35595, and PID:57870; identified by sequence similarity; ABC transporter substrate-binding protein complement(1306500..1307615) Pseudomonas putida KT2440 1045445 NP_743303.1 CDS PP_1142 NC_002947.3 1307909 1308286 D hypothetical protein 1307909..1308286 Pseudomonas putida KT2440 1045443 NP_743304.1 CDS PP_1143 NC_002947.3 1308479 1309366 D identified by match to TIGR protein family HMM TIGR01505; 3-hydroxyisobutyrate dehydrogenase 1308479..1309366 Pseudomonas putida KT2440 1045459 NP_743305.1 CDS PP_1144 NC_002947.3 1309266 1311530 R identified by match to PFAM protein family HMM PF00990; diguanylate cyclase complement(1309266..1311530) Pseudomonas putida KT2440 1045464 NP_743306.1 CDS hepA NC_002947.3 1311808 1314654 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(1311808..1314654) Pseudomonas putida KT2440 1045495 NP_743307.1 CDS PP_1146 NC_002947.3 1314805 1315500 D hypothetical protein 1314805..1315500 Pseudomonas putida KT2440 1045480 NP_743308.1 CDS PP_1147 NC_002947.3 1315564 1315893 D hypothetical protein 1315564..1315893 Pseudomonas putida KT2440 1045379 NP_743309.1 CDS PP_1148 NC_002947.3 1315929 1316123 D hypothetical protein 1315929..1316123 Pseudomonas putida KT2440 1045478 NP_743310.1 CDS PP_1149 NC_002947.3 1316259 1316375 D hypothetical protein 1316259..1316375 Pseudomonas putida KT2440 1045674 NP_743311.1 CDS PP_1150 NC_002947.3 1316581 1318569 D similar to GP:9949434; identified by sequence similarity; fusaric acid resistance protein 1316581..1318569 Pseudomonas putida KT2440 1045675 NP_743312.1 CDS PP_1151 NC_002947.3 1318556 1318762 D hypothetical protein 1318556..1318762 Pseudomonas putida KT2440 1045499 NP_743313.1 CDS PP_1152 NC_002947.3 1318775 1319644 D identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein 1318775..1319644 Pseudomonas putida KT2440 1045482 NP_743314.1 CDS PP_1153 NC_002947.3 1319610 1320128 D hypothetical protein 1319610..1320128 Pseudomonas putida KT2440 1045453 NP_743315.1 CDS PP_1154 NC_002947.3 1320143 1322728 R identified by match to PFAM protein family HMM PF00563; sensory box protein complement(1320143..1322728) Pseudomonas putida KT2440 1045664 NP_743316.1 CDS PP_1155 NC_002947.3 1322780 1323853 R similar to GP:7242806, GB:X59244, GB:X52358, SP:P17038, SP:P17040, SP:P28160, PID:184450, PID:38032, PID:930090, and PID:930092; identified by sequence similarity; diguanylate cyclase complement(1322780..1323853) Pseudomonas putida KT2440 1045469 NP_743317.1 CDS PP_1156 NC_002947.3 1324132 1325028 R identified by match to PFAM protein family HMM PF01226; formate/nitrate transporter complement(1324132..1325028) Pseudomonas putida KT2440 1045504 NP_743318.1 CDS PP_1157 NC_002947.3 1330774 1332417 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1330774..1332417 Pseudomonas putida KT2440 1045508 NP_743319.1 CDS PP_1159 NC_002947.3 1333673 1334827 D identified by match to PFAM protein family HMM PF03631; hypothetical protein 1333673..1334827 Pseudomonas putida KT2440 1045670 NP_743320.1 CDS PP_1160 NC_002947.3 1334824 1335813 D similar to GP:10174241; identified by sequence similarity; asparaginase/glutaminase 1334824..1335813 Pseudomonas putida KT2440 1045685 NP_743321.1 CDS PP_1161 NC_002947.3 1335785 1336456 D similar to GB:J04208, GB:L08114, GB:L33842, SP:P12268, PID:1702964, PID:292240, PID:307066, and PID:602458; identified by sequence similarity; metal-binding protein 1335785..1336456 Pseudomonas putida KT2440 1045687 NP_743322.1 CDS PP_1162 NC_002947.3 1336626 1337255 D similar to GB:X04588, GB:J00312, GB:M12128, SP:P12324, PID:37424, and PID:553799; identified by sequence similarity; glutathione S-transferase 1336626..1337255 Pseudomonas putida KT2440 1045699 NP_743323.1 CDS PP_1163 NC_002947.3 1337283 1339319 D identified by match to PFAM protein family HMM PF00970; FAD-binding oxidoreductase 1337283..1339319 Pseudomonas putida KT2440 1045689 NP_743324.1 CDS PP_1164 NC_002947.3 1339428 1340324 D similar to GP:3169721; identified by sequence similarity; LysR family transcriptional regulator 1339428..1340324 Pseudomonas putida KT2440 1045668 NP_743325.1 CDS PP_1165 NC_002947.3 1340397 1341266 R similar to GP:14523095; identified by sequence similarity; aldose 1-epimerase complement(1340397..1341266) Pseudomonas putida KT2440 1045705 NP_743326.1 CDS PP_1166 NC_002947.3 1341291 1342214 R identified by match to PFAM protein family HMM PF03450; hypothetical protein complement(1341291..1342214) Pseudomonas putida KT2440 1045794 NP_743327.1 CDS PP_1167 NC_002947.3 1342269 1343549 R similar to GP:2224837, GB:L20121, GB:L20122, GB:Z23115, SP:Q07817, PID:510901, and PID:623237; identified by sequence similarity; TRAP dicarboxylate transporter subunit DctM complement(1342269..1343549) Pseudomonas putida KT2440 1045720 NP_743328.2 CDS PP_1168 NC_002947.3 1343550 1344077 R similar to GP:15140814, SP:P25060, GB:X56183, and PID:45442; identified by sequence similarity; TRAP dicarboxylate transporter DctQ subunit complement(1343550..1344077) Pseudomonas putida KT2440 1045721 NP_743329.1 CDS dctP NC_002947.3 1344144 1345115 R similar to GP:10173315; identified by sequence similarity; TRAP dicarboxylate transporter subunit DctP complement(1344144..1345115) Pseudomonas putida KT2440 1045711 NP_743330.1 CDS PP_1170 NC_002947.3 1345180 1346061 R similar to GP:7414553, and GP:15073038; identified by sequence similarity; SMP-30/gluconolaconase/LRE domain-containing protein complement(1345180..1346061) Pseudomonas putida KT2440 1045777 NP_743331.1 CDS PP_1171 NC_002947.3 1346084 1346890 R similar to GP:5420005, and GP:15160260; identified by sequence similarity; NAD-dependent epimerase/dehydratase complement(1346084..1346890) Pseudomonas putida KT2440 1045739 NP_743332.1 CDS PP_1172 NC_002947.3 1346975 1347190 D hypothetical protein 1346975..1347190 Pseudomonas putida KT2440 1045722 NP_743333.1 CDS PP_1173 NC_002947.3 1347294 1348532 R similar to GP:5091482; identified by sequence similarity; porin complement(1347294..1348532) Pseudomonas putida KT2440 1045751 NP_743334.1 CDS PP_1174 NC_002947.3 1349286 1349420 R hypothetical protein complement(1349286..1349420) Pseudomonas putida KT2440 1045867 NP_743335.1 CDS PP_1175 NC_002947.3 1350102 1350197 R hypothetical protein complement(1350102..1350197) Pseudomonas putida KT2440 1045778 NP_743336.1 CDS PP_1176 NC_002947.3 1350397 1350531 R hypothetical protein complement(1350397..1350531) Pseudomonas putida KT2440 1045769 NP_743337.1 CDS nrdB NC_002947.3 1350532 1351782 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(1350532..1351782) Pseudomonas putida KT2440 1045865 NP_743338.1 CDS PP_1178 NC_002947.3 1352224 1352487 R similar to GP:6689151; identified by sequence similarity; hypothetical protein complement(1352224..1352487) Pseudomonas putida KT2440 1045740 NP_743339.1 CDS nrdA NC_002947.3 1352495 1355374 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1352495..1355374) Pseudomonas putida KT2440 1045795 NP_743340.1 CDS PP_1180 NC_002947.3 1355585 1355731 D hypothetical protein 1355585..1355731 Pseudomonas putida KT2440 1045887 NP_743341.1 CDS PP_1181 NC_002947.3 1356123 1356821 D similar to GP:9947080, and GP:9947080; identified by sequence similarity; winged helix family two component transcriptional regulator 1356123..1356821 Pseudomonas putida KT2440 1045882 NP_743342.1 CDS PP_1182 NC_002947.3 1356818 1358425 D identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 1356818..1358425 Pseudomonas putida KT2440 1045871 NP_743343.1 CDS PP_1183 NC_002947.3 1358429 1359130 R similar to GB:M12272, GB:X04299, GB:X04350, GB:M37068, SP:P00325, SP:P00326, SP:P07327, PID:178148, PID:28404, PID:598143, and PID:825622; identified by sequence similarity; 4'-phosphopantetheinyl transferase complement(1358429..1359130) Pseudomonas putida KT2440 1045836 NP_743344.1 CDS PP_1184 NC_002947.3 1359212 1360009 R identified by match to PFAM protein family HMM PF01738; dienelactone hydrolase complement(1359212..1360009) Pseudomonas putida KT2440 1045881 NP_743345.1 CDS oprH NC_002947.3 1360133 1360738 D outer membrane protein H1 1360133..1360738 Pseudomonas putida KT2440 1045841 NP_743346.1 CDS phoP NC_002947.3 1360935 1361612 D similar to GB:X12387, SP:P05184, SP:P08684, SP:P20815, PID:181354, PID:181372, PID:181374, PID:219963, PID:35911, and PID:510086; identified by sequence similarity; winged helix family two component transcriptional regulator 1360935..1361612 Pseudomonas putida KT2440 1045864 NP_743347.1 CDS phoQ NC_002947.3 1361609 1362955 D similar to GP:9947105, and GP:9947105; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 1361609..1362955 Pseudomonas putida KT2440 1045799 NP_743348.1 CDS dctA NC_002947.3 1363306 1364628 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1363306..1364628 Pseudomonas putida KT2440 1045900 NP_743349.1 CDS PP_1189 NC_002947.3 1364777 1365475 R identified by match to TIGR protein family HMM TIGR00104; hypothetical protein complement(1364777..1365475) Pseudomonas putida KT2440 1045895 NP_743350.1 CDS PP_1190 NC_002947.3 1365476 1365937 R hypothetical protein complement(1365476..1365937) Pseudomonas putida KT2440 1045875 NP_743351.1 CDS PP_1191 NC_002947.3 1365987 1366697 R identified by match to PFAM protein family HMM PF01479; S4 domain-containing protein complement(1365987..1366697) Pseudomonas putida KT2440 1045873 NP_743352.1 CDS PP_1192 NC_002947.3 1366817 1367305 R similar to GP:9947377; identified by sequence similarity; acetyltransferase complement(1366817..1367305) Pseudomonas putida KT2440 1045893 NP_743353.1 CDS PP_1193 NC_002947.3 1367567 1368169 D hypothetical protein 1367567..1368169 Pseudomonas putida KT2440 1045880 NP_743354.1 CDS PP_1194 NC_002947.3 1368292 1369206 D hypothetical protein 1368292..1369206 Pseudomonas putida KT2440 1045874 NP_743355.1 CDS PP_1195 NC_002947.3 1369203 1370921 D hypothetical protein 1369203..1370921 Pseudomonas putida KT2440 1045940 NP_743356.1 CDS PP_1196 NC_002947.3 1370970 1371725 D hypothetical protein 1370970..1371725 Pseudomonas putida KT2440 1045896 NP_743357.1 CDS rimO NC_002947.3 1371797 1373209 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(1371797..1373209) Pseudomonas putida KT2440 1045888 NP_743358.1 CDS PP_1198 NC_002947.3 1373329 1373625 R similar to GB:J04144, GB:A00914, SP:P12821, SP:P22966, PID:14653, and PID:178286; identified by sequence similarity; Cro/CI family transcriptional regulator complement(1373329..1373625) Pseudomonas putida KT2440 1045886 NP_743359.1 CDS PP_1199 NC_002947.3 1373616 1373951 R hypothetical protein complement(1373616..1373951) Pseudomonas putida KT2440 1045937 NP_743360.1 CDS kup NC_002947.3 1374379 1376289 D similar to SP:P30016; identified by sequence similarity; Kup system potassium uptake protein 1374379..1376289 Pseudomonas putida KT2440 1045903 NP_743361.1 CDS PP_1201 NC_002947.3 1376338 1377630 R virulence factor family protein complement(1376338..1377630) Pseudomonas putida KT2440 1045891 NP_743362.1 CDS PP_1202 NC_002947.3 1377630 1380272 R identified by match to PFAM protein family HMM PF03706; hypothetical protein complement(1377630..1380272) Pseudomonas putida KT2440 1045883 NP_743363.1 CDS dinP NC_002947.3 1381248 1382312 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1381248..1382312 Pseudomonas putida KT2440 1045968 NP_743364.1 CDS PP_1204 NC_002947.3 1382339 1383298 R lipoprotein complement(1382339..1383298) Pseudomonas putida KT2440 1045931 NP_743365.1 CDS proS NC_002947.3 1383313 1385028 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1383313..1385028) Pseudomonas putida KT2440 1045921 NP_743366.1 CDS oprD NC_002947.3 1385189 1386454 R identified by match to PFAM protein family HMM PF03573; porin complement(1385189..1386454) Pseudomonas putida KT2440 1045899 NP_743367.1 CDS PP_1207 NC_002947.3 1387145 1387564 D similar to GP:15154966; identified by sequence similarity; histidine triad (HIT) protein 1387145..1387564 Pseudomonas putida KT2440 1045966 NP_743368.1 CDS PP_1208 NC_002947.3 1387566 1387772 D similar to GP:9946867; identified by sequence similarity; hypothetical protein 1387566..1387772 Pseudomonas putida KT2440 1045953 NP_743369.1 CDS PP_1209 NC_002947.3 1387894 1388169 R similar to GP:9946868; identified by sequence similarity; cold-shock domain-contain protein complement(1387894..1388169) Pseudomonas putida KT2440 1045911 NP_743370.1 CDS PP_1210 NC_002947.3 1388769 1389242 D identified by match to PFAM protein family HMM PF00210; DNA-binding stress protein 1388769..1389242 Pseudomonas putida KT2440 1045907 NP_743371.1 CDS PP_1211 NC_002947.3 1389444 1389782 D hypothetical protein 1389444..1389782 Pseudomonas putida KT2440 1046083 NP_743372.1 CDS PP_1212 NC_002947.3 1389877 1390098 D similar to GP:7799507; identified by sequence similarity; hypothetical protein 1389877..1390098 Pseudomonas putida KT2440 1045969 NP_743373.1 CDS aspS NC_002947.3 1390192 1391967 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1390192..1391967 Pseudomonas putida KT2440 1046075 NP_743374.1 CDS PP_1214 NC_002947.3 1392082 1392828 D identified by match to TIGR protein family HMM TIGR01033; hypothetical protein 1392082..1392828 Pseudomonas putida KT2440 1045957 NP_743375.1 CDS ruvC NC_002947.3 1393014 1393538 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1393014..1393538 Pseudomonas putida KT2440 1045934 NP_743376.1 CDS ruvA NC_002947.3 1393648 1394265 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1393648..1394265 Pseudomonas putida KT2440 1046077 NP_743377.1 CDS ruvB NC_002947.3 1394262 1395308 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1394262..1395308 Pseudomonas putida KT2440 1046067 NP_743378.1 CDS PP_1218 NC_002947.3 1395434 1395886 D similar to GP:5514775, and GP:5514775; identified by sequence similarity; hypothetical protein 1395434..1395886 Pseudomonas putida KT2440 1045952 NP_743379.1 CDS tolQ NC_002947.3 1395889 1396584 D similar to GP:5514776, and GP:5514776; identified by sequence similarity; biopolymer transport protein TolQ 1395889..1396584 Pseudomonas putida KT2440 1045963 NP_743380.1 CDS tolR NC_002947.3 1396599 1397051 D similar to GP:5514777, and GP:5514777; identified by sequence similarity; biopolymer transport protein TolR 1396599..1397051 Pseudomonas putida KT2440 1046088 NP_743381.1 CDS tolA NC_002947.3 1397051 1398169 D similar to GP:5514778, and GP:5514778; identified by sequence similarity; biopolymer transport protein TolA 1397051..1398169 Pseudomonas putida KT2440 1046126 NP_743382.1 CDS tolB NC_002947.3 1398166 1399467 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1398166..1399467 Pseudomonas putida KT2440 1046064 NP_743383.1 CDS oprL NC_002947.3 1399522 1400022 D similar to GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, and PID:553291; identified by sequence similarity; peptidoglycan-associated lipoprotein OprL 1399522..1400022 Pseudomonas putida KT2440 1046136 NP_743384.1 CDS PP_1224 NC_002947.3 1400029 1400835 D similar to GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, PID:553291, GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, and PID:553291; identified by sequence similarity; hypothetical protein 1400029..1400835 Pseudomonas putida KT2440 1046140 NP_743385.1 CDS PP_1225 NC_002947.3 1401004 1401651 D similar to GP:5514780; identified by sequence similarity; radical SAM domain-containing protein 1401004..1401651 Pseudomonas putida KT2440 1041963 NP_743386.1 CDS exsB NC_002947.3 1401669 1402343 D similar to GP:5514781; identified by sequence similarity; exoenzyme S synthesis protein B 1401669..1402343 Pseudomonas putida KT2440 1046076 NP_743387.1 CDS PP_1227 NC_002947.3 1402573 1403532 R identified by match to PFAM protein family HMM PF01545; cation efflux protein complement(1402573..1403532) Pseudomonas putida KT2440 1046141 NP_743388.1 CDS PP_1228 NC_002947.3 1403613 1405679 R identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer complement(1403613..1405679) Pseudomonas putida KT2440 1046149 NP_743389.1 CDS PP_1229 NC_002947.3 1405746 1407098 R identified by match to PFAM protein family HMM PF00324; amino acid ABC transporter permease complement(1405746..1407098) Pseudomonas putida KT2440 1046093 NP_743390.1 CDS PP_1230 NC_002947.3 1407546 1409054 D similar to GB:Z14982, GB:X62598, GB:X66401, GB:U17496, GB:U17497, GB:U32863, SP:P28062, PID:1045469, PID:1045471, PID:1054747, PID:38482, PID:596140, PID:596142, GB:Z14982, GB:X62598, GB:X66401, GB:U17496, GB:U17497, GB:U32863, SP:P28062, PID:1045469, PID:1045471, PID:1054747, PID:38482, PID:596140, and PID:596142; identified by sequence similarity; hypothetical protein 1407546..1409054 Pseudomonas putida KT2440 1046153 NP_743391.1 CDS nadA NC_002947.3 1409329 1410387 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1409329..1410387 Pseudomonas putida KT2440 1046143 NP_743392.1 CDS PP_1232 NC_002947.3 1410496 1411932 R identified by match to PFAM protein family HMM PF01435; hypothetical protein complement(1410496..1411932) Pseudomonas putida KT2440 1046119 NP_743393.1 CDS PP_1233 NC_002947.3 1412055 1412294 D similar to GP:9946916; identified by sequence similarity; SirA family protein 1412055..1412294 Pseudomonas putida KT2440 1046133 NP_743394.1 CDS PP_1234 NC_002947.3 1412315 1413385 D similar to SP:P10131, and PID:44218; identified by sequence similarity; hypothetical protein 1412315..1413385 Pseudomonas putida KT2440 1042447 NP_743395.1 CDS PP_1235 NC_002947.3 1413421 1413894 R identified by match to PFAM protein family HMM PF00578; alkyl hydroperoxide reductase complement(1413421..1413894) Pseudomonas putida KT2440 1042439 NP_743396.1 CDS PP_1236 NC_002947.3 1413906 1414466 R similar to SP:P23483; identified by sequence similarity; glycine cleavage system transcriptional repressor complement(1413906..1414466) Pseudomonas putida KT2440 1042085 NP_743397.1 CDS dapA NC_002947.3 1414726 1415613 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1414726..1415613 Pseudomonas putida KT2440 1046257 NP_743398.1 CDS PP_1238 NC_002947.3 1415629 1416750 D similar to GP:9946921; identified by sequence similarity; lipoprotein 1415629..1416750 Pseudomonas putida KT2440 1041980 NP_743399.1 CDS PP_1239 NC_002947.3 1416751 1417509 D similar to GP:9946922; identified by sequence similarity; beta-lactamase domain-containing protein 1416751..1417509 Pseudomonas putida KT2440 1046147 NP_743400.1 CDS purC NC_002947.3 1417540 1418250 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1417540..1418250 Pseudomonas putida KT2440 1042268 NP_743401.1 CDS PP_1241 NC_002947.3 1418530 1418880 R similar to GP:9108007; identified by sequence similarity; hypothetical protein complement(1418530..1418880) Pseudomonas putida KT2440 1046260 NP_743402.1 CDS PP_1242 NC_002947.3 1419237 1419371 R hypothetical protein complement(1419237..1419371) Pseudomonas putida KT2440 1046152 NP_743403.1 CDS PP_1243 NC_002947.3 1419478 1419648 D hypothetical protein 1419478..1419648 Pseudomonas putida KT2440 1042089 NP_743404.1 CDS PP_1244 NC_002947.3 1419645 1420010 R hypothetical protein complement(1419645..1420010) Pseudomonas putida KT2440 1042455 NP_743405.1 CDS PP_1245 NC_002947.3 1420519 1421409 D hypothetical protein 1420519..1421409 Pseudomonas putida KT2440 1042456 NP_743406.1 CDS PP_1246 NC_002947.3 1421418 1423277 D similar to GP:10179993; identified by sequence similarity; hypothetical protein 1421418..1423277 Pseudomonas putida KT2440 1042449 NP_743407.1 CDS PP_1247 NC_002947.3 1423207 1424670 R hypothetical protein complement(1423207..1424670) Pseudomonas putida KT2440 1041735 NP_743408.1 CDS PP_1248 NC_002947.3 1424597 1425364 R similar to SP:P37639, PID:466653, GB:U00096, and PID:1789933; identified by sequence similarity; amino acid transporter LysE complement(1424597..1425364) Pseudomonas putida KT2440 1041928 NP_743409.1 CDS PP_1249 NC_002947.3 1425405 1425596 D similar to GB:Y00486, GB:M16446, SP:P07741, PID:178867, and PID:28819; identified by sequence similarity; hypothetical protein 1425405..1425596 Pseudomonas putida KT2440 1042438 NP_743410.1 CDS PP_1250 NC_002947.3 1426101 1427522 D similar to GP:4323583, GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 1426101..1427522 Pseudomonas putida KT2440 1042464 NP_743411.2 CDS mqo-2 NC_002947.3 1427844 1429481 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1427844..1429481 Pseudomonas putida KT2440 1042466 NP_743412.1 CDS PP_1252 NC_002947.3 1429961 1431382 D similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 1429961..1431382 Pseudomonas putida KT2440 1042461 NP_743413.1 CDS PP_1253 NC_002947.3 1431534 1431869 R similar to GB:L20868, GB:D23660, GB:T11045, GB:X73974, SP:P36578, PID:432359, and PID:560476; identified by sequence similarity; ArsR family transcriptional regulator complement(1431534..1431869) Pseudomonas putida KT2440 1042452 NP_743414.1 CDS xenA NC_002947.3 1431919 1433010 D similar to GP:6049281, and GP:6049281; identified by sequence similarity; xenobiotic reductase A 1431919..1433010 Pseudomonas putida KT2440 1042453 NP_743415.1 CDS PP_1255 NC_002947.3 1433134 1434381 R identified by match to TIGR protein family HMM TIGR00136; FAD dependent oxidoreductase complement(1433134..1434381) Pseudomonas putida KT2440 1042470 NP_743416.1 CDS PP_1256 NC_002947.3 1434384 1435961 R identified by match to TIGR protein family HMM TIGR01722; ketoglutarate semialdehyde dehydrogenase complement(1434384..1435961) Pseudomonas putida KT2440 1042468 NP_743417.1 CDS PP_1257 NC_002947.3 1436114 1437061 R similar to GB:X13543, and GB:X13541; identified by sequence similarity; dihydrodipicolinate synthase complement(1436114..1437061) Pseudomonas putida KT2440 1042610 NP_743418.1 CDS PP_1258 NC_002947.3 1437104 1438030 R identified by match to PFAM protein family HMM PF02567; proline racemase complement(1437104..1438030) Pseudomonas putida KT2440 1041664 NP_743419.1 CDS PP_1259 NC_002947.3 1438054 1439667 R identified by match to PFAM protein family HMM PF03600; amino acid ABC transporter permease complement(1438054..1439667) Pseudomonas putida KT2440 1045792 NP_743420.1 CDS PP_1260 NC_002947.3 1440326 1441654 D similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 1440326..1441654 Pseudomonas putida KT2440 1042302 NP_743421.1 CDS PP_1261 NC_002947.3 1442086 1443060 R Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase complement(1442086..1443060) Pseudomonas putida KT2440 1042480 NP_743422.1 CDS PP_1262 NC_002947.3 1443236 1444183 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(1443236..1444183) Pseudomonas putida KT2440 1042458 NP_743423.1 CDS PP_1263 NC_002947.3 1444375 1445904 D similar to GB:X12556, SP:P10911, PID:30482, and PID:825688; identified by sequence similarity; NodT family RND efflux system outer membrane lipoprotein 1444375..1445904 Pseudomonas putida KT2440 1042098 NP_743424.1 CDS PP_1264 NC_002947.3 1445901 1448078 D similar to GB:L03558, GB:U46692, SP:P04080, PID:1235678, PID:291927, and GB:L13434; identified by sequence similarity; fusaric acid resistance protein 1445901..1448078 Pseudomonas putida KT2440 1042509 NP_743425.1 CDS PP_1265 NC_002947.3 1448068 1448268 D similar to GB:M23114, GB:M23116, GB:M23278, GB:M23115, SP:P16614, SP:P16615, PID:306850, PID:306851, and PID:567108; identified by sequence similarity; hypothetical protein 1448068..1448268 Pseudomonas putida KT2440 1041861 NP_743426.1 CDS PP_1266 NC_002947.3 1448279 1449139 D similar to GB:L08239, and PID:950412; identified by sequence similarity; secretion protein HlyD family protein 1448279..1449139 Pseudomonas putida KT2440 1041860 NP_743427.1 CDS PP_1267 NC_002947.3 1449212 1449679 R hypothetical protein complement(1449212..1449679) Pseudomonas putida KT2440 1042635 NP_743428.1 CDS PP_1268 NC_002947.3 1449676 1450065 R SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; regulator PrlF complement(1449676..1450065) Pseudomonas putida KT2440 1042484 NP_743429.1 CDS PP_1269 NC_002947.3 1450095 1450541 R identified by match to PFAM protein family HMM PF00582; universal stress protein complement(1450095..1450541) Pseudomonas putida KT2440 1042477 NP_743430.1 CDS PP_1270 NC_002947.3 1450815 1451720 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1450815..1451720 Pseudomonas putida KT2440 1042090 NP_743431.1 CDS PP_1271 NC_002947.3 1451837 1453378 D similar to GP:7677418; identified by sequence similarity; major facilitator superfamily transporter 1451837..1453378 Pseudomonas putida KT2440 1041634 NP_743432.1 CDS PP_1272 NC_002947.3 1453365 1454468 D similar to GP:7677417; identified by sequence similarity; secretion protein HlyD family protein 1453365..1454468 Pseudomonas putida KT2440 1042500 NP_743433.1 CDS PP_1273 NC_002947.3 1454465 1455919 D identified by match to PFAM protein family HMM PF02321; NodT family RND efflux system outer membrane lipoprotein 1454465..1455919 Pseudomonas putida KT2440 1044323 NP_743434.1 CDS PP_1274 NC_002947.3 1456168 1456980 R identified by match to PFAM protein family HMM PF02254; short chain dehydrogenase complement(1456168..1456980) Pseudomonas putida KT2440 1042248 NP_743435.1 CDS PP_1275 NC_002947.3 1457012 1457476 R similar to GP:9950061; identified by sequence similarity; hypothetical protein complement(1457012..1457476) Pseudomonas putida KT2440 1042491 NP_743436.1 CDS PP_1276 NC_002947.3 1457640 1458098 D hypothetical protein 1457640..1458098 Pseudomonas putida KT2440 1043903 NP_743437.1 CDS algA NC_002947.3 1458138 1459595 R identified by match to PFAM protein family HMM PF00483; mannose-1-phosphate guanylyltransferase complement(1458138..1459595) Pseudomonas putida KT2440 1043792 NP_743438.1 CDS algF NC_002947.3 1459628 1460275 R similar to GB:M26665, GB:M18372, GB:L05514, SP:P15515, SP:P15516, PID:179466, PID:184058, PID:292146, GB:M26665, GB:M18372, GB:L05514, SP:P15515, SP:P15516, PID:179466, PID:184058, and PID:292146; identified by sequence similarity; alginate O-acetyltransferase complement(1459628..1460275) Pseudomonas putida KT2440 1042317 NP_743439.1 CDS algJ NC_002947.3 1460296 1461462 R similar to GP:2920569, GB:U08277, GB:U08276, GB:U25638, GB:M63506, GB:U58978, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13760, PID:1373011, PID:2231538, PID:386938, PID:490048, PID:533431, PID:533433, PID:533464, PID:540444, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553578, PID:553580, PID:553583, PID:553585, PID:602463, PID:602465, PID:688440, PID:703086, PID:825607, PID:841154, PID:841156, PID:847881, PID:847947, PID:860984, PID:862604, PID:902552, PID:929629, PID:929993, PID:971165, and PID:987615; identified by sequence similarity; alginate O-acetylation protein AlgJ complement(1460296..1461462) Pseudomonas putida KT2440 1042496 NP_743440.1 CDS algI NC_002947.3 1461465 1462922 R similar to GB:U08277, GB:U08276, GB:U25638, GB:M63506, GB:U58978, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13760, PID:1373011, PID:2231538, PID:386938, PID:490048, PID:533431, PID:533433, PID:533464, PID:540444, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553578, PID:553580, PID:553583, PID:553585, PID:602463, PID:602465, PID:688440, PID:703086, PID:825607, PID:841154, PID:841156, PID:847881, PID:847947, PID:860984, PID:862604, PID:902552, PID:929629, PID:929993, PID:971165, PID:987615, GB:U08277, GB:U08276, GB:U25638, GB:M63506, GB:U58978, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13760, PID:1373011, PID:2231538, PID:386938, PID:490048, PID:533431, PID:533433, PID:533464, PID:540444, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553578, PID:553580, PID:553583, PID:553585, PID:602463, PID:602465, PID:688440, PID:703086, PID:825607, PID:841154, PID:841156, PID:847881, PID:847947, PID:860984, PID:862604, PID:902552, PID:929629, PID:92; alginate o-acetyltransferase AlgI complement(1461465..1462922) Pseudomonas putida KT2440 1042485 NP_743441.1 CDS algL NC_002947.3 1463064 1464179 R Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase complement(1463064..1464179) Pseudomonas putida KT2440 1041918 NP_743442.1 CDS algX NC_002947.3 1464176 1465615 R similar to GP:2920566; identified by sequence similarity; alginate biosynthesis protein AlgX complement(1464176..1465615) Pseudomonas putida KT2440 1042603 NP_743443.1 CDS PP_1283 NC_002947.3 1465629 1467302 R similar to GB:M30515, GB:M63599, GB:M20009, GB:X17290, GB:X17288, GB:X17369, GB:X17289, GB:M13577, GB:M30047, GB:M30516, GB:L18865, GB:L18866, GB:X17286, GB:X17287, SP:P02686, PID:187403, PID:307161, GB:M30515, GB:M63599, GB:M20009, GB:X17290, GB:X17288, GB:X17369, GB:X17289, GB:M13577, GB:M30047, GB:M30516, GB:L18865, GB:L18866, GB:X17286, GB:X17287, SP:P02686, PID:187403, and PID:307161; identified by sequence similarity; carbohydrate-binding and sugar hydrolysis protein complement(1465629..1467302) Pseudomonas putida KT2440 1041703 NP_743444.1 CDS algE NC_002947.3 1467211 1468689 R outer membrane protein AlgE complement(1467211..1468689) Pseudomonas putida KT2440 1041715 NP_743445.1 CDS algK NC_002947.3 1468686 1470140 R similar to GB:U00016, PID:466971, GB:U00016, and PID:466971; identified by sequence similarity; Sel1 domain-containing protein repeat-containing protein complement(1468686..1470140) Pseudomonas putida KT2440 1043198 NP_743446.1 CDS PP_1286 NC_002947.3 1470130 1471296 R similar to GB:X06144, SP:P20921, and PID:45919; identified by sequence similarity; type IV pilus assembly PilZ complement(1470130..1471296) Pseudomonas putida KT2440 1044531 NP_743447.1 CDS PP_1287 NC_002947.3 1471334 1472824 R alginate biosynthesis protein Alg8 complement(1471334..1472824) Pseudomonas putida KT2440 1041865 NP_743448.1 CDS algD NC_002947.3 1472902 1474218 R similar to GB:U00020, PID:467113, GB:U00020, and PID:467113; identified by sequence similarity; GDP-mannose 6-dehydrogenase complement(1472902..1474218) Pseudomonas putida KT2440 1041882 NP_743449.1 CDS PP_1289 NC_002947.3 1475019 1475798 R identified by match to PFAM protein family HMM PF03883; hypothetical protein complement(1475019..1475798) Pseudomonas putida KT2440 1043300 NP_743450.1 CDS PP_1290 NC_002947.3 1475819 1477063 D identified by match to PFAM protein family HMM PF01522; polysaccharide deacetylase 1475819..1477063 Pseudomonas putida KT2440 1041748 NP_743451.1 CDS PP_1291 NC_002947.3 1477345 1478739 D identified by match to PFAM protein family HMM PF02562; PhoH family protein 1477345..1478739 Pseudomonas putida KT2440 1043881 NP_743452.1 CDS moaC NC_002947.3 1478935 1479405 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1478935..1479405 Pseudomonas putida KT2440 1041756 NP_743453.1 CDS moaD NC_002947.3 1479402 1479650 D similar to GB:J02971, GB:J03478, GB:X12706, GB:X04688, GB:X12705, SP:P05113, PID:288310, PID:29393, PID:33836, PID:386822, and PID:386823; identified by sequence similarity; molybdopterin converting factor subunit 1 1479402..1479650 Pseudomonas putida KT2440 1043756 NP_743454.1 CDS moaE NC_002947.3 1479653 1480099 D similar to SP:P30749; identified by sequence similarity; molybdopterin biosynthesis protein MoaE 1479653..1480099 Pseudomonas putida KT2440 1041666 NP_743455.2 CDS rhlB NC_002947.3 1480293 1481735 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(1480293..1481735) Pseudomonas putida KT2440 1044132 NP_743456.1 CDS estB NC_002947.3 1481836 1482492 R similar to GB:M55406, SP:Q02505, PID:553594, GB:M55406, SP:Q02505, and PID:553594; identified by sequence similarity; carboxylesterase complement(1481836..1482492) Pseudomonas putida KT2440 1043413 NP_743457.1 CDS aapJ NC_002947.3 1482825 1483853 D similar to GB:X17025, and PID:488750; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 1482825..1483853 Pseudomonas putida KT2440 1041863 NP_743458.1 CDS aapQ NC_002947.3 1483921 1485099 D identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter permease 1483921..1485099 Pseudomonas putida KT2440 1041680 NP_743459.1 CDS aapM NC_002947.3 1485110 1486207 D similar to GP:2961078; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 1485110..1486207 Pseudomonas putida KT2440 1044174 NP_743460.1 CDS aapP NC_002947.3 1486218 1486982 D identified by match to TIGR protein family HMM TIGR00968; general amino acid ABC transporter ATP-binding protein 1486218..1486982 Pseudomonas putida KT2440 1042512 NP_743461.1 CDS algW NC_002947.3 1487112 1488320 R identified by match to PFAM protein family HMM PF00595; 2-alkenal reductase complement(1487112..1488320) Pseudomonas putida KT2440 1044377 NP_743462.1 CDS PP_1302 NC_002947.3 1488441 1489199 D identified by match to PFAM protein family HMM PF01784; hypothetical protein 1488441..1489199 Pseudomonas putida KT2440 1043970 NP_743463.1 CDS cysD NC_002947.3 1489402 1490319 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1489402..1490319 Pseudomonas putida KT2440 1041607 NP_743464.1 CDS cysNC NC_002947.3 1490336 1492237 D in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 1490336..1492237 Pseudomonas putida KT2440 1046125 NP_743465.1 CDS PP_1305 NC_002947.3 1492332 1492595 R similar to GP:1942132; identified by sequence similarity; Pyocin S-type immunity protein complement(1492332..1492595) Pseudomonas putida KT2440 1041707 NP_743466.1 CDS PP_1306 NC_002947.3 1492592 1494868 R similar to SP:Q06583, GB:M31013, GB:D11393, SP:P35579, PID:1679804, PID:189036, and PID:553596; identified by sequence similarity; pyocin S-type Killer domain-containing protein complement(1492592..1494868) Pseudomonas putida KT2440 1043967 NP_743467.1 CDS PP_1307 NC_002947.3 1494963 1495442 R similar to GB:M74578, PID:452832, and PID:455428; identified by sequence similarity; AsnC family transcriptional regulator complement(1494963..1495442) Pseudomonas putida KT2440 1041672 NP_743468.1 CDS mdeA NC_002947.3 1495570 1496766 D catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 1495570..1496766 Pseudomonas putida KT2440 1041604 NP_743469.1 CDS PP_1309 NC_002947.3 1496838 1497275 R similar to GP:9950675; identified by sequence similarity; hypothetical protein complement(1496838..1497275) Pseudomonas putida KT2440 1042974 NP_743470.1 CDS PP_1310 NC_002947.3 1497411 1498046 D similar to GP:9950674; identified by sequence similarity; hypothetical protein 1497411..1498046 Pseudomonas putida KT2440 1042638 NP_743471.1 CDS PP_1311 NC_002947.3 1498072 1499421 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1498072..1499421 Pseudomonas putida KT2440 1041624 NP_743472.1 CDS PP_1312 NC_002947.3 1499583 1500677 D identified by match to PFAM protein family HMM PF03969; AFG1 family ATPase 1499583..1500677 Pseudomonas putida KT2440 1041626 NP_743473.1 CDS PP_1313 NC_002947.3 1500784 1501704 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(1500784..1501704) Pseudomonas putida KT2440 1044527 NP_743474.1 CDS PP_1314 NC_002947.3 1501895 1502935 R identified by match to TIGR protein family HMM TIGR01293; aldo/keto reductase complement(1501895..1502935) Pseudomonas putida KT2440 1041603 NP_743475.1 CDS rplM NC_002947.3 1503194 1503622 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1503194..1503622 Pseudomonas putida KT2440 1043891 NP_743476.1 CDS rpsI NC_002947.3 1503637 1504029 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1503637..1504029 Pseudomonas putida KT2440 1041596 NP_743477.1 CDS petA NC_002947.3 1504292 1504885 D identified by match to PFAM protein family HMM PF00355; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1504292..1504885 Pseudomonas putida KT2440 1044363 NP_743478.1 CDS petB NC_002947.3 1504885 1506096 D similar to GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; ubiquinol--cytochrome c reductase, cytochrome b 1504885..1506096 Pseudomonas putida KT2440 1041759 NP_743479.1 CDS petC NC_002947.3 1506096 1506875 D similar to GP:9950662; identified by sequence similarity; ubiquinol--cytochrome c reductase, cytochrome c1 1506096..1506875 Pseudomonas putida KT2440 1041644 NP_743480.1 CDS sspA NC_002947.3 1506992 1507615 D similar to GP:9864180; identified by sequence similarity; stringent starvation protein A 1506992..1507615 Pseudomonas putida KT2440 1043611 NP_743481.1 CDS sspB NC_002947.3 1507596 1508057 D similar to GB:S50157, GB:X60221, SP:P24539, and PID:509291; identified by sequence similarity; ClpXP protease specificity-enhancing factor 1507596..1508057 Pseudomonas putida KT2440 1041601 NP_743482.1 CDS PP_1322 NC_002947.3 1508119 1508697 R transport-associated protein complement(1508119..1508697) Pseudomonas putida KT2440 1042517 NP_743483.1 CDS gmhA NC_002947.3 1508694 1509281 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(1508694..1509281) Pseudomonas putida KT2440 1042979 NP_743484.1 CDS PP_1324 NC_002947.3 1509374 1509748 R identified by match to TIGR protein family HMM TIGR00252; hypothetical protein complement(1509374..1509748) Pseudomonas putida KT2440 1041908 NP_743485.1 CDS PP_1325 NC_002947.3 1509745 1511562 R LppC family lipoprotein complement(1509745..1511562) Pseudomonas putida KT2440 1041718 NP_743486.1 CDS PP_1326 NC_002947.3 1511740 1512624 D identified by match to PFAM protein family HMM PF00590; uroporphyrin-III C/tetrapyrrole methyltransferase 1511740..1512624 Pseudomonas putida KT2440 1041645 NP_743487.1 CDS PP_1328 NC_002947.3 1513358 1513831 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1513358..1513831 Pseudomonas putida KT2440 1041659 NP_743488.1 CDS mraW NC_002947.3 1513828 1514775 D similar to GP:9950652; identified by sequence similarity; S-adenosyl-methyltransferase MraW 1513828..1514775 Pseudomonas putida KT2440 1043466 NP_743489.1 CDS ftsL NC_002947.3 1514772 1515065 D similar to GB:M11186, GB:M62611, SP:P01178, PID:189411, PID:386991, and PID:825699; identified by sequence similarity; cell division protein FtsL 1514772..1515065 Pseudomonas putida KT2440 1044037 NP_743490.1 CDS ftsI NC_002947.3 1515062 1516810 D similar to GB:X65873, SP:P33176, PID:34083, GB:X74764, SP:Q16832, and PID:433338; identified by sequence similarity; peptidoglycan glycosyltransferase 1515062..1516810 Pseudomonas putida KT2440 1042450 NP_743491.1 CDS murE NC_002947.3 1516807 1518297 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1516807..1518297 Pseudomonas putida KT2440 1041725 NP_743492.1 CDS murF NC_002947.3 1518290 1519657 D similar to GB:X64229, SP:P35659, and PID:30503; identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1518290..1519657 Pseudomonas putida KT2440 1043795 NP_743493.1 CDS mraY NC_002947.3 1519657 1520739 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1519657..1520739 Pseudomonas putida KT2440 1042729 NP_743494.1 CDS murD NC_002947.3 1520740 1522092 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1520740..1522092 Pseudomonas putida KT2440 1041728 NP_743495.1 CDS ftsW NC_002947.3 1522089 1523303 D identified by match to PFAM protein family HMM PF01098; cell division protein FtsW 1522089..1523303 Pseudomonas putida KT2440 1041667 NP_743496.1 CDS murG NC_002947.3 1523293 1524372 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1523293..1524372 Pseudomonas putida KT2440 1044364 NP_743497.1 CDS murC NC_002947.3 1524365 1525813 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1524365..1525813 Pseudomonas putida KT2440 1041656 NP_743498.1 CDS ddl NC_002947.3 1525810 1526766 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1525810..1526766 Pseudomonas putida KT2440 1044021 NP_743499.1 CDS ftsQ NC_002947.3 1526772 1527641 D identified by match to PFAM protein family HMM PF03799; cell division protein FtsQ 1526772..1527641 Pseudomonas putida KT2440 1041867 NP_743500.1 CDS ftsA NC_002947.3 1527587 1528918 D similar to GP:2707899; identified by sequence similarity; cell division protein FtsA 1527587..1528918 Pseudomonas putida KT2440 1043828 NP_743501.1 CDS ftsZ NC_002947.3 1528974 1530170 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1528974..1530170 Pseudomonas putida KT2440 1042519 NP_743502.1 CDS lpxC NC_002947.3 1530283 1531194 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1530283..1531194 Pseudomonas putida KT2440 1042966 NP_743503.1 CDS PP_1344 NC_002947.3 1531242 1531871 R similar to GP:9950637; identified by sequence similarity; hypothetical protein complement(1531242..1531871) Pseudomonas putida KT2440 1041731 NP_743504.2 CDS secA NC_002947.3 1532070 1534805 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1532070..1534805 Pseudomonas putida KT2440 1041726 NP_743505.1 CDS argJ NC_002947.3 1534988 1536205 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1534988..1536205 Pseudomonas putida KT2440 1046524 NP_743506.1 CDS PP_1347 NC_002947.3 1536361 1536993 D similar to GP:15076291; identified by sequence similarity; glutathione S-transferase 1536361..1536993 Pseudomonas putida KT2440 1041795 NP_743507.1 CDS PP_1348 NC_002947.3 1536990 1537934 D similar to GP:9950631; identified by sequence similarity; hypothetical protein 1536990..1537934 Pseudomonas putida KT2440 1047011 NP_743508.1 CDS PP_1349 NC_002947.3 1537967 1538533 R identified by match to TIGR protein family HMM TIGR00636; ATP--cobalamin adenosyltransferase complement(1537967..1538533) Pseudomonas putida KT2440 1041778 NP_743509.1 CDS PP_1350 NC_002947.3 1538535 1540565 R identified by match to PFAM protein family HMM PF02518; multi-sensor signal transduction histidine kinase complement(1538535..1540565) Pseudomonas putida KT2440 1041727 NP_743510.1 CDS PP_1351 NC_002947.3 1540603 1541520 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(1540603..1541520) Pseudomonas putida KT2440 1043947 NP_743511.1 CDS PP_1352 NC_002947.3 1541621 1542106 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1541621..1542106 Pseudomonas putida KT2440 1041828 NP_743512.1 CDS PP_1353 NC_002947.3 1542217 1543065 D identified by match to PFAM protein family HMM PF00924; mechanosensitive ion channel protein MscS 1542217..1543065 Pseudomonas putida KT2440 1041741 NP_743513.1 CDS PP_1354 NC_002947.3 1543193 1544437 D similar to GP:1619595; identified by sequence similarity; major facilitator superfamily transporter 1543193..1544437 Pseudomonas putida KT2440 1041948 NP_743514.1 CDS ampG NC_002947.3 1544551 1546098 R similar to SP:P25149, GB:X52480, PID:580865, PID:580945, and GB:AL009126; identified by sequence similarity; AmpG-related permease complement(1544551..1546098) Pseudomonas putida KT2440 1041730 NP_743515.1 CDS PP_1356 NC_002947.3 1546142 1546495 R identified by match to TIGR protein family HMM TIGR00589; hypothetical protein complement(1546142..1546495) Pseudomonas putida KT2440 1043937 NP_743516.1 CDS PP_1357 NC_002947.3 1546543 1547670 D similar to GP:9950620, and GP:9950620; identified by sequence similarity; hypothetical protein 1546543..1547670 Pseudomonas putida KT2440 1042533 NP_743517.1 CDS PP_1358 NC_002947.3 1547615 1548484 D similar to GP:9950618; identified by sequence similarity; hypothetical protein 1547615..1548484 Pseudomonas putida KT2440 1041772 NP_743518.1 CDS fxsA NC_002947.3 1548550 1549011 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 1548550..1549011 Pseudomonas putida KT2440 1041761 NP_743519.1 CDS groES NC_002947.3 1549256 1549549 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1549256..1549549 Pseudomonas putida KT2440 1044005 NP_743520.1 CDS groEL NC_002947.3 1549597 1551237 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1549597..1551237 Pseudomonas putida KT2440 1042522 NP_743521.1 CDS pykA NC_002947.3 1551363 1552817 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1551363..1552817) Pseudomonas putida KT2440 1044034 NP_743522.1 CDS PP_1363 NC_002947.3 1552956 1553384 D hypothetical protein 1552956..1553384 Pseudomonas putida KT2440 1042079 NP_743523.1 CDS PP_1364 NC_002947.3 1553394 1553867 D similar to GP:9950548; identified by sequence similarity; type IV pilus assembly PilZ 1553394..1553867 Pseudomonas putida KT2440 1041754 NP_743524.1 CDS sbcB NC_002947.3 1553925 1555358 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1553925..1555358 Pseudomonas putida KT2440 1044122 NP_743525.1 CDS PP_1366 NC_002947.3 1555432 1555809 R similar to GP:9950539, GB:Z31695, and PID:469144; identified by sequence similarity; transcriptional regulator MvaT, P16 subunit complement(1555432..1555809) Pseudomonas putida KT2440 1041869 NP_743526.1 CDS purU NC_002947.3 1556093 1556944 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1556093..1556944 Pseudomonas putida KT2440 1041724 NP_743527.1 CDS PP_1368 NC_002947.3 1557176 1558168 R identified by match to PFAM protein family HMM PF03706; hypothetical protein complement(1557176..1558168) Pseudomonas putida KT2440 1041868 NP_743528.1 CDS PP_1369 NC_002947.3 1558165 1558896 R similar to GP:9950535, and GP:9950535; identified by sequence similarity; hypothetical protein complement(1558165..1558896) Pseudomonas putida KT2440 1043928 NP_743529.1 CDS PP_1370 NC_002947.3 1558922 1560043 R identified by match to PFAM protein family HMM PF00534; glycoside hydrolase family protein complement(1558922..1560043) Pseudomonas putida KT2440 1043900 NP_743530.1 CDS PP_1371 NC_002947.3 1560212 1562086 R similar to GB:M90644, SP:P32001, PID:144139, GB:M90644, SP:P32001, and PID:144139; identified by sequence similarity; methyl-accepting chemotaxis transducer complement(1560212..1562086) Pseudomonas putida KT2440 1042534 NP_743531.1 CDS PP_1372 NC_002947.3 1562255 1563730 D identified by match to TIGR protein family HMM TIGR01428; hypothetical protein 1562255..1563730 Pseudomonas putida KT2440 1041953 NP_743532.1 CDS PP_1373 NC_002947.3 1563852 1565324 R identified by match to PFAM protein family HMM PF01384; phosphate transporter complement(1563852..1565324) Pseudomonas putida KT2440 1041750 NP_743533.1 CDS PP_1374 NC_002947.3 1565637 1565837 R similar to GP:9950512; identified by sequence similarity; hypothetical protein complement(1565637..1565837) Pseudomonas putida KT2440 1043943 NP_743534.1 CDS pcaR NC_002947.3 1566317 1567192 D similar to GB:X15341, SP:P12074, PID:30153, GB:X15341, SP:P12074, and PID:30153; identified by sequence similarity; pca regulon regulatory protein 1566317..1567192 Pseudomonas putida KT2440 1043894 NP_743535.1 CDS pcaK NC_002947.3 1567513 1568859 D similar to SP:Q51955, and SP:Q51955; identified by sequence similarity; benzoate transport 1567513..1568859 Pseudomonas putida KT2440 1043926 NP_743536.1 CDS pcaF NC_002947.3 1569186 1570388 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 1569186..1570388 Pseudomonas putida KT2440 1041755 NP_743537.1 CDS pcaT NC_002947.3 1570576 1571865 D similar to GP:5091487, GB:U08275, GB:M74032, SP:P01911, SP:P01912, SP:P04229, SP:P13758, SP:P13759, SP:P13760, PID:1143290, PID:483934, PID:490048, PID:533429, PID:540448, PID:540450, PID:553341, PID:553342, PID:553345, PID:553577, PID:553580, PID:553581, PID:553583, PID:602463, PID:639905, PID:688440, PID:695363, PID:695364, PID:703086, PID:825462, PID:825607, PID:841152, PID:841154, PID:847881, PID:860984, PID:862604, PID:902552, PID:929629, PID:971165, PID:984933, PID:987658, and PID:995769; identified by sequence similarity; metabolite/H+ symportermajor facilitator superfamily metabolite/H+ symporter 1570576..1571865 Pseudomonas putida KT2440 1043906 NP_743538.1 CDS pcaB NC_002947.3 1571875 1573227 D Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 1571875..1573227 Pseudomonas putida KT2440 1043939 NP_743539.1 CDS pcaD NC_002947.3 1573239 1574030 D similar to GP:5091485, and GP:2935027; identified by sequence similarity; 3-oxoadipate enol-lactonase 1573239..1574030 Pseudomonas putida KT2440 1042540 NP_743540.1 CDS pcaC NC_002947.3 1574041 1574433 D similar to GP:5091484, and GP:5091484; identified by sequence similarity; 4-carboxymuconolactone decarboxylase 1574041..1574433 Pseudomonas putida KT2440 1043902 NP_743541.1 CDS PP_1382 NC_002947.3 1574486 1575010 R similar to GP:5091483, and GP:5091483; identified by sequence similarity; hypothetical protein complement(1574486..1575010) Pseudomonas putida KT2440 1041960 NP_743542.1 CDS PP_1383 NC_002947.3 1575220 1576476 R similar to GP:5091482, and GP:5091482; identified by sequence similarity; BenF-like porin complement(1575220..1576476) Pseudomonas putida KT2440 1043913 NP_743543.1 CDS ttgC NC_002947.3 1576789 1578243 R similar to GP:5091481, and GP:5091481; identified by sequence similarity; NodT family RND efflux system outer membrane lipoprotein complement(1576789..1578243) Pseudomonas putida KT2440 1041923 NP_743544.1 CDS ttgB NC_002947.3 1578240 1581392 R similar to GP:3319233, and GP:3319233; identified by sequence similarity; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(1578240..1581392) Pseudomonas putida KT2440 1041744 NP_743545.1 CDS ttgA NC_002947.3 1581396 1582550 R similar to GP:5091480, and GP:5091480; identified by sequence similarity; RND family efflux transporter MFP subunit complement(1581396..1582550) Pseudomonas putida KT2440 1041938 NP_743546.1 CDS ttgR NC_002947.3 1582808 1583440 D similar to GP:8163734, and GP:13183097; identified by sequence similarity; TetR family transcriptional regulator 1582808..1583440 Pseudomonas putida KT2440 1042410 NP_743547.1 CDS PP_1388 NC_002947.3 1583558 1585009 R similar to GP:6002943; identified by sequence similarity; EmrB/QacA family drug resistance transporter complement(1583558..1585009) Pseudomonas putida KT2440 1046139 NP_743548.1 CDS PP_1389 NC_002947.3 1585385 1586260 D carboxyphosphonoenolpyruvate phosphonomutase 1585385..1586260 Pseudomonas putida KT2440 1041934 NP_743549.1 CDS PP_1390 NC_002947.3 1586280 1586462 R hypothetical protein complement(1586280..1586462) Pseudomonas putida KT2440 1041939 NP_743550.1 CDS PP_1391 NC_002947.3 1586493 1587401 R similar to GP:9945879; identified by sequence similarity; LysR family transcriptional regulator complement(1586493..1587401) Pseudomonas putida KT2440 1043922 NP_743551.1 CDS PP_1392 NC_002947.3 1587585 1588199 D identified by match to PFAM protein family HMM PF02254; NAD-dependent epimerase/dehydratase 1587585..1588199 Pseudomonas putida KT2440 1043879 NP_743552.1 CDS PP_1393 NC_002947.3 1588219 1589094 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(1588219..1589094) Pseudomonas putida KT2440 1043884 NP_743553.1 CDS PP_1394 NC_002947.3 1589208 1590845 D similar to GB:M36340, GB:M84326, SP:P16587, SP:P32889, PID:178156, PID:178164, and PID:178983; identified by sequence similarity; hypothetical protein 1589208..1590845 Pseudomonas putida KT2440 1043901 NP_743554.1 CDS PP_1395 NC_002947.3 1590969 1591889 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(1590969..1591889) Pseudomonas putida KT2440 1041904 NP_743555.1 CDS PP_1396 NC_002947.3 1592092 1592385 D similar to GP:9948055; identified by sequence similarity; antibiotic biosynthesis monooxygenase 1592092..1592385 Pseudomonas putida KT2440 1043880 NP_743556.1 CDS PP_1397 NC_002947.3 1592402 1592668 D hypothetical protein 1592402..1592668 Pseudomonas putida KT2440 1042409 NP_743557.1 CDS PP_1398 NC_002947.3 1592669 1593274 R similar to GP:10174898, and GP:15074361; identified by sequence similarity; hypothetical protein complement(1592669..1593274) Pseudomonas putida KT2440 1043914 NP_743558.1 CDS PP_1399 NC_002947.3 1593394 1593900 R hypothetical protein complement(1593394..1593900) Pseudomonas putida KT2440 1043909 NP_743559.1 CDS PP_1400 NC_002947.3 1594099 1595418 R identified by match to PFAM protein family HMM PF00083; metabolite/H+ symportermajor facilitator superfamily metabolite/H+ symporter complement(1594099..1595418) Pseudomonas putida KT2440 1042608 NP_743560.1 CDS dctD NC_002947.3 1595672 1597006 R similar to GB:X14046, SP:P11049, and PID:29794; identified by sequence similarity; Fis family transcriptional regulator complement(1595672..1597006) Pseudomonas putida KT2440 1041970 NP_743561.1 CDS dctB NC_002947.3 1597000 1598757 R similar to SP:P13633; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase complement(1597000..1598757) Pseudomonas putida KT2440 1043290 NP_743562.1 CDS bglX NC_002947.3 1598888 1601179 R similar to GB:K03192, and PID:181322; identified by sequence similarity; beta-glucosidase complement(1598888..1601179) Pseudomonas putida KT2440 1043899 NP_743563.1 CDS PP_1404 NC_002947.3 1601366 1601983 D similar to GP:14024253, GB:U11702, and PID:510692; identified by sequence similarity; hypothetical protein 1601366..1601983 Pseudomonas putida KT2440 1041587 NP_743564.1 CDS PP_1405 NC_002947.3 1601916 1603370 R hypothetical protein complement(1601916..1603370) Pseudomonas putida KT2440 1046137 NP_743565.1 CDS PP_1406 NC_002947.3 1603397 1604407 R hypothetical protein complement(1603397..1604407) Pseudomonas putida KT2440 1046134 NP_743566.1 CDS PP_1407 NC_002947.3 1604540 1606246 R identified by match to PFAM protein family HMM PF00916; sulfate transporter complement(1604540..1606246) Pseudomonas putida KT2440 1046122 NP_743567.1 CDS phaG NC_002947.3 1606642 1607529 R similar to GP:3551793, and GP:3551793; identified by sequence similarity; alpha/beta hydrolase complement(1606642..1607529) Pseudomonas putida KT2440 1046114 NP_743568.1 CDS PP_1410 NC_002947.3 1608574 1608807 R hypothetical protein complement(1608574..1608807) Pseudomonas putida KT2440 1046109 NP_743569.1 CDS PP_1411 NC_002947.3 1608779 1610260 R identified by match to PFAM protein family HMM PF00990; diguanylate cyclase complement(1608779..1610260) Pseudomonas putida KT2440 1046106 NP_743570.1 CDS PP_1412 NC_002947.3 1610967 1612073 R identified by match to PFAM protein family HMM PF00378; enoyl-CoA hydratase complement(1610967..1612073) Pseudomonas putida KT2440 1046103 NP_743571.1 CDS ung NC_002947.3 1612200 1612892 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1612200..1612892 Pseudomonas putida KT2440 1046099 NP_743572.1 CDS ushA NC_002947.3 1612919 1614601 R similar to GB:M94964, PID:531810, and SP:P45602; identified by sequence similarity; 5`-nucleotidase complement(1612919..1614601) Pseudomonas putida KT2440 1045972 NP_743573.1 CDS PP_1415 NC_002947.3 1614692 1615747 R similar to GP:3164104; identified by sequence similarity; hypothetical protein complement(1614692..1615747) Pseudomonas putida KT2440 1045918 NP_743574.1 CDS PP_1416 NC_002947.3 1615740 1617254 R similar to GP:11128404; identified by sequence similarity; tricarboxylate transport protein TctA complement(1615740..1617254) Pseudomonas putida KT2440 1045917 NP_743575.1 CDS PP_1417 NC_002947.3 1617256 1617741 R similar to GP:11128403; identified by sequence similarity; tricarboxylate transport protein TctB complement(1617256..1617741) Pseudomonas putida KT2440 1045878 NP_743576.1 CDS PP_1418 NC_002947.3 1617914 1618894 R similar to GP:11128402; identified by sequence similarity; tricarboxylate transport protein TctC complement(1617914..1618894) Pseudomonas putida KT2440 1045876 NP_743577.1 CDS PP_1419 NC_002947.3 1618941 1620230 R similar to GP:9946642; identified by sequence similarity; porin complement(1618941..1620230) Pseudomonas putida KT2440 1045868 NP_743578.1 CDS tctD NC_002947.3 1620431 1621102 D identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator 1620431..1621102 Pseudomonas putida KT2440 1045866 NP_743579.1 CDS PP_1421 NC_002947.3 1621083 1622474 D similar to GP:9946644, GP:9946644, and GP:11128400; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 1621083..1622474 Pseudomonas putida KT2440 1045863 NP_743580.1 CDS PP_1422 NC_002947.3 1622540 1623352 R signal transduction protein complement(1622540..1623352) Pseudomonas putida KT2440 1045862 NP_743581.1 CDS PP_1423 NC_002947.3 1623402 1624343 R identified by match to PFAM protein family HMM PF01571; hypothetical protein complement(1623402..1624343) Pseudomonas putida KT2440 1045861 NP_743582.1 CDS PP_1424 NC_002947.3 1624477 1624731 D identified by match to PFAM protein family HMM PF03937; hypothetical protein 1624477..1624731 Pseudomonas putida KT2440 1045860 NP_743583.1 CDS PP_1425 NC_002947.3 1624715 1625173 D hypothetical protein 1624715..1625173 Pseudomonas putida KT2440 1045858 NP_743584.1 CDS nadB NC_002947.3 1625230 1626834 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1625230..1626834) Pseudomonas putida KT2440 1045857 NP_743585.1 CDS algU NC_002947.3 1627269 1627850 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 1627269..1627850 Pseudomonas putida KT2440 1045855 NP_743586.1 CDS mucA NC_002947.3 1627884 1628474 D identified by match to PFAM protein family HMM PF03873; anti sigma-E protein, RseA 1627884..1628474 Pseudomonas putida KT2440 1045853 NP_743587.1 CDS algN NC_002947.3 1628487 1629452 D identified by match to PFAM protein family HMM PF03888; sigma E regulatory protein MucB/RseB 1628487..1629452 Pseudomonas putida KT2440 1045852 NP_743588.1 CDS algY NC_002947.3 1629584 1631062 D similar to GB:Z31695, PID:469144, GB:Z31695, and PID:469144; identified by sequence similarity; protease Do 1629584..1631062 Pseudomonas putida KT2440 1045851 NP_743589.1 CDS lepA NC_002947.3 1631243 1633042 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1631243..1633042 Pseudomonas putida KT2440 1045850 NP_743590.1 CDS lepB NC_002947.3 1633048 1633902 D similar to GB:L19182, PID:307151, GB:L19182, and PID:307151; identified by sequence similarity; signal peptidase I 1633048..1633902 Pseudomonas putida KT2440 1045849 NP_743591.1 CDS rnc NC_002947.3 1634066 1634755 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1634066..1634755 Pseudomonas putida KT2440 1045848 NP_743592.1 CDS era NC_002947.3 1634742 1635650 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1634742..1635650 Pseudomonas putida KT2440 1045846 NP_743593.1 CDS recO NC_002947.3 1635820 1636503 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1635820..1636503 Pseudomonas putida KT2440 1045843 NP_743594.1 CDS pdxJ NC_002947.3 1636547 1637287 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1636547..1637287 Pseudomonas putida KT2440 1045842 NP_743595.1 CDS PP_1437 NC_002947.3 1637353 1638735 R identified by match to TIGR protein family HMM TIGR01386; heavy metal sensor histidine kinase complement(1637353..1638735) Pseudomonas putida KT2440 1045840 NP_743596.1 CDS czrR-2 NC_002947.3 1638732 1639406 R similar to GP:12484568; identified by sequence similarity; DNA-binding response regulator CzrR complement(1638732..1639406) Pseudomonas putida KT2440 1045839 NP_743597.1 CDS PP_1439 NC_002947.3 1639717 1639920 D hypothetical protein 1639717..1639920 Pseudomonas putida KT2440 1045835 NP_743598.1 CDS PP_1440 NC_002947.3 1639990 1640946 R identified by match to TIGR protein family HMM TIGR00452; methyltransferase complement(1639990..1640946) Pseudomonas putida KT2440 1045833 NP_743599.1 CDS PP_1441 NC_002947.3 1640943 1641686 R identified by match to TIGR protein family HMM TIGR00740; methyltransferase complement(1640943..1641686) Pseudomonas putida KT2440 1045831 NP_743600.1 CDS PP_1442 NC_002947.3 1641776 1642348 R similar to GP:9946667; identified by sequence similarity; hypothetical protein complement(1641776..1642348) Pseudomonas putida KT2440 1045828 NP_743601.1 CDS lon-1 NC_002947.3 1642320 1644737 R identified by match to PFAM protein family HMM PF00004; ATP-dependent protease La complement(1642320..1644737) Pseudomonas putida KT2440 1045825 NP_743602.1 CDS gcd NC_002947.3 1644941 1647352 R identified by match to PFAM protein family HMM PF01011; glucose dehydrogenase complement(1644941..1647352) Pseudomonas putida KT2440 1045820 NP_743603.1 CDS oprB-2 NC_002947.3 1647383 1648717 R similar to GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, SP:P13500, GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, and SP:P13500; identified by sequence similarity; porin complement(1647383..1648717) Pseudomonas putida KT2440 1045819 NP_743604.1 CDS PP_1446 NC_002947.3 1649013 1651055 R identified by match to PFAM protein family HMM PF00593; TonB-dependent receptor complement(1649013..1651055) Pseudomonas putida KT2440 1045816 NP_743605.1 CDS PP_1447 NC_002947.3 1651192 1651440 D hypothetical protein 1651192..1651440 Pseudomonas putida KT2440 1045814 NP_743606.1 CDS PP_1448 NC_002947.3 1651442 1652077 D similar to GP:4726002; identified by sequence similarity; hypothetical protein 1651442..1652077 Pseudomonas putida KT2440 1045810 NP_743607.1 CDS PP_1449 NC_002947.3 1652238 1656764 R similar to GP:7741588, and GP:7741588; identified by sequence similarity; filamentous hemagglutinin complement(1652238..1656764) Pseudomonas putida KT2440 1045808 NP_743608.1 CDS PP_1450 NC_002947.3 1656792 1658489 R similar to GB:J02677, SP:P05102, and PID:148949; identified by sequence similarity; TPS family activation/secretion protein complement(1656792..1658489) Pseudomonas putida KT2440 1045807 NP_743609.1 CDS PP_1451 NC_002947.3 1658635 1659189 R identified by match to PFAM protein family HMM PF03734; hypothetical protein complement(1658635..1659189) Pseudomonas putida KT2440 1045804 NP_743610.1 CDS PP_1452 NC_002947.3 1659212 1659763 R identified by match to PFAM protein family HMM PF00293; NUDIX hydrolase complement(1659212..1659763) Pseudomonas putida KT2440 1045803 NP_743611.1 CDS PP_1453 NC_002947.3 1659887 1660486 D identified by match to PFAM protein family HMM PF00293; NUDIX hydrolase 1659887..1660486 Pseudomonas putida KT2440 1045802 NP_743612.1 CDS PP_1454 NC_002947.3 1660530 1661054 D similar to GB:J00124, GB:X59475, GB:M28646, SP:P02533, and PID:386848; identified by sequence similarity; anhydrase 3 protein 1660530..1661054 Pseudomonas putida KT2440 1045797 NP_743613.1 CDS PP_1455 NC_002947.3 1661023 1661247 D similar to GP:9949921; identified by sequence similarity; hypothetical protein 1661023..1661247 Pseudomonas putida KT2440 1045793 NP_743614.1 CDS PP_1456 NC_002947.3 1661325 1661792 D identified by match to PFAM protein family HMM PF02592; hypothetical protein 1661325..1661792 Pseudomonas putida KT2440 1045791 NP_743615.1 CDS purT NC_002947.3 1661869 1663050 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1661869..1663050 Pseudomonas putida KT2440 1045790 NP_743616.1 CDS PP_1458 NC_002947.3 1663088 1664386 R identified by match to PFAM protein family HMM PF03605; metabolite-proton symporter complement(1663088..1664386) Pseudomonas putida KT2440 1045788 NP_743617.1 CDS PP_1459 NC_002947.3 1664658 1665863 R identified by match to PFAM protein family HMM PF03471; hypothetical protein complement(1664658..1665863) Pseudomonas putida KT2440 1045786 NP_743618.1 CDS PP_1460 NC_002947.3 1665873 1666724 R similar to GP:9949915; identified by sequence similarity; cytochrome c assembly protein complement(1665873..1666724) Pseudomonas putida KT2440 1045782 NP_743619.1 CDS ffh NC_002947.3 1666755 1668371 D identified by match to PFAM protein family HMM PF00448; signal recognition particle protein 1666755..1668371 Pseudomonas putida KT2440 1045779 NP_743620.2 CDS rpsP NC_002947.3 1668631 1668882 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1668631..1668882 Pseudomonas putida KT2440 1045775 NP_743621.1 CDS rimM NC_002947.3 1668888 1669424 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1668888..1669424 Pseudomonas putida KT2440 1045770 NP_743622.1 CDS trmD NC_002947.3 1669428 1670180 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1669428..1670180 Pseudomonas putida KT2440 1045768 NP_743623.1 CDS rplS NC_002947.3 1670223 1670573 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1670223..1670573 Pseudomonas putida KT2440 1045765 NP_743624.1 CDS PP_1466 NC_002947.3 1670668 1671075 D identified by match to PFAM protein family HMM PF01662; thioesterase 1670668..1671075 Pseudomonas putida KT2440 1045764 NP_743625.1 CDS PP_1467 NC_002947.3 1671079 1672884 R identified by match to PFAM protein family HMM PF04290; sodium/hydrogen exchanger complement(1671079..1672884) Pseudomonas putida KT2440 1045762 NP_743626.1 CDS xerD NC_002947.3 1672953 1673849 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1672953..1673849 Pseudomonas putida KT2440 1045761 NP_743627.1 CDS dsbC NC_002947.3 1673964 1674746 D similar to GP:3135321, GB:Z11559, GB:M58510, SP:P21399, PID:33963, and PID:896473; identified by sequence similarity; thiol:disulfide interchange protein DsbC 1673964..1674746 Pseudomonas putida KT2440 1045760 NP_743628.1 CDS hom NC_002947.3 1674830 1676134 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1674830..1676134 Pseudomonas putida KT2440 1045758 NP_743629.1 CDS thrC NC_002947.3 1676194 1677603 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1676194..1677603 Pseudomonas putida KT2440 1045757 NP_743630.1 CDS PP_1472 NC_002947.3 1677569 1678216 R hypothetical protein complement(1677569..1678216) Pseudomonas putida KT2440 1045755 NP_743631.1 CDS PP_1473 NC_002947.3 1678224 1678514 D similar to GP:9948826; identified by sequence similarity; hypothetical protein 1678224..1678514 Pseudomonas putida KT2440 1045753 NP_743632.1 CDS PP_1474 NC_002947.3 1678701 1679576 R hypothetical protein complement(1678701..1679576) Pseudomonas putida KT2440 1045752 NP_743633.1 CDS PP_1475 NC_002947.3 1679597 1680796 R identified by match to PFAM protein family HMM PF02515; L-carnitine dehydratase/bile acid-inducible protein F complement(1679597..1680796) Pseudomonas putida KT2440 1045750 NP_743634.1 CDS PP_1476 NC_002947.3 1680927 1681469 D similar to GP:9949892; identified by sequence similarity; YaeQ family protein 1680927..1681469 Pseudomonas putida KT2440 1045746 NP_743635.1 CDS recJ NC_002947.3 1681478 1683187 D similar to GB:D00173, GB:S46963, SP:P11712, SP:P11713, SP:P33259, SP:P33261, PID:181362, PID:181364, PID:181366, and PID:219571; identified by sequence similarity; single-stranded-DNA-specific exonuclease RecJ 1681478..1683187 Pseudomonas putida KT2440 1045743 NP_743636.1 CDS PP_1478 NC_002947.3 1683418 1684524 D similar to GP:6049281; identified by sequence similarity; NADH:flavin oxidoreductase 1683418..1684524 Pseudomonas putida KT2440 1045742 NP_743637.1 CDS hicB-1 NC_002947.3 1684535 1684867 R similar to GP:3603326; identified by sequence similarity; hicB protein complement(1684535..1684867) Pseudomonas putida KT2440 1045734 NP_743638.1 CDS hicA-1 NC_002947.3 1684864 1685118 R similar to GP:3603340, and GP:3603340; identified by sequence similarity; hicA protein complement(1684864..1685118) Pseudomonas putida KT2440 1045732 NP_743639.1 CDS PP_1481 NC_002947.3 1685350 1686774 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1685350..1686774) Pseudomonas putida KT2440 1045730 NP_743640.1 CDS PP_1482 NC_002947.3 1686792 1687598 R similar to SP:P37640, PID:466657, GB:U00096, and PID:1789937; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein complement(1686792..1687598) Pseudomonas putida KT2440 1045726 NP_743641.1 CDS PP_1483 NC_002947.3 1687588 1688499 R similar to SP:P37640, PID:466657, GB:U00096, and PID:1789937; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein complement(1687588..1688499) Pseudomonas putida KT2440 1045724 NP_743642.1 CDS PP_1484 NC_002947.3 1688501 1689532 R identified by match to TIGR protein family HMM TIGR00968; spermidine/putrescine ABC transporter ATPase complement(1688501..1689532) Pseudomonas putida KT2440 1045718 NP_743643.1 CDS PP_1485 NC_002947.3 1689563 1689697 D hypothetical protein 1689563..1689697 Pseudomonas putida KT2440 1045717 NP_743644.1 CDS PP_1486 NC_002947.3 1689681 1690826 R similar to SP:P37081, GB:X66059, and PID:43941; identified by sequence similarity; polyamine ABC transporter substrate-binding protein complement(1689681..1690826) Pseudomonas putida KT2440 1045715 NP_743645.1 CDS PP_1487 NC_002947.3 1691049 1691729 D similar to GP:9949877; identified by sequence similarity; hypothetical protein 1691049..1691729 Pseudomonas putida KT2440 1045709 NP_743646.1 CDS PP_1488 NC_002947.3 1691900 1693522 D identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 1691900..1693522 Pseudomonas putida KT2440 1045707 NP_743647.1 CDS PP_1489 NC_002947.3 1693528 1694034 D identified by match to PFAM protein family HMM PF01584; chemotaxis protein CheW 1693528..1694034 Pseudomonas putida KT2440 1045703 NP_743648.1 CDS PP_1490 NC_002947.3 1694031 1695305 D identified by match to PFAM protein family HMM PF00515; methyltransferase, CheR-like 1694031..1695305 Pseudomonas putida KT2440 1045696 NP_743649.1 CDS PP_1491 NC_002947.3 1695320 1695967 D identified by match to PFAM protein family HMM PF01584; chemotaxis protein CheW 1695320..1695967 Pseudomonas putida KT2440 1045692 NP_743650.1 CDS PP_1492 NC_002947.3 1695964 1698252 D identified by match to PFAM protein family HMM PF00072; chemotaxis protein CheA 1695964..1698252 Pseudomonas putida KT2440 1045691 NP_743651.1 CDS PP_1493 NC_002947.3 1698249 1699262 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1698249..1699262 Pseudomonas putida KT2440 1045676 NP_743652.1 CDS PP_1494 NC_002947.3 1699311 1700318 D identified by match to PFAM protein family HMM PF00990; response regulator/GGDEF domain-containing protein 1699311..1700318 Pseudomonas putida KT2440 1045673 NP_743653.1 CDS lysS NC_002947.3 1701645 1703147 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1701645..1703147 Pseudomonas putida KT2440 1045667 NP_743654.1 CDS PP_1497 NC_002947.3 1703314 1704030 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 1703314..1704030 Pseudomonas putida KT2440 1045663 NP_743655.1 CDS PP_1498 NC_002947.3 1704061 1704609 D similar to GP:9949863; identified by sequence similarity; lipoprotein 1704061..1704609 Pseudomonas putida KT2440 1045567 NP_743656.1 CDS PP_1499 NC_002947.3 1704632 1705960 D similar to GP:9949862; identified by sequence similarity; hypothetical protein 1704632..1705960 Pseudomonas putida KT2440 1045522 NP_743657.1 CDS PP_1500 NC_002947.3 1705932 1706855 D identified by match to TIGR protein family HMM TIGR01738; lipoprotein 1705932..1706855 Pseudomonas putida KT2440 1045520 NP_743658.1 CDS PP_1501 NC_002947.3 1706852 1707178 D hypothetical protein 1706852..1707178 Pseudomonas putida KT2440 1045519 NP_743659.1 CDS PP_1502 NC_002947.3 1707320 1708111 R similar to GP:9949856; identified by sequence similarity; OmpA/MotB domain-containing protein complement(1707320..1708111) Pseudomonas putida KT2440 1045518 NP_743660.1 CDS PP_1503 NC_002947.3 1708162 1708632 R hypothetical protein complement(1708162..1708632) Pseudomonas putida KT2440 1045516 NP_743661.1 CDS PP_1504 NC_002947.3 1708852 1709229 R similar to GP:9949852; identified by sequence similarity; hypothetical protein complement(1708852..1709229) Pseudomonas putida KT2440 1045515 NP_743662.1 CDS ppc NC_002947.3 1709378 1712005 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1709378..1712005 Pseudomonas putida KT2440 1045514 NP_743663.1 CDS adk NC_002947.3 1712263 1712913 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1712263..1712913 Pseudomonas putida KT2440 1045513 NP_743664.1 CDS PP_1507 NC_002947.3 1713053 1713727 D similar to GP:9949849, and GP:9949849; identified by sequence similarity; hypothetical protein 1713053..1713727 Pseudomonas putida KT2440 1045512 NP_743665.1 CDS PP_1508 NC_002947.3 1713829 1714149 D similar to GP:9949848; identified by sequence similarity; hypothetical protein 1713829..1714149 Pseudomonas putida KT2440 1045511 NP_743666.1 CDS PP_1509 NC_002947.3 1714153 1715022 D similar to GP:9949847; identified by sequence similarity; hypothetical protein 1714153..1715022 Pseudomonas putida KT2440 1045510 NP_743667.1 CDS PP_1510 NC_002947.3 1715051 1715881 D similar to SP:P37660, PID:466678, GB:U00096, and PID:1789961; identified by sequence similarity; carboxyvinyl-carboxyphosphonate phosphorylmutase 1715051..1715881 Pseudomonas putida KT2440 1045509 NP_743668.1 CDS PP_1511 NC_002947.3 1715881 1716570 D similar to GP:9949844; identified by sequence similarity; extensin 1715881..1716570 Pseudomonas putida KT2440 1045507 NP_743669.1 CDS PP_1512 NC_002947.3 1716573 1717193 R hypothetical protein complement(1716573..1717193) Pseudomonas putida KT2440 1045506 NP_743670.1 CDS PP_1513 NC_002947.3 1717298 1718074 D similar to GP:9949843; identified by sequence similarity; hypothetical protein 1717298..1718074 Pseudomonas putida KT2440 1045505 NP_743671.1 CDS PP_1514 NC_002947.3 1718267 1719235 D similar to GP:2950328; identified by sequence similarity; hypothetical protein 1718267..1719235 Pseudomonas putida KT2440 1045503 NP_743672.1 CDS PP_1515 NC_002947.3 1719365 1720006 R identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator complement(1719365..1720006) Pseudomonas putida KT2440 1045501 NP_743673.1 CDS PP_1516 NC_002947.3 1720257 1721357 D identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1720257..1721357 Pseudomonas putida KT2440 1045500 NP_743674.1 CDS PP_1517 NC_002947.3 1721364 1724429 D identified by match to PFAM protein family HMM PF03599; acriflavin resistance protein 1721364..1724429 Pseudomonas putida KT2440 1045498 NP_743675.1 CDS PP_1518 NC_002947.3 1724478 1725164 R similar to GP:9949838; identified by sequence similarity; hypothetical protein complement(1724478..1725164) Pseudomonas putida KT2440 1045497 NP_743676.1 CDS PP_1519 NC_002947.3 1725198 1725596 R lipoprotein complement(1725198..1725596) Pseudomonas putida KT2440 1045496 NP_743677.1 CDS plsB NC_002947.3 1725673 1728159 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(1725673..1728159) Pseudomonas putida KT2440 1045494 NP_743678.1 CDS PP_1521 NC_002947.3 1728229 1728369 R hypothetical protein complement(1728229..1728369) Pseudomonas putida KT2440 1045492 NP_743679.1 CDS cspA-1 NC_002947.3 1728393 1728602 D similar to SP:P08301, and PID:45470; identified by sequence similarity; cold shock protein CspA 1728393..1728602 Pseudomonas putida KT2440 1045491 NP_743680.1 CDS PP_1523 NC_002947.3 1728725 1729102 R similar to GP:9947083, and GP:9947083; identified by sequence similarity; hypothetical protein complement(1728725..1729102) Pseudomonas putida KT2440 1045490 NP_743681.1 CDS PP_1524 NC_002947.3 1729120 1729932 R identified by match to PFAM protein family HMM PF01209; rRNA (guanine-N(1)-)-methyltransferase complement(1729120..1729932) Pseudomonas putida KT2440 1045489 NP_743682.1 CDS dapE NC_002947.3 1729932 1731083 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1729932..1731083) Pseudomonas putida KT2440 1045488 NP_743683.1 CDS PP_1526 NC_002947.3 1731274 1733865 R similar to GP:3687658; identified by sequence similarity; beta-(1-3)-glucosyl transferase complement(1731274..1733865) Pseudomonas putida KT2440 1045487 NP_743684.1 CDS PP_1527 NC_002947.3 1733979 1734794 D identified by match to PFAM protein family HMM PF00899; UBA/THIF-type NAD/FAD binding protein 1733979..1734794 Pseudomonas putida KT2440 1045486 NP_743685.1 CDS PP_1528 NC_002947.3 1734907 1735317 R identified by match to PFAM protein family HMM PF02657; Fe-S metabolism associated SufE complement(1734907..1735317) Pseudomonas putida KT2440 1045485 NP_743686.1 CDS csdA NC_002947.3 1735314 1736519 R similar to GP:4520378, GB:M64855, GB:S71057, GB:M64856, GB:M64857, GB:X67171, GB:X93620, SP:P01594, SP:P01596, SP:P01597, SP:P01598, SP:P01600, SP:P01602, SP:P01606, SP:P01607, SP:P01608, SP:P01609, SP:P01611, SP:P04431, SP:P04432, SP:P80362, PID:185964, PID:185966, PID:185968, PID:470556, PID:470562, PID:470576, PID:470592, PID:470596, PID:470598, PID:470600, PID:470618, PID:483882, PID:483884, PID:483886, PID:483902, PID:506423, PID:561705, PID:563650, PID:567134, PID:567136, PID:567138, PID:567146, PID:567148, PID:567150, PID:567154, PID:567158, PID:567172, PID:575258, PID:587324, PID:587326, PID:587328, PID:587330, PID:587332, PID:587334, PID:598171, PID:619427, PID:619601, PID:619602, PID:619603, PID:619615, PID:619616, PID:619624, PID:632988, PID:642240, PID:642378, PID:663000, PID:663001, PID:722540, PID:732738, PID:732746, PID:736242, PID:736244, PID:758085, PID:758589, PID:758599, PID:758601, PID:762937, PID:790811, PID:791024, PID:791036, PID:860994, PID:861002, PID:896278, PID:940528, PID:940529; cysteine sulfinate desulfinase complement(1735314..1736519) Pseudomonas putida KT2440 1045484 NP_743687.1 CDS PP_1530 NC_002947.3 1736601 1737635 R identified by match to TIGR protein family HMM TIGR00965; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1736601..1737635) Pseudomonas putida KT2440 1045483 NP_743688.1 CDS PP_1531 NC_002947.3 1737667 1738014 R identified by match to TIGR protein family HMM TIGR01617; arsenate reductase complement(1737667..1738014) Pseudomonas putida KT2440 1045481 NP_743689.1 CDS PP_1532 NC_002947.3 1738082 1739188 R similar to GP:4520380, and GP:4520380; identified by sequence similarity; phage integrase complement(1738082..1739188) Pseudomonas putida KT2440 1045479 NP_743690.1 CDS PP_1533 NC_002947.3 1739169 1739411 R similar to SP:P06524, GB:X02423, GB:X03933, GB:X16905, PID:154815, PID:39184, and PID:39186; identified by sequence similarity; excisionase complement(1739169..1739411) Pseudomonas putida KT2440 1045477 NP_743691.1 CDS PP_1534 NC_002947.3 1739445 1739762 R hypothetical protein complement(1739445..1739762) Pseudomonas putida KT2440 1045476 NP_743692.1 CDS PP_1535 NC_002947.3 1739819 1740283 R similar to GP:5823652, and GP:2570059; identified by sequence similarity; methyltransferase complement(1739819..1740283) Pseudomonas putida KT2440 1045475 NP_743693.1 CDS PP_1536 NC_002947.3 1740298 1740681 R hypothetical protein complement(1740298..1740681) Pseudomonas putida KT2440 1045474 NP_743694.1 CDS PP_1537 NC_002947.3 1740678 1740905 R hypothetical protein complement(1740678..1740905) Pseudomonas putida KT2440 1045473 NP_743695.1 CDS PP_1538 NC_002947.3 1741156 1741908 R similar to GP:2105134; identified by sequence similarity; hypothetical protein complement(1741156..1741908) Pseudomonas putida KT2440 1045472 NP_743696.1 CDS PP_1539 NC_002947.3 1741992 1742552 R hypothetical protein complement(1741992..1742552) Pseudomonas putida KT2440 1045470 NP_743697.1 CDS PP_1540 NC_002947.3 1742872 1743096 R similar to GP:9949581; identified by sequence similarity; hypothetical protein complement(1742872..1743096) Pseudomonas putida KT2440 1045468 NP_743698.1 CDS PP_1541 NC_002947.3 1743287 1744207 R similar to GP:4520381, and GP:4520381; identified by sequence similarity; methyltransferase complement(1743287..1744207) Pseudomonas putida KT2440 1045467 NP_743699.1 CDS PP_1542 NC_002947.3 1744274 1744870 R hypothetical protein complement(1744274..1744870) Pseudomonas putida KT2440 1045465 NP_743700.1 CDS PP_1543 NC_002947.3 1745211 1745756 R hypothetical protein complement(1745211..1745756) Pseudomonas putida KT2440 1045463 NP_743701.1 CDS PP_1544 NC_002947.3 1746075 1746461 R hypothetical protein complement(1746075..1746461) Pseudomonas putida KT2440 1045462 NP_743702.1 CDS PP_1545 NC_002947.3 1746543 1747001 R hypothetical protein complement(1746543..1747001) Pseudomonas putida KT2440 1045461 NP_743703.1 CDS PP_1546 NC_002947.3 1746998 1747267 R hypothetical protein complement(1746998..1747267) Pseudomonas putida KT2440 1045460 NP_743704.1 CDS PP_1547 NC_002947.3 1747900 1748235 D hypothetical protein 1747900..1748235 Pseudomonas putida KT2440 1045458 NP_743705.1 CDS PP_1548 NC_002947.3 1748226 1748663 R similar to GP:10432471, GB:U01100, PID:1220435, and PID:434023; identified by sequence similarity; hypothetical protein complement(1748226..1748663) Pseudomonas putida KT2440 1045457 NP_743706.1 CDS PP_1549 NC_002947.3 1749380 1750231 R identified by match to PFAM protein family HMM PF00717; Cro/CI family transcriptional regulator complement(1749380..1750231) Pseudomonas putida KT2440 1045456 NP_743707.1 CDS PP_1550 NC_002947.3 1750320 1750496 D similar to GP:4539473; identified by sequence similarity; Cro/CI family transcriptional regulator 1750320..1750496 Pseudomonas putida KT2440 1045455 NP_743708.1 CDS PP_1551 NC_002947.3 1750638 1751492 D similar to GP:8895171, and GP:8895171; identified by sequence similarity; phage replication protein O 1750638..1751492 Pseudomonas putida KT2440 1045454 NP_743709.1 CDS PP_1552 NC_002947.3 1751590 1752294 D similar to GP:3294483, and SP:P07905; identified by sequence similarity; IstB domain-containing protein ATP-binding protein 1751590..1752294 Pseudomonas putida KT2440 1045452 NP_743710.1 CDS PP_1553 NC_002947.3 1752297 1752593 D similar to GP:6901638, and GP:6901638; identified by sequence similarity; hypothetical protein 1752297..1752593 Pseudomonas putida KT2440 1045451 NP_743711.1 CDS PP_1554 NC_002947.3 1752590 1753012 D hypothetical protein 1752590..1753012 Pseudomonas putida KT2440 1045450 NP_743712.1 CDS PP_1555 NC_002947.3 1753027 1754298 D similar to GB:M15502, SP:P07954, PID:1545996, and PID:182794; identified by sequence similarity; phage integrase 1753027..1754298 Pseudomonas putida KT2440 1045449 NP_743713.1 CDS PP_1556 NC_002947.3 1754295 1754615 D similar to GP:8895178, and GP:8895178; identified by sequence similarity; hypothetical protein 1754295..1754615 Pseudomonas putida KT2440 1045447 NP_743714.1 CDS PP_1557 NC_002947.3 1754588 1754929 D hypothetical protein 1754588..1754929 Pseudomonas putida KT2440 1045369 NP_743715.1 CDS PP_1558 NC_002947.3 1754940 1755281 D similar to GB:X64057, SP:P28768, and PID:1364257; identified by sequence similarity; antitermination protein Q 1754940..1755281 Pseudomonas putida KT2440 1045368 NP_743716.1 CDS PP_1559 NC_002947.3 1755481 1755804 D similar to GP:6066815, GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; phage holin 1755481..1755804 Pseudomonas putida KT2440 1045367 NP_743717.1 CDS PP_1560 NC_002947.3 1755865 1756047 D hypothetical protein 1755865..1756047 Pseudomonas putida KT2440 1045366 NP_743718.1 CDS PP_1561 NC_002947.3 1756038 1756406 D similar to GP:6066821, and GP:6066821; identified by sequence similarity; phage holin 1756038..1756406 Pseudomonas putida KT2440 1045365 NP_743719.1 CDS PP_1562 NC_002947.3 1756534 1756917 D similar to GP:5059248, and GP:5059248; identified by sequence similarity; phage terminase small subunit 1756534..1756917 Pseudomonas putida KT2440 1045362 NP_743720.1 CDS PP_1563 NC_002947.3 1756941 1758626 D similar to GP:5059249, and GP:13361062; identified by sequence similarity; phage terminase, large subunit 1756941..1758626 Pseudomonas putida KT2440 1045361 NP_743721.1 CDS PP_1564 NC_002947.3 1758638 1758802 D hypothetical protein 1758638..1758802 Pseudomonas putida KT2440 1045359 NP_743722.1 CDS PP_1565 NC_002947.3 1758834 1760129 D similar to GP:5059250, and GP:5059250; identified by sequence similarity; HK97 family phage portal protein 1758834..1760129 Pseudomonas putida KT2440 1045358 NP_743723.1 CDS PP_1566 NC_002947.3 1760126 1760827 D similar to GP:6863115, SP:P17058, PID:46001, and PID:46126; identified by sequence similarity; head maturation protease 1760126..1760827 Pseudomonas putida KT2440 1045357 NP_743724.1 CDS PP_1567 NC_002947.3 1760849 1762093 D similar to GP:5059252, and GP:5059252; identified by sequence similarity; HK97 family phage major capsid protein 1760849..1762093 Pseudomonas putida KT2440 1045355 NP_743725.1 CDS PP_1568 NC_002947.3 1762135 1762359 D hypothetical protein 1762135..1762359 Pseudomonas putida KT2440 1045353 NP_743726.1 CDS PP_1569 NC_002947.3 1762363 1762839 D hypothetical protein 1762363..1762839 Pseudomonas putida KT2440 1045348 NP_743727.1 CDS PP_1570 NC_002947.3 1762839 1763180 D similar to GP:6863120, and GP:6901597; identified by sequence similarity; head-tail adaptor 1762839..1763180 Pseudomonas putida KT2440 1045347 NP_743728.1 CDS PP_1571 NC_002947.3 1763173 1763658 D similar to GP:8895116, and GP:8895116; identified by sequence similarity; hypothetical protein 1763173..1763658 Pseudomonas putida KT2440 1045335 NP_743729.1 CDS PP_1572 NC_002947.3 1763655 1764023 D similar to GP:8895117, and GP:8895117; identified by sequence similarity; hypothetical protein 1763655..1764023 Pseudomonas putida KT2440 1045330 NP_743730.1 CDS PP_1573 NC_002947.3 1764089 1764823 D similar to GP:8895118, and GP:6863123; identified by sequence similarity; major tail protein 1764089..1764823 Pseudomonas putida KT2440 1045320 NP_743731.1 CDS PP_1574 NC_002947.3 1764832 1765302 D similar to GP:6863124, and GP:8895119; identified by sequence similarity; hypothetical protein 1764832..1765302 Pseudomonas putida KT2440 1045310 NP_743732.1 CDS PP_1575 NC_002947.3 1765365 1765526 D similar to GP:6863125, and GP:8895120; identified by sequence similarity; hypothetical protein 1765365..1765526 Pseudomonas putida KT2440 1045304 NP_743733.1 CDS PP_1576 NC_002947.3 1765588 1765911 D similar to SP:P22704; identified by sequence similarity; immunity protein 1765588..1765911 Pseudomonas putida KT2440 1045299 NP_743734.1 CDS PP_1577 NC_002947.3 1765958 1768399 D similar to GP:8895121, and GP:6863126; identified by sequence similarity; lambda family phage tail tape measure protein 1765958..1768399 Pseudomonas putida KT2440 1045290 NP_743735.1 CDS PP_1578 NC_002947.3 1768396 1768875 D similar to GP:8895124, and GP:8895124; identified by sequence similarity; hypothetical protein 1768396..1768875 Pseudomonas putida KT2440 1045285 NP_743736.1 CDS PP_1579 NC_002947.3 1769249 1772248 D similar to GP:8895128, and GP:8895128; identified by sequence similarity; hypothetical protein 1769249..1772248 Pseudomonas putida KT2440 1045284 NP_743737.1 CDS PP_1580 NC_002947.3 1772258 1772713 D similar to GP:8895123, and GP:8895123; identified by sequence similarity; hypothetical protein 1772258..1772713 Pseudomonas putida KT2440 1045198 NP_743738.1 CDS PP_1581 NC_002947.3 1772814 1774805 D identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 1772814..1774805 Pseudomonas putida KT2440 1045193 NP_743739.1 CDS PP_1582 NC_002947.3 1774817 1775893 D hypothetical protein 1774817..1775893 Pseudomonas putida KT2440 1045192 NP_743740.1 CDS PP_1583 NC_002947.3 1775921 1776397 D similar to GP:5453372; identified by sequence similarity; structural protein P5 1775921..1776397 Pseudomonas putida KT2440 1045190 NP_743741.1 CDS PP_1584 NC_002947.3 1776394 1776894 D hypothetical protein 1776394..1776894 Pseudomonas putida KT2440 1045189 NP_743742.1 CDS PP_1585 NC_002947.3 1777554 1777853 R similar to GP:9950930; identified by sequence similarity; antidote protein complement(1777554..1777853) Pseudomonas putida KT2440 1045188 NP_743743.1 CDS PP_1586 NC_002947.3 1777862 1778140 R similar to GP:15076084; identified by sequence similarity; killer protein complement(1777862..1778140) Pseudomonas putida KT2440 1045187 NP_743744.1 CDS PP_1587 NC_002947.3 1778337 1780037 D identified by match to PFAM protein family HMM PF03977; Na+/H+ antiporter 1778337..1780037 Pseudomonas putida KT2440 1045184 NP_743745.1 CDS PP_1588 NC_002947.3 1780143 1781339 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(1780143..1781339) Pseudomonas putida KT2440 1045176 NP_743746.1 CDS glnD NC_002947.3 1781370 1784072 R Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1781370..1784072) Pseudomonas putida KT2440 1045160 NP_743747.1 CDS map NC_002947.3 1784114 1784896 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1784114..1784896) Pseudomonas putida KT2440 1045139 NP_743748.1 CDS rpsB NC_002947.3 1785243 1785980 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1785243..1785980 Pseudomonas putida KT2440 1045137 NP_743749.1 CDS tsf NC_002947.3 1786166 1787029 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1786166..1787029 Pseudomonas putida KT2440 1045134 NP_743750.1 CDS pyrH NC_002947.3 1787211 1787954 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1787211..1787954 Pseudomonas putida KT2440 1045133 NP_743751.1 CDS frr NC_002947.3 1787951 1788508 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1787951..1788508 Pseudomonas putida KT2440 1045125 NP_743752.1 CDS uppS NC_002947.3 1788524 1789279 D similar to GB:M88458, SP:P33947, and PID:31218; identified by sequence similarity; UDP diphosphate synthase 1788524..1789279 Pseudomonas putida KT2440 1045122 NP_743753.1 CDS cdsA NC_002947.3 1789279 1790094 D identified by match to PFAM protein family HMM PF01148; phosphatidate cytidylyltransferase 1789279..1790094 Pseudomonas putida KT2440 1045118 NP_743754.1 CDS dxr NC_002947.3 1790067 1791281 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1790067..1791281 Pseudomonas putida KT2440 1045056 NP_743755.1 CDS PP_1598 NC_002947.3 1791347 1792705 D identified by match to PFAM protein family HMM PF02163; zinc metalloprotease 1791347..1792705 Pseudomonas putida KT2440 1045013 NP_743756.1 CDS PP_1599 NC_002947.3 1792779 1795139 D identified by match to PFAM protein family HMM PF01103; surface antigen family outer membrane protein 1792779..1795139 Pseudomonas putida KT2440 1044990 NP_743757.1 CDS ompH NC_002947.3 1795184 1795687 D identified by match to PFAM protein family HMM PF03938; outer membrane chaperone Skp 1795184..1795687 Pseudomonas putida KT2440 1044989 NP_743758.1 CDS lpxD NC_002947.3 1795689 1796744 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1795689..1796744 Pseudomonas putida KT2440 1044945 NP_743759.1 CDS fabZ NC_002947.3 1796808 1797299 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1796808..1797299 Pseudomonas putida KT2440 1044943 NP_743760.1 CDS lpxA NC_002947.3 1797296 1798072 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1797296..1798072 Pseudomonas putida KT2440 1044942 NP_743761.1 CDS lpxB NC_002947.3 1798074 1799201 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1798074..1799201 Pseudomonas putida KT2440 1044937 NP_743762.1 CDS rnhB NC_002947.3 1799203 1799826 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1799203..1799826 Pseudomonas putida KT2440 1044936 NP_743763.1 CDS dnaE NC_002947.3 1800013 1803537 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1800013..1803537 Pseudomonas putida KT2440 1044930 NP_743764.1 CDS accA NC_002947.3 1803644 1804591 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1803644..1804591 Pseudomonas putida KT2440 1044925 NP_743765.1 CDS PP_1608 NC_002947.3 1804763 1806046 D similar to SP:P07603, GB:X02416, and PID:40831; identified by sequence similarity; tRNA(Ile)-lysidine synthetase 1804763..1806046 Pseudomonas putida KT2440 1044923 NP_743766.1 CDS PP_1609 NC_002947.3 1806092 1806232 D hypothetical protein 1806092..1806232 Pseudomonas putida KT2440 1044921 NP_743767.1 CDS pyrG NC_002947.3 1806314 1807942 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1806314..1807942 Pseudomonas putida KT2440 1044918 NP_743768.1 CDS kdsA-1 NC_002947.3 1807946 1808791 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1807946..1808791 Pseudomonas putida KT2440 1044906 NP_743769.1 CDS eno NC_002947.3 1808946 1810235 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1808946..1810235 Pseudomonas putida KT2440 1044904 NP_743770.1 CDS PP_1613 NC_002947.3 1810404 1810685 D similar to GP:9949793; identified by sequence similarity; septum formation initiator 1810404..1810685 Pseudomonas putida KT2440 1044901 NP_743771.1 CDS ispD NC_002947.3 1810682 1811389 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1810682..1811389 Pseudomonas putida KT2440 1044895 NP_743772.1 CDS PP_1615 NC_002947.3 1811517 1812413 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(1811517..1812413) Pseudomonas putida KT2440 1044885 NP_743773.1 CDS PP_1616 NC_002947.3 1812518 1813633 D identified by match to TIGR protein family HMM TIGR01751; D-isomer specific 2-hydroxyacid dehydrogenase 1812518..1813633 Pseudomonas putida KT2440 1044879 NP_743774.1 CDS PP_1617 NC_002947.3 1813642 1814496 D identified by match to PFAM protein family HMM PF00756; S-formylglutathione hydrolase 1813642..1814496 Pseudomonas putida KT2440 1044878 NP_743775.1 CDS ispF NC_002947.3 1814609 1815082 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1814609..1815082 Pseudomonas putida KT2440 1044870 NP_743776.1 CDS truD NC_002947.3 1815079 1816137 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1815079..1816137 Pseudomonas putida KT2440 1044864 NP_743777.1 CDS surE NC_002947.3 1816125 1816874 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1816125..1816874 Pseudomonas putida KT2440 1044860 NP_743778.1 CDS pcm NC_002947.3 1816853 1817548 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1816853..1817548 Pseudomonas putida KT2440 1044857 NP_743779.1 CDS nlpD NC_002947.3 1817855 1818643 D similar to GP:7839531, and GP:7839531; identified by sequence similarity; peptidase M23B 1817855..1818643 Pseudomonas putida KT2440 1044856 NP_743780.1 CDS rpoS NC_002947.3 1818752 1819759 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 1818752..1819759 Pseudomonas putida KT2440 1044853 NP_743781.1 CDS PP_1624 NC_002947.3 1820234 1821655 D similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 1820234..1821655 Pseudomonas putida KT2440 1044841 NP_743782.1 CDS PP_1625 NC_002947.3 1822212 1822535 R similar to GP:7243294, GB:M33146, SP:P21291, PID:181064, and PID:181071; identified by sequence similarity; ferrodoxin, 4Fe-4S complement(1822212..1822535) Pseudomonas putida KT2440 1044839 NP_743783.1 CDS mutS NC_002947.3 1822676 1825249 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1822676..1825249) Pseudomonas putida KT2440 1044837 NP_743784.1 CDS PP_1627 NC_002947.3 1825410 1826501 D similar to GP:9946286; identified by sequence similarity; hypothetical protein 1825410..1826501 Pseudomonas putida KT2440 1044836 NP_743785.1 CDS PP_1628 NC_002947.3 1826557 1827039 D similar to SP:P31667, PID:606346, GB:U00096, and PID:1789816; identified by sequence similarity; CinA domain-containing protein 1826557..1827039 Pseudomonas putida KT2440 1044834 NP_743786.1 CDS recA NC_002947.3 1827143 1828210 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1827143..1828210 Pseudomonas putida KT2440 1044818 NP_743787.1 CDS recX NC_002947.3 1828232 1828702 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1828232..1828702 Pseudomonas putida KT2440 1044811 NP_743788.1 CDS PP_1631 NC_002947.3 1828979 1830097 R similar to GP:9949773; identified by sequence similarity; hypothetical protein complement(1828979..1830097) Pseudomonas putida KT2440 1044808 NP_743789.1 CDS PP_1632 NC_002947.3 1830144 1830467 D hypothetical protein 1830144..1830467 Pseudomonas putida KT2440 1044807 NP_743790.1 CDS PP_1633 NC_002947.3 1830482 1830901 R similar to GP:7579037, and GP:9949768; identified by sequence similarity; hypothetical protein complement(1830482..1830901) Pseudomonas putida KT2440 1044804 NP_743791.1 CDS PP_1634 NC_002947.3 1831118 1831828 D similar to GP:7579038; identified by sequence similarity; DTW domain containing protein 1831118..1831828 Pseudomonas putida KT2440 1044802 NP_743792.1 CDS PP_1635 NC_002947.3 1832008 1832658 D similar to GP:7579039, and GP:7579039; identified by sequence similarity; LuxR family transcriptional regulator 1832008..1832658 Pseudomonas putida KT2440 1044800 NP_743793.1 CDS dgkA-1 NC_002947.3 1832732 1833097 D similar to GP:7579040, and GP:9949759; identified by sequence similarity; diacylglycerol kinase 1832732..1833097 Pseudomonas putida KT2440 1044799 NP_743794.1 CDS PP_1637 NC_002947.3 1833094 1834020 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(1833094..1834020) Pseudomonas putida KT2440 1044797 NP_743795.1 CDS fpr NC_002947.3 1834138 1834917 D similar to SP:Q44532, GB:Z19054, SP:P35222, PID:38520, and PID:860988; identified by sequence similarity; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1834138..1834917 Pseudomonas putida KT2440 1044791 NP_743796.1 CDS PP_1639 NC_002947.3 1835060 1835554 R similar to GB:L16896, GB:M20677, SP:P10074, PID:1177229, PID:1177230, and PID:292935; identified by sequence similarity; hypothetical protein complement(1835060..1835554) Pseudomonas putida KT2440 1044790 NP_743797.1 CDS PP_1640 NC_002947.3 1835686 1836285 R identified by match to PFAM protein family HMM PF03626; hypothetical protein complement(1835686..1836285) Pseudomonas putida KT2440 1044788 NP_743798.1 CDS PP_1641 NC_002947.3 1836549 1837373 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1836549..1837373 Pseudomonas putida KT2440 1044776 NP_743799.1 CDS PP_1642 NC_002947.3 1837378 1838049 D identified by match to PFAM protein family HMM PF03352; hypothetical protein 1837378..1838049 Pseudomonas putida KT2440 1044775 NP_743800.1 CDS PP_1643 NC_002947.3 1838153 1838566 R hypothetical protein complement(1838153..1838566) Pseudomonas putida KT2440 1044771 NP_743801.1 CDS wrbA NC_002947.3 1838559 1839164 R similar to GP:9946855, and GP:9946855; identified by sequence similarity; trp repressor binding protein complement(1838559..1839164) Pseudomonas putida KT2440 1044763 NP_743802.1 CDS arsC-1 NC_002947.3 1839161 1839514 R similar to GP:9946856, and SP:P08692; identified by sequence similarity; arsenate reductase complement(1839161..1839514) Pseudomonas putida KT2440 1044757 NP_743803.1 CDS PP_1646 NC_002947.3 1839600 1840064 D identified by match to PFAM protein family HMM PF00085; alkyl hydroperoxide reductase 1839600..1840064 Pseudomonas putida KT2440 1044754 NP_743804.1 CDS PP_1647 NC_002947.3 1840100 1840531 R similar to GP:9946829; identified by sequence similarity; hypothetical protein complement(1840100..1840531) Pseudomonas putida KT2440 1044750 NP_743805.1 CDS PP_1648 NC_002947.3 1840501 1840938 R hypothetical protein complement(1840501..1840938) Pseudomonas putida KT2440 1044742 NP_743806.1 CDS ldhA NC_002947.3 1840970 1841998 R Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase complement(1840970..1841998) Pseudomonas putida KT2440 1044740 NP_743807.1 CDS gacS NC_002947.3 1842036 1844789 R similar to GP:6273355, and GP:6273355; identified by sequence similarity; multi-sensor hybrid histidine kinase complement(1842036..1844789) Pseudomonas putida KT2440 1044739 NP_743808.1 CDS PP_1651 NC_002947.3 1844884 1845702 D identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator 1844884..1845702 Pseudomonas putida KT2440 1044421 NP_743809.1 CDS PP_1652 NC_002947.3 1845706 1847082 D identified by match to PFAM protein family HMM PF02518; sensor histidine kinase 1845706..1847082 Pseudomonas putida KT2440 1044394 NP_743810.1 CDS PP_1653 NC_002947.3 1847276 1848241 D similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 1847276..1848241 Pseudomonas putida KT2440 1044390 NP_743811.1 CDS cysM NC_002947.3 1848556 1849455 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1848556..1849455 Pseudomonas putida KT2440 1044388 NP_743812.1 CDS rumA NC_002947.3 1849456 1850814 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1849456..1850814 Pseudomonas putida KT2440 1044387 NP_743813.1 CDS relA NC_002947.3 1850911 1853151 D identified by match to PFAM protein family HMM PF02824; (p)ppGpp synthetase I SpoT/RelA 1850911..1853151 Pseudomonas putida KT2440 1044386 NP_743814.1 CDS mazG NC_002947.3 1853275 1854108 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1853275..1854108 Pseudomonas putida KT2440 1044384 NP_743815.1 CDS PP_1658 NC_002947.3 1854135 1854674 D hypothetical protein 1854135..1854674 Pseudomonas putida KT2440 1044383 NP_743816.1 CDS PP_1659 NC_002947.3 1854985 1856325 D similar to GB:M35128, GB:M35128, GB:X15263, GB:X52068, SP:P11229, PID:180535, PID:297406, PID:32318, PID:34451, GB:M35128, GB:M35128, GB:X15263, GB:X52068, SP:P11229, PID:180535, PID:297406, PID:32318, and PID:34451; identified by sequence similarity; hypothetical protein 1854985..1856325 Pseudomonas putida KT2440 1044382 NP_743817.1 CDS PP_1660 NC_002947.3 1856291 1856821 D hypothetical protein 1856291..1856821 Pseudomonas putida KT2440 1044314 NP_743818.1 CDS PP_1661 NC_002947.3 1856818 1859076 D similar to GP:7212801; identified by sequence similarity; dehydrogenase subunit 1856818..1859076 Pseudomonas putida KT2440 1044297 NP_743819.1 CDS PP_1662 NC_002947.3 1859177 1859404 R hypothetical protein complement(1859177..1859404) Pseudomonas putida KT2440 1044265 NP_743820.1 CDS PP_1663 NC_002947.3 1859560 1860270 R similar to GP:9946848; identified by sequence similarity; hypothetical protein complement(1859560..1860270) Pseudomonas putida KT2440 1044251 NP_743821.1 CDS purN NC_002947.3 1860279 1860932 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1860279..1860932) Pseudomonas putida KT2440 1044234 NP_743822.1 CDS purM NC_002947.3 1860932 1861990 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1860932..1861990) Pseudomonas putida KT2440 1044224 NP_743823.1 CDS PP_1666 NC_002947.3 1862311 1863378 D similar to GP:9946852; identified by sequence similarity; hypothetical protein 1862311..1863378 Pseudomonas putida KT2440 1044220 NP_743824.1 CDS PP_1667 NC_002947.3 1863391 1864464 D identified by match to PFAM protein family HMM PF04087; hypothetical protein 1863391..1864464 Pseudomonas putida KT2440 1044215 NP_743825.1 CDS PP_1668 NC_002947.3 1864663 1865370 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1864663..1865370 Pseudomonas putida KT2440 1044214 NP_743826.1 CDS PP_1669 NC_002947.3 1865492 1866136 D identified by match to PFAM protein family HMM PF00877; NLP/P60 protein 1865492..1866136 Pseudomonas putida KT2440 1044211 NP_743827.1 CDS PP_1670 NC_002947.3 1866279 1866812 D identified by match to PFAM protein family HMM PF00877; NLP/P60 protein 1866279..1866812 Pseudomonas putida KT2440 1044207 NP_743828.1 CDS PP_1671 NC_002947.3 1866949 1867116 R hypothetical protein complement(1866949..1867116) Pseudomonas putida KT2440 1044205 NP_743829.1 CDS cobO NC_002947.3 1867275 1867886 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1867275..1867886 Pseudomonas putida KT2440 1044183 NP_743830.1 CDS cobB NC_002947.3 1867883 1869178 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1867883..1869178 Pseudomonas putida KT2440 1044181 NP_743831.1 CDS PP_1674 NC_002947.3 1869175 1869825 D similar to GB:U05040, and PID:460152; identified by sequence similarity; cob(II)yrinic acid a,c-diamide reductase 1869175..1869825 Pseudomonas putida KT2440 1044162 NP_743832.1 CDS cobD NC_002947.3 1869807 1870730 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1869807..1870730 Pseudomonas putida KT2440 1044147 NP_743833.1 CDS cobC NC_002947.3 1870723 1871715 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1870723..1871715 Pseudomonas putida KT2440 1044146 NP_743834.1 CDS cobQ NC_002947.3 1871712 1873166 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1871712..1873166 Pseudomonas putida KT2440 1044077 NP_743835.1 CDS cobU NC_002947.3 1873168 1873689 D catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 1873168..1873689 Pseudomonas putida KT2440 1044040 NP_743836.1 CDS cobT NC_002947.3 1873686 1874741 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1873686..1874741 Pseudomonas putida KT2440 1043997 NP_743837.1 CDS PP_1680 NC_002947.3 1874738 1875304 D similar to GB:L20469, GB:L35902, GB:L35903, GB:U25441, GB:U32499, SP:P35462, PID:579579, PID:806903, and PID:927342; identified by sequence similarity; alpha-ribazole-5'-phosphate phosphatase 1874738..1875304 Pseudomonas putida KT2440 1043958 NP_743838.1 CDS cobS NC_002947.3 1875273 1876028 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1875273..1876028 Pseudomonas putida KT2440 1043916 NP_743839.1 CDS PP_1682 NC_002947.3 1876059 1877363 D identified by match to PFAM protein family HMM PF00150; glycosyl hydrolase 1876059..1877363 Pseudomonas putida KT2440 1043896 NP_743840.1 CDS PP_1683 NC_002947.3 1877426 1877830 D identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator 1877426..1877830 Pseudomonas putida KT2440 1043874 NP_743841.1 CDS PP_1684 NC_002947.3 1877875 1879095 D identified by match to TIGR protein family HMM TIGR00890; major facilitator superfamily transporter 1877875..1879095 Pseudomonas putida KT2440 1043870 NP_743842.1 CDS PP_1685 NC_002947.3 1879092 1879214 D hypothetical protein 1879092..1879214 Pseudomonas putida KT2440 1043776 NP_743843.1 CDS PP_1686 NC_002947.3 1879204 1879812 D similar to SP:O08368; identified by sequence similarity; glutathione peroxidase 1879204..1879812 Pseudomonas putida KT2440 1043746 NP_743844.1 CDS PP_1687 NC_002947.3 1879948 1880247 R hypothetical protein complement(1879948..1880247) Pseudomonas putida KT2440 1043744 NP_743845.1 CDS PP_1688 NC_002947.3 1880323 1881252 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 1880323..1881252 Pseudomonas putida KT2440 1043743 NP_743846.1 CDS PP_1689 NC_002947.3 1881294 1882559 R similar to SP:P10384; identified by sequence similarity; aromatic hydrocarbon degradation protein complement(1881294..1882559) Pseudomonas putida KT2440 1043739 NP_743847.1 CDS PP_1690 NC_002947.3 1882707 1883189 R similar to GP:9947224, and GP:9947224; identified by sequence similarity; hypothetical protein complement(1882707..1883189) Pseudomonas putida KT2440 1043738 NP_743848.1 CDS PP_1691 NC_002947.3 1883439 1883663 R similar to GP:9946697; identified by sequence similarity; hypothetical protein complement(1883439..1883663) Pseudomonas putida KT2440 1043737 NP_743849.1 CDS PP_1692 NC_002947.3 1884609 1885034 D Sel1 domain-containing protein repeat-containing protein 1884609..1885034 Pseudomonas putida KT2440 1043731 NP_743850.1 CDS PP_1693 NC_002947.3 1885106 1885300 R hypothetical protein complement(1885106..1885300) Pseudomonas putida KT2440 1043727 NP_743851.1 CDS PP_1694 NC_002947.3 1885331 1886818 D identified by match to PFAM protein family HMM PF02646; hypothetical protein 1885331..1886818 Pseudomonas putida KT2440 1043719 NP_743852.1 CDS PP_1695 NC_002947.3 1886790 1890269 R identified by match to PFAM protein family HMM PF03601; integral membrane sensor hybrid histidine kinase complement(1886790..1890269) Pseudomonas putida KT2440 1043697 NP_743853.1 CDS PP_1696 NC_002947.3 1890396 1891574 R similar to GB:L09234, SP:P38607, and PID:291866; identified by sequence similarity; major facilitator superfamily protein complement(1890396..1891574) Pseudomonas putida KT2440 1043689 NP_743854.1 CDS PP_1697 NC_002947.3 1891561 1892487 D similar to GP:8546897; identified by sequence similarity; GntR family transcriptional regulator 1891561..1892487 Pseudomonas putida KT2440 1043663 NP_743855.1 CDS PP_1698 NC_002947.3 1892582 1893856 D identified by match to PFAM protein family HMM PF00083; major facilitator family transporter 1892582..1893856 Pseudomonas putida KT2440 1043660 NP_743856.1 CDS PP_1699 NC_002947.3 1893872 1894714 D similar to GP:3738249; identified by sequence similarity; amidohydrolase 1893872..1894714 Pseudomonas putida KT2440 1043651 NP_743857.1 CDS PP_1700 NC_002947.3 1894764 1896749 D identified by match to PFAM protein family HMM PF04241; phospholipid/glycerol acyltransferase 1894764..1896749 Pseudomonas putida KT2440 1043643 NP_743858.1 CDS sugE NC_002947.3 1896753 1897070 R identified by match to PFAM protein family HMM PF00893; small multidrug resistance protein complement(1896753..1897070) Pseudomonas putida KT2440 1043639 NP_743859.1 CDS rdgC NC_002947.3 1897288 1898208 R Required for efficient pilin antigenic variation; recombination associated protein complement(1897288..1898208) Pseudomonas putida KT2440 1043631 NP_743860.1 CDS PP_1703 NC_002947.3 1899399 1903472 D similar to GP:8347220, and GP:8347220; identified by sequence similarity; molybdopterin oxidoreductase 1899399..1903472 Pseudomonas putida KT2440 1043630 NP_743861.1 CDS PP_1704 NC_002947.3 1903494 1903619 D hypothetical protein 1903494..1903619 Pseudomonas putida KT2440 1043627 NP_743862.1 CDS nirB NC_002947.3 1903743 1906295 D similar to GB:M94539, SP:Q01064, PID:179891, GB:M95623, GB:X04217, GB:X04808, GB:D10608, GB:D12722, SP:P08397, PID:292385, PID:292386, PID:35305, PID:35307, and PID:35309; identified by sequence similarity; nitrite reductase (NAD(P)H) large subunit 1903743..1906295 Pseudomonas putida KT2440 1043623 NP_743863.1 CDS nirD NC_002947.3 1906295 1906657 D similar to GB:M94539, SP:Q01064, PID:179891, GB:L20469, GB:L35902, GB:L35903, GB:U25441, GB:U32499, SP:P35462, PID:579579, PID:806903, and PID:927342; identified by sequence similarity; nitrite reductase (NAD(P)H) small subunit 1906295..1906657 Pseudomonas putida KT2440 1043622 NP_743864.1 CDS PP_1707 NC_002947.3 1906785 1907735 R similar to GP:6453875; identified by sequence similarity; D-isomer specific 2-hydroxyacid dehydrogenase complement(1906785..1907735) Pseudomonas putida KT2440 1043609 NP_743865.1 CDS PP_1708 NC_002947.3 1907760 1908518 R similar to GP:6469272; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase complement(1907760..1908518) Pseudomonas putida KT2440 1043603 NP_743866.1 CDS PP_1709 NC_002947.3 1908537 1909247 R identified by match to PFAM protein family HMM PF01557; fumarylacetoacetate hydrolase complement(1908537..1909247) Pseudomonas putida KT2440 1043601 NP_743867.1 CDS PP_1710 NC_002947.3 1909468 1910808 R similar to GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, GB:Z14228, GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, and GB:Z14228; identified by sequence similarity; major facilitator superfamily transporter phthalate permease complement(1909468..1910808) Pseudomonas putida KT2440 1043595 NP_743868.1 CDS PP_1711 NC_002947.3 1911104 1912033 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 1911104..1912033 Pseudomonas putida KT2440 1043589 NP_743869.1 CDS PP_1712 NC_002947.3 1912059 1913468 R hypothetical protein complement(1912059..1913468) Pseudomonas putida KT2440 1043521 NP_743870.1 CDS pcaQ NC_002947.3 1913631 1914563 D similar to GP:10442737, and GP:10442737; identified by sequence similarity; LysR family transcriptional regulator 1913631..1914563 Pseudomonas putida KT2440 1043499 NP_743871.1 CDS fklB-2 NC_002947.3 1914817 1915569 D similar to SP:P39311; identified by sequence similarity; FKBP-type peptidylprolyl isomerase 1914817..1915569 Pseudomonas putida KT2440 1043498 NP_743872.1 CDS PP_1715 NC_002947.3 1915858 1916295 D hypothetical protein 1915858..1916295 Pseudomonas putida KT2440 1043474 NP_743873.1 CDS PP_1716 NC_002947.3 1916410 1916748 D identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 1916410..1916748 Pseudomonas putida KT2440 1043470 NP_743874.1 CDS PP_1717 NC_002947.3 1916745 1917113 D hypothetical protein 1916745..1917113 Pseudomonas putida KT2440 1043464 NP_743875.1 CDS PP_1718 NC_002947.3 1917139 1918278 R identified by match to PFAM protein family HMM PF00563; diguanylate phosphodiesterase complement(1917139..1918278) Pseudomonas putida KT2440 1043461 NP_743876.1 CDS prc NC_002947.3 1918339 1920453 R similar to GB:M26061, SP:P16499, and PID:2366987; identified by sequence similarity; carboxyl-terminal protease complement(1918339..1920453) Pseudomonas putida KT2440 1043459 NP_743877.1 CDS PP_1720 NC_002947.3 1920560 1921522 D identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 1920560..1921522 Pseudomonas putida KT2440 1043458 NP_743878.1 CDS PP_1721 NC_002947.3 1921583 1922236 R identified by match to TIGR protein family HMM TIGR01488; HAD superfamily hydrolase complement(1921583..1922236) Pseudomonas putida KT2440 1043457 NP_743879.1 CDS PP_1722 NC_002947.3 1922251 1923240 R identified by match to TIGR protein family HMM TIGR00968; ABC transporter ATP-binding protein complement(1922251..1923240) Pseudomonas putida KT2440 1043456 NP_743880.1 CDS PP_1723 NC_002947.3 1923242 1924036 R identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein complement(1923242..1924036) Pseudomonas putida KT2440 1043455 NP_743881.1 CDS PP_1724 NC_002947.3 1924026 1924865 R identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein complement(1924026..1924865) Pseudomonas putida KT2440 1043454 NP_743882.1 CDS PP_1725 NC_002947.3 1924862 1925698 R type I phosphodiesterase/nucleotide pyrophosphatase complement(1924862..1925698) Pseudomonas putida KT2440 1043452 NP_743883.1 CDS PP_1726 NC_002947.3 1925798 1926862 R identified by match to TIGR protein family HMM TIGR00971; ABC transporter substrate-binding protein complement(1925798..1926862) Pseudomonas putida KT2440 1043451 NP_743884.1 CDS PP_1727 NC_002947.3 1927190 1927903 D identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 1927190..1927903 Pseudomonas putida KT2440 1043450 NP_743885.1 CDS PP_1728 NC_002947.3 1927935 1930088 R similar to GP:9951419; identified by sequence similarity; hypothetical protein complement(1927935..1930088) Pseudomonas putida KT2440 1043449 NP_743886.1 CDS PP_1729 NC_002947.3 1930127 1930330 R hypothetical protein complement(1930127..1930330) Pseudomonas putida KT2440 1043448 NP_743887.1 CDS PP_1730 NC_002947.3 1930435 1931724 R catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase complement(1930435..1931724) Pseudomonas putida KT2440 1043447 NP_743888.1 CDS minE NC_002947.3 1932680 1932934 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1932680..1932934) Pseudomonas putida KT2440 1043445 NP_743889.1 CDS minD NC_002947.3 1932938 1933750 R similar to SP:P18197; identified by sequence similarity; septum site-determining protein MinD complement(1932938..1933750) Pseudomonas putida KT2440 1043444 NP_743890.1 CDS minC NC_002947.3 1933860 1934687 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1933860..1934687) Pseudomonas putida KT2440 1043443 NP_743891.1 CDS htrB NC_002947.3 1934733 1935668 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1934733..1935668 Pseudomonas putida KT2440 1043442 NP_743892.1 CDS PP_1736 NC_002947.3 1935696 1936844 D similar to GP:9949364; identified by sequence similarity; patatin 1935696..1936844 Pseudomonas putida KT2440 1043441 NP_743893.1 CDS PP_1737 NC_002947.3 1936934 1937680 R VacJ family lipoprotein complement(1936934..1937680) Pseudomonas putida KT2440 1043440 NP_743894.1 CDS PP_1738 NC_002947.3 1937754 1939052 R similar to GP:9949360; identified by sequence similarity; hypothetical protein complement(1937754..1939052) Pseudomonas putida KT2440 1043438 NP_743895.1 CDS PP_1739 NC_002947.3 1939231 1939608 D hypothetical protein 1939231..1939608 Pseudomonas putida KT2440 1043437 NP_743896.1 CDS PP_1740 NC_002947.3 1939696 1941273 R similar to GB:X78533, PID:468815, GB:X78533, and PID:468815; identified by sequence similarity; beta (1-6) glucans synthase complement(1939696..1941273) Pseudomonas putida KT2440 1043436 NP_743897.1 CDS PP_1741 NC_002947.3 1941456 1942319 D identified by match to PFAM protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein 1941456..1942319 Pseudomonas putida KT2440 1043435 NP_743898.1 CDS PP_1742 NC_002947.3 1942524 1942835 D similar to GP:9949357; identified by sequence similarity; hypothetical protein 1942524..1942835 Pseudomonas putida KT2440 1043433 NP_743899.1 CDS actP NC_002947.3 1942832 1944496 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1942832..1944496 Pseudomonas putida KT2440 1043431 NP_743900.1 CDS PP_1744 NC_002947.3 1944758 1944910 R hypothetical protein complement(1944758..1944910) Pseudomonas putida KT2440 1043429 NP_743901.1 CDS PP_1745 NC_002947.3 1945117 1945926 D identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase 1945117..1945926 Pseudomonas putida KT2440 1043428 NP_743902.1 CDS PP_1746 NC_002947.3 1946047 1946226 D similar to GB:J03071, GB:A00501, GB:V00519, GB:M13438, GB:V00520, GB:J00148, GB:A12770, GB:A15072, GB:M14398, SP:P01241, SP:P01243, PID:183147, PID:183159, PID:490144, and PID:512406; identified by sequence similarity; carbon storage regulator CsrA 1946047..1946226 Pseudomonas putida KT2440 1043426 NP_743903.1 CDS PP_1747 NC_002947.3 1946241 1946468 R similar to GP:9949606; identified by sequence similarity; hypothetical protein complement(1946241..1946468) Pseudomonas putida KT2440 1043425 NP_743904.1 CDS PP_1748 NC_002947.3 1946552 1947736 R hypothetical protein complement(1946552..1947736) Pseudomonas putida KT2440 1043424 NP_743905.1 CDS PP_1749 NC_002947.3 1947906 1949651 R identified by match to TIGR protein family HMM TIGR01575; acetyltransferase complement(1947906..1949651) Pseudomonas putida KT2440 1043423 NP_743906.1 CDS asnB NC_002947.3 1949655 1951442 R similar to GP:9949601, GB:U04815, GB:U04818, GB:U04824, GB:U04816, GB:U04817, SP:P21127, PID:189481, PID:507158, PID:507160, PID:507162, PID:507164, PID:507166, PID:507168, PID:507427, and PID:507429; identified by sequence similarity; asparagine synthetase complement(1949655..1951442) Pseudomonas putida KT2440 1043422 NP_743907.1 CDS mnmC NC_002947.3 1951573 1953537 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1951573..1953537) Pseudomonas putida KT2440 1043421 NP_743908.1 CDS PP_1752 NC_002947.3 1953674 1955167 D similar to GP:9949597; identified by sequence similarity; hypothetical protein 1953674..1955167 Pseudomonas putida KT2440 1043418 NP_743909.1 CDS PP_1753 NC_002947.3 1955360 1956334 D similar to GB:L04572, SP:P28689, GB:L05381, PID:145787, PID:146393, GB:U00096, PID:1736484, and PID:1788147; identified by sequence similarity; hypothetical protein 1955360..1956334 Pseudomonas putida KT2440 1043417 NP_743910.1 CDS PP_1754 NC_002947.3 1956409 1957569 D similar to GP:15021212; identified by sequence similarity; hypothetical protein 1956409..1957569 Pseudomonas putida KT2440 1043416 NP_743911.1 CDS fumC-2 NC_002947.3 1957666 1959060 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1957666..1959060) Pseudomonas putida KT2440 1043414 NP_743912.1 CDS PP_1756 NC_002947.3 1959215 1959739 D similar to GP:5139534, and GP:5139534; identified by sequence similarity; hypothetical protein 1959215..1959739 Pseudomonas putida KT2440 1043412 NP_743913.1 CDS bolA NC_002947.3 1959750 1960046 D similar to GP:5139535, and SP:P15298; identified by sequence similarity; BolA family protein 1959750..1960046 Pseudomonas putida KT2440 1043410 NP_743914.1 CDS PP_1758 NC_002947.3 1960174 1961106 D identified by match to PFAM protein family HMM PF00581; hypothetical protein 1960174..1961106 Pseudomonas putida KT2440 1043407 NP_743915.1 CDS PP_1759 NC_002947.3 1961143 1961742 D similar to GP:9946756; identified by sequence similarity; DSBA oxidoreductase 1961143..1961742 Pseudomonas putida KT2440 1043384 NP_743916.1 CDS PP_1760 NC_002947.3 1961735 1963567 D identified by match to PFAM protein family HMM PF04229; ABC transporter ATP-binding protein 1961735..1963567 Pseudomonas putida KT2440 1043379 NP_743917.1 CDS PP_1761 NC_002947.3 1963390 1966311 D identified by match to PFAM protein family HMM PF00563; sensory box protein/GGDEF family protein 1963390..1966311 Pseudomonas putida KT2440 1043374 NP_743918.1 CDS PP_1762 NC_002947.3 1966342 1967127 D hypothetical protein 1966342..1967127 Pseudomonas putida KT2440 1043365 NP_743919.1 CDS PP_1763 NC_002947.3 1967246 1967986 R identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase complement(1967246..1967986) Pseudomonas putida KT2440 1043364 NP_743920.1 CDS PP_1764 NC_002947.3 1968144 1968815 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(1968144..1968815) Pseudomonas putida KT2440 1043363 NP_743921.1 CDS ubiG NC_002947.3 1968818 1969516 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1968818..1969516) Pseudomonas putida KT2440 1043362 NP_743922.1 CDS mtnA NC_002947.3 1969627 1970703 D isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1969627..1970703 Pseudomonas putida KT2440 1043360 NP_743923.1 CDS gyrA NC_002947.3 1971069 1973840 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1971069..1973840 Pseudomonas putida KT2440 1043356 NP_743924.1 CDS serC NC_002947.3 1973988 1975073 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1973988..1975073 Pseudomonas putida KT2440 1043354 NP_743925.1 CDS pheA NC_002947.3 1975066 1976169 D identified by match to PFAM protein family HMM PF01817; chorismate mutase 1975066..1976169 Pseudomonas putida KT2440 1043353 NP_743926.1 CDS PP_1770 NC_002947.3 1976334 1978574 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 1976334..1978574 Pseudomonas putida KT2440 1043352 NP_743927.1 CDS cmk NC_002947.3 1978571 1979257 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1978571..1979257 Pseudomonas putida KT2440 1043351 NP_743928.2 CDS rpsA NC_002947.3 1979382 1981058 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1979382..1981058 Pseudomonas putida KT2440 1043348 NP_743929.1 CDS ihfB NC_002947.3 1981358 1981660 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1981358..1981660 Pseudomonas putida KT2440 1043345 NP_743930.1 CDS PP_1774 NC_002947.3 1981629 1981943 D hypothetical protein 1981629..1981943 Pseudomonas putida KT2440 1043344 NP_743931.1 CDS PP_1775 NC_002947.3 1982046 1983479 D similar to GP:3724326; identified by sequence similarity; beta-lactamase domain-containing protein 1982046..1983479 Pseudomonas putida KT2440 1043342 NP_743932.1 CDS PP_1776 NC_002947.3 1983807 1985249 D identified by match to PFAM protein family HMM PF01050; mannose-6-phosphate isomerase 1983807..1985249 Pseudomonas putida KT2440 1043340 NP_743933.1 CDS xanA NC_002947.3 1985379 1986740 D similar to GB:V00510, GB:J00123, GB:V00509, SP:P01210, PID:182099, and PID:31151; identified by sequence similarity; phosphomannomutase 1985379..1986740 Pseudomonas putida KT2440 1043339 NP_743934.1 CDS PP_1778 NC_002947.3 1986743 1987537 D similar to GB:M33819; identified by sequence similarity; lipopolysaccharide ABC export system, permease 1986743..1987537 Pseudomonas putida KT2440 1043335 NP_743935.1 CDS PP_1779 NC_002947.3 1987534 1988751 D similar to GP:3142212, and GB:X53695; identified by sequence similarity; lipopolysaccharide ABC export system, ATP-binding protein 1987534..1988751 Pseudomonas putida KT2440 1043334 NP_743936.1 CDS PP_1780 NC_002947.3 1988652 1993559 D similar to GP:7209347; identified by sequence similarity; mannosyltransferase 1988652..1993559 Pseudomonas putida KT2440 1043327 NP_743937.1 CDS PP_1781 NC_002947.3 1993657 1994745 R similar to GP:6759588, GB:J05252, SP:P16519, PID:189131, and PID:189652; identified by sequence similarity; O-acyltransferase complement(1993657..1994745) Pseudomonas putida KT2440 1043326 NP_743938.1 CDS rmlC NC_002947.3 1996036 1996584 R similar to GP:3832508; identified by sequence similarity; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1996036..1996584) Pseudomonas putida KT2440 1043325 NP_743939.1 CDS rmlA NC_002947.3 1996584 1997465 R similar to GB:D90276, and PID:219539; identified by sequence similarity; glucose-1-phosphate thymidylyltransferase complement(1996584..1997465) Pseudomonas putida KT2440 1043324 NP_743940.1 CDS rmlD NC_002947.3 1997477 1998379 R identified by match to TIGR protein family HMM TIGR01746; dTDP-4-dehydrorhamnose reductase complement(1997477..1998379) Pseudomonas putida KT2440 1043323 NP_743941.1 CDS rmlB NC_002947.3 1998376 1999476 R identified by match to TIGR protein family HMM TIGR01746; dTDP-glucose 4,6-dehydratase complement(1998376..1999476) Pseudomonas putida KT2440 1043322 NP_743942.1 CDS PP_1786 NC_002947.3 2000057 2003500 D identified by match to PFAM protein family HMM PF03693; glycosyl transferase family protein 2000057..2003500 Pseudomonas putida KT2440 1043320 NP_743943.1 CDS PP_1787 NC_002947.3 2003497 2004507 D hypothetical protein 2003497..2004507 Pseudomonas putida KT2440 1043317 NP_743944.1 CDS PP_1788 NC_002947.3 2004657 2005736 R hypothetical protein complement(2004657..2005736) Pseudomonas putida KT2440 1043316 NP_743945.1 CDS PP_1789 NC_002947.3 2005983 2006666 R identified by match to TIGR protein family HMM TIGR01454; HAD superfamily hydrolase complement(2005983..2006666) Pseudomonas putida KT2440 1043315 NP_743946.1 CDS PP_1790 NC_002947.3 2006663 2007358 R identified by match to PFAM protein family HMM PF02348; acylneuraminate cytidylyltransferase complement(2006663..2007358) Pseudomonas putida KT2440 1043314 NP_743947.1 CDS PP_1791 NC_002947.3 2007355 2008959 R similar to GB:U09063, and PID:483868; identified by sequence similarity; aldolase complement(2007355..2008959) Pseudomonas putida KT2440 1043312 NP_743948.1 CDS PP_1792 NC_002947.3 2009001 2011430 R identified by match to PFAM protein family HMM PF03490; glycosyl transferase family protein complement(2009001..2011430) Pseudomonas putida KT2440 1043311 NP_743949.1 CDS PP_1793 NC_002947.3 2011430 2014018 R identified by match to TIGR protein family HMM TIGR01556; glycosyl transferase family protein complement(2011430..2014018) Pseudomonas putida KT2440 1043310 NP_743950.1 CDS PP_1794 NC_002947.3 2014042 2015484 R identified by match to PFAM protein family HMM PF00427; hypothetical protein complement(2014042..2015484) Pseudomonas putida KT2440 1043309 NP_743951.1 CDS PP_1795 NC_002947.3 2015502 2016389 R hypothetical protein complement(2015502..2016389) Pseudomonas putida KT2440 1043308 NP_743952.1 CDS PP_1797 NC_002947.3 2018723 2020048 D similar to GP:4009448; identified by sequence similarity; HlyD family secretion protein 2018723..2020048 Pseudomonas putida KT2440 1043306 NP_743953.1 CDS PP_1798 NC_002947.3 2020045 2021460 D identified by match to PFAM protein family HMM PF02321; outer membrane efflux protein 2020045..2021460 Pseudomonas putida KT2440 1043305 NP_743954.1 CDS gmd NC_002947.3 2021899 2022966 D similar to GP:14090400; identified by sequence similarity; GDP-mannose 4,6-dehydratase 2021899..2022966 Pseudomonas putida KT2440 1043304 NP_743955.1 CDS rmd NC_002947.3 2022966 2023862 D identified by match to TIGR protein family HMM TIGR01746; oxidoreductase Rmd 2022966..2023862 Pseudomonas putida KT2440 1043303 NP_743956.1 CDS wbpY NC_002947.3 2023859 2025001 D similar to GP:6137218; identified by sequence similarity; glycosyl transferase WbpY 2023859..2025001 Pseudomonas putida KT2440 1043302 NP_743957.1 CDS wbpZ NC_002947.3 2024893 2026107 D identified by match to PFAM protein family HMM PF00534; glycosyl transferase WbpZ 2024893..2026107 Pseudomonas putida KT2440 1043301 NP_743958.1 CDS wbpV NC_002947.3 2026240 2027211 D similar to GP:6690124, and GP:6690124; identified by sequence similarity; UDP-sugar epimerase 2026240..2027211 Pseudomonas putida KT2440 1043299 NP_743959.1 CDS wbpL NC_002947.3 2027208 2028212 D similar to GP:10119921; identified by sequence similarity; glycosyl transferase WbpL 2027208..2028212 Pseudomonas putida KT2440 1043298 NP_743960.1 CDS wbpM NC_002947.3 2028258 2030324 D similar to GP:9949255, and GP:6690122; identified by sequence similarity; polysaccharide biosynthesis protein CapD 2028258..2030324 Pseudomonas putida KT2440 1043297 NP_743961.1 CDS PP_1806 NC_002947.3 2030371 2031324 D similar to GB:M80254, SP:P30405, and PID:181274; identified by sequence similarity; KpsF/GutQ family protein 2030371..2031324 Pseudomonas putida KT2440 1043296 NP_743962.1 CDS kdsA-2 NC_002947.3 2031399 2032241 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2031399..2032241) Pseudomonas putida KT2440 1043295 NP_743963.1 CDS pgi NC_002947.3 2032517 2034181 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2032517..2034181 Pseudomonas putida KT2440 1043294 NP_743964.1 CDS PP_1809 NC_002947.3 2035254 2035358 D hypothetical protein 2035254..2035358 Pseudomonas putida KT2440 1043293 NP_743965.1 CDS PP_1810 NC_002947.3 2036663 2037403 D hypothetical protein 2036663..2037403 Pseudomonas putida KT2440 1043292 NP_743966.1 CDS wecB NC_002947.3 2038334 2039476 R similar to SP:P27828; identified by sequence similarity; UDP-N-acetylglucosamine 2-epimerase complement(2038334..2039476) Pseudomonas putida KT2440 1043291 NP_743967.1 CDS PP_1812 NC_002947.3 2039598 2039798 R hypothetical protein complement(2039598..2039798) Pseudomonas putida KT2440 1043289 NP_743968.1 CDS PP_1813 NC_002947.3 2039896 2040234 D identified by match to TIGR protein family HMM TIGR01259; competence protein ComEA 2039896..2040234 Pseudomonas putida KT2440 1043288 NP_743969.1 CDS PP_1814 NC_002947.3 2040271 2040438 R similar to GP:9948973, and GP:9948973; identified by sequence similarity; hypothetical protein complement(2040271..2040438) Pseudomonas putida KT2440 1043287 NP_743970.1 CDS pyrF NC_002947.3 2040622 2041323 D OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2040622..2041323 Pseudomonas putida KT2440 1043286 NP_743971.1 CDS PP_1816 NC_002947.3 2041551 2042552 R identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase complement(2041551..2042552) Pseudomonas putida KT2440 1043285 NP_743972.1 CDS PP_1817 NC_002947.3 2042730 2043491 D identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase 2042730..2043491 Pseudomonas putida KT2440 1043284 NP_743973.1 CDS PP_1818 NC_002947.3 2043635 2044378 R hypothetical protein complement(2043635..2044378) Pseudomonas putida KT2440 1043283 NP_743974.1 CDS PP_1819 NC_002947.3 2044784 2046724 D identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 2044784..2046724 Pseudomonas putida KT2440 1043282 NP_743975.1 CDS PP_1820 NC_002947.3 2046821 2048017 R identified by match to TIGR protein family HMM TIGR00843; benzoate transporter complement(2046821..2048017) Pseudomonas putida KT2440 1043281 NP_743976.1 CDS PP_1821 NC_002947.3 2048156 2048758 D identified by match to PFAM protein family HMM PF00043; glutathione S-transferase 2048156..2048758 Pseudomonas putida KT2440 1043280 NP_743977.1 CDS PP_1822 NC_002947.3 2048897 2049268 R identified by match to PFAM protein family HMM PF02798; glutaredoxin complement(2048897..2049268) Pseudomonas putida KT2440 1043279 NP_743978.1 CDS folE NC_002947.3 2049328 2049900 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2049328..2049900) Pseudomonas putida KT2440 1043278 NP_743979.1 CDS PP_1824 NC_002947.3 2049944 2050504 R identified by match to PFAM protein family HMM PF01713; Smr domain-containing protein complement(2049944..2050504) Pseudomonas putida KT2440 1043277 NP_743980.1 CDS PP_1825 NC_002947.3 2050679 2050999 R similar to GP:9947648, and GP:9947648; identified by sequence similarity; hypothetical protein complement(2050679..2050999) Pseudomonas putida KT2440 1043276 NP_743981.1 CDS PP_1826 NC_002947.3 2051085 2051675 R similar to GP:8250600; identified by sequence similarity; isochorismatase superfamily hydrolase complement(2051085..2051675) Pseudomonas putida KT2440 1043275 NP_743982.1 CDS PP_1827 NC_002947.3 2051857 2052765 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2051857..2052765 Pseudomonas putida KT2440 1043274 NP_743983.1 CDS PP_1828 NC_002947.3 2052815 2053597 R hypothetical protein complement(2052815..2053597) Pseudomonas putida KT2440 1043273 NP_743984.1 CDS PP_1829 NC_002947.3 2053663 2054622 R identified by match to PFAM protein family HMM PF00561; alpha/beta hydrolase complement(2053663..2054622) Pseudomonas putida KT2440 1043272 NP_743985.1 CDS aroC NC_002947.3 2054857 2055948 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2054857..2055948 Pseudomonas putida KT2440 1043271 NP_743986.1 CDS PP_1831 NC_002947.3 2056091 2057245 D similar to GP:9947654; identified by sequence similarity; major facilitator superfamily protein 2056091..2057245 Pseudomonas putida KT2440 1043270 NP_743987.1 CDS PP_1832 NC_002947.3 2057245 2057781 D identified by match to PFAM protein family HMM PF03079; oxidase 2057245..2057781 Pseudomonas putida KT2440 1043269 NP_743988.1 CDS PP_1833 NC_002947.3 2057909 2058211 R similar to GP:9948826, and GP:9948826; identified by sequence similarity; hypothetical protein complement(2057909..2058211) Pseudomonas putida KT2440 1043268 NP_743989.1 CDS PP_1834 NC_002947.3 2058448 2058972 D identified by match to PFAM protein family HMM PF00023; ankyrin domain-containing protein 2058448..2058972 Pseudomonas putida KT2440 1043267 NP_743990.1 CDS PP_1835 NC_002947.3 2059033 2059563 D hypothetical protein 2059033..2059563 Pseudomonas putida KT2440 1043266 NP_743991.1 CDS PP_1836 NC_002947.3 2059687 2060439 R similar to GB:J04809, SP:P00568, and PID:178322; identified by sequence similarity; hypothetical protein complement(2059687..2060439) Pseudomonas putida KT2440 1043265 NP_743992.1 CDS PP_1837 NC_002947.3 2060752 2060943 D hypothetical protein 2060752..2060943 Pseudomonas putida KT2440 1043264 NP_743993.1 CDS PP_1838 NC_002947.3 2061083 2063140 D identified by match to PFAM protein family HMM PF04185; hypothetical protein 2061083..2063140 Pseudomonas putida KT2440 1043263 NP_743994.1 CDS PP_1839 NC_002947.3 2063191 2063583 D hypothetical protein 2063191..2063583 Pseudomonas putida KT2440 1043262 NP_743995.1 CDS PP_1840 NC_002947.3 2063761 2064093 D similar to GP:9947704; identified by sequence similarity; hypothetical protein 2063761..2064093 Pseudomonas putida KT2440 1043261 NP_743996.1 CDS PP_1841 NC_002947.3 2064194 2064994 R identified by match to PFAM protein family HMM PF00034; cytochrome c family protein complement(2064194..2064994) Pseudomonas putida KT2440 1043260 NP_743997.1 CDS PP_1842 NC_002947.3 2065524 2066258 D identified by match to TIGR protein family HMM TIGR00888; amidotransferase 2065524..2066258 Pseudomonas putida KT2440 1043259 NP_743998.1 CDS PP_1843 NC_002947.3 2066299 2067270 R identified by match to TIGR protein family HMM TIGR00383; Mg2+/Co2+ transporter complement(2066299..2067270) Pseudomonas putida KT2440 1043258 NP_743999.1 CDS plsC NC_002947.3 2067339 2068052 R similar to GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, PID:339920, GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, and PID:339920; identified by sequence similarity; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(2067339..2068052) Pseudomonas putida KT2440 1043257 NP_744000.1 CDS PP_1845 NC_002947.3 2068173 2068862 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2068173..2068862) Pseudomonas putida KT2440 1043256 NP_744001.1 CDS PP_1846 NC_002947.3 2069624 2071045 D similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase 2069624..2071045 Pseudomonas putida KT2440 1043255 NP_744002.1 CDS PP_1847 NC_002947.3 2071272 2073461 R similar to GB:U10528, PID:505694, and SP:P50185; identified by sequence similarity; TonB-dependent siderophore receptor complement(2071272..2073461) Pseudomonas putida KT2440 1043254 NP_744003.1 CDS PP_1848 NC_002947.3 2073464 2073577 R hypothetical protein complement(2073464..2073577) Pseudomonas putida KT2440 1043253 NP_744004.1 CDS PP_1849 NC_002947.3 2073605 2073985 R hypothetical protein complement(2073605..2073985) Pseudomonas putida KT2440 1043252 NP_744005.1 CDS PP_1850 NC_002947.3 2074188 2075375 R similar to SP:P31127, GB:U00096, and PID:1787815; identified by sequence similarity; major facilitator superfamily protein complement(2074188..2075375) Pseudomonas putida KT2440 1043249 NP_744006.1 CDS PP_1851 NC_002947.3 2075455 2076405 R hypothetical protein complement(2075455..2076405) Pseudomonas putida KT2440 1043248 NP_744007.1 CDS fabG NC_002947.3 2076406 2077155 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2076406..2077155) Pseudomonas putida KT2440 1043247 NP_744008.1 CDS PP_1853 NC_002947.3 2077274 2078212 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2077274..2078212 Pseudomonas putida KT2440 1043246 NP_744009.1 CDS PP_1854 NC_002947.3 2078327 2078797 R identified by match to TIGR protein family HMM TIGR01462; hypothetical protein complement(2078327..2078797) Pseudomonas putida KT2440 1043245 NP_744010.1 CDS PP_1855 NC_002947.3 2078800 2079198 R hypothetical protein complement(2078800..2079198) Pseudomonas putida KT2440 1043244 NP_744011.1 CDS PP_1856 NC_002947.3 2079177 2079281 R hypothetical protein complement(2079177..2079281) Pseudomonas putida KT2440 1043243 NP_744012.1 CDS PP_1857 NC_002947.3 2079328 2080461 D hypothetical protein 2079328..2080461 Pseudomonas putida KT2440 1043242 NP_744013.1 CDS efp NC_002947.3 2080510 2081079 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2080510..2081079 Pseudomonas putida KT2440 1043241 NP_744014.1 CDS ohr NC_002947.3 2081194 2081622 R similar to SP:O68390; identified by sequence similarity; OsmC family protein complement(2081194..2081622) Pseudomonas putida KT2440 1043240 NP_744015.1 CDS PP_1860 NC_002947.3 2081763 2082218 R similar to GP:9948936; identified by sequence similarity; MarR family transcriptional regulator complement(2081763..2082218) Pseudomonas putida KT2440 1043239 NP_744016.1 CDS PP_1861 NC_002947.3 2082277 2083230 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2082277..2083230) Pseudomonas putida KT2440 1043238 NP_744017.1 CDS PP_1862 NC_002947.3 2083344 2084093 D identified by match to PFAM protein family HMM PF01925; hypothetical protein 2083344..2084093 Pseudomonas putida KT2440 1043237 NP_744018.1 CDS PP_1863 NC_002947.3 2084122 2084973 R similar to GP:9948933; identified by sequence similarity; LysR family transcriptional regulator complement(2084122..2084973) Pseudomonas putida KT2440 1043233 NP_744019.1 CDS PP_1864 NC_002947.3 2085136 2085288 D similar to GP:9948932; identified by sequence similarity; hypothetical protein 2085136..2085288 Pseudomonas putida KT2440 1043232 NP_744020.1 CDS PP_1865 NC_002947.3 2085883 2087184 D identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2085883..2087184 Pseudomonas putida KT2440 1043231 NP_744021.1 CDS PP_1866 NC_002947.3 2088102 2089448 R identified by match to PFAM protein family HMM PF01474; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2088102..2089448) Pseudomonas putida KT2440 1043230 NP_744022.1 CDS PP_1867 NC_002947.3 2089565 2090320 D similar to GP:9948929; identified by sequence similarity; hypothetical protein 2089565..2090320 Pseudomonas putida KT2440 1043229 NP_744023.1 CDS PP_1868 NC_002947.3 2090672 2092351 D identified by match to PFAM protein family HMM PF00271; DEAD/DEAH box helicase 2090672..2092351 Pseudomonas putida KT2440 1043228 NP_744024.1 CDS PP_1869 NC_002947.3 2092442 2093236 R identified by match to PFAM protein family HMM PF02900; hypothetical protein complement(2092442..2093236) Pseudomonas putida KT2440 1043227 NP_744025.1 CDS tpm NC_002947.3 2093311 2093961 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 2093311..2093961 Pseudomonas putida KT2440 1043226 NP_744026.1 CDS htpX NC_002947.3 2094059 2094946 R metalloprotease; heat shock protein HtpX complement(2094059..2094946) Pseudomonas putida KT2440 1043225 NP_744027.1 CDS PP_1872 NC_002947.3 2095263 2096474 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase complement(2095263..2096474) Pseudomonas putida KT2440 1043224 NP_744028.1 CDS PP_1873 NC_002947.3 2096642 2097037 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 2096642..2097037 Pseudomonas putida KT2440 1043223 NP_744029.1 CDS PP_1874 NC_002947.3 2097051 2097539 D similar to GB:M94582, GB:M99412, GB:U11869, GB:U11874, GB:U11872, GB:U11873, GB:U11875, GB:U11876, GB:U11877, GB:U11878, GB:M73969, GB:U11866, GB:U11867, GB:U11868, GB:L19593, SP:P25025, PID:1109691, PID:186378, PID:511803, PID:559054, and PID:576679; identified by sequence similarity; glutathione peroxidase 2097051..2097539 Pseudomonas putida KT2440 1043222 NP_744030.1 CDS PP_1875 NC_002947.3 2097529 2099886 R identified by match to PFAM protein family HMM PF02518; histidine kinase complement(2097529..2099886) Pseudomonas putida KT2440 1043221 NP_744031.1 CDS PP_1876 NC_002947.3 2099932 2100978 D similar to GP:9948908, and GP:9948908; identified by sequence similarity; hypothetical protein 2099932..2100978 Pseudomonas putida KT2440 1043220 NP_744032.1 CDS PP_1877 NC_002947.3 2100979 2101461 D identified by match to PFAM protein family HMM PF01590; GAF domain-containing protein 2100979..2101461 Pseudomonas putida KT2440 1043219 NP_744033.1 CDS PP_1878 NC_002947.3 2101537 2102304 R similar to GP:9948905; identified by sequence similarity; hypothetical protein complement(2101537..2102304) Pseudomonas putida KT2440 1043218 NP_744034.1 CDS PP_1879 NC_002947.3 2103366 2104880 R hypothetical protein complement(2103366..2104880) Pseudomonas putida KT2440 1043216 NP_744035.1 CDS PP_1880 NC_002947.3 2104921 2107113 R identified by match to PFAM protein family HMM PF03797; outer membrane autotransporter complement(2104921..2107113) Pseudomonas putida KT2440 1043215 NP_744036.1 CDS PP_1881 NC_002947.3 2107302 2109326 R hypothetical protein complement(2107302..2109326) Pseudomonas putida KT2440 1043213 NP_744037.1 CDS PP_1882 NC_002947.3 2109384 2114282 R similar to GP:4928251, GB:D00726, SP:P22830, and PID:219656; identified by sequence similarity; hypothetical protein complement(2109384..2114282) Pseudomonas putida KT2440 1043211 NP_744038.1 CDS PP_1883 NC_002947.3 2114376 2116283 D hypothetical protein 2114376..2116283 Pseudomonas putida KT2440 1043209 NP_744039.1 CDS PP_1884 NC_002947.3 2116322 2118787 D hypothetical protein 2116322..2118787 Pseudomonas putida KT2440 1043207 NP_744040.1 CDS PP_1885 NC_002947.3 2118847 2121201 D hypothetical protein 2118847..2121201 Pseudomonas putida KT2440 1043205 NP_744041.1 CDS PP_1886 NC_002947.3 2121170 2124097 D hypothetical protein 2121170..2124097 Pseudomonas putida KT2440 1043204 NP_744042.1 CDS PP_1887 NC_002947.3 2124627 2128499 D identified by match to TIGR protein family HMM TIGR01643; hypothetical protein 2124627..2128499 Pseudomonas putida KT2440 1043203 NP_744043.1 CDS PP_1888 NC_002947.3 2128549 2129643 R similar to SP:P42185; identified by sequence similarity; fimbrial protein complement(2128549..2129643) Pseudomonas putida KT2440 1043202 NP_744044.1 CDS fimD NC_002947.3 2129700 2132195 R identified by match to PFAM protein family HMM PF00577; fimbrial biogenesis outer membrane usher protein complement(2129700..2132195) Pseudomonas putida KT2440 1043196 NP_744045.1 CDS PP_1890 NC_002947.3 2132229 2133008 R identified by match to PFAM protein family HMM PF02753; pili assembly chaperone complement(2132229..2133008) Pseudomonas putida KT2440 1043194 NP_744046.1 CDS fimI NC_002947.3 2133062 2133601 R identified by match to PFAM protein family HMM PF00419; type 1 pili subunit FimI complement(2133062..2133601) Pseudomonas putida KT2440 1043193 NP_744047.1 CDS PP_1892 NC_002947.3 2133821 2134231 R hypothetical protein complement(2133821..2134231) Pseudomonas putida KT2440 1043192 NP_744048.1 CDS fadE NC_002947.3 2134300 2136747 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2134300..2136747) Pseudomonas putida KT2440 1043191 NP_744049.1 CDS PP_1894 NC_002947.3 2137138 2137761 D identified by match to PFAM protein family HMM PF02798; glutathione S-transferase 2137138..2137761 Pseudomonas putida KT2440 1043190 NP_744050.1 CDS PP_1895 NC_002947.3 2137895 2138827 D identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 2137895..2138827 Pseudomonas putida KT2440 1043189 NP_744051.1 CDS PP_1896 NC_002947.3 2138824 2139603 D identified by match to PFAM protein family HMM PF04306; ABC transporter 2138824..2139603 Pseudomonas putida KT2440 1043188 NP_744052.1 CDS PP_1897 NC_002947.3 2140262 2142475 D identified by match to PFAM protein family HMM PF03772; DNA internalization-related competence protein ComEC/Rec2 2140262..2142475 Pseudomonas putida KT2440 1043187 NP_744053.1 CDS PP_1898 NC_002947.3 2142547 2143221 D identified by match to PFAM protein family HMM PF01618; MotA/TolQ/ExbB proton channel 2142547..2143221 Pseudomonas putida KT2440 1043186 NP_744054.1 CDS PP_1899 NC_002947.3 2143218 2143652 D similar to GP:5531414; identified by sequence similarity; biopolymer transport protein ExbD/TolR 2143218..2143652 Pseudomonas putida KT2440 1043184 NP_744055.1 CDS lpxK NC_002947.3 2143649 2144653 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2143649..2144653 Pseudomonas putida KT2440 1043182 NP_744056.1 CDS PP_1901 NC_002947.3 2144698 2144883 D similar to GP:9949079; identified by sequence similarity; hypothetical protein 2144698..2144883 Pseudomonas putida KT2440 1043181 NP_744057.1 CDS kdsB NC_002947.3 2144880 2145644 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2144880..2145644 Pseudomonas putida KT2440 1043180 NP_744058.1 CDS PP_1903 NC_002947.3 2145644 2146108 D identified by match to PFAM protein family HMM PF01451; protein tyrosine phosphatase 2145644..2146108 Pseudomonas putida KT2440 1043179 NP_744059.1 CDS murB NC_002947.3 2146069 2147124 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 2146069..2147124 Pseudomonas putida KT2440 1043178 NP_744060.1 CDS rne NC_002947.3 2147241 2150516 R similar to SP:P21513; identified by sequence similarity; Rne/Rng family ribonuclease complement(2147241..2150516) Pseudomonas putida KT2440 1043177 NP_744061.1 CDS PP_1907 NC_002947.3 2152274 2152948 D similar to GP:9949073; identified by sequence similarity; HAD superfamily hydrolase 2152274..2152948 Pseudomonas putida KT2440 1043175 NP_744062.1 CDS PP_1908 NC_002947.3 2152955 2153944 D identified by match to PFAM protein family HMM PF01343; signal peptide peptidase SppA, 36K type 2152955..2153944 Pseudomonas putida KT2440 1043174 NP_744063.1 CDS maf NC_002947.3 2154154 2154768 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(2154154..2154768) Pseudomonas putida KT2440 1043172 NP_744064.1 CDS PP_1910 NC_002947.3 2154829 2155356 D similar to GP:9949070, and GP:9949070; identified by sequence similarity; hypothetical protein 2154829..2155356 Pseudomonas putida KT2440 1043171 NP_744065.1 CDS rpmF NC_002947.3 2155370 2155552 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2155370..2155552 Pseudomonas putida KT2440 1043168 NP_744066.1 CDS plsX NC_002947.3 2155556 2156566 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2155556..2156566 Pseudomonas putida KT2440 1043165 NP_744067.1 CDS fabD NC_002947.3 2156694 2157632 D similar to SP:P25715; identified by sequence similarity; malonyl CoA-ACP transacylase 2156694..2157632 Pseudomonas putida KT2440 1043164 NP_744068.1 CDS fabG NC_002947.3 2157648 2158388 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2157648..2158388 Pseudomonas putida KT2440 1043163 NP_744069.1 CDS acpP NC_002947.3 2158592 2158828 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2158592..2158828 Pseudomonas putida KT2440 1043162 NP_744070.1 CDS fabF NC_002947.3 2159016 2160260 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2159016..2160260 Pseudomonas putida KT2440 1043161 NP_744071.1 CDS pabC NC_002947.3 2160260 2161075 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2160260..2161075 Pseudomonas putida KT2440 1043160 NP_744072.1 CDS PP_1918 NC_002947.3 2161050 2162315 D identified by match to TIGR protein family HMM TIGR00247; aminodeoxychorismate lyase 2161050..2162315 Pseudomonas putida KT2440 1043156 NP_744073.1 CDS PP_1920 NC_002947.3 2164314 2165534 R hypothetical protein complement(2164314..2165534) Pseudomonas putida KT2440 1043151 NP_744074.1 CDS PP_1921 NC_002947.3 2166934 2168097 D hypothetical protein 2166934..2168097 Pseudomonas putida KT2440 1043150 NP_744075.1 CDS PP_1922 NC_002947.3 2168785 2169633 R hypothetical protein complement(2168785..2169633) Pseudomonas putida KT2440 1043146 NP_744076.1 CDS PP_1923 NC_002947.3 2169737 2170738 R hypothetical protein complement(2169737..2170738) Pseudomonas putida KT2440 1043144 NP_744077.1 CDS PP_1924 NC_002947.3 2171865 2172425 R similar to GP:4526680; identified by sequence similarity; phosphinothricin N-acetyltransferase complement(2171865..2172425) Pseudomonas putida KT2440 1043142 NP_744078.1 CDS PP_1925 NC_002947.3 2172418 2173500 R similar to GP:6900907; identified by sequence similarity; monooxygenase complement(2172418..2173500) Pseudomonas putida KT2440 1043141 NP_744079.1 CDS PP_1926 NC_002947.3 2173526 2174029 R identified by match to PFAM protein family HMM PF00782; phosphatase complement(2173526..2174029) Pseudomonas putida KT2440 1043140 NP_744080.1 CDS PP_1927 NC_002947.3 2174034 2174759 R similar to GP:11691636; identified by sequence similarity; arsenical resistance protein ArsH complement(2174034..2174759) Pseudomonas putida KT2440 1043138 NP_744081.1 CDS arsC-2 NC_002947.3 2174771 2175259 R similar to GP:3095052, GB:D10483, SP:P07652, PID:145848, PID:216510, PID:40864, and GB:U00096; identified by sequence similarity; arsenate reductase complement(2174771..2175259) Pseudomonas putida KT2440 1043137 NP_744082.1 CDS arsB-1 NC_002947.3 2175256 2176539 R similar to SP:P52146; identified by sequence similarity; arsenite efflux transporter complement(2175256..2176539) Pseudomonas putida KT2440 1043133 NP_744083.1 CDS arsR-1 NC_002947.3 2176569 2176955 R similar to GB:L01087, SP:Q04759, PID:558099, and PID:558100; identified by sequence similarity; arsenic resistance transcriptional regulator complement(2176569..2176955) Pseudomonas putida KT2440 1043132 NP_744084.1 CDS PP_1931 NC_002947.3 2177762 2179198 D similar to GP:9947311; identified by sequence similarity; hypothetical protein 2177762..2179198 Pseudomonas putida KT2440 1043131 NP_744085.1 CDS PP_1932 NC_002947.3 2179803 2180060 R hypothetical protein complement(2179803..2180060) Pseudomonas putida KT2440 1043129 NP_744086.1 CDS PP_1933 NC_002947.3 2180519 2180746 R similar to GB:M73251, SP:P05518, SP:P10327, GB:X07518, GB:X13620, PID:142750, PID:40294, PID:40356, PID:490199, PID:1234884, PID:1234886, PID:1234888, PID:1247717, and PID:2298884; identified by sequence similarity; hypothetical protein complement(2180519..2180746) Pseudomonas putida KT2440 1043127 NP_744087.1 CDS PP_1934 NC_002947.3 2180776 2181432 D hypothetical protein 2180776..2181432 Pseudomonas putida KT2440 1043126 NP_744088.1 CDS PP_1935 NC_002947.3 2181724 2182032 R similar to GP:10432486; identified by sequence similarity; Cro/CI family transcriptional regulator complement(2181724..2182032) Pseudomonas putida KT2440 1043125 NP_744089.1 CDS PP_1936 NC_002947.3 2184669 2187605 R hypothetical protein complement(2184669..2187605) Pseudomonas putida KT2440 1043124 NP_744090.1 CDS PP_1937 NC_002947.3 2189200 2192388 D identified by match to PFAM protein family HMM PF00271; helicase 2189200..2192388 Pseudomonas putida KT2440 1043123 NP_744091.1 CDS PP_1938 NC_002947.3 2192592 2192903 D hypothetical protein 2192592..2192903 Pseudomonas putida KT2440 1043122 NP_744092.1 CDS PP_1940 NC_002947.3 2193511 2195661 R identified by match to PFAM protein family HMM PF04166; methyl-accepting chemotaxis transducer complement(2193511..2195661) Pseudomonas putida KT2440 1043120 NP_744093.1 CDS PP_1941 NC_002947.3 2196384 2196986 R identified by match to PFAM protein family HMM PF00440; hypothetical protein complement(2196384..2196986) Pseudomonas putida KT2440 1043119 NP_744094.1 CDS PP_1942 NC_002947.3 2197023 2197985 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2197023..2197985) Pseudomonas putida KT2440 1043118 NP_744095.1 CDS purU NC_002947.3 2198238 2199098 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2198238..2199098 Pseudomonas putida KT2440 1043117 NP_744096.1 CDS PP_1944 NC_002947.3 2199132 2200409 D similar to GP:6650622; identified by sequence similarity; glycine cleavage system protein T 2199132..2200409 Pseudomonas putida KT2440 1043116 NP_744097.1 CDS folD-1 NC_002947.3 2200424 2201299 D similar to SP:P24186; identified by sequence similarity; 5,10-methylene-tetrahydrofolate dehydrogenase 2200424..2201299 Pseudomonas putida KT2440 1043115 NP_744098.1 CDS PP_1946 NC_002947.3 2201352 2202140 D similar to GP:6580779; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2201352..2202140 Pseudomonas putida KT2440 1043114 NP_744099.1 CDS PP_1947 NC_002947.3 2202321 2203310 D similar to GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, PID:516469, GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, and PID:516469; identified by sequence similarity; hypothetical protein 2202321..2203310 Pseudomonas putida KT2440 1043113 NP_744100.1 CDS PP_1948 NC_002947.3 2203321 2204799 D similar to GP:5578709; identified by sequence similarity; benzaldehyde dehydrogenase 2203321..2204799 Pseudomonas putida KT2440 1043112 NP_744101.1 CDS PP_1949 NC_002947.3 2204821 2206473 D similar to GP:5531409; identified by sequence similarity; GMC family oxidoreductase 2204821..2206473 Pseudomonas putida KT2440 1043110 NP_744102.1 CDS PP_1950 NC_002947.3 2206567 2207745 D similar to GP:2588989; identified by sequence similarity; hypothetical protein 2206567..2207745 Pseudomonas putida KT2440 1043108 NP_744103.1 CDS PP_1951 NC_002947.3 2207786 2208613 D similar to GB:U03057, SP:Q16658, PID:458028, and PID:497269; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2207786..2208613 Pseudomonas putida KT2440 1043107 NP_744104.1 CDS PP_1952 NC_002947.3 2208682 2209629 D similar to GP:5708244, and GP:7328280; identified by sequence similarity; metallo-beta-lactamase 2208682..2209629 Pseudomonas putida KT2440 1043103 NP_744105.1 CDS PP_1953 NC_002947.3 2209753 2210562 D similar to GB:J03077, GB:J03015, GB:M86181, GB:M60255, GB:M60258, GB:X57107, GB:D00422, GB:M81355, GB:X57108, PID:1565257, PID:183231, PID:220064, PID:30235, PID:337756, PID:337760, PID:337762, PID:337765, and PID:337767; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2209753..2210562 Pseudomonas putida KT2440 1043099 NP_744106.1 CDS PP_1954 NC_002947.3 2210607 2211773 D similar to GP:3334787, and GP:3334787; identified by sequence similarity; hypothetical protein 2210607..2211773 Pseudomonas putida KT2440 1043096 NP_744107.1 CDS PP_1955 NC_002947.3 2211866 2213101 D similar to GP:3746884; identified by sequence similarity; cytochrome P450 family protein 2211866..2213101 Pseudomonas putida KT2440 1043095 NP_744108.1 CDS PP_1956 NC_002947.3 2213172 2214140 D hypothetical protein 2213172..2214140 Pseudomonas putida KT2440 1043092 NP_744109.1 CDS PP_1957 NC_002947.3 2214230 2215183 D similar to GP:8346965, and SP:Q52186; identified by sequence similarity; Pdr/VanB family oxidoreductase 2214230..2215183 Pseudomonas putida KT2440 1043091 NP_744110.1 CDS PP_1958 NC_002947.3 2217344 2218171 R hypothetical protein complement(2217344..2218171) Pseudomonas putida KT2440 1043088 NP_744111.1 CDS PP_1959 NC_002947.3 2218918 2220078 R hypothetical protein complement(2218918..2220078) Pseudomonas putida KT2440 1043086 NP_744112.1 CDS PP_1960 NC_002947.3 2220300 2221622 R hypothetical protein complement(2220300..2221622) Pseudomonas putida KT2440 1043085 NP_744113.1 CDS PP_1961 NC_002947.3 2221626 2222615 R identified by match to TIGR protein family HMM TIGR01199; hypothetical protein complement(2221626..2222615) Pseudomonas putida KT2440 1043083 NP_744114.1 CDS PP_1962 NC_002947.3 2222615 2224543 R identified by match to PFAM protein family HMM PF00589; phage integrase site specific recombinase complement(2222615..2224543) Pseudomonas putida KT2440 1043081 NP_744115.1 CDS PP_1963 NC_002947.3 2224626 2226629 R hypothetical protein complement(2224626..2226629) Pseudomonas putida KT2440 1043077 NP_744116.1 CDS PP_1964 NC_002947.3 2226595 2227398 R similar to GP:1942708, SP:P37029, and PID:580773; identified by sequence similarity; deoxynucleotide monophosphate kinase complement(2226595..2227398) Pseudomonas putida KT2440 1043074 NP_744117.1 CDS holB NC_002947.3 2227845 2228831 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 2227845..2228831 Pseudomonas putida KT2440 1043069 NP_744118.1 CDS PP_1967 NC_002947.3 2228862 2229644 D identified by match to PFAM protein family HMM PF01026; TatD family deoxyribonuclease 2228862..2229644 Pseudomonas putida KT2440 1043068 NP_744119.1 CDS PP_1968 NC_002947.3 2230034 2230669 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2230034..2230669 Pseudomonas putida KT2440 1043066 NP_744120.1 CDS PP_1969 NC_002947.3 2230781 2231794 D similar to GB:X64364, GB:L10240, GB:D45131, SP:P35613, PID:1209374, PID:1220307, PID:34449, PID:409357, and PID:633069; identified by sequence similarity; molybdenum cofactor biosynthesis protein A 2230781..2231794 Pseudomonas putida KT2440 1043065 NP_744121.1 CDS PP_1970 NC_002947.3 2231861 2232466 D lipoprotein 2231861..2232466 Pseudomonas putida KT2440 1043064 NP_744122.1 CDS PP_1971 NC_002947.3 2232459 2233037 D hypothetical protein 2232459..2233037 Pseudomonas putida KT2440 1043063 NP_744123.1 CDS tyrB-1 NC_002947.3 2233406 2234602 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2233406..2234602) Pseudomonas putida KT2440 1043062 NP_744124.1 CDS PP_1973 NC_002947.3 2234736 2234834 R hypothetical protein complement(2234736..2234834) Pseudomonas putida KT2440 1043061 NP_744125.1 CDS uvrB NC_002947.3 2234887 2236902 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2234887..2236902 Pseudomonas putida KT2440 1043060 NP_744126.1 CDS PP_1975 NC_002947.3 2237030 2238580 R identified by match to TIGR protein family HMM TIGR00880; EmrB/QacA family drug resistance transporter complement(2237030..2238580) Pseudomonas putida KT2440 1043059 NP_744127.1 CDS PP_1976 NC_002947.3 2238570 2239733 R identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein complement(2238570..2239733) Pseudomonas putida KT2440 1043057 NP_744128.1 CDS gltX NC_002947.3 2239769 2241250 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2239769..2241250 Pseudomonas putida KT2440 1043056 NP_744129.1 CDS PP_1978 NC_002947.3 2242425 2242964 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2242425..2242964 Pseudomonas putida KT2440 1043054 NP_744130.1 CDS PP_1979 NC_002947.3 2242980 2243861 D identified by match to TIGR protein family HMM TIGR01738; hydrolase 2242980..2243861 Pseudomonas putida KT2440 1043051 NP_744131.1 CDS PP_1980 NC_002947.3 2243966 2244400 D identified by match to PFAM protein family HMM PF03061; thioesterase 2243966..2244400 Pseudomonas putida KT2440 1043050 NP_744132.1 CDS PP_1981 NC_002947.3 2244452 2245423 D similar to GP:9949242, GB:L13203, SP:Q12951, PID:1911185, and PID:563168; identified by sequence similarity; NifR3/Smm1 family protein 2244452..2245423 Pseudomonas putida KT2440 1043049 NP_744133.1 CDS ibpA NC_002947.3 2245759 2246208 D similar to GP:9949238; identified by sequence similarity; heat shock protein Hsp20 2245759..2246208 Pseudomonas putida KT2440 1043047 NP_744134.1 CDS PP_1983 NC_002947.3 2246299 2249709 R identified by match to TIGR protein family HMM TIGR00229; sensory box protein complement(2246299..2249709) Pseudomonas putida KT2440 1043046 NP_744135.1 CDS PP_1984 NC_002947.3 2249657 2250535 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2249657..2250535) Pseudomonas putida KT2440 1043043 NP_744136.1 CDS leuC NC_002947.3 2250667 2252100 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2250667..2252100 Pseudomonas putida KT2440 1043041 NP_744137.1 CDS leuD NC_002947.3 2252097 2252741 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2252097..2252741 Pseudomonas putida KT2440 1043040 NP_744138.1 CDS PP_1987 NC_002947.3 2252860 2253624 D identified by match to PFAM protein family HMM PF02390; UbiE/COQ5 family methlytransferase 2252860..2253624 Pseudomonas putida KT2440 1043038 NP_744139.1 CDS leuB NC_002947.3 2253679 2254761 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2253679..2254761 Pseudomonas putida KT2440 1043037 NP_744140.1 CDS asd NC_002947.3 2254825 2255937 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2254825..2255937 Pseudomonas putida KT2440 1043035 NP_744141.1 CDS PP_1990 NC_002947.3 2256641 2257942 D identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2256641..2257942 Pseudomonas putida KT2440 1043034 NP_744142.1 CDS PP_1991 NC_002947.3 2258050 2258235 R hypothetical protein complement(2258050..2258235) Pseudomonas putida KT2440 1043033 NP_744143.1 CDS PP_1992 NC_002947.3 2258334 2259338 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2258334..2259338 Pseudomonas putida KT2440 1043027 NP_744144.1 CDS PP_1993 NC_002947.3 2259410 2262145 D similar to GP:9949226, and GP:3237312; identified by sequence similarity; peptidoglycan-binding LysM 2259410..2262145 Pseudomonas putida KT2440 1043026 NP_744145.1 CDS trpF NC_002947.3 2263205 2263825 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 2263205..2263825 Pseudomonas putida KT2440 1043024 NP_744146.1 CDS accD NC_002947.3 2264048 2264941 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2264048..2264941 Pseudomonas putida KT2440 1043023 NP_744147.1 CDS folC NC_002947.3 2264938 2266248 D similar to GB:X60957, GB:A16753, SP:P35590, PID:396815, PID:512414, and PID:512416; identified by sequence similarity; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2264938..2266248 Pseudomonas putida KT2440 1043022 NP_744148.1 CDS PP_1998 NC_002947.3 2266232 2266876 D sporulation domain-containing protein 2266232..2266876 Pseudomonas putida KT2440 1043018 NP_744149.1 CDS PP_1999 NC_002947.3 2267073 2267630 D similar to GB:M93311, GB:X89604, GB:S72043, SP:P02795, SP:P04731, SP:P04732, SP:P04733, SP:P07438, SP:P13640, SP:P25713, SP:P80295, SP:P80296, SP:P80297, PID:187547, PID:517351, and PID:914851; identified by sequence similarity; colicin V production protein 2267073..2267630 Pseudomonas putida KT2440 1043017 NP_744150.1 CDS purF NC_002947.3 2267673 2269178 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2267673..2269178 Pseudomonas putida KT2440 1043015 NP_744151.1 CDS metZ NC_002947.3 2269195 2270406 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 2269195..2270406 Pseudomonas putida KT2440 1043012 NP_744152.1 CDS PP_2002 NC_002947.3 2270403 2271176 D similar to GB:M36718, GB:X81030, GB:M22596, GB:X13809, SP:P09086, PID:189363, PID:189367, PID:189413, PID:35129, PID:35132, PID:35165, and PID:727160; identified by sequence similarity; oxidoreductase 2270403..2271176 Pseudomonas putida KT2440 1043011 NP_744153.1 CDS PP_2003 NC_002947.3 2272091 2273032 D similar to GP:8885520, and GP:8885520; identified by sequence similarity; hypothetical protein 2272091..2273032 Pseudomonas putida KT2440 1043009 NP_744154.1 CDS PP_2004 NC_002947.3 2273323 2274363 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(2273323..2274363) Pseudomonas putida KT2440 1042999 NP_744155.1 CDS PP_2005 NC_002947.3 2274368 2275486 R similar to GP:9949202; identified by sequence similarity; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(2274368..2275486) Pseudomonas putida KT2440 1042996 NP_744156.1 CDS PP_2006 NC_002947.3 2275675 2277453 R hypothetical protein complement(2275675..2277453) Pseudomonas putida KT2440 1042994 NP_744157.1 CDS PP_2007 NC_002947.3 2277344 2278576 R similar to GB:D14445, SP:Q07411, and PID:286035; identified by sequence similarity; P-47-like protein complement(2277344..2278576) Pseudomonas putida KT2440 1042987 NP_744158.1 CDS fadH NC_002947.3 2278858 2280939 D similar to SP:P42593; identified by sequence similarity; NADH:flavin oxidoreductase 2278858..2280939 Pseudomonas putida KT2440 1042976 NP_744159.1 CDS PP_2009 NC_002947.3 2281176 2282069 D identified by match to TIGR protein family HMM TIGR01274; 1-aminocyclopropane-1-carboxylate deaminase 2281176..2282069 Pseudomonas putida KT2440 1042971 NP_744160.1 CDS PP_2010 NC_002947.3 2282060 2282605 R similar to SP:P08732; identified by sequence similarity; cytochrome B561 complement(2282060..2282605) Pseudomonas putida KT2440 1042969 NP_744161.1 CDS PP_2011 NC_002947.3 2282834 2283883 R hypothetical protein complement(2282834..2283883) Pseudomonas putida KT2440 1042964 NP_744162.1 CDS ppnK NC_002947.3 2283798 2284745 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2283798..2284745 Pseudomonas putida KT2440 1042961 NP_744163.1 CDS PP_2013 NC_002947.3 2284745 2285716 D identified by match to PFAM protein family HMM PF00149; metallophosphoesterase 2284745..2285716 Pseudomonas putida KT2440 1042954 NP_744164.1 CDS PP_2014 NC_002947.3 2285713 2286600 D similar to GP:9949195; identified by sequence similarity; rhomboid family protein 2285713..2286600 Pseudomonas putida KT2440 1042941 NP_744165.1 CDS PP_2015 NC_002947.3 2286614 2286874 D hypothetical protein 2286614..2286874 Pseudomonas putida KT2440 1042938 NP_744166.1 CDS PP_2016 NC_002947.3 2286871 2287701 D similar to GP:9949192; identified by sequence similarity; hypothetical protein 2286871..2287701 Pseudomonas putida KT2440 1042926 NP_744167.1 CDS pepN NC_002947.3 2287715 2290372 D similar to SP:P04825; identified by sequence similarity; aminopeptidase 2287715..2290372 Pseudomonas putida KT2440 1042924 NP_744168.1 CDS PP_2018 NC_002947.3 2290647 2291606 D identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 2290647..2291606 Pseudomonas putida KT2440 1042916 NP_744169.1 CDS PP_2019 NC_002947.3 2291603 2294002 D similar to GP:9949187, and GP:9949187; identified by sequence similarity; hypothetical protein 2291603..2294002 Pseudomonas putida KT2440 1042911 NP_744170.1 CDS PP_2020 NC_002947.3 2294003 2294356 D hypothetical protein 2294003..2294356 Pseudomonas putida KT2440 1042909 NP_744171.1 CDS PP_2021 NC_002947.3 2294322 2295452 D similar to GP:9950416; identified by sequence similarity; hypothetical protein 2294322..2295452 Pseudomonas putida KT2440 1042907 NP_744172.1 CDS PP_2022 NC_002947.3 2295442 2295675 R hypothetical protein complement(2295442..2295675) Pseudomonas putida KT2440 1042905 NP_744173.1 CDS PP_2023 NC_002947.3 2295884 2296483 R similar to GP:11177841; identified by sequence similarity; glutathione S-transferase complement(2295884..2296483) Pseudomonas putida KT2440 1042903 NP_744174.1 CDS sbcC NC_002947.3 2296474 2300118 R similar to GB:X03833, GB:X02851, GB:M15329, GB:X56086, SP:P01583, PID:186278, PID:186280, PID:33786, PID:33795, PID:35661, and PID:755744; identified by sequence similarity; SMC domain-containing protein complement(2296474..2300118) Pseudomonas putida KT2440 1042900 NP_744175.1 CDS sbcD NC_002947.3 2300115 2301353 R similar to GB:L11329, GB:U23853, SP:Q05923, PID:292376, and PID:775212; identified by sequence similarity; nuclease SbcCD subunit D complement(2300115..2301353) Pseudomonas putida KT2440 1042899 NP_744176.1 CDS PP_2026 NC_002947.3 2302502 2302768 R hypothetical protein complement(2302502..2302768) Pseudomonas putida KT2440 1042895 NP_744177.1 CDS PP_2027 NC_002947.3 2303207 2304838 R similar to GP:9949182; identified by sequence similarity; hypothetical protein complement(2303207..2304838) Pseudomonas putida KT2440 1042891 NP_744178.1 CDS PP_2028 NC_002947.3 2304835 2306553 R identified by match to PFAM protein family HMM PF00515; hypothetical protein complement(2304835..2306553) Pseudomonas putida KT2440 1042890 NP_744179.1 CDS PP_2029 NC_002947.3 2306550 2307626 R identified by match to PFAM protein family HMM PF00092; von Willebrand factor A complement(2306550..2307626) Pseudomonas putida KT2440 1042889 NP_744180.1 CDS PP_2030 NC_002947.3 2307619 2308113 R hypothetical protein complement(2307619..2308113) Pseudomonas putida KT2440 1042888 NP_744181.1 CDS PP_2031 NC_002947.3 2308110 2309066 R identified by match to PFAM protein family HMM PF01882; hypothetical protein complement(2308110..2309066) Pseudomonas putida KT2440 1042887 NP_744182.1 CDS PP_2032 NC_002947.3 2309059 2310018 R identified by match to PFAM protein family HMM PF00004; ATPase complement(2309059..2310018) Pseudomonas putida KT2440 1042884 NP_744183.1 CDS PP_2033 NC_002947.3 2310196 2311557 D hypothetical protein 2310196..2311557 Pseudomonas putida KT2440 1042883 NP_744184.1 CDS PP_2034 NC_002947.3 2311593 2312852 R identified by match to PFAM protein family HMM PF03631; major facilitator superfamily protein complement(2311593..2312852) Pseudomonas putida KT2440 1042882 NP_744185.1 CDS benE-1 NC_002947.3 2312870 2314084 R similar to GP:7542441; identified by sequence similarity; benzoate transporter complement(2312870..2314084) Pseudomonas putida KT2440 1042881 NP_744186.1 CDS PP_2036 NC_002947.3 2314234 2315121 R identified by match to TIGR protein family HMM TIGR00674; dihydrodipicolinate synthetase complement(2314234..2315121) Pseudomonas putida KT2440 1042880 NP_744187.1 CDS PP_2037 NC_002947.3 2315166 2315948 R identified by match to TIGR protein family HMM TIGR01086; class II aldolase/adducin domain-containing protein complement(2315166..2315948) Pseudomonas putida KT2440 1042879 NP_744188.1 CDS PP_2038 NC_002947.3 2316044 2317741 D similar to GP:5881868; identified by sequence similarity; long-chain-fatty-acid--CoA ligase 2316044..2317741 Pseudomonas putida KT2440 1042877 NP_744189.1 CDS PP_2039 NC_002947.3 2317756 2318922 D similar to GP:5881869; identified by sequence similarity; acyl-CoA dehydrogenase 2317756..2318922 Pseudomonas putida KT2440 1042876 NP_744190.1 CDS PP_2040 NC_002947.3 2318985 2320280 D similar to GP:5881870; identified by sequence similarity; major facilitator family transporter 2318985..2320280 Pseudomonas putida KT2440 1042875 NP_744191.1 CDS PP_2041 NC_002947.3 2320293 2321237 R similar to GP:3152946; identified by sequence similarity; LysR family transcriptional regulator complement(2320293..2321237) Pseudomonas putida KT2440 1042873 NP_744192.1 CDS PP_2042 NC_002947.3 2321449 2323305 D similar to GP:9950108; identified by sequence similarity; hypothetical protein 2321449..2323305 Pseudomonas putida KT2440 1042872 NP_744193.1 CDS PP_2043 NC_002947.3 2323310 2324638 D similar to GP:9946236; identified by sequence similarity; hypothetical protein 2323310..2324638 Pseudomonas putida KT2440 1042871 NP_744194.1 CDS PP_2044 NC_002947.3 2324638 2325024 D similar to GP:5441761, and GP:5441761; identified by sequence similarity; hypothetical protein 2324638..2325024 Pseudomonas putida KT2440 1042870 NP_744195.1 CDS PP_2045 NC_002947.3 2325339 2327300 R identified by match to PFAM protein family HMM PF00753; metallo-beta-lactamase complement(2325339..2327300) Pseudomonas putida KT2440 1042868 NP_744196.1 CDS PP_2046 NC_002947.3 2327402 2328325 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2327402..2328325) Pseudomonas putida KT2440 1042867 NP_744197.1 CDS PP_2047 NC_002947.3 2328410 2329648 D identified by match to PFAM protein family HMM PF00725; 3-hydroxyacyl-CoA dehydrogenase 2328410..2329648 Pseudomonas putida KT2440 1042865 NP_744198.1 CDS PP_2048 NC_002947.3 2329570 2331420 D similar to GP:9951491; identified by sequence similarity; acyl-CoA dehydrogenase 2329570..2331420 Pseudomonas putida KT2440 1042864 NP_744199.1 CDS PP_2049 NC_002947.3 2331454 2332617 D identified by match to PFAM protein family HMM PF03473; iron-containing alcohol dehydrogenase 2331454..2332617 Pseudomonas putida KT2440 1042863 NP_744200.1 CDS PP_2050 NC_002947.3 2332617 2333069 D identified by match to PFAM protein family HMM PF03061; hypothetical protein 2332617..2333069 Pseudomonas putida KT2440 1042862 NP_744201.1 CDS atoB NC_002947.3 2333066 2334250 D similar to GB:M34254, SP:P00313, PID:149775, GB:M34254, SP:P00313, and PID:149775; identified by sequence similarity; acetyl-CoA acetyltransferase 2333066..2334250 Pseudomonas putida KT2440 1042860 NP_744202.1 CDS PP_2052 NC_002947.3 2334330 2336453 R identified by match to TIGR protein family HMM TIGR01509; HAD superfamily hydrolase complement(2334330..2336453) Pseudomonas putida KT2440 1042859 NP_744203.1 CDS PP_2053 NC_002947.3 2336850 2337146 D hypothetical protein 2336850..2337146 Pseudomonas putida KT2440 1042858 NP_744204.1 CDS PP_2054 NC_002947.3 2337165 2338058 R similar to GB:X60036, GB:X77337, and SP:Q00325; identified by sequence similarity; LysR family transcriptional regulator complement(2337165..2338058) Pseudomonas putida KT2440 1042857 NP_744205.1 CDS PP_2055 NC_002947.3 2338205 2339284 D similar to SP:P38487, PID:500611, PID:840668, SP:P38487, PID:500611, and PID:840668; identified by sequence similarity; hypothetical protein 2338205..2339284 Pseudomonas putida KT2440 1042856 NP_744206.1 CDS dctM NC_002947.3 2339344 2340663 D similar to GB:J04543, SP:P20073, and PID:338244; identified by sequence similarity; sodium:dicarboxylate symporter 2339344..2340663 Pseudomonas putida KT2440 1042852 NP_744207.1 CDS PP_2057 NC_002947.3 2340778 2342082 D identified by match to PFAM protein family HMM PF03600; citrate transporter 2340778..2342082 Pseudomonas putida KT2440 1042850 NP_744208.1 CDS PP_2058 NC_002947.3 2342146 2343399 D identified by match to PFAM protein family HMM PF03573; porin 2342146..2343399 Pseudomonas putida KT2440 1042849 NP_744209.1 CDS PP_2059 NC_002947.3 2343452 2343700 R similar to GB:M60264, PID:144091, GB:M60264, and PID:144091; identified by sequence similarity; CsbD family protein complement(2343452..2343700) Pseudomonas putida KT2440 1042848 NP_744210.1 CDS soxR NC_002947.3 2343847 2344302 R similar to SP:P09888, PID:780269, SP:P09888, and PID:780269; identified by sequence similarity; transcriptional regulator SoxR complement(2343847..2344302) Pseudomonas putida KT2440 1042843 NP_744211.1 CDS PP_2061 NC_002947.3 2344434 2344646 R hypothetical protein complement(2344434..2344646) Pseudomonas putida KT2440 1042839 NP_744212.1 CDS PP_2062 NC_002947.3 2344721 2345344 R similar to GP:1070029, and GP:2950328; identified by sequence similarity; hypothetical protein complement(2344721..2345344) Pseudomonas putida KT2440 1042838 NP_744213.1 CDS PP_2063 NC_002947.3 2346543 2346647 D hypothetical protein 2346543..2346647 Pseudomonas putida KT2440 1042836 NP_744214.1 CDS PP_2064 NC_002947.3 2346697 2347794 D similar to GB:U12892, and PID:530857; identified by sequence similarity; RND family efflux transporter MFP subunit 2346697..2347794 Pseudomonas putida KT2440 1042835 NP_744215.1 CDS PP_2065 NC_002947.3 2347791 2350874 D identified by match to PFAM protein family HMM PF03970; acriflavin resistance protein 2347791..2350874 Pseudomonas putida KT2440 1042833 NP_744216.1 CDS PP_2066 NC_002947.3 2350928 2351692 R similar to GP:10173529; identified by sequence similarity; GntR family transcriptional regulator complement(2350928..2351692) Pseudomonas putida KT2440 1042818 NP_744217.1 CDS PP_2067 NC_002947.3 2351747 2353330 R identified by match to PFAM protein family HMM PF04226; EmrB/QacA family drug resistance transporter complement(2351747..2353330) Pseudomonas putida KT2440 1042817 NP_744218.1 CDS PP_2068 NC_002947.3 2353251 2354528 R identified by match to TIGR protein family HMM TIGR01730; multidrug efflux MFS membrane fusion protein complement(2353251..2354528) Pseudomonas putida KT2440 1042816 NP_744219.1 CDS PP_2069 NC_002947.3 2354586 2356007 R identified by match to PFAM protein family HMM PF02321; multidrug efflux MFS outer membrane protein complement(2354586..2356007) Pseudomonas putida KT2440 1042813 NP_744220.1 CDS PP_2070 NC_002947.3 2356108 2356818 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(2356108..2356818) Pseudomonas putida KT2440 1042810 NP_744221.1 CDS PP_2071 NC_002947.3 2356988 2357374 R hypothetical protein complement(2356988..2357374) Pseudomonas putida KT2440 1042806 NP_744222.1 CDS PP_2072 NC_002947.3 2357483 2358307 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(2357483..2358307) Pseudomonas putida KT2440 1042798 NP_744223.1 CDS PP_2073 NC_002947.3 2358327 2358842 R similar to GP:9947377; identified by sequence similarity; acetyltransferase complement(2358327..2358842) Pseudomonas putida KT2440 1042797 NP_744224.1 CDS PP_2074 NC_002947.3 2359040 2359963 D similar to GP:3646369; identified by sequence similarity; LysR family transcriptional regulator 2359040..2359963 Pseudomonas putida KT2440 1042795 NP_744225.1 CDS PP_2075 NC_002947.3 2360020 2361153 R hypothetical protein complement(2360020..2361153) Pseudomonas putida KT2440 1042793 NP_744226.1 CDS PP_2076 NC_002947.3 2361150 2363873 R hypothetical protein complement(2361150..2363873) Pseudomonas putida KT2440 1042792 NP_744227.1 CDS lysA-1 NC_002947.3 2364206 2365438 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(2364206..2365438) Pseudomonas putida KT2440 1042789 NP_744228.1 CDS PP_2078 NC_002947.3 2365562 2366467 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 2365562..2366467 Pseudomonas putida KT2440 1042785 NP_744229.1 CDS PP_2079 NC_002947.3 2366551 2367009 R hypothetical protein complement(2366551..2367009) Pseudomonas putida KT2440 1042776 NP_744230.1 CDS PP_2080 NC_002947.3 2367054 2372045 D similar to GP:9949175, and GP:9949175; identified by sequence similarity; NAD-glutamate dehydrogenase 2367054..2372045 Pseudomonas putida KT2440 1042774 NP_744231.1 CDS PP_2081 NC_002947.3 2372157 2372975 R similar to GP:9947748; identified by sequence similarity; hypothetical protein complement(2372157..2372975) Pseudomonas putida KT2440 1042771 NP_744232.1 CDS ppsA NC_002947.3 2373167 2375542 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2373167..2375542 Pseudomonas putida KT2440 1042760 NP_744233.1 CDS PP_2083 NC_002947.3 2375644 2376636 D similar to GP:5668607; identified by sequence similarity; lipase 2375644..2376636 Pseudomonas putida KT2440 1042757 NP_744234.1 CDS menG NC_002947.3 2376841 2377332 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2376841..2377332 Pseudomonas putida KT2440 1042755 NP_744235.1 CDS cmaX NC_002947.3 2377357 2378355 D similar to GP:5668609, and GP:5668609; identified by sequence similarity; cmaX protein 2377357..2378355 Pseudomonas putida KT2440 1042751 NP_744236.1 CDS crfX NC_002947.3 2378443 2378715 D similar to GP:5668603, and GP:5668603; identified by sequence similarity; hypothetical protein 2378443..2378715 Pseudomonas putida KT2440 1042748 NP_744237.1 CDS cmpX NC_002947.3 2378718 2379542 D similar to GP:5668604, and GP:5668604; identified by sequence similarity; TM helix repeat-containing protein 2378718..2379542 Pseudomonas putida KT2440 1042734 NP_744238.1 CDS sigX NC_002947.3 2379632 2380222 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 2379632..2380222 Pseudomonas putida KT2440 1042732 NP_744239.1 CDS oprF NC_002947.3 2380334 2381368 D similar to GP:4580972, and GP:4580972; identified by sequence similarity; OmpF family protein 2380334..2381368 Pseudomonas putida KT2440 1042726 NP_744240.1 CDS cobA-1 NC_002947.3 2381455 2382195 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(2381455..2382195) Pseudomonas putida KT2440 1042724 NP_744241.1 CDS PP_2091 NC_002947.3 2382223 2383893 R similar to GP:9947763; identified by sequence similarity; serine/threonine-protein kinase complement(2382223..2383893) Pseudomonas putida KT2440 1042722 NP_744242.1 CDS nasA NC_002947.3 2383903 2385138 R similar to GB:M19364, SP:P07316, PID:181099, and PID:181118; identified by sequence similarity; nitrite transporter complement(2383903..2385138) Pseudomonas putida KT2440 1042709 NP_744243.1 CDS nasT NC_002947.3 2385299 2385874 R similar to GB:U05040, and PID:460152; identified by sequence similarity; response regulator receiver and ANTAR domain-containing protein complement(2385299..2385874) Pseudomonas putida KT2440 1044944 NP_744244.1 CDS PP_2094 NC_002947.3 2385886 2387100 R similar to GB:U05040, and PID:460152; identified by sequence similarity; nitrate-binding protein NasS complement(2385886..2387100) Pseudomonas putida KT2440 1044946 NP_744245.1 CDS pyrD NC_002947.3 2387238 2388260 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2387238..2388260 Pseudomonas putida KT2440 1044947 NP_744246.2 CDS rlmL NC_002947.3 2389182 2391374 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2389182..2391374 Pseudomonas putida KT2440 1044948 NP_744247.1 CDS PP_2097 NC_002947.3 2391469 2393871 D identified by match to PFAM protein family HMM PF03580; PAS/PAC sensor-containing diguanylate cyclase 2391469..2393871 Pseudomonas putida KT2440 1044949 NP_744248.1 CDS dacB NC_002947.3 2393977 2395389 R identified by match to PFAM protein family HMM PF02113; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(2393977..2395389) Pseudomonas putida KT2440 1044950 NP_744249.1 CDS PP_2099 NC_002947.3 2395632 2395976 R similar to GP:9949151, and GP:9949151; identified by sequence similarity; hypothetical protein complement(2395632..2395976) Pseudomonas putida KT2440 1044951 NP_744250.1 CDS PP_2100 NC_002947.3 2396018 2399653 R similar to GB:L07555, GB:Z30426, GB:Z30430, GB:Z30427, GB:Z30429, GB:Z30428, SP:Q07108, PID:291898, PID:397939, and PID:558352; identified by sequence similarity; two-component sensor protein complement(2396018..2399653) Pseudomonas putida KT2440 1044952 NP_744251.1 CDS PP_2101 NC_002947.3 2399656 2400279 R similar to GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, and PID:530884; identified by sequence similarity; LuxR family transcriptional regulator complement(2399656..2400279) Pseudomonas putida KT2440 1044953 NP_744252.1 CDS PP_2102 NC_002947.3 2400554 2401885 R dGTPase type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2400554..2401885) Pseudomonas putida KT2440 1044954 NP_744253.1 CDS PP_2103 NC_002947.3 2402034 2402363 R similar to GP:9949147, and GP:9949147; identified by sequence similarity; hypothetical protein complement(2402034..2402363) Pseudomonas putida KT2440 1044955 NP_744254.1 CDS PP_2104 NC_002947.3 2402360 2402734 R hypothetical protein complement(2402360..2402734) Pseudomonas putida KT2440 1044956 NP_744255.1 CDS PP_2105 NC_002947.3 2402744 2403058 R hypothetical protein complement(2402744..2403058) Pseudomonas putida KT2440 1044957 NP_744256.1 CDS PP_2106 NC_002947.3 2403371 2404579 D identified by match to PFAM protein family HMM PF00909; Rh family protein/ammonium transporter 2403371..2404579 Pseudomonas putida KT2440 1044958 NP_744257.1 CDS PP_2107 NC_002947.3 2404653 2404892 D similar to GP:9949137; identified by sequence similarity; glutaredoxin 2404653..2404892 Pseudomonas putida KT2440 1044959 NP_744258.1 CDS PP_2108 NC_002947.3 2405001 2405432 D similar to GP:7801292; identified by sequence similarity; peptidase M15A 2405001..2405432 Pseudomonas putida KT2440 1044960 NP_744259.1 CDS PP_2109 NC_002947.3 2405498 2405806 D similar to GP:9946825; identified by sequence similarity; hypothetical protein 2405498..2405806 Pseudomonas putida KT2440 1044961 NP_744260.1 CDS aer-2 NC_002947.3 2406996 2408561 R similar to GP:9947522, GB:K01316, SP:P01857, SP:P01859, SP:P01860, SP:P01861, PID:184759, PID:185291, PID:2414492, PID:2414494, PID:567112, PID:577056, and PID:683576; identified by sequence similarity; aerotaxis receptor Aer-2 complement(2406996..2408561) Pseudomonas putida KT2440 1044963 NP_744261.1 CDS acnA NC_002947.3 2408703 2411444 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2408703..2411444) Pseudomonas putida KT2440 1044964 NP_744262.1 CDS PP_2113 NC_002947.3 2411669 2412733 D similar to GP:9947524; identified by sequence similarity; RNA 2'-O-ribose methyltransferase 2411669..2412733 Pseudomonas putida KT2440 1044965 NP_744263.1 CDS PP_2114 NC_002947.3 2413154 2414455 D identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2413154..2414455 Pseudomonas putida KT2440 1044966 NP_744264.1 CDS PP_2115 NC_002947.3 2414800 2414997 D hypothetical protein 2414800..2414997 Pseudomonas putida KT2440 1044968 NP_744265.1 CDS PP_2116 NC_002947.3 2415019 2415261 D TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 2415019..2415261 Pseudomonas putida KT2440 1044969 NP_744266.1 CDS pdxB NC_002947.3 2415322 2416464 D Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 2415322..2416464 Pseudomonas putida KT2440 1044970 NP_744267.1 CDS PP_2118 NC_002947.3 2416579 2416776 R similar to GP:9947533; identified by sequence similarity; hypothetical protein complement(2416579..2416776) Pseudomonas putida KT2440 1044971 NP_744268.1 CDS PP_2119 NC_002947.3 2416963 2418726 D identified by match to PFAM protein family HMM PF03631; lipid ABC transporter ATPase/inner membrane protein 2416963..2418726 Pseudomonas putida KT2440 1044972 NP_744269.1 CDS PP_2120 NC_002947.3 2418847 2420514 D identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 2418847..2420514 Pseudomonas putida KT2440 1044973 NP_744270.1 CDS PP_2121 NC_002947.3 2420778 2420999 R lipoprotein complement(2420778..2420999) Pseudomonas putida KT2440 1044974 NP_744271.1 CDS moaB-1 NC_002947.3 2421187 2421726 D similar to SP:P30746; identified by sequence similarity; molybdenum cofactor biosynthesis protein B 2421187..2421726 Pseudomonas putida KT2440 1044975 NP_744272.1 CDS moeA NC_002947.3 2421710 2422936 D similar to GB:X02751, GB:L00043, GB:X53291, GB:X53292, GB:X05564, GB:X05565, GB:L00040, GB:L00041, GB:L00042, GB:M10055, GB:K03211, GB:M25898, GB:S68580, GB:X07440, GB:X61282, GB:X00645, SP:P01111, SP:P01112, PID:1335234, PID:1335235, PID:1335236, PID:1335287, PID:190927, PID:190938, PID:35092, PID:35103, PID:465130, PID:553520, PID:553633, PID:553635, PID:553638, PID:825697, and PID:929658; identified by sequence similarity; molybdopterin biosynthesis MoeA protein 2421710..2422936 Pseudomonas putida KT2440 1044976 NP_744273.1 CDS PP_2124 NC_002947.3 2422925 2424172 R identified by match to PFAM protein family HMM PF00534; glycosyl transferase family protein complement(2422925..2424172) Pseudomonas putida KT2440 1044977 NP_744274.2 CDS PP_2125 NC_002947.3 2424429 2425316 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2424429..2425316 Pseudomonas putida KT2440 1044978 NP_744275.1 CDS PP_2126 NC_002947.3 2425300 2425959 R similar to GP:4007711, GB:L22647, SP:P34995, and PID:410209; identified by sequence similarity; LuxR family transcriptional regulator complement(2425300..2425959) Pseudomonas putida KT2440 1044979 NP_744276.1 CDS PP_2127 NC_002947.3 2425949 2426890 R identified by match to PFAM protein family HMM PF02518; sensor histidine kinase complement(2425949..2426890) Pseudomonas putida KT2440 1044980 NP_744277.1 CDS chev-2 NC_002947.3 2428073 2429008 D identified by match to PFAM protein family HMM PF00072; chemotaxis protein CheV 2428073..2429008 Pseudomonas putida KT2440 1044981 NP_744278.1 CDS PP_2129 NC_002947.3 2429064 2429867 D identified by match to PFAM protein family HMM PF03473; MOSC domain-containing protein 2429064..2429867 Pseudomonas putida KT2440 1044982 NP_744279.1 CDS PP_2130 NC_002947.3 2429980 2431953 R similar to SP:P03810; identified by sequence similarity; lytic transglycosylase complement(2429980..2431953) Pseudomonas putida KT2440 1044983 NP_744280.1 CDS PP_2131 NC_002947.3 2432126 2434054 D similar to GB:L02321, SP:P46439, and PID:468260; identified by sequence similarity; ABC transporter ATP-binding protein 2432126..2434054 Pseudomonas putida KT2440 1044984 NP_744281.1 CDS PP_2132 NC_002947.3 2434162 2434602 R identified by match to PFAM protein family HMM PF00582; universal stress protein complement(2434162..2434602) Pseudomonas putida KT2440 1044985 NP_744282.1 CDS PP_2133 NC_002947.3 2434686 2435150 D hypothetical protein 2434686..2435150 Pseudomonas putida KT2440 1044986 NP_744283.1 CDS PP_2134 NC_002947.3 2435454 2436419 D similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 2435454..2436419 Pseudomonas putida KT2440 1044987 NP_744284.1 CDS PP_2135 NC_002947.3 2436589 2436705 R hypothetical protein complement(2436589..2436705) Pseudomonas putida KT2440 1044988 NP_744285.1 CDS fadB NC_002947.3 2437078 2439225 D includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 2437078..2439225 Pseudomonas putida KT2440 1044991 NP_744286.1 CDS fadA NC_002947.3 2439257 2440432 D FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 2439257..2440432 Pseudomonas putida KT2440 1044992 NP_744287.1 CDS PP_2138 NC_002947.3 2440508 2440759 D similar to GP:9949114; identified by sequence similarity; hypothetical protein 2440508..2440759 Pseudomonas putida KT2440 1044993 NP_744288.1 CDS topA NC_002947.3 2440860 2443469 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2440860..2443469 Pseudomonas putida KT2440 1044994 NP_744289.1 CDS PP_2140 NC_002947.3 2443482 2444075 D hypothetical protein 2443482..2444075 Pseudomonas putida KT2440 1044995 NP_744290.1 CDS PP_2141 NC_002947.3 2444126 2444359 D hypothetical protein 2444126..2444359 Pseudomonas putida KT2440 1044996 NP_744291.1 CDS PP_2142 NC_002947.3 2444410 2444886 R similar to GB:S45627, GB:S45629, GB:S45636, GB:S45637, GB:S45639, GB:S45640, GB:S45635, GB:M16594, GB:X65726, GB:X65727, GB:X65728, GB:X65729, GB:X65730, GB:X65731, GB:X65732, SP:P08263, SP:P09210, PID:306811, PID:825605, and PID:825606; identified by sequence similarity; cell division inhibitor-like protein complement(2444410..2444886) Pseudomonas putida KT2440 1044997 NP_744292.1 CDS lexA-1 NC_002947.3 2444900 2445508 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2444900..2445508) Pseudomonas putida KT2440 1044998 NP_744293.1 CDS PP_2144 NC_002947.3 2445724 2446431 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2445724..2446431 Pseudomonas putida KT2440 1044999 NP_744294.1 CDS nagZ NC_002947.3 2446609 2447619 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2446609..2447619 Pseudomonas putida KT2440 1045000 NP_744295.1 CDS PP_2146 NC_002947.3 2447762 2449762 R identified by match to PFAM protein family HMM PF00271; Snf2/Rad54 family helicase complement(2447762..2449762) Pseudomonas putida KT2440 1045001 NP_744296.1 CDS PP_2147 NC_002947.3 2451084 2451656 R hypothetical protein complement(2451084..2451656) Pseudomonas putida KT2440 1045002 NP_744297.1 CDS mfd NC_002947.3 2451666 2455115 R identified by match to TIGR protein family HMM TIGR00643; transcription-repair coupling factor complement(2451666..2455115) Pseudomonas putida KT2440 1045003 NP_744298.1 CDS gap-2 NC_002947.3 2455283 2456746 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2455283..2456746 Pseudomonas putida KT2440 1045004 NP_744299.1 CDS PP_2150 NC_002947.3 2456927 2457925 D similar to SP:P41780; identified by sequence similarity; ApbE family lipoprotein 2456927..2457925 Pseudomonas putida KT2440 1045006 NP_744300.1 CDS sthA NC_002947.3 2458130 2459524 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 2458130..2459524 Pseudomonas putida KT2440 1045007 NP_744301.1 CDS PP_2152 NC_002947.3 2459573 2460289 R identified by match to PFAM protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(2459573..2460289) Pseudomonas putida KT2440 1045008 NP_744302.1 CDS PP_2153 NC_002947.3 2460321 2460905 R similar to GP:9949089, and GP:9949089; identified by sequence similarity; type IV pilus assembly PilZ complement(2460321..2460905) Pseudomonas putida KT2440 1045010 NP_744303.1 CDS lolC NC_002947.3 2460999 2462249 D similar to SP:P31733, and PID:38828; identified by sequence similarity; lipoprotein releasing system transmembrane protein LolC/E family 2460999..2462249 Pseudomonas putida KT2440 1045011 NP_744304.1 CDS lolD NC_002947.3 2462242 2462940 D similar to SP:P75957; identified by sequence similarity; lipoprotein releasing system, ATP-binding protein 2462242..2462940 Pseudomonas putida KT2440 1045012 NP_744305.1 CDS lolE NC_002947.3 2463001 2464242 D similar to SP:P31733, and PID:38828; identified by sequence similarity; lipoprotein releasing system transmembrane protein LolC/E family 2463001..2464242 Pseudomonas putida KT2440 1045014 NP_744306.1 CDS PP_2157 NC_002947.3 2464282 2465634 R identified by match to TIGR protein family HMM TIGR01386; heavy metal sensor signal transduction histidine kinase complement(2464282..2465634) Pseudomonas putida KT2440 1045015 NP_744307.1 CDS PP_2158 NC_002947.3 2465631 2466311 R identified by match to TIGR protein family HMM TIGR01387; two component heavy metal response transcriptional regulator complement(2465631..2466311) Pseudomonas putida KT2440 1045016 NP_744308.1 CDS PP_2159 NC_002947.3 2466512 2467039 D identified by match to PFAM protein family HMM PF00127; plastocyanin/azurin family copper binding protein 2466512..2467039 Pseudomonas putida KT2440 1045017 NP_744309.1 CDS queF NC_002947.3 2467108 2467938 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2467108..2467938 Pseudomonas putida KT2440 1045018 NP_744310.1 CDS PP_2161 NC_002947.3 2467970 2468233 R similar to GP:9948888; identified by sequence similarity; hypothetical protein complement(2467970..2468233) Pseudomonas putida KT2440 1045020 NP_744311.1 CDS PP_2162 NC_002947.3 2468356 2468919 R similar to GP:9948886; identified by sequence similarity; hypothetical protein complement(2468356..2468919) Pseudomonas putida KT2440 1045021 NP_744312.1 CDS vacJ NC_002947.3 2469121 2469828 D VacJ family lipoprotein 2469121..2469828 Pseudomonas putida KT2440 1045022 NP_744313.1 CDS PP_2164 NC_002947.3 2469863 2470162 R similar to GP:9948882; identified by sequence similarity; type IV pilus assembly PilZ complement(2469863..2470162) Pseudomonas putida KT2440 1045023 NP_744314.1 CDS PP_2165 NC_002947.3 2470433 2471614 D identified by match to PFAM protein family HMM PF00072; response regulator 2470433..2471614 Pseudomonas putida KT2440 1045024 NP_744315.1 CDS PP_2166 NC_002947.3 2471611 2472093 D identified by match to PFAM protein family HMM PF01740; anti-sigma-factor antagonist 2471611..2472093 Pseudomonas putida KT2440 1045025 NP_744316.1 CDS PP_2167 NC_002947.3 2472242 2474092 R hypothetical protein complement(2472242..2474092) Pseudomonas putida KT2440 1045027 NP_744317.1 CDS tal NC_002947.3 2474272 2475198 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(2474272..2475198) Pseudomonas putida KT2440 1045028 NP_744318.1 CDS PP_2169 NC_002947.3 2475355 2476365 R identified by match to PFAM protein family HMM PF01207; tRNA-dihydrouridine synthase A complement(2475355..2476365) Pseudomonas putida KT2440 1045029 NP_744319.1 CDS PP_2170 NC_002947.3 2476463 2477161 D identified by match to PFAM protein family HMM PF01817; chorismate mutase 2476463..2477161 Pseudomonas putida KT2440 1045030 NP_744320.1 CDS PP_2171 NC_002947.3 2477207 2477833 R similar to GP:10176119; identified by sequence similarity; amino acid transporter LysE complement(2477207..2477833) Pseudomonas putida KT2440 1045031 NP_744321.1 CDS PP_2172 NC_002947.3 2478301 2478744 D hypothetical protein 2478301..2478744 Pseudomonas putida KT2440 1045032 NP_744322.1 CDS PP_2173 NC_002947.3 2479189 2480058 R similar to GB:J00230, SP:P01857, SP:P01859, SP:P01860, SP:P01861, PID:1335110, PID:1335112, PID:1335113, PID:184758, PID:567112, and PID:577056; identified by sequence similarity; AraC family transcriptional regulator complement(2479189..2480058) Pseudomonas putida KT2440 1045033 NP_744323.1 CDS PP_2174 NC_002947.3 2480165 2480557 R similar to GP:9950386, and GP:9950386; identified by sequence similarity; hypothetical protein complement(2480165..2480557) Pseudomonas putida KT2440 1045034 NP_744324.1 CDS PP_2175 NC_002947.3 2480639 2481343 R similar to GB:L22081, SP:P37032, and PID:348945; identified by sequence similarity; short-chain dehydrogenase/reductase SDR complement(2480639..2481343) Pseudomonas putida KT2440 1045035 NP_744325.1 CDS PP_2176 NC_002947.3 2481443 2482429 R similar to GB:L17326, and PID:306325; identified by sequence similarity; LysR family transcriptional regulator complement(2481443..2482429) Pseudomonas putida KT2440 1045036 NP_744326.1 CDS PP_2177 NC_002947.3 2482550 2483104 D identified by match to PFAM protein family HMM PF01381; transcriptional regulator 2482550..2483104 Pseudomonas putida KT2440 1045037 NP_744327.1 CDS PP_2178 NC_002947.3 2483132 2484478 D similar to SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 2483132..2484478 Pseudomonas putida KT2440 1045038 NP_744328.1 CDS PP_2179 NC_002947.3 2484563 2485336 D similar to SP:P76038; identified by sequence similarity; peptidase C26 2484563..2485336 Pseudomonas putida KT2440 1045039 NP_744329.1 CDS PP_2180 NC_002947.3 2485406 2486764 D similar to GP:13194611; identified by sequence similarity; aminotransferase 2485406..2486764 Pseudomonas putida KT2440 1045040 NP_744330.1 CDS PP_2181 NC_002947.3 2486948 2487502 D identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 2486948..2487502 Pseudomonas putida KT2440 1045041 NP_744331.1 CDS PP_2182 NC_002947.3 2487626 2488141 D similar to GP:9948644; identified by sequence similarity; ProQ activator of osmoprotectant transporter ProP 2487626..2488141 Pseudomonas putida KT2440 1045043 NP_744332.1 CDS PP_2183 NC_002947.3 2488543 2489025 D catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 2488543..2489025 Pseudomonas putida KT2440 1045044 NP_744333.1 CDS PP_2184 NC_002947.3 2489001 2490578 D similar to GP:3724144, and GP:3724144; identified by sequence similarity; NADH dehydrogenase (quinone) 2489001..2490578 Pseudomonas putida KT2440 1045045 NP_744334.1 CDS PP_2185 NC_002947.3 2490575 2493457 D similar to GP:17743211; identified by sequence similarity; formate dehydrogenase subunit alpha 2490575..2493457 Pseudomonas putida KT2440 1045046 NP_744335.1 CDS PP_2186 NC_002947.3 2493454 2493657 D similar to GP:3724147, and GP:3724147; identified by sequence similarity; formate dehydrogenase subunit delta 2493454..2493657 Pseudomonas putida KT2440 1045047 NP_744336.1 CDS PP_2187 NC_002947.3 2493771 2494634 R similar to SP:P03807; identified by sequence similarity; universal stress protein complement(2493771..2494634) Pseudomonas putida KT2440 1045048 NP_744337.1 CDS PP_2188 NC_002947.3 2494789 2495406 D similar to GB:M22404, PID:188866, GB:M22404, and PID:188866; identified by sequence similarity; tRNA--hydroxylase 2494789..2495406 Pseudomonas putida KT2440 1045049 NP_744338.1 CDS PP_2189 NC_002947.3 2495429 2495854 R similar to GP:9947261; identified by sequence similarity; hypothetical protein complement(2495429..2495854) Pseudomonas putida KT2440 1045050 NP_744339.1 CDS PP_2190 NC_002947.3 2495877 2496140 D similar to GP:9947967, and GP:9947967; identified by sequence similarity; hypothetical protein 2495877..2496140 Pseudomonas putida KT2440 1045051 NP_744340.1 CDS PP_2191 NC_002947.3 2496161 2496640 R lipoprotein complement(2496161..2496640) Pseudomonas putida KT2440 1045052 NP_744341.1 CDS PP_2192 NC_002947.3 2496772 2497896 D ECF subfamily RNA polymerase sigma factor 2496772..2497896 Pseudomonas putida KT2440 1045054 NP_744342.1 CDS PP_2193 NC_002947.3 2498097 2500550 D similar to GB:K00558, GB:S62639, SP:P04687, SP:P05215, PID:340019, PID:340021, and PID:37492; identified by sequence similarity; TonB-dependent siderophore receptor 2498097..2500550 Pseudomonas putida KT2440 1045055 NP_744343.1 CDS PP_2194 NC_002947.3 2500575 2501465 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2500575..2501465) Pseudomonas putida KT2440 1045058 NP_744344.1 CDS PP_2195 NC_002947.3 2501559 2502647 D identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 2501559..2502647 Pseudomonas putida KT2440 1045057 NP_744345.2 CDS speB NC_002947.3 2502673 2503638 D catalyzes the formation of putrescine from agmatine; agmatinase 2502673..2503638 Pseudomonas putida KT2440 1045059 NP_744346.1 CDS PP_2197 NC_002947.3 2503871 2504188 D hypothetical protein 2503871..2504188 Pseudomonas putida KT2440 1045060 NP_744347.1 CDS PP_2198 NC_002947.3 2504211 2505356 D glucose sorbosone dehydrogenase 2504211..2505356 Pseudomonas putida KT2440 1045061 NP_744348.1 CDS PP_2199 NC_002947.3 2505398 2506504 D identified by match to PFAM protein family HMM PF03969; AFG1 family ATPase 2505398..2506504 Pseudomonas putida KT2440 1045062 NP_744349.1 CDS PP_2200 NC_002947.3 2506518 2507099 D similar to GB:M24428, GB:M24429, GB:M24430, GB:M24431, GB:M24432, GB:M24433, GB:M24434, GB:M24435, GB:M24436, GB:M24437, GB:M24438, GB:M24439, GB:X14174, GB:S76738, SP:P05186, PID:178462, PID:28738, GB:M24428, GB:M24429, GB:M24430, GB:M24431, GB:M24432, GB:M24433, GB:M24434, GB:M24435, GB:M24436, GB:M24437, GB:M24438, GB:M24439, GB:X14174, GB:S76738, SP:P05186, PID:178462, and PID:28738; identified by sequence similarity; hypothetical protein 2506518..2507099 Pseudomonas putida KT2440 1045063 NP_744350.1 CDS PP_2201 NC_002947.3 2507172 2508170 R identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase complement(2507172..2508170) Pseudomonas putida KT2440 1045064 NP_744351.1 CDS PP_2202 NC_002947.3 2508246 2508683 R similar to GP:9948831; identified by sequence similarity; hypothetical protein complement(2508246..2508683) Pseudomonas putida KT2440 1045065 NP_744352.1 CDS PP_2203 NC_002947.3 2508683 2509111 R similar to GP:9950973, and GP:9950973; identified by sequence similarity; hypothetical protein complement(2508683..2509111) Pseudomonas putida KT2440 1045066 NP_744353.1 CDS PP_2204 NC_002947.3 2509126 2510010 R copper resistance protein B complement(2509126..2510010) Pseudomonas putida KT2440 1045067 NP_744354.1 CDS PP_2205 NC_002947.3 2510003 2511727 R similar to GB:X12901, GB:A07400, GB:X04657, GB:A14103, SP:P09327, PID:1247443, PID:37843, PID:37845, PID:412172, and PID:579563; identified by sequence similarity; CopA family copper resistance protein complement(2510003..2511727) Pseudomonas putida KT2440 1045068 NP_744355.1 CDS PP_2206 NC_002947.3 2511806 2513086 R identified by match to PFAM protein family HMM PF01136; U32 family peptidase complement(2511806..2513086) Pseudomonas putida KT2440 1045069 NP_744356.1 CDS PP_2207 NC_002947.3 2513273 2514337 D identified by match to PFAM protein family HMM PF01594; hypothetical protein 2513273..2514337 Pseudomonas putida KT2440 1045070 NP_744357.1 CDS phnX NC_002947.3 2514556 2515383 R catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase complement(2514556..2515383) Pseudomonas putida KT2440 1045071 NP_744358.1 CDS phnW NC_002947.3 2515418 2516524 R catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase complement(2515418..2516524) Pseudomonas putida KT2440 1045072 NP_744359.1 CDS PP_2210 NC_002947.3 2516637 2517500 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2516637..2517500 Pseudomonas putida KT2440 1045073 NP_744360.1 CDS PP_2211 NC_002947.3 2517578 2518600 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 2517578..2518600 Pseudomonas putida KT2440 1045074 NP_744361.1 CDS PP_2212 NC_002947.3 2518747 2523192 D identified by match to PFAM protein family HMM PF00560; hypothetical protein 2518747..2523192 Pseudomonas putida KT2440 1045075 NP_744362.1 CDS fadDx NC_002947.3 2523276 2524961 D similar to GP:13310126; identified by sequence similarity; AMP-dependent synthetase/ligase 2523276..2524961 Pseudomonas putida KT2440 1045076 NP_744363.1 CDS fadB2x NC_002947.3 2524975 2525742 D similar to GP:9948613, and GP:13310127; identified by sequence similarity; short-chain dehydrogenase/reductase SDR 2524975..2525742 Pseudomonas putida KT2440 1045077 NP_744364.1 CDS fadAx NC_002947.3 2525754 2526947 D similar to GP:13310128; identified by sequence similarity; acetyl-CoA acetyltransferase 2525754..2526947 Pseudomonas putida KT2440 1045080 NP_744365.1 CDS PP_2216 NC_002947.3 2526956 2528083 D identified by match to PFAM protein family HMM PF02770; acyl-CoA dehydrogenase 2526956..2528083 Pseudomonas putida KT2440 1045081 NP_744366.1 CDS fadB1x NC_002947.3 2528097 2528870 D similar to SP:Q52995, and GP:13310130; identified by sequence similarity; enoyl-CoA hydratase 2528097..2528870 Pseudomonas putida KT2440 1045082 NP_744367.1 CDS PP_2218 NC_002947.3 2529277 2530578 D identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2529277..2530578 Pseudomonas putida KT2440 1045083 NP_744368.1 CDS PP_2219 NC_002947.3 2530759 2531127 D hypothetical protein 2530759..2531127 Pseudomonas putida KT2440 1045084 NP_744369.1 CDS PP_2220 NC_002947.3 2531163 2531567 D identified by match to PFAM protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 2531163..2531567 Pseudomonas putida KT2440 1045085 NP_744370.1 CDS PP_2221 NC_002947.3 2531576 2531746 D hypothetical protein 2531576..2531746 Pseudomonas putida KT2440 1045086 NP_744371.1 CDS PP_2222 NC_002947.3 2531743 2531940 D hypothetical protein 2531743..2531940 Pseudomonas putida KT2440 1045087 NP_744372.1 CDS PP_2223 NC_002947.3 2532226 2532756 D hypothetical protein 2532226..2532756 Pseudomonas putida KT2440 1045088 NP_744373.1 CDS PP_2224 NC_002947.3 2532753 2532965 D similar to GP:9947967, and GP:9947967; identified by sequence similarity; hypothetical protein 2532753..2532965 Pseudomonas putida KT2440 1045090 NP_744374.1 CDS PP_2225 NC_002947.3 2532978 2533343 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit G complement(2532978..2533343) Pseudomonas putida KT2440 1045091 NP_744375.1 CDS PP_2226 NC_002947.3 2533340 2533618 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F complement(2533340..2533618) Pseudomonas putida KT2440 1045093 NP_744376.1 CDS PP_2227 NC_002947.3 2533615 2534103 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E complement(2533615..2534103) Pseudomonas putida KT2440 1045094 NP_744377.1 CDS PP_2228 NC_002947.3 2534100 2535779 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(2534100..2535779) Pseudomonas putida KT2440 1045095 NP_744378.1 CDS PP_2229 NC_002947.3 2535776 2536120 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(2535776..2536120) Pseudomonas putida KT2440 1045096 NP_744379.1 CDS PP_2230 NC_002947.3 2536120 2539035 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A complement(2536120..2539035) Pseudomonas putida KT2440 1045097 NP_744380.1 CDS PP_2231 NC_002947.3 2539186 2540262 R identified by match to PFAM protein family HMM PF00892; hypothetical protein complement(2539186..2540262) Pseudomonas putida KT2440 1045104 NP_744381.1 CDS PP_2232 NC_002947.3 2540251 2540784 D similar to GP:9947301; identified by sequence similarity; Cro/CI family transcriptional regulator 2540251..2540784 Pseudomonas putida KT2440 1045105 NP_744382.1 CDS PP_2233 NC_002947.3 2540833 2541381 R similar to SP:P00778; identified by sequence similarity; isochorismatase superfamily hydrolase complement(2540833..2541381) Pseudomonas putida KT2440 1045106 NP_744383.1 CDS PP_2234 NC_002947.3 2541464 2542456 D similar to GP:10178384; identified by sequence similarity; AraC family transcriptional regulator 2541464..2542456 Pseudomonas putida KT2440 1045107 NP_744384.1 CDS PP_2235 NC_002947.3 2542538 2542918 D identified by match to PFAM protein family HMM PF03992; hypothetical protein 2542538..2542918 Pseudomonas putida KT2440 1045108 NP_744385.1 CDS PP_2236 NC_002947.3 2542897 2543709 R identified by match to PFAM protein family HMM PF00326; prolyl oligopeptidase complement(2542897..2543709) Pseudomonas putida KT2440 1045111 NP_744386.1 CDS PP_2237 NC_002947.3 2543651 2544769 R identified by match to PFAM protein family HMM PF01366; hypothetical protein complement(2543651..2544769) Pseudomonas putida KT2440 1045113 NP_744387.1 CDS PP_2238 NC_002947.3 2544897 2546798 D identified by match to TIGR protein family HMM TIGR00500; peptidase M24 2544897..2546798 Pseudomonas putida KT2440 1045114 NP_744388.1 CDS PP_2239 NC_002947.3 2547311 2548198 R similar to GB:L07597, and PID:292457; identified by sequence similarity; cysteine transporter complement(2547311..2548198) Pseudomonas putida KT2440 1045115 NP_744389.1 CDS PP_2240 NC_002947.3 2554017 2555897 D similar to GB:Z25430, and PID:405739; identified by sequence similarity; ABC transporter 2554017..2555897 Pseudomonas putida KT2440 1045121 NP_744390.1 CDS PP_2241 NC_002947.3 2556108 2557364 R similar to GP:3758825; identified by sequence similarity; major facilitator family transporter complement(2556108..2557364) Pseudomonas putida KT2440 1045123 NP_744391.1 CDS fepA NC_002947.3 2557738 2559972 D Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2557738..2559972 Pseudomonas putida KT2440 1045124 NP_744392.1 CDS PP_2243 NC_002947.3 2560036 2560638 D similar to GP:3581840, and GP:3581840; identified by sequence similarity; phosphoglycerate mutase 2560036..2560638 Pseudomonas putida KT2440 1045127 NP_744393.1 CDS PP_2244 NC_002947.3 2560642 2561427 R similar to SP:P35852, PID:308866, SP:P35852, and PID:308866; identified by sequence similarity; hypothetical protein complement(2560642..2561427) Pseudomonas putida KT2440 1045128 NP_744394.1 CDS PP_2245 NC_002947.3 2561552 2562145 R identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator complement(2561552..2562145) Pseudomonas putida KT2440 1045129 NP_744395.1 CDS PP_2246 NC_002947.3 2562260 2563396 D similar to GP:9950041; identified by sequence similarity; FAD dependent oxidoreductase 2562260..2563396 Pseudomonas putida KT2440 1045130 NP_744396.1 CDS PP_2247 NC_002947.3 2563409 2563786 D identified by match to TIGR protein family HMM TIGR00004; endoribonuclease L-PSP 2563409..2563786 Pseudomonas putida KT2440 1045135 NP_744397.1 CDS PP_2248 NC_002947.3 2563899 2564963 D identified by match to TIGR protein family HMM TIGR00814; hypothetical protein 2563899..2564963 Pseudomonas putida KT2440 1045138 NP_744398.1 CDS PP_2249 NC_002947.3 2565017 2566948 R identified by match to PFAM protein family HMM PF02743; methyl-accepting chemotaxis transducer complement(2565017..2566948) Pseudomonas putida KT2440 1045136 NP_744399.1 CDS PP_2250 NC_002947.3 2567046 2567924 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2567046..2567924) Pseudomonas putida KT2440 1045140 NP_744400.1 CDS PP_2251 NC_002947.3 2568027 2568455 D similar to GP:9948836; identified by sequence similarity; transmembrane pair domain-containing protein 2568027..2568455 Pseudomonas putida KT2440 1045141 NP_744401.1 CDS PP_2252 NC_002947.3 2568495 2569544 R identified by match to PFAM protein family HMM PF00463; hypothetical protein complement(2568495..2569544) Pseudomonas putida KT2440 1045142 NP_744402.1 CDS PP_2253 NC_002947.3 2569696 2570364 R identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator complement(2569696..2570364) Pseudomonas putida KT2440 1045145 NP_744403.1 CDS PP_2254 NC_002947.3 2570381 2571079 R identified by match to TIGR protein family HMM TIGR01199; GntR family transcriptional regulator complement(2570381..2571079) Pseudomonas putida KT2440 1045146 NP_744404.1 CDS PP_2255 NC_002947.3 2571123 2572433 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(2571123..2572433) Pseudomonas putida KT2440 1045147 NP_744405.1 CDS PP_2256 NC_002947.3 2572661 2572975 R identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator complement(2572661..2572975) Pseudomonas putida KT2440 1045148 NP_744406.1 CDS aer-1 NC_002947.3 2573242 2574807 D similar to GP:4545127, and GP:4545127; identified by sequence similarity; aerotaxis receptor Aer-1 2573242..2574807 Pseudomonas putida KT2440 1045149 NP_744407.1 CDS PP_2258 NC_002947.3 2574821 2576509 D similar to GP:4545126; identified by sequence similarity; sensory box protein 2574821..2576509 Pseudomonas putida KT2440 1045151 NP_744408.1 CDS PP_2259 NC_002947.3 2576616 2578391 R identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator complement(2576616..2578391) Pseudomonas putida KT2440 1045152 NP_744409.1 CDS PP_2260 NC_002947.3 2578588 2579682 D similar to GB:D12589, SP:P30296, and PID:217073; identified by sequence similarity; sugar ABC transporter ATP-binding protein 2578588..2579682 Pseudomonas putida KT2440 1045153 NP_744410.1 CDS PP_2261 NC_002947.3 2579682 2580779 D identified by match to TIGR protein family HMM TIGR00968; sugar ABC transporter ATP-binding protein 2579682..2580779 Pseudomonas putida KT2440 1045154 NP_744411.1 CDS PP_2262 NC_002947.3 2580731 2581642 D similar to GB:X15162, SP:P00475, GB:V00272, GB:Z19601, and PID:1789789; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 2580731..2581642 Pseudomonas putida KT2440 1045155 NP_744412.1 CDS PP_2263 NC_002947.3 2581646 2582446 D similar to GP:9963816; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 2581646..2582446 Pseudomonas putida KT2440 1045156 NP_744413.1 CDS PP_2264 NC_002947.3 2582771 2584510 D similar to GP:2828820; identified by sequence similarity; ABC transporter substrate-binding protein 2582771..2584510 Pseudomonas putida KT2440 1045157 NP_744414.1 CDS folD-2 NC_002947.3 2584637 2585491 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2584637..2585491) Pseudomonas putida KT2440 1045158 NP_744415.1 CDS PP_2266 NC_002947.3 2586633 2589191 D similar to GB:M98835, SP:Q03314, and PID:152428; identified by sequence similarity; DNA-directed RNA polymerase, bacteriophage and mitochondrial type 2586633..2589191 Pseudomonas putida KT2440 1045161 NP_744416.1 CDS PP_2267 NC_002947.3 2589951 2590631 D similar to GP:6598999, and GP:6598999; identified by sequence similarity; phage single-stranded DNA-binding protein 2589951..2590631 Pseudomonas putida KT2440 1045163 NP_744417.1 CDS PP_2268 NC_002947.3 2590654 2591079 D similar to SP:P29015, GB:X69109, PID:42740, GB:U00096, PID:1549275, PID:1742736, PID:1742746, PID:1787952, SP:P29015, GB:X69109, PID:42740, GB:U00096, PID:1549275, PID:1742736, PID:1742746, and PID:1787952; identified by sequence similarity; phage endodeoxyribonuclease I 2590654..2591079 Pseudomonas putida KT2440 1045164 NP_744418.1 CDS PP_2269 NC_002947.3 2591082 2591531 D similar to GP:6599001; identified by sequence similarity; N-acetylmuramoyl-L-alanine amidase 2591082..2591531 Pseudomonas putida KT2440 1045165 NP_744419.1 CDS PP_2270 NC_002947.3 2591620 2593254 D similar to GP:6599004, and GP:6573521; identified by sequence similarity; DNA primase/helicase 2591620..2593254 Pseudomonas putida KT2440 1045167 NP_744420.1 CDS PP_2271 NC_002947.3 2593134 2594312 R hypothetical protein complement(2593134..2594312) Pseudomonas putida KT2440 1045168 NP_744421.1 CDS PP_2272 NC_002947.3 2594349 2594954 D hypothetical protein 2594349..2594954 Pseudomonas putida KT2440 1045170 NP_744422.1 CDS PP_2273 NC_002947.3 2595114 2597201 D similar to SP:P14899, and PID:2693; identified by sequence similarity; DNA polymerase 2595114..2597201 Pseudomonas putida KT2440 1045172 NP_744423.1 CDS PP_2274 NC_002947.3 2597215 2597430 D hypothetical protein 2597215..2597430 Pseudomonas putida KT2440 1045173 NP_744424.1 CDS PP_2275 NC_002947.3 2597465 2597674 D hypothetical protein 2597465..2597674 Pseudomonas putida KT2440 1045174 NP_744425.1 CDS PP_2276 NC_002947.3 2597776 2598375 D similar to GP:6599017, SP:Q01960, GB:X66445, PID:39919, and GB:AL009126; identified by sequence similarity; phage exonuclease 2597776..2598375 Pseudomonas putida KT2440 1045177 NP_744426.1 CDS PP_2277 NC_002947.3 2598659 2600044 D hypothetical protein 2598659..2600044 Pseudomonas putida KT2440 1045178 NP_744427.1 CDS PP_2278 NC_002947.3 2600099 2600293 D hypothetical protein 2600099..2600293 Pseudomonas putida KT2440 1045179 NP_744428.1 CDS PP_2279 NC_002947.3 2600521 2602095 D similar to SP:P06194, GB:X02604, PID:43773, SP:Q01960, GB:X66445, PID:39919, and GB:AL009126; identified by sequence similarity; head-to-tail joining protein 2600521..2602095 Pseudomonas putida KT2440 1045180 NP_744429.1 CDS PP_2280 NC_002947.3 2602073 2602234 D hypothetical protein 2602073..2602234 Pseudomonas putida KT2440 1045181 NP_744430.1 CDS PP_2281 NC_002947.3 2602234 2603013 D similar to GP:6599024; identified by sequence similarity; capsid assembly protein 2602234..2603013 Pseudomonas putida KT2440 1045183 NP_744431.1 CDS PP_2282 NC_002947.3 2603867 2604835 D similar to SP:P24323, GB:X57315, PID:1573319, SP:P24323, GB:X57315, and PID:1573319; identified by sequence similarity; minor capsid protein 10 2603867..2604835 Pseudomonas putida KT2440 1045185 NP_744432.1 CDS PP_2283 NC_002947.3 2604897 2605484 D similar to SP:P32042; identified by sequence similarity; tail tubular protein A 2604897..2605484 Pseudomonas putida KT2440 1045186 NP_744433.1 CDS PP_2284 NC_002947.3 2605488 2607833 D similar to SP:P32042; identified by sequence similarity; tail tubular protein B 2605488..2607833 Pseudomonas putida KT2440 1045191 NP_744434.1 CDS PP_2285 NC_002947.3 2608287 2608847 D hypothetical protein 2608287..2608847 Pseudomonas putida KT2440 1045194 NP_744435.1 CDS PP_2286 NC_002947.3 2608857 2611046 D similar to GP:6599032; identified by sequence similarity; hypothetical protein 2608857..2611046 Pseudomonas putida KT2440 1045196 NP_744436.1 CDS PP_2287 NC_002947.3 2611059 2615768 D similar to GP:6599033; identified by sequence similarity; phage internal core protein 2611059..2615768 Pseudomonas putida KT2440 1045197 NP_744437.1 CDS PP_2288 NC_002947.3 2615831 2617471 D similar to GP:6599034; identified by sequence similarity; phage tail fiber protein 2615831..2617471 Pseudomonas putida KT2440 1045199 NP_744438.1 CDS PP_2289 NC_002947.3 2617471 2617974 D similar to GP:7523534, and GP:7523534; identified by sequence similarity; hypothetical protein 2617471..2617974 Pseudomonas putida KT2440 1045200 NP_744439.1 CDS PP_2290 NC_002947.3 2618021 2618257 D hypothetical protein 2618021..2618257 Pseudomonas putida KT2440 1045228 NP_744440.1 CDS PP_2291 NC_002947.3 2618244 2618531 D hypothetical protein 2618244..2618531 Pseudomonas putida KT2440 1045270 NP_744441.1 CDS PP_2292 NC_002947.3 2618539 2619309 R hypothetical protein complement(2618539..2619309) Pseudomonas putida KT2440 1045271 NP_744442.1 CDS PP_2293 NC_002947.3 2619458 2621146 D similar to SP:P06524, GB:X02423, GB:X03933, GB:X16905, PID:154815, PID:39184, PID:39186, SP:P06524, GB:X02423, GB:X03933, GB:X16905, PID:154815, PID:39184, and PID:39186; identified by sequence similarity; DNA maturase B 2619458..2621146 Pseudomonas putida KT2440 1045272 NP_744443.1 CDS PP_2294 NC_002947.3 2621183 2621623 D hypothetical protein 2621183..2621623 Pseudomonas putida KT2440 1045273 NP_744444.1 CDS PP_2295 NC_002947.3 2623407 2623991 D similar to GP:5834745, GB:M32103, SP:P16644, and PID:153035; identified by sequence similarity; antirestriction protein 2623407..2623991 Pseudomonas putida KT2440 1045274 NP_744445.1 CDS PP_2296 NC_002947.3 2624406 2624762 D hypothetical protein 2624406..2624762 Pseudomonas putida KT2440 1045275 NP_744446.1 CDS PP_2297 NC_002947.3 2624995 2625819 D similar to GP:6166382; identified by sequence similarity; integrative genetic element Ppu40, integrase 2624995..2625819 Pseudomonas putida KT2440 1045276 NP_744447.1 CDS PP_2298 NC_002947.3 2626344 2626682 D similar to GP:7292196; identified by sequence similarity; hypothetical protein 2626344..2626682 Pseudomonas putida KT2440 1045277 NP_744448.1 CDS tig NC_002947.3 2626913 2628244 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2626913..2628244 Pseudomonas putida KT2440 1045278 NP_744449.1 CDS clpP NC_002947.3 2628336 2628977 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2628336..2628977 Pseudomonas putida KT2440 1045280 NP_744450.1 CDS clpX NC_002947.3 2629041 2630369 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2629041..2630369 Pseudomonas putida KT2440 1045282 NP_744451.1 CDS lon-2 NC_002947.3 2630533 2632929 D identified by match to PFAM protein family HMM PF00004; ATP-dependent protease La 2630533..2632929 Pseudomonas putida KT2440 1045283 NP_744452.1 CDS hupB NC_002947.3 2633082 2633354 D similar to SP:P05384; identified by sequence similarity; histone family protein DNA-binding protein 2633082..2633354 Pseudomonas putida KT2440 1045286 NP_744453.1 CDS PP_2304 NC_002947.3 2633536 2635407 D similar to SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; PpiC-type peptidyl-prolyl cis-trans isomerase 2633536..2635407 Pseudomonas putida KT2440 1045287 NP_744454.1 CDS PP_2305 NC_002947.3 2635524 2636570 R similar to GP:9947608; identified by sequence similarity; patatin complement(2635524..2636570) Pseudomonas putida KT2440 1045288 NP_744455.1 CDS PP_2306 NC_002947.3 2636742 2637020 D lipoprotein 2636742..2637020 Pseudomonas putida KT2440 1045289 NP_744456.1 CDS PP_2307 NC_002947.3 2637035 2637814 D CHAD domain-containing protein 2637035..2637814 Pseudomonas putida KT2440 1045292 NP_744457.1 CDS PP_2308 NC_002947.3 2637892 2638689 D identified by match to PFAM protein family HMM PF02551; acyl-CoA thioesterase 2637892..2638689 Pseudomonas putida KT2440 1045294 NP_744458.1 CDS PP_2309 NC_002947.3 2638731 2639099 R similar to GP:9948957, and GP:9948957; identified by sequence similarity; hypothetical protein complement(2638731..2639099) Pseudomonas putida KT2440 1045295 NP_744459.1 CDS PP_2310 NC_002947.3 2639175 2640653 R similar to GP:9948956; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer complement(2639175..2640653) Pseudomonas putida KT2440 1045297 NP_744460.1 CDS PP_2311 NC_002947.3 2640780 2641577 R similar to SP:P27859; identified by sequence similarity; TatD family hydrolase complement(2640780..2641577) Pseudomonas putida KT2440 1045298 NP_744461.1 CDS PP_2312 NC_002947.3 2641735 2643141 D identified by match to PFAM protein family HMM PF00497; lytic transglycosylase 2641735..2643141 Pseudomonas putida KT2440 1045301 NP_744462.1 CDS PP_2313 NC_002947.3 2643254 2643691 D identified by match to PFAM protein family HMM PF04173; DoxX family protein 2643254..2643691 Pseudomonas putida KT2440 1045302 NP_744463.1 CDS PP_2314 NC_002947.3 2643940 2644248 D similar to GP:9948948; identified by sequence similarity; hypothetical protein 2643940..2644248 Pseudomonas putida KT2440 1045303 NP_744464.1 CDS greB NC_002947.3 2644260 2644748 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 2644260..2644748 Pseudomonas putida KT2440 1045305 NP_744465.1 CDS PP_2316 NC_002947.3 2644812 2647310 R similar to GP:9948946; identified by sequence similarity; hypothetical protein complement(2644812..2647310) Pseudomonas putida KT2440 1045306 NP_744466.1 CDS PP_2317 NC_002947.3 2647316 2648002 R identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein complement(2647316..2648002) Pseudomonas putida KT2440 1045307 NP_744467.1 CDS PP_2318 NC_002947.3 2648013 2648618 D identified by match to PFAM protein family HMM PF00657; GDSL family lipase 2648013..2648618 Pseudomonas putida KT2440 1045311 NP_744468.1 CDS PP_2319 NC_002947.3 2648647 2648967 D similar to GP:9948943; identified by sequence similarity; hypothetical protein 2648647..2648967 Pseudomonas putida KT2440 1045312 NP_744469.1 CDS PP_2320 NC_002947.3 2649081 2650058 D identified by match to PFAM protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 2649081..2650058 Pseudomonas putida KT2440 1045313 NP_744470.1 CDS PP_2321 NC_002947.3 2650090 2650185 D hypothetical protein 2650090..2650185 Pseudomonas putida KT2440 1045314 NP_744471.1 CDS oprI NC_002947.3 2650192 2650443 R similar to GP:3201890, and SP:P11221; identified by sequence similarity; outer membrane lipoprotein OprI complement(2650192..2650443) Pseudomonas putida KT2440 1045315 NP_744472.1 CDS PP_2323 NC_002947.3 2650801 2651232 D similar to GP:9947727; identified by sequence similarity; hypothetical protein 2650801..2651232 Pseudomonas putida KT2440 1045316 NP_744473.1 CDS aroF-1 NC_002947.3 2651302 2652414 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2651302..2652414) Pseudomonas putida KT2440 1045317 NP_744474.1 CDS PP_2325 NC_002947.3 2652611 2653558 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2652611..2653558 Pseudomonas putida KT2440 1045318 NP_744475.1 CDS PP_2326 NC_002947.3 2653683 2654180 D identified by match to PFAM protein family HMM PF00582; universal stress protein 2653683..2654180 Pseudomonas putida KT2440 1045319 NP_744476.1 CDS cysB NC_002947.3 2654309 2655283 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2654309..2655283 Pseudomonas putida KT2440 1045321 NP_744477.1 CDS cysH NC_002947.3 2655453 2656187 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(2655453..2656187) Pseudomonas putida KT2440 1045322 NP_744478.1 CDS pabB NC_002947.3 2656268 2657608 R catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase subunit I complement(2656268..2657608) Pseudomonas putida KT2440 1045323 NP_744479.1 CDS PP_2330 NC_002947.3 2657817 2658797 R alpha-L-glutamate ligase complement(2657817..2658797) Pseudomonas putida KT2440 1045324 NP_744480.1 CDS PP_2331 NC_002947.3 2658797 2660332 R identified by match to PFAM protein family HMM PF04093; hypothetical protein complement(2658797..2660332) Pseudomonas putida KT2440 1045326 NP_744481.1 CDS PP_2332 NC_002947.3 2660338 2660874 R similar to GP:9947747; identified by sequence similarity; hypothetical protein complement(2660338..2660874) Pseudomonas putida KT2440 1045327 NP_744482.1 CDS PP_2333 NC_002947.3 2661181 2661897 D identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 2661181..2661897 Pseudomonas putida KT2440 1045328 NP_744483.1 CDS prpB NC_002947.3 2661894 2662784 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2661894..2662784 Pseudomonas putida KT2440 1045329 NP_744484.1 CDS PP_2335 NC_002947.3 2662845 2663972 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 2662845..2663972 Pseudomonas putida KT2440 1045332 NP_744485.1 CDS PP_2336 NC_002947.3 2664135 2666723 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2664135..2666723 Pseudomonas putida KT2440 1045334 NP_744486.1 CDS PP_2337 NC_002947.3 2666789 2667979 D identified by match to PFAM protein family HMM PF04303; hypothetical protein 2666789..2667979 Pseudomonas putida KT2440 1045336 NP_744487.1 CDS prpD NC_002947.3 2668146 2669630 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 2668146..2669630 Pseudomonas putida KT2440 1045337 NP_744488.1 CDS acnB NC_002947.3 2669705 2672314 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(2669705..2672314) Pseudomonas putida KT2440 1045338 NP_744489.1 CDS PP_2340 NC_002947.3 2672684 2673202 D hypothetical protein 2672684..2673202 Pseudomonas putida KT2440 1045339 NP_744490.1 CDS PP_2341 NC_002947.3 2673213 2673569 R similar to GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; 6-pyruvoyl tetrahydrobiopterin synthase complement(2673213..2673569) Pseudomonas putida KT2440 1045340 NP_744491.1 CDS PP_2342 NC_002947.3 2673829 2674023 R hypothetical protein complement(2673829..2674023) Pseudomonas putida KT2440 1045341 NP_744492.1 CDS PP_2343 NC_002947.3 2674015 2674746 D hypothetical protein 2674015..2674746 Pseudomonas putida KT2440 1045342 NP_744493.1 CDS PP_2344 NC_002947.3 2675052 2676131 R hypothetical protein complement(2675052..2676131) Pseudomonas putida KT2440 1045343 NP_744494.1 CDS PP_2345 NC_002947.3 2676369 2676677 D hypothetical protein 2676369..2676677 Pseudomonas putida KT2440 1045344 NP_744495.1 CDS PP_2346 NC_002947.3 2676677 2676991 D hypothetical protein 2676677..2676991 Pseudomonas putida KT2440 1045345 NP_744496.1 CDS PP_2347 NC_002947.3 2676992 2677660 D identified by match to TIGR protein family HMM TIGR01387; winged helix family two component transcriptional regulator 2676992..2677660 Pseudomonas putida KT2440 1045346 NP_744497.1 CDS PP_2348 NC_002947.3 2677657 2678976 D identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase 2677657..2678976 Pseudomonas putida KT2440 1045349 NP_744498.1 CDS PP_2349 NC_002947.3 2679257 2680411 D similar to GB:L11527, and PID:388363; identified by sequence similarity; hypothetical protein 2679257..2680411 Pseudomonas putida KT2440 1045351 NP_744499.1 CDS PP_2350 NC_002947.3 2680385 2681251 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2680385..2681251) Pseudomonas putida KT2440 1045354 NP_744500.1 CDS PP_2351 NC_002947.3 2681432 2683321 D similar to SP:P33905, PID:1163213, and PID:154813; identified by sequence similarity; acetyl-CoA synthetase 2681432..2683321 Pseudomonas putida KT2440 1045356 NP_744501.1 CDS PP_2352 NC_002947.3 2683434 2684561 R similar to GP:9950782; identified by sequence similarity; AFG1 family ATPase complement(2683434..2684561) Pseudomonas putida KT2440 1045360 NP_744502.1 CDS PP_2353 NC_002947.3 2684622 2684915 D hypothetical protein 2684622..2684915 Pseudomonas putida KT2440 1045363 NP_744503.1 CDS PP_2354 NC_002947.3 2685331 2687718 R similar to GP:5052340; identified by sequence similarity; multi-sensor hybrid histidine kinase complement(2685331..2687718) Pseudomonas putida KT2440 1045364 NP_744504.1 CDS PP_2355 NC_002947.3 2687732 2688193 R similar to SP:P33786, and PID:48912; identified by sequence similarity; response regulator receiver protein complement(2687732..2688193) Pseudomonas putida KT2440 1045380 NP_744505.1 CDS PP_2356 NC_002947.3 2688209 2690476 R similar to GP:6521382, and SP:Q9R6X3; identified by sequence similarity; phytochrome family protein complement(2688209..2690476) Pseudomonas putida KT2440 1045381 NP_744506.1 CDS PP_2357 NC_002947.3 2690658 2691251 D similar to GP:13649957; identified by sequence similarity; spore coat U domain-containing protein 2690658..2691251 Pseudomonas putida KT2440 1045382 NP_744507.1 CDS PP_2358 NC_002947.3 2691282 2691818 D similar to GP:13649956; identified by sequence similarity; spore coat U domain-containing protein 2691282..2691818 Pseudomonas putida KT2440 1045384 NP_744508.1 CDS PP_2359 NC_002947.3 2691837 2692370 D similar to GP:13649956; identified by sequence similarity; spore coat U domain-containing protein 2691837..2692370 Pseudomonas putida KT2440 1045386 NP_744509.1 CDS PP_2360 NC_002947.3 2692374 2692877 D similar to GP:13649957; identified by sequence similarity; spore coat U domain-containing protein 2692374..2692877 Pseudomonas putida KT2440 1045387 NP_744510.1 CDS csuC NC_002947.3 2692900 2693694 D identified by match to PFAM protein family HMM PF00345; type 1 pili usher pathway chaperone CsuC 2692900..2693694 Pseudomonas putida KT2440 1045389 NP_744511.1 CDS csuD NC_002947.3 2693707 2696100 D similar to GB:L10333, GB:L10334, GB:L10335, and PID:307311; identified by sequence similarity; fimbrial biogenesis outer membrane usher protein 2693707..2696100 Pseudomonas putida KT2440 1045390 NP_744512.1 CDS csuE NC_002947.3 2696097 2697068 D similar to GP:8895715, and GP:13649960; identified by sequence similarity; spore coat U domain-containing protein 2696097..2697068 Pseudomonas putida KT2440 1045391 NP_744513.1 CDS PP_2364 NC_002947.3 2697145 2698293 R identified by match to PFAM protein family HMM PF00246; hypothetical protein complement(2697145..2698293) Pseudomonas putida KT2440 1045392 NP_744514.1 CDS PP_2365 NC_002947.3 2698435 2699208 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(2698435..2699208) Pseudomonas putida KT2440 1045393 NP_744515.1 CDS PP_2366 NC_002947.3 2699245 2700507 R similar to GB:X64171, GB:L13470, GB:M31218, SP:P05543, PID:338697, PID:37142, PID:405514, GB:X64063, SP:P28765, and PID:1335662; identified by sequence similarity; antibiotic MFS transporter complement(2699245..2700507) Pseudomonas putida KT2440 1045394 NP_744516.1 CDS PP_2367 NC_002947.3 2700640 2701827 R similar to SP:P25156, GB:X59507, and PID:395159; identified by sequence similarity; major facilitator family transporter complement(2700640..2701827) Pseudomonas putida KT2440 1045396 NP_744517.1 CDS dkgB NC_002947.3 2701833 2702636 R catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B complement(2701833..2702636) Pseudomonas putida KT2440 1045398 NP_744518.1 CDS PP_2369 NC_002947.3 2702841 2707028 D identified by match to PFAM protein family HMM PF00560; hypothetical protein 2702841..2707028 Pseudomonas putida KT2440 1045399 NP_744519.1 CDS PP_2370 NC_002947.3 2707075 2707569 R hypothetical protein complement(2707075..2707569) Pseudomonas putida KT2440 1045400 NP_744520.1 CDS cysI NC_002947.3 2707553 2709205 R similar to GB:M22453, GB:J03912, GB:J05253, SP:P10745, PID:186541, PID:307074, PID:307075, PID:33961, and PID:386835; identified by sequence similarity; sulfite reductase hemoprotein subunit beta complement(2707553..2709205) Pseudomonas putida KT2440 1045402 NP_744521.1 CDS PP_2372 NC_002947.3 2709419 2710495 D similar to GB:D13638, and PID:285981; identified by sequence similarity; LacI family transcriptional regulator 2709419..2710495 Pseudomonas putida KT2440 1045403 NP_744522.1 CDS PP_2373 NC_002947.3 2710539 2710694 D hypothetical protein 2710539..2710694 Pseudomonas putida KT2440 1045404 NP_744523.1 CDS PP_2374 NC_002947.3 2711008 2711250 R hypothetical protein complement(2711008..2711250) Pseudomonas putida KT2440 1045406 NP_744524.1 CDS metH NC_002947.3 2711393 2715100 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(2711393..2715100) Pseudomonas putida KT2440 1045407 NP_744525.1 CDS cti NC_002947.3 2715283 2717583 D similar to GP:5257182, and GP:5257182; identified by sequence similarity; fatty acid cis/trans isomerase 2715283..2717583 Pseudomonas putida KT2440 1045408 NP_744526.1 CDS PP_2377 NC_002947.3 2717661 2718812 D similar to GP:5257179, and GP:5257179; identified by sequence similarity; acyltransferase 2717661..2718812 Pseudomonas putida KT2440 1045410 NP_744527.1 CDS yhgI NC_002947.3 2718871 2719455 D similar to GB:M68840, GB:X60819, SP:P21397, PID:187351, PID:187353, and PID:187355; identified by sequence similarity; hypothetical protein 2718871..2719455 Pseudomonas putida KT2440 1045411 NP_744528.1 CDS PP_2379 NC_002947.3 2719589 2720260 D similar to GP:3298363, SP:P04127, GB:X02921, SP:P02972, SP:P04740, GB:M68060, and GB:X03391; identified by sequence similarity; electron transport protein SCO1/SenC 2719589..2720260 Pseudomonas putida KT2440 1045412 NP_744529.1 CDS PP_2380 NC_002947.3 2720261 2720743 D similar to GB:D13178, SP:Q08751, PID:398125, GB:D13178, SP:Q08751, and PID:398125; identified by sequence similarity; hypothetical protein 2720261..2720743 Pseudomonas putida KT2440 1045413 NP_744530.1 CDS PP_2381 NC_002947.3 2720793 2721035 R hypothetical protein complement(2720793..2721035) Pseudomonas putida KT2440 1045414 NP_744531.1 CDS PP_2382 NC_002947.3 2721390 2722694 D similar to GB:M11189, SP:P04190, SP:P14488, and PID:142604; identified by sequence similarity; transporter 2721390..2722694 Pseudomonas putida KT2440 1045415 NP_744532.1 CDS PP_2383 NC_002947.3 2722743 2723588 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(2722743..2723588) Pseudomonas putida KT2440 1045416 NP_744533.1 CDS PP_2384 NC_002947.3 2723585 2723899 R branched chain amino acid ABC transporter complement(2723585..2723899) Pseudomonas putida KT2440 1045417 NP_744534.1 CDS azlC NC_002947.3 2723896 2724588 R identified by match to PFAM protein family HMM PF03591; AzlC family protein complement(2723896..2724588) Pseudomonas putida KT2440 1045418 NP_744535.1 CDS PP_2386 NC_002947.3 2724736 2725566 R hypothetical protein complement(2724736..2725566) Pseudomonas putida KT2440 1045420 NP_744536.1 CDS PP_2387 NC_002947.3 2725570 2726652 R hypothetical protein complement(2725570..2726652) Pseudomonas putida KT2440 1045421 NP_744537.1 CDS PP_2388 NC_002947.3 2726692 2727318 R similar to GB:M60854, SP:P17008, and PID:338447; identified by sequence similarity; amino acid transporter LysE complement(2726692..2727318) Pseudomonas putida KT2440 1045423 NP_744538.1 CDS PP_2389 NC_002947.3 2727321 2728109 R similar to GB:L09706, GB:L09707, GB:L09708, GB:X04481, GB:M15549, SP:P06681, PID:187765, PID:2347131, PID:298124, PID:34628, PID:467309, and PID:553209; identified by sequence similarity; hypothetical protein complement(2727321..2728109) Pseudomonas putida KT2440 1045425 NP_744539.1 CDS PP_2390 NC_002947.3 2728270 2729190 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2728270..2729190 Pseudomonas putida KT2440 1045426 NP_744540.1 CDS PP_2392 NC_002947.3 2729392 2730594 D identified by match to PFAM protein family HMM PF04284; major facilitator family transporter 2729392..2730594 Pseudomonas putida KT2440 1045428 NP_744541.1 CDS polB NC_002947.3 2730661 2733021 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2730661..2733021 Pseudomonas putida KT2440 1045429 NP_744542.1 CDS PP_2394 NC_002947.3 2733100 2737521 D identified by match to PFAM protein family HMM PF00560; hypothetical protein 2733100..2737521 Pseudomonas putida KT2440 1045430 NP_744543.1 CDS PP_2395 NC_002947.3 2737619 2742112 D identified by match to PFAM protein family HMM PF00560; hypothetical protein 2737619..2742112 Pseudomonas putida KT2440 1045431 NP_744544.1 CDS PP_2396 NC_002947.3 2742311 2742892 D hypothetical protein 2742311..2742892 Pseudomonas putida KT2440 1045432 NP_744545.1 CDS PP_2397 NC_002947.3 2742902 2743558 D identified by match to PFAM protein family HMM PF00036; EF hand domain-containing protein 2742902..2743558 Pseudomonas putida KT2440 1045434 NP_744546.1 CDS PP_2398 NC_002947.3 2743633 2744466 D hypothetical protein 2743633..2744466 Pseudomonas putida KT2440 1045435 NP_744547.1 CDS PP_2399 NC_002947.3 2744459 2745154 D hypothetical protein 2744459..2745154 Pseudomonas putida KT2440 1045493 NP_744548.1 CDS PP_2400 NC_002947.3 2745189 2745677 R identified by match to PFAM protein family HMM PF04173; DoxX family protein complement(2745189..2745677) Pseudomonas putida KT2440 1045527 NP_744549.1 CDS PP_2401 NC_002947.3 2745692 2746309 R hypothetical protein complement(2745692..2746309) Pseudomonas putida KT2440 1045528 NP_744550.1 CDS PP_2402 NC_002947.3 2746479 2747765 R identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase complement(2746479..2747765) Pseudomonas putida KT2440 1045529 NP_744551.1 CDS ompR-2 NC_002947.3 2747762 2748502 R identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator complement(2747762..2748502) Pseudomonas putida KT2440 1045530 NP_744552.1 CDS PP_2404 NC_002947.3 2748723 2748998 D hypothetical protein 2748723..2748998 Pseudomonas putida KT2440 1045531 NP_744553.1 CDS PP_2405 NC_002947.3 2748988 2749524 D similar to GP:10175285, GB:M76125, GB:S65125, GB:X57019, GB:X66029, GB:X66030, SP:P30530, PID:37593, and PID:37595; identified by sequence similarity; redoxin domain-containing protein 2748988..2749524 Pseudomonas putida KT2440 1045532 NP_744554.1 CDS aroE NC_002947.3 2749638 2750486 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(2749638..2750486) Pseudomonas putida KT2440 1045533 NP_744555.1 CDS aroQ-2 NC_002947.3 2750483 2750932 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2750483..2750932) Pseudomonas putida KT2440 1045534 NP_744556.1 CDS PP_2408 NC_002947.3 2751171 2752448 D similar to SP:P13509; identified by sequence similarity; cobalt-zinc-cadmium resistance protein CzcC 2751171..2752448 Pseudomonas putida KT2440 1045535 NP_744557.1 CDS PP_2409 NC_002947.3 2752441 2753655 D identified by match to TIGR protein family HMM TIGR01730; cobalt-zinc-cadmium resistance protein CzcB 2752441..2753655 Pseudomonas putida KT2440 1045536 NP_744558.1 CDS PP_2410 NC_002947.3 2753672 2756818 D identified by match to PFAM protein family HMM PF04295; cobalt-zinc-cadmium resistance protein CzcA 2753672..2756818 Pseudomonas putida KT2440 1045537 NP_744559.1 CDS PP_2411 NC_002947.3 2756851 2758188 R similar to GP:8250606; identified by sequence similarity; major facilitator family transporter complement(2756851..2758188) Pseudomonas putida KT2440 1045538 NP_744560.1 CDS PP_2412 NC_002947.3 2758369 2759160 R identified by match to TIGR protein family HMM TIGR01007; ParA family protein complement(2758369..2759160) Pseudomonas putida KT2440 1045539 NP_744561.1 CDS PP_2413 NC_002947.3 2759305 2760939 R identified by match to PFAM protein family HMM PF00990; diguanylate cyclase complement(2759305..2760939) Pseudomonas putida KT2440 1045540 NP_744562.1 CDS PP_2414 NC_002947.3 2760936 2761415 R hypothetical protein complement(2760936..2761415) Pseudomonas putida KT2440 1045541 NP_744563.1 CDS PP_2415 NC_002947.3 2761414 2762046 D identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 2761414..2762046 Pseudomonas putida KT2440 1045542 NP_744564.1 CDS PP_2416 NC_002947.3 2762103 2762891 R similar to GP:8217385, GB:M18461, GB:S60788, PID:1552514, PID:339016, PID:575274, and PID:930052; identified by sequence similarity; iron ABC transporter ATP-binding protein complement(2762103..2762891) Pseudomonas putida KT2440 1045543 NP_744565.1 CDS PP_2417 NC_002947.3 2762888 2763907 R similar to GP:8546927; identified by sequence similarity; transport system permease complement(2762888..2763907) Pseudomonas putida KT2440 1045544 NP_744566.1 CDS PP_2418 NC_002947.3 2763904 2764998 R similar to GP:11071205; identified by sequence similarity; hypothetical protein complement(2763904..2764998) Pseudomonas putida KT2440 1045545 NP_744567.1 CDS PP_2419 NC_002947.3 2765252 2766517 R similar to GP:9951108; identified by sequence similarity; hypothetical protein complement(2765252..2766517) Pseudomonas putida KT2440 1045546 NP_744568.1 CDS PP_2420 NC_002947.3 2766530 2768716 R similar to GB:M13295, GB:M13296, GB:M13297, GB:M13298, GB:M13299, SP:P03999, PID:180685, and PID:2138076; identified by sequence similarity; TonB-dependent siderophore receptor complement(2766530..2768716) Pseudomonas putida KT2440 1045547 NP_744569.1 CDS PP_2421 NC_002947.3 2769130 2769681 R similar to GB:X00264, SP:P01229, SP:P01233, and PID:2292893; identified by sequence similarity; acetyltransferase complement(2769130..2769681) Pseudomonas putida KT2440 1045548 NP_744570.1 CDS PP_2422 NC_002947.3 2769778 2770131 R similar to GB:J00128, GB:M58569, GB:M64982, GB:J00127, GB:K02272, GB:M26878, SP:P02671, GB:S82092, PID:182407, PID:182424, PID:182426, PID:182428, PID:458554, and PID:458555; identified by sequence similarity; alkylhydroperoxidase complement(2769778..2770131) Pseudomonas putida KT2440 1045549 NP_744571.1 CDS PP_2423 NC_002947.3 2770240 2771139 R hypothetical protein complement(2770240..2771139) Pseudomonas putida KT2440 1045550 NP_744572.1 CDS PP_2424 NC_002947.3 2771298 2771843 D similar to GP:9948949, and SP:P37025; identified by sequence similarity; 2'-5' RNA ligase 2771298..2771843 Pseudomonas putida KT2440 1045551 NP_744573.1 CDS PP_2425 NC_002947.3 2771907 2772812 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(2771907..2772812) Pseudomonas putida KT2440 1045552 NP_744574.1 CDS PP_2426 NC_002947.3 2772994 2774046 D identified by match to TIGR protein family HMM TIGR01751; D-isomer specific 2-hydroxyacid dehydrogenase 2772994..2774046 Pseudomonas putida KT2440 1045553 NP_744575.1 CDS PP_2427 NC_002947.3 2774213 2775316 D identified by match to PFAM protein family HMM PF03760; hypothetical protein 2774213..2775316 Pseudomonas putida KT2440 1045554 NP_744576.1 CDS PP_2428 NC_002947.3 2775651 2776877 D similar to GP:5777418; identified by sequence similarity; sugar efflux transporter 2775651..2776877 Pseudomonas putida KT2440 1045555 NP_744577.1 CDS PP_2429 NC_002947.3 2776917 2777501 R identified by match to PFAM protein family HMM PF04241; lysine exporter protein LysE/YggA complement(2776917..2777501) Pseudomonas putida KT2440 1045556 NP_744578.1 CDS PP_2430 NC_002947.3 2777552 2778382 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(2777552..2778382) Pseudomonas putida KT2440 1045557 NP_744579.1 CDS PP_2431 NC_002947.3 2778431 2779354 R similar to GP:9949718; identified by sequence similarity; LysR family transcriptional regulator complement(2778431..2779354) Pseudomonas putida KT2440 1045568 NP_744580.1 CDS PP_2432 NC_002947.3 2779458 2780111 D catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 2779458..2780111 Pseudomonas putida KT2440 1045601 NP_744581.1 CDS PP_2433 NC_002947.3 2780224 2780703 D hypothetical protein 2780224..2780703 Pseudomonas putida KT2440 1045602 NP_744582.1 CDS PP_2434 NC_002947.3 2780700 2781137 D similar to GP:10719750, and GP:10719750; identified by sequence similarity; RES domain-containing protein 2780700..2781137 Pseudomonas putida KT2440 1045603 NP_744583.1 CDS iscS-2 NC_002947.3 2781145 2782362 R similar to SP:P39171; identified by sequence similarity; cysteine desulfurase complement(2781145..2782362) Pseudomonas putida KT2440 1045604 NP_744584.1 CDS PP_2436 NC_002947.3 2782493 2783419 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2782493..2783419) Pseudomonas putida KT2440 1045605 NP_744585.1 CDS PP_2437 NC_002947.3 2783545 2784789 D identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 2783545..2784789 Pseudomonas putida KT2440 1045606 NP_744586.1 CDS PP_2438 NC_002947.3 2785601 2786665 R identified by match to PFAM protein family HMM PF03741; hypothetical protein complement(2785601..2786665) Pseudomonas putida KT2440 1045607 NP_744587.1 CDS ahpC NC_002947.3 2786987 2787550 D similar to GP:3298355, and SP:P26427; identified by sequence similarity; alkyl hydroperoxide reductase 2786987..2787550 Pseudomonas putida KT2440 1045608 NP_744588.1 CDS ahpF NC_002947.3 2787675 2789237 D similar to SP:O82864, GB:J02708, SP:P05705, PID:146278, GB:U00096, PID:1789054, and PID:1800088; identified by sequence similarity; alkyl hydroperoxide reductase 2787675..2789237 Pseudomonas putida KT2440 1045609 NP_744589.1 CDS PP_2441 NC_002947.3 2789299 2789592 D hypothetical protein 2789299..2789592 Pseudomonas putida KT2440 1045610 NP_744590.1 CDS PP_2442 NC_002947.3 2789597 2790244 R similar to GP:9949595; identified by sequence similarity; hypothetical protein complement(2789597..2790244) Pseudomonas putida KT2440 1045611 NP_744591.1 CDS PP_2443 NC_002947.3 2790333 2791544 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(2790333..2791544) Pseudomonas putida KT2440 1045612 NP_744592.1 CDS PP_2444 NC_002947.3 2791642 2792535 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2791642..2792535) Pseudomonas putida KT2440 1045613 NP_744593.1 CDS PP_2445 NC_002947.3 2792936 2793688 D similar to GB:X14975, GB:M14666, SP:P15812, PID:180052, PID:296640, PID:496891, and PID:496893; identified by sequence similarity; integral membrane protein TerC 2792936..2793688 Pseudomonas putida KT2440 1045614 NP_744594.1 CDS PP_2446 NC_002947.3 2793815 2794000 R identified by match to PFAM protein family HMM PF01654; hypothetical protein complement(2793815..2794000) Pseudomonas putida KT2440 1045615 NP_744595.1 CDS PP_2447 NC_002947.3 2794155 2794889 D similar to GP:9948859; identified by sequence similarity; hypothetical protein 2794155..2794889 Pseudomonas putida KT2440 1045616 NP_744596.1 CDS PP_2448 NC_002947.3 2795001 2796284 R identified by match to PFAM protein family HMM PF01593; FAD dependent oxidoreductase complement(2795001..2796284) Pseudomonas putida KT2440 1045617 NP_744597.1 CDS PP_2449 NC_002947.3 2796849 2797514 D sporulation domain-containing protein 2796849..2797514 Pseudomonas putida KT2440 1045618 NP_744598.1 CDS PP_2450 NC_002947.3 2797613 2798038 D similar to GP:10280523, and GP:10280523; identified by sequence similarity; hypothetical protein 2797613..2798038 Pseudomonas putida KT2440 1045619 NP_744599.1 CDS endA-1 NC_002947.3 2798042 2798734 R similar to GP:9948828, GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; deoxyribonuclease I complement(2798042..2798734) Pseudomonas putida KT2440 1045620 NP_744600.1 CDS PP_2452 NC_002947.3 2798741 2798983 R hypothetical protein complement(2798741..2798983) Pseudomonas putida KT2440 1045621 NP_744601.1 CDS ansA NC_002947.3 2799199 2800287 R similar to GP:2392795, and SP:P10182; identified by sequence similarity; type II L-asparaginase complement(2799199..2800287) Pseudomonas putida KT2440 1045622 NP_744602.1 CDS rbsB NC_002947.3 2800655 2801614 D similar to GB:M26061, SP:P16499, and PID:2366987; identified by sequence similarity; monosaccharide-transporting ATPase 2800655..2801614 Pseudomonas putida KT2440 1045623 NP_744603.1 CDS rbsA NC_002947.3 2801614 2803188 D similar to GB:L08239, and PID:950412; identified by sequence similarity; ribose ABC transporter ATP-binding protein 2801614..2803188 Pseudomonas putida KT2440 1045624 NP_744604.1 CDS rbsC NC_002947.3 2803185 2804180 D identified by match to PFAM protein family HMM PF02653; monosaccharide-transporting ATPase 2803185..2804180 Pseudomonas putida KT2440 1045625 NP_744605.1 CDS rbsR NC_002947.3 2804185 2805207 D identified by match to TIGR protein family HMM TIGR01481; ribose operon repressor 2804185..2805207 Pseudomonas putida KT2440 1045626 NP_744606.1 CDS rbsK NC_002947.3 2805223 2806131 D similar to GB:M77016, SP:P28289, and PID:339948; identified by sequence similarity; ribokinase 2805223..2806131 Pseudomonas putida KT2440 1045627 NP_744607.1 CDS PP_2459 NC_002947.3 2806128 2806526 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 2806128..2806526 Pseudomonas putida KT2440 1045628 NP_744608.1 CDS PP_2460 NC_002947.3 2806624 2807592 D identified by match to PFAM protein family HMM PF01156; inosine/uridine-preferring nucleoside hydrolase 2806624..2807592 Pseudomonas putida KT2440 1045629 NP_744609.1 CDS PP_2461 NC_002947.3 2807564 2807776 R hypothetical protein complement(2807564..2807776) Pseudomonas putida KT2440 1045630 NP_744610.1 CDS PP_2462 NC_002947.3 2807997 2808371 D similar to GP:9947968, and GP:9947968; identified by sequence similarity; hypothetical protein 2807997..2808371 Pseudomonas putida KT2440 1045631 NP_744611.1 CDS cspA-2 NC_002947.3 2808572 2808784 R similar to GB:M84993, SP:P26462, GB:X52093, PID:154021, SP:P31667, PID:606346, GB:U00096, and PID:1789816; identified by sequence similarity; cold shock protein CspA complement(2808572..2808784) Pseudomonas putida KT2440 1045632 NP_744612.1 CDS PP_2464 NC_002947.3 2808902 2809291 D hypothetical protein 2808902..2809291 Pseudomonas putida KT2440 1045633 NP_744613.1 CDS thrS NC_002947.3 2809591 2811513 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2809591..2811513 Pseudomonas putida KT2440 1045634 NP_744614.1 CDS infC NC_002947.3 2811531 2812064 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2811531..2812064 Pseudomonas putida KT2440 1045635 NP_744615.2 CDS rpmI NC_002947.3 2812125 2812319 D identified by match to PFAM protein family HMM PF01632; 50S ribosomal protein L35 2812125..2812319 Pseudomonas putida KT2440 1045636 NP_744616.1 CDS rplT NC_002947.3 2812347 2812703 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2812347..2812703 Pseudomonas putida KT2440 1045637 NP_744617.1 CDS pheS NC_002947.3 2812813 2813829 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2812813..2813829 Pseudomonas putida KT2440 1045638 NP_744618.1 CDS pheT NC_002947.3 2813861 2816242 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2813861..2816242 Pseudomonas putida KT2440 1045639 NP_744619.1 CDS ihfA NC_002947.3 2816247 2816549 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2816247..2816549 Pseudomonas putida KT2440 1045640 NP_744620.1 CDS PP_2472 NC_002947.3 2816530 2816886 D identified by match to PFAM protein family HMM PF00376; hypothetical protein 2816530..2816886 Pseudomonas putida KT2440 1045641 NP_744621.1 CDS PP_2473 NC_002947.3 2819189 2820196 D hypothetical protein 2819189..2820196 Pseudomonas putida KT2440 1045642 NP_744622.1 CDS PP_2474 NC_002947.3 2820708 2821328 R similar to GP:8037803, and GP:8037803; identified by sequence similarity; glutathione S-transferase complement(2820708..2821328) Pseudomonas putida KT2440 1045643 NP_744623.1 CDS PP_2475 NC_002947.3 2821719 2822312 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 2821719..2822312 Pseudomonas putida KT2440 1045644 NP_744624.1 CDS PP_2476 NC_002947.3 2822425 2823459 D identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 2822425..2823459 Pseudomonas putida KT2440 1045645 NP_744625.1 CDS PP_2477 NC_002947.3 2823922 2824383 D similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; isoquinoline 1-oxidoreductase subunit alpha 2823922..2824383 Pseudomonas putida KT2440 1045646 NP_744626.1 CDS PP_2478 NC_002947.3 2824385 2826577 D similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; isoquinoline 1-oxidoreductase subunit beta 2824385..2826577 Pseudomonas putida KT2440 1045647 NP_744627.1 CDS PP_2479 NC_002947.3 2826585 2827808 D similar to GP:6648631; identified by sequence similarity; cytochrome c family protein 2826585..2827808 Pseudomonas putida KT2440 1045648 NP_744628.1 CDS PP_2480 NC_002947.3 2827822 2829030 D similar to SP:P33383, and SP:P33383; identified by sequence similarity; xanthine dehydrogenase accessory factor 2827822..2829030 Pseudomonas putida KT2440 1045649 NP_744629.1 CDS PP_2481 NC_002947.3 2829059 2829397 D identified by match to PFAM protein family HMM PF02619; hypothetical protein 2829059..2829397 Pseudomonas putida KT2440 1045650 NP_744630.1 CDS PP_2482 NC_002947.3 2829394 2830362 D similar to GB:X64364, GB:L10240, GB:D45131, SP:P35613, PID:1209374, PID:1220307, PID:34449, PID:409357, PID:633069, GB:X06614, GB:S57794, SP:P10276, PID:1335286, PID:35874, PID:36157, and PID:825712; identified by sequence similarity; molybdenum cofactor biosynthesis protein A 2829394..2830362 Pseudomonas putida KT2440 1045651 NP_744631.1 CDS PP_2483 NC_002947.3 2830340 2830939 R similar to GP:6273649; identified by sequence similarity; hypothetical protein complement(2830340..2830939) Pseudomonas putida KT2440 1045652 NP_744632.1 CDS PP_2484 NC_002947.3 2831222 2831527 R identified by match to PFAM protein family HMM PF01022; ArsR family transcriptional regulator complement(2831222..2831527) Pseudomonas putida KT2440 1045653 NP_744633.1 CDS PP_2485 NC_002947.3 2831666 2832649 R identified by match to PFAM protein family HMM PF00296; hypothetical protein complement(2831666..2832649) Pseudomonas putida KT2440 1045654 NP_744634.1 CDS PP_2486 NC_002947.3 2832716 2833840 R identified by match to PFAM protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase complement(2832716..2833840) Pseudomonas putida KT2440 1045655 NP_744635.1 CDS PP_2487 NC_002947.3 2833903 2835414 R identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase complement(2833903..2835414) Pseudomonas putida KT2440 1045656 NP_744636.1 CDS PP_2488 NC_002947.3 2835654 2837045 R similar to GB:L04309, SP:Q07567, and PID:310375; identified by sequence similarity; succinic-semialdehyde dehydrogenase complement(2835654..2837045) Pseudomonas putida KT2440 1045657 NP_744637.1 CDS PP_2489 NC_002947.3 2837228 2838328 R similar to GP:6049281, and GP:6049281; identified by sequence similarity; xenobiotic reductase complement(2837228..2838328) Pseudomonas putida KT2440 1045658 NP_744638.1 CDS PP_2490 NC_002947.3 2838695 2839519 R similar to GP:11061573; identified by sequence similarity; nitroreductase complement(2838695..2839519) Pseudomonas putida KT2440 1045659 NP_744639.1 CDS PP_2491 NC_002947.3 2839901 2840578 R similar to GP:5002553; identified by sequence similarity; ThiJ/PfpI family protein complement(2839901..2840578) Pseudomonas putida KT2440 1045660 NP_744640.1 CDS PP_2492 NC_002947.3 2840661 2841818 R similar to GP:4378173; identified by sequence similarity; butanol dehydrogenase, NADH-dependent complement(2840661..2841818) Pseudomonas putida KT2440 1045661 NP_744641.1 CDS PP_2493 NC_002947.3 2842070 2842618 R identified by match to TIGR protein family HMM TIGR00608; RadC family protein complement(2842070..2842618) Pseudomonas putida KT2440 1045662 NP_744642.1 CDS PP_2494 NC_002947.3 2842590 2843591 R hypothetical protein complement(2842590..2843591) Pseudomonas putida KT2440 1045688 NP_744643.1 CDS PP_2495 NC_002947.3 2843633 2844637 R similar to GP:5823649, and GP:5823649; identified by sequence similarity; hypothetical protein complement(2843633..2844637) Pseudomonas putida KT2440 1045694 NP_744644.1 CDS PP_2496 NC_002947.3 2844717 2845745 R hypothetical protein complement(2844717..2845745) Pseudomonas putida KT2440 1045695 NP_744645.1 CDS PP_2497 NC_002947.3 2845783 2846112 R hypothetical protein complement(2845783..2846112) Pseudomonas putida KT2440 1045708 NP_744646.1 CDS PP_2498 NC_002947.3 2846317 2846562 D identified by match to TIGR protein family HMM TIGR01552; hypothetical protein 2846317..2846562 Pseudomonas putida KT2440 1045710 NP_744647.1 CDS PP_2499 NC_002947.3 2846687 2846959 D hypothetical protein 2846687..2846959 Pseudomonas putida KT2440 1045716 NP_744648.1 CDS PP_2500 NC_002947.3 2846947 2847240 D hypothetical protein 2846947..2847240 Pseudomonas putida KT2440 1045725 NP_744649.1 CDS PP_2501 NC_002947.3 2847234 2848643 R similar to PIR:A42465; identified by sequence similarity; phage integrase complement(2847234..2848643) Pseudomonas putida KT2440 1045727 NP_744650.1 CDS PP_2502 NC_002947.3 2849166 2850092 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2849166..2850092) Pseudomonas putida KT2440 1045728 NP_744651.1 CDS PP_2503 NC_002947.3 2850206 2850937 D similar to GP:10175111; identified by sequence similarity; 3-oxoacyl-ACP reductase 2850206..2850937 Pseudomonas putida KT2440 1045729 NP_744652.1 CDS dmpI NC_002947.3 2851007 2851216 D identified by match to PFAM protein family HMM PF01361; 4-oxalocrotonate tautomerase 2851007..2851216 Pseudomonas putida KT2440 1045731 NP_744653.1 CDS PP_2505 NC_002947.3 2852291 2853328 R identified by match to PFAM protein family HMM PF00990; GAF domain/GGDEF domain-containing protein complement(2852291..2853328) Pseudomonas putida KT2440 1045733 NP_744654.1 CDS PP_2506 NC_002947.3 2853646 2854185 D hypothetical protein 2853646..2854185 Pseudomonas putida KT2440 1045735 NP_744655.1 CDS PP_2507 NC_002947.3 2854231 2854947 D identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2854231..2854947 Pseudomonas putida KT2440 1045736 NP_744656.1 CDS PP_2508 NC_002947.3 2856131 2856340 D hypothetical protein 2856131..2856340 Pseudomonas putida KT2440 1045737 NP_744657.1 CDS PP_2509 NC_002947.3 2856564 2856728 R similar to GP:9187583; identified by sequence similarity; hypothetical protein complement(2856564..2856728) Pseudomonas putida KT2440 1045744 NP_744658.1 CDS PP_2510 NC_002947.3 2858387 2858641 R hypothetical protein complement(2858387..2858641) Pseudomonas putida KT2440 1045747 NP_744659.1 CDS PP_2511 NC_002947.3 2858767 2859180 D similar to GB:X15786, SP:P07949, PID:36009, GB:X15786, SP:P07949, and PID:36009; identified by sequence similarity; hypothetical protein 2858767..2859180 Pseudomonas putida KT2440 1045748 NP_744660.1 CDS folE NC_002947.3 2859165 2859725 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2859165..2859725 Pseudomonas putida KT2440 1045754 NP_744661.1 CDS PP_2513 NC_002947.3 2860243 2861328 R similar to GP:7573255, SP:P38487, PID:500611, and PID:840668; identified by sequence similarity; hypothetical protein complement(2860243..2861328) Pseudomonas putida KT2440 1045756 NP_744662.1 CDS PP_2514 NC_002947.3 2861331 2862047 R similar to GP:7573254; identified by sequence similarity; hypothetical protein complement(2861331..2862047) Pseudomonas putida KT2440 1045759 NP_744663.1 CDS PP_2515 NC_002947.3 2862044 2862820 R similar to GP:15074698; identified by sequence similarity; hypothetical protein complement(2862044..2862820) Pseudomonas putida KT2440 1045763 NP_744664.1 CDS PP_2516 NC_002947.3 2862938 2864131 D similar to GP:7573253; identified by sequence similarity; LysR family transcriptional regulator 2862938..2864131 Pseudomonas putida KT2440 1045766 NP_744665.1 CDS PP_2517 NC_002947.3 2864147 2865379 R identified by match to PFAM protein family HMM PF03573; BenF-like porin complement(2864147..2865379) Pseudomonas putida KT2440 1045767 NP_744666.2 CDS PP_2518 NC_002947.3 2865511 2866773 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase complement(2865511..2866773) Pseudomonas putida KT2440 1045771 NP_744667.1 CDS PP_2520 NC_002947.3 2868342 2868458 D hypothetical protein 2868342..2868458 Pseudomonas putida KT2440 1045774 NP_744668.1 CDS PP_2522 NC_002947.3 2869389 2870690 D identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 2869389..2870690 Pseudomonas putida KT2440 1045780 NP_744669.1 CDS PP_2524 NC_002947.3 2871220 2871876 D similar to GB:S61233, PID:385925, and GB:AE000666; identified by sequence similarity; HD domain-containing protein 2871220..2871876 Pseudomonas putida KT2440 1045784 NP_744670.1 CDS PP_2525 NC_002947.3 2871908 2873071 R identified by match to PFAM protein family HMM PF02463; hypothetical protein complement(2871908..2873071) Pseudomonas putida KT2440 1045785 NP_744671.1 CDS PP_2526 NC_002947.3 2873218 2873691 D hypothetical protein 2873218..2873691 Pseudomonas putida KT2440 1045787 NP_744672.1 CDS PP_2527 NC_002947.3 2873773 2874654 R identified by match to PFAM protein family HMM PF04284; hypothetical protein complement(2873773..2874654) Pseudomonas putida KT2440 1045796 NP_744673.1 CDS metY NC_002947.3 2874602 2875879 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(2874602..2875879) Pseudomonas putida KT2440 1045789 NP_744674.1 CDS PP_2529 NC_002947.3 2876004 2876261 D hypothetical protein 2876004..2876261 Pseudomonas putida KT2440 1045798 NP_744675.1 CDS PP_2530 NC_002947.3 2876100 2876357 R hypothetical protein complement(2876100..2876357) Pseudomonas putida KT2440 1045800 NP_744676.1 CDS PP_2531 NC_002947.3 2876376 2877371 R similar to GP:4902474; identified by sequence similarity; 5'-nucleotidase complement(2876376..2877371) Pseudomonas putida KT2440 1045801 NP_744677.1 CDS PP_2532 NC_002947.3 2877511 2877999 D hypothetical protein 2877511..2877999 Pseudomonas putida KT2440 1045809 NP_744678.1 CDS PP_2533 NC_002947.3 2878007 2879002 R identified by match to PFAM protein family HMM PF00389; D-isomer specific 2-hydroxyacid dehydrogenase complement(2878007..2879002) Pseudomonas putida KT2440 1045811 NP_744679.1 CDS PP_2534 NC_002947.3 2879162 2880061 R similar to GP:9949236; identified by sequence similarity; LysR family transcriptional regulator complement(2879162..2880061) Pseudomonas putida KT2440 1045812 NP_744680.1 CDS PP_2535 NC_002947.3 2880156 2881331 D similar to SP:P25156, GB:X59507, and PID:395159; identified by sequence similarity; major facilitator superfamily protein 2880156..2881331 Pseudomonas putida KT2440 1045813 NP_744681.1 CDS PP_2536 NC_002947.3 2881385 2882008 R identified by match to PFAM protein family HMM PF02798; glutathione S-transferase complement(2881385..2882008) Pseudomonas putida KT2440 1045815 NP_744682.1 CDS PP_2537 NC_002947.3 2882201 2882509 D hypothetical protein 2882201..2882509 Pseudomonas putida KT2440 1045817 NP_744683.1 CDS PP_2538 NC_002947.3 2882589 2883311 D hypothetical protein 2882589..2883311 Pseudomonas putida KT2440 1045818 NP_744684.1 CDS PP_2539 NC_002947.3 2883438 2884364 D similar to GP:9948229; identified by sequence similarity; LysR family transcriptional regulator 2883438..2884364 Pseudomonas putida KT2440 1045821 NP_744685.1 CDS PP_2540 NC_002947.3 2884533 2885309 D similar to GB:L08822, SP:P37947, PID:142836, and PID:1934840; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase 2884533..2885309 Pseudomonas putida KT2440 1045822 NP_744686.1 CDS PP_2541 NC_002947.3 2885321 2885875 R similar to GP:6642785; identified by sequence similarity; transcriptional factor-like protein complement(2885321..2885875) Pseudomonas putida KT2440 1045823 NP_744687.1 CDS PP_2542 NC_002947.3 2887241 2888665 R identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator complement(2887241..2888665) Pseudomonas putida KT2440 1045824 NP_744688.1 CDS PP_2543 NC_002947.3 2888990 2890402 D identified by match to PFAM protein family HMM PF04172; amino acid ABC transporter permease 2888990..2890402 Pseudomonas putida KT2440 1045826 NP_744689.1 CDS PP_2544 NC_002947.3 2890406 2890606 R hypothetical protein complement(2890406..2890606) Pseudomonas putida KT2440 1045827 NP_744690.1 CDS PP_2545 NC_002947.3 2890658 2891476 D similar to SP:P76145, SP:P02930, GB:X54049, PID:43101, PID:43107, PID:882565, GB:U00096, and PID:1789413; identified by sequence similarity; trans-aconitate 2-methyltransferase 2890658..2891476 Pseudomonas putida KT2440 1045829 NP_744691.1 CDS PP_2546 NC_002947.3 2891466 2891837 R hypothetical protein complement(2891466..2891837) Pseudomonas putida KT2440 1045830 NP_744692.1 CDS PP_2547 NC_002947.3 2891895 2892764 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(2891895..2892764) Pseudomonas putida KT2440 1045832 NP_744693.1 CDS PP_2548 NC_002947.3 2893008 2894324 D identified by match to TIGR protein family HMM TIGR00880; major facilitator superfamily transporter 2893008..2894324 Pseudomonas putida KT2440 1045834 NP_744694.1 CDS PP_2549 NC_002947.3 2894339 2895730 D identified by match to PFAM protein family HMM PF01593; hypothetical protein 2894339..2895730 Pseudomonas putida KT2440 1045838 NP_744695.1 CDS PP_2550 NC_002947.3 2895828 2896541 D identified by match to TIGR protein family HMM TIGR01033; hypothetical protein 2895828..2896541 Pseudomonas putida KT2440 1045845 NP_744696.1 CDS PP_2551 NC_002947.3 2896679 2897623 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2896679..2897623 Pseudomonas putida KT2440 1045847 NP_744697.1 CDS PP_2552 NC_002947.3 2897773 2899185 D similar to GP:4512701, SP:P10028, SP:P11904, GB:X04268, PID:43002, and PID:452844; identified by sequence similarity; aromatic-L-amino-acid decarboxylase 2897773..2899185 Pseudomonas putida KT2440 1045854 NP_744698.1 CDS PP_2553 NC_002947.3 2899253 2900626 R similar to GP:11071219; identified by sequence similarity; major facilitator family transporter complement(2899253..2900626) Pseudomonas putida KT2440 1045856 NP_744699.1 CDS PP_2554 NC_002947.3 2900916 2902823 D similar to GB:M34065, SP:P30307, and PID:180176; identified by sequence similarity; 4-hydroxyphenylpyruvate dioxygenase 2900916..2902823 Pseudomonas putida KT2440 1045859 NP_744700.1 CDS PP_2555 NC_002947.3 2902892 2903572 R similar to GB:M94964, PID:531810, and SP:P45602; identified by sequence similarity; type 12 methyltransferase complement(2902892..2903572) Pseudomonas putida KT2440 1045906 NP_744701.1 CDS PP_2556 NC_002947.3 2903572 2904924 R similar to GP:6655031; identified by sequence similarity; chromate transporter complement(2903572..2904924) Pseudomonas putida KT2440 1045910 NP_744702.1 CDS PP_2557 NC_002947.3 2904942 2905805 R similar to GP:9946743; identified by sequence similarity; PAS/PAC sensor-containing diguanylate cyclase complement(2904942..2905805) Pseudomonas putida KT2440 1045914 NP_744703.1 CDS PP_2558 NC_002947.3 2906021 2907379 R similar to GP:6624217, and GP:6624217; identified by sequence similarity; TolC family type I secretion outer membrane protein complement(2906021..2907379) Pseudomonas putida KT2440 1045915 NP_744704.1 CDS hasE NC_002947.3 2907351 2908691 R similar to GB:S71018, and SP:P45877; identified by sequence similarity; HlyD family type I secretion membrane fusion protein complement(2907351..2908691) Pseudomonas putida KT2440 1045922 NP_744705.1 CDS PP_2560 NC_002947.3 2908698 2910434 R similar to GP:4826416; identified by sequence similarity; type I secretion system ATPase complement(2908698..2910434) Pseudomonas putida KT2440 1045926 NP_744706.1 CDS PP_2561 NC_002947.3 2910945 2921804 D identified by match to PFAM protein family HMM PF00353; heme peroxidase 2910945..2921804 Pseudomonas putida KT2440 1045927 NP_744707.1 CDS PP_2562 NC_002947.3 2921966 2922451 D identified by match to PFAM protein family HMM PF00857; hypothetical protein 2921966..2922451 Pseudomonas putida KT2440 1045928 NP_744708.1 CDS PP_2563 NC_002947.3 2922478 2925249 R similar to GP:2052249; identified by sequence similarity; antibiotic biosynthesis protein complement(2922478..2925249) Pseudomonas putida KT2440 1045929 NP_744709.1 CDS PP_2564 NC_002947.3 2925814 2926512 R similar to GP:5354199; identified by sequence similarity; pirin complement(2925814..2926512) Pseudomonas putida KT2440 1045932 NP_744710.1 CDS PP_2565 NC_002947.3 2927058 2929202 D identified by match to PFAM protein family HMM PF00580; UvrD/REP helicase 2927058..2929202 Pseudomonas putida KT2440 1045933 NP_744711.1 CDS PP_2566 NC_002947.3 2929209 2934281 R identified by match to PFAM protein family HMM PF00560; hypothetical protein complement(2929209..2934281) Pseudomonas putida KT2440 1045935 NP_744712.1 CDS PP_2567 NC_002947.3 2934281 2935207 D identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 2934281..2935207 Pseudomonas putida KT2440 1045936 NP_744713.1 CDS PP_2568 NC_002947.3 2935283 2935702 D identified by match to TIGR protein family HMM TIGR00068; glyoxalase/bleomycin resistance protein/dioxygenase 2935283..2935702 Pseudomonas putida KT2440 1045938 NP_744714.1 CDS PP_2569 NC_002947.3 2935964 2937640 D similar to GB:U10554, GB:U09210, PID:507744, and PID:769848; identified by sequence similarity; major facilitator superfamily transporter 2935964..2937640 Pseudomonas putida KT2440 1045939 NP_744715.1 CDS PP_2570 NC_002947.3 2937723 2939051 R similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase complement(2937723..2939051) Pseudomonas putida KT2440 1045941 NP_744716.1 CDS PP_2571 NC_002947.3 2939383 2939490 R hypothetical protein complement(2939383..2939490) Pseudomonas putida KT2440 1045942 NP_744717.1 CDS PP_2572 NC_002947.3 2939491 2940138 R hypothetical protein complement(2939491..2940138) Pseudomonas putida KT2440 1045943 NP_744718.1 CDS PP_2573 NC_002947.3 2940102 2940488 R identified by match to PFAM protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase complement(2940102..2940488) Pseudomonas putida KT2440 1045944 NP_744719.1 CDS PP_2574 NC_002947.3 2940766 2941677 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 2940766..2941677 Pseudomonas putida KT2440 1045945 NP_744720.1 CDS PP_2575 NC_002947.3 2941723 2942196 R hypothetical protein complement(2941723..2942196) Pseudomonas putida KT2440 1045948 NP_744721.1 CDS PP_2577 NC_002947.3 2943569 2945209 D similar to GB:L02321, SP:P46439, and PID:468260; identified by sequence similarity; hypothetical protein 2943569..2945209 Pseudomonas putida KT2440 1045950 NP_744722.1 CDS PP_2578 NC_002947.3 2945221 2945751 D similar to GP:17427611; identified by sequence similarity; hypothetical protein 2945221..2945751 Pseudomonas putida KT2440 1045951 NP_744723.1 CDS PP_2579 NC_002947.3 2945764 2947518 R identified by match to PFAM protein family HMM PF02418; hypothetical protein complement(2945764..2947518) Pseudomonas putida KT2440 1045954 NP_744724.1 CDS PP_2580 NC_002947.3 2947730 2947885 D hypothetical protein 2947730..2947885 Pseudomonas putida KT2440 1045955 NP_744725.1 CDS PP_2581 NC_002947.3 2948115 2948462 R hypothetical protein complement(2948115..2948462) Pseudomonas putida KT2440 1045960 NP_744726.1 CDS PP_2582 NC_002947.3 2948488 2949078 R similar to GP:8163802, and GP:8163802; identified by sequence similarity; heme oxygenase complement(2948488..2949078) Pseudomonas putida KT2440 1045961 NP_744727.1 CDS PP_2583 NC_002947.3 2949172 2949732 D similar to GB:X63763, and PID:47586; identified by sequence similarity; acetyltransferase 2949172..2949732 Pseudomonas putida KT2440 1045964 NP_744728.1 CDS PP_2584 NC_002947.3 2949845 2951242 R catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase complement(2949845..2951242) Pseudomonas putida KT2440 1045965 NP_744729.1 CDS PP_2585 NC_002947.3 2951379 2952959 R identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase complement(2951379..2952959) Pseudomonas putida KT2440 1045967 NP_744730.1 CDS PP_2586 NC_002947.3 2953112 2954524 R identified by match to PFAM protein family HMM PF03647; amino acid ABC transporter permease complement(2953112..2954524) Pseudomonas putida KT2440 1045973 NP_744731.1 CDS PP_2587 NC_002947.3 2954775 2955617 D identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator 2954775..2955617 Pseudomonas putida KT2440 1045974 NP_744732.1 CDS PP_2588 NC_002947.3 2955660 2957042 D similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; aminotransferase 2955660..2957042 Pseudomonas putida KT2440 1045975 NP_744733.1 CDS PP_2589 NC_002947.3 2957238 2958731 D similar to GP:9946056; identified by sequence similarity; aldehyde dehydrogenase 2957238..2958731 Pseudomonas putida KT2440 1045976 NP_744734.1 CDS PP_2590 NC_002947.3 2958873 2961188 R similar to GB:M16038, SP:P07948, PID:307144, GB:M16038, SP:P07948, and PID:307144; identified by sequence similarity; outer membrane ferric siderophore receptor complement(2958873..2961188) Pseudomonas putida KT2440 1045977 NP_744735.1 CDS PP_2591 NC_002947.3 2961228 2962250 R similar to GB:X58536, GB:M12679, GB:M26432, GB:M28171, GB:M84386, GB:U06487, GB:U07230, GB:D31817, GB:Z47377, GB:L54059, GB:X96582, GB:U60422, SP:P01889, SP:P04222, SP:P10321, SP:P30484, SP:P30499, SP:P30500, SP:P30501, SP:P30502, SP:P30503, SP:P30504, SP:P30505, SP:P30506, SP:P30507, SP:P30508, SP:P30509, SP:P30510, SP:Q07000, GB:Y09156, PID:1448997, PID:1561555, PID:1857768, PID:2245531, PID:2394348, PID:2394350, PID:32235, PID:386891, PID:472312, PID:474336, PID:488362, PID:495038, PID:495040, PID:505388, PID:520835, PID:531198, PID:553532, PID:553541, PID:555682, PID:557643, PID:576473, PID:576477, PID:576479, PID:599786, PID:599788, PID:642239, PID:669132, PID:695256, PID:695258, PID:825674, and PID:951150; identified by sequence similarity; ferric siderophore ABC transporter substrate-binding protein complement(2961228..2962250) Pseudomonas putida KT2440 1045978 NP_744736.1 CDS PP_2592 NC_002947.3 2962214 2962990 R similar to GP:10173642, GB:X55150, GB:X55150, GB:L05407, GB:L05408, GB:L05409, GB:L05410, GB:L05411, GB:L05412, GB:L05413, GB:L05414, GB:L05415, GB:L05416, GB:L05417, GB:L05418, GB:L05419, GB:L05420, GB:L05421, GB:L05422, GB:L05424, GB:X66733, GB:M83327, GB:L05423, GB:S66400, GB:S66400, GB:S66400, GB:M59040, GB:M69215, GB:D28477, GB:M83324, GB:M83325, GB:M83326, GB:M83328, GB:X55938, GB:S72928, GB:X56794, GB:X62739, SP:P16070, SP:P22511, PID:950416, PID:950418, PID:950420, and PID:950422; identified by sequence similarity; ferric siderophore ABC transporter ATP-binding protein complement(2962214..2962990) Pseudomonas putida KT2440 1045979 NP_744737.1 CDS PP_2593 NC_002947.3 2962987 2963928 R similar to GB:M20471, SP:P09496, PID:179397, GB:M20471, SP:P09496, and PID:179397; identified by sequence similarity; ferric siderophore ABC transporter permease complement(2962987..2963928) Pseudomonas putida KT2440 1045980 NP_744738.1 CDS PP_2594 NC_002947.3 2963925 2964866 R similar to GB:M15881, SP:P07911, PID:340164, PID:340166, GB:M15881, SP:P07911, PID:340164, and PID:340166; identified by sequence similarity; ferric siderophore ABC transporter permease complement(2963925..2964866) Pseudomonas putida KT2440 1045981 NP_744739.1 CDS PP_2595 NC_002947.3 2964866 2966671 R similar to GP:6714810; identified by sequence similarity; ABC transporter ATP-binding protein/permease complement(2964866..2966671) Pseudomonas putida KT2440 1045982 NP_744740.1 CDS PP_2596 NC_002947.3 2966617 2968410 R identified by match to TIGR protein family HMM TIGR00960; ABC transporter ATP-binding protein/permease complement(2966617..2968410) Pseudomonas putida KT2440 1045983 NP_744741.1 CDS PP_2597 NC_002947.3 2968463 2969131 D identified by match to PFAM protein family HMM PF00440; hypothetical protein 2968463..2969131 Pseudomonas putida KT2440 1045984 NP_744742.1 CDS PP_2598 NC_002947.3 2969337 2969684 D hypothetical protein 2969337..2969684 Pseudomonas putida KT2440 1045985 NP_744743.1 CDS PP_2599 NC_002947.3 2969659 2972049 D identified by match to PFAM protein family HMM PF02743; metal dependent phosphohydrolase 2969659..2972049 Pseudomonas putida KT2440 1045986 NP_744744.1 CDS PP_2600 NC_002947.3 2972158 2973870 R proposed role in polysaccahride synthesis; FAD-binding dehydrogenase complement(2972158..2973870) Pseudomonas putida KT2440 1045988 NP_744745.1 CDS PP_2601 NC_002947.3 2974065 2974841 D identified by match to PFAM protein family HMM PF01614; IclR family transcriptional regulator 2974065..2974841 Pseudomonas putida KT2440 1045989 NP_744746.1 CDS PP_2602 NC_002947.3 2974980 2976032 D identified by match to PFAM protein family HMM PF02894; oxidoreductase domain-containing protein 2974980..2976032 Pseudomonas putida KT2440 1045990 NP_744747.1 CDS PP_2603 NC_002947.3 2976062 2976877 D xylose isomerase 2976062..2976877 Pseudomonas putida KT2440 1045991 NP_744748.1 CDS PP_2604 NC_002947.3 2977026 2978468 R similar to GB:M13267, GB:X02317, GB:K00065, GB:X01662, GB:X01780, GB:X01781, GB:X01782, GB:X01783, GB:X01784, GB:X81859, GB:X95228, SP:P00441, PID:1237406, PID:1237407, PID:1335314, PID:1335315, PID:1335317, PID:1335318, PID:338276, PID:36535, PID:36542, and PID:939773; identified by sequence similarity; major facilitator family transporter complement(2977026..2978468) Pseudomonas putida KT2440 1045992 NP_744749.1 CDS PP_2605 NC_002947.3 2978593 2980281 R similar to GP:9948269; identified by sequence similarity; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(2978593..2980281) Pseudomonas putida KT2440 1045993 NP_744750.1 CDS PP_2606 NC_002947.3 2980323 2980643 R similar to GP:5912096, and GP:7023833; identified by sequence similarity; NIPSNAP family containing protein complement(2980323..2980643) Pseudomonas putida KT2440 1045994 NP_744751.1 CDS PP_2607 NC_002947.3 2980628 2982361 R similar to GP:9948269; identified by sequence similarity; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(2980628..2982361) Pseudomonas putida KT2440 1045995 NP_744752.1 CDS PP_2608 NC_002947.3 2982366 2983175 R similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; shikimate dehydrogenase complement(2982366..2983175) Pseudomonas putida KT2440 1045996 NP_744753.1 CDS PP_2609 NC_002947.3 2983332 2984102 D similar to GP:6646870; identified by sequence similarity; IclR family transcriptional regulator 2983332..2984102 Pseudomonas putida KT2440 1045997 NP_744754.1 CDS PP_2610 NC_002947.3 2984253 2984510 R similar to GP:15158890; identified by sequence similarity; hypothetical protein complement(2984253..2984510) Pseudomonas putida KT2440 1045998 NP_744755.1 CDS PP_2611 NC_002947.3 2984507 2985466 R hypothetical protein complement(2984507..2985466) Pseudomonas putida KT2440 1045999 NP_744756.1 CDS PP_2612 NC_002947.3 2985405 2988395 R hypothetical protein complement(2985405..2988395) Pseudomonas putida KT2440 1046001 NP_744757.1 CDS PP_2613 NC_002947.3 2988388 2989338 R hypothetical protein complement(2988388..2989338) Pseudomonas putida KT2440 1046002 NP_744758.1 CDS vgrG-1 NC_002947.3 2989308 2991476 R similar to GP:2920640; identified by sequence similarity; vgrG protein complement(2989308..2991476) Pseudomonas putida KT2440 1046003 NP_744759.1 CDS hcp-1 NC_002947.3 2991551 2992066 R similar to GP:2920641; identified by sequence similarity; hcp protein complement(2991551..2992066) Pseudomonas putida KT2440 1046004 NP_744760.1 CDS PP_2616 NC_002947.3 2992200 2993069 R hypothetical protein complement(2992200..2993069) Pseudomonas putida KT2440 1046005 NP_744761.1 CDS PP_2617 NC_002947.3 2993071 2994408 R hypothetical protein complement(2993071..2994408) Pseudomonas putida KT2440 1046006 NP_744762.1 CDS PP_2618 NC_002947.3 2994464 2995261 R hypothetical protein complement(2994464..2995261) Pseudomonas putida KT2440 1046007 NP_744763.1 CDS PP_2619 NC_002947.3 2995258 2995827 R identified by match to PFAM protein family HMM PF00498; FHA domain-containing protein complement(2995258..2995827) Pseudomonas putida KT2440 1046008 NP_744764.1 CDS PP_2620 NC_002947.3 2995824 2996840 R hypothetical protein complement(2995824..2996840) Pseudomonas putida KT2440 1046009 NP_744765.1 CDS PP_2621 NC_002947.3 2996804 2998570 R hypothetical protein complement(2996804..2998570) Pseudomonas putida KT2440 1046010 NP_744766.1 CDS PP_2622 NC_002947.3 2998574 2998984 R hypothetical protein complement(2998574..2998984) Pseudomonas putida KT2440 1046011 NP_744767.1 CDS PP_2623 NC_002947.3 2998981 3000471 R identified by match to PFAM protein family HMM PF00595; hypothetical protein complement(2998981..3000471) Pseudomonas putida KT2440 1046012 NP_744768.1 CDS PP_2624 NC_002947.3 3000489 3000992 R similar to GP:2920642, and GP:2920642; identified by sequence similarity; hypothetical protein complement(3000489..3000992) Pseudomonas putida KT2440 1046013 NP_744769.1 CDS PP_2625 NC_002947.3 3001274 3001969 D hypothetical protein 3001274..3001969 Pseudomonas putida KT2440 1046014 NP_744770.1 CDS PP_2626 NC_002947.3 3001957 3003420 D hypothetical protein 3001957..3003420 Pseudomonas putida KT2440 1046015 NP_744771.1 CDS PP_2627 NC_002947.3 3003417 3007037 D hypothetical protein 3003417..3007037 Pseudomonas putida KT2440 1046016 NP_744772.1 CDS PP_2628 NC_002947.3 3007115 3009091 R similar to GB:J00128, GB:M58569, GB:M64982, GB:J00127, GB:K02272, GB:M26878, SP:P02671, GB:S82092, PID:182407, PID:182424, PID:182426, PID:182428, PID:458554, and PID:458555; identified by sequence similarity; ABC transporter ATP-binding protein complement(3007115..3009091) Pseudomonas putida KT2440 1046017 NP_744773.1 CDS PP_2629 NC_002947.3 3009133 3009903 D similar to GB:L10320, GB:D26054, GB:D26055, GB:D26056, GB:U47919, GB:U47918, SP:P09467, PID:1200520, PID:1200522, PID:178349, PID:182311, PID:439226, PID:439228, and PID:439230; identified by sequence similarity; hypothetical protein 3009133..3009903 Pseudomonas putida KT2440 1046018 NP_744774.1 CDS PP_2630 NC_002947.3 3009908 3010762 D similar to GB:L10320, GB:D26054, GB:D26055, GB:D26056, GB:U47919, GB:U47918, SP:P09467, PID:1200520, PID:1200522, PID:178349, PID:182311, PID:439226, PID:439228, and PID:439230; identified by sequence similarity; hypothetical protein 3009908..3010762 Pseudomonas putida KT2440 1046019 NP_744775.1 CDS PP_2631 NC_002947.3 3010759 3010944 D hypothetical protein 3010759..3010944 Pseudomonas putida KT2440 1046021 NP_744776.1 CDS PP_2632 NC_002947.3 3010937 3012550 D hypothetical protein 3010937..3012550 Pseudomonas putida KT2440 1046022 NP_744777.1 CDS PP_2633 NC_002947.3 3012547 3012765 D hypothetical protein 3012547..3012765 Pseudomonas putida KT2440 1046023 NP_744778.1 CDS PP_2634 NC_002947.3 3012762 3013469 D cellulose synthase 3012762..3013469 Pseudomonas putida KT2440 1046024 NP_744779.1 CDS bcsA NC_002947.3 3013466 3016075 D polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3013466..3016075 Pseudomonas putida KT2440 1046025 NP_744780.1 CDS PP_2636 NC_002947.3 3016075 3018357 D binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3016075..3018357 Pseudomonas putida KT2440 1046026 NP_744781.1 CDS PP_2637 NC_002947.3 3018360 3019472 D catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 3018360..3019472 Pseudomonas putida KT2440 1046027 NP_744782.1 CDS PP_2638 NC_002947.3 3019460 3022978 D cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3019460..3022978 Pseudomonas putida KT2440 1046028 NP_744783.1 CDS PP_2639 NC_002947.3 3023316 3024182 D identified by match to PFAM protein family HMM PF00701; dihydrodipicolinate synthase 3023316..3024182 Pseudomonas putida KT2440 1046029 NP_744784.1 CDS PP_2640 NC_002947.3 3024336 3024794 R similar to GB:M23326, GB:X15261, GB:X13954, PID:1049195, PID:2358067, PID:312412, PID:37046, PID:37048, PID:37298, PID:37324, and PID:540457; identified by sequence similarity; acetyltransferase complement(3024336..3024794) Pseudomonas putida KT2440 1046031 NP_744785.1 CDS PP_2641 NC_002947.3 3024833 3026632 R similar to SP:P37911, GB:X07469, SP:P08149, GB:M32091, GB:X07468, GB:X07470, GB:X59632, PID:150279, PID:44911, PID:44913, PID:44915, and PID:509155; identified by sequence similarity; (Fe-S)-binding protein complement(3024833..3026632) Pseudomonas putida KT2440 1046032 NP_744786.1 CDS PP_2642 NC_002947.3 3026633 3028123 D identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator 3026633..3028123 Pseudomonas putida KT2440 1046034 NP_744787.1 CDS PP_2643 NC_002947.3 3028345 3029997 D similar to GP:9947573; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer 3028345..3029997 Pseudomonas putida KT2440 1046035 NP_744788.1 CDS PP_2644 NC_002947.3 3030247 3030393 D hypothetical protein 3030247..3030393 Pseudomonas putida KT2440 1046036 NP_744789.1 CDS mgtB NC_002947.3 3030691 3033453 D similar to GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, and PID:32672; identified by sequence similarity; magnesium-translocating P-type ATPase 3030691..3033453 Pseudomonas putida KT2440 1046037 NP_744790.1 CDS PP_2646 NC_002947.3 3033457 3033852 D hypothetical protein 3033457..3033852 Pseudomonas putida KT2440 1046039 NP_744791.1 CDS PP_2647 NC_002947.3 3033959 3035185 R similar to GP:5738822; identified by sequence similarity; major facilitator family transporter complement(3033959..3035185) Pseudomonas putida KT2440 1046040 NP_744792.1 CDS PP_2648 NC_002947.3 3035478 3036407 R identified by match to PFAM protein family HMM PF00582; universal stress protein complement(3035478..3036407) Pseudomonas putida KT2440 1046042 NP_744793.1 CDS PP_2649 NC_002947.3 3036642 3037583 R similar to GP:9948229; identified by sequence similarity; LysR family transcriptional regulator complement(3036642..3037583) Pseudomonas putida KT2440 1046043 NP_744794.1 CDS gbd NC_002947.3 3037726 3038868 D similar to GP:5916169, GB:U08997, GB:X66310, GB:X53144, GB:X53147, SP:P00367, SP:P49448, PID:31815, PID:478988, and PID:579924; identified by sequence similarity; iron-containing alcohol dehydrogenase 3037726..3038868 Pseudomonas putida KT2440 1046044 NP_744795.1 CDS PP_2651 NC_002947.3 3038913 3040256 D identified by match to PFAM protein family HMM PF03977; major facilitator family transporter 3038913..3040256 Pseudomonas putida KT2440 1046045 NP_744796.1 CDS PP_2652 NC_002947.3 3040395 3041180 D similar to GP:9478254; identified by sequence similarity; hydratase/decarboxylase 3040395..3041180 Pseudomonas putida KT2440 1046046 NP_744797.1 CDS PP_2653 NC_002947.3 3041170 3041988 R similar to GP:3560014; identified by sequence similarity; Cro/CI family transcriptional regulator complement(3041170..3041988) Pseudomonas putida KT2440 1046047 NP_744798.1 CDS PP_2654 NC_002947.3 3042406 3042831 D identified by match to PFAM protein family HMM PF01124; eicosanoid and glutathione metabolism membrane protein 3042406..3042831 Pseudomonas putida KT2440 1046048 NP_744799.1 CDS PP_2655 NC_002947.3 3042903 3043136 D hypothetical protein 3042903..3043136 Pseudomonas putida KT2440 1046049 NP_744800.1 CDS PP_2656 NC_002947.3 3043339 3044385 D similar to GB:D90359, GB:M73442, GB:M73444, GB:X07024, SP:P21675, PID:29733, GB:L13385, GB:L13386, GB:L13387, SP:P43034, PID:1850956, PID:349824, PID:349826, PID:349828, GB:L13385, GB:L13386, GB:L13387, SP:P43034, PID:1850956, PID:349824, PID:349826, and PID:349828; identified by sequence similarity; phosphate ABC transporter substrate-binding protein 3043339..3044385 Pseudomonas putida KT2440 1046051 NP_744801.1 CDS PP_2657 NC_002947.3 3044456 3045424 D identified by match to PFAM protein family HMM PF00528; phosphate ABC transporter permease 3044456..3045424 Pseudomonas putida KT2440 1046052 NP_744802.1 CDS PP_2658 NC_002947.3 3045421 3046314 D similar to GB:M20132, GB:L29496, GB:M20260, SP:P10275, PID:178628, PID:178872, PID:178882, PID:178892, PID:178894, PID:178906, PID:460281, GB:L13385, GB:L13386, GB:L13387, SP:P43034, PID:1850956, PID:349824, PID:349826, and PID:349828; identified by sequence similarity; phosphate ABC transporter permease 3045421..3046314 Pseudomonas putida KT2440 1046053 NP_744803.1 CDS PP_2659 NC_002947.3 3046311 3047150 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 3046311..3047150 Pseudomonas putida KT2440 1046054 NP_744804.1 CDS PP_2660 NC_002947.3 3047167 3047943 D hypothetical protein 3047167..3047943 Pseudomonas putida KT2440 1046055 NP_744805.1 CDS PP_2661 NC_002947.3 3047943 3048542 D hypothetical protein 3047943..3048542 Pseudomonas putida KT2440 1046056 NP_744806.1 CDS PP_2662 NC_002947.3 3048838 3050025 D hypothetical protein 3048838..3050025 Pseudomonas putida KT2440 1046057 NP_744807.1 CDS PP_2663 NC_002947.3 3050166 3051329 D similar to GP:9947975; identified by sequence similarity; hypothetical protein 3050166..3051329 Pseudomonas putida KT2440 1046065 NP_744808.1 CDS PP_2664 NC_002947.3 3051229 3053196 D identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor hybrid histidine kinase 3051229..3053196 Pseudomonas putida KT2440 1046081 NP_744809.1 CDS agmR NC_002947.3 3053242 3053907 R similar to GB:M89651, GB:D16366, GB:L49169, SP:P53539, and PID:1082038; identified by sequence similarity; LuxR family transcriptional regulator complement(3053242..3053907) Pseudomonas putida KT2440 1046089 NP_744810.1 CDS PP_2666 NC_002947.3 3053962 3054522 R hypothetical protein complement(3053962..3054522) Pseudomonas putida KT2440 1046090 NP_744811.1 CDS PP_2667 NC_002947.3 3054830 3055621 R similar to SP:P16542, GB:X16300, PID:47992, and PID:47978; identified by sequence similarity; ABC transporter complement(3054830..3055621) Pseudomonas putida KT2440 1046096 NP_744812.1 CDS PP_2668 NC_002947.3 3055618 3056358 R similar to GP:10173669; identified by sequence similarity; ABC transporter ATP-binding protein complement(3055618..3056358) Pseudomonas putida KT2440 1046097 NP_744813.1 CDS PP_2669 NC_002947.3 3056355 3057344 R similar to GB:X64062, SP:Q00637, PID:1335657, and PID:409457; identified by sequence similarity; hypothetical protein complement(3056355..3057344) Pseudomonas putida KT2440 1046101 NP_744814.1 CDS PP_2670 NC_002947.3 3057324 3058658 D hypothetical protein 3057324..3058658 Pseudomonas putida KT2440 1046102 NP_744815.1 CDS PP_2671 NC_002947.3 3058719 3059993 D similar to GP:8671337; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 3058719..3059993 Pseudomonas putida KT2440 1046105 NP_744816.1 CDS PP_2672 NC_002947.3 3059993 3060631 D similar to GP:8671336; identified by sequence similarity; LuxR family transcriptional regulator 3059993..3060631 Pseudomonas putida KT2440 1046110 NP_744817.1 CDS PP_2673 NC_002947.3 3060837 3061496 R identified by match to PFAM protein family HMM PF00805; pentapeptide repeat-containing protein complement(3060837..3061496) Pseudomonas putida KT2440 1046113 NP_744818.1 CDS qedH NC_002947.3 3061563 3063458 R identified by match to PFAM protein family HMM PF01011; quinoprotein ethanol dehydrogenase complement(3061563..3063458) Pseudomonas putida KT2440 1046117 NP_744819.1 CDS PP_2675 NC_002947.3 3063713 3064174 D similar to GP:9947984; identified by sequence similarity; cytochrome c-type protein 3063713..3064174 Pseudomonas putida KT2440 1046118 NP_744820.1 CDS PP_2676 NC_002947.3 3064129 3065055 D identified by match to TIGR protein family HMM TIGR01096; hypothetical protein 3064129..3065055 Pseudomonas putida KT2440 1046120 NP_744821.1 CDS PP_2677 NC_002947.3 3065058 3065825 D hypothetical protein 3065058..3065825 Pseudomonas putida KT2440 1046123 NP_744822.1 CDS PP_2678 NC_002947.3 3065864 3066787 D identified by match to PFAM protein family HMM PF00753; beta-lactamase domain-containing protein 3065864..3066787 Pseudomonas putida KT2440 1046127 NP_744823.1 CDS PP_2679 NC_002947.3 3066959 3068746 D identified by match to PFAM protein family HMM PF01011; quinoprotein ethanol dehydrogenase 3066959..3068746 Pseudomonas putida KT2440 1046129 NP_744824.1 CDS PP_2680 NC_002947.3 3068909 3070429 D identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 3068909..3070429 Pseudomonas putida KT2440 1046130 NP_744825.1 CDS PP_2681 NC_002947.3 3070783 3071055 D with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 3070783..3071055 Pseudomonas putida KT2440 1046135 NP_744826.1 CDS PP_2682 NC_002947.3 3071145 3072308 D identified by match to PFAM protein family HMM PF00465; iron-containing alcohol dehydrogenase 3071145..3072308 Pseudomonas putida KT2440 1046138 NP_744827.1 CDS PP_2683 NC_002947.3 3072259 3073962 D identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor hybrid histidine kinase 3072259..3073962 Pseudomonas putida KT2440 1046144 NP_744828.1 CDS PP_2684 NC_002947.3 3074392 3075102 D hypothetical protein 3074392..3075102 Pseudomonas putida KT2440 1046145 NP_744829.1 CDS PP_2685 NC_002947.3 3075327 3076049 R identified by match to PFAM protein family HMM PF00227; hypothetical protein complement(3075327..3076049) Pseudomonas putida KT2440 1046150 NP_744830.1 CDS PP_2686 NC_002947.3 3076123 3076902 R identified by match to PFAM protein family HMM PF01841; transglutaminase complement(3076123..3076902) Pseudomonas putida KT2440 1046154 NP_744831.1 CDS PP_2687 NC_002947.3 3076899 3077849 R identified by match to PFAM protein family HMM PF04168; hypothetical protein complement(3076899..3077849) Pseudomonas putida KT2440 1046155 NP_744832.1 CDS PP_2688 NC_002947.3 3077853 3079262 R identified by match to PFAM protein family HMM PF04174; hypothetical protein complement(3077853..3079262) Pseudomonas putida KT2440 1046156 NP_744833.1 CDS PP_2689 NC_002947.3 3079696 3080067 R similar to GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, and PID:1789205; identified by sequence similarity; endoribonuclease complement(3079696..3080067) Pseudomonas putida KT2440 1046157 NP_744834.1 CDS PP_2690 NC_002947.3 3080095 3080796 R hypothetical protein complement(3080095..3080796) Pseudomonas putida KT2440 1046158 NP_744835.1 CDS PP_2691 NC_002947.3 3080793 3082511 R hypothetical protein complement(3080793..3082511) Pseudomonas putida KT2440 1046159 NP_744836.1 CDS PP_2692 NC_002947.3 3082514 3084064 R identified by match to PFAM protein family HMM PF02028; BCCT family transporter complement(3082514..3084064) Pseudomonas putida KT2440 1046160 NP_744837.1 CDS PP_2693 NC_002947.3 3084120 3085106 R similar to GP:15140243; identified by sequence similarity; dipeptidase complement(3084120..3085106) Pseudomonas putida KT2440 1046161 NP_744838.1 CDS PP_2694 NC_002947.3 3085120 3086562 R identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase complement(3085120..3086562) Pseudomonas putida KT2440 1046162 NP_744839.1 CDS PP_2695 NC_002947.3 3086649 3087545 D similar to GB:X60036, GB:X77337, and SP:Q00325; identified by sequence similarity; LysR family transcriptional regulator 3086649..3087545 Pseudomonas putida KT2440 1046164 NP_744840.1 CDS metR-2 NC_002947.3 3087612 3088541 R similar to GB:X59618, SP:P31350, and PID:36155; identified by sequence similarity; transcriptional activator MetR complement(3087612..3088541) Pseudomonas putida KT2440 1046165 NP_744841.1 CDS PP_2697 NC_002947.3 3088640 3089221 R identified by match to PFAM protein family HMM PF01613; flavin reductase domain-containing protein complement(3088640..3089221) Pseudomonas putida KT2440 1046166 NP_744842.1 CDS metE NC_002947.3 3089175 3090209 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(3089175..3090209) Pseudomonas putida KT2440 1046177 NP_744843.1 CDS PP_2699 NC_002947.3 3090236 3091288 R hypothetical protein complement(3090236..3091288) Pseudomonas putida KT2440 1046211 NP_744844.1 CDS PP_2700 NC_002947.3 3091450 3091950 D similar to GP:5441879; identified by sequence similarity; redoxin domain-containing protein 3091450..3091950 Pseudomonas putida KT2440 1046217 NP_744845.1 CDS PP_2701 NC_002947.3 3092037 3092975 D similar to SP:P12985, and PID:48337; identified by sequence similarity; LysR family transcriptional regulator 3092037..3092975 Pseudomonas putida KT2440 1046218 NP_744846.1 CDS PP_2702 NC_002947.3 3092952 3094082 R similar to GB:D13969, SP:P35227, PID:285933, GB:D13969, SP:P35227, and PID:285933; identified by sequence similarity; hypothetical protein complement(3092952..3094082) Pseudomonas putida KT2440 1046219 NP_744847.1 CDS PP_2703 NC_002947.3 3094150 3095757 D identified by match to PFAM protein family HMM PF00083; major facilitator superfamily transporter 3094150..3095757 Pseudomonas putida KT2440 1046223 NP_744848.1 CDS PP_2704 NC_002947.3 3095759 3096943 D similar to GB:M25667, GB:S66533, GB:S66534, GB:S66541, SP:P17677, and PID:182970; identified by sequence similarity; M20/M25/M40 family peptidase 3095759..3096943 Pseudomonas putida KT2440 1046224 NP_744849.1 CDS PP_2705 NC_002947.3 3096994 3097329 D hypothetical protein 3096994..3097329 Pseudomonas putida KT2440 1046252 NP_744850.1 CDS PP_2706 NC_002947.3 3097395 3097637 D hypothetical protein 3097395..3097637 Pseudomonas putida KT2440 1046262 NP_744851.1 CDS PP_2707 NC_002947.3 3097634 3098431 D identified by match to TIGR protein family HMM TIGR00633; exodeoxyribonuclease III 3097634..3098431 Pseudomonas putida KT2440 1041586 NP_744852.1 CDS PP_2708 NC_002947.3 3098549 3099229 D hypothetical protein 3098549..3099229 Pseudomonas putida KT2440 1041743 NP_744853.1 CDS PP_2709 NC_002947.3 3099219 3100688 D identified by match to TIGR protein family HMM TIGR01734; long-chain-fatty-acid--CoA ligase 3099219..3100688 Pseudomonas putida KT2440 1041738 NP_744854.1 CDS PP_2710 NC_002947.3 3100697 3101377 D similar to GP:9658555; identified by sequence similarity; hypothetical protein 3100697..3101377 Pseudomonas putida KT2440 1041716 NP_744855.1 CDS PP_2711 NC_002947.3 3101364 3102170 D identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase 3101364..3102170 Pseudomonas putida KT2440 1041753 NP_744856.1 CDS PP_2712 NC_002947.3 3102167 3102808 D hypothetical protein 3102167..3102808 Pseudomonas putida KT2440 1041745 NP_744857.1 CDS PP_2713 NC_002947.3 3102811 3103473 D identified by match to TIGR protein family HMM TIGR01387; DNA-binding response regulator 3102811..3103473 Pseudomonas putida KT2440 1041732 NP_744858.1 CDS PP_2714 NC_002947.3 3103470 3104834 D identified by match to PFAM protein family HMM PF00512; sensor histidine kinase 3103470..3104834 Pseudomonas putida KT2440 1047022 NP_744859.1 CDS arsH NC_002947.3 3104847 3105548 R identified by match to PFAM protein family HMM PF03358; arsH protein complement(3104847..3105548) Pseudomonas putida KT2440 1041771 NP_744860.1 CDS arsC-3 NC_002947.3 3105562 3106032 R similar to GP:3095052, and GP:3095052; identified by sequence similarity; arsenate reductase complement(3105562..3106032) Pseudomonas putida KT2440 1041757 NP_744861.1 CDS arsB-2 NC_002947.3 3106061 3107344 R similar to GP:3095051; identified by sequence similarity; arsenite efflux transporter complement(3106061..3107344) Pseudomonas putida KT2440 1041749 NP_744862.1 CDS arsR-2 NC_002947.3 3107366 3107713 R similar to GP:11691633; identified by sequence similarity; arsenic resistance transcriptional regulator complement(3107366..3107713) Pseudomonas putida KT2440 1041740 NP_744863.1 CDS PP_2719 NC_002947.3 3107899 3108003 R hypothetical protein complement(3107899..3108003) Pseudomonas putida KT2440 1047008 NP_744864.1 CDS PP_2720 NC_002947.3 3108077 3108298 D hypothetical protein 3108077..3108298 Pseudomonas putida KT2440 1041788 NP_744865.1 CDS PP_2721 NC_002947.3 3108277 3108627 R hypothetical protein complement(3108277..3108627) Pseudomonas putida KT2440 1041752 NP_744866.1 CDS PP_2722 NC_002947.3 3108687 3109151 R identified by match to PFAM protein family HMM PF03794; hemerythrin HHE cation binding domain-containing protein complement(3108687..3109151) Pseudomonas putida KT2440 1041764 NP_744867.1 CDS PP_2723 NC_002947.3 3109320 3110177 R similar to SP:P32687, PID:409796, GB:U00096, and PID:1790459; identified by sequence similarity; short chain dehydrogenase/reductase oxidoreductase complement(3109320..3110177) Pseudomonas putida KT2440 1041742 NP_744868.1 CDS PP_2724 NC_002947.3 3110372 3110896 D hypothetical protein 3110372..3110896 Pseudomonas putida KT2440 1041804 NP_744869.1 CDS pfpI NC_002947.3 3110953 3111495 R identified by match to TIGR protein family HMM TIGR01382; protease PfpI complement(3110953..3111495) Pseudomonas putida KT2440 1047013 NP_744870.1 CDS PP_2726 NC_002947.3 3111585 3112277 R identified by match to PFAM protein family HMM PF04239; hypothetical protein complement(3111585..3112277) Pseudomonas putida KT2440 1041780 NP_744871.1 CDS PP_2727 NC_002947.3 3112373 3113143 R similar to SP:P21158; identified by sequence similarity; C-factor complement(3112373..3113143) Pseudomonas putida KT2440 1043350 NP_744872.1 CDS PP_2728 NC_002947.3 3113222 3113713 R similar to GB:D00496, SP:P17166, PID:216760, GB:D00496, SP:P17166, and PID:216760; identified by sequence similarity; hypothetical protein complement(3113222..3113713) Pseudomonas putida KT2440 1041765 NP_744873.1 CDS PP_2729 NC_002947.3 3113697 3114410 D identified by match to PFAM protein family HMM PF00042; hypothetical protein 3113697..3114410 Pseudomonas putida KT2440 1046258 NP_744874.1 CDS PP_2730 NC_002947.3 3114413 3114949 D lipoprotein 3114413..3114949 Pseudomonas putida KT2440 1045437 NP_744875.1 CDS PP_2731 NC_002947.3 3114946 3115251 D hypothetical protein 3114946..3115251 Pseudomonas putida KT2440 1041907 NP_744876.1 CDS PP_2732 NC_002947.3 3115260 3116786 D identified by match to PFAM protein family HMM PF04244; hypothetical protein 3115260..3116786 Pseudomonas putida KT2440 1042618 NP_744877.1 CDS PP_2733 NC_002947.3 3116903 3117391 R hypothetical protein complement(3116903..3117391) Pseudomonas putida KT2440 1041887 NP_744878.1 CDS cfa NC_002947.3 3117391 3118578 R identified by match to PFAM protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(3117391..3118578) Pseudomonas putida KT2440 1045419 NP_744879.1 CDS PP_2735 NC_002947.3 3118628 3119437 R hypothetical protein complement(3118628..3119437) Pseudomonas putida KT2440 1042235 NP_744880.1 CDS PP_2736 NC_002947.3 3119434 3120681 R identified by match to PFAM protein family HMM PF01593; amine oxidase complement(3119434..3120681) Pseudomonas putida KT2440 1041871 NP_744881.1 CDS PP_2737 NC_002947.3 3120688 3121440 R identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase complement(3120688..3121440) Pseudomonas putida KT2440 1042323 NP_744882.1 CDS PP_2738 NC_002947.3 3121437 3121859 R hypothetical protein complement(3121437..3121859) Pseudomonas putida KT2440 1043666 NP_744883.1 CDS PP_2739 NC_002947.3 3121963 3122418 R similar to GB:L40411, SP:Q15652, and PID:703116; identified by sequence similarity; sensory box protein complement(3121963..3122418) Pseudomonas putida KT2440 1041947 NP_744884.1 CDS PP_2740 NC_002947.3 3122563 3123450 D identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 3122563..3123450 Pseudomonas putida KT2440 1043217 NP_744885.1 CDS PP_2741 NC_002947.3 3123612 3125249 R similar to GB:X71874, SP:P40306, PID:406227, GB:X71874, SP:P40306, and PID:406227; identified by sequence similarity; mechanosensitive ion channel protein MscS complement(3123612..3125249) Pseudomonas putida KT2440 1041942 NP_744886.1 CDS PP_2742 NC_002947.3 3125317 3125676 R hypothetical protein complement(3125317..3125676) Pseudomonas putida KT2440 1045309 NP_744887.1 CDS PP_2743 NC_002947.3 3125673 3126266 R similar to GP:11061692; identified by sequence similarity; acetyltransferase complement(3125673..3126266) Pseudomonas putida KT2440 1043357 NP_744888.1 CDS PP_2744 NC_002947.3 3126462 3127421 R similar to SP:P08330; identified by sequence similarity; ribose-phosphate pyrophosphokinase complement(3126462..3127421) Pseudomonas putida KT2440 1041962 NP_744889.1 CDS PP_2745 NC_002947.3 3127517 3128413 R similar to SP:P03807; identified by sequence similarity; universal stress protein complement(3127517..3128413) Pseudomonas putida KT2440 1045681 NP_744890.1 CDS PP_2746 NC_002947.3 3128751 3130160 D similar to GP:9948360; identified by sequence similarity; hypothetical protein 3128751..3130160 Pseudomonas putida KT2440 1041969 NP_744891.1 CDS PP_2747 NC_002947.3 3130181 3131152 D similar to GB:M68571, SP:P26979, and PID:154368; identified by sequence similarity; hypothetical protein 3130181..3131152 Pseudomonas putida KT2440 1042623 NP_744892.1 CDS PP_2748 NC_002947.3 3131119 3131919 D similar to GP:6752325; identified by sequence similarity; branched-chain amino acid ABC transporter ATP-binding protein 3131119..3131919 Pseudomonas putida KT2440 1043331 NP_744893.1 CDS PP_2749 NC_002947.3 3131916 3132797 D similar to GB:M58480, SP:P24695, and PID:154644; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3131916..3132797 Pseudomonas putida KT2440 1041975 NP_744894.1 CDS PP_2750 NC_002947.3 3132802 3133866 D similar to GP:9756928; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3132802..3133866 Pseudomonas putida KT2440 1045909 NP_744895.1 CDS PP_2751 NC_002947.3 3133945 3135285 D hypothetical protein 3133945..3135285 Pseudomonas putida KT2440 1045956 NP_744896.1 CDS PP_2752 NC_002947.3 3135345 3136679 D hypothetical protein 3135345..3136679 Pseudomonas putida KT2440 1041976 NP_744897.1 CDS PP_2753 NC_002947.3 3136796 3137569 D similar to SP:P22731; identified by sequence similarity; branched-chain amino acid ABC transporter ATP-binding protein 3136796..3137569 Pseudomonas putida KT2440 1043347 NP_744898.1 CDS PP_2754 NC_002947.3 3137769 3139208 D similar to GP:9945994; identified by sequence similarity; porin 3137769..3139208 Pseudomonas putida KT2440 1041993 NP_744899.1 CDS PP_2755 NC_002947.3 3139444 3140688 D identified by match to PFAM protein family HMM PF00441; hypothetical protein 3139444..3140688 Pseudomonas putida KT2440 1045971 NP_744900.1 CDS PP_2756 NC_002947.3 3140698 3141084 D hypothetical protein 3140698..3141084 Pseudomonas putida KT2440 1042012 NP_744901.1 CDS PP_2757 NC_002947.3 3141081 3142052 D similar to GP:6714794; identified by sequence similarity; sugar-binding protein 3141081..3142052 Pseudomonas putida KT2440 1042003 NP_744902.1 CDS PP_2758 NC_002947.3 3142049 3143077 D similar to GB:L25415, PID:496154, and SP:P53662; identified by sequence similarity; ribose ABC transporter substrate-binding protein 3142049..3143077 Pseudomonas putida KT2440 1045162 NP_744903.1 CDS PP_2759 NC_002947.3 3143074 3144612 D similar to GP:6714793; identified by sequence similarity; ribose ABC transporter ATP-binding protein 3143074..3144612 Pseudomonas putida KT2440 1042032 NP_744904.1 CDS PP_2760 NC_002947.3 3144527 3145573 D similar to GP:6714794; identified by sequence similarity; ribose transport permease 3144527..3145573 Pseudomonas putida KT2440 1045713 NP_744905.1 CDS PP_2761 NC_002947.3 3145575 3146561 D similar to GP:6714794; identified by sequence similarity; ribose ABC transporter permease 3145575..3146561 Pseudomonas putida KT2440 1042038 NP_744906.1 CDS PP_2762 NC_002947.3 3146627 3147865 R identified by match to PFAM protein family HMM PF02770; hypothetical protein complement(3146627..3147865) Pseudomonas putida KT2440 1045905 NP_744907.1 CDS PP_2763 NC_002947.3 3147847 3148002 D hypothetical protein 3147847..3148002 Pseudomonas putida KT2440 1042066 NP_744908.1 CDS msuE NC_002947.3 3148204 3148764 D identified by match to PFAM protein family HMM PF03358; NADH-dependent FMN reductase MsuE 3148204..3148764 Pseudomonas putida KT2440 1042054 NP_744909.1 CDS PP_2765 NC_002947.3 3148791 3149882 D similar to SP:P40402; identified by sequence similarity; luciferase 3148791..3149882 Pseudomonas putida KT2440 1045898 NP_744910.1 CDS PP_2766 NC_002947.3 3149894 3151024 D similar to GB:M68571, SP:P26979, PID:154368, GB:M68571, SP:P26979, and PID:154368; identified by sequence similarity; long-chain-fatty-acid--CoA ligase-like protein 3149894..3151024 Pseudomonas putida KT2440 1042153 NP_744911.1 CDS PP_2767 NC_002947.3 3151034 3151867 D similar to GP:6752325; identified by sequence similarity; branched-chain amino acid ABC transporter ATP-binding protein 3151034..3151867 Pseudomonas putida KT2440 1045697 NP_744912.1 CDS PP_2768 NC_002947.3 3151843 3152724 D similar to GB:M58480, SP:P24695, and PID:154644; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3151843..3152724 Pseudomonas putida KT2440 1042163 NP_744913.1 CDS PP_2769 NC_002947.3 3152737 3153726 D similar to GP:9756928; identified by sequence similarity; branched-chain amino acid ABC transporter permease 3152737..3153726 Pseudomonas putida KT2440 1042160 NP_744914.1 CDS PP_2770 NC_002947.3 3153794 3155119 D hypothetical protein 3153794..3155119 Pseudomonas putida KT2440 1042217 NP_744915.1 CDS PP_2771 NC_002947.3 3155156 3156259 R identified by match to TIGR protein family HMM TIGR01199; Fis family transcriptional regulator complement(3155156..3156259) Pseudomonas putida KT2440 1042350 NP_744916.1 CDS PP_2772 NC_002947.3 3156268 3157455 R similar to GP:2582423; identified by sequence similarity; monooxygenase complement(3156268..3157455) Pseudomonas putida KT2440 1042611 NP_744917.1 CDS PP_2773 NC_002947.3 3157511 3157669 R hypothetical protein complement(3157511..3157669) Pseudomonas putida KT2440 1042281 NP_744918.1 CDS PP_2774 NC_002947.3 3157979 3160075 D similar to GP:9367460; identified by sequence similarity; glycine betaine/L-proline ABC transporter ATPase/permease fusion protein 3157979..3160075 Pseudomonas putida KT2440 1042237 NP_744919.1 CDS PP_2775 NC_002947.3 3160006 3161130 D similar to GP:7188801; identified by sequence similarity; glycine/betaine ABC transporter substrate-binding protein 3160006..3161130 Pseudomonas putida KT2440 1042630 NP_744920.1 CDS PP_2776 NC_002947.3 3161127 3162050 D similar to GB:U02081, and PID:548082; identified by sequence similarity; homocysteine S-methyltransferase 3161127..3162050 Pseudomonas putida KT2440 1042315 NP_744921.1 CDS PP_2777 NC_002947.3 3162630 3163199 D identified by match to PFAM protein family HMM PF00550; acyl carrier protein 3162630..3163199 Pseudomonas putida KT2440 1042296 NP_744922.1 CDS PP_2778 NC_002947.3 3163208 3164485 D similar to GB:X73124, SP:P39638, PID:414004, and GB:AL009126; identified by sequence similarity; 3-oxoacyl-ACP synthase 3163208..3164485 Pseudomonas putida KT2440 1041714 NP_744923.1 CDS PP_2779 NC_002947.3 3164487 3165569 D similar to GP:7209616; identified by sequence similarity; beta-ketoacyl synthase 3164487..3165569 Pseudomonas putida KT2440 1042646 NP_744924.1 CDS PP_2780 NC_002947.3 3165566 3166864 D similar to GP:2738156, GB:X73124, SP:P39638, PID:414004, and GB:AL009126; identified by sequence similarity; 3-oxoacyl-ACP synthase 3165566..3166864 Pseudomonas putida KT2440 1042431 NP_744925.1 CDS PP_2781 NC_002947.3 3166735 3168072 D identified by match to PFAM protein family HMM PF04198; beta-ketoacyl synthase 3166735..3168072 Pseudomonas putida KT2440 1042411 NP_744926.1 CDS PP_2782 NC_002947.3 3168103 3170982 D similar to SP:P42588; identified by sequence similarity; pyridoxalphosphate dependent aminotransferase, class III 3168103..3170982 Pseudomonas putida KT2440 1042644 NP_744927.1 CDS PP_2783 NC_002947.3 3170992 3171729 D similar to GP:1502421, SP:P25921, and PID:150653; identified by sequence similarity; 3-oxoacyl-ACP reductase 3170992..3171729 Pseudomonas putida KT2440 1041924 NP_744928.1 CDS PP_2784 NC_002947.3 3171726 3172490 D identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 3171726..3172490 Pseudomonas putida KT2440 1043736 NP_744929.1 CDS PP_2785 NC_002947.3 3172493 3173776 D hypothetical protein 3172493..3173776 Pseudomonas putida KT2440 1042641 NP_744930.1 CDS PP_2786 NC_002947.3 3173827 3174663 D hypothetical protein 3173827..3174663 Pseudomonas putida KT2440 1042661 NP_744931.1 CDS PP_2787 NC_002947.3 3174697 3177306 D identified by match to PFAM protein family HMM PF04276; transporter 3174697..3177306 Pseudomonas putida KT2440 1042645 NP_744932.1 CDS PP_2788 NC_002947.3 3177376 3177759 R similar to GP:6179679; identified by sequence similarity; MerR family transcriptional regulator complement(3177376..3177759) Pseudomonas putida KT2440 1042643 NP_744933.1 CDS PP_2789 NC_002947.3 3177923 3178528 R identified by match to PFAM protein family HMM PF03358; oxidoreductase complement(3177923..3178528) Pseudomonas putida KT2440 1042654 NP_744934.1 CDS PP_2790 NC_002947.3 3178718 3180670 R identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator complement(3178718..3180670) Pseudomonas putida KT2440 1043745 NP_744935.1 CDS PP_2791 NC_002947.3 3180801 3181931 D identified by match to PFAM protein family HMM PF01636; aminoglycoside phosphotransferase 3180801..3181931 Pseudomonas putida KT2440 1042647 NP_744936.1 CDS PP_2792 NC_002947.3 3181928 3182284 D hypothetical protein 3181928..3182284 Pseudomonas putida KT2440 1042658 NP_744937.1 CDS PP_2793 NC_002947.3 3182338 3183510 D similar to GP:6683573; identified by sequence similarity; acyl-CoA dehydrogenase 3182338..3183510 Pseudomonas putida KT2440 1042650 NP_744938.1 CDS PP_2794 NC_002947.3 3183510 3184277 D identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 3183510..3184277 Pseudomonas putida KT2440 1042655 NP_744939.1 CDS PP_2795 NC_002947.3 3184361 3186007 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3184361..3186007 Pseudomonas putida KT2440 1042652 NP_744940.1 CDS PP_2796 NC_002947.3 3186062 3186385 D similar to GP:9949357; identified by sequence similarity; hypothetical protein 3186062..3186385 Pseudomonas putida KT2440 1042673 NP_744941.1 CDS actP NC_002947.3 3186382 3188040 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 3186382..3188040 Pseudomonas putida KT2440 1042648 NP_744942.1 CDS PP_2798 NC_002947.3 3188302 3189210 R similar to GP:6759577, GB:L29436, and PID:459909; identified by sequence similarity; oxidoreductase complement(3188302..3189210) Pseudomonas putida KT2440 1042656 NP_744943.1 CDS PP_2799 NC_002947.3 3189267 3190646 R similar to GP:9802157; identified by sequence similarity; aminotransferase complement(3189267..3190646) Pseudomonas putida KT2440 1042678 NP_744944.1 CDS PP_2800 NC_002947.3 3190742 3191995 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(3190742..3191995) Pseudomonas putida KT2440 1042669 NP_744945.1 CDS PP_2801 NC_002947.3 3192033 3193457 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(3192033..3193457) Pseudomonas putida KT2440 1042676 NP_744946.1 CDS PP_2802 NC_002947.3 3193535 3194866 R identified by match to PFAM protein family HMM PF01988; amino acid permease complement(3193535..3194866) Pseudomonas putida KT2440 1042666 NP_744947.1 CDS dhaT NC_002947.3 3194879 3196063 R similar to GB:U11552, GB:U09353, PID:1314483, PID:1513077, PID:520485, and PID:558082; identified by sequence similarity; 1,3-propanediol dehydrogenase complement(3194879..3196063) Pseudomonas putida KT2440 1042663 NP_744948.1 CDS PP_2804 NC_002947.3 3196255 3197130 R similar to GP:9454064, and GP:12698395; identified by sequence similarity; alpha/beta hydrolase complement(3196255..3197130) Pseudomonas putida KT2440 1042660 NP_744949.1 CDS PP_2805 NC_002947.3 3197127 3198653 R similar to GB:Z36940, SP:P45491, and PID:535811; identified by sequence similarity; monooxygenase flavin-binding family protein complement(3197127..3198653) Pseudomonas putida KT2440 1042675 NP_744950.1 CDS PP_2806 NC_002947.3 3198930 3199511 R similar to GP:5420026; identified by sequence similarity; TetR family transcriptional regulator complement(3198930..3199511) Pseudomonas putida KT2440 1042665 NP_744951.1 CDS PP_2807 NC_002947.3 3199762 3200649 D similar to GP:11035010; identified by sequence similarity; hypothetical protein 3199762..3200649 Pseudomonas putida KT2440 1042657 NP_744952.1 CDS PP_2808 NC_002947.3 3200670 3202037 D identified by match to PFAM protein family HMM PF01494; oxidoreductase 3200670..3202037 Pseudomonas putida KT2440 1042668 NP_744953.1 CDS PP_2809 NC_002947.3 3202049 3202774 D hypothetical protein 3202049..3202774 Pseudomonas putida KT2440 1042680 NP_744954.1 CDS PP_2810 NC_002947.3 3203247 3204668 D similar to GB:X56958, SP:Q01485, PID:29491, GB:X56958, SP:Q01485, and PID:29491; identified by sequence similarity; hypothetical protein 3203247..3204668 Pseudomonas putida KT2440 1042685 NP_744955.1 CDS PP_2811 NC_002947.3 3204694 3206340 D hypothetical protein 3204694..3206340 Pseudomonas putida KT2440 1042672 NP_744956.1 CDS PP_2812 NC_002947.3 3206349 3208763 D similar to GP:9949187, and GP:12698403; identified by sequence similarity; transporter 3206349..3208763 Pseudomonas putida KT2440 1042692 NP_744957.1 CDS PP_2813 NC_002947.3 3208774 3209736 D identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 3208774..3209736 Pseudomonas putida KT2440 1042688 NP_744958.1 CDS PP_2814 NC_002947.3 3209853 3210722 R similar to GP:11035010; identified by sequence similarity; hypothetical protein complement(3209853..3210722) Pseudomonas putida KT2440 1042682 NP_744959.1 CDS PP_2815 NC_002947.3 3210961 3212214 D similar to GB:L09107, PID:152843, GB:U09891, and PID:497352; identified by sequence similarity; hypothetical protein 3210961..3212214 Pseudomonas putida KT2440 1042677 NP_744960.1 CDS PP_2816 NC_002947.3 3212273 3212839 R similar to GB:M17589, GB:M24787, GB:M24788, GB:M24791, GB:M24789, GB:M18114, GB:M20912, GB:M20911, SP:P07101, PID:339681, PID:37127, PID:548155, PID:548156, and PID:556224; identified by sequence similarity; NfxB family transcriptional regulator complement(3212273..3212839) Pseudomonas putida KT2440 1042695 NP_744961.1 CDS mexC NC_002947.3 3212931 3214067 D similar to GB:U12892, PID:530857, GB:U12892, and PID:530857; identified by sequence similarity; multidrug efflux RND membrane fusion protein MexC 3212931..3214067 Pseudomonas putida KT2440 1042696 NP_744962.1 CDS mexD NC_002947.3 3214083 3217211 D identified by match to PFAM protein family HMM PF04165; multidrug efflux RND transporter MexD 3214083..3217211 Pseudomonas putida KT2440 1042701 NP_744963.1 CDS oprJ NC_002947.3 3217208 3218614 D identified by match to PFAM protein family HMM PF02321; outer membrane protein OprJ 3217208..3218614 Pseudomonas putida KT2440 1042702 NP_744964.1 CDS nfxB NC_002947.3 3218697 3219254 R similar to GB:M17589, GB:M24787, GB:M24788, GB:M24791, GB:M24789, GB:M18114, GB:M20912, GB:M20911, SP:P07101, PID:339681, PID:37127, PID:548155, PID:548156, and PID:556224; identified by sequence similarity; NfxB family transcriptional regulator complement(3218697..3219254) Pseudomonas putida KT2440 1042689 NP_744965.1 CDS PP_2821 NC_002947.3 3219432 3219836 R hypothetical protein complement(3219432..3219836) Pseudomonas putida KT2440 1042684 NP_744966.1 CDS PP_2822 NC_002947.3 3219827 3221053 D hypothetical protein 3219827..3221053 Pseudomonas putida KT2440 1042690 NP_744967.1 CDS PP_2823 NC_002947.3 3221038 3222690 R identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer complement(3221038..3222690) Pseudomonas putida KT2440 1042686 NP_744968.1 CDS PP_2824 NC_002947.3 3223250 3223930 R similar to GP:7228269; identified by sequence similarity; TetR family transcriptional regulator complement(3223250..3223930) Pseudomonas putida KT2440 1042714 NP_744969.1 CDS PP_2825 NC_002947.3 3224000 3224467 R similar to GP:6179516, GB:X06985, GB:M23041, GB:M23042, SP:P09601, PID:35173, and PID:557552; identified by sequence similarity; integrase complement(3224000..3224467) Pseudomonas putida KT2440 1042697 NP_744970.1 CDS mexT NC_002947.3 3224501 3225415 R similar to GP:7801208, and GP:3646369; identified by sequence similarity; transcriptional regulator MexT complement(3224501..3225415) Pseudomonas putida KT2440 1042691 NP_744971.1 CDS PP_2827 NC_002947.3 3225622 3226644 D identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 3225622..3226644 Pseudomonas putida KT2440 1042713 NP_744972.1 CDS PP_2828 NC_002947.3 3227159 3228544 D hypothetical protein 3227159..3228544 Pseudomonas putida KT2440 1042705 NP_744973.1 CDS PP_2829 NC_002947.3 3228541 3229899 D identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 3228541..3229899 Pseudomonas putida KT2440 1042698 NP_744974.1 CDS PP_2830 NC_002947.3 3230027 3231379 R similar to GB:L34058, SP:P55290, PID:1381790, PID:1381792, PID:506408, GB:L34058, SP:P55290, PID:1381790, PID:1381792, and PID:506408; identified by sequence similarity; major facilitator family transporter complement(3230027..3231379) Pseudomonas putida KT2440 1042693 NP_744975.1 CDS PP_2831 NC_002947.3 3231395 3232630 R similar to GP:1150421; identified by sequence similarity; mandelate racemase complement(3231395..3232630) Pseudomonas putida KT2440 1042728 NP_744976.1 CDS PP_2832 NC_002947.3 3232810 3233757 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3232810..3233757 Pseudomonas putida KT2440 1042730 NP_744977.1 CDS PP_2833 NC_002947.3 3233785 3234756 D similar to GP:9948229; identified by sequence similarity; LysR family transcriptional regulator 3233785..3234756 Pseudomonas putida KT2440 1042700 NP_744978.1 CDS PP_2834 NC_002947.3 3234903 3236444 D similar to GP:10173103, GB:M25393, SP:P17706, and PID:804750; identified by sequence similarity; UxaA family hydrolase 3234903..3236444 Pseudomonas putida KT2440 1042715 NP_744979.1 CDS PP_2835 NC_002947.3 3236504 3237538 D identified by match to PFAM protein family HMM PF02615; Ldh family oxidoreductase 3236504..3237538 Pseudomonas putida KT2440 1042704 NP_744980.1 CDS PP_2836 NC_002947.3 3237559 3238776 D similar to GP:5881930; identified by sequence similarity; fumarylacetoacetate hydrolase 3237559..3238776 Pseudomonas putida KT2440 1042711 NP_744981.1 CDS PP_2837 NC_002947.3 3238867 3240177 D identified by match to TIGR protein family HMM TIGR00881; major facilitator family transporter 3238867..3240177 Pseudomonas putida KT2440 1042738 NP_744982.1 CDS PP_2838 NC_002947.3 3240302 3241951 D VRR-NUC domain-containing protein 3240302..3241951 Pseudomonas putida KT2440 1042739 NP_744983.1 CDS PP_2839 NC_002947.3 3241921 3244209 D similar to GP:9947855; identified by sequence similarity; DEAD/DEAH box helicase 3241921..3244209 Pseudomonas putida KT2440 1042716 NP_744984.1 CDS PP_2840 NC_002947.3 3244310 3245491 R similar to GP:9948733; identified by sequence similarity; NnrS family protein complement(3244310..3245491) Pseudomonas putida KT2440 1042712 NP_744985.1 CDS PP_2841 NC_002947.3 3245743 3246621 D similar to GP:2625019; identified by sequence similarity; phage integrase site specific recombinase 3245743..3246621 Pseudomonas putida KT2440 1042731 NP_744986.1 CDS ureD NC_002947.3 3246899 3247732 D similar to SP:Q09063, GB:J03241, GB:X14885, GB:X14886, GB:X14887, GB:X14888, GB:X14889, GB:X14890, GB:X14891, SP:P10600, PID:1200236, PID:339552, PID:37096, and PID:553517; identified by sequence similarity; urease accessory protein UreD 3246899..3247732 Pseudomonas putida KT2440 1042723 NP_744987.1 CDS ureA NC_002947.3 3247742 3248044 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 3247742..3248044 Pseudomonas putida KT2440 1042708 NP_744988.1 CDS ureB NC_002947.3 3248064 3248381 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 3248064..3248381 Pseudomonas putida KT2440 1042747 NP_744989.1 CDS ureC NC_002947.3 3248378 3250081 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3248378..3250081 Pseudomonas putida KT2440 1042749 NP_744990.1 CDS ureE NC_002947.3 3250091 3250594 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 3250091..3250594 Pseudomonas putida KT2440 1042733 NP_744991.1 CDS ureJ NC_002947.3 3250613 3251158 D similar to GP:2340845, GB:L19521, and PID:310858; identified by sequence similarity; HupE/UreJ protein 3250613..3251158 Pseudomonas putida KT2440 1042727 NP_744992.1 CDS ureF NC_002947.3 3251158 3251832 D similar to GB:D13635, PID:285983, GB:D13635, and PID:285983; identified by sequence similarity; urease accessory protein UreF 3251158..3251832 Pseudomonas putida KT2440 1042740 NP_744993.1 CDS ureG NC_002947.3 3251844 3252467 D similar to GB:M27717, GB:M73716, GB:M73717, GB:M73718, GB:M73719, GB:M73720, GB:S40234, SP:P15088, PID:179934, and PID:187442; identified by sequence similarity; urease accessory protein UreG 3251844..3252467 Pseudomonas putida KT2440 1042736 NP_744994.1 CDS PP_2850 NC_002947.3 3252514 3252627 D hypothetical protein 3252514..3252627 Pseudomonas putida KT2440 1042719 NP_744995.1 CDS PP_2851 NC_002947.3 3252710 3253438 R similar to GP:9947291; identified by sequence similarity; hypothetical protein complement(3252710..3253438) Pseudomonas putida KT2440 1042761 NP_744996.1 CDS PP_2852 NC_002947.3 3253533 3255734 R similar to GP:9947033, GB:J02694, GB:S56200, GB:M19508, GB:X15377, GB:M17170, GB:M17171, GB:M17172, GB:M17173, GB:M17174, GB:M17175, GB:M17176, SP:P05164, PID:188658, PID:188669, PID:189040, PID:2160397, PID:34719, PID:34722, PID:386956, and PID:412186; identified by sequence similarity; sulfatase complement(3253533..3255734) Pseudomonas putida KT2440 1042762 NP_744997.1 CDS PP_2853 NC_002947.3 3255870 3257150 R similar to GP:9947949; identified by sequence similarity; hypothetical protein complement(3255870..3257150) Pseudomonas putida KT2440 1042744 NP_744998.1 CDS PP_2854 NC_002947.3 3257197 3257949 R hypothetical protein complement(3257197..3257949) Pseudomonas putida KT2440 1042737 NP_744999.1 CDS PP_2855 NC_002947.3 3257995 3258675 R identified by match to PFAM protein family HMM PF03412; hypothetical protein complement(3257995..3258675) Pseudomonas putida KT2440 1042759 NP_745000.1 CDS PP_2856 NC_002947.3 3258737 3260188 R similar to GP:9947952; identified by sequence similarity; hypothetical protein complement(3258737..3260188) Pseudomonas putida KT2440 1042745 NP_745001.1 CDS PP_2857 NC_002947.3 3260238 3260816 R hypothetical protein complement(3260238..3260816) Pseudomonas putida KT2440 1042735 NP_745002.1 CDS PP_2858 NC_002947.3 3260818 3261255 R hypothetical protein complement(3260818..3261255) Pseudomonas putida KT2440 1042753 NP_745003.1 CDS PP_2859 NC_002947.3 3261553 3262122 R identified by match to TIGR protein family HMM TIGR01526; hypothetical protein complement(3261553..3262122) Pseudomonas putida KT2440 1042768 NP_745004.1 CDS PP_2860 NC_002947.3 3262119 3262685 R similar to GP:9947956; identified by sequence similarity; nicotinamide mononucleotide transporter complement(3262119..3262685) Pseudomonas putida KT2440 1042754 NP_745005.1 CDS PP_2861 NC_002947.3 3262909 3264543 R identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(3262909..3264543) Pseudomonas putida KT2440 1042742 NP_745006.1 CDS uppP NC_002947.3 3264841 3265674 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 3264841..3265674 Pseudomonas putida KT2440 1042766 NP_745007.1 CDS PP_2863 NC_002947.3 3265703 3266080 D similar to GP:9947958; identified by sequence similarity; hypothetical protein 3265703..3266080 Pseudomonas putida KT2440 1042758 NP_745008.1 CDS PP_2864 NC_002947.3 3266139 3266510 R similar to GP:9947997, and GP:9947997; identified by sequence similarity; hypothetical protein complement(3266139..3266510) Pseudomonas putida KT2440 1042750 NP_745009.1 CDS PP_2865 NC_002947.3 3266491 3267393 R similar to GP:9947959; identified by sequence similarity; LysR family transcriptional regulator complement(3266491..3267393) Pseudomonas putida KT2440 1042779 NP_745010.1 CDS acpD NC_002947.3 3267527 3268138 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 3267527..3268138 Pseudomonas putida KT2440 1042781 NP_745011.1 CDS PP_2867 NC_002947.3 3268207 3269409 R identified by match to PFAM protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase complement(3268207..3269409) Pseudomonas putida KT2440 1042767 NP_745012.1 CDS PP_2868 NC_002947.3 3269490 3270089 R identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator complement(3269490..3270089) Pseudomonas putida KT2440 1042765 NP_745013.1 CDS PP_2869 NC_002947.3 3270129 3272081 R identified by match to TIGR protein family HMM TIGR00137; NADH:flavin oxidoreductase complement(3270129..3272081) Pseudomonas putida KT2440 1042764 NP_745014.1 CDS PP_2870 NC_002947.3 3272199 3273299 D similar to GB:D10570, GB:M83215, GB:S60998, SP:Q01196, PID:1932820, PID:530135, PID:557639, PID:608133, PID:966995, PID:966997, and PID:966999; identified by sequence similarity; PotD/PotF family extracellular solute-binding protein 3272199..3273299 Pseudomonas putida KT2440 1042778 NP_745015.1 CDS PP_2871 NC_002947.3 3273322 3274077 D identified by match to TIGR protein family HMM TIGR01086; aldolase 3273322..3274077 Pseudomonas putida KT2440 1042763 NP_745016.1 CDS PP_2872 NC_002947.3 3274144 3275124 D identified by match to PFAM protein family HMM PF00892; hypothetical protein 3274144..3275124 Pseudomonas putida KT2440 1042769 NP_745017.1 CDS PP_2873 NC_002947.3 3275195 3275515 D similar to SP:Q02470, PID:149582, SP:Q02470, and PID:149582; identified by sequence similarity; hypothetical protein 3275195..3275515 Pseudomonas putida KT2440 1042790 NP_745018.1 CDS PP_2874 NC_002947.3 3275984 3276295 D hypothetical protein 3275984..3276295 Pseudomonas putida KT2440 1042782 NP_745019.1 CDS PP_2875 NC_002947.3 3276342 3276692 R hypothetical protein complement(3276342..3276692) Pseudomonas putida KT2440 1042773 NP_745020.1 CDS ampC NC_002947.3 3276975 3278117 R similar to GB:L10338, GB:L16242, SP:Q07699, PID:307415, PID:450603, and PID:619592; identified by sequence similarity; beta-lactamase complement(3276975..3278117) Pseudomonas putida KT2440 1042772 NP_745021.1 CDS PP_2877 NC_002947.3 3278224 3279225 D identified by match to TIGR protein family HMM TIGR00832; bile acid/Na+ symporter family protein 3278224..3279225 Pseudomonas putida KT2440 1042788 NP_745022.1 CDS PP_2878 NC_002947.3 3279248 3279430 D hypothetical protein 3279248..3279430 Pseudomonas putida KT2440 1042784 NP_745023.1 CDS PP_2879 NC_002947.3 3279483 3280076 R hypothetical protein complement(3279483..3280076) Pseudomonas putida KT2440 1042777 NP_745024.1 CDS PP_2880 NC_002947.3 3280063 3280626 R identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator complement(3280063..3280626) Pseudomonas putida KT2440 1042770 NP_745025.1 CDS PP_2881 NC_002947.3 3280716 3281447 D identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 3280716..3281447 Pseudomonas putida KT2440 1042802 NP_745026.1 CDS PP_2882 NC_002947.3 3281476 3282090 D similar to SP:Q51948; identified by sequence similarity; DSBA oxidoreductase 3281476..3282090 Pseudomonas putida KT2440 1042791 NP_745027.1 CDS PP_2883 NC_002947.3 3282063 3282362 R hypothetical protein complement(3282063..3282362) Pseudomonas putida KT2440 1042783 NP_745028.1 CDS PP_2884 NC_002947.3 3282365 3282910 R similar to GB:J02732, SP:P12047, PID:143366, and GB:AL009126; identified by sequence similarity; XRE family transcriptional regulator complement(3282365..3282910) Pseudomonas putida KT2440 1042808 NP_745029.1 CDS PP_2885 NC_002947.3 3282992 3284221 R identified by match to PFAM protein family HMM PF03600; major facilitator superfamily transporter complement(3282992..3284221) Pseudomonas putida KT2440 1042799 NP_745030.1 CDS PP_2886 NC_002947.3 3284279 3284812 R similar to GP:10178909, and SP:P08732; identified by sequence similarity; cytochrome B561 complement(3284279..3284812) Pseudomonas putida KT2440 1042786 NP_745031.1 CDS PP_2887 NC_002947.3 3284809 3285861 R similar to GB:U07497, SP:P01621, SP:P04207, PID:470530, PID:470562, PID:470568, PID:470570, PID:470572, PID:470574, PID:470578, PID:470580, PID:470582, PID:470584, PID:470588, PID:470590, PID:553486, PID:560766, PID:619431, PID:619617, PID:619761, PID:619767, PID:619768, PID:619769, PID:681900, PID:722416, PID:722424, PID:722438, PID:722454, PID:722516, PID:722576, PID:722582, PID:722584, PID:860992, PID:860996, PID:860998, GB:U08839, GB:Z46797, SP:Q03405, PID:512464, PID:517198, and PID:533376; identified by sequence similarity; catalase domain-containing protein complement(3284809..3285861) Pseudomonas putida KT2440 1042787 NP_745032.1 CDS PP_2888 NC_002947.3 3285986 3286507 D similar to GP:8895713, and GP:8895713; identified by sequence similarity; ECF subfamily RNA polymerase sigma-24 subunit 3285986..3286507 Pseudomonas putida KT2440 1042803 NP_745033.1 CDS PP_2889 NC_002947.3 3286504 3287256 D similar to GP:8895711, and GP:8895711; identified by sequence similarity; transmembrane anti-sigma factor 3286504..3287256 Pseudomonas putida KT2440 1042811 NP_745034.1 CDS xthA NC_002947.3 3287297 3288109 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(3287297..3288109) Pseudomonas putida KT2440 1042796 NP_745035.1 CDS PP_2891 NC_002947.3 3288245 3288922 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 3288245..3288922 Pseudomonas putida KT2440 1042820 NP_745036.1 CDS PP_2892 NC_002947.3 3288966 3290717 D identified by match to PFAM protein family HMM PF03561; surface antigen (D15) 3288966..3290717 Pseudomonas putida KT2440 1042821 NP_745037.1 CDS PP_2893 NC_002947.3 3290714 3294388 D similar to GP:9948600; identified by sequence similarity; hypothetical protein 3290714..3294388 Pseudomonas putida KT2440 1042812 NP_745038.1 CDS PP_2894 NC_002947.3 3294408 3294962 R hypothetical protein complement(3294408..3294962) Pseudomonas putida KT2440 1042805 NP_745039.1 CDS PP_2895 NC_002947.3 3295038 3295682 R similar to SP:P27126, GB:M80599, PID:146654, PID:466767, GB:U00096, PID:1790059, SP:P27126, GB:M80599, PID:146654, PID:466767, GB:U00096, and PID:1790059; identified by sequence similarity; hypothetical protein complement(3295038..3295682) Pseudomonas putida KT2440 1042801 NP_745040.1 CDS PP_2896 NC_002947.3 3295748 3296128 R hypothetical protein complement(3295748..3296128) Pseudomonas putida KT2440 1042800 NP_745041.1 CDS PP_2897 NC_002947.3 3296149 3296808 D hypothetical protein 3296149..3296808 Pseudomonas putida KT2440 1042829 NP_745042.1 CDS PP_2898 NC_002947.3 3296380 3296871 R hypothetical protein complement(3296380..3296871) Pseudomonas putida KT2440 1042824 NP_745043.1 CDS PP_2899 NC_002947.3 3296990 3297178 D hypothetical protein 3296990..3297178 Pseudomonas putida KT2440 1042830 NP_745044.1 CDS PP_2900 NC_002947.3 3297215 3297589 R hypothetical protein complement(3297215..3297589) Pseudomonas putida KT2440 1042831 NP_745045.1 CDS PP_2901 NC_002947.3 3297781 3300099 D similar to GB:X52138, GB:M36072, GB:X06705, GB:X61923, SP:P11518, PID:337495, PID:34203, PID:35512, and PID:36647; identified by sequence similarity; penicillin amidase 3297781..3300099 Pseudomonas putida KT2440 1042814 NP_745046.1 CDS PP_2902 NC_002947.3 3300181 3300903 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(3300181..3300903) Pseudomonas putida KT2440 1042854 NP_745047.1 CDS ppiB NC_002947.3 3300900 3301400 R identified by match to PFAM protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B complement(3300900..3301400) Pseudomonas putida KT2440 1042807 NP_745048.1 CDS glnS NC_002947.3 3301649 3303352 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3301649..3303352 Pseudomonas putida KT2440 1042815 NP_745049.1 CDS cysS NC_002947.3 3303362 3304744 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3303362..3304744 Pseudomonas putida KT2440 1042809 NP_745050.1 CDS PP_2906 NC_002947.3 3304776 3306167 R similar to GB:L31579, and PID:468364; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase complement(3304776..3306167) Pseudomonas putida KT2440 1042842 NP_745051.1 CDS PP_2907 NC_002947.3 3306145 3306825 R similar to GB:L31579, and PID:468364; identified by sequence similarity; winged helix family two component transcriptional regulator complement(3306145..3306825) Pseudomonas putida KT2440 1042845 NP_745052.1 CDS PP_2908 NC_002947.3 3306900 3307595 R regulator of gab gene expression; DNA-binding transcriptional regulator CsiR complement(3306900..3307595) Pseudomonas putida KT2440 1042832 NP_745053.1 CDS PP_2909 NC_002947.3 3307791 3308768 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 3307791..3308768 Pseudomonas putida KT2440 1042846 NP_745054.1 CDS PP_2910 NC_002947.3 3308883 3310133 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 3308883..3310133 Pseudomonas putida KT2440 1042825 NP_745055.1 CDS PP_2911 NC_002947.3 3310284 3311675 D similar to GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; GABA permease 3310284..3311675 Pseudomonas putida KT2440 1042844 NP_745056.1 CDS PP_2912 NC_002947.3 3311763 3312656 D identified by match to PFAM protein family HMM PF01163; hypothetical protein 3311763..3312656 Pseudomonas putida KT2440 1042827 NP_745057.1 CDS hemB-1 NC_002947.3 3312818 3313792 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3312818..3313792 Pseudomonas putida KT2440 1042819 NP_745058.1 CDS proP NC_002947.3 3313951 3315453 D similar to GP:1661219; identified by sequence similarity; proline/glycine betaine transporter 3313951..3315453 Pseudomonas putida KT2440 1042847 NP_745059.1 CDS PP_2915 NC_002947.3 3315454 3316155 R similar to GP:9946095; identified by sequence similarity; hypothetical protein complement(3315454..3316155) Pseudomonas putida KT2440 1042866 NP_745060.1 CDS ribE-2 NC_002947.3 3316165 3316794 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(3316165..3316794) Pseudomonas putida KT2440 1042834 NP_745061.1 CDS PP_2917 NC_002947.3 3316834 3316974 R hypothetical protein complement(3316834..3316974) Pseudomonas putida KT2440 1042892 NP_745062.1 CDS PP_2918 NC_002947.3 3316967 3319033 R similar to GP:6724082, and GP:6724082; identified by sequence similarity; trehalose synthase complement(3316967..3319033) Pseudomonas putida KT2440 1042893 NP_745063.1 CDS PP_2919 NC_002947.3 3319225 3320142 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(3319225..3320142) Pseudomonas putida KT2440 1042855 NP_745064.1 CDS PP_2920 NC_002947.3 3320263 3321021 D identified by match to PFAM protein family HMM PF03746; hypothetical protein 3320263..3321021 Pseudomonas putida KT2440 1042851 NP_745065.1 CDS PP_2921 NC_002947.3 3321060 3322001 D identified by match to TIGR protein family HMM TIGR00370; allophanate hydrolase subunit 1 3321060..3322001 Pseudomonas putida KT2440 1042840 NP_745066.1 CDS PP_2922 NC_002947.3 3321998 3322969 D identified by match to PFAM protein family HMM PF02626; urea amidolyase 3321998..3322969 Pseudomonas putida KT2440 1042908 NP_745067.1 CDS PP_2923 NC_002947.3 3323032 3323889 R similar to GP:5918205, and GP:5918205; identified by sequence similarity; hypothetical protein complement(3323032..3323889) Pseudomonas putida KT2440 1042874 NP_745068.1 CDS PP_2924 NC_002947.3 3323880 3325130 R similar to SP:P03805, GB:J01611, PID:145265, PID:41483, PID:536996, GB:U00096, PID:1790595, SP:P03805, GB:J01611, PID:145265, PID:41483, PID:536996, GB:U00096, and PID:1790595; identified by sequence similarity; radical SAM domain-containing protein complement(3323880..3325130) Pseudomonas putida KT2440 1042878 NP_745069.1 CDS mqo-3 NC_002947.3 3325245 3326864 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 3325245..3326864 Pseudomonas putida KT2440 1042853 NP_745070.1 CDS PP_2926 NC_002947.3 3326874 3328202 R identified by match to PFAM protein family HMM PF00984; UDP-glucose dehydrogenase complement(3326874..3328202) Pseudomonas putida KT2440 1042906 NP_745071.1 CDS PP_2927 NC_002947.3 3328447 3329493 D identified by match to PFAM protein family HMM PF02390; hypothetical protein 3328447..3329493 Pseudomonas putida KT2440 1042902 NP_745072.1 CDS PP_2928 NC_002947.3 3329624 3330868 R identified by match to PFAM protein family HMM PF02896; saccharopine dehydrogenase complement(3329624..3330868) Pseudomonas putida KT2440 1042869 NP_745073.1 CDS nspC NC_002947.3 3330901 3331998 R similar to GB:M80629, and PID:180492; identified by sequence similarity; carboxynorspermidine decarboxylase complement(3330901..3331998) Pseudomonas putida KT2440 1042885 NP_745074.1 CDS PP_2930 NC_002947.3 3332184 3333101 R similar to GP:57225, and SP:P17324; identified by sequence similarity; L-serine dehydratase complement(3332184..3333101) Pseudomonas putida KT2440 1042915 NP_745075.1 CDS PP_2931 NC_002947.3 3333098 3333922 R similar to GP:5459226, and GP:5459226; identified by sequence similarity; hypothetical protein complement(3333098..3333922) Pseudomonas putida KT2440 1042912 NP_745076.1 CDS PP_2932 NC_002947.3 3333855 3335558 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(3333855..3335558) Pseudomonas putida KT2440 1042917 NP_745077.1 CDS PP_2933 NC_002947.3 3335750 3336592 R YghU; B2989; one of eight glutathione transferases from E. coli; glutathione S-transferase complement(3335750..3336592) Pseudomonas putida KT2440 1042918 NP_745078.1 CDS PP_2934 NC_002947.3 3336794 3337840 D identified by match to TIGR protein family HMM TIGR01738; hypothetical protein 3336794..3337840 Pseudomonas putida KT2440 1042901 NP_745079.1 CDS PP_2935 NC_002947.3 3337802 3338995 R identified by match to PFAM protein family HMM PF00083; major facilitator superfamily transporter complement(3337802..3338995) Pseudomonas putida KT2440 1042904 NP_745080.1 CDS PP_2936 NC_002947.3 3339238 3340824 R similar to GP:9947963; identified by sequence similarity; ABC transporter ATP-binding protein complement(3339238..3340824) Pseudomonas putida KT2440 1042886 NP_745081.1 CDS PP_2937 NC_002947.3 3340857 3341276 R similar to GP:13361683, GB:D26350, and PID:450469; identified by sequence similarity; integrase complement(3340857..3341276) Pseudomonas putida KT2440 1042898 NP_745082.1 CDS PP_2938 NC_002947.3 3341452 3342138 R similar to GP:9657729; identified by sequence similarity; OsmC family protein complement(3341452..3342138) Pseudomonas putida KT2440 1042897 NP_745083.1 CDS PP_2939 NC_002947.3 3342445 3342699 R similar to GP:4469318, and GP:4469318; identified by sequence similarity; hypothetical protein complement(3342445..3342699) Pseudomonas putida KT2440 1042925 NP_745084.1 CDS PP_2940 NC_002947.3 3342719 3343003 R similar to SP:P46147, GB:M34482, GB:X74929, GB:M77025, GB:M26324, GB:M26512, GB:X12882, GB:M26513, GB:X74981, SP:P05787, GB:U76549, PID:181400, PID:181573, PID:307083, PID:400416, PID:400418, and PID:553163; identified by sequence similarity; hypothetical protein complement(3342719..3343003) Pseudomonas putida KT2440 1042927 NP_745085.1 CDS PP_2941 NC_002947.3 3344340 3345125 R similar to GP:9187583, and GP:9187583; identified by sequence similarity; hypothetical protein complement(3344340..3345125) Pseudomonas putida KT2440 1042928 NP_745086.1 CDS PP_2942 NC_002947.3 3345126 3346496 R identified by match to PFAM protein family HMM PF00072; response regulator complement(3345126..3346496) Pseudomonas putida KT2440 1042929 NP_745087.1 CDS PP_2943 NC_002947.3 3346695 3347693 D identified by match to PFAM protein family HMM PF03150; cytochrome c551 peroxidase 3346695..3347693 Pseudomonas putida KT2440 1042919 NP_745088.1 CDS PP_2944 NC_002947.3 3347690 3349504 D identified by match to PFAM protein family HMM PF02518; sensor histidine kinase 3347690..3349504 Pseudomonas putida KT2440 1042943 NP_745089.1 CDS PP_2945 NC_002947.3 3349387 3350904 D identified by match to PFAM protein family HMM PF02518; sensor histidine kinase/response regulator 3349387..3350904 Pseudomonas putida KT2440 1042914 NP_745090.1 CDS PP_2946 NC_002947.3 3351062 3351475 D similar to GB:L04282, GB:U09851, PID:388319, and PID:495574; identified by sequence similarity; peptidyl-tRNA hydrolase domain-containing protein 3351062..3351475 Pseudomonas putida KT2440 1042913 NP_745091.1 CDS PP_2947 NC_002947.3 3351736 3352107 D transcriptional regulator MvaT, P16 subunit 3351736..3352107 Pseudomonas putida KT2440 1042940 NP_745092.1 CDS PP_2948 NC_002947.3 3352249 3353631 R identified by match to PFAM protein family HMM PF00155; GntR family transcriptional regulator complement(3352249..3353631) Pseudomonas putida KT2440 1042935 NP_745093.1 CDS PP_2949 NC_002947.3 3353753 3354619 D identified by match to PFAM protein family HMM PF00892; hypothetical protein 3353753..3354619 Pseudomonas putida KT2440 1042930 NP_745094.1 CDS PP_2950 NC_002947.3 3354732 3355208 R similar to GP:9951720; identified by sequence similarity; hypothetical protein complement(3354732..3355208) Pseudomonas putida KT2440 1042939 NP_745095.1 CDS PP_2951 NC_002947.3 3355262 3355828 R similar to GP:3293540; identified by sequence similarity; TetR family transcriptional regulator complement(3355262..3355828) Pseudomonas putida KT2440 1042944 NP_745096.1 CDS PP_2952 NC_002947.3 3355954 3356844 R similar to GP:9949718; identified by sequence similarity; LysR family transcriptional regulator complement(3355954..3356844) Pseudomonas putida KT2440 1042921 NP_745097.1 CDS PP_2953 NC_002947.3 3356950 3357957 D identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 3356950..3357957 Pseudomonas putida KT2440 1042922 NP_745098.1 CDS PP_2954 NC_002947.3 3358072 3358458 D similar to SP:P28816, GB:J01830, PID:154849, GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, and PID:758071; identified by sequence similarity; hypothetical protein 3358072..3358458 Pseudomonas putida KT2440 1042950 NP_745099.1 CDS PP_2955 NC_002947.3 3358768 3359679 R similar to GB:L19084, SP:P33668, PID:304942, GB:U00096, PID:1773180, and PID:1786707; identified by sequence similarity; magnesium/cobalt transporter CorA family protein complement(3358768..3359679) Pseudomonas putida KT2440 1042952 NP_745100.1 CDS PP_2956 NC_002947.3 3359683 3361263 R similar to GB:X57130, and PID:296288; identified by sequence similarity; ribosomal protein S6 modification protein-like protein complement(3359683..3361263) Pseudomonas putida KT2440 1042955 NP_745101.1 CDS PP_2957 NC_002947.3 3361358 3362452 D identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 3361358..3362452 Pseudomonas putida KT2440 1042948 NP_745102.1 CDS PP_2958 NC_002947.3 3362544 3362798 R similar to SP:P37687; identified by sequence similarity; glutaredoxin complement(3362544..3362798) Pseudomonas putida KT2440 1042977 NP_745103.1 CDS PP_2959 NC_002947.3 3362812 3363330 R similar to GB:X78031, SP:Q11130, PID:516293, PID:520464, and PID:520525; identified by sequence similarity; alkylhydroperoxidase complement(3362812..3363330) Pseudomonas putida KT2440 1042957 NP_745104.1 CDS PP_2960 NC_002947.3 3363361 3364281 D similar to GP:9106236; identified by sequence similarity; AraC family transcriptional regulator 3363361..3364281 Pseudomonas putida KT2440 1042933 NP_745105.1 CDS PP_2961 NC_002947.3 3364344 3365222 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(3364344..3365222) Pseudomonas putida KT2440 1042963 NP_745106.1 CDS PP_2962 NC_002947.3 3365330 3366331 D similar to GP:6808410; identified by sequence similarity; zinc-containing alcohol dehydrogenase 3365330..3366331 Pseudomonas putida KT2440 1042973 NP_745107.1 CDS PP_2963 NC_002947.3 3366350 3366532 R hypothetical protein complement(3366350..3366532) Pseudomonas putida KT2440 1042956 NP_745108.1 CDS tnpA NC_002947.3 3366692 3369706 D similar to GP:1495195, GB:U04735, SP:P48723, and PID:460148; identified by sequence similarity; Tn4652, transposase 3366692..3369706 Pseudomonas putida KT2440 1042972 NP_745109.1 CDS PP_2965 NC_002947.3 3369715 3370077 D similar to GP:3805951, and GP:6625482; identified by sequence similarity; Tn4652, tnpA repressor protein TnpC 3369715..3370077 Pseudomonas putida KT2440 1042991 NP_745110.1 CDS PP_2966 NC_002947.3 3370094 3370264 R hypothetical protein complement(3370094..3370264) Pseudomonas putida KT2440 1042975 NP_745111.1 CDS PP_2967 NC_002947.3 3370469 3370633 R similar to GP:7363298; identified by sequence similarity; hypothetical protein complement(3370469..3370633) Pseudomonas putida KT2440 1042942 NP_745112.1 CDS PP_2968 NC_002947.3 3370638 3371771 R similar to SP:P18021, SP:P06615, GB:X04967, PID:144169, PID:147038, SP:P18021, SP:P06615, GB:X04967, PID:144169, and PID:147038; identified by sequence similarity; hypothetical protein complement(3370638..3371771) Pseudomonas putida KT2440 1042984 NP_745113.1 CDS PP_2969 NC_002947.3 3371782 3372069 R similar to SP:P09123, PID:452398, GB:U04815, GB:U04818, GB:U04824, GB:U04816, GB:U04817, SP:P21127, PID:189481, PID:507158, PID:507160, PID:507162, PID:507164, PID:507166, PID:507168, PID:507427, and PID:507429; identified by sequence similarity; hypothetical protein complement(3371782..3372069) Pseudomonas putida KT2440 1042982 NP_745114.1 CDS PP_2970 NC_002947.3 3372188 3372547 D hypothetical protein 3372188..3372547 Pseudomonas putida KT2440 1042978 NP_745115.1 CDS PP_2971 NC_002947.3 3372839 3373681 R similar to GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, GB:Z14228, GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, and GB:Z14228; identified by sequence similarity; IS1246 transposase complement(3372839..3373681) Pseudomonas putida KT2440 1042988 NP_745116.1 CDS PP_2972 NC_002947.3 3373712 3374011 D hypothetical protein 3373712..3374011 Pseudomonas putida KT2440 1042992 NP_745117.1 CDS dgkA-2 NC_002947.3 3374050 3374403 D similar to SP:P00556; identified by sequence similarity; diacylglycerol kinase 3374050..3374403 Pseudomonas putida KT2440 1042962 NP_745118.1 CDS PP_2974 NC_002947.3 3374438 3376090 D hypothetical protein 3374438..3376090 Pseudomonas putida KT2440 1042965 NP_745119.1 CDS PP_2975 NC_002947.3 3376156 3376422 D similar to GP:10880734, and GP:2645860; identified by sequence similarity; transposase 3376156..3376422 Pseudomonas putida KT2440 1043001 NP_745120.1 CDS PP_2976 NC_002947.3 3376570 3376881 D similar to GP:5524528; identified by sequence similarity; Tn4652, transposase subunit A 3376570..3376881 Pseudomonas putida KT2440 1043003 NP_745121.1 CDS PP_2977 NC_002947.3 3376878 3377783 D similar to GP:5524529; identified by sequence similarity; Tn4652, transposase subunit B 3376878..3377783 Pseudomonas putida KT2440 1042997 NP_745122.1 CDS PP_2978 NC_002947.3 3377949 3378350 D hypothetical protein 3377949..3378350 Pseudomonas putida KT2440 1043000 NP_745123.1 CDS PP_2979 NC_002947.3 3378299 3378727 R hypothetical protein complement(3378299..3378727) Pseudomonas putida KT2440 1043021 NP_745124.1 CDS PP_2980 NC_002947.3 3378731 3378967 R similar to SP:P18539, PID:47224, SP:P18539, and PID:47224; identified by sequence similarity; hypothetical protein complement(3378731..3378967) Pseudomonas putida KT2440 1043005 NP_745125.1 CDS PP_2981 NC_002947.3 3379174 3380145 R similar to GP:5524530; identified by sequence similarity; Tn4652, cointegrate resolution protein S complement(3379174..3380145) Pseudomonas putida KT2440 1043004 NP_745126.1 CDS PP_2982 NC_002947.3 3380326 3381324 D similar to GP:5524531, and GP:5524531; identified by sequence similarity; Tn4652, cointegrate resolution protein T 3380326..3381324 Pseudomonas putida KT2440 1043020 NP_745127.1 CDS PP_2983 NC_002947.3 3381352 3382008 D hypothetical protein 3381352..3382008 Pseudomonas putida KT2440 1043029 NP_745128.1 CDS PP_2984 NC_002947.3 3381989 3382468 D hypothetical protein 3381989..3382468 Pseudomonas putida KT2440 1043006 NP_745129.1 CDS PP_2985 NC_002947.3 3383517 3384062 R similar to GB:X14831, GB:J03858, GB:S71326, GB:M76741, GB:M76742, GB:M76743, GB:M76744, GB:D12502, GB:M72238, GB:D90311, GB:D90313, SP:P13688, PID:179435, PID:179437, PID:219499, and PID:219501; identified by sequence similarity; hypothetical protein complement(3383517..3384062) Pseudomonas putida KT2440 1043019 NP_745130.1 CDS PP_2986 NC_002947.3 3384364 3385413 R similar to SP:P80064, and SP:P80064; identified by sequence similarity; oxidoreductase complement(3384364..3385413) Pseudomonas putida KT2440 1043053 NP_745131.1 CDS PP_2987 NC_002947.3 3385614 3386177 R identified by match to PFAM protein family HMM PF03551; hypothetical protein complement(3385614..3386177) Pseudomonas putida KT2440 1043032 NP_745132.1 CDS PP_2988 NC_002947.3 3386154 3387170 D similar to GP:3293547; identified by sequence similarity; zinc-containing alcohol dehydrogenase 3386154..3387170 Pseudomonas putida KT2440 1042989 NP_745133.1 CDS PP_2989 NC_002947.3 3387217 3388011 D identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase 3387217..3388011 Pseudomonas putida KT2440 1043048 NP_745134.1 CDS PP_2990 NC_002947.3 3388149 3388628 D identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 3388149..3388628 Pseudomonas putida KT2440 1043036 NP_745135.1 CDS PP_2991 NC_002947.3 3388644 3389675 R hypothetical protein complement(3388644..3389675) Pseudomonas putida KT2440 1043028 NP_745136.1 CDS PP_2992 NC_002947.3 3389685 3390506 R identified by match to TIGR protein family HMM TIGR01382; hypothetical protein complement(3389685..3390506) Pseudomonas putida KT2440 1043014 NP_745137.1 CDS PP_2993 NC_002947.3 3390574 3390714 D hypothetical protein 3390574..3390714 Pseudomonas putida KT2440 1043045 NP_745138.1 CDS PP_2994 NC_002947.3 3390788 3392044 D identified by match to PFAM protein family HMM PF00724; NADH:flavin oxidoreductase 3390788..3392044 Pseudomonas putida KT2440 1043071 NP_745139.1 CDS PP_2995 NC_002947.3 3392212 3392754 D similar to GP:10173629, GB:L28824, GB:S80267, SP:P43405, PID:479013, PID:496900, and PID:515871; identified by sequence similarity; DNA topology modulation kinase FlaR 3392212..3392754 Pseudomonas putida KT2440 1043010 NP_745140.1 CDS PP_2996 NC_002947.3 3392817 3393275 R hypothetical protein complement(3392817..3393275) Pseudomonas putida KT2440 1043078 NP_745141.1 CDS PP_2997 NC_002947.3 3393504 3394403 R similar to GB:X56667, GB:X56668, SP:P22676, PID:29636, PID:695356, and PID:825634; identified by sequence similarity; LysR family transcriptional regulator complement(3393504..3394403) Pseudomonas putida KT2440 1043072 NP_745142.1 CDS PP_2998 NC_002947.3 3394497 3395444 D identified by match to TIGR protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 3394497..3395444 Pseudomonas putida KT2440 1043055 NP_745143.1 CDS PP_2999 NC_002947.3 3395441 3395839 D identified by match to PFAM protein family HMM PF00903; glyoxalase 3395441..3395839 Pseudomonas putida KT2440 1043076 NP_745144.1 CDS PP_3000 NC_002947.3 3395836 3396291 D similar to SP:P37961, PID:396223, and PID:551717; identified by sequence similarity; acyl dehydratase MaoC 3395836..3396291 Pseudomonas putida KT2440 1043111 NP_745145.1 CDS PP_3001 NC_002947.3 3396288 3397520 D identified by match to PFAM protein family HMM PF02515; CAIB/BAIF family protein 3396288..3397520 Pseudomonas putida KT2440 1043080 NP_745146.1 CDS aroE-2 NC_002947.3 3397517 3398335 D similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; shikimate 5-dehydrogenase 3397517..3398335 Pseudomonas putida KT2440 1043090 NP_745147.1 CDS aroQ-3 NC_002947.3 3398340 3398777 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3398340..3398777 Pseudomonas putida KT2440 1043031 NP_745148.1 CDS PP_3004 NC_002947.3 3399019 3399276 D hypothetical protein 3399019..3399276 Pseudomonas putida KT2440 1043093 NP_745149.1 CDS PP_3005 NC_002947.3 3399329 3400030 R hypothetical protein complement(3399329..3400030) Pseudomonas putida KT2440 1043105 NP_745150.1 CDS PP_3006 NC_002947.3 3400018 3400566 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(3400018..3400566) Pseudomonas putida KT2440 1043082 NP_745151.1 CDS PP_3007 NC_002947.3 3400670 3401197 R hypothetical protein complement(3400670..3401197) Pseudomonas putida KT2440 1043098 NP_745152.1 CDS PP_3008 NC_002947.3 3401414 3401701 D similar to GB:M17087, GB:M54968, GB:M35504, GB:M34904, GB:M35505, GB:K03209, SP:P01112, SP:P01118, PID:1335026, PID:1335027, PID:180594, PID:186764, PID:190910, PID:553519, PID:553633, PID:553635, PID:553636, and PID:825697; identified by sequence similarity; hypothetical protein 3401414..3401701 Pseudomonas putida KT2440 1043100 NP_745153.1 CDS PP_3009 NC_002947.3 3401810 3401908 D hypothetical protein 3401810..3401908 Pseudomonas putida KT2440 1043102 NP_745154.1 CDS PP_3010 NC_002947.3 3402105 3402473 D hypothetical protein 3402105..3402473 Pseudomonas putida KT2440 1043109 NP_745155.1 CDS PP_3011 NC_002947.3 3402625 3402984 D hypothetical protein 3402625..3402984 Pseudomonas putida KT2440 1043067 NP_745156.1 CDS PP_3012 NC_002947.3 3403038 3403166 D hypothetical protein 3403038..3403166 Pseudomonas putida KT2440 1043106 NP_745157.1 CDS PP_3013 NC_002947.3 3403210 3403461 R hypothetical protein complement(3403210..3403461) Pseudomonas putida KT2440 1043183 NP_745158.1 CDS PP_3014 NC_002947.3 3403580 3403939 D hypothetical protein 3403580..3403939 Pseudomonas putida KT2440 1043145 NP_745159.1 CDS PP_3015 NC_002947.3 3404307 3404510 D identified by match to PFAM protein family HMM PF00501; medium chain acyl-CoA ligase 3404307..3404510 Pseudomonas putida KT2440 1043135 NP_745160.1 CDS PP_3016 NC_002947.3 3404647 3405480 D similar to GB:X53586, GB:S66196, GB:X59512, SP:P23229, PID:33942, PID:33944, GB:K01884, SP:P01124, and PID:179498; identified by sequence similarity; lipopolysaccharide core biosynthesis protein 3404647..3405480 Pseudomonas putida KT2440 1043136 NP_745161.1 CDS ogt NC_002947.3 3405551 3406051 D similar to GP:7385145; identified by sequence similarity; methylated-DNA--protein-cysteine methyltransferase 3405551..3406051 Pseudomonas putida KT2440 1043157 NP_745162.1 CDS PP_3018 NC_002947.3 3406056 3406298 R hypothetical protein complement(3406056..3406298) Pseudomonas putida KT2440 1043149 NP_745163.1 CDS PP_3019 NC_002947.3 3406295 3407038 R identified by match to PFAM protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3406295..3407038) Pseudomonas putida KT2440 1043089 NP_745164.1 CDS PP_3020 NC_002947.3 3407253 3407978 D similar to SP:Q05528, GB:X62073, PID:48986, SP:Q05528, GB:X62073, and PID:48986; identified by sequence similarity; serine/threonine protein phosphatase 3407253..3407978 Pseudomonas putida KT2440 1043234 NP_745165.1 CDS PP_3021 NC_002947.3 3407926 3408540 R identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE complement(3407926..3408540) Pseudomonas putida KT2440 1043200 NP_745166.1 CDS PP_3022 NC_002947.3 3408622 3409431 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(3408622..3409431) Pseudomonas putida KT2440 1043167 NP_745167.1 CDS PP_3023 NC_002947.3 3409505 3409939 D identified by match to TIGR protein family HMM TIGR00949; amino acid efflux protein 3409505..3409939 Pseudomonas putida KT2440 1043158 NP_745168.1 CDS PP_3024 NC_002947.3 3409967 3411163 D identified by match to PFAM protein family HMM PF02518; hypothetical protein 3409967..3411163 Pseudomonas putida KT2440 1043152 NP_745169.1 CDS PP_3025 NC_002947.3 3412201 3412821 R identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE complement(3412201..3412821) Pseudomonas putida KT2440 1043148 NP_745170.1 CDS PP_3026 NC_002947.3 3412988 3414613 D similar to SP:Q01624, PID:46680, SP:Q01624, and PID:46680; identified by sequence similarity; phage recombinase 3412988..3414613 Pseudomonas putida KT2440 1043197 NP_745171.1 CDS PP_3027 NC_002947.3 3414886 3415104 R similar to GP:4063814; identified by sequence similarity; hypothetical protein complement(3414886..3415104) Pseudomonas putida KT2440 1043139 NP_745172.1 CDS PP_3028 NC_002947.3 3415097 3415411 R hypothetical protein complement(3415097..3415411) Pseudomonas putida KT2440 1043166 NP_745173.1 CDS PP_3029 NC_002947.3 3415408 3417237 R identified by match to PFAM protein family HMM PF00145; DNA cytosine methyltransferase complement(3415408..3417237) Pseudomonas putida KT2440 1043201 NP_745174.1 CDS PP_3030 NC_002947.3 3417234 3418037 R hypothetical protein complement(3417234..3418037) Pseudomonas putida KT2440 1043328 NP_745175.1 CDS PP_3031 NC_002947.3 3418091 3418408 R similar to GB:M77836, SP:P32322, PID:189498, GB:M77836, SP:P32322, and PID:189498; identified by sequence similarity; pyocin R2_PP, transcriptional activator prtN complement(3418091..3418408) Pseudomonas putida KT2440 1043173 NP_745176.1 CDS PP_3032 NC_002947.3 3418567 3418857 R DNA-binding protein Roi-like protein complement(3418567..3418857) Pseudomonas putida KT2440 1043332 NP_745177.1 CDS PP_3033 NC_002947.3 3419450 3420181 R See PMID: 11069649; PRF04-like; similar to GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; transcriptional repressor pyocin R2_PP complement(3419450..3420181) Pseudomonas putida KT2440 1043214 NP_745178.1 CDS PP_3034 NC_002947.3 3420260 3420523 D regulatory protein 3420260..3420523 Pseudomonas putida KT2440 1043195 NP_745179.1 CDS PP_3035 NC_002947.3 3420434 3420607 R hypothetical protein complement(3420434..3420607) Pseudomonas putida KT2440 1043367 NP_745180.1 CDS PP_3036 NC_002947.3 3420970 3421149 D hypothetical protein 3420970..3421149 Pseudomonas putida KT2440 1043368 NP_745181.1 CDS PP_3037 NC_002947.3 3421632 3421850 D identified by match to PFAM protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 3421632..3421850 Pseudomonas putida KT2440 1043370 NP_745182.1 CDS PP_3038 NC_002947.3 3421840 3424050 D See PMID: 11069649; PRF06-like; TraC domain-containing protein 3421840..3424050 Pseudomonas putida KT2440 1043338 NP_745183.1 CDS PP_3039 NC_002947.3 3424047 3424409 D See PMID: 11069649; PRF07; similar to GP:5725184; identified by sequence similarity; hypothetical protein 3424047..3424409 Pseudomonas putida KT2440 1043382 NP_745184.1 CDS PP_3040 NC_002947.3 3424921 3425268 D See PMID: 11069649; PRF09; similar to GP:9946488, GP:5725153, and GP:5725153; identified by sequence similarity; pyocin R2_PP, holin 3424921..3425268 Pseudomonas putida KT2440 1043235 NP_745185.1 CDS PP_3041 NC_002947.3 3425433 3426044 D hypothetical protein 3425433..3426044 Pseudomonas putida KT2440 1043329 NP_745186.1 CDS PP_3042 NC_002947.3 3426049 3428085 D similar to GP:6723244; identified by sequence similarity; terminase large subunit 3426049..3428085 Pseudomonas putida KT2440 1043380 NP_745187.1 CDS PP_3043 NC_002947.3 3428087 3428293 D hypothetical protein 3428087..3428293 Pseudomonas putida KT2440 1043371 NP_745188.1 CDS PP_3044 NC_002947.3 3428290 3429783 D similar to GP:6723246; identified by sequence similarity; lambda family phage portal protein 3428290..3429783 Pseudomonas putida KT2440 1043375 NP_745189.1 CDS PP_3045 NC_002947.3 3429780 3430943 D identified by match to PFAM protein family HMM PF00574; ClpP protease 3429780..3430943 Pseudomonas putida KT2440 1043383 NP_745190.1 CDS PP_3046 NC_002947.3 3430946 3431293 D similar to GP:311850; identified by sequence similarity; hypothetical protein 3430946..3431293 Pseudomonas putida KT2440 1043369 NP_745191.1 CDS PP_3047 NC_002947.3 3431355 3432350 D similar to GP:6723249, GP:6723249, and GP:6723249; identified by sequence similarity; hypothetical protein 3431355..3432350 Pseudomonas putida KT2440 1043358 NP_745192.1 CDS PP_3048 NC_002947.3 3432347 3432667 D hypothetical protein 3432347..3432667 Pseudomonas putida KT2440 1043366 NP_745193.1 CDS PP_3049 NC_002947.3 3432664 3433326 D similar to GP:6723251; identified by sequence similarity; hypothetical protein 3432664..3433326 Pseudomonas putida KT2440 1043393 NP_745194.1 CDS PP_3050 NC_002947.3 3433319 3433849 D See PMID: 11069649; PRF10; identified by Glimmer2; hypothetical protein 3433319..3433849 Pseudomonas putida KT2440 1043388 NP_745195.1 CDS gpV NC_002947.3 3433846 3434448 D See PMID: 11069649; PRF11; identified by match to TIGR protein family HMM TIGR01644; pyocin R2_PP 3433846..3434448 Pseudomonas putida KT2440 1043395 NP_745196.1 CDS PP_3052 NC_002947.3 3434491 3434760 D hypothetical protein 3434491..3434760 Pseudomonas putida KT2440 1043396 NP_745197.1 CDS gpW NC_002947.3 3434763 3435089 D See PMID: 11069649; PRF12; pyocin R2_PP, baseplate protein 3434763..3435089 Pseudomonas putida KT2440 1043378 NP_745198.1 CDS gpJ NC_002947.3 3435086 3436066 D See PMID: 11069649; PRF13; similar to GP:5725158; identified by sequence similarity; pyocin R2_PP, baseplate/tail fiber protein 3435086..3436066 Pseudomonas putida KT2440 1043463 NP_745199.1 CDS gpI NC_002947.3 3436063 3436875 D See PMID: 11069649; PRF14; identified by match to TIGR protein family HMM TIGR01634; pyocin R2_PP, tail formation protein 3436063..3436875 Pseudomonas putida KT2440 1043377 NP_745200.1 CDS PP_3056 NC_002947.3 3436872 3437750 D See PMID: 11069649; PRF15; similar to GB:X62539, PID:40033, SP:P02984, SP:P13477, GB:J01574, GB:X15856, GB:M31808, GB:X01162, GB:X02397, PID:144391, PID:144400, PID:41134, and PID:1333745; identified by sequence similarity; pyocin R2_PP, tail fiber protein 3436872..3437750 Pseudomonas putida KT2440 1043391 NP_745201.1 CDS PP_3057 NC_002947.3 3437757 3438497 D hypothetical protein 3437757..3438497 Pseudomonas putida KT2440 1043430 NP_745202.1 CDS PP_3058 NC_002947.3 3438520 3438981 D hypothetical protein 3438520..3438981 Pseudomonas putida KT2440 1043465 NP_745203.1 CDS gpFI NC_002947.3 3439076 3440242 D See PMID: 11069649; PRF17; similar to GP:514392; identified by sequence similarity; pyocin R2_PP, tail sheath protein 3439076..3440242 Pseudomonas putida KT2440 1043394 NP_745204.1 CDS gpFII NC_002947.3 3440255 3440764 D See PMID: 11069649; PRF18; similar to PIR:JC5192, SP:P07129, GB:X05793, and PID:580822; identified by sequence similarity; pyocin R2_PP, tail tube protein 3440255..3440764 Pseudomonas putida KT2440 1043381 NP_745205.1 CDS PP_3061 NC_002947.3 3440810 3441106 D See PMID: 11069649; PRF19; identified by Glimmer2; hypothetical protein 3440810..3441106 Pseudomonas putida KT2440 1043390 NP_745206.1 CDS PP_3062 NC_002947.3 3441239 3444508 D See PMID: 11069649; PRF20; pyocin R2_PP, tail length determination protein 3441239..3444508 Pseudomonas putida KT2440 1043420 NP_745207.1 CDS gpU NC_002947.3 3444518 3445363 D See PMID: 11069649; PRF21; pyocin R2_PP, tail formation protein 3444518..3445363 Pseudomonas putida KT2440 1043597 NP_745208.1 CDS gpX NC_002947.3 3445338 3445544 D See PMID: 11069649; PRF22; pyocin R2_PP, tail component protein 3445338..3445544 Pseudomonas putida KT2440 1043645 NP_745209.1 CDS gpD NC_002947.3 3445604 3446647 D See PMID: 11069649; PRF23; similar to GP:5725169; identified by sequence similarity; pyocin R2_PP, tail formation 3445604..3446647 Pseudomonas putida KT2440 1043649 NP_745210.1 CDS PP_3066 NC_002947.3 3446684 3447235 D See PMID: 11069649; PRF24; identified by match to PFAM protein family HMM PF00182; pyocin R2_PP, lytic enzyme 3446684..3447235 Pseudomonas putida KT2440 1043584 NP_745211.1 CDS PP_3067 NC_002947.3 3448800 3450077 D identified by match to PFAM protein family HMM PF01850; hypothetical protein 3448800..3450077 Pseudomonas putida KT2440 1043419 NP_745212.1 CDS PP_3068 NC_002947.3 3450778 3450969 D hypothetical protein 3450778..3450969 Pseudomonas putida KT2440 1043402 NP_745213.1 CDS PP_3069 NC_002947.3 3450966 3453443 R similar to GP:5107805; identified by sequence similarity; outer membrane autotransporter complement(3450966..3453443) Pseudomonas putida KT2440 1043783 NP_745214.1 CDS ppiC-1 NC_002947.3 3453556 3453831 R similar to SP:P39159; identified by sequence similarity; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3453556..3453831) Pseudomonas putida KT2440 1043788 NP_745215.1 CDS PP_3071 NC_002947.3 3453935 3455887 R AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase complement(3453935..3455887) Pseudomonas putida KT2440 1043586 NP_745216.1 CDS PP_3072 NC_002947.3 3455980 3456459 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(3455980..3456459) Pseudomonas putida KT2440 1043453 NP_745217.1 CDS bdhA NC_002947.3 3456515 3457285 R catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase complement(3456515..3457285) Pseudomonas putida KT2440 1043762 NP_745218.1 CDS PP_3074 NC_002947.3 3457296 3458687 R similar to GP:9948006; identified by sequence similarity; citrate transporter complement(3457296..3458687) Pseudomonas putida KT2440 1043479 NP_745219.1 CDS PP_3075 NC_002947.3 3458913 3460358 R identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator complement(3458913..3460358) Pseudomonas putida KT2440 1043815 NP_745220.1 CDS PP_3076 NC_002947.3 3460355 3461371 R identified by match to PFAM protein family HMM PF03605; binding-protein-dependent transport system inner membrane protein complement(3460355..3461371) Pseudomonas putida KT2440 1043817 NP_745221.1 CDS PP_3077 NC_002947.3 3461371 3462429 R identified by match to PFAM protein family HMM PF00528; binding-protein-dependent transport system inner membrane protein complement(3461371..3462429) Pseudomonas putida KT2440 1043775 NP_745222.1 CDS PP_3078 NC_002947.3 3462426 3464354 R identified by match to PFAM protein family HMM PF00496; ABC transporter substrate-binding protein complement(3462426..3464354) Pseudomonas putida KT2440 1043637 NP_745223.1 CDS ppiC-2 NC_002947.3 3464368 3464649 R similar to SP:P39159; identified by sequence similarity; peptidyl-prolyl cis-trans isomerase complement(3464368..3464649) Pseudomonas putida KT2440 1043804 NP_745224.1 CDS aroF-2 NC_002947.3 3464730 3465791 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3464730..3465791) Pseudomonas putida KT2440 1043781 NP_745225.1 CDS PP_3081 NC_002947.3 3466346 3466822 R similar to SP:P33990, GB:X73561, GB:X80766, PID:405608, PID:677871, SP:P33990, GB:X73561, GB:X80766, PID:405608, and PID:677871; identified by sequence similarity; PEBP family protein complement(3466346..3466822) Pseudomonas putida KT2440 1043587 NP_745226.1 CDS PP_3082 NC_002947.3 3467336 3468700 R similar to GP:9951161; identified by sequence similarity; major facilitator superfamily protein complement(3467336..3468700) Pseudomonas putida KT2440 1043809 NP_745227.1 CDS PP_3083 NC_002947.3 3469061 3469936 D similar to GP:9947711, and GP:9947711; identified by sequence similarity; auxin efflux carrier 3469061..3469936 Pseudomonas putida KT2440 1043852 NP_745228.1 CDS PP_3084 NC_002947.3 3470069 3472528 R identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor complement(3470069..3472528) Pseudomonas putida KT2440 1043808 NP_745229.1 CDS PP_3085 NC_002947.3 3472636 3473601 R transmembrane sensor complement(3472636..3473601) Pseudomonas putida KT2440 1043782 NP_745230.1 CDS PP_3086 NC_002947.3 3473598 3474104 R identified by match to PFAM protein family HMM PF00776; RNA polymerase sigma-70 factor complement(3473598..3474104) Pseudomonas putida KT2440 1043876 NP_745231.1 CDS PP_3087 NC_002947.3 3474193 3476709 R identified by match to PFAM protein family HMM PF03584; excinuclease ABC subunit A complement(3474193..3476709) Pseudomonas putida KT2440 1043814 NP_745232.1 CDS PP_3088 NC_002947.3 3476877 3477962 R similar to GP:9945907; identified by sequence similarity; hypothetical protein complement(3476877..3477962) Pseudomonas putida KT2440 1043811 NP_745233.1 CDS PP_3089 NC_002947.3 3478058 3478600 R hypothetical protein complement(3478058..3478600) Pseudomonas putida KT2440 1043778 NP_745234.1 CDS PP_3090 NC_002947.3 3478720 3481215 R identified by match to PFAM protein family HMM PF00691; OmpA domain-containing protein complement(3478720..3481215) Pseudomonas putida KT2440 1043850 NP_745235.1 CDS PP_3091 NC_002947.3 3482117 3485920 R hypothetical protein complement(3482117..3485920) Pseudomonas putida KT2440 1043910 NP_745236.1 CDS PP_3092 NC_002947.3 3485951 3486667 R hypothetical protein complement(3485951..3486667) Pseudomonas putida KT2440 1043941 NP_745237.1 CDS PP_3093 NC_002947.3 3486664 3488007 R hypothetical protein complement(3486664..3488007) Pseudomonas putida KT2440 1043929 NP_745238.1 CDS PP_3094 NC_002947.3 3488004 3488726 R hypothetical protein complement(3488004..3488726) Pseudomonas putida KT2440 1043871 NP_745239.1 CDS PP_3095 NC_002947.3 3488751 3491387 R identified by match to PFAM protein family HMM PF02861; chaperone-associated ATPase complement(3488751..3491387) Pseudomonas putida KT2440 1043846 NP_745240.1 CDS PP_3096 NC_002947.3 3491345 3492415 R hypothetical protein complement(3491345..3492415) Pseudomonas putida KT2440 1043836 NP_745241.1 CDS PP_3097 NC_002947.3 3492379 3494199 R hypothetical protein complement(3492379..3494199) Pseudomonas putida KT2440 1043944 NP_745242.1 CDS PP_3098 NC_002947.3 3494199 3494681 R similar to GP:2708664, and GP:9945912; identified by sequence similarity; hypothetical protein complement(3494199..3494681) Pseudomonas putida KT2440 1043946 NP_745243.1 CDS PP_3099 NC_002947.3 3494708 3496210 R similar to GP:2708666, and GP:9948404; identified by sequence similarity; hypothetical protein complement(3494708..3496210) Pseudomonas putida KT2440 1043952 NP_745244.1 CDS PP_3100 NC_002947.3 3496225 3496800 R similar to GP:2708667, and GP:9948403; identified by sequence similarity; hypothetical protein complement(3496225..3496800) Pseudomonas putida KT2440 1043948 NP_745245.1 CDS PP_3101 NC_002947.3 3498998 3499780 D identified by match to PFAM protein family HMM PF03747; ADP-ribosylglycohydrolase 3498998..3499780 Pseudomonas putida KT2440 1043932 NP_745246.1 CDS PP_3102 NC_002947.3 3504272 3504568 R hypothetical protein complement(3504272..3504568) Pseudomonas putida KT2440 1043962 NP_745247.1 CDS PP_3103 NC_002947.3 3504565 3505740 R hypothetical protein complement(3504565..3505740) Pseudomonas putida KT2440 1043877 NP_745248.1 CDS PP_3104 NC_002947.3 3506632 3507648 D hypothetical protein 3506632..3507648 Pseudomonas putida KT2440 1043918 NP_745249.1 CDS PP_3105 NC_002947.3 3507649 3508344 D hypothetical protein 3507649..3508344 Pseudomonas putida KT2440 1043956 NP_745250.1 CDS PP_3106 NC_002947.3 3508370 3510226 D similar to GP:9945921; identified by sequence similarity; hypothetical protein 3508370..3510226 Pseudomonas putida KT2440 1043953 NP_745251.1 CDS PP_3107 NC_002947.3 3510802 3511323 D similar to GP:9945920; identified by sequence similarity; hypothetical protein 3510802..3511323 Pseudomonas putida KT2440 1043957 NP_745252.1 CDS PP_3108 NC_002947.3 3511330 3515487 D similar to GP:15130940; identified by sequence similarity; rhs-like protein 3511330..3515487 Pseudomonas putida KT2440 1043950 NP_745253.1 CDS PP_3109 NC_002947.3 3517881 3518312 D hypothetical protein 3517881..3518312 Pseudomonas putida KT2440 1043955 NP_745254.1 CDS PP_3110 NC_002947.3 3521804 3522016 D hypothetical protein 3521804..3522016 Pseudomonas putida KT2440 1043959 NP_745255.1 CDS PP_3111 NC_002947.3 3522156 3522260 D hypothetical protein 3522156..3522260 Pseudomonas putida KT2440 1043940 NP_745256.1 CDS PP_3112 NC_002947.3 3522417 3522845 R similar to GP:3785998; identified by sequence similarity; hypothetical protein complement(3522417..3522845) Pseudomonas putida KT2440 1043942 NP_745257.1 CDS PP_3113 NC_002947.3 3522907 3523266 D similar to GP:5824138, and GP:8037784; identified by sequence similarity; ISPpu13, transposase Orf1 3522907..3523266 Pseudomonas putida KT2440 1043963 NP_745258.1 CDS PP_3114 NC_002947.3 3523285 3524817 D similar to GP:5824139, and GP:8037785; identified by sequence similarity; ISPpu13, transposase Orf2 3523285..3524817 Pseudomonas putida KT2440 1043961 NP_745259.1 CDS PP_3115 NC_002947.3 3524832 3525146 D similar to SP:P12059, and GB:X52093; identified by sequence similarity; ISPpu13, transposase Orf3 3524832..3525146 Pseudomonas putida KT2440 1043965 NP_745260.1 CDS lexA-2 NC_002947.3 3525552 3526160 D Represses a number of genes involved in the response to DNA damage; LexA repressor 3525552..3526160 Pseudomonas putida KT2440 1043964 NP_745261.1 CDS PP_3117 NC_002947.3 3526160 3526780 D similar to GB:X07876, SP:P09544, PID:2337863, and PID:33971; identified by sequence similarity; hypothetical protein 3526160..3526780 Pseudomonas putida KT2440 1043985 NP_745262.1 CDS PP_3118 NC_002947.3 3526787 3528205 D similar to GP:9946549, and GP:9946549; identified by sequence similarity; hypothetical protein 3526787..3528205 Pseudomonas putida KT2440 1043971 NP_745263.2 CDS dnaE2 NC_002947.3 3528202 3531282 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 3528202..3531282 Pseudomonas putida KT2440 1043951 NP_745264.1 CDS PP_3120 NC_002947.3 3531465 3532226 R identified by match to PFAM protein family HMM PF00248; aldo/keto reductase complement(3531465..3532226) Pseudomonas putida KT2440 1043969 NP_745265.1 CDS PP_3121 NC_002947.3 3532274 3533179 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(3532274..3533179) Pseudomonas putida KT2440 1046770 NP_745266.1 CDS PP_3122 NC_002947.3 3533320 3534018 D similar to SP:Q01103; identified by sequence similarity; 3-oxoacid CoA-transferase subunit A 3533320..3534018 Pseudomonas putida KT2440 1046775 NP_745267.1 CDS PP_3123 NC_002947.3 3534054 3534710 D identified by match to PFAM protein family HMM PF01144; 3-oxoacid CoA-transferase subunit B 3534054..3534710 Pseudomonas putida KT2440 1046771 NP_745268.1 CDS PP_3124 NC_002947.3 3534865 3536283 D similar to SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; short-chain fatty acid transporter family protein 3534865..3536283 Pseudomonas putida KT2440 1046772 NP_745269.1 CDS PP_3125 NC_002947.3 3536360 3536902 D identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 3536360..3536902 Pseudomonas putida KT2440 1046773 NP_745270.1 CDS PP_3126 NC_002947.3 3537594 3538151 D similar to GP:10946230; identified by sequence similarity; polysaccharide export protein 3537594..3538151 Pseudomonas putida KT2440 1046778 NP_745271.1 CDS PP_3127 NC_002947.3 3539311 3540849 D similar to GB:X78084, PID:459545, and SP:Q59835; identified by sequence similarity; lipopolysaccharide biosynthesis protein 3539311..3540849 Pseudomonas putida KT2440 1046774 NP_745272.1 CDS PP_3128 NC_002947.3 3540885 3541691 D identified by match to TIGR protein family HMM TIGR01007; protein-tyrosine kinase 3540885..3541691 Pseudomonas putida KT2440 1046776 NP_745273.1 CDS galE NC_002947.3 3541754 3542719 R identified by match to TIGR protein family HMM TIGR01746; UDP-glucose 4-epimerase complement(3541754..3542719) Pseudomonas putida KT2440 1046777 NP_745274.1 CDS PP_3130 NC_002947.3 3542825 3545431 R identified by match to PFAM protein family HMM PF01233; hypothetical protein complement(3542825..3545431) Pseudomonas putida KT2440 1046792 NP_745275.1 CDS PP_3131 NC_002947.3 3545431 3546957 R identified by match to PFAM protein family HMM PF03594; hypothetical protein complement(3545431..3546957) Pseudomonas putida KT2440 1046782 NP_745276.1 CDS PP_3132 NC_002947.3 3547053 3548429 D identified by match to PFAM protein family HMM PF04290; polysaccharide biosynthesis protein 3547053..3548429 Pseudomonas putida KT2440 1046779 NP_745277.1 CDS PP_3133 NC_002947.3 3548666 3550132 D identified by match to PFAM protein family HMM PF00732; GMC oxidoreductase 3548666..3550132 Pseudomonas putida KT2440 1046780 NP_745278.1 CDS PP_3134 NC_002947.3 3550149 3550844 D identified by match to PFAM protein family HMM PF00132; transferase hexapeptide repeat containing protein 3550149..3550844 Pseudomonas putida KT2440 1046781 NP_745279.1 CDS PP_3135 NC_002947.3 3550846 3551802 D similar to GP:6688581; identified by sequence similarity; glycosyl transferase family protein 3550846..3551802 Pseudomonas putida KT2440 1046790 NP_745280.1 CDS PP_3136 NC_002947.3 3551811 3552335 D similar to GB:M19399, SP:P11278, PID:155483, SP:P18353, PID:398536, and PID:1181551; identified by sequence similarity; serine O-acetyltransferase 3551811..3552335 Pseudomonas putida KT2440 1046783 NP_745281.1 CDS PP_3137 NC_002947.3 3552341 3553318 D identified by match to PFAM protein family HMM PF00535; glycosyl transferase family protein 3552341..3553318 Pseudomonas putida KT2440 1046784 NP_745282.1 CDS PP_3138 NC_002947.3 3553331 3554332 D similar to GP:2961072, and GP:2961072; identified by sequence similarity; VirK domain-containing protein 3553331..3554332 Pseudomonas putida KT2440 1046785 NP_745283.1 CDS PP_3139 NC_002947.3 3554382 3555584 D similar to GB:L15409, GB:X96489, GB:U54612, SP:P40337, PID:1235543, PID:1293147, and PID:2282064; identified by sequence similarity; glycoside hydrolase family protein 3554382..3555584 Pseudomonas putida KT2440 1046786 NP_745284.1 CDS PP_3140 NC_002947.3 3555581 3556768 D identified by match to PFAM protein family HMM PF00535; glycosyl transferase family protein 3555581..3556768 Pseudomonas putida KT2440 1046799 NP_745285.1 CDS PP_3141 NC_002947.3 3556768 3557520 D similar to GB:M33562, SP:P19911, SP:P19912, PID:141906, PID:901867, GB:M83667, SP:P49716, and PID:189176; identified by sequence similarity; WecB/TagA/CpsF family glycosyl transferase 3556768..3557520 Pseudomonas putida KT2440 1046787 NP_745286.1 CDS PP_3142 NC_002947.3 3557699 3559120 D identified by match to PFAM protein family HMM PF02397; sugar transferase 3557699..3559120 Pseudomonas putida KT2440 1046788 NP_745287.1 CDS PP_3143 NC_002947.3 3559155 3560096 R similar to GB:L17326, PID:306325, GB:L17326, and PID:306325; identified by sequence similarity; LysR family transcriptional regulator complement(3559155..3560096) Pseudomonas putida KT2440 1046789 NP_745288.1 CDS sda-3 NC_002947.3 3560243 3561619 D similar to SP:P42630; identified by sequence similarity; iron-sulfur-dependent L-serine dehydratase 3560243..3561619 Pseudomonas putida KT2440 1046791 NP_745289.1 CDS PP_3145 NC_002947.3 3561707 3562528 R similar to SP:P05788, PID:40343, SP:P05788, and PID:40343; identified by sequence similarity; hypothetical protein complement(3561707..3562528) Pseudomonas putida KT2440 1046795 NP_745290.1 CDS PP_3146 NC_002947.3 3562525 3563820 R similar to GB:X65867, GB:S60710, SP:P30566, PID:28904, and PID:28905; identified by sequence similarity; oxidoreductase complement(3562525..3563820) Pseudomonas putida KT2440 1046793 NP_745291.1 CDS PP_3147 NC_002947.3 3563834 3564922 R identified by match to PFAM protein family HMM PF02214; polyamine ABC transporter substrate-binding protein complement(3563834..3564922) Pseudomonas putida KT2440 1046794 NP_745292.1 CDS PP_3148 NC_002947.3 3565003 3566361 R similar to GB:L23248, and PID:495933; identified by sequence similarity; glutamine synthetase complement(3565003..3566361) Pseudomonas putida KT2440 1046798 NP_745293.1 CDS PP_3149 NC_002947.3 3566395 3567444 D similar to SP:Q9ZFU7; identified by sequence similarity; AraC family transcriptional regulator 3566395..3567444 Pseudomonas putida KT2440 1046796 NP_745294.1 CDS PP_3150 NC_002947.3 3567441 3569438 D identified by match to PFAM protein family HMM PF00580; hypothetical protein 3567441..3569438 Pseudomonas putida KT2440 1046797 NP_745295.1 CDS PP_3151 NC_002947.3 3569476 3570861 R similar to SP:P37828, and PID:901847; identified by sequence similarity; aldehyde dehydrogenase complement(3569476..3570861) Pseudomonas putida KT2440 1046801 NP_745296.1 CDS PP_3152 NC_002947.3 3570969 3571835 D similar to GP:11127717, SP:P19213, PID:2160260, and PID:2160261; identified by sequence similarity; LysR family transcriptional regulator 3570969..3571835 Pseudomonas putida KT2440 1046817 NP_745297.1 CDS PP_3153 NC_002947.3 3571962 3572405 D hypothetical protein 3571962..3572405 Pseudomonas putida KT2440 1046800 NP_745298.1 CDS PP_3154 NC_002947.3 3572512 3573180 D hypothetical protein 3572512..3573180 Pseudomonas putida KT2440 1046802 NP_745299.1 CDS PP_3155 NC_002947.3 3573212 3575341 R identified by match to PFAM protein family HMM PF00593; outer membrane ferric siderophore receptor complement(3573212..3575341) Pseudomonas putida KT2440 1046803 NP_745300.1 CDS PP_3156 NC_002947.3 3575596 3576486 R similar to SP:P03807; identified by sequence similarity; universal stress protein complement(3575596..3576486) Pseudomonas putida KT2440 1046805 NP_745301.1 CDS PP_3157 NC_002947.3 3576612 3577403 D similar to GP:10567379; identified by sequence similarity; inositol monophosphatase 3576612..3577403 Pseudomonas putida KT2440 1046804 NP_745302.1 CDS PP_3158 NC_002947.3 3577583 3578320 D hypothetical protein 3577583..3578320 Pseudomonas putida KT2440 1046806 NP_745303.1 CDS benR NC_002947.3 3579863 3580819 D similar to GP:7542435, and GP:7542435; identified by sequence similarity; AraC family transcriptional regulator 3579863..3580819 Pseudomonas putida KT2440 1046810 NP_745304.1 CDS PP_3160 NC_002947.3 3580902 3581843 D hypothetical protein 3580902..3581843 Pseudomonas putida KT2440 1046809 NP_745305.1 CDS benA NC_002947.3 3581927 3583285 D similar to GP:7542436, and GP:7542436; identified by sequence similarity; benzoate dioxygenase subunit alpha 3581927..3583285 Pseudomonas putida KT2440 1046807 NP_745306.1 CDS benB NC_002947.3 3583282 3583767 D similar to GP:7542437, and GP:7542437; identified by sequence similarity; benzoate dioxygenase subunit beta 3583282..3583767 Pseudomonas putida KT2440 1046845 NP_745307.1 CDS benC NC_002947.3 3583840 3584850 D with BenAB catalyzes the formation of 2-hydro-1,2-dihydroxybenzoate from benzoate; oxidoreductase FAD/NAD(P)-binding domain-containing protein 3583840..3584850 Pseudomonas putida KT2440 1046808 NP_745308.1 CDS benD NC_002947.3 3584985 3585746 D catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 3584985..3585746 Pseudomonas putida KT2440 1046818 NP_745309.1 CDS benK NC_002947.3 3585804 3587132 D similar to GP:7542440, and GP:7542440; identified by sequence similarity; major facilitator superfamily transporter 3585804..3587132 Pseudomonas putida KT2440 1046811 NP_745310.1 CDS PP_3166 NC_002947.3 3587162 3588076 D similar to GP:1008926, and GP:1008926; identified by sequence similarity; catechol 1,2-dioxygenase 3587162..3588076 Pseudomonas putida KT2440 1046812 NP_745311.1 CDS benE-2 NC_002947.3 3588151 3589422 D similar to GP:7542441, and GP:7542441; identified by sequence similarity; benzoate transporter 3588151..3589422 Pseudomonas putida KT2440 1046813 NP_745312.1 CDS benF NC_002947.3 3589477 3590727 D similar to GP:7542442, and GP:7542442; identified by sequence similarity; benzoate-specific porin 3589477..3590727 Pseudomonas putida KT2440 1046814 NP_745313.1 CDS PP_3169 NC_002947.3 3590802 3591881 D similar to GP:7542443; identified by sequence similarity; membrane-bound metal-dependent hydrolase 3590802..3591881 Pseudomonas putida KT2440 1046815 NP_745314.1 CDS PP_3170 NC_002947.3 3591950 3592861 D similar to GP:3169721; identified by sequence similarity; LysR family transcriptional regulator 3591950..3592861 Pseudomonas putida KT2440 1046816 NP_745315.1 CDS PP_3171 NC_002947.3 3592962 3593942 D similar to GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; luciferase 3592962..3593942 Pseudomonas putida KT2440 1046820 NP_745316.1 CDS PP_3172 NC_002947.3 3594018 3595439 R similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase complement(3594018..3595439) Pseudomonas putida KT2440 1046819 NP_745317.1 CDS nemA NC_002947.3 3595905 3597002 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(3595905..3597002) Pseudomonas putida KT2440 1046823 NP_745318.1 CDS PP_3174 NC_002947.3 3597098 3598108 R similar to GB:U09564, and PID:507213; identified by sequence similarity; aldo/keto reductase complement(3597098..3598108) Pseudomonas putida KT2440 1046821 NP_745319.1 CDS PP_3175 NC_002947.3 3598181 3599701 R similar to GB:L19299, SP:P41131, PID:304015, GB:X59066, GB:X65460, GB:D28126, GB:D14710, SP:P25705, PID:28938, PID:34468, PID:559317, and PID:559325; identified by sequence similarity; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3598181..3599701) Pseudomonas putida KT2440 1046822 NP_745320.1 CDS PP_3176 NC_002947.3 3599867 3601189 R identified by match to TIGR protein family HMM TIGR00880; major facilitator family transporter complement(3599867..3601189) Pseudomonas putida KT2440 1046824 NP_745321.1 CDS PP_3177 NC_002947.3 3601281 3602450 D identified by match to PFAM protein family HMM PF02954; CdaR family transcriptional regulator 3601281..3602450 Pseudomonas putida KT2440 1046827 NP_745322.1 CDS PP_3178 NC_002947.3 3602592 3603731 D identified by match to TIGR protein family HMM TIGR00045; glycerate kinase 3602592..3603731 Pseudomonas putida KT2440 1046826 NP_745323.1 CDS PP_3179 NC_002947.3 3603751 3604650 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(3603751..3604650) Pseudomonas putida KT2440 1046825 NP_745324.1 CDS PP_3180 NC_002947.3 3604778 3605818 D similar to GB:X63575, PID:2193884, GB:X63575, and PID:2193884; identified by sequence similarity; SMP-30/gluconolaconase/LRE domain-containing protein 3604778..3605818 Pseudomonas putida KT2440 1046828 NP_745325.1 CDS PP_3181 NC_002947.3 3605808 3606758 R similar to GP:5524530; identified by sequence similarity; phage integrase site specific recombinase complement(3605808..3606758) Pseudomonas putida KT2440 1046829 NP_745326.1 CDS PP_3182 NC_002947.3 3606849 3609113 R similar to GP:6759486; identified by sequence similarity; diguanylate cyclase complement(3606849..3609113) Pseudomonas putida KT2440 1046830 NP_745327.1 CDS PP_3183 NC_002947.3 3609246 3610229 R identified by match to PFAM protein family HMM PF02630; electron transport protein SCO1/SenC complement(3609246..3610229) Pseudomonas putida KT2440 1046831 NP_745328.1 CDS PP_3184 NC_002947.3 3610285 3613680 R hypothetical protein complement(3610285..3613680) Pseudomonas putida KT2440 1046833 NP_745329.1 CDS pet18 NC_002947.3 3614125 3614772 D similar to GB:X04654, GB:X04654, GB:X06817, GB:X07402, GB:M57928, GB:M57929, GB:M57930, GB:M57931, GB:M57932, GB:M57933, GB:M57934, GB:M57935, GB:M57936, GB:M57937, GB:M57939, GB:X06811, GB:X06812, GB:X06813, GB:X06814, GB:X06815, GB:X06816, GB:X06818, GB:X07403, GB:X84841, GB:X06819, SP:P08621, PID:337445, PID:602021, PID:602023, PID:602025, PID:602027, PID:602344, PID:683580, PID:825725, PID:825726, PID:825727, and SP:P13061; identified by sequence similarity; TenA family transcriptional activator 3614125..3614772 Pseudomonas putida KT2440 1046835 NP_745330.1 CDS PP_3186 NC_002947.3 3614775 3615434 D similar to GB:X04654, GB:X04654, GB:X06817, GB:X07402, GB:M57928, GB:M57929, GB:M57930, GB:M57931, GB:M57932, GB:M57933, GB:M57934, GB:M57935, GB:M57936, GB:M57937, GB:M57939, GB:X06811, GB:X06812, GB:X06813, GB:X06814, GB:X06815, GB:X06816, GB:X06818, GB:X07403, GB:X84841, GB:X06819, SP:P08621, PID:337445, PID:602021, PID:602023, PID:602025, PID:602027, PID:602344, PID:683580, PID:825725, PID:825726, PID:825727, GB:X04654, GB:X04654, GB:X06817, GB:X07402, GB:M57928, GB:M57929, GB:M57930, GB:M57931, GB:M57932, GB:M57933, GB:M57934, GB:M57935, GB:M57936, GB:M57937, GB:M57939, GB:X06811, GB:X06812, GB:X06813, GB:X06814, GB:X06815, GB:X06816, GB:X06818, GB:X07403, GB:X84841, GB:X06819, SP:P08621, PID:337445, PID:602021, PID:602023, PID:602025, PID:602027, PID:602344, PID:683580, PID:825725, PID:825726, and PID:825727; identified by sequence similarity; TenA family transcriptional activator 3614775..3615434 Pseudomonas putida KT2440 1046832 NP_745331.1 CDS codB NC_002947.3 3615663 3616928 D identified by match to PFAM protein family HMM PF03591; cytosine permease 3615663..3616928 Pseudomonas putida KT2440 1046834 NP_745332.1 CDS PP_3188 NC_002947.3 3616973 3618142 D similar to GP:7619788; identified by sequence similarity; hypothetical protein 3616973..3618142 Pseudomonas putida KT2440 1046837 NP_745333.1 CDS codA NC_002947.3 3618147 3619388 D similar to SP:P25524; identified by sequence similarity; N-isopropylammelide isopropylaminohydrolase 3618147..3619388 Pseudomonas putida KT2440 1046836 NP_745334.1 CDS PP_3190 NC_002947.3 3619402 3620349 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(3619402..3620349) Pseudomonas putida KT2440 1046839 NP_745335.1 CDS PP_3191 NC_002947.3 3620346 3621398 R similar to GB:Z29635, SP:P46374, and PID:455002; identified by sequence similarity; hypothetical protein complement(3620346..3621398) Pseudomonas putida KT2440 1046838 NP_745336.1 CDS PP_3192 NC_002947.3 3621429 3622034 R identified by match to PFAM protein family HMM PF02796; hypothetical protein complement(3621429..3622034) Pseudomonas putida KT2440 1046840 NP_745337.1 CDS PP_3193 NC_002947.3 3622260 3622718 R identified by match to PFAM protein family HMM PF03928; hypothetical protein complement(3622260..3622718) Pseudomonas putida KT2440 1046841 NP_745338.1 CDS PP_3194 NC_002947.3 3622706 3624049 R similar to GP:10175557; identified by sequence similarity; hypothetical protein complement(3622706..3624049) Pseudomonas putida KT2440 1046842 NP_745339.1 CDS PP_3195 NC_002947.3 3624222 3625484 R similar to GB:D16469, GB:X87195, PID:495097, GB:D16469, GB:X87195, and PID:495097; identified by sequence similarity; hypothetical protein complement(3624222..3625484) Pseudomonas putida KT2440 1046843 NP_745340.1 CDS PP_3196 NC_002947.3 3625561 3626499 R similar to GB:X79440, SP:Q16798, and PID:535012; identified by sequence similarity; nodulation protein d1 complement(3625561..3626499) Pseudomonas putida KT2440 1046846 NP_745341.1 CDS PP_3197 NC_002947.3 3626776 3627717 D similar to GB:X54232, SP:P35052, and PID:31847; identified by sequence similarity; glyoxalase 3626776..3627717 Pseudomonas putida KT2440 1046853 NP_745342.1 CDS PP_3198 NC_002947.3 3627730 3628068 D identified by match to PFAM protein family HMM PF00355; (2Fe-2S) ferredoxin 3627730..3628068 Pseudomonas putida KT2440 1046844 NP_745343.1 CDS PP_3199 NC_002947.3 3628208 3629332 D similar to SP:P23262; identified by sequence similarity; hypothetical protein 3628208..3629332 Pseudomonas putida KT2440 1046850 NP_745344.1 CDS PP_3200 NC_002947.3 3629377 3631089 D similar to GP:3184126, and GP:3184126; identified by sequence similarity; hypothetical protein 3629377..3631089 Pseudomonas putida KT2440 1046847 NP_745345.1 CDS PP_3201 NC_002947.3 3632526 3633587 D identified by match to PFAM protein family HMM PF02012; BNR repeat-containing protein 3632526..3633587 Pseudomonas putida KT2440 1046848 NP_745346.1 CDS PP_3202 NC_002947.3 3633600 3636080 D similar to GP:9949187; identified by sequence similarity; transporter 3633600..3636080 Pseudomonas putida KT2440 1046849 NP_745347.1 CDS PP_3203 NC_002947.3 3636070 3637260 D identified by match to PFAM protein family HMM PF04171; major facilitator family transporter 3636070..3637260 Pseudomonas putida KT2440 1046852 NP_745348.1 CDS PP_3204 NC_002947.3 3637418 3638005 D hypothetical protein 3637418..3638005 Pseudomonas putida KT2440 1046855 NP_745349.1 CDS PP_3205 NC_002947.3 3638002 3638994 D identified by match to TIGR protein family HMM TIGR01266; fumarylacetoacetate hydrolase 3638002..3638994 Pseudomonas putida KT2440 1046854 NP_745350.1 CDS PP_3206 NC_002947.3 3638985 3639971 D similar to GB:M31651, GB:M27542, GB:X16351, GB:X05403, GB:X05792, GB:X16349, GB:X16350, SP:P04278, SP:P14689, PID:1335305, PID:36452, and PID:825718; identified by sequence similarity; hypothetical protein 3638985..3639971 Pseudomonas putida KT2440 1046851 NP_745351.1 CDS PP_3207 NC_002947.3 3639968 3640750 D similar to GP:6018312; identified by sequence similarity; cyclase 3639968..3640750 Pseudomonas putida KT2440 1046866 NP_745352.1 CDS PP_3208 NC_002947.3 3640830 3641774 R similar to GB:U04619, PID:439982, and PID:1399285; identified by sequence similarity; Pdr/VanB family oxidoreductase complement(3640830..3641774) Pseudomonas putida KT2440 1046856 NP_745353.1 CDS PP_3209 NC_002947.3 3641771 3643201 R similar to GB:L22971, PID:413755, and SP:P52200; identified by sequence similarity; amidohydrolase complement(3641771..3643201) Pseudomonas putida KT2440 1046857 NP_745354.1 CDS PP_3210 NC_002947.3 3643240 3644043 R similar to GB:L10328, SP:P06128, GB:K01992, GB:M24254, PID:147256, PID:290576, GB:U00096, and PID:2367271; identified by sequence similarity; ABC transporter permease complement(3643240..3644043) Pseudomonas putida KT2440 1046858 NP_745355.1 CDS PP_3211 NC_002947.3 3644054 3644902 R identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein complement(3644054..3644902) Pseudomonas putida KT2440 1046859 NP_745356.1 CDS PP_3212 NC_002947.3 3644968 3645993 R similar to GP:5669522; identified by sequence similarity; Rieske 2Fe-2S family protein complement(3644968..3645993) Pseudomonas putida KT2440 1046860 NP_745357.1 CDS PP_3213 NC_002947.3 3646032 3647060 R similar to GB:Z25795, SP:P39122, PID:397489, PID:2293137, and GB:AL009126; identified by sequence similarity; ABC transporter substrate-binding protein complement(3646032..3647060) Pseudomonas putida KT2440 1046861 NP_745358.1 CDS PP_3214 NC_002947.3 3647714 3648520 D similar to GP:13937484; identified by sequence similarity; hypothetical protein 3647714..3648520 Pseudomonas putida KT2440 1046863 NP_745359.1 CDS PP_3216 NC_002947.3 3650211 3650819 R hypothetical protein complement(3650211..3650819) Pseudomonas putida KT2440 1046862 NP_745360.1 CDS PP_3217 NC_002947.3 3651116 3652054 D identified by match to PFAM protein family HMM PF04069; aliphatic sulfonate ABC transporter substrate-binding protein 3651116..3652054 Pseudomonas putida KT2440 1046871 NP_745361.1 CDS PP_3218 NC_002947.3 3652112 3653431 D similar to SP:P37717, GB:X54676, PID:39288, SP:P37717, GB:X54676, and PID:39288; identified by sequence similarity; NtaA/SnaA/SoxA family monooxygenase 3652112..3653431 Pseudomonas putida KT2440 1046864 NP_745362.1 CDS PP_3219 NC_002947.3 3653529 3654629 R similar to SP:O85764; identified by sequence similarity; alkansulfonate monooxygenase complement(3653529..3654629) Pseudomonas putida KT2440 1046867 NP_745363.1 CDS PP_3220 NC_002947.3 3654770 3656389 R identified by match to TIGR protein family HMM TIGR01727; ABC transporter ATP-binding protein complement(3654770..3656389) Pseudomonas putida KT2440 1046868 NP_745364.1 CDS PP_3221 NC_002947.3 3656386 3657294 R similar to GP:3170568; identified by sequence similarity; ABC transporter permease complement(3656386..3657294) Pseudomonas putida KT2440 1046870 NP_745365.1 CDS PP_3222 NC_002947.3 3657296 3658246 R similar to GP:3170567; identified by sequence similarity; ABC transporter permease complement(3657296..3658246) Pseudomonas putida KT2440 1046890 NP_745366.1 CDS PP_3223 NC_002947.3 3658243 3659862 R similar to GP:3170566; identified by sequence similarity; ABC transporter substrate-binding protein complement(3658243..3659862) Pseudomonas putida KT2440 1046869 NP_745367.1 CDS PP_3224 NC_002947.3 3659937 3660731 R similar to GP:9949570; identified by sequence similarity; aldolase complement(3659937..3660731) Pseudomonas putida KT2440 1046872 NP_745368.1 CDS PP_3225 NC_002947.3 3660747 3661691 R similar to GP:10173564; identified by sequence similarity; D-isomer specific 2-hydroxyacid dehydrogenase complement(3660747..3661691) Pseudomonas putida KT2440 1046874 NP_745369.1 CDS PP_3226 NC_002947.3 3661688 3662830 R identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase complement(3661688..3662830) Pseudomonas putida KT2440 1046873 NP_745370.1 CDS PP_3227 NC_002947.3 3663016 3663906 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(3663016..3663906) Pseudomonas putida KT2440 1046876 NP_745371.1 CDS PP_3228 NC_002947.3 3664108 3665073 D identified by match to PFAM protein family HMM PF03466; aliphatic sulfonate ABC transporter substrate-binding protein 3664108..3665073 Pseudomonas putida KT2440 1046877 NP_745372.1 CDS PP_3229 NC_002947.3 3665090 3666046 D similar to SP:P75853; identified by sequence similarity; aliphatic sulfonate ABC transporter substrate-binding protein 3665090..3666046 Pseudomonas putida KT2440 1046875 NP_745373.1 CDS PP_3230 NC_002947.3 3666362 3667054 D identified by match to TIGR protein family HMM TIGR01091; phosphoribosyl transferase domain-containing protein 3666362..3667054 Pseudomonas putida KT2440 1046879 NP_745374.1 CDS PP_3231 NC_002947.3 3667316 3668683 R similar to GP:7635890, and GP:15139960; identified by sequence similarity; hypothetical protein complement(3667316..3668683) Pseudomonas putida KT2440 1046878 NP_745375.1 CDS PP_3232 NC_002947.3 3668743 3669312 R identified by match to TIGR protein family HMM TIGR01575; acetyltransferase complement(3668743..3669312) Pseudomonas putida KT2440 1046880 NP_745376.1 CDS PP_3233 NC_002947.3 3669704 3670435 D identified by match to PFAM protein family HMM PF00325; Crp/Fnr family transcriptional regulator 3669704..3670435 Pseudomonas putida KT2440 1046881 NP_745377.1 CDS PP_3234 NC_002947.3 3671193 3671888 D identified by match to PFAM protein family HMM PF00011; heat shock protein 20 3671193..3671888 Pseudomonas putida KT2440 1046882 NP_745378.1 CDS PP_3235 NC_002947.3 3671947 3672339 D similar to GB:X03349, PID:1197188, and PID:5673; identified by sequence similarity; hypothetical protein 3671947..3672339 Pseudomonas putida KT2440 1046883 NP_745379.1 CDS PP_3236 NC_002947.3 3672538 3672789 D similar to GB:U00434, and PID:392549; identified by sequence similarity; lipoprotein OprI 3672538..3672789 Pseudomonas putida KT2440 1046901 NP_745380.1 CDS PP_3237 NC_002947.3 3672950 3673840 D similar to SP:P03807; identified by sequence similarity; universal stress protein 3672950..3673840 Pseudomonas putida KT2440 1046885 NP_745381.1 CDS PP_3238 NC_002947.3 3673980 3674552 R similar to GB:D13173, PID:217113, and SP:P50032; identified by sequence similarity; transcriptional regulator PyrR complement(3673980..3674552) Pseudomonas putida KT2440 1046884 NP_745382.1 CDS PP_3239 NC_002947.3 3674784 3675770 D similar to GP:5524531, and GP:5524531; identified by sequence similarity; Tn4652, cointegrate resolution protein T 3674784..3675770 Pseudomonas putida KT2440 1046886 NP_745383.1 CDS PP_3240 NC_002947.3 3675826 3675990 D similar to GP:3204406; identified by sequence similarity; hypothetical protein 3675826..3675990 Pseudomonas putida KT2440 1046887 NP_745384.1 CDS PP_3241 NC_002947.3 3676342 3676842 R similar to GB:L08012, PID:311023, and SP:Q56592; identified by sequence similarity; hypothetical protein complement(3676342..3676842) Pseudomonas putida KT2440 1046888 NP_745385.1 CDS PP_3242 NC_002947.3 3676995 3678563 D identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 3676995..3678563 Pseudomonas putida KT2440 1046889 NP_745386.1 CDS PP_3243 NC_002947.3 3678606 3679115 R identified by match to TIGR protein family HMM TIGR01575; acetyltransferase complement(3678606..3679115) Pseudomonas putida KT2440 1046891 NP_745387.1 CDS mgtC NC_002947.3 3679133 3679846 R identified by match to PFAM protein family HMM PF02308; magnesium transporter MgtC family protein complement(3679133..3679846) Pseudomonas putida KT2440 1046892 NP_745388.1 CDS PP_3245 NC_002947.3 3679953 3680231 R hypothetical protein complement(3679953..3680231) Pseudomonas putida KT2440 1046893 NP_745389.1 CDS PP_3246 NC_002947.3 3680244 3680711 D similar to GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, PID:339920, GB:J04982, GB:J03593, GB:J02966, SP:P05141, SP:P12235, PID:178659, PID:339725, and PID:339920; identified by sequence similarity; fatty acid hydroxylase 3680244..3680711 Pseudomonas putida KT2440 1046895 NP_745390.1 CDS PP_3247 NC_002947.3 3680755 3681648 R identified by match to TIGR protein family HMM TIGR00841; bile acid/Na+ symporter family protein complement(3680755..3681648) Pseudomonas putida KT2440 1046894 NP_745391.1 CDS PP_3248 NC_002947.3 3681833 3682696 D identified by match to PFAM protein family HMM PF04261; Dyp-type peroxidase 3681833..3682696 Pseudomonas putida KT2440 1046896 NP_745392.1 CDS PP_3249 NC_002947.3 3682879 3683697 D similar to GB:L07807, GB:L07810, GB:L07808, GB:L07809, SP:Q05193, PID:181849, and PID:181851; identified by sequence similarity; aldo/keto reductase 3682879..3683697 Pseudomonas putida KT2440 1046897 NP_745393.1 CDS PP_3250 NC_002947.3 3683702 3684985 D identified by match to PFAM protein family HMM PF04172; major facilitator superfamily transporter 3683702..3684985 Pseudomonas putida KT2440 1046900 NP_745394.1 CDS PP_3251 NC_002947.3 3685590 3686921 D hypothetical protein 3685590..3686921 Pseudomonas putida KT2440 1046898 NP_745395.1 CDS PP_3252 NC_002947.3 3686924 3687874 D identified by match to TIGR protein family HMM TIGR00537; HemK family modification methylase 3686924..3687874 Pseudomonas putida KT2440 1046899 NP_745396.1 CDS PP_3253 NC_002947.3 3687881 3688987 D ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 3687881..3688987 Pseudomonas putida KT2440 1046906 NP_745397.1 CDS PP_3254 NC_002947.3 3688978 3689631 D similar to SP:P80094; identified by sequence similarity; nucleosidase 3688978..3689631 Pseudomonas putida KT2440 1046902 NP_745398.1 CDS PP_3255 NC_002947.3 3689717 3690538 D identified by match to PFAM protein family HMM PF02735; hypothetical protein 3689717..3690538 Pseudomonas putida KT2440 1046903 NP_745399.1 CDS PP_3256 NC_002947.3 3690560 3691219 R similar to GB:M66160, SP:P26977, and PID:154288; identified by sequence similarity; glycosyl transferase family protein complement(3690560..3691219) Pseudomonas putida KT2440 1046904 NP_745400.1 CDS PP_3257 NC_002947.3 3691216 3691815 R similar to GB:X75771, and PID:455422; identified by sequence similarity; methyltransferase complement(3691216..3691815) Pseudomonas putida KT2440 1046908 NP_745401.1 CDS PP_3258 NC_002947.3 3691827 3692582 R similar to GB:Z23140, SP:P43221, and PID:312981; identified by sequence similarity; LmbE family protein complement(3691827..3692582) Pseudomonas putida KT2440 1046914 NP_745402.1 CDS PP_3259 NC_002947.3 3692579 3693622 R similar to GB:X80061, and PID:510823; identified by sequence similarity; acyl-CoA dehydrogenase complement(3692579..3693622) Pseudomonas putida KT2440 1046905 NP_745403.1 CDS ligD NC_002947.3 3693663 3696164 R catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(3693663..3696164) Pseudomonas putida KT2440 1046910 NP_745404.1 CDS PP_3261 NC_002947.3 3696355 3696756 D similar to GP:9947860; identified by sequence similarity; hypothetical protein 3696355..3696756 Pseudomonas putida KT2440 1046907 NP_745405.1 CDS PP_3262 NC_002947.3 3696753 3696977 D similar to SP:P08002; identified by sequence similarity; metallothionein 3696753..3696977 Pseudomonas putida KT2440 1046913 NP_745406.1 CDS PP_3263 NC_002947.3 3697514 3698467 R hypothetical protein complement(3697514..3698467) Pseudomonas putida KT2440 1046909 NP_745407.1 CDS PP_3264 NC_002947.3 3698467 3699669 R identified by match to PFAM protein family HMM PF00614; cardiolipin synthase 2 complement(3698467..3699669) Pseudomonas putida KT2440 1046911 NP_745408.1 CDS PP_3265 NC_002947.3 3699666 3700439 R identified by match to PFAM protein family HMM PF03372; hypothetical protein complement(3699666..3700439) Pseudomonas putida KT2440 1046918 NP_745409.1 CDS PP_3266 NC_002947.3 3700436 3701488 R identified by match to PFAM protein family HMM PF01904; hypothetical protein complement(3700436..3701488) Pseudomonas putida KT2440 1046912 NP_745410.1 CDS PP_3267 NC_002947.3 3701568 3702164 D identified by match to PFAM protein family HMM PF00574; Clp protease 3701568..3702164 Pseudomonas putida KT2440 1046915 NP_745411.1 CDS PP_3268 NC_002947.3 3702166 3702564 R identified by match to TIGR protein family HMM TIGR00127; MutT/nudix family protein complement(3702166..3702564) Pseudomonas putida KT2440 1046916 NP_745412.1 CDS PP_3269 NC_002947.3 3702752 3703009 D hypothetical protein 3702752..3703009 Pseudomonas putida KT2440 1046935 NP_745413.1 CDS phaL NC_002947.3 3703944 3705998 R catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase complement(3703944..3705998) Pseudomonas putida KT2440 1046917 NP_745414.1 CDS phaK NC_002947.3 3706036 3707289 R similar to GP:3253207, and GP:3253207; identified by sequence similarity; porin complement(3706036..3707289) Pseudomonas putida KT2440 1046920 NP_745415.1 CDS actP NC_002947.3 3707308 3708870 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(3707308..3708870) Pseudomonas putida KT2440 1046919 NP_745416.1 CDS PP_3273 NC_002947.3 3708867 3709175 R hypothetical protein complement(3708867..3709175) Pseudomonas putida KT2440 1046921 NP_745417.1 CDS phaI NC_002947.3 3709317 3710393 R similar to GP:3253205, and GP:3253205; identified by sequence similarity; phenylacetate-CoA oxygenase/reductase subunit PaaK complement(3709317..3710393) Pseudomonas putida KT2440 1046923 NP_745418.1 CDS phaH NC_002947.3 3710409 3710942 R similar to GP:3253204, and GP:3253204; identified by sequence similarity; phenylacetate-CoA oxygenase subunit PaaJ complement(3710409..3710942) Pseudomonas putida KT2440 1046922 NP_745419.1 CDS PP_3276 NC_002947.3 3710929 3711687 R similar to GP:3253203, and GP:3253203; identified by sequence similarity; phenylacetate-CoA oxygenase subunit PaaI complement(3710929..3711687) Pseudomonas putida KT2440 1046925 NP_745420.1 CDS paaB NC_002947.3 3711696 3711977 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(3711696..3711977) Pseudomonas putida KT2440 1046924 NP_745421.1 CDS paaA NC_002947.3 3712003 3712992 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(3712003..3712992) Pseudomonas putida KT2440 1046926 NP_745422.1 CDS phaE NC_002947.3 3713191 3714510 R similar to GB:M24493, SP:P00362, PID:142952, GB:M24493, SP:P00362, PID:142952, SP:P11886, GB:X14913, and PID:45506; identified by sequence similarity; phenylacetate-CoA ligase complement(3713191..3714510) Pseudomonas putida KT2440 1046927 NP_745423.1 CDS phaD NC_002947.3 3714632 3715852 R catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase complement(3714632..3715852) Pseudomonas putida KT2440 1046928 NP_745424.1 CDS PP_3281 NC_002947.3 3715845 3716285 R similar to GP:11072188, and GP:10635044; identified by sequence similarity; phenylacetic acid degradation protein PaaD complement(3715845..3716285) Pseudomonas putida KT2440 1046930 NP_745425.1 CDS paaC NC_002947.3 3716278 3717795 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase complement(3716278..3717795) Pseudomonas putida KT2440 1046929 NP_745426.1 CDS phaB NC_002947.3 3717798 3718589 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3717798..3718589) Pseudomonas putida KT2440 1046931 NP_745427.1 CDS PP_3284 NC_002947.3 3718624 3719397 R similar to GP:3253197, and GP:3253197; identified by sequence similarity; enoyl-CoA hydratase complement(3718624..3719397) Pseudomonas putida KT2440 1046932 NP_745428.1 CDS phaM NC_002947.3 3719744 3720343 D similar to GP:3253209, and GP:3253209; identified by sequence similarity; phenylacetic acid degradation protein PaaY 3719744..3720343 Pseudomonas putida KT2440 1046933 NP_745429.1 CDS phaN NC_002947.3 3720421 3721344 D similar to GP:3253210, and GP:3253210; identified by sequence similarity; PaaX family transcriptional regulator 3720421..3721344 Pseudomonas putida KT2440 1046936 NP_745430.1 CDS PP_3287 NC_002947.3 3721403 3722200 R similar to GP:3253196; identified by sequence similarity; Crp/Fnr family transcriptional regulator complement(3721403..3722200) Pseudomonas putida KT2440 1046939 NP_745431.1 CDS PP_3288 NC_002947.3 3722741 3723667 D similar to SP:P03807; identified by sequence similarity; universal stress protein 3722741..3723667 Pseudomonas putida KT2440 1046934 NP_745432.1 CDS PP_3289 NC_002947.3 3723697 3724245 R identified by match to PFAM protein family HMM PF00583; acetyltransferase complement(3723697..3724245) Pseudomonas putida KT2440 1046951 NP_745433.1 CDS PP_3290 NC_002947.3 3724428 3725354 D identified by match to PFAM protein family HMM PF00582; universal stress protein 3724428..3725354 Pseudomonas putida KT2440 1046937 NP_745434.1 CDS PP_3291 NC_002947.3 3725345 3726712 D identified by match to PFAM protein family HMM PF00753; metallo-beta-lactamase 3725345..3726712 Pseudomonas putida KT2440 1046938 NP_745435.1 CDS PP_3292 NC_002947.3 3726785 3727429 D hypothetical protein 3726785..3727429 Pseudomonas putida KT2440 1046940 NP_745436.1 CDS PP_3293 NC_002947.3 3727489 3727914 R similar to GP:3413418; identified by sequence similarity; hypothetical protein complement(3727489..3727914) Pseudomonas putida KT2440 1046941 NP_745437.1 CDS PP_3294 NC_002947.3 3728127 3729017 D identified by match to PFAM protein family HMM PF00582; universal stress protein 3728127..3729017 Pseudomonas putida KT2440 1046943 NP_745438.1 CDS PP_3295 NC_002947.3 3729028 3729507 D identified by match to PFAM protein family HMM PF04143; hypothetical protein 3729028..3729507 Pseudomonas putida KT2440 1046946 NP_745439.1 CDS PP_3296 NC_002947.3 3729464 3729943 D identified by match to PFAM protein family HMM PF03675; hypothetical protein 3729464..3729943 Pseudomonas putida KT2440 1046942 NP_745440.1 CDS PP_3297 NC_002947.3 3730172 3730702 D hypothetical protein 3730172..3730702 Pseudomonas putida KT2440 1046944 NP_745441.1 CDS PP_3298 NC_002947.3 3731100 3731603 D similar to GP:9948158; identified by sequence similarity; CinA domain-containing protein 3731100..3731603 Pseudomonas putida KT2440 1046945 NP_745442.1 CDS PP_3299 NC_002947.3 3731774 3733237 R identified by match to PFAM protein family HMM PF02321; outer membrane lipoprotein complement(3731774..3733237) Pseudomonas putida KT2440 1046947 NP_745443.1 CDS PP_3300 NC_002947.3 3733309 3733923 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 3733309..3733923 Pseudomonas putida KT2440 1046950 NP_745444.1 CDS PP_3301 NC_002947.3 3734001 3735104 D identified by match to TIGR protein family HMM TIGR01740; RND efflux membrane fusion protein 3734001..3735104 Pseudomonas putida KT2440 1046948 NP_745445.1 CDS PP_3302 NC_002947.3 3735101 3738193 D identified by match to PFAM protein family HMM PF00873; RND efflux transporter 3735101..3738193 Pseudomonas putida KT2440 1046454 NP_745446.2 CDS PP_3303 NC_002947.3 3738266 3739558 D FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase 3738266..3739558 Pseudomonas putida KT2440 1046958 NP_745447.1 CDS PP_3304 NC_002947.3 3739555 3740793 D identified by match to TIGR protein family HMM TIGR00880; Bcr/CflA family multidrug resistance transporter 3739555..3740793 Pseudomonas putida KT2440 1046949 NP_745448.1 CDS PP_3305 NC_002947.3 3740946 3741929 R identified by match to PFAM protein family HMM PF03741; TerC family membrane protein complement(3740946..3741929) Pseudomonas putida KT2440 1046952 NP_745449.1 CDS PP_3306 NC_002947.3 3742342 3742548 R similar to GP:6714754; identified by sequence similarity; hypothetical protein complement(3742342..3742548) Pseudomonas putida KT2440 1046953 NP_745450.1 CDS PP_3307 NC_002947.3 3742698 3743078 D hypothetical protein 3742698..3743078 Pseudomonas putida KT2440 1046954 NP_745451.1 CDS PP_3308 NC_002947.3 3743190 3743717 D similar to GP:6425609; identified by sequence similarity; oxidoreductase, small subunit 3743190..3743717 Pseudomonas putida KT2440 1046453 NP_745452.1 CDS PP_3309 NC_002947.3 3743714 3744715 D identified by match to PFAM protein family HMM PF03450; oxidoreductase, molybdopterin-binding subunit 3743714..3744715 Pseudomonas putida KT2440 1046955 NP_745453.1 CDS PP_3310 NC_002947.3 3744712 3746928 D similar to GP:2463459; identified by sequence similarity; oxidoreductase, large subunit 3744712..3746928 Pseudomonas putida KT2440 1046956 NP_745454.1 CDS PP_3311 NC_002947.3 3747012 3748757 R similar to GB:U03100, GB:D14705, GB:L22080, GB:D13866, SP:P35221, PID:1172426, PID:347316, PID:404105, PID:433411, GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; glutathione-regulated potassium-proton antiporter complement(3747012..3748757) Pseudomonas putida KT2440 1046963 NP_745455.1 CDS PP_3312 NC_002947.3 3748952 3749341 R similar to GP:13568405; identified by sequence similarity; heat shock protein complement(3748952..3749341) Pseudomonas putida KT2440 1046957 NP_745456.1 CDS PP_3313 NC_002947.3 3749482 3749853 R similar to GB:M34254, SP:P00309, PID:149776, GB:M34254, SP:P00309, and PID:149776; identified by sequence similarity; heat shock protein complement(3749482..3749853) Pseudomonas putida KT2440 1046959 NP_745457.1 CDS PP_3314 NC_002947.3 3749881 3750336 R identified by match to PFAM protein family HMM PF00011; heat shock protein 20 complement(3749881..3750336) Pseudomonas putida KT2440 1046960 NP_745458.1 CDS PP_3315 NC_002947.3 3750526 3750996 R hypothetical protein complement(3750526..3750996) Pseudomonas putida KT2440 1046961 NP_745459.1 CDS PP_3316 NC_002947.3 3751057 3753879 R identified by match to PFAM protein family HMM PF02861; chaperone-associated ATPase complement(3751057..3753879) Pseudomonas putida KT2440 1046962 NP_745460.1 CDS PP_3317 NC_002947.3 3753933 3754058 R similar to GP:9756948; identified by sequence similarity; hypothetical protein complement(3753933..3754058) Pseudomonas putida KT2440 1046964 NP_745461.1 CDS PP_3318 NC_002947.3 3754045 3754287 R hypothetical protein complement(3754045..3754287) Pseudomonas putida KT2440 1046966 NP_745462.1 CDS PP_3319 NC_002947.3 3754557 3756758 D similar to GP:6759486; identified by sequence similarity; sensory box protein 3754557..3756758 Pseudomonas putida KT2440 1046968 NP_745463.1 CDS PP_3320 NC_002947.3 3756944 3757111 R hypothetical protein complement(3756944..3757111) Pseudomonas putida KT2440 1046965 NP_745464.1 CDS PP_3321 NC_002947.3 3757176 3757688 D hypothetical protein 3757176..3757688 Pseudomonas putida KT2440 1046967 NP_745465.1 CDS hemB-2 NC_002947.3 3757685 3758686 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3757685..3758686 Pseudomonas putida KT2440 1046969 NP_745466.1 CDS PP_3323 NC_002947.3 3758733 3759344 D similar to GB:X59303, GB:X91861, SP:P26640, and PID:31545; identified by sequence similarity; CobW/P47K family protein 3758733..3759344 Pseudomonas putida KT2440 1046987 NP_745467.1 CDS PP_3324 NC_002947.3 3759365 3760339 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 3759365..3760339 Pseudomonas putida KT2440 1046975 NP_745468.1 CDS PP_3325 NC_002947.3 3760650 3762740 D identified by match to PFAM protein family HMM PF00593; outer membrane ferric siderophore receptor 3760650..3762740 Pseudomonas putida KT2440 1046970 NP_745469.1 CDS PP_3326 NC_002947.3 3762755 3763477 D similar to GB:L10982, GB:L10982, PID:432188, GB:L10982, GB:L10982, and PID:432188; identified by sequence similarity; hypothetical protein 3762755..3763477 Pseudomonas putida KT2440 1046972 NP_745470.1 CDS PP_3328 NC_002947.3 3765152 3765565 R similar to GP:15162288; identified by sequence similarity; ring-cleaving dioxygenase complement(3765152..3765565) Pseudomonas putida KT2440 1046973 NP_745471.1 CDS PP_3329 NC_002947.3 3766565 3767854 D similar to GP:3288609; identified by sequence similarity; hypothetical protein 3766565..3767854 Pseudomonas putida KT2440 1046976 NP_745472.1 CDS PP_3330 NC_002947.3 3768411 3770597 D identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor 3768411..3770597 Pseudomonas putida KT2440 1046974 NP_745473.1 CDS PP_3331 NC_002947.3 3770585 3772078 D hypothetical protein 3770585..3772078 Pseudomonas putida KT2440 1046452 NP_745474.1 CDS PP_3332 NC_002947.3 3772385 3772675 D similar to GP:9951825; identified by sequence similarity; cytochrome c-type protein 3772385..3772675 Pseudomonas putida KT2440 1046977 NP_745475.1 CDS PP_3335 NC_002947.3 3774368 3774970 R similar to GP:9949956; identified by sequence similarity; hypothetical protein complement(3774368..3774970) Pseudomonas putida KT2440 1046981 NP_745476.1 CDS PP_3336 NC_002947.3 3775021 3775473 R hypothetical protein complement(3775021..3775473) Pseudomonas putida KT2440 1046980 NP_745477.1 CDS PP_3337 NC_002947.3 3775577 3775972 R similar to GP:9946290, and GP:9946290; identified by sequence similarity; hypothetical protein complement(3775577..3775972) Pseudomonas putida KT2440 1046982 NP_745478.1 CDS PP_3338 NC_002947.3 3776046 3776315 D similar to GB:M86697, PID:150672, GB:M86697, and PID:150672; identified by sequence similarity; ubiquinol oxidase subunit II 3776046..3776315 Pseudomonas putida KT2440 1046983 NP_745479.1 CDS PP_3339 NC_002947.3 3776458 3776865 D hypothetical protein 3776458..3776865 Pseudomonas putida KT2440 1046985 NP_745480.1 CDS PP_3340 NC_002947.3 3776944 3778995 D identified by match to PFAM protein family HMM PF00593; TonB-dependent receptor 3776944..3778995 Pseudomonas putida KT2440 1046984 NP_745481.1 CDS PP_3341 NC_002947.3 3779043 3779459 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(3779043..3779459) Pseudomonas putida KT2440 1046996 NP_745482.1 CDS nikA NC_002947.3 3779547 3781121 D similar to GB:L01694, SP:Q03113, PID:182994, GB:L01694, SP:Q03113, and PID:182994; identified by sequence similarity; nickel ABC transporter substrate-binding protein 3779547..3781121 Pseudomonas putida KT2440 1046986 NP_745483.1 CDS nikB NC_002947.3 3781123 3782064 D with NikACDE is involved in nickel transport into the cell; nickel ABC transporter permease 3781123..3782064 Pseudomonas putida KT2440 1046989 NP_745484.1 CDS nikC NC_002947.3 3782061 3782906 D with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC 3782061..3782906 Pseudomonas putida KT2440 1046990 NP_745485.1 CDS nikD NC_002947.3 3782907 3783677 D with NikABCE is involved in nickel transport into the cell; nickel transporter ATP-binding protein NikD 3782907..3783677 Pseudomonas putida KT2440 1046988 NP_745486.1 CDS nikE NC_002947.3 3783674 3784495 D with NikABCD is involved with nickel transport into the cell; nickel transporter ATP-binding protein NikE 3783674..3784495 Pseudomonas putida KT2440 1046991 NP_745487.1 CDS PP_3347 NC_002947.3 3784670 3784804 R hypothetical protein complement(3784670..3784804) Pseudomonas putida KT2440 1046553 NP_745488.1 CDS PP_3348 NC_002947.3 3784803 3785948 D identified by match to PFAM protein family HMM PF00990; diguanylate cyclase 3784803..3785948 Pseudomonas putida KT2440 1046992 NP_745489.1 CDS PP_3349 NC_002947.3 3785964 3787205 R similar to GP:3097809, and SP:P77589; identified by sequence similarity; 3-hydroxyphenylpropionic transporter MhpT complement(3785964..3787205) Pseudomonas putida KT2440 1046995 NP_745490.1 CDS PP_3350 NC_002947.3 3787240 3788631 R hypothetical protein complement(3787240..3788631) Pseudomonas putida KT2440 1046998 NP_745491.1 CDS PP_3351 NC_002947.3 3788702 3788809 R hypothetical protein complement(3788702..3788809) Pseudomonas putida KT2440 1046619 NP_745492.1 CDS PP_3352 NC_002947.3 3788893 3790557 D similar to SP:P51691, GB:Z32517, GB:U03505, and PID:488752; identified by sequence similarity; arylsulfatase 3788893..3790557 Pseudomonas putida KT2440 1046993 NP_745493.1 CDS PP_3353 NC_002947.3 3790704 3791579 D similar to GB:X04968, PID:42405, GB:X04968, and PID:42405; identified by sequence similarity; hypothetical protein 3790704..3791579 Pseudomonas putida KT2440 1046997 NP_745494.1 CDS PP_3354 NC_002947.3 3791560 3793314 R identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase complement(3791560..3793314) Pseudomonas putida KT2440 1047004 NP_745495.1 CDS PP_3355 NC_002947.3 3793329 3794519 R similar to GP:6273623, and GP:6273623; identified by sequence similarity; beta-ketothiolase complement(3793329..3794519) Pseudomonas putida KT2440 1046994 NP_745496.1 CDS fcs NC_002947.3 3794567 3796336 R catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase complement(3794567..3796336) Pseudomonas putida KT2440 1046999 NP_745497.1 CDS vdh NC_002947.3 3796542 3797990 R similar to GP:3116018, GB:D17462, SP:P43438, and PID:487281; identified by sequence similarity; vanillin dehydrogenase complement(3796542..3797990) Pseudomonas putida KT2440 1047002 NP_745498.1 CDS ech NC_002947.3 3798066 3798896 R catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase complement(3798066..3798896) Pseudomonas putida KT2440 1047000 NP_745499.1 CDS PP_3359 NC_002947.3 3799094 3799564 D similar to GP:6740921, and GP:6740921; identified by sequence similarity; hydroxycinnamic acid degradation regulator 3799094..3799564 Pseudomonas putida KT2440 1046535 NP_745500.1 CDS PP_3360 NC_002947.3 3799663 3800787 D similar to GB:U00006, SP:P02408, GB:V00339, PID:396324, PID:42816, GB:U00096, PID:1790417, GB:U00006, SP:P02408, GB:V00339, PID:396324, PID:42816, GB:U00096, and PID:1790417; identified by sequence similarity; hypothetical protein 3799663..3800787 Pseudomonas putida KT2440 1047001 NP_745501.1 CDS PP_3361 NC_002947.3 3800866 3803913 R similar to GP:7294449; identified by sequence similarity; hypothetical protein complement(3800866..3803913) Pseudomonas putida KT2440 1047003 NP_745502.1 CDS PP_3362 NC_002947.3 3804057 3804497 D similar to GP:6224605; identified by sequence similarity; AsnC family transcriptional regulator 3804057..3804497 Pseudomonas putida KT2440 1047006 NP_745503.1 CDS PP_3363 NC_002947.3 3804538 3805155 R similar to SP:P23030, GB:X54523, and PID:45524; identified by sequence similarity; hypothetical protein complement(3804538..3805155) Pseudomonas putida KT2440 1047020 NP_745504.1 CDS PP_3364 NC_002947.3 3805382 3807925 D similar to GP:6521382; identified by sequence similarity; response regulator 3805382..3807925 Pseudomonas putida KT2440 1047005 NP_745505.1 CDS PP_3365 NC_002947.3 3808052 3809695 R catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase complement(3808052..3809695) Pseudomonas putida KT2440 1047007 NP_745506.1 CDS PP_3366 NC_002947.3 3809881 3810762 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3809881..3810762 Pseudomonas putida KT2440 1047018 NP_745507.1 CDS PP_3367 NC_002947.3 3810747 3811406 R similar to GP:7379781; identified by sequence similarity; hypothetical protein complement(3810747..3811406) Pseudomonas putida KT2440 1046537 NP_745508.1 CDS PP_3368 NC_002947.3 3811674 3812858 D similar to GP:4808411; identified by sequence similarity; major facilitator family transporter 3811674..3812858 Pseudomonas putida KT2440 1046546 NP_745509.1 CDS PP_3369 NC_002947.3 3812921 3813772 D similar to GP:6498264, and GP:9947058; identified by sequence similarity; LysR family transcriptional regulator 3812921..3813772 Pseudomonas putida KT2440 1046607 NP_745510.1 CDS PP_3370 NC_002947.3 3813869 3814864 D similar to GP:6468420; identified by sequence similarity; aldo/keto reductase 3813869..3814864 Pseudomonas putida KT2440 1046450 NP_745511.1 CDS PP_3371 NC_002947.3 3814857 3816116 R identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase complement(3814857..3816116) Pseudomonas putida KT2440 1046764 NP_745512.1 CDS cpxR NC_002947.3 3816116 3816817 R similar to GB:M17783, SP:P07093, PID:183064, PID:412157, GB:L34155, SP:Q16787, PID:1149513, and PID:551597; identified by sequence similarity; winged helix family two component transcriptional regulator complement(3816116..3816817) Pseudomonas putida KT2440 1047021 NP_745513.1 CDS PP_3373 NC_002947.3 3817015 3819378 D identified by match to PFAM protein family HMM PF01103; surface antigen family protein 3817015..3819378 Pseudomonas putida KT2440 1047023 NP_745514.1 CDS PP_3374 NC_002947.3 3819509 3819892 D hypothetical protein 3819509..3819892 Pseudomonas putida KT2440 1046529 NP_745515.1 CDS endA-2 NC_002947.3 3819907 3820872 D similar to GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; deoxyribonuclease I 3819907..3820872 Pseudomonas putida KT2440 1047019 NP_745516.1 CDS kguD NC_002947.3 3820915 3821877 R similar to SP:P37666; identified by sequence similarity; 2-ketogluconate 6-phosphate reductase complement(3820915..3821877) Pseudomonas putida KT2440 1047015 NP_745517.1 CDS PP_3377 NC_002947.3 3821888 3823180 R identified by match to TIGR protein family HMM TIGR00881; major facilitator superfamily transporter complement(3821888..3823180) Pseudomonas putida KT2440 1047016 NP_745518.1 CDS kguK NC_002947.3 3823236 3824186 R similar to GP:9948289, GP:9948289, GB:X74614, SP:Q14990, and PID:474426; identified by sequence similarity; PfkB domain-containing protein complement(3823236..3824186) Pseudomonas putida KT2440 1047012 NP_745519.1 CDS PP_3379 NC_002947.3 3824179 3824958 R xylose isomerase complement(3824179..3824958) Pseudomonas putida KT2440 1047009 NP_745520.1 CDS ptxS NC_002947.3 3825023 3826042 R similar to GP:3282331; identified by sequence similarity; PtxS family transcriptional regulator complement(3825023..3826042) Pseudomonas putida KT2440 1046449 NP_745521.1 CDS PP_3381 NC_002947.3 3826645 3827973 R similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase complement(3826645..3827973) Pseudomonas putida KT2440 1046526 NP_745522.1 CDS PP_3382 NC_002947.3 3828332 3829585 R similar to GP:5532314; identified by sequence similarity; gluconate 2-dehydrogenase complement(3828332..3829585) Pseudomonas putida KT2440 1046527 NP_745523.1 CDS PP_3383 NC_002947.3 3829592 3831376 R similar to GP:2584862, and GP:2584862; identified by sequence similarity; gluconate 2-dehydrogenase complement(3829592..3831376) Pseudomonas putida KT2440 1046533 NP_745524.1 CDS PP_3384 NC_002947.3 3831380 3832120 R identified by match to TIGR protein family HMM TIGR01409; gluconate 2-dehydrogenase complement(3831380..3832120) Pseudomonas putida KT2440 1046448 NP_745525.1 CDS PP_3385 NC_002947.3 3832471 3833319 D hypothetical protein 3832471..3833319 Pseudomonas putida KT2440 1046528 NP_745526.1 CDS vgrG-2 NC_002947.3 3833333 3835510 D similar to GP:2920640; identified by sequence similarity; vgrG protein 3833333..3835510 Pseudomonas putida KT2440 1046531 NP_745527.1 CDS PP_3387 NC_002947.3 3835441 3836388 D hypothetical protein 3835441..3836388 Pseudomonas putida KT2440 1046530 NP_745528.1 CDS PP_3388 NC_002947.3 3836403 3839075 D identified by match to PFAM protein family HMM PF04211; hypothetical protein 3836403..3839075 Pseudomonas putida KT2440 1046523 NP_745529.1 CDS PP_3389 NC_002947.3 3839075 3840232 D hypothetical protein 3839075..3840232 Pseudomonas putida KT2440 1046447 NP_745530.1 CDS PP_3390 NC_002947.3 3840235 3841515 R similar to GP:3253207; identified by sequence similarity; porin complement(3840235..3841515) Pseudomonas putida KT2440 1046521 NP_745531.1 CDS PP_3391 NC_002947.3 3841565 3842881 R similar to GB:L34058, SP:P55290, PID:1381790, PID:1381792, and PID:506408; identified by sequence similarity; tartrate MFS transporter complement(3841565..3842881) Pseudomonas putida KT2440 1046522 NP_745532.1 CDS PP_3392 NC_002947.3 3842949 3843473 R similar to GB:J00124, GB:X59475, GB:M28646, SP:P02533, and PID:386848; identified by sequence similarity; anhydrase 3 protein complement(3842949..3843473) Pseudomonas putida KT2440 1046768 NP_745533.1 CDS PP_3393 NC_002947.3 3843486 3844676 R identified by match to PFAM protein family HMM PF02515; CAIB/BAIF family protein complement(3843486..3844676) Pseudomonas putida KT2440 1046451 NP_745534.1 CDS PP_3394 NC_002947.3 3844701 3845630 R similar to GP:3426048, GB:M63959, GB:U06976, SP:P30533, PID:1235526, PID:177874, and PID:463882; identified by sequence similarity; 3-hydroxy-3-methylglutaryl-CoA lyase complement(3844701..3845630) Pseudomonas putida KT2440 1046769 NP_745535.1 CDS PP_3395 NC_002947.3 3845728 3846693 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(3845728..3846693) Pseudomonas putida KT2440 1046462 NP_745536.1 CDS PP_3396 NC_002947.3 3846908 3848236 D hypothetical protein 3846908..3848236 Pseudomonas putida KT2440 1046278 NP_745537.1 CDS PP_3397 NC_002947.3 3848233 3850500 D hypothetical protein 3848233..3850500 Pseudomonas putida KT2440 1046457 NP_745538.1 CDS PP_3398 NC_002947.3 3850516 3850989 D similar to GB:Z34974, GB:X79293, PID:1770488, PID:535015, PID:550115, SP:Q04222, and PID:141982; identified by sequence similarity; curlin associated repeat protein 3850516..3850989 Pseudomonas putida KT2440 1046482 NP_745539.1 CDS alkB NC_002947.3 3852610 3853257 D similar to GP:6759911, GB:J05175, SP:P16442, PID:1783208, PID:1783212, PID:1783214, PID:1783218, PID:1783226, PID:2352626, PID:340078, and PID:992596; identified by sequence similarity; 2OG-Fe(II) oxygenase 3852610..3853257 Pseudomonas putida KT2440 1046505 NP_745540.1 CDS PP_3401 NC_002947.3 3853427 3853714 D hypothetical protein 3853427..3853714 Pseudomonas putida KT2440 1046209 NP_745541.1 CDS PP_3402 NC_002947.3 3853796 3854191 R hypothetical protein complement(3853796..3854191) Pseudomonas putida KT2440 1046497 NP_745542.1 CDS PP_3403 NC_002947.3 3854312 3855199 R similar to GP:9948463, and GP:9948463; identified by sequence similarity; pirin complement(3854312..3855199) Pseudomonas putida KT2440 1044849 NP_745543.1 CDS PP_3404 NC_002947.3 3855296 3856168 R identified by match to PFAM protein family HMM PF00561; alpha/beta hydrolase complement(3855296..3856168) Pseudomonas putida KT2440 1045781 NP_745544.1 CDS PP_3405 NC_002947.3 3856190 3856819 R similar to GP:9948339; identified by sequence similarity; lysine exporter protein LysE/YggA complement(3856190..3856819) Pseudomonas putida KT2440 1046516 NP_745545.1 CDS PP_3406 NC_002947.3 3856944 3857423 D identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 3856944..3857423 Pseudomonas putida KT2440 1046059 NP_745546.1 CDS PP_3407 NC_002947.3 3857420 3857650 D hypothetical protein 3857420..3857650 Pseudomonas putida KT2440 1046499 NP_745547.1 CDS PP_3409 NC_002947.3 3858740 3859129 D similar to GB:M60484, GB:X12656, GB:J03805, SP:P05323, SP:P11082, PID:178438, PID:190226, and PID:35581; identified by sequence similarity; cobalamin biosynthesis protein cobE 3858740..3859129 Pseudomonas putida KT2440 1046190 NP_745548.1 CDS cobM NC_002947.3 3859164 3859916 D similar to GB:M16237, GB:M16243, GB:M16244, GB:M16245, GB:K03212, GB:K03213, GB:K03214, GB:K03215, GB:K03216, GB:K03217, GB:K03218, GB:X04000, GB:X03996, GB:X03998, GB:X03995, GB:X02647, GB:X03999, GB:X03997, SP:P12931, PID:1848077, and PID:338460; identified by sequence similarity; precorrin-4 C(11)-methyltransferase 3859164..3859916 Pseudomonas putida KT2440 1046496 NP_745549.1 CDS PP_3411 NC_002947.3 3859983 3860225 D similar to GP:9947837, and GP:9947837; identified by sequence similarity; hypothetical protein 3859983..3860225 Pseudomonas putida KT2440 1045596 NP_745550.1 CDS PP_3412 NC_002947.3 3860447 3861061 D similar to GB:M28825, GB:M22080, GB:M22163, GB:M22164, GB:M22165, GB:M22166, GB:M22167, GB:X79309, GB:X79308, GB:M27735, GB:M14663, SP:P06126, PID:180046, and PID:530884; identified by sequence similarity; LuxR family transcriptional regulator 3860447..3861061 Pseudomonas putida KT2440 1045869 NP_745551.1 CDS PP_3413 NC_002947.3 3861075 3864356 D similar to GB:L07555, GB:Z30426, GB:Z30430, GB:Z30427, GB:Z30429, GB:Z30428, SP:Q07108, PID:291898, PID:397939, and PID:558352; identified by sequence similarity; Hpt sensor hybrid histidine kinase 3861075..3864356 Pseudomonas putida KT2440 1042718 NP_745552.1 CDS PP_3414 NC_002947.3 3864322 3865641 R similar to GB:Z15114, SP:P05129, and PID:35497; identified by sequence similarity; methyl-accepting chemotaxis transducer/sensory box protein complement(3864322..3865641) Pseudomonas putida KT2440 1046248 NP_745553.1 CDS PP_3415 NC_002947.3 3865855 3866874 R identified by match to PFAM protein family HMM PF00356; LacI family transcriptional regulator complement(3865855..3866874) Pseudomonas putida KT2440 1046272 NP_745554.1 CDS gnuK NC_002947.3 3867081 3867620 D identified by match to TIGR protein family HMM TIGR00041; thermoresistant glucokinase carbohydrate kinase 3867081..3867620 Pseudomonas putida KT2440 1046375 NP_745555.1 CDS gntP NC_002947.3 3867732 3869084 D similar to SP:Q9Z670; identified by sequence similarity; gluconate transporter 3867732..3869084 Pseudomonas putida KT2440 1046240 NP_745556.1 CDS PP_3418 NC_002947.3 3869081 3869473 D similar to GP:9800237; identified by sequence similarity; hypothetical protein 3869081..3869473 Pseudomonas putida KT2440 1046435 NP_745557.1 CDS PP_3419 NC_002947.3 3869488 3870915 R similar to GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, and PID:825686; identified by sequence similarity; Fis family transcriptional regulator complement(3869488..3870915) Pseudomonas putida KT2440 1046273 NP_745558.1 CDS PP_3420 NC_002947.3 3870884 3872377 R similar to GB:L10393, SP:P08048, SP:P17010, and PID:340436; identified by sequence similarity; sensor histidine kinase complement(3870884..3872377) Pseudomonas putida KT2440 1046459 NP_745559.1 CDS PP_3421 NC_002947.3 3872685 3874136 R identified by match to PFAM protein family HMM PF00512; sensor histidine kinase complement(3872685..3874136) Pseudomonas putida KT2440 1046235 NP_745560.1 CDS ltg NC_002947.3 3874311 3874904 R similar to GP:4680732, and GP:4680732; identified by sequence similarity; lytic transglycosylase complement(3874311..3874904) Pseudomonas putida KT2440 1045901 NP_745561.1 CDS xcpT-2 NC_002947.3 3875006 3875515 D similar to GP:4680731, and GP:4680731; identified by sequence similarity; general secretion pathway protein G 3875006..3875515 Pseudomonas putida KT2440 1046427 NP_745562.1 CDS xcpS-2 NC_002947.3 3875506 3876717 D similar to GP:4680733, and GP:17430616; identified by sequence similarity; type II secretion system protein 3875506..3876717 Pseudomonas putida KT2440 1046352 NP_745563.1 CDS mexE NC_002947.3 3876909 3878150 D similar to GB:X73158, and PID:506943; identified by sequence similarity; RND family efflux transporter MFP subunit 3876909..3878150 Pseudomonas putida KT2440 1045704 NP_745564.1 CDS mexF NC_002947.3 3878163 3881342 D similar to GB:X73158, and PID:506943; identified by sequence similarity; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3878163..3881342 Pseudomonas putida KT2440 1046214 NP_745565.1 CDS oprN NC_002947.3 3881339 3882754 D similar to GB:X16050, SP:P12986, and PID:48339; identified by sequence similarity; NodT family RND efflux system outer membrane lipoprotein 3881339..3882754 Pseudomonas putida KT2440 1046237 NP_745566.1 CDS PP_3428 NC_002947.3 3882835 3884034 D identified by match to PFAM protein family HMM PF00515; hypothetical protein 3882835..3884034 Pseudomonas putida KT2440 1046469 NP_745567.1 CDS PP_3429 NC_002947.3 3884113 3885729 D similar to GP:5052340; identified by sequence similarity; histidine kinase 3884113..3885729 Pseudomonas putida KT2440 1045573 NP_745568.1 CDS PP_3430 NC_002947.3 3885736 3887853 R similar to GP:4376185; identified by sequence similarity; PAS/PAC sensor hybrid histidine kinase complement(3885736..3887853) Pseudomonas putida KT2440 1046479 NP_745569.1 CDS PP_3431 NC_002947.3 3887993 3888679 D identified by match to TIGR protein family HMM TIGR01382; ThiJ/PfpI domain-containing protein 3887993..3888679 Pseudomonas putida KT2440 1046181 NP_745570.1 CDS PP_3432 NC_002947.3 3888809 3889615 D similar to GP:9950000; identified by sequence similarity; hypothetical protein 3888809..3889615 Pseudomonas putida KT2440 1046174 NP_745571.1 CDS hpd NC_002947.3 3889639 3890715 R similar to GB:M34065, SP:P30307, PID:180176, GB:M34065, SP:P30307, and PID:180176; identified by sequence similarity; 4-hydroxyphenylpyruvate dioxygenase complement(3889639..3890715) Pseudomonas putida KT2440 1046171 NP_745572.1 CDS PP_3434 NC_002947.3 3890742 3890849 R hypothetical protein complement(3890742..3890849) Pseudomonas putida KT2440 1046231 NP_745573.1 CDS PP_3435 NC_002947.3 3891014 3892600 D identified by match to PFAM protein family HMM PF00563; diguanylate phosphodiesterase 3891014..3892600 Pseudomonas putida KT2440 1046455 NP_745574.1 CDS rarD-2 NC_002947.3 3892634 3893521 D similar to SP:P27844; identified by sequence similarity; RarD protein, DMT superfamily transporter 3892634..3893521 Pseudomonas putida KT2440 1046480 NP_745575.1 CDS PP_3437 NC_002947.3 3893484 3895055 R identified by match to PFAM protein family HMM PF04290; hypothetical protein complement(3893484..3895055) Pseudomonas putida KT2440 1046519 NP_745576.1 CDS PP_3438 NC_002947.3 3895347 3895928 D identified by match to PFAM protein family HMM PF01810; lysine exporter protein LysE/YggA 3895347..3895928 Pseudomonas putida KT2440 1046283 NP_745577.1 CDS PP_3439 NC_002947.3 3895893 3896741 R similar to GP:7619749; identified by sequence similarity; AraC family transcriptional regulator complement(3895893..3896741) Pseudomonas putida KT2440 1046513 NP_745578.1 CDS PP_3440 NC_002947.3 3896789 3897907 R hypothetical protein complement(3896789..3897907) Pseudomonas putida KT2440 1042720 NP_745579.1 CDS PP_3441 NC_002947.3 3897981 3899135 R hypothetical protein complement(3897981..3899135) Pseudomonas putida KT2440 1045723 NP_745580.1 CDS PP_3442 NC_002947.3 3899424 3899591 R hypothetical protein complement(3899424..3899591) Pseudomonas putida KT2440 1046173 NP_745581.1 CDS PP_3443 NC_002947.3 3899590 3901209 D identified by match to TIGR protein family HMM TIGR01722; glyceraldehyde-3-phosphate dehydrogenase 3899590..3901209 Pseudomonas putida KT2440 1045405 NP_745582.1 CDS PP_3444 NC_002947.3 3901320 3901799 D identified by match to PFAM protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 3901320..3901799 Pseudomonas putida KT2440 1046195 NP_745583.1 CDS PP_3445 NC_002947.3 3901824 3903032 D hypothetical protein 3901824..3903032 Pseudomonas putida KT2440 1045524 NP_745584.1 CDS ilvA-1 NC_002947.3 3903147 3904739 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(3903147..3904739) Pseudomonas putida KT2440 1045566 NP_745585.1 CDS PP_3447 NC_002947.3 3904889 3905320 R similar to GP:5230850, and GP:9948836; identified by sequence similarity; transmembrane pair domain-containing protein complement(3904889..3905320) Pseudomonas putida KT2440 1046472 NP_745586.1 CDS nfrB NC_002947.3 3905513 3907687 D similar to GB:M11717, GB:M24743, SP:P08107, PID:188488, PID:188490, PID:188530, PID:32481, PID:32483, PID:386785, PID:639910, GB:M11717, GB:M24743, SP:P08107, PID:188488, PID:188490, PID:188530, PID:32481, PID:32483, PID:386785, and PID:639910; identified by sequence similarity; bacteriophage N4 adsorption protein B 3905513..3907687 Pseudomonas putida KT2440 1046284 NP_745587.1 CDS PP_3449 NC_002947.3 3907684 3908115 D hypothetical protein 3907684..3908115 Pseudomonas putida KT2440 1046250 NP_745588.2 CDS PP_3450 NC_002947.3 3908049 3910688 D hypothetical protein 3908049..3910688 Pseudomonas putida KT2440 1046318 NP_745589.1 CDS PP_3451 NC_002947.3 3910688 3911527 D similar to SP:P28787, GB:X68129, PID:45902, SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; hypothetical protein 3910688..3911527 Pseudomonas putida KT2440 1042626 NP_745590.1 CDS PP_3452 NC_002947.3 3911652 3912743 D similar to GB:U09422, and PID:532545; identified by sequence similarity; diguanylate cyclase 3911652..3912743 Pseudomonas putida KT2440 1046316 NP_745591.1 CDS PP_3453 NC_002947.3 3912774 3914075 R similar to GB:M57730, GB:D17034, SP:P20827, and PID:179321; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase complement(3912774..3914075) Pseudomonas putida KT2440 1045599 NP_745592.1 CDS PP_3454 NC_002947.3 3914082 3914921 R similar to GB:X16453, SP:P13367, and PID:581343; identified by sequence similarity; winged helix family two component transcriptional regulator complement(3914082..3914921) Pseudomonas putida KT2440 1045523 NP_745593.1 CDS PP_3455 NC_002947.3 3915029 3916204 D identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3915029..3916204 Pseudomonas putida KT2440 1045580 NP_745594.1 CDS PP_3456 NC_002947.3 3916216 3919344 D identified by match to PFAM protein family HMM PF00873; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3916216..3919344 Pseudomonas putida KT2440 1045525 NP_745595.1 CDS mobA NC_002947.3 3919406 3919981 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 3919406..3919981 Pseudomonas putida KT2440 1046501 NP_745596.1 CDS PP_3458 NC_002947.3 3920074 3921762 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(3920074..3921762) Pseudomonas putida KT2440 1045574 NP_745597.1 CDS PP_3459 NC_002947.3 3921902 3923041 R hypothetical protein complement(3921902..3923041) Pseudomonas putida KT2440 1046276 NP_745598.1 CDS PP_3460 NC_002947.3 3923055 3923378 R hypothetical protein complement(3923055..3923378) Pseudomonas putida KT2440 1045598 NP_745599.1 CDS PP_3461 NC_002947.3 3923380 3924810 R identified by match to PFAM protein family HMM PF04055; radical SAM domain-containing protein complement(3923380..3924810) Pseudomonas putida KT2440 1045597 NP_745600.1 CDS PP_3462 NC_002947.3 3924835 3926526 D hypothetical protein 3924835..3926526 Pseudomonas putida KT2440 1046274 NP_745601.1 CDS PP_3463 NC_002947.3 3926828 3928321 D identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 3926828..3928321 Pseudomonas putida KT2440 1046275 NP_745602.1 CDS PP_3464 NC_002947.3 3928461 3929774 D hypothetical protein 3928461..3929774 Pseudomonas putida KT2440 1046241 NP_745603.1 CDS PP_3465 NC_002947.3 3931088 3931780 D hypothetical protein 3931088..3931780 Pseudomonas putida KT2440 1045371 NP_745604.1 CDS PP_3466 NC_002947.3 3931764 3933473 R similar to GB:D14037, and PID:436034; identified by sequence similarity; ABC transporter ATP-binding protein complement(3931764..3933473) Pseudomonas putida KT2440 1045372 NP_745605.1 CDS PP_3467 NC_002947.3 3933499 3935409 R identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator complement(3933499..3935409) Pseudomonas putida KT2440 1045526 NP_745606.1 CDS PP_3468 NC_002947.3 3935687 3936070 R hypothetical protein complement(3935687..3936070) Pseudomonas putida KT2440 1046438 NP_745607.1 CDS PP_3469 NC_002947.3 3936212 3937180 D hypothetical protein 3936212..3937180 Pseudomonas putida KT2440 1045579 NP_745608.1 CDS PP_3471 NC_002947.3 3937996 3938793 D hypothetical protein 3937996..3938793 Pseudomonas putida KT2440 1046434 NP_745609.1 CDS csgG NC_002947.3 3938975 3939823 R similar to GB:X64058, SP:P28762, GB:X64058, and SP:P28762; identified by sequence similarity; curli production protein CsgG complement(3938975..3939823) Pseudomonas putida KT2440 1046442 NP_745610.1 CDS PP_3473 NC_002947.3 3939858 3940271 R similar to SP:O54292, GB:X64058, and SP:P28762; identified by sequence similarity; curli fiber protein CsgF complement(3939858..3940271) Pseudomonas putida KT2440 1045924 NP_745611.1 CDS PP_3474 NC_002947.3 3940268 3940669 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE complement(3940268..3940669) Pseudomonas putida KT2440 1046433 NP_745612.1 CDS PP_3475 NC_002947.3 3940666 3941196 R hypothetical protein complement(3940666..3941196) Pseudomonas putida KT2440 1046430 NP_745613.1 CDS PP_3476 NC_002947.3 3941168 3941554 R similar to GP:5442041, and GP:17430939; identified by sequence similarity; type II secretion system protein G complement(3941168..3941554) Pseudomonas putida KT2440 1046439 NP_745614.1 CDS PP_3477 NC_002947.3 3941548 3942027 R identified by match to TIGR protein family HMM TIGR01710; hypothetical protein complement(3941548..3942027) Pseudomonas putida KT2440 1046440 NP_745615.1 CDS PP_3478 NC_002947.3 3942024 3943889 R similar to GB:L27670, GB:L27671, GB:S78852, GB:S78853, PID:511641, and PID:511643; identified by sequence similarity; type II and III secretion system protein complement(3942024..3943889) Pseudomonas putida KT2440 1046429 NP_745616.1 CDS PP_3479 NC_002947.3 3943877 3944410 D hypothetical protein 3943877..3944410 Pseudomonas putida KT2440 1046488 NP_745617.1 CDS PP_3480 NC_002947.3 3944392 3944955 R hypothetical protein complement(3944392..3944955) Pseudomonas putida KT2440 1045291 NP_745618.1 CDS PP_3481 NC_002947.3 3944942 3945484 R hypothetical protein complement(3944942..3945484) Pseudomonas putida KT2440 1046436 NP_745619.1 CDS PP_3482 NC_002947.3 3945486 3946295 R hypothetical protein complement(3945486..3946295) Pseudomonas putida KT2440 1046464 NP_745620.1 CDS PP_3483 NC_002947.3 3946249 3948045 R similar to GB:U08434, and PID:487441; identified by sequence similarity; type II secretion system protein E complement(3946249..3948045) Pseudomonas putida KT2440 1046425 NP_745621.1 CDS PP_3484 NC_002947.3 3948106 3948636 R identified by match to PFAM protein family HMM PF00072; response regulator receiver protein complement(3948106..3948636) Pseudomonas putida KT2440 1046321 NP_745622.1 CDS PP_3485 NC_002947.3 3948889 3949530 R similar to SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; hypothetical protein complement(3948889..3949530) Pseudomonas putida KT2440 1046431 NP_745623.1 CDS PP_3486 NC_002947.3 3949543 3951222 R similar to GP:4704216; identified by sequence similarity; cytochrome c complement(3949543..3951222) Pseudomonas putida KT2440 1046515 NP_745624.1 CDS PP_3487 NC_002947.3 3951228 3951893 R identified by match to PFAM protein family HMM PF02630; electron transport protein SCO1/SenC complement(3951228..3951893) Pseudomonas putida KT2440 1046428 NP_745625.1 CDS PP_3488 NC_002947.3 3951890 3952546 R identified by match to PFAM protein family HMM PF02630; electron transport protein SCO1/SenC complement(3951890..3952546) Pseudomonas putida KT2440 1046481 NP_745626.1 CDS PP_3489 NC_002947.3 3952501 3954438 D identified by match to PFAM protein family HMM PF01087; hypothetical protein 3952501..3954438 Pseudomonas putida KT2440 1046514 NP_745627.1 CDS PP_3490 NC_002947.3 3954538 3960450 R similar to GB:M60922, PID:793910, GB:M60922, and PID:793910; identified by sequence similarity; hypothetical protein complement(3954538..3960450) Pseudomonas putida KT2440 1046458 NP_745628.1 CDS PP_3491 NC_002947.3 3960710 3961783 D similar to GP:2228238, and GP:11138233; identified by sequence similarity; enoly-coenzyme A hydratase/isomerase 3960710..3961783 Pseudomonas putida KT2440 1046422 NP_745629.1 CDS acdA NC_002947.3 3961800 3962951 D similar to SP:P45857; identified by sequence similarity; acyl-CoA dehydrogenase 3961800..3962951 Pseudomonas putida KT2440 1046280 NP_745630.1 CDS PP_3493 NC_002947.3 3963068 3964000 R similar to GP:9945991; identified by sequence similarity; LysR family transcriptional regulator complement(3963068..3964000) Pseudomonas putida KT2440 1041611 NP_745631.1 CDS PP_3494 NC_002947.3 3964120 3964380 D hypothetical protein 3964120..3964380 Pseudomonas putida KT2440 1045591 NP_745632.1 CDS PP_3495 NC_002947.3 3964382 3965074 R similar to GP:1813343, and GP:10173995; identified by sequence similarity; hypothetical protein complement(3964382..3965074) Pseudomonas putida KT2440 1045588 NP_745633.1 CDS PP_3496 NC_002947.3 3965193 3965591 D similar to GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, PID:1789205, GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, and PID:1789205; identified by sequence similarity; endoribonuclease L-PSP 3965193..3965591 Pseudomonas putida KT2440 1046421 NP_745634.1 CDS PP_3497 NC_002947.3 3965805 3967805 D similar to SP:P76104; identified by sequence similarity; U32 family peptidase 3965805..3967805 Pseudomonas putida KT2440 1046418 NP_745635.1 CDS PP_3498 NC_002947.3 3967990 3969048 D similar to GB:X66899, GB:X72990, GB:X72991, GB:X72992, GB:X72993, GB:X72994, GB:X72995, GB:X72996, GB:X72997, GB:X72998, GB:X72999, GB:X73000, GB:X73001, GB:X73002, GB:X73003, GB:X73004, SP:Q01844, PID:1572086, PID:1666068, PID:31280, and PID:825654; identified by sequence similarity; ISPpu11, transposase 3967990..3969048 Pseudomonas putida KT2440 1046420 NP_745636.1 CDS PP_3499 NC_002947.3 3969363 3969683 D similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 3969363..3969683 Pseudomonas putida KT2440 1046417 NP_745637.1 CDS PP_3500 NC_002947.3 3969680 3970015 D similar to GP:4928612, and GP:4928612; identified by sequence similarity; ISPpu14, transposase Orf2 3969680..3970015 Pseudomonas putida KT2440 1045970 NP_745638.1 CDS PP_3501 NC_002947.3 3970079 3971614 D similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 3970079..3971614 Pseudomonas putida KT2440 1043336 NP_745639.1 CDS PP_3502 NC_002947.3 3971994 3972959 D similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 3971994..3972959 Pseudomonas putida KT2440 1046520 NP_745640.1 CDS PP_3503 NC_002947.3 3973144 3974469 R identified by match to TIGR protein family HMM TIGR01199; Fis family transcriptional regulator complement(3973144..3974469) Pseudomonas putida KT2440 1046185 NP_745641.1 CDS PP_3504 NC_002947.3 3974810 3975076 D similar to GP:9947840, and GP:9947840; identified by sequence similarity; hypothetical protein 3974810..3975076 Pseudomonas putida KT2440 1046414 NP_745642.1 CDS PP_3505 NC_002947.3 3975183 3975773 R similar to GP:9949037; identified by sequence similarity; hypothetical protein complement(3975183..3975773) Pseudomonas putida KT2440 1046411 NP_745643.1 CDS PP_3506 NC_002947.3 3975851 3976864 R similar to SP:P26239; identified by sequence similarity; magnesium chelatase complement(3975851..3976864) Pseudomonas putida KT2440 1046408 NP_745644.1 CDS cobN NC_002947.3 3976866 3980627 R with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN complement(3976866..3980627) Pseudomonas putida KT2440 1045741 NP_745645.1 CDS cobW NC_002947.3 3980631 3981698 R similar to SP:P29937; identified by sequence similarity; cobalamin biosynthesis protein CobW complement(3980631..3981698) Pseudomonas putida KT2440 1046508 NP_745646.1 CDS PP_3509 NC_002947.3 3982105 3982482 D identified by match to PFAM protein family HMM PF00903; glyoxalase 3982105..3982482 Pseudomonas putida KT2440 1046409 NP_745647.1 CDS PP_3510 NC_002947.3 3982479 3982838 D hypothetical protein 3982479..3982838 Pseudomonas putida KT2440 1044876 NP_745648.1 CDS ilvE NC_002947.3 3982984 3984003 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3982984..3984003 Pseudomonas putida KT2440 1046413 NP_745649.1 CDS PP_3512 NC_002947.3 3984193 3984633 R similar to GP:9948970, and GP:9948970; identified by sequence similarity; transmembrane pair domain-containing protein complement(3984193..3984633) Pseudomonas putida KT2440 1046412 NP_745650.1 CDS PP_3513 NC_002947.3 3984714 3985568 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 3984714..3985568 Pseudomonas putida KT2440 1046402 NP_745651.1 CDS hyuB NC_002947.3 3985721 3987466 D similar to GB:L04303, GB:L16991, SP:P23919, and PID:291900; identified by sequence similarity; hydantoinase B/oxoprolinase 3985721..3987466 Pseudomonas putida KT2440 1046061 NP_745652.1 CDS hyuA NC_002947.3 3987480 3989564 D similar to GP:2665710, GB:J00269, GB:L42575, GB:L42576, GB:L42577, GB:L42578, GB:L42579, GB:L42580, GB:L42581, GB:L42582, GB:L42583, GB:J00269, GB:L42603, GB:L42604, GB:L42605, GB:L42606, GB:L42607, GB:L42608, GB:L42609, GB:L42610, GB:L42602, SP:P02538, SP:P04259, SP:P48666, SP:P48667, SP:P48668, SP:P48669, PID:1335192, PID:34069, PID:386847, PID:908779, PID:908790, PID:908801, PID:908803, PID:908805, and PID:914833; identified by sequence similarity; 5-oxoprolinase 3987480..3989564 Pseudomonas putida KT2440 1046319 NP_745653.1 CDS PP_3516 NC_002947.3 3989713 3990669 D similar to GP:8218179; identified by sequence similarity; AraC family transcriptional regulator 3989713..3990669 Pseudomonas putida KT2440 1046239 NP_745654.1 CDS PP_3517 NC_002947.3 3990730 3991623 R hypothetical protein complement(3990730..3991623) Pseudomonas putida KT2440 1046407 NP_745655.1 CDS PP_3518 NC_002947.3 3991620 3993065 R similar to GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, PID:576683, GB:L10126, GB:L31848, SP:P36896, PID:338215, PID:555934, PID:576681, PID:576682, and PID:576683; identified by sequence similarity; hypothetical protein complement(3991620..3993065) Pseudomonas putida KT2440 1046406 NP_745656.1 CDS PP_3519 NC_002947.3 3993311 3993562 D lipoprotein 3993311..3993562 Pseudomonas putida KT2440 1046201 NP_745657.1 CDS PP_3520 NC_002947.3 3993644 3994363 D similar to GP:9947023; identified by sequence similarity; hypothetical protein 3993644..3994363 Pseudomonas putida KT2440 1046309 NP_745658.1 CDS PP_3521 NC_002947.3 3994360 3995232 R identified by match to PFAM protein family HMM PF00892; hypothetical protein complement(3994360..3995232) Pseudomonas putida KT2440 1046314 NP_745659.1 CDS PP_3522 NC_002947.3 3995382 3995804 R similar to GP:10175707, GB:M77142, and SP:P31483; identified by sequence similarity; endoribonuclease L-PSP complement(3995382..3995804) Pseudomonas putida KT2440 1046404 NP_745660.1 CDS PP_3523 NC_002947.3 3995963 3996319 D hypothetical protein 3995963..3996319 Pseudomonas putida KT2440 1046253 NP_745661.1 CDS PP_3524 NC_002947.3 3996364 3996696 R hypothetical protein complement(3996364..3996696) Pseudomonas putida KT2440 1046306 NP_745662.1 CDS PP_3525 NC_002947.3 3996680 3997159 R similar to GP:9950776, and GP:9950776; identified by sequence similarity; hypothetical protein complement(3996680..3997159) Pseudomonas putida KT2440 1046303 NP_745663.1 CDS PP_3526 NC_002947.3 3997312 3998319 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 3997312..3998319 Pseudomonas putida KT2440 1046310 NP_745664.1 CDS PP_3527 NC_002947.3 3998358 3999041 R identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator complement(3998358..3999041) Pseudomonas putida KT2440 1046509 NP_745665.1 CDS PP_3528 NC_002947.3 3999313 4000299 D similar to GP:3420605; identified by sequence similarity; aliphatic sulfonate ABC transporter substrate-binding protein 3999313..4000299 Pseudomonas putida KT2440 1046302 NP_745666.1 CDS PP_3529 NC_002947.3 4000316 4001680 D monooxygenase 4000316..4001680 Pseudomonas putida KT2440 1046311 NP_745667.1 CDS PP_3530 NC_002947.3 4001814 4002650 D similar to GP:9947061, and GP:9947061; identified by sequence similarity; hypothetical protein 4001814..4002650 Pseudomonas putida KT2440 1046307 NP_745668.1 CDS PP_3531 NC_002947.3 4002740 4003339 D similar to GP:9947542; identified by sequence similarity; lipid-binding START domain-containing protein 4002740..4003339 Pseudomonas putida KT2440 1046305 NP_745669.1 CDS PP_3532 NC_002947.3 4003422 4003844 R similar to GP:3128284; identified by sequence similarity; AsnC family transcriptional regulator complement(4003422..4003844) Pseudomonas putida KT2440 1045576 NP_745670.1 CDS PP_3533 NC_002947.3 4004032 4005084 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 4004032..4005084 Pseudomonas putida KT2440 1046312 NP_745671.1 CDS PP_3534 NC_002947.3 4005156 4006037 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(4005156..4006037) Pseudomonas putida KT2440 1046478 NP_745672.1 CDS ggt-1 NC_002947.3 4006082 4007872 R similar to GB:X62083, GB:M80613, SP:P25440, PID:1370115, PID:182769, PID:2181873, PID:2181875, PID:31472, and PID:577293; identified by sequence similarity; gamma-glutamyltransferase complement(4006082..4007872) Pseudomonas putida KT2440 1045350 NP_745673.1 CDS PP_3536 NC_002947.3 4008079 4009167 R hypothetical protein complement(4008079..4009167) Pseudomonas putida KT2440 1046463 NP_745674.1 CDS pobA NC_002947.3 4009429 4010616 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(4009429..4010616) Pseudomonas putida KT2440 1045564 NP_745675.1 CDS pobR NC_002947.3 4010790 4011668 D similar to GP:6682325, and GP:6682325; identified by sequence similarity; AraC family transcriptional regulator 4010790..4011668 Pseudomonas putida KT2440 1046313 NP_745676.1 CDS PP_3539 NC_002947.3 4011744 4012142 D identified by match to PFAM protein family HMM PF00376; transcriptional regulator 4011744..4012142 Pseudomonas putida KT2440 1046369 NP_745677.1 CDS mvaB NC_002947.3 4012162 4013061 D catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 4012162..4013061 Pseudomonas putida KT2440 1045560 NP_745678.1 CDS PP_3541 NC_002947.3 4013594 4014112 R similar to GP:5508829; identified by sequence similarity; Mg2+ transporter complement(4013594..4014112) Pseudomonas putida KT2440 1045375 NP_745679.1 CDS PP_3542 NC_002947.3 4014281 4014520 D similar to GP:9948025, and GP:9948025; identified by sequence similarity; hypothetical protein 4014281..4014520 Pseudomonas putida KT2440 1045561 NP_745680.1 CDS PP_3543 NC_002947.3 4014642 4016045 D similar to GB:X69699, SP:Q06710, PID:307321, and PID:553607; identified by sequence similarity; (Fe-S)-binding protein 4014642..4016045 Pseudomonas putida KT2440 1045563 NP_745681.1 CDS PP_3544 NC_002947.3 4016096 4017505 D identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4016096..4017505 Pseudomonas putida KT2440 1045565 NP_745682.1 CDS PP_3545 NC_002947.3 4017563 4019224 D similar to GP:4376185; identified by sequence similarity; PAS/PAC sensor hybrid histidine kinase 4017563..4019224 Pseudomonas putida KT2440 1045374 NP_745683.1 CDS PP_3546 NC_002947.3 4019287 4021353 D similar to GP:5052340; identified by sequence similarity; PAS/PAC sensor hybrid histidine kinase 4019287..4021353 Pseudomonas putida KT2440 1045377 NP_745684.1 CDS PP_3547 NC_002947.3 4021361 4022107 R identified by match to TIGR protein family HMM TIGR01500; short chain dehydrogenase/reductase oxidoreductase complement(4021361..4022107) Pseudomonas putida KT2440 1045378 NP_745685.1 CDS PP_3548 NC_002947.3 4022970 4024505 R similar to GB:M80629, and PID:180492; identified by sequence similarity; EmrB/QacA family drug resistance transporter complement(4022970..4024505) Pseudomonas putida KT2440 1045281 NP_745686.1 CDS emrA NC_002947.3 4024502 4025695 R identified by match to TIGR protein family HMM TIGR01730; secretion protein HlyD family protein complement(4024502..4025695) Pseudomonas putida KT2440 1046243 NP_745687.1 CDS PP_3550 NC_002947.3 4025726 4026199 R identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator complement(4025726..4026199) Pseudomonas putida KT2440 1046242 NP_745688.1 CDS PP_3551 NC_002947.3 4026378 4027010 R identified by match to PFAM protein family HMM PF00072; LuxR family transcriptional regulator complement(4026378..4027010) Pseudomonas putida KT2440 1046236 NP_745689.1 CDS PP_3552 NC_002947.3 4027020 4028426 R identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor signal transduction histidine kinase complement(4027020..4028426) Pseudomonas putida KT2440 1045592 NP_745690.1 CDS PP_3553 NC_002947.3 4028620 4030242 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4028620..4030242 Pseudomonas putida KT2440 1046233 NP_745691.1 CDS PP_3554 NC_002947.3 4030335 4032104 D identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 4030335..4032104 Pseudomonas putida KT2440 1046234 NP_745692.1 CDS PP_3555 NC_002947.3 4032360 4033367 D similar to GP:9948429; identified by sequence similarity; FecR anti-FecI sigma factor 4032360..4033367 Pseudomonas putida KT2440 1045590 NP_745693.1 CDS PP_3556 NC_002947.3 4033381 4034700 R identified by match to PFAM protein family HMM PF04172; Na+/H+ antiporter NhaC complement(4033381..4034700) Pseudomonas putida KT2440 1045593 NP_745694.1 CDS PP_3557 NC_002947.3 4034947 4037091 D identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer 4034947..4037091 Pseudomonas putida KT2440 1045201 NP_745695.1 CDS PP_3558 NC_002947.3 4037186 4038202 D identified by match to PFAM protein family HMM PF04069; glycine betaine ABC transporter substrate-binding protein 4037186..4038202 Pseudomonas putida KT2440 1045582 NP_745696.1 CDS PP_3559 NC_002947.3 4038148 4039047 D identified by match to TIGR protein family HMM TIGR01183; binding-protein-dependent transport system inner membrane protein 4038148..4039047 Pseudomonas putida KT2440 1045571 NP_745697.1 CDS PP_3560 NC_002947.3 4039141 4040004 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4039141..4040004 Pseudomonas putida KT2440 1046277 NP_745698.1 CDS PP_3561 NC_002947.3 4040110 4041057 D similar to GP:9951798; identified by sequence similarity; auxin efflux carrier 4040110..4041057 Pseudomonas putida KT2440 1045585 NP_745699.1 CDS PP_3562 NC_002947.3 4041050 4041703 D hypothetical protein 4041050..4041703 Pseudomonas putida KT2440 1045581 NP_745700.1 CDS PP_3563 NC_002947.3 4041910 4042761 D similar to GP:9947059, and GP:9947059; identified by sequence similarity; hypothetical protein 4041910..4042761 Pseudomonas putida KT2440 1045583 NP_745701.1 CDS PP_3564 NC_002947.3 4042763 4043740 R similar to GP:9951713; identified by sequence similarity; AraC family transcriptional regulator complement(4042763..4043740) Pseudomonas putida KT2440 1046279 NP_745702.1 CDS PP_3565 NC_002947.3 4043845 4044456 D similar to SP:P27847; identified by sequence similarity; amino acid transporter LysE 4043845..4044456 Pseudomonas putida KT2440 1046333 NP_745703.1 CDS PP_3566 NC_002947.3 4044505 4045704 R identified by match to PFAM protein family HMM PF00083; major facilitator family transporter complement(4044505..4045704) Pseudomonas putida KT2440 1046332 NP_745704.1 CDS PP_3567 NC_002947.3 4045811 4046716 R similar to GP:3169721; identified by sequence similarity; LysR family transcriptional regulator complement(4045811..4046716) Pseudomonas putida KT2440 1046226 NP_745705.1 CDS PP_3568 NC_002947.3 4046834 4047184 D similar to GB:S73775, SP:P31415, GB:S73775, and SP:P31415; identified by sequence similarity; hypothetical protein 4046834..4047184 Pseudomonas putida KT2440 1045569 NP_745706.1 CDS PP_3569 NC_002947.3 4047447 4049864 D similar to SP:Q9XD78; identified by sequence similarity; quinate dehydrogenase 4047447..4049864 Pseudomonas putida KT2440 1045587 NP_745707.1 CDS PP_3570 NC_002947.3 4050043 4051233 D similar to GB:M26683, GB:X60001, GB:S71513, GB:X14768, GB:M37719, GB:M24545, GB:M30816, GB:M31625, GB:M31626, GB:M28223, GB:M28224, GB:M28225, GB:M28226, GB:D26087, and SP:P13500; identified by sequence similarity; carbohydrate-selective porin OprB 4050043..4051233 Pseudomonas putida KT2440 1046336 NP_745708.1 CDS PP_3571 NC_002947.3 4051276 4052451 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(4051276..4052451) Pseudomonas putida KT2440 1046228 NP_745709.1 CDS PP_3572 NC_002947.3 4052429 4053106 R identified by match to TIGR protein family HMM TIGR01662; hypothetical protein complement(4052429..4053106) Pseudomonas putida KT2440 1046172 NP_745710.1 CDS PP_3573 NC_002947.3 4053424 4054743 D identified by match to PFAM protein family HMM PF00070; monooxygenase 4053424..4054743 Pseudomonas putida KT2440 1042707 NP_745711.1 CDS PP_3574 NC_002947.3 4054767 4055159 D similar to GB:U05875, GB:U05877, GB:X88209, SP:P38484, PID:1669506, PID:463550, and PID:463552; identified by sequence similarity; endoribonuclease L-PSP 4054767..4055159 Pseudomonas putida KT2440 1045182 NP_745712.1 CDS PP_3575 NC_002947.3 4055253 4057658 R identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor complement(4055253..4057658) Pseudomonas putida KT2440 1046354 NP_745713.1 CDS PP_3576 NC_002947.3 4057726 4058670 R similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; FecR anti-FecI sigma factor complement(4057726..4058670) Pseudomonas putida KT2440 1046225 NP_745714.1 CDS PP_3577 NC_002947.3 4058667 4059179 R identified by match to PFAM protein family HMM PF00776; ECF subfamily RNA polymerase sigma factor complement(4058667..4059179) Pseudomonas putida KT2440 1046334 NP_745715.1 CDS PP_3578 NC_002947.3 4059258 4060895 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(4059258..4060895) Pseudomonas putida KT2440 1046356 NP_745716.1 CDS PP_3579 NC_002947.3 4061069 4061716 D similar to GB:L12006, SP:Q05596, PID:154435, GB:L12006, SP:Q05596, and PID:154435; identified by sequence similarity; hypothetical protein 4061069..4061716 Pseudomonas putida KT2440 1046324 NP_745717.1 CDS PP_3580 NC_002947.3 4061946 4062251 D hypothetical protein 4061946..4062251 Pseudomonas putida KT2440 1046281 NP_745718.1 CDS PP_3581 NC_002947.3 4062248 4064335 R similar to GP:9947703; identified by sequence similarity; diguanylate cyclase complement(4062248..4064335) Pseudomonas putida KT2440 1046230 NP_745719.1 CDS PP_3582 NC_002947.3 4064466 4065956 R identified by match to PFAM protein family HMM PF02321; RND efflux transporter complement(4064466..4065956) Pseudomonas putida KT2440 1046353 NP_745720.1 CDS PP_3583 NC_002947.3 4065953 4069060 R identified by match to TIGR protein family HMM TIGR00915; acriflavin resistance protein complement(4065953..4069060) Pseudomonas putida KT2440 1046361 NP_745721.1 CDS PP_3585 NC_002947.3 4072151 4073458 R identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(4072151..4073458) Pseudomonas putida KT2440 1046398 NP_745722.1 CDS PP_3586 NC_002947.3 4074082 4075410 R similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase complement(4074082..4075410) Pseudomonas putida KT2440 1046373 NP_745723.1 CDS tpx NC_002947.3 4075851 4076351 R similar to SP:P57669; identified by sequence similarity; redoxin domain-containing protein complement(4075851..4076351) Pseudomonas putida KT2440 1046360 NP_745724.1 CDS PP_3588 NC_002947.3 4076652 4077839 D similar to GP:474915; identified by sequence similarity; Bcr/CflA family multidrug resistance transporter 4076652..4077839 Pseudomonas putida KT2440 1046359 NP_745725.1 CDS sdaC NC_002947.3 4077912 4079192 R similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; aromatic amino acid ABC transporter permease complement(4077912..4079192) Pseudomonas putida KT2440 1046374 NP_745726.1 CDS tyrB-2 NC_002947.3 4079576 4080772 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(4079576..4080772) Pseudomonas putida KT2440 1045962 NP_745727.1 CDS PP_3591 NC_002947.3 4080935 4081933 R identified by match to PFAM protein family HMM PF02615; malate/L-lactate dehydrogenase complement(4080935..4081933) Pseudomonas putida KT2440 1046365 NP_745728.1 CDS PP_3592 NC_002947.3 4082052 4082975 D identified by match to PFAM protein family HMM PF01418; RpiR family transcriptional regulator 4082052..4082975 Pseudomonas putida KT2440 1046364 NP_745729.1 CDS PP_3593 NC_002947.3 4082998 4083750 D identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 4082998..4083750 Pseudomonas putida KT2440 1043915 NP_745730.1 CDS PP_3594 NC_002947.3 4083855 4084574 D identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit 4083855..4084574 Pseudomonas putida KT2440 1046385 NP_745731.1 CDS PP_3595 NC_002947.3 4084571 4085281 D similar to GB:X52425, SP:P24394, and PID:33834; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit 4084571..4085281 Pseudomonas putida KT2440 1046371 NP_745732.1 CDS PP_3596 NC_002947.3 4085298 4086542 D identified by match to PFAM protein family HMM PF01266; FAD dependent oxidoreductase 4085298..4086542 Pseudomonas putida KT2440 1046370 NP_745733.1 CDS PP_3597 NC_002947.3 4086565 4087347 D similar to GP:2961079; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 4086565..4087347 Pseudomonas putida KT2440 1046384 NP_745734.1 CDS PP_3598 NC_002947.3 4087773 4088582 D similar to SP:P76038; identified by sequence similarity; peptidase C26 4087773..4088582 Pseudomonas putida KT2440 1046443 NP_745735.1 CDS PP_3599 NC_002947.3 4088930 4089841 D catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 4088930..4089841 Pseudomonas putida KT2440 1046377 NP_745736.1 CDS PP_3600 NC_002947.3 4089946 4091310 D similar to SP:P31457, GB:M11953, GB:L10120, GB:X61441, PID:2218035, PID:2275585, PID:292779, PID:338868, PID:37450, PID:553696, PID:553702, PID:975610, and PID:975611; identified by sequence similarity; d-galactonate transporter 4089946..4091310 Pseudomonas putida KT2440 1046381 NP_745737.1 CDS PP_3601 NC_002947.3 4091388 4092941 D similar to GB:L07044, PID:975881, and PID:975883; identified by sequence similarity; D-galactarate dehydratase 4091388..4092941 Pseudomonas putida KT2440 1046232 NP_745738.1 CDS PP_3602 NC_002947.3 4093000 4094580 D identified by match to TIGR protein family HMM TIGR01722; ketoglutarate semialdehyde dehydrogenase 4093000..4094580 Pseudomonas putida KT2440 1046445 NP_745739.1 CDS PP_3603 NC_002947.3 4094715 4095479 R similar to GP:10174453; identified by sequence similarity; GntR family transcriptional regulator complement(4094715..4095479) Pseudomonas putida KT2440 1046383 NP_745740.1 CDS PP_3604 NC_002947.3 4096402 4096734 R hypothetical protein complement(4096402..4096734) Pseudomonas putida KT2440 1045686 NP_745741.1 CDS PP_3605 NC_002947.3 4096751 4097671 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(4096751..4097671) Pseudomonas putida KT2440 1046444 NP_745742.1 CDS qor-2 NC_002947.3 4097711 4098685 R identified by match to TIGR protein family HMM TIGR01751; quinone oxidoreductase complement(4097711..4098685) Pseudomonas putida KT2440 1045370 NP_745743.1 CDS PP_3607 NC_002947.3 4098799 4100013 R identified by match to PFAM protein family HMM PF04143; hypothetical protein complement(4098799..4100013) Pseudomonas putida KT2440 1046315 NP_745744.1 CDS PP_3608 NC_002947.3 4100123 4101052 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4100123..4101052 Pseudomonas putida KT2440 1046386 NP_745745.1 CDS PP_3609 NC_002947.3 4101053 4101583 R hypothetical protein complement(4101053..4101583) Pseudomonas putida KT2440 1046506 NP_745746.1 CDS PP_3610 NC_002947.3 4101748 4102512 D hypothetical protein 4101748..4102512 Pseudomonas putida KT2440 1042699 NP_745747.1 CDS PP_3611 NC_002947.3 4102660 4103241 R hypothetical protein complement(4102660..4103241) Pseudomonas putida KT2440 1046500 NP_745748.1 CDS PP_3612 NC_002947.3 4103278 4105590 D similar to GP:5712714; identified by sequence similarity; TonB-dependent siderophore receptor 4103278..4105590 Pseudomonas putida KT2440 1041989 NP_745749.1 CDS PP_3613 NC_002947.3 4105675 4106967 R similar to GP:9948458, GB:U10362, and PID:505652; identified by sequence similarity; L-sorbosone dehydrogenase complement(4105675..4106967) Pseudomonas putida KT2440 1046389 NP_745750.1 CDS PP_3614 NC_002947.3 4106964 4107392 R identified by match to PFAM protein family HMM PF01127; hypothetical protein complement(4106964..4107392) Pseudomonas putida KT2440 1045570 NP_745751.1 CDS PP_3615 NC_002947.3 4107456 4107842 D hypothetical protein 4107456..4107842 Pseudomonas putida KT2440 1046357 NP_745752.1 CDS PP_3616 NC_002947.3 4108175 4111165 D hypothetical protein 4108175..4111165 Pseudomonas putida KT2440 1045589 NP_745753.1 CDS PP_3617 NC_002947.3 4111168 4112064 D hypothetical protein 4111168..4112064 Pseudomonas putida KT2440 1046518 NP_745754.1 CDS PP_3618 NC_002947.3 4112214 4113107 D hypothetical protein 4112214..4113107 Pseudomonas putida KT2440 1046238 NP_745755.1 CDS PP_3619 NC_002947.3 4113353 4114249 D hypothetical protein 4113353..4114249 Pseudomonas putida KT2440 1046286 NP_745756.1 CDS PP_3620 NC_002947.3 4114395 4116581 R identified by match to TIGR protein family HMM TIGR00702; hypothetical protein complement(4114395..4116581) Pseudomonas putida KT2440 1046368 NP_745757.1 CDS PP_3621 NC_002947.3 4116852 4117307 D similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; (2Fe-2S)-binding protein 4116852..4117307 Pseudomonas putida KT2440 1041620 NP_745758.1 CDS PP_3622 NC_002947.3 4117307 4119562 D similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; isoquinoline 1-oxidoreductase subunit beta 4117307..4119562 Pseudomonas putida KT2440 1046460 NP_745759.1 CDS PP_3623 NC_002947.3 4119581 4120924 D similar to GB:J03464, GB:Y00724, GB:X55525, GB:X03892, GB:J00114, GB:K02568, GB:M21353, GB:M21671, GB:M28985, GB:K02046, GB:M22816, GB:S98904, GB:M64229, GB:M22817, GB:M35391, GB:M21189, GB:K01078, GB:M31886, GB:S41101, GB:S59218, GB:S59211, GB:V00503, GB:X02488, SP:P08123, PID:1418930, PID:179596, PID:179603, PID:179634, PID:180394, PID:180882, PID:189685, PID:190305, PID:2078468, PID:2388555, PID:30023, PID:30102, PID:553606, and PID:825646; identified by sequence similarity; gluconate 2-dehydrogenase 4119581..4120924 Pseudomonas putida KT2440 1046487 NP_745760.1 CDS PP_3624 NC_002947.3 4120994 4121782 R identified by match to TIGR protein family HMM TIGR01096; hypothetical protein complement(4120994..4121782) Pseudomonas putida KT2440 1046366 NP_745761.1 CDS PP_3625 NC_002947.3 4121990 4122631 R identified by match to PFAM protein family HMM PF01810; amino acid transporter LysE complement(4121990..4122631) Pseudomonas putida KT2440 1046326 NP_745762.1 CDS PP_3626 NC_002947.3 4122682 4122882 R similar to GP:9949921; identified by sequence similarity; hypothetical protein complement(4122682..4122882) Pseudomonas putida KT2440 1045438 NP_745763.1 CDS PP_3627 NC_002947.3 4122891 4123208 R hypothetical protein complement(4122891..4123208) Pseudomonas putida KT2440 1046182 NP_745764.1 CDS PP_3628 NC_002947.3 4123522 4125267 D similar to GP:4584486; identified by sequence similarity; choline/carnitine/betaine transporter 4123522..4125267 Pseudomonas putida KT2440 1046415 NP_745765.1 CDS PP_3629 NC_002947.3 4125348 4125827 R similar to GP:9948797, and GP:9948797; identified by sequence similarity; 3-demethylubiquinone-9 3-methyltransferase complement(4125348..4125827) Pseudomonas putida KT2440 1045222 NP_745766.1 CDS PP_3630 NC_002947.3 4126013 4127356 R similar to GP:2645844; identified by sequence similarity; porin complement(4126013..4127356) Pseudomonas putida KT2440 1046456 NP_745767.1 CDS PP_3631 NC_002947.3 4127628 4128278 D similar to GP:9950361; identified by sequence similarity; hypothetical protein 4127628..4128278 Pseudomonas putida KT2440 1045712 NP_745768.1 CDS PP_3632 NC_002947.3 4128345 4129223 R similar to GP:6580639; identified by sequence similarity; LysR family transcriptional regulator complement(4128345..4129223) Pseudomonas putida KT2440 1045920 NP_745769.1 CDS argC NC_002947.3 4129380 4130321 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4129380..4130321 Pseudomonas putida KT2440 1046203 NP_745770.1 CDS PP_3634 NC_002947.3 4130299 4131084 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 4130299..4131084 Pseudomonas putida KT2440 1046485 NP_745771.1 CDS PP_3635 NC_002947.3 4131196 4131951 R similar to GP:9948362, and GP:5823450; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein complement(4131196..4131951) Pseudomonas putida KT2440 1046495 NP_745772.1 CDS PP_3636 NC_002947.3 4131951 4133156 R similar to GP:5823449; identified by sequence similarity; sulfonate ABC transporter substrate-binding protein complement(4131951..4133156) Pseudomonas putida KT2440 1046492 NP_745773.1 CDS PP_3637 NC_002947.3 4133143 4133964 R similar to GP:5823448; identified by sequence similarity; sulfonate ABC transporter ATP-binding protein complement(4133143..4133964) Pseudomonas putida KT2440 1045325 NP_745774.1 CDS PP_3638 NC_002947.3 4133961 4135025 R similar to GP:5823447; identified by sequence similarity; acyl-CoA dehydrogenase complement(4133961..4135025) Pseudomonas putida KT2440 1046397 NP_745775.1 CDS PP_3639 NC_002947.3 4135125 4135784 R identified by match to TIGR protein family HMM TIGR00778; alkylhydroperoxidase complement(4135125..4135784) Pseudomonas putida KT2440 1046468 NP_745776.1 CDS PP_3640 NC_002947.3 4135788 4136708 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 4135788..4136708 Pseudomonas putida KT2440 1046471 NP_745777.1 CDS PP_3641 NC_002947.3 4136778 4138181 R identified by match to PFAM protein family HMM PF02133; cytosine/purines uracil thiamine allantoin permease complement(4136778..4138181) Pseudomonas putida KT2440 1042539 NP_745778.1 CDS PP_3642 NC_002947.3 4138275 4138424 D hypothetical protein 4138275..4138424 Pseudomonas putida KT2440 1044208 NP_745779.1 CDS PP_3643 NC_002947.3 4138498 4138983 D identified by match to PFAM protein family HMM PF01613; oxidoreductase 4138498..4138983 Pseudomonas putida KT2440 1046437 NP_745780.1 CDS PP_3644 NC_002947.3 4139064 4140104 D similar to SP:P24376, GB:X55648, and PID:43525; identified by sequence similarity; luciferase 4139064..4140104 Pseudomonas putida KT2440 1046380 NP_745781.1 CDS PP_3645 NC_002947.3 4140989 4141867 D similar to GP:2935027; identified by sequence similarity; alpha/beta hydrolase 4140989..4141867 Pseudomonas putida KT2440 1046466 NP_745782.1 CDS PP_3646 NC_002947.3 4141864 4143345 D identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase 4141864..4143345 Pseudomonas putida KT2440 1046204 NP_745783.1 CDS PP_3647 NC_002947.3 4143358 4143843 D similar to GP:3059199; identified by sequence similarity; oxidoreductase 4143358..4143843 Pseudomonas putida KT2440 1046391 NP_745784.1 CDS PP_3648 NC_002947.3 4143966 4144355 D identified by match to PFAM protein family HMM PF02627; carboxymuconolactone decarboxylase 4143966..4144355 Pseudomonas putida KT2440 1046298 NP_745785.1 CDS PP_3649 NC_002947.3 4144444 4145196 D similar to GB:M13923, SP:P06185, GB:X52093, and PID:154256; identified by sequence similarity; GntR family transcriptional regulator 4144444..4145196 Pseudomonas putida KT2440 1046489 NP_745786.1 CDS PP_3650 NC_002947.3 4145199 4145762 D identified by match to TIGR protein family HMM TIGR00586; NUDIX hydrolase 4145199..4145762 Pseudomonas putida KT2440 1046227 NP_745787.1 CDS PP_3651 NC_002947.3 4145914 4148097 D identified by match to PFAM protein family HMM PF02518; GAF sensor hybrid histidine kinase 4145914..4148097 Pseudomonas putida KT2440 1046245 NP_745788.1 CDS PP_3652 NC_002947.3 4148120 4148752 R similar to GB:M31308, SP:P15922, and PID:148447; identified by sequence similarity; amino acid transporter LysE complement(4148120..4148752) Pseudomonas putida KT2440 1046493 NP_745789.1 CDS PP_3653 NC_002947.3 4148819 4149433 R similar to GP:4585594; identified by sequence similarity; amino acid transporter LysE complement(4148819..4149433) Pseudomonas putida KT2440 1046323 NP_745790.1 CDS PP_3654 NC_002947.3 4149545 4149997 D similar to GP:3980226; identified by sequence similarity; AsnC family transcriptional regulator 4149545..4149997 Pseudomonas putida KT2440 1043427 NP_745791.1 CDS PP_3655 NC_002947.3 4150394 4151806 D identified by match to PFAM protein family HMM PF04171; cytosine/purines uracil thiamine allantoin permease 4150394..4151806 Pseudomonas putida KT2440 1046405 NP_745792.1 CDS PP_3656 NC_002947.3 4151957 4153219 R Appears to be in an operon of genes involved in the import and degradation of an aromatic compound.; identified by match to PFAM protein family HMM PF03573; aromatic compound-specific porin complement(4151957..4153219) Pseudomonas putida KT2440 1042580 NP_745793.1 CDS PP_3657 NC_002947.3 4153380 4154054 R similar to GP:9885815; identified by sequence similarity; nitrobenzoate reductase complement(4153380..4154054) Pseudomonas putida KT2440 1046392 NP_745794.1 CDS PP_3658 NC_002947.3 4154137 4155489 R similar to GP:7542440; identified by sequence similarity; aromatic compound MFS transporter complement(4154137..4155489) Pseudomonas putida KT2440 1046282 NP_745795.1 CDS PP_3659 NC_002947.3 4155761 4157014 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(4155761..4157014) Pseudomonas putida KT2440 1046169 NP_745796.1 CDS PP_3660 NC_002947.3 4156987 4157874 R similar to GB:X57351, GB:X02490, SP:Q01628, SP:Q01629, and PID:23396; identified by sequence similarity; LysR family transcriptional regulator complement(4156987..4157874) Pseudomonas putida KT2440 1046196 NP_745797.1 CDS PP_3661 NC_002947.3 4157987 4159048 D identified by match to PFAM protein family HMM PF03601; hypothetical protein 4157987..4159048 Pseudomonas putida KT2440 1046202 NP_745798.1 CDS PP_3662 NC_002947.3 4159257 4160630 D similar to GP:9950318; identified by sequence similarity; decarboxylase 4159257..4160630 Pseudomonas putida KT2440 1046470 NP_745799.1 CDS PP_3663 NC_002947.3 4160751 4162052 R similar to GB:X67697, SP:Q08648, and PID:395921; identified by sequence similarity; diguanylate cyclase complement(4160751..4162052) Pseudomonas putida KT2440 1044765 NP_745800.1 CDS pssA NC_002947.3 4162129 4163457 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(4162129..4163457) Pseudomonas putida KT2440 1046197 NP_745801.1 CDS PP_3665 NC_002947.3 4163441 4164646 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 4163441..4164646 Pseudomonas putida KT2440 1046199 NP_745802.1 CDS PP_3666 NC_002947.3 4164763 4166097 R similar to GP:9716209; identified by sequence similarity; major facilitator superfamily transporter complement(4164763..4166097) Pseudomonas putida KT2440 1046296 NP_745803.1 CDS PP_3667 NC_002947.3 4166260 4167471 R similar to GB:L08895, SP:Q06413, PID:292290, GB:L08895, SP:Q06413, and PID:292290; identified by sequence similarity; creatinase complement(4166260..4167471) Pseudomonas putida KT2440 1045383 NP_745804.1 CDS PP_3668 NC_002947.3 4167633 4169888 R similar to GP:12620402; identified by sequence similarity; catalase/peroxidase HPI complement(4167633..4169888) Pseudomonas putida KT2440 1045143 NP_745805.1 CDS PP_3669 NC_002947.3 4170275 4171180 D similar to GP:3646369; identified by sequence similarity; LysR family transcriptional regulator 4170275..4171180 Pseudomonas putida KT2440 1046198 NP_745806.1 CDS PP_3670 NC_002947.3 4171240 4172118 R identified by match to PFAM protein family HMM PF00892; hypothetical protein complement(4171240..4172118) Pseudomonas putida KT2440 1046396 NP_745807.1 CDS PP_3671 NC_002947.3 4172363 4173187 D identified by match to TIGR protein family HMM TIGR01293; aldo/keto reductase 4172363..4173187 Pseudomonas putida KT2440 1046399 NP_745808.1 CDS PP_3672 NC_002947.3 4173202 4173774 R similar to GP:14022500, SP:P24075, GB:X59956, and PID:48924; identified by sequence similarity; hypothetical protein complement(4173202..4173774) Pseudomonas putida KT2440 1046207 NP_745809.1 CDS PP_3675 NC_002947.3 4175034 4175186 D hypothetical protein 4175034..4175186 Pseudomonas putida KT2440 1046328 NP_745810.1 CDS PP_3676 NC_002947.3 4175316 4177427 D hypothetical protein 4175316..4177427 Pseudomonas putida KT2440 1046255 NP_745811.1 CDS PP_3677 NC_002947.3 4177424 4179610 D hypothetical protein 4177424..4179610 Pseudomonas putida KT2440 1046379 NP_745812.1 CDS PP_3678 NC_002947.3 4180132 4181595 D identified by match to PFAM protein family HMM PF00589; hypothetical protein 4180132..4181595 Pseudomonas putida KT2440 1045397 NP_745813.1 CDS PP_3679 NC_002947.3 4181658 4181981 R hypothetical protein complement(4181658..4181981) Pseudomonas putida KT2440 1046041 NP_745814.1 CDS PP_3680 NC_002947.3 4182219 4184222 D identified by match to PFAM protein family HMM PF02463; hypothetical protein 4182219..4184222 Pseudomonas putida KT2440 1046510 NP_745815.1 CDS PP_3681 NC_002947.3 4184219 4185877 D identified by match to PFAM protein family HMM PF00580; helicase 4184219..4185877 Pseudomonas putida KT2440 1046300 NP_745816.1 CDS PP_3682 NC_002947.3 4185928 4186080 D hypothetical protein 4185928..4186080 Pseudomonas putida KT2440 1046212 NP_745817.1 CDS PP_3683 NC_002947.3 4186650 4187891 D hypothetical protein 4186650..4187891 Pseudomonas putida KT2440 1046213 NP_745818.1 CDS PP_3684 NC_002947.3 4188101 4188400 D hypothetical protein 4188101..4188400 Pseudomonas putida KT2440 1046317 NP_745819.1 CDS PP_3685 NC_002947.3 4189760 4189942 D hypothetical protein 4189760..4189942 Pseudomonas putida KT2440 1046297 NP_745820.1 CDS PP_3686 NC_002947.3 4191774 4191944 R hypothetical protein complement(4191774..4191944) Pseudomonas putida KT2440 1045376 NP_745821.1 CDS PP_3688 NC_002947.3 4194971 4195669 R hypothetical protein complement(4194971..4195669) Pseudomonas putida KT2440 1046325 NP_745822.1 CDS PP_3689 NC_002947.3 4198162 4199169 D similar to SP:Q05528, GB:X62073, PID:48986, SP:Q05528, GB:X62073, and PID:48986; identified by sequence similarity; serine/threonine protein phosphatase 4198162..4199169 Pseudomonas putida KT2440 1046293 NP_745823.1 CDS PP_3690 NC_002947.3 4199711 4201033 R hypothetical protein complement(4199711..4201033) Pseudomonas putida KT2440 1046301 NP_745824.1 CDS PP_3691 NC_002947.3 4201148 4207771 R similar to SP:P17224, GB:X52284, PID:42514, SP:P22879, SP:P12834, PID:154521, and PID:48022; identified by sequence similarity; DNA helicase-like protein complement(4201148..4207771) Pseudomonas putida KT2440 1046263 NP_745825.1 CDS PP_3692 NC_002947.3 4208044 4210719 D hypothetical protein 4208044..4210719 Pseudomonas putida KT2440 1046477 NP_745826.1 CDS PP_3693 NC_002947.3 4211122 4211487 R transcriptional regulator MvaT, P16 subunit complement(4211122..4211487) Pseudomonas putida KT2440 1046372 NP_745827.1 CDS PP_3694 NC_002947.3 4211652 4212611 R hypothetical protein complement(4211652..4212611) Pseudomonas putida KT2440 1046395 NP_745828.1 CDS PP_3695 NC_002947.3 4212569 4213720 R hypothetical protein complement(4212569..4213720) Pseudomonas putida KT2440 1046320 NP_745829.1 CDS PP_3696 NC_002947.3 4213727 4214947 R hypothetical protein complement(4213727..4214947) Pseudomonas putida KT2440 1045116 NP_745830.1 CDS PP_3697 NC_002947.3 4214954 4217038 R identified by match to PFAM protein family HMM PF04097; hypothetical protein complement(4214954..4217038) Pseudomonas putida KT2440 1046294 NP_745831.1 CDS PP_3698 NC_002947.3 4217793 4219292 R hypothetical protein complement(4217793..4219292) Pseudomonas putida KT2440 1046511 NP_745832.1 CDS PP_3699 NC_002947.3 4219431 4221137 D identified by match to PFAM protein family HMM PF01118; hypothetical protein 4219431..4221137 Pseudomonas putida KT2440 1046329 NP_745833.1 CDS PP_3700 NC_002947.3 4221399 4222628 R hypothetical protein complement(4221399..4222628) Pseudomonas putida KT2440 1042624 NP_745834.1 CDS PP_3701 NC_002947.3 4222647 4222850 R hypothetical protein complement(4222647..4222850) Pseudomonas putida KT2440 1046291 NP_745835.1 CDS PP_3702 NC_002947.3 4222865 4223032 R hypothetical protein complement(4222865..4223032) Pseudomonas putida KT2440 1042826 NP_745836.1 CDS PP_3703 NC_002947.3 4223090 4223884 R hypothetical protein complement(4223090..4223884) Pseudomonas putida KT2440 1046060 NP_745837.1 CDS PP_3704 NC_002947.3 4224705 4224920 R hypothetical protein complement(4224705..4224920) Pseudomonas putida KT2440 1046290 NP_745838.1 CDS PP_3705 NC_002947.3 4224921 4226093 R hypothetical protein complement(4224921..4226093) Pseudomonas putida KT2440 1046322 NP_745839.1 CDS PP_3706 NC_002947.3 4226880 4227839 R similar to GP:7635977, and GP:6752313; identified by sequence similarity; hypothetical protein complement(4226880..4227839) Pseudomonas putida KT2440 1046446 NP_745840.1 CDS PP_3707 NC_002947.3 4228788 4230203 R hypothetical protein complement(4228788..4230203) Pseudomonas putida KT2440 1046358 NP_745841.1 CDS PP_3708 NC_002947.3 4230224 4231261 R hypothetical protein complement(4230224..4231261) Pseudomonas putida KT2440 1046179 NP_745842.1 CDS PP_3709 NC_002947.3 4231377 4231736 R hypothetical protein complement(4231377..4231736) Pseudomonas putida KT2440 1046210 NP_745843.1 CDS PP_3710 NC_002947.3 4232328 4232789 R hypothetical protein complement(4232328..4232789) Pseudomonas putida KT2440 1045395 NP_745844.1 CDS PP_3711 NC_002947.3 4233549 4235060 R identified by match to PFAM protein family HMM PF00990; sensory box protein complement(4233549..4235060) Pseudomonas putida KT2440 1046331 NP_745845.1 CDS PP_3712 NC_002947.3 4235222 4235716 R similar to GP:10173711, and GP:10173711; identified by sequence similarity; hypothetical protein complement(4235222..4235716) Pseudomonas putida KT2440 1041706 NP_745846.1 CDS catA NC_002947.3 4235833 4236768 R similar to GB:D16827, SP:P35346, PID:431095, PID:487684, GB:D16827, SP:P35346, PID:431095, and PID:487684; identified by sequence similarity; catechol 1,2-dioxygenase complement(4235833..4236768) Pseudomonas putida KT2440 1045930 NP_745847.1 CDS catC NC_002947.3 4236812 4237102 R similar to GP:2647940, and GP:2647940; identified by sequence similarity; muconolactone isomerase complement(4236812..4237102) Pseudomonas putida KT2440 1045925 NP_745848.1 CDS catB NC_002947.3 4237124 4238245 R similar to GP:1633162, and GP:1633162; identified by sequence similarity; muconate and chloromuconate cycloisomerase complement(4237124..4238245) Pseudomonas putida KT2440 1046512 NP_745849.1 CDS catR NC_002947.3 4238381 4239253 D similar to GB:X06233, GB:M21064, GB:A12031, GB:A12029, SP:P06702, PID:34771, PID:386958, PID:490104, PID:490108, PID:516621, GB:X06233, GB:M21064, GB:A12031, GB:A12029, SP:P06702, PID:34771, PID:386958, PID:490104, PID:490108, and PID:516621; identified by sequence similarity; LysR family transcriptional regulator 4238381..4239253 Pseudomonas putida KT2440 1046465 NP_745850.1 CDS PP_3717 NC_002947.3 4239386 4240285 R identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator complement(4239386..4240285) Pseudomonas putida KT2440 1046299 NP_745851.1 CDS PP_3718 NC_002947.3 4240282 4241694 R similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; hypothetical protein complement(4240282..4241694) Pseudomonas putida KT2440 1044768 NP_745852.1 CDS PP_3719 NC_002947.3 4241729 4242832 R similar to GP:9947357; identified by sequence similarity; polyamine ABC transporter substrate-binding protein complement(4241729..4242832) Pseudomonas putida KT2440 1045388 NP_745853.1 CDS PP_3720 NC_002947.3 4243026 4243733 R identified by match to PFAM protein family HMM PF02525; ribosyldihydronicotinamide dehydrogenase complement(4243026..4243733) Pseudomonas putida KT2440 1046486 NP_745854.1 CDS aspC NC_002947.3 4243826 4245016 R similar to GB:M31520, GB:U12202, SP:P16632, PID:337506, PID:517221, and PID:517222; identified by sequence similarity; aspartate aminotransferase complement(4243826..4245016) Pseudomonas putida KT2440 1046484 NP_745855.1 CDS alr NC_002947.3 4245041 4246270 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(4245041..4246270) Pseudomonas putida KT2440 1043924 NP_745856.1 CDS PP_3724 NC_002947.3 4247906 4250023 R similar to GP:5514636; identified by sequence similarity; acyl-CoA synthetase complement(4247906..4250023) Pseudomonas putida KT2440 1046476 NP_745857.1 CDS PP_3725 NC_002947.3 4250041 4251201 R identified by match to PFAM protein family HMM PF02770; acyl-CoA dehydrogenase complement(4250041..4251201) Pseudomonas putida KT2440 1045373 NP_745858.1 CDS PP_3726 NC_002947.3 4251235 4252029 R identified by match to PFAM protein family HMM PF00378; enoyl-CoA hydratase complement(4251235..4252029) Pseudomonas putida KT2440 1046767 NP_745859.1 CDS PP_3727 NC_002947.3 4252269 4253675 R identified by match to TIGR protein family HMM TIGR00913; amino acid transporter complement(4252269..4253675) Pseudomonas putida KT2440 1046483 NP_745860.1 CDS PP_3728 NC_002947.3 4253872 4256124 R similar to GP:9951266; identified by sequence similarity; multi-sensor hybrid histidine kinase complement(4253872..4256124) Pseudomonas putida KT2440 1046490 NP_745861.1 CDS PP_3729 NC_002947.3 4256121 4256903 R similar to GP:9950221; identified by sequence similarity; amino acid ABC transporter substrate-binding protein complement(4256121..4256903) Pseudomonas putida KT2440 1045577 NP_745862.1 CDS PP_3730 NC_002947.3 4256900 4257616 R similar to GP:9951267; identified by sequence similarity; transcriptional regulator complement(4256900..4257616) Pseudomonas putida KT2440 1046251 NP_745863.1 CDS PP_3731 NC_002947.3 4257690 4258334 R identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator complement(4257690..4258334) Pseudomonas putida KT2440 1046327 NP_745864.1 CDS PP_3732 NC_002947.3 4258451 4259197 D identified by match to PFAM protein family HMM PF00378; enoyl-CoA hydratase 4258451..4259197 Pseudomonas putida KT2440 1046475 NP_745865.1 CDS PP_3733 NC_002947.3 4259251 4260309 R similar to GB:L24392, PID:402917, and SP:P52670; identified by sequence similarity; ABC transporter complement(4259251..4260309) Pseudomonas putida KT2440 1046504 NP_745866.1 CDS PP_3734 NC_002947.3 4260299 4262758 R similar to GP:5508818, and GP:5508818; identified by sequence similarity; hypothetical protein complement(4260299..4262758) Pseudomonas putida KT2440 1045584 NP_745867.1 CDS PP_3735 NC_002947.3 4262758 4263423 R similar to GB:L24392, PID:402917, and SP:P52670; identified by sequence similarity; ABC transporter ATP-binding protein complement(4262758..4263423) Pseudomonas putida KT2440 1046424 NP_745868.1 CDS vanA NC_002947.3 4263705 4264772 D similar to GP:2765429, and GB:X55141; identified by sequence similarity; Rieske (2Fe-2S) domain-containing protein 4263705..4264772 Pseudomonas putida KT2440 1046507 NP_745869.1 CDS vanB NC_002947.3 4264785 4265735 D similar to SP:O54037, and SP:O54037; identified by sequence similarity; ferredoxin 4264785..4265735 Pseudomonas putida KT2440 1046180 NP_745870.1 CDS PP_3738 NC_002947.3 4265742 4266455 R similar to GP:6646872, and GP:6646872; identified by sequence similarity; GntR family transcriptional regulator complement(4265742..4266455) Pseudomonas putida KT2440 1046176 NP_745871.1 CDS PP_3740 NC_002947.3 4267958 4269298 R identified by match to TIGR protein family HMM TIGR00895; major facilitator family transporter complement(4267958..4269298) Pseudomonas putida KT2440 1045424 NP_745872.1 CDS mrdA-1 NC_002947.3 4269859 4271754 D identified by match to PFAM protein family HMM PF00905; penicillin-binding protein 2 4269859..4271754 Pseudomonas putida KT2440 1046288 NP_745873.1 CDS PP_3742 NC_002947.3 4271797 4272423 R identified by match to PFAM protein family HMM PF02798; glutathione S-transferase complement(4271797..4272423) Pseudomonas putida KT2440 1046502 NP_745874.1 CDS PP_3743 NC_002947.3 4272705 4273022 D similar to GP:9951794; identified by sequence similarity; hypothetical protein 4272705..4273022 Pseudomonas putida KT2440 1046498 NP_745875.1 CDS glcC NC_002947.3 4273083 4273874 R similar to GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; DNA-binding transcriptional regulator GlcC complement(4273083..4273874) Pseudomonas putida KT2440 1046289 NP_745876.1 CDS glcD NC_002947.3 4274042 4275541 D similar to SP:P32718, PID:396419, GB:U00096, and PID:1790522; identified by sequence similarity; glycolate oxidase subunit GlcD 4274042..4275541 Pseudomonas putida KT2440 1046295 NP_745877.1 CDS glcE NC_002947.3 4275541 4276593 D similar to SP:P52073, GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; glycolate oxidase FAD binding subunit 4275541..4276593 Pseudomonas putida KT2440 1041874 NP_745878.1 CDS glcF NC_002947.3 4276603 4277838 D similar to SP:P52074, GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; glycolate oxidase iron-sulfur subunit 4276603..4277838 Pseudomonas putida KT2440 1046285 NP_745879.1 CDS glcG NC_002947.3 4277831 4278229 D similar to GB:X75346, GB:U12779, SP:P49137, and PID:530090; identified by sequence similarity; hypothetical protein 4277831..4278229 Pseudomonas putida KT2440 1045916 NP_745880.1 CDS PP_3749 NC_002947.3 4278192 4278707 D hypothetical protein 4278192..4278707 Pseudomonas putida KT2440 1046308 NP_745881.1 CDS PP_3750 NC_002947.3 4278799 4280232 D identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4278799..4280232 Pseudomonas putida KT2440 1046287 NP_745882.1 CDS PP_3751 NC_002947.3 4280225 4281421 R similar to GB:J03459, GB:J02959, SP:P09960, PID:307130, PID:307131, and PID:976396; identified by sequence similarity; major facilitator superfamily transporter complement(4280225..4281421) Pseudomonas putida KT2440 1043675 NP_745883.1 CDS PP_3753 NC_002947.3 4282139 4283227 R similar to GP:9948615; identified by sequence similarity; AraC family transcriptional regulator complement(4282139..4283227) Pseudomonas putida KT2440 1046410 NP_745884.1 CDS PP_3754 NC_002947.3 4283396 4284580 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 4283396..4284580 Pseudomonas putida KT2440 1046330 NP_745885.1 CDS paaH NC_002947.3 4284594 4285442 D similar to GP:10176425; identified by sequence similarity; 3-hydroxybutyryl-CoA dehydrogenase 4284594..4285442 Pseudomonas putida KT2440 1046246 NP_745886.1 CDS PP_3756 NC_002947.3 4285455 4286036 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 4285455..4286036 Pseudomonas putida KT2440 1046378 NP_745887.1 CDS PP_3757 NC_002947.3 4286085 4286462 R similar to GP:3758881, and GP:3758881; identified by sequence similarity; response regulator receiver protein complement(4286085..4286462) Pseudomonas putida KT2440 1046423 NP_745888.1 CDS PP_3758 NC_002947.3 4286507 4287733 R similar to GP:5566398; identified by sequence similarity; response regulator receiver sensor signal transduction histidine kinase complement(4286507..4287733) Pseudomonas putida KT2440 1046304 NP_745889.1 CDS PP_3759 NC_002947.3 4287727 4288302 R similar to GB:K02567, GB:M13792, GB:K00509, GB:X02199, GB:S57810, GB:X02189, GB:X02190, GB:X02191, GB:X02192, GB:X02193, GB:X02194, GB:X02195, GB:X02196, GB:X02197, GB:X02198, SP:P00813, PID:1197210, GB:K02567, GB:M13792, GB:K00509, GB:X02199, GB:S57810, GB:X02189, GB:X02190, GB:X02191, GB:X02192, GB:X02193, GB:X02194, GB:X02195, GB:X02196, GB:X02197, GB:X02198, SP:P00813, and PID:1197210; identified by sequence similarity; chemotaxis protein CheB complement(4287727..4288302) Pseudomonas putida KT2440 1046394 NP_745890.1 CDS PP_3760 NC_002947.3 4288299 4289120 R similar to GB:J03459, GB:J02959, SP:P09960, PID:307130, PID:307131, PID:976396, GB:J03459, GB:J02959, SP:P09960, PID:307130, PID:307131, and PID:976396; identified by sequence similarity; chemotaxis protein CheR complement(4288299..4289120) Pseudomonas putida KT2440 1046426 NP_745891.1 CDS PP_3761 NC_002947.3 4289117 4292584 R similar to GP:8246822; identified by sequence similarity; multi-sensor hybrid histidine kinase complement(4289117..4292584) Pseudomonas putida KT2440 1046400 NP_745892.1 CDS PP_3762 NC_002947.3 4292832 4293182 D similar to GP:7019233; identified by sequence similarity; response regulator receiver protein 4292832..4293182 Pseudomonas putida KT2440 1046491 NP_745893.1 CDS PP_3763 NC_002947.3 4293252 4294001 R catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase complement(4293252..4294001) Pseudomonas putida KT2440 1046403 NP_745894.1 CDS PP_3764 NC_002947.3 4294069 4295370 R similar to GP:3253207; identified by sequence similarity; porin complement(4294069..4295370) Pseudomonas putida KT2440 1046441 NP_745895.1 CDS PP_3765 NC_002947.3 4295720 4296079 D transcriptional regulator MvaT, P16 subunit 4295720..4296079 Pseudomonas putida KT2440 1046376 NP_745896.1 CDS gloA NC_002947.3 4296304 4296831 D similar to GB:Z14955, GB:Z14954, GB:Z29574, GB:Z29575, SP:Q02223, PID:1930146, PID:29408, PID:33807, PID:471245, and PID:499189; identified by sequence similarity; lactoylglutathione lyase 4296304..4296831 Pseudomonas putida KT2440 1046419 NP_745897.1 CDS PP_3767 NC_002947.3 4296929 4297171 D similar to GP:9949033, and GP:9949033; identified by sequence similarity; hypothetical protein 4296929..4297171 Pseudomonas putida KT2440 1046494 NP_745898.2 CDS aroE NC_002947.3 4297230 4298051 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4297230..4298051) Pseudomonas putida KT2440 1046382 NP_745899.1 CDS PP_3769 NC_002947.3 4298213 4298566 D hypothetical protein 4298213..4298566 Pseudomonas putida KT2440 1046367 NP_745900.1 CDS PP_3770 NC_002947.3 4298661 4298843 D hypothetical protein 4298661..4298843 Pseudomonas putida KT2440 1046432 NP_745901.1 CDS PP_3771 NC_002947.3 4298934 4299320 R hypothetical protein complement(4298934..4299320) Pseudomonas putida KT2440 1046467 NP_745902.1 CDS PP_3772 NC_002947.3 4299368 4300237 D identified by match to PFAM protein family HMM PF00717; phage repressor 4299368..4300237 Pseudomonas putida KT2440 1046362 NP_745903.1 CDS PP_3773 NC_002947.3 4300276 4300641 R hypothetical protein complement(4300276..4300641) Pseudomonas putida KT2440 1046335 NP_745904.1 CDS PP_3774 NC_002947.3 4300834 4301508 D alginate lyase 2 4300834..4301508 Pseudomonas putida KT2440 1046387 NP_745905.1 CDS PP_3775 NC_002947.3 4303152 4304300 R similar to GP:217024, and SP:P40854; identified by sequence similarity; sarcosine oxidase complement(4303152..4304300) Pseudomonas putida KT2440 1045586 NP_745906.1 CDS rarD-3 NC_002947.3 4304293 4305207 R similar to GP:6960247, and SP:P27844; identified by sequence similarity; rarD protein complement(4304293..4305207) Pseudomonas putida KT2440 1045594 NP_745907.1 CDS PP_3777 NC_002947.3 4305213 4306052 R similar to GP:6468417; identified by sequence similarity; hypothetical protein complement(4305213..4306052) Pseudomonas putida KT2440 1046355 NP_745908.1 CDS proC-1 NC_002947.3 4306070 4306864 R similar to SP:P22008; identified by sequence similarity; pyrroline-5-carboxylate reductase complement(4306070..4306864) Pseudomonas putida KT2440 1046229 NP_745909.1 CDS PP_3779 NC_002947.3 4307066 4307998 R similar to GP:882732; identified by sequence similarity; LysR family transcriptional regulator complement(4307066..4307998) Pseudomonas putida KT2440 1045572 NP_745910.1 CDS PP_3780 NC_002947.3 4308090 4308245 R hypothetical protein complement(4308090..4308245) Pseudomonas putida KT2440 1046388 NP_745911.1 CDS PP_3781 NC_002947.3 4308593 4310008 D similar to GB:X04106, SP:P04632, PID:179909, PID:1905903, and PID:35328; identified by sequence similarity; oxygen-independent coproporphyrinogen III oxidase 4308593..4310008 Pseudomonas putida KT2440 1046188 NP_745912.1 CDS PP_3782 NC_002947.3 4310035 4310274 D identified by match to PFAM protein family HMM PF00550; hypothetical protein 4310035..4310274 Pseudomonas putida KT2440 1044150 NP_745913.1 CDS PP_3783 NC_002947.3 4310287 4311222 D similar to GP:5748808, GB:U09069, PID:483880, PID:563395, PID:563401, PID:563407, PID:563409, PID:563420, PID:563432, PID:563436, PID:563440, PID:563442, PID:609461, and PID:836630; identified by sequence similarity; hypothetical protein 4310287..4311222 Pseudomonas putida KT2440 1045892 NP_745914.1 CDS PP_3784 NC_002947.3 4311279 4312430 D similar to GP:2624947; identified by sequence similarity; hypothetical protein 4311279..4312430 Pseudomonas putida KT2440 1046194 NP_745915.1 CDS PP_3785 NC_002947.3 4312436 4313776 D hypothetical protein 4312436..4313776 Pseudomonas putida KT2440 1045595 NP_745916.1 CDS PP_3786 NC_002947.3 4313797 4315005 D similar to GB:X79782, SP:P01701, SP:P06316, SP:P06888, PID:473562, PID:497342, PID:497381, PID:506429, PID:507343, PID:517347, PID:553499, PID:575231, PID:587368, PID:619436, PID:619437, and PID:758087; identified by sequence similarity; aminotransferase 4313797..4315005 Pseudomonas putida KT2440 1041995 NP_745917.1 CDS PP_3787 NC_002947.3 4315002 4315919 D identified by match to TIGR protein family HMM TIGR00747; hypothetical protein 4315002..4315919 Pseudomonas putida KT2440 1046292 NP_745918.1 CDS PP_3788 NC_002947.3 4315916 4317469 D similar to SP:O30409, and GP:3510629; identified by sequence similarity; non-ribosomal peptide synthetase 4315916..4317469 Pseudomonas putida KT2440 1046461 NP_745919.1 CDS PP_3789 NC_002947.3 4317738 4318958 D similar to GP:10175834, and GP:9947140; identified by sequence similarity; efflux transporter 4317738..4318958 Pseudomonas putida KT2440 1046416 NP_745920.1 CDS dapF NC_002947.3 4319028 4319834 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4319028..4319834 Pseudomonas putida KT2440 1046393 NP_745921.1 CDS PP_3791 NC_002947.3 4320136 4320762 R identified by match to PFAM protein family HMM PF00589; phage integrase site specific recombinase complement(4320136..4320762) Pseudomonas putida KT2440 1047024 NP_745922.1 CDS PP_3792 NC_002947.3 4321854 4321988 R similar to GP:9187576; identified by sequence similarity; hypothetical protein complement(4321854..4321988) Pseudomonas putida KT2440 1041879 NP_745923.1 CDS PP_3793 NC_002947.3 4322362 4323342 D similar to GP:5059119; identified by sequence similarity; transposase 4322362..4323342 Pseudomonas putida KT2440 1045562 NP_745924.1 CDS pbpG NC_002947.3 4323707 4324633 D specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 4323707..4324633 Pseudomonas putida KT2440 1046541 NP_745925.1 CDS PP_3795 NC_002947.3 4324900 4325346 R hypothetical protein complement(4324900..4325346) Pseudomonas putida KT2440 1046473 NP_745926.1 CDS PP_3796 NC_002947.3 4325521 4326855 D similar to GP:9948427, GB:X15144, SP:P26998, and PID:1340162; identified by sequence similarity; L-ornithine N5-oxygenase 4325521..4326855 Pseudomonas putida KT2440 1046390 NP_745927.1 CDS PP_3797 NC_002947.3 4327031 4328224 D identified by match to PFAM protein family HMM PF03929; hypothetical protein 4327031..4328224 Pseudomonas putida KT2440 1046569 NP_745928.1 CDS PP_3798 NC_002947.3 4328221 4328754 D hypothetical protein 4328221..4328754 Pseudomonas putida KT2440 1046552 NP_745929.1 CDS PP_3799 NC_002947.3 4328751 4329071 D hypothetical protein 4328751..4329071 Pseudomonas putida KT2440 1046555 NP_745930.1 CDS PP_3800 NC_002947.3 4329068 4329637 D hypothetical protein 4329068..4329637 Pseudomonas putida KT2440 1046765 NP_745931.1 CDS PP_3801 NC_002947.3 4329654 4330556 D identified by match to PFAM protein family HMM PF01297; ABC transporter substrate-binding protein 4329654..4330556 Pseudomonas putida KT2440 1046766 NP_745932.1 CDS PP_3802 NC_002947.3 4330553 4331299 D identified by match to PFAM protein family HMM PF00005; cation ABC transporter ATP-binding protein 4330553..4331299 Pseudomonas putida KT2440 1046763 NP_745933.1 CDS PP_3803 NC_002947.3 4331299 4332198 D identified by match to PFAM protein family HMM PF00950; hypothetical protein 4331299..4332198 Pseudomonas putida KT2440 1046762 NP_745934.1 CDS PP_3804 NC_002947.3 4332195 4333058 D identified by match to PFAM protein family HMM PF01297; hypothetical protein 4332195..4333058 Pseudomonas putida KT2440 1046761 NP_745935.1 CDS PP_3805 NC_002947.3 4333142 4334194 R identified by match to PFAM protein family HMM PF02167; hypothetical protein complement(4333142..4334194) Pseudomonas putida KT2440 1046760 NP_745936.1 CDS PP_3806 NC_002947.3 4334221 4334772 R identified by match to PFAM protein family HMM PF00857; isochorismatase superfamily hydrolase complement(4334221..4334772) Pseudomonas putida KT2440 1046759 NP_745937.1 CDS PP_3807 NC_002947.3 4334829 4335548 R identified by match to TIGR protein family HMM TIGR01738; thioesterase complement(4334829..4335548) Pseudomonas putida KT2440 1046758 NP_745938.1 CDS PP_3808 NC_002947.3 4335545 4335766 R similar to GP:9948456; identified by sequence similarity; balhimycin biosynthetic protein MbtH complement(4335545..4335766) Pseudomonas putida KT2440 1046757 NP_745939.1 CDS PP_3809 NC_002947.3 4335778 4335870 R hypothetical protein complement(4335778..4335870) Pseudomonas putida KT2440 1046756 NP_745940.1 CDS PP_3810 NC_002947.3 4335900 4336301 R hypothetical protein complement(4335900..4336301) Pseudomonas putida KT2440 1046755 NP_745941.1 CDS PP_3811 NC_002947.3 4336328 4337212 R similar to GP:9947128; identified by sequence similarity; LysR family transcriptional regulator complement(4336328..4337212) Pseudomonas putida KT2440 1046754 NP_745942.1 CDS PP_3812 NC_002947.3 4337359 4338378 D alpha/beta hydrolase 4337359..4338378 Pseudomonas putida KT2440 1046753 NP_745943.1 CDS ribBA-2 NC_002947.3 4338892 4340013 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 4338892..4340013 Pseudomonas putida KT2440 1046752 NP_745944.1 CDS PP_3814 NC_002947.3 4340344 4341369 D similar to GP:6689865; identified by sequence similarity; polyamine ABC transporter substrate-binding protein 4340344..4341369 Pseudomonas putida KT2440 1046751 NP_745945.1 CDS PP_3815 NC_002947.3 4341366 4342283 D similar to GB:X14967, SP:P15008, PID:43551, and PID:2425181; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 4341366..4342283 Pseudomonas putida KT2440 1046750 NP_745946.1 CDS PP_3816 NC_002947.3 4342290 4343099 D similar to GB:X14967, SP:P15008, PID:43551, and PID:2425181; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein 4342290..4343099 Pseudomonas putida KT2440 1046749 NP_745947.1 CDS PP_3817 NC_002947.3 4343119 4344267 D identified by match to TIGR protein family HMM TIGR01187; polyamine ABC transporter ATP-binding protein 4343119..4344267 Pseudomonas putida KT2440 1046748 NP_745948.1 CDS PP_3818 NC_002947.3 4344423 4345730 D identified by match to PFAM protein family HMM PF01449; OmpA/MotB domain-containing protein 4344423..4345730 Pseudomonas putida KT2440 1046747 NP_745949.1 CDS gor NC_002947.3 4345734 4347089 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(4345734..4347089) Pseudomonas putida KT2440 1046746 NP_745950.1 CDS PP_3820 NC_002947.3 4347212 4348633 R similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase complement(4347212..4348633) Pseudomonas putida KT2440 1046745 NP_745951.1 CDS galU NC_002947.3 4349107 4349946 R identified by match to TIGR protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(4349107..4349946) Pseudomonas putida KT2440 1046744 NP_745952.1 CDS PP_3822 NC_002947.3 4350183 4351097 R identified by match to PFAM protein family HMM PF00034; cytochrome c family protein complement(4350183..4351097) Pseudomonas putida KT2440 1046743 NP_745953.1 CDS PP_3823 NC_002947.3 4351094 4351747 R identified by match to PFAM protein family HMM PF00034; cytochrome c-type protein complement(4351094..4351747) Pseudomonas putida KT2440 1046742 NP_745954.1 CDS PP_3824 NC_002947.3 4351822 4352202 R hypothetical protein complement(4351822..4352202) Pseudomonas putida KT2440 1046741 NP_745955.1 CDS PP_3825 NC_002947.3 4352341 4352643 D hypothetical protein 4352341..4352643 Pseudomonas putida KT2440 1046740 NP_745956.1 CDS PP_3826 NC_002947.3 4352636 4352833 R hypothetical protein complement(4352636..4352833) Pseudomonas putida KT2440 1046739 NP_745957.1 CDS PP_3827 NC_002947.3 4352873 4353958 D similar to GP:9950413; identified by sequence similarity; hypothetical protein 4352873..4353958 Pseudomonas putida KT2440 1046738 NP_745958.1 CDS modA NC_002947.3 4354041 4354799 D identified by match to TIGR protein family HMM TIGR01256; molybdenum ABC transporter substrate-binding protein 4354041..4354799 Pseudomonas putida KT2440 1046737 NP_745959.1 CDS modB NC_002947.3 4354799 4355479 D similar to GB:L07738, GB:Z19603, SP:Q06432, PID:306473, and PID:450530; identified by sequence similarity; molybdate ABC transporter permease 4354799..4355479 Pseudomonas putida KT2440 1046736 NP_745960.1 CDS modC NC_002947.3 4355481 4356572 D similar to GP:9947850; identified by sequence similarity; molybdate ABC transporter ATPase 4355481..4356572 Pseudomonas putida KT2440 1046735 NP_745961.1 CDS PP_3831 NC_002947.3 4356630 4357652 D identified by match to PFAM protein family HMM PF01028; DNA topoisomerase 4356630..4357652 Pseudomonas putida KT2440 1046734 NP_745962.1 CDS PP_3832 NC_002947.3 4357906 4358103 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 4357906..4358103 Pseudomonas putida KT2440 1046733 NP_745963.1 CDS PP_3833 NC_002947.3 4358143 4358496 R similar to GP:3236110; identified by sequence similarity; response regulator receiver protein complement(4358143..4358496) Pseudomonas putida KT2440 1046732 NP_745964.1 CDS PP_3834 NC_002947.3 4358508 4359953 R identified by match to TIGR protein family HMM TIGR01189; non-specific serine/threonine protein kinase complement(4358508..4359953) Pseudomonas putida KT2440 1046731 NP_745965.1 CDS PP_3835 NC_002947.3 4359959 4361119 R identified by match to PFAM protein family HMM PF02518; PAS/PAC sensor signal transduction histidine kinase complement(4359959..4361119) Pseudomonas putida KT2440 1046730 NP_745966.1 CDS PP_3836 NC_002947.3 4361204 4361539 R hypothetical protein complement(4361204..4361539) Pseudomonas putida KT2440 1046729 NP_745967.1 CDS PP_3837 NC_002947.3 4361868 4362281 D similar to SP:P25919, and PID:152706; identified by sequence similarity; SURF4 domain-containing protein 4361868..4362281 Pseudomonas putida KT2440 1046728 NP_745968.1 CDS PP_3838 NC_002947.3 4362271 4362510 D hypothetical protein 4362271..4362510 Pseudomonas putida KT2440 1046727 NP_745969.1 CDS PP_3839 NC_002947.3 4362913 4363923 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 4362913..4363923 Pseudomonas putida KT2440 1046726 NP_745970.1 CDS PP_3840 NC_002947.3 4363997 4364221 D hypothetical protein 4363997..4364221 Pseudomonas putida KT2440 1046725 NP_745971.1 CDS PP_3841 NC_002947.3 4364766 4365137 R similar to GP:1841790; identified by sequence similarity; MerR family transcriptional regulator complement(4364766..4365137) Pseudomonas putida KT2440 1046724 NP_745972.1 CDS PP_3842 NC_002947.3 4365210 4366307 D identified by match to TIGR protein family HMM TIGR01746; hypothetical protein 4365210..4366307 Pseudomonas putida KT2440 1046723 NP_745973.1 CDS PP_3843 NC_002947.3 4366433 4366732 R hypothetical protein complement(4366433..4366732) Pseudomonas putida KT2440 1046722 NP_745974.1 CDS PP_3844 NC_002947.3 4366912 4368045 R identified by match to PFAM protein family HMM PF03576; D-aminopeptidase complement(4366912..4368045) Pseudomonas putida KT2440 1046721 NP_745975.1 CDS PP_3845 NC_002947.3 4368119 4369228 R identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein complement(4368119..4369228) Pseudomonas putida KT2440 1046720 NP_745976.1 CDS PP_3846 NC_002947.3 4369369 4370184 R similar to GP:9949754; identified by sequence similarity; carbon-nitrogen hydrolase complement(4369369..4370184) Pseudomonas putida KT2440 1046719 NP_745977.1 CDS PP_3847 NC_002947.3 4370305 4371102 D identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator 4370305..4371102 Pseudomonas putida KT2440 1046718 NP_745978.1 CDS PP_3848 NC_002947.3 4371340 4371447 D hypothetical protein 4371340..4371447 Pseudomonas putida KT2440 1046717 NP_745979.1 CDS PP_3849 NC_002947.3 4372649 4374955 D similar to GB:U12789, SP:P54868, PID:555833, and PID:619877; identified by sequence similarity; calcium-binding protein, hemolysin-type 4372649..4374955 Pseudomonas putida KT2440 1046716 NP_745980.1 CDS PP_3850 NC_002947.3 4375034 4375297 R hypothetical protein complement(4375034..4375297) Pseudomonas putida KT2440 1046715 NP_745981.1 CDS PP_3851 NC_002947.3 4375643 4375966 R hypothetical protein complement(4375643..4375966) Pseudomonas putida KT2440 1046714 NP_745982.1 CDS PP_3852 NC_002947.3 4376082 4377638 R hypothetical protein complement(4376082..4377638) Pseudomonas putida KT2440 1046713 NP_745983.1 CDS PP_3853 NC_002947.3 4377659 4378042 D hypothetical protein 4377659..4378042 Pseudomonas putida KT2440 1046712 NP_745984.1 CDS PP_3854 NC_002947.3 4378171 4378710 R similar to GP:8895133, SP:P37750, GB:U03041, GB:U09876, PID:508245, and PID:510256; identified by sequence similarity; endolysin complement(4378171..4378710) Pseudomonas putida KT2440 1046711 NP_745985.1 CDS PP_3855 NC_002947.3 4379112 4379336 R hypothetical protein complement(4379112..4379336) Pseudomonas putida KT2440 1046710 NP_745986.1 CDS PP_3856 NC_002947.3 4379759 4380523 R hypothetical protein complement(4379759..4380523) Pseudomonas putida KT2440 1046709 NP_745987.1 CDS PP_3857 NC_002947.3 4380535 4382787 R hypothetical protein complement(4380535..4382787) Pseudomonas putida KT2440 1046708 NP_745988.1 CDS PP_3858 NC_002947.3 4383049 4383852 R similar to GP:9309376; identified by sequence similarity; tail fiber protein complement(4383049..4383852) Pseudomonas putida KT2440 1046707 NP_745989.1 CDS PP_3859 NC_002947.3 4383855 4384499 R similar to SP:Q9T1V1, and SP:P09947; identified by sequence similarity; hypothetical protein complement(4383855..4384499) Pseudomonas putida KT2440 1046706 NP_745990.1 CDS PP_3860 NC_002947.3 4384490 4385533 R similar to SP:P44240, GB:L10972, and PID:425440; identified by sequence similarity; phage FluMu protein gp47 complement(4384490..4385533) Pseudomonas putida KT2440 1046705 NP_745991.1 CDS PP_3861 NC_002947.3 4385523 4385909 R similar to SP:Q9T1V3, SP:Q9T1V3, and SP:P44239; identified by sequence similarity; phage FluMu protein gp46 complement(4385523..4385909) Pseudomonas putida KT2440 1046704 NP_745992.1 CDS PP_3862 NC_002947.3 4385906 4386406 R similar to SP:Q9T1V4; identified by sequence similarity; phage assembly protein complement(4385906..4386406) Pseudomonas putida KT2440 1046703 NP_745993.1 CDS PP_3863 NC_002947.3 4386415 4387524 R similar to SP:P22183, GB:M35034, GB:X55034, PID:147817, PID:40847, GB:U00096, PID:1786267, SP:P22183, GB:M35034, GB:X55034, PID:147817, PID:40847, GB:U00096, and PID:1786267; identified by sequence similarity; phage tail protein complement(4386415..4387524) Pseudomonas putida KT2440 1046702 NP_745994.1 CDS PP_3864 NC_002947.3 4387528 4388790 R similar to PIR:A64127, and SP:P71389; identified by sequence similarity; phage FluMu DNA circulation protein complement(4387528..4388790) Pseudomonas putida KT2440 1046701 NP_745995.1 CDS PP_3865 NC_002947.3 4388783 4390738 R similar to GP:15212238; identified by sequence similarity; phage tail protein complement(4388783..4390738) Pseudomonas putida KT2440 1046700 NP_745996.1 CDS PP_3866 NC_002947.3 4390868 4391191 R similar to GP:2852350; identified by sequence similarity; hypothetical protein complement(4390868..4391191) Pseudomonas putida KT2440 1046699 NP_745997.1 CDS PP_3867 NC_002947.3 4391161 4391514 R similar to GB:L10971, GB:L10971, PID:425438, GB:L10971, GB:L10971, and PID:425438; identified by sequence similarity; phage tail tube protein complement(4391161..4391514) Pseudomonas putida KT2440 1046698 NP_745998.1 CDS PP_3868 NC_002947.3 4391591 4393012 R similar to GB:L01112, SP:P45375, PID:145016, and PID:1247706; identified by sequence similarity; group II intron-encoding maturase complement(4391591..4393012) Pseudomonas putida KT2440 1046697 NP_745999.1 CDS PP_3869 NC_002947.3 4393482 4394969 R similar to GB:Z23169, PID:313353, GB:L10971, GB:L10971, PID:425438, GB:L10971, GB:L10971, and PID:425438; identified by sequence similarity; phage sheath protein complement(4393482..4394969) Pseudomonas putida KT2440 1046696 NP_746000.1 CDS PP_3870 NC_002947.3 4394969 4395172 R similar to GP:1834290, and SP:P44232; identified by sequence similarity; phage FluMu protein gp38 complement(4394969..4395172) Pseudomonas putida KT2440 1046695 NP_746001.1 CDS PP_3871 NC_002947.3 4395178 4395645 R hypothetical protein complement(4395178..4395645) Pseudomonas putida KT2440 1046694 NP_746002.1 CDS PP_3872 NC_002947.3 4395671 4395790 D hypothetical protein 4395671..4395790 Pseudomonas putida KT2440 1046693 NP_746003.1 CDS PP_3873 NC_002947.3 4395801 4396316 R identified by match to TIGR protein family HMM TIGR01725; hypothetical protein complement(4395801..4396316) Pseudomonas putida KT2440 1046692 NP_746004.1 CDS PP_3874 NC_002947.3 4396309 4396683 R identified by match to TIGR protein family HMM TIGR01563; hypothetical protein complement(4396309..4396683) Pseudomonas putida KT2440 1046691 NP_746005.1 CDS PP_3875 NC_002947.3 4396686 4397237 R hypothetical protein complement(4396686..4397237) Pseudomonas putida KT2440 1046690 NP_746006.1 CDS PP_3876 NC_002947.3 4397240 4397566 R hypothetical protein complement(4397240..4397566) Pseudomonas putida KT2440 1046689 NP_746007.1 CDS PP_3877 NC_002947.3 4397541 4399013 R identified by match to TIGR protein family HMM TIGR01554; hypothetical protein complement(4397541..4399013) Pseudomonas putida KT2440 1046688 NP_746008.1 CDS PP_3878 NC_002947.3 4398916 4399887 R similar to GP:6723229, and GP:6723247; identified by sequence similarity; phage minor capsid protein C complement(4398916..4399887) Pseudomonas putida KT2440 1046687 NP_746009.1 CDS PP_3879 NC_002947.3 4399884 4401155 R similar to GP:6739661, SP:P17058, PID:46001, and PID:46126; identified by sequence similarity; HK97 family phage portal protein complement(4399884..4401155) Pseudomonas putida KT2440 1046686 NP_746010.1 CDS PP_3880 NC_002947.3 4401158 4401346 R hypothetical protein complement(4401158..4401346) Pseudomonas putida KT2440 1046685 NP_746011.1 CDS PP_3881 NC_002947.3 4401343 4403151 R similar to GP:3128374, and GP:6739656; identified by sequence similarity; phage terminase, large subunit complement(4401343..4403151) Pseudomonas putida KT2440 1046684 NP_746012.1 CDS PP_3882 NC_002947.3 4403111 4403578 R similar to GP:6066822; identified by sequence similarity; phage terminase small subunit complement(4403111..4403578) Pseudomonas putida KT2440 1046683 NP_746013.1 CDS PP_3883 NC_002947.3 4403714 4404034 R similar to GP:6901612, GB:L24552, SP:P41102, and PID:404082; identified by sequence similarity; phage holin complement(4403714..4404034) Pseudomonas putida KT2440 1046682 NP_746014.1 CDS PP_3884 NC_002947.3 4404038 4404361 R similar to GP:6066815, GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; phage holin complement(4404038..4404361) Pseudomonas putida KT2440 1046681 NP_746015.1 CDS PP_3885 NC_002947.3 4404792 4404899 R hypothetical protein complement(4404792..4404899) Pseudomonas putida KT2440 1046680 NP_746016.1 CDS PP_3886 NC_002947.3 4405298 4405558 R hypothetical protein complement(4405298..4405558) Pseudomonas putida KT2440 1046679 NP_746017.1 CDS PP_3887 NC_002947.3 4405542 4406213 R hypothetical protein complement(4405542..4406213) Pseudomonas putida KT2440 1046678 NP_746018.1 CDS PP_3888 NC_002947.3 4406226 4406546 R hypothetical protein complement(4406226..4406546) Pseudomonas putida KT2440 1046677 NP_746019.1 CDS PP_3889 NC_002947.3 4406543 4407841 R similar to GB:M15502, SP:P07954, PID:1545996, and PID:182794; identified by sequence similarity; phage integrase complement(4406543..4407841) Pseudomonas putida KT2440 1046676 NP_746020.1 CDS PP_3890 NC_002947.3 4407838 4408281 R hypothetical protein complement(4407838..4408281) Pseudomonas putida KT2440 1046675 NP_746021.1 CDS PP_3891 NC_002947.3 4408430 4408726 R similar to GP:6901638, and GP:6901638; identified by sequence similarity; hypothetical protein complement(4408430..4408726) Pseudomonas putida KT2440 1046674 NP_746022.1 CDS PP_3892 NC_002947.3 4408708 4408914 R hypothetical protein complement(4408708..4408914) Pseudomonas putida KT2440 1046673 NP_746023.1 CDS PP_3893 NC_002947.3 4408914 4410311 R identified by match to TIGR protein family HMM TIGR00665; phage DNA helicase complement(4408914..4410311) Pseudomonas putida KT2440 1046672 NP_746024.1 CDS PP_3894 NC_002947.3 4410308 4411138 R similar to GP:8895171, SP:Q02103, GB:X63438, and PID:40785; identified by sequence similarity; phage replication protein O complement(4410308..4411138) Pseudomonas putida KT2440 1046671 NP_746025.1 CDS PP_3895 NC_002947.3 4411463 4411675 R similar to GB:D14539, GB:L04285, SP:Q03111, PID:182110, and PID:436042; identified by sequence similarity; regulatory protein Cro complement(4411463..4411675) Pseudomonas putida KT2440 1046670 NP_746026.1 CDS PP_3896 NC_002947.3 4411763 4412410 D identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 4411763..4412410 Pseudomonas putida KT2440 1046669 NP_746027.1 CDS PP_3897 NC_002947.3 4412468 4412881 D hypothetical protein 4412468..4412881 Pseudomonas putida KT2440 1046668 NP_746028.1 CDS PP_3898 NC_002947.3 4412925 4413161 D similar to SP:P45567; identified by sequence similarity; hypothetical protein 4412925..4413161 Pseudomonas putida KT2440 1046667 NP_746029.1 CDS hicB-2 NC_002947.3 4415057 4415389 R similar to GP:3603326, and GP:3603326; identified by sequence similarity; hicB protein complement(4415057..4415389) Pseudomonas putida KT2440 1046666 NP_746030.1 CDS hicA-2 NC_002947.3 4415398 4415646 R similar to GP:3603325, and GP:3603325; identified by sequence similarity; hicA protein complement(4415398..4415646) Pseudomonas putida KT2440 1046665 NP_746031.1 CDS PP_3901 NC_002947.3 4415796 4416056 D hypothetical protein 4415796..4416056 Pseudomonas putida KT2440 1046664 NP_746032.1 CDS PP_3902 NC_002947.3 4416175 4416483 R hypothetical protein complement(4416175..4416483) Pseudomonas putida KT2440 1046663 NP_746033.1 CDS PP_3903 NC_002947.3 4416473 4416637 D hypothetical protein 4416473..4416637 Pseudomonas putida KT2440 1046662 NP_746034.1 CDS PP_3904 NC_002947.3 4416843 4417097 R hypothetical protein complement(4416843..4417097) Pseudomonas putida KT2440 1046661 NP_746035.1 CDS PP_3905 NC_002947.3 4417106 4417657 D identified by match to PFAM protein family HMM PF00196; LuxR family transcriptional regulator 4417106..4417657 Pseudomonas putida KT2440 1046660 NP_746036.1 CDS PP_3906 NC_002947.3 4417677 4417946 D hypothetical protein 4417677..4417946 Pseudomonas putida KT2440 1046659 NP_746037.1 CDS PP_3907 NC_002947.3 4417943 4418401 D hypothetical protein 4417943..4418401 Pseudomonas putida KT2440 1046658 NP_746038.1 CDS PP_3908 NC_002947.3 4418483 4418833 D hypothetical protein 4418483..4418833 Pseudomonas putida KT2440 1046657 NP_746039.1 CDS PP_3909 NC_002947.3 4418847 4419125 R hypothetical protein complement(4418847..4419125) Pseudomonas putida KT2440 1046656 NP_746040.1 CDS PP_3910 NC_002947.3 4419112 4419783 D hypothetical protein 4419112..4419783 Pseudomonas putida KT2440 1046655 NP_746041.1 CDS PP_3911 NC_002947.3 4419798 4420181 D hypothetical protein 4419798..4420181 Pseudomonas putida KT2440 1046654 NP_746042.1 CDS PP_3912 NC_002947.3 4420249 4421910 D similar to GP:9106848; identified by sequence similarity; DNA-cytosine methyltransferase 4420249..4421910 Pseudomonas putida KT2440 1046653 NP_746043.1 CDS PP_3913 NC_002947.3 4421907 4422596 D hypothetical protein 4421907..4422596 Pseudomonas putida KT2440 1046652 NP_746044.1 CDS PP_3914 NC_002947.3 4423111 4423494 D hypothetical protein 4423111..4423494 Pseudomonas putida KT2440 1046651 NP_746045.1 CDS PP_3915 NC_002947.3 4423766 4424089 D hypothetical protein 4423766..4424089 Pseudomonas putida KT2440 1046650 NP_746046.1 CDS PP_3916 NC_002947.3 4424086 4424478 D hypothetical protein 4424086..4424478 Pseudomonas putida KT2440 1046649 NP_746047.1 CDS PP_3917 NC_002947.3 4425740 4426078 D hypothetical protein 4425740..4426078 Pseudomonas putida KT2440 1046648 NP_746048.1 CDS PP_3918 NC_002947.3 4426015 4426119 R hypothetical protein complement(4426015..4426119) Pseudomonas putida KT2440 1046647 NP_746049.1 CDS PP_3919 NC_002947.3 4426118 4426363 D hypothetical protein 4426118..4426363 Pseudomonas putida KT2440 1046646 NP_746050.1 CDS PP_3920 NC_002947.3 4426365 4427414 D similar to GP:9107449; identified by sequence similarity; phage integrase 4426365..4427414 Pseudomonas putida KT2440 1046645 NP_746051.1 CDS PP_3921 NC_002947.3 4427580 4427678 R hypothetical protein complement(4427580..4427678) Pseudomonas putida KT2440 1046644 NP_746052.1 CDS PP_3922 NC_002947.3 4427744 4428763 R SohB; periplasmic protein; member of the peptidase S49 family; protease complement(4427744..4428763) Pseudomonas putida KT2440 1046643 NP_746053.1 CDS PP_3923 NC_002947.3 4428961 4429671 D identified by match to TIGR protein family HMM TIGR00249; phosphoglycerate mutase 4428961..4429671 Pseudomonas putida KT2440 1046642 NP_746054.1 CDS PP_3924 NC_002947.3 4429728 4430045 D identified by match to PFAM protein family HMM PF02036; sterol-binding domain-containing protein 4429728..4430045 Pseudomonas putida KT2440 1046641 NP_746055.1 CDS PP_3925 NC_002947.3 4430229 4431296 D similar to GP:9947815; identified by sequence similarity; aminoglycoside phosphotransferase 4430229..4431296 Pseudomonas putida KT2440 1046640 NP_746056.1 CDS PP_3926 NC_002947.3 4431333 4432100 D identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase 4431333..4432100 Pseudomonas putida KT2440 1046639 NP_746057.1 CDS PP_3927 NC_002947.3 4432101 4432922 R type 12 methyltransferase complement(4432101..4432922) Pseudomonas putida KT2440 1046638 NP_746058.1 CDS PP_3928 NC_002947.3 4433560 4433850 D similar to SP:P76426, SP:P18021, SP:P06615, GB:X04967, PID:144169, and PID:147038; identified by sequence similarity; hypothetical protein 4433560..4433850 Pseudomonas putida KT2440 1046637 NP_746059.1 CDS PP_3929 NC_002947.3 4434013 4434279 D hypothetical protein 4434013..4434279 Pseudomonas putida KT2440 1046636 NP_746060.1 CDS PP_3930 NC_002947.3 4434353 4434745 D hypothetical protein 4434353..4434745 Pseudomonas putida KT2440 1046635 NP_746061.1 CDS PP_3931 NC_002947.3 4434872 4436701 D identified by match to PFAM protein family HMM PF03600; sodium/sulfate symporter family protein 4434872..4436701 Pseudomonas putida KT2440 1046634 NP_746062.1 CDS PP_3932 NC_002947.3 4437054 4438262 D similar to GP:9105918, SP:P37828, and PID:901847; identified by sequence similarity; diguanylate cyclase 4437054..4438262 Pseudomonas putida KT2440 1046633 NP_746063.1 CDS PP_3933 NC_002947.3 4438264 4439025 R similar to GP:6759580, and GP:6759580; identified by sequence similarity; hypothetical protein complement(4438264..4439025) Pseudomonas putida KT2440 1046632 NP_746064.1 CDS PP_3934 NC_002947.3 4439088 4440029 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4439088..4440029 Pseudomonas putida KT2440 1046631 NP_746065.1 CDS PP_3935 NC_002947.3 4440130 4440339 D hypothetical protein 4440130..4440339 Pseudomonas putida KT2440 1046630 NP_746066.1 CDS PP_3936 NC_002947.3 4440336 4440479 D hypothetical protein 4440336..4440479 Pseudomonas putida KT2440 1046629 NP_746067.1 CDS PP_3937 NC_002947.3 4440485 4440607 R hypothetical protein complement(4440485..4440607) Pseudomonas putida KT2440 1046628 NP_746068.1 CDS PP_3938 NC_002947.3 4440878 4441012 D hypothetical protein 4440878..4441012 Pseudomonas putida KT2440 1046627 NP_746069.1 CDS PP_3939 NC_002947.3 4441236 4442528 R similar to GP:7542442, and GP:3253207; identified by sequence similarity; porin complement(4441236..4442528) Pseudomonas putida KT2440 1046626 NP_746070.1 CDS PP_3940 NC_002947.3 4442667 4443980 R identified by match to TIGR protein family HMM TIGR00893; major facilitator family transporter complement(4442667..4443980) Pseudomonas putida KT2440 1046625 NP_746071.1 CDS PP_3941 NC_002947.3 4444189 4444830 R similar to GB:X12671, GB:X79536, GB:X04347, GB:U00947, PID:296650, PID:36102, PID:37610, PID:496898, GB:X12671, GB:X79536, GB:X04347, GB:U00947, PID:296650, PID:36102, PID:37610, and PID:496898; identified by sequence similarity; isochorismatase superfamily hydrolase complement(4444189..4444830) Pseudomonas putida KT2440 1046624 NP_746072.1 CDS PP_3942 NC_002947.3 4444846 4445598 R similar to GP:8570038, and GP:8570038; identified by sequence similarity; maleate cis-trans isomerase complement(4444846..4445598) Pseudomonas putida KT2440 1046623 NP_746073.1 CDS PP_3943 NC_002947.3 4445612 4446418 R similar to GP:9082330; identified by sequence similarity; alpha/beta hydrolase complement(4445612..4446418) Pseudomonas putida KT2440 1046622 NP_746074.1 CDS nahG NC_002947.3 4446415 4447563 R similar to GP:2271503, GB:D13318, GB:U13044, GB:X84366, SP:Q06546, PID:286027, and PID:531893; identified by sequence similarity; salicylate hydroxylase complement(4446415..4447563) Pseudomonas putida KT2440 1046621 NP_746075.1 CDS PP_3945 NC_002947.3 4447885 4448937 D similar to GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, PID:516469, GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, and PID:516469; identified by sequence similarity; hypothetical protein 4447885..4448937 Pseudomonas putida KT2440 1046620 NP_746076.1 CDS PP_3946 NC_002947.3 4449008 4449484 D similar to GP:9947568; identified by sequence similarity; MarR family transcriptional regulator 4449008..4449484 Pseudomonas putida KT2440 1046618 NP_746077.1 CDS PP_3947 NC_002947.3 4449926 4450399 D similar to GB:U09367, SP:P52737, and PID:487785; identified by sequence similarity; (2Fe-2S)-binding protein 4449926..4450399 Pseudomonas putida KT2440 1046617 NP_746078.1 CDS PP_3948 NC_002947.3 4450396 4453959 D identified by match to PFAM protein family HMM PF00034; aldehyde dehydrogenase 4450396..4453959 Pseudomonas putida KT2440 1046616 NP_746079.1 CDS PP_3949 NC_002947.3 4453963 4454601 R identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator complement(4453963..4454601) Pseudomonas putida KT2440 1046615 NP_746080.1 CDS PP_3950 NC_002947.3 4454806 4456983 R identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis transducer complement(4454806..4456983) Pseudomonas putida KT2440 1046614 NP_746081.1 CDS pcaI NC_002947.3 4457362 4458057 D similar to SP:Q01103, GB:X17405, SP:P10915, PID:1151009, and PID:34378; identified by sequence similarity; 3-oxoadipate CoA-transferase subunit A 4457362..4458057 Pseudomonas putida KT2440 1046613 NP_746082.1 CDS pcaJ NC_002947.3 4458066 4458707 D similar to SP:Q01104, GB:M82962, SP:Q16819, and PID:535475; identified by sequence similarity; 3-oxoadipate CoA-transferase subunit B 4458066..4458707 Pseudomonas putida KT2440 1046612 NP_746083.1 CDS PP_3953 NC_002947.3 4458975 4460429 D identified by match to PFAM protein family HMM PF03631; TrkH family potassium uptake protein 4458975..4460429 Pseudomonas putida KT2440 1046611 NP_746084.1 CDS PP_3954 NC_002947.3 4460534 4461484 D identified by match to TIGR protein family HMM TIGR01728; hypothetical protein 4460534..4461484 Pseudomonas putida KT2440 1046610 NP_746085.1 CDS PP_3955 NC_002947.3 4461512 4463539 D similar to GP:9951883; identified by sequence similarity; transporter 4461512..4463539 Pseudomonas putida KT2440 1046609 NP_746086.1 CDS PP_3956 NC_002947.3 4463536 4463952 D similar to GP:9951882, and GP:9951882; identified by sequence similarity; hypothetical protein 4463536..4463952 Pseudomonas putida KT2440 1046608 NP_746087.1 CDS PP_3957 NC_002947.3 4463980 4465953 R identified by match to PFAM protein family HMM PF02028; choline/carnitine/betaine transporter family protein complement(4463980..4465953) Pseudomonas putida KT2440 1046606 NP_746088.1 CDS PP_3958 NC_002947.3 4466257 4467618 D similar to GB:M57506, GB:M57502, SP:P22362, PID:184506, and PID:339729; identified by sequence similarity; sodium-proton antiporter, NhaA family 4466257..4467618 Pseudomonas putida KT2440 1046605 NP_746089.1 CDS PP_3959 NC_002947.3 4467755 4469116 D identified by match to PFAM protein family HMM PF00654; voltage-gated chloride channel family protein 4467755..4469116 Pseudomonas putida KT2440 1046604 NP_746090.1 CDS PP_3960 NC_002947.3 4469218 4469823 R identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator complement(4469218..4469823) Pseudomonas putida KT2440 1046603 NP_746091.1 CDS PP_3961 NC_002947.3 4469980 4471188 R similar to GP:9438231; identified by sequence similarity; major facilitator superfamily transporter complement(4469980..4471188) Pseudomonas putida KT2440 1046602 NP_746092.1 CDS PP_3962 NC_002947.3 4471971 4472792 D similar to GP:4105683; identified by sequence similarity; lipoprotein 4471971..4472792 Pseudomonas putida KT2440 1046601 NP_746093.1 CDS PP_3963 NC_002947.3 4473459 4473785 D similar to GP:1742048; identified by sequence similarity; hypothetical protein 4473459..4473785 Pseudomonas putida KT2440 1046600 NP_746094.1 CDS PP_3964 NC_002947.3 4473999 4475534 R similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 complement(4473999..4475534) Pseudomonas putida KT2440 1046599 NP_746095.1 CDS PP_3965 NC_002947.3 4475598 4475933 R similar to GP:4928612, and GP:6009406; identified by sequence similarity; ISPpu14, transposase Orf2 complement(4475598..4475933) Pseudomonas putida KT2440 1046598 NP_746096.1 CDS PP_3966 NC_002947.3 4475930 4476250 R similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 complement(4475930..4476250) Pseudomonas putida KT2440 1046597 NP_746097.1 CDS PP_3967 NC_002947.3 4476426 4476866 D similar to GB:Z22595, PID:435521, and SP:P52090; identified by sequence similarity; MutT/nudix family protein 4476426..4476866 Pseudomonas putida KT2440 1046596 NP_746098.1 CDS PP_3968 NC_002947.3 4476872 4477990 R similar to GP:5566398; identified by sequence similarity; sensor histidine kinase complement(4476872..4477990) Pseudomonas putida KT2440 1046595 NP_746099.1 CDS PP_3969 NC_002947.3 4478138 4478500 D similar to GP:9622952; identified by sequence similarity; response regulator 4478138..4478500 Pseudomonas putida KT2440 1046594 NP_746100.1 CDS PP_3970 NC_002947.3 4478649 4479851 D similar to GB:S45627, GB:S45629, GB:S45636, GB:S45637, GB:S45639, GB:S45640, GB:S45635, GB:M16594, GB:X65726, GB:X65727, GB:X65728, GB:X65729, GB:X65730, GB:X65731, GB:X65732, SP:P08263, SP:P09210, PID:306811, PID:825605, PID:825606, SP:P07176, PID:41360, PID:42257, GB:U00096, PID:1651333, and PID:1786962; identified by sequence similarity; molecular chaperone GroES 4478649..4479851 Pseudomonas putida KT2440 1046593 NP_746101.1 CDS PP_3971 NC_002947.3 4479865 4480098 D hypothetical protein 4479865..4480098 Pseudomonas putida KT2440 1046592 NP_746102.1 CDS PP_3972 NC_002947.3 4480131 4481456 D similar to SP:P80046, and PID:1478267; identified by sequence similarity; short chain dehydrogenase 4480131..4481456 Pseudomonas putida KT2440 1046591 NP_746103.1 CDS PP_3973 NC_002947.3 4481687 4481839 D hypothetical protein 4481687..4481839 Pseudomonas putida KT2440 1046590 NP_746104.1 CDS PP_3974 NC_002947.3 4481994 4482980 D similar to GP:6498264; identified by sequence similarity; LysR family transcriptional regulator 4481994..4482980 Pseudomonas putida KT2440 1046589 NP_746105.1 CDS PP_3975 NC_002947.3 4483000 4483461 R similar to GP:7636027, and GP:7636027; identified by sequence similarity; hypothetical protein complement(4483000..4483461) Pseudomonas putida KT2440 1046588 NP_746106.1 CDS PP_3976 NC_002947.3 4483669 4484355 D identified by match to PFAM protein family HMM PF00857; isochorismatase superfamily hydrolase 4483669..4484355 Pseudomonas putida KT2440 1046587 NP_746107.1 CDS PP_3977 NC_002947.3 4484824 4486125 D hypothetical protein 4484824..4486125 Pseudomonas putida KT2440 1046586 NP_746108.1 CDS PP_3978 NC_002947.3 4486128 4486298 D hypothetical protein 4486128..4486298 Pseudomonas putida KT2440 1046585 NP_746109.1 CDS PP_3979 NC_002947.3 4486395 4486715 D similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 4486395..4486715 Pseudomonas putida KT2440 1046584 NP_746110.1 CDS PP_3980 NC_002947.3 4486712 4487047 D similar to GP:4928612; identified by sequence similarity; ISPpu14, transposase Orf2 4486712..4487047 Pseudomonas putida KT2440 1046583 NP_746111.1 CDS PP_3981 NC_002947.3 4487111 4488646 D similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 4487111..4488646 Pseudomonas putida KT2440 1046582 NP_746112.1 CDS PP_3982 NC_002947.3 4489217 4491862 R identified by match to PFAM protein family HMM PF00005; hypothetical protein complement(4489217..4491862) Pseudomonas putida KT2440 1046581 NP_746113.1 CDS PP_3983 NC_002947.3 4492117 4492899 D hypothetical protein 4492117..4492899 Pseudomonas putida KT2440 1046580 NP_746114.1 CDS PP_3984 NC_002947.3 4493378 4493638 R similar to SP:P12059, GB:X52093, SP:P12059, and GB:X52093; identified by sequence similarity; ISPpu13, transposase Orf3 complement(4493378..4493638) Pseudomonas putida KT2440 1046579 NP_746115.1 CDS PP_3985 NC_002947.3 4493707 4495239 R similar to GP:5824139, and GP:8037785; identified by sequence similarity; ISPpu13, transposase Orf2 complement(4493707..4495239) Pseudomonas putida KT2440 1046578 NP_746116.1 CDS PP_3986 NC_002947.3 4495258 4495614 R similar to GP:5824138, and GP:8037784; identified by sequence similarity; ISPpu13, transposase Orf1 complement(4495258..4495614) Pseudomonas putida KT2440 1046577 NP_746117.1 CDS PP_3987 NC_002947.3 4495690 4496649 D similar to GP:9107449; identified by sequence similarity; phage integrase site specific recombinase 4495690..4496649 Pseudomonas putida KT2440 1046576 NP_746118.1 CDS PP_3988 NC_002947.3 4497954 4500002 R identified by match to PFAM protein family HMM PF02518; hypothetical protein complement(4497954..4500002) Pseudomonas putida KT2440 1046575 NP_746119.1 CDS PP_3989 NC_002947.3 4500014 4501060 R similar to GB:M62420, GB:J04056, GB:X88010, SP:P16152, PID:179978, and PID:181037; identified by sequence similarity; DNA-cytosine methyltransferase complement(4500014..4501060) Pseudomonas putida KT2440 1046574 NP_746120.1 CDS PP_3990 NC_002947.3 4501536 4502207 D identified by match to PFAM protein family HMM PF04178; hypothetical protein 4501536..4502207 Pseudomonas putida KT2440 1046573 NP_746121.1 CDS PP_3991 NC_002947.3 4502208 4502333 D hypothetical protein 4502208..4502333 Pseudomonas putida KT2440 1046572 NP_746122.1 CDS PP_3992 NC_002947.3 4502371 4503750 D identified by match to TIGR protein family HMM TIGR00801; xanthine/uracil permease 4502371..4503750 Pseudomonas putida KT2440 1046571 NP_746123.1 CDS dsrE NC_002947.3 4503848 4504240 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 4503848..4504240 Pseudomonas putida KT2440 1046570 NP_746124.1 CDS PP_3994 NC_002947.3 4504242 4504601 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 4504242..4504601 Pseudomonas putida KT2440 1046568 NP_746125.1 CDS PP_3995 NC_002947.3 4504601 4504897 D identified by match to PFAM protein family HMM PF04077; hypothetical protein 4504601..4504897 Pseudomonas putida KT2440 1046567 NP_746126.1 CDS PP_3996 NC_002947.3 4504894 4505229 D similar to GP:9948673; identified by sequence similarity; hypothetical protein 4504894..4505229 Pseudomonas putida KT2440 1046566 NP_746127.1 CDS PP_3997 NC_002947.3 4505226 4506227 D similar to GB:J05556, SP:P22894, and PID:180618; identified by sequence similarity; hypothetical protein 4505226..4506227 Pseudomonas putida KT2440 1046565 NP_746128.1 CDS PP_3998 NC_002947.3 4506304 4507281 D identified by match to PFAM protein family HMM PF00043; glutathione S-transferase domain-containing protein 4506304..4507281 Pseudomonas putida KT2440 1046564 NP_746129.1 CDS cobA-2 NC_002947.3 4507388 4508779 R similar to GB:X51730, GB:M15716, SP:P06401, PID:189935, and PID:35652; identified by sequence similarity; uroporphyrin-III C-methyltransferase complement(4507388..4508779) Pseudomonas putida KT2440 1046563 NP_746130.1 CDS serS NC_002947.3 4508780 4510060 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(4508780..4510060) Pseudomonas putida KT2440 1046562 NP_746131.1 CDS crcB NC_002947.3 4510091 4510465 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(4510091..4510465) Pseudomonas putida KT2440 1046561 NP_746132.1 CDS PP_4002 NC_002947.3 4510462 4511787 R similar to GP:9948679; identified by sequence similarity; recombination factor protein RarA complement(4510462..4511787) Pseudomonas putida KT2440 1046560 NP_746133.1 CDS lolA NC_002947.3 4511800 4512486 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(4511800..4512486) Pseudomonas putida KT2440 1046559 NP_746134.1 CDS ftsK NC_002947.3 4512486 4514990 R similar to GP:4063380, GB:L07807, GB:L07810, GB:L07808, GB:L07809, SP:Q05193, PID:181849, and PID:181851; identified by sequence similarity; DNA translocase FtsK complement(4512486..4514990) Pseudomonas putida KT2440 1046558 NP_746135.1 CDS aat NC_002947.3 4515398 4516078 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 4515398..4516078 Pseudomonas putida KT2440 1046557 NP_746136.1 CDS PP_4006 NC_002947.3 4516135 4516842 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 4516135..4516842 Pseudomonas putida KT2440 1046556 NP_746137.1 CDS infA NC_002947.3 4516944 4517162 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4516944..4517162 Pseudomonas putida KT2440 1046554 NP_746138.1 CDS clpA NC_002947.3 4517248 4519518 R similar to GB:J03490, SP:P09622, PID:1339989, PID:181575, and PID:307137; identified by sequence similarity; ATP-dependent Clp protease ATP-binding subunit ClpA complement(4517248..4519518) Pseudomonas putida KT2440 1046551 NP_746139.1 CDS clpS NC_002947.3 4519549 4519911 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(4519549..4519911) Pseudomonas putida KT2440 1046550 NP_746140.1 CDS cspD NC_002947.3 4520142 4520408 D identified by match to PFAM protein family HMM PF00313; cold-shock protein CspD 4520142..4520408 Pseudomonas putida KT2440 1046549 NP_746141.1 CDS icd NC_002947.3 4520480 4521736 R identified by match to TIGR protein family HMM TIGR00183; isocitrate dehydrogenase complement(4520480..4521736) Pseudomonas putida KT2440 1046548 NP_746142.1 CDS PP_4012 NC_002947.3 4522151 4524376 D identified by match to PFAM protein family HMM PF03971; isocitrate dehydrogenase 4522151..4524376 Pseudomonas putida KT2440 1046547 NP_746143.1 CDS PP_4013 NC_002947.3 4524568 4525008 D similar to SP:P27506, and PID:43908; identified by sequence similarity; NUDIX hydrolase 4524568..4525008 Pseudomonas putida KT2440 1046545 NP_746144.1 CDS mnmA NC_002947.3 4525068 4526192 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4525068..4526192 Pseudomonas putida KT2440 1046544 NP_746145.1 CDS PP_4015 NC_002947.3 4526189 4526815 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 4526189..4526815 Pseudomonas putida KT2440 1046543 NP_746146.1 CDS purB NC_002947.3 4526953 4528323 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4526953..4528323 Pseudomonas putida KT2440 1046542 NP_746147.1 CDS PP_4017 NC_002947.3 4528399 4529571 D cupin 4528399..4529571 Pseudomonas putida KT2440 1046540 NP_746148.1 CDS PP_4018 NC_002947.3 4529564 4529992 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 4529564..4529992 Pseudomonas putida KT2440 1046539 NP_746149.1 CDS topB NC_002947.3 4530160 4532121 D decatenates replicating daughter chromosomes; DNA topoisomerase III 4530160..4532121 Pseudomonas putida KT2440 1046538 NP_746150.1 CDS PP_4020 NC_002947.3 4532267 4533556 D similar to GP:9951625; identified by sequence similarity; FAD dependent oxidoreductase 4532267..4533556 Pseudomonas putida KT2440 1046536 NP_746151.1 CDS est NC_002947.3 4533729 4534559 D similar to GB:U07989, SP:P01596, SP:P01602, SP:P01604, SP:P01834, PID:1335148, PID:1619960, PID:185945, PID:185947, PID:185949, PID:468243, PID:470602, PID:470608, PID:470612, PID:561696, PID:561705, PID:563650, PID:619427, PID:619601, PID:619602, PID:619613, PID:619615, PID:619616, PID:632988, PID:642582, PID:663000, PID:663001, PID:722576, PID:758085, PID:762937, PID:790811, PID:860994, PID:896278, GB:U07989, SP:P01596, SP:P01602, SP:P01604, SP:P01834, PID:1335148, PID:1619960, PID:185945, PID:185947, PID:185949, PID:468243, PID:470602, PID:470608, PID:470612, PID:561696, PID:561705, PID:563650, PID:619427, PID:619601, PID:619602, PID:619613, PID:619615, PID:619616, PID:632988, PID:642582, PID:663000, PID:663001, PID:722576, PID:758085, PID:762937, PID:790811, PID:860994, and PID:896278; identified by sequence similarity; alpha/beta hydrolase 4533729..4534559 Pseudomonas putida KT2440 1046534 NP_746152.1 CDS PP_4022 NC_002947.3 4534679 4535470 D hypothetical protein 4534679..4535470 Pseudomonas putida KT2440 1042064 NP_746153.1 CDS PP_4024 NC_002947.3 4536285 4536644 D similar to GP:5824138, and GP:8572709; identified by sequence similarity; ISPpu15, transposase Orf1 4536285..4536644 Pseudomonas putida KT2440 1042061 NP_746154.1 CDS PP_4025 NC_002947.3 4536663 4538195 D similar to GP:8037785, and GP:8037785; identified by sequence similarity; ISPpu15, transposase Orf2 4536663..4538195 Pseudomonas putida KT2440 1042069 NP_746155.1 CDS PP_4027 NC_002947.3 4538515 4539288 D hypothetical protein 4538515..4539288 Pseudomonas putida KT2440 1042075 NP_746156.1 CDS PP_4028 NC_002947.3 4539270 4539374 R hypothetical protein complement(4539270..4539374) Pseudomonas putida KT2440 1042063 NP_746157.1 CDS nudC NC_002947.3 4539451 4540281 R can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase complement(4539451..4540281) Pseudomonas putida KT2440 1042077 NP_746158.1 CDS PP_4030 NC_002947.3 4540318 4541160 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4540318..4541160) Pseudomonas putida KT2440 1046269 NP_746159.1 CDS nhaB NC_002947.3 4541281 4542783 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 4541281..4542783 Pseudomonas putida KT2440 1042065 NP_746160.1 CDS PP_4032 NC_002947.3 4542930 4543475 D outer membrane lipoprotein Blc 4542930..4543475 Pseudomonas putida KT2440 1044123 NP_746161.1 CDS PP_4033 NC_002947.3 4543563 4544522 D similar to GB:X14831, GB:J03858, GB:S71326, GB:M76741, GB:M76742, GB:M76743, GB:M76744, GB:D12502, GB:M72238, GB:D90311, GB:D90313, SP:P13688, PID:179435, PID:179437, PID:219499, and PID:219501; identified by sequence similarity; ribonuclease Z 4543563..4544522 Pseudomonas putida KT2440 1043330 NP_746162.1 CDS PP_4034 NC_002947.3 4544519 4545802 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(4544519..4545802) Pseudomonas putida KT2440 1042080 NP_746163.1 CDS PP_4035 NC_002947.3 4545852 4547342 R identified by match to PFAM protein family HMM PF03596; NCS1 nucleoside transporter complement(4545852..4547342) Pseudomonas putida KT2440 1045385 NP_746164.1 CDS PP_4037 NC_002947.3 4549261 4550628 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 4549261..4550628 Pseudomonas putida KT2440 1042092 NP_746165.1 CDS PP_4038 NC_002947.3 4550629 4551903 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 4550629..4551903 Pseudomonas putida KT2440 1042076 NP_746166.1 CDS PP_4040 NC_002947.3 4552703 4553059 R similar to GP:2565356; identified by sequence similarity; glyoxalase/bleomycin resistance protein/dioxygenase complement(4552703..4553059) Pseudomonas putida KT2440 1042096 NP_746167.1 CDS PP_4041 NC_002947.3 4553126 4555006 R similar to GP:6117873, and GP:6117873; identified by sequence similarity; glycoside hydrolase 15-like protein complement(4553126..4555006) Pseudomonas putida KT2440 1042162 NP_746168.1 CDS zwf-2 NC_002947.3 4554988 4556493 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(4554988..4556493) Pseudomonas putida KT2440 1042100 NP_746169.1 CDS gnd NC_002947.3 4556490 4557473 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(4556490..4557473) Pseudomonas putida KT2440 1042095 NP_746170.1 CDS PP_4044 NC_002947.3 4557640 4557843 D hypothetical protein 4557640..4557843 Pseudomonas putida KT2440 1042106 NP_746171.1 CDS PP_4045 NC_002947.3 4557886 4558152 R hypothetical protein complement(4557886..4558152) Pseudomonas putida KT2440 1042110 NP_746172.1 CDS PP_4046 NC_002947.3 4558198 4559160 R hypothetical protein complement(4558198..4559160) Pseudomonas putida KT2440 1042107 NP_746173.1 CDS PP_4047 NC_002947.3 4559176 4560132 R hypothetical protein complement(4559176..4560132) Pseudomonas putida KT2440 1042102 NP_746174.1 CDS PP_4048 NC_002947.3 4560142 4561665 R hypothetical protein complement(4560142..4561665) Pseudomonas putida KT2440 1042687 NP_746175.1 CDS vgrG-3 NC_002947.3 4561542 4563857 R similar to GP:2920640; identified by sequence similarity; vgrG protein complement(4561542..4563857) Pseudomonas putida KT2440 1041595 NP_746176.1 CDS glgA NC_002947.3 4564755 4566314 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 4564755..4566314 Pseudomonas putida KT2440 1042113 NP_746177.1 CDS PP_4051 NC_002947.3 4566329 4568071 D identified by match to PFAM protein family HMM PF02922; malto-oligosyltrehalose trehalohydrolase 4566329..4568071 Pseudomonas putida KT2440 1042111 NP_746178.1 CDS malQ NC_002947.3 4568068 4570137 D similar to GB:X12597, GB:L13805, SP:P09429, PID:1435197, PID:32327, and PID:968888; identified by sequence similarity; 4-alpha-glucanotransferase 4568068..4570137 Pseudomonas putida KT2440 1042127 NP_746179.1 CDS PP_4053 NC_002947.3 4570134 4572908 D identified by match to PFAM protein family HMM PF00128; malto-oligosyltrehalose synthase 4570134..4572908 Pseudomonas putida KT2440 1042120 NP_746180.1 CDS PP_4054 NC_002947.3 4572905 4573189 D hypothetical protein 4572905..4573189 Pseudomonas putida KT2440 1042129 NP_746181.1 CDS glgX NC_002947.3 4573326 4575479 D identified by match to PFAM protein family HMM PF02922; glycogen debranching protein GlgX 4573326..4575479 Pseudomonas putida KT2440 1042124 NP_746182.1 CDS PP_4056 NC_002947.3 4575601 4576395 D identified by match to PFAM protein family HMM PF03372; hypothetical protein 4575601..4576395 Pseudomonas putida KT2440 1042134 NP_746183.1 CDS PP_4057 NC_002947.3 4576619 4577788 D identified by match to TIGR protein family HMM TIGR01414; outer membrane autotransporter 4576619..4577788 Pseudomonas putida KT2440 1042122 NP_746184.1 CDS glgB NC_002947.3 4577897 4580107 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(4577897..4580107) Pseudomonas putida KT2440 1044393 NP_746185.1 CDS PP_4059 NC_002947.3 4580104 4583424 R similar to GP:1536814; identified by sequence similarity; trehalose synthase complement(4580104..4583424) Pseudomonas putida KT2440 1042130 NP_746186.1 CDS PP_4060 NC_002947.3 4583595 4585580 R identified by match to PFAM protein family HMM PF00128; alpha-amylase complement(4583595..4585580) Pseudomonas putida KT2440 1042139 NP_746187.1 CDS PP_4061 NC_002947.3 4585753 4585914 D hypothetical protein 4585753..4585914 Pseudomonas putida KT2440 1042142 NP_746188.1 CDS PP_4062 NC_002947.3 4585911 4586009 R hypothetical protein complement(4585911..4586009) Pseudomonas putida KT2440 1042141 NP_746189.1 CDS PP_4063 NC_002947.3 4586129 4587811 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(4586129..4587811) Pseudomonas putida KT2440 1042136 NP_746190.1 CDS ivd NC_002947.3 4588022 4589296 D similar to SP:P18812; identified by sequence similarity; acyl-CoA dehydrogenase 4588022..4589296 Pseudomonas putida KT2440 1042152 NP_746191.1 CDS PP_4065 NC_002947.3 4589316 4590923 D similar to GP:10934059; identified by sequence similarity; propionyl-CoA carboxylase 4589316..4590923 Pseudomonas putida KT2440 1042156 NP_746192.1 CDS PP_4066 NC_002947.3 4590927 4591742 D catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase 4590927..4591742 Pseudomonas putida KT2440 1041856 NP_746193.1 CDS PP_4067 NC_002947.3 4591739 4593691 D identified by match to TIGR protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 4591739..4593691 Pseudomonas putida KT2440 1042147 NP_746194.1 CDS PP_4068 NC_002947.3 4593990 4594694 R similar to GP:1469215; identified by sequence similarity; Cro/CI family transcriptional regulator complement(4593990..4594694) Pseudomonas putida KT2440 1045706 NP_746195.1 CDS PP_4069 NC_002947.3 4594782 4595081 D hypothetical protein 4594782..4595081 Pseudomonas putida KT2440 1042155 NP_746196.1 CDS PP_4070 NC_002947.3 4595530 4596045 D hypothetical protein 4595530..4596045 Pseudomonas putida KT2440 1042166 NP_746197.1 CDS PP_4071 NC_002947.3 4596179 4599805 R hypothetical protein complement(4596179..4599805) Pseudomonas putida KT2440 1042157 NP_746198.1 CDS PP_4072 NC_002947.3 4599802 4601268 R hypothetical protein complement(4599802..4601268) Pseudomonas putida KT2440 1042170 NP_746199.1 CDS PP_4073 NC_002947.3 4601256 4601888 R similar to GP:9657505; identified by sequence similarity; hypothetical protein complement(4601256..4601888) Pseudomonas putida KT2440 1041609 NP_746200.1 CDS PP_4074 NC_002947.3 4602163 4602666 D hypothetical protein 4602163..4602666 Pseudomonas putida KT2440 1042165 NP_746201.1 CDS PP_4076 NC_002947.3 4604168 4604578 D hypothetical protein 4604168..4604578 Pseudomonas putida KT2440 1042173 NP_746202.1 CDS PP_4077 NC_002947.3 4604582 4606348 D hypothetical protein 4604582..4606348 Pseudomonas putida KT2440 1042174 NP_746203.1 CDS PP_4078 NC_002947.3 4606312 4607328 D hypothetical protein 4606312..4607328 Pseudomonas putida KT2440 1042176 NP_746204.1 CDS PP_4079 NC_002947.3 4607325 4608122 D similar to GP:9657500; identified by sequence similarity; hypothetical protein 4607325..4608122 Pseudomonas putida KT2440 1046066 NP_746205.1 CDS PP_4080 NC_002947.3 4608172 4609509 D hypothetical protein 4608172..4609509 Pseudomonas putida KT2440 1042171 NP_746206.1 CDS PP_4081 NC_002947.3 4609454 4610386 D hypothetical protein 4609454..4610386 Pseudomonas putida KT2440 1042180 NP_746207.1 CDS hcp-2 NC_002947.3 4610520 4611035 D similar to GP:2920641; identified by sequence similarity; hcp protein 4610520..4611035 Pseudomonas putida KT2440 1042181 NP_746208.1 CDS PP_4084 NC_002947.3 4613142 4613573 D hypothetical protein 4613142..4613573 Pseudomonas putida KT2440 1042186 NP_746209.1 CDS PP_4085 NC_002947.3 4613627 4618219 D similar to GP:2920634; identified by sequence similarity; RHS family protein 4613627..4618219 Pseudomonas putida KT2440 1042182 NP_746210.1 CDS PP_4086 NC_002947.3 4619477 4620040 R hypothetical protein complement(4619477..4620040) Pseudomonas putida KT2440 1042191 NP_746211.1 CDS PP_4087 NC_002947.3 4620241 4620393 D hypothetical protein 4620241..4620393 Pseudomonas putida KT2440 1042184 NP_746212.1 CDS PP_4091 NC_002947.3 4625967 4627499 R similar to GP:8037785, and GP:8037785; identified by sequence similarity; ISPpu15, transposase Orf2 complement(4625967..4627499) Pseudomonas putida KT2440 1042205 NP_746213.1 CDS PP_4092 NC_002947.3 4627518 4627877 R similar to GP:5824138, and GP:8572709; identified by sequence similarity; ISPpu15, transposase Orf1 complement(4627518..4627877) Pseudomonas putida KT2440 1045296 NP_746214.1 CDS PP_4094 NC_002947.3 4629737 4630222 D similar to SP:P23761, PID:296728, PID:58350, SP:P23761, PID:296728, and PID:58350; identified by sequence similarity; hypothetical protein 4629737..4630222 Pseudomonas putida KT2440 1042198 NP_746215.1 CDS PP_4095 NC_002947.3 4631078 4631353 D similar to GP:8247754, SP:P25897, GB:D10986, and PID:217130; identified by sequence similarity; hypothetical protein 4631078..4631353 Pseudomonas putida KT2440 1042213 NP_746216.1 CDS PP_4096 NC_002947.3 4631657 4632391 D similar to GP:9946890; identified by sequence similarity; hypothetical protein 4631657..4632391 Pseudomonas putida KT2440 1042211 NP_746217.1 CDS pgsA NC_002947.3 4632689 4633249 R similar to SP:P06978; identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(4632689..4633249) Pseudomonas putida KT2440 1042207 NP_746218.1 CDS uvrC NC_002947.3 4633283 4635106 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(4633283..4635106) Pseudomonas putida KT2440 1042204 NP_746219.1 CDS gacA NC_002947.3 4635113 4635751 R similar to GP:3142729, GB:X51405, SP:P16870, and PID:29667; identified by sequence similarity; DNA-binding response regulator GacA complement(4635113..4635751) Pseudomonas putida KT2440 1042216 NP_746220.1 CDS PP_4100 NC_002947.3 4635815 4636204 R similar to SP:P21232, GB:M36726, SP:P21232, and GB:M36726; identified by sequence similarity; Cro/CI family transcriptional regulator complement(4635815..4636204) Pseudomonas putida KT2440 1042218 NP_746221.1 CDS PP_4101 NC_002947.3 4636312 4636755 R identified by match to PFAM protein family HMM PF00583; acetyltransferase complement(4636312..4636755) Pseudomonas putida KT2440 1042209 NP_746222.1 CDS PP_4102 NC_002947.3 4636766 4637152 R hypothetical protein complement(4636766..4637152) Pseudomonas putida KT2440 1042232 NP_746223.1 CDS PP_4103 NC_002947.3 4637281 4638897 D identified by match to PFAM protein family HMM PF01384; phosphate transporter 4637281..4638897 Pseudomonas putida KT2440 1042215 NP_746224.1 CDS PP_4104 NC_002947.3 4639078 4639773 R similar to GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, PID:532595, GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, PID:532595, GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, PID:532595, GB:M64983, GB:J00129, GB:M26877, GB:M26876, GB:J00131, GB:J00130, SP:P02675, PID:182430, PID:182435, PID:31401, PID:484509, and PID:532595; identified by sequence similarity; glutathione S-transferase complement(4639078..4639773) Pseudomonas putida KT2440 1042226 NP_746225.1 CDS PP_4105 NC_002947.3 4639861 4640358 R similar to GP:2815353, and GP:2815353; identified by sequence similarity; hypothetical protein complement(4639861..4640358) Pseudomonas putida KT2440 1042221 NP_746226.1 CDS gabP NC_002947.3 4640416 4641798 R identified by match to PFAM protein family HMM PF00324; amino acid ABC transporter permease complement(4640416..4641798) Pseudomonas putida KT2440 1042234 NP_746227.1 CDS PP_4107 NC_002947.3 4642054 4642950 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4642054..4642950 Pseudomonas putida KT2440 1042233 NP_746228.1 CDS PP_4108 NC_002947.3 4643130 4644380 D identified by match to TIGR protein family HMM TIGR00700; class III aminotransferase 4643130..4644380 Pseudomonas putida KT2440 1042236 NP_746229.1 CDS PP_4109 NC_002947.3 4644384 4644686 R hypothetical protein complement(4644384..4644686) Pseudomonas putida KT2440 1042228 NP_746230.1 CDS PP_4110 NC_002947.3 4644755 4645510 R hypothetical protein complement(4644755..4645510) Pseudomonas putida KT2440 1045195 NP_746231.1 CDS fusA NC_002947.3 4645431 4647542 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4645431..4647542 Pseudomonas putida KT2440 1042244 NP_746232.1 CDS PP_4113 NC_002947.3 4649201 4650910 R identified by match to PFAM protein family HMM PF00082; hypothetical protein complement(4649201..4650910) Pseudomonas putida KT2440 1042241 NP_746233.1 CDS PP_4114 NC_002947.3 4650964 4652139 R hypothetical protein complement(4650964..4652139) Pseudomonas putida KT2440 1042256 NP_746234.1 CDS PP_4115 NC_002947.3 4652226 4653029 D similar to GP:9948700; identified by sequence similarity; NolW domain-containing protein 4652226..4653029 Pseudomonas putida KT2440 1041900 NP_746235.1 CDS aceA NC_002947.3 4653520 4654845 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4653520..4654845 Pseudomonas putida KT2440 1042253 NP_746236.1 CDS PP_4117 NC_002947.3 4654903 4655085 R hypothetical protein complement(4654903..4655085) Pseudomonas putida KT2440 1046072 NP_746237.1 CDS PP_4118 NC_002947.3 4655103 4655798 D similar to GP:9658122; identified by sequence similarity; hypothetical protein 4655103..4655798 Pseudomonas putida KT2440 1042264 NP_746238.1 CDS nuoA NC_002947.3 4656182 4656595 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 4656182..4656595 Pseudomonas putida KT2440 1041621 NP_746239.1 CDS nuoB NC_002947.3 4656605 4657282 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 4656605..4657282 Pseudomonas putida KT2440 1042262 NP_746240.1 CDS nuoCD NC_002947.3 4657362 4659143 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 4657362..4659143 Pseudomonas putida KT2440 1042260 NP_746241.1 CDS nuoE NC_002947.3 4659146 4659643 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 4659146..4659643 Pseudomonas putida KT2440 1042274 NP_746242.1 CDS nuoF NC_002947.3 4659640 4661001 D shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 4659640..4661001 Pseudomonas putida KT2440 1045401 NP_746243.1 CDS nuoG NC_002947.3 4661134 4663848 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 4661134..4663848 Pseudomonas putida KT2440 1042269 NP_746244.1 CDS nuoH NC_002947.3 4663845 4664852 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 4663845..4664852 Pseudomonas putida KT2440 1042266 NP_746245.1 CDS nuoI NC_002947.3 4664864 4665412 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 4664864..4665412 Pseudomonas putida KT2440 1042277 NP_746246.1 CDS nuoJ NC_002947.3 4665423 4665923 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 4665423..4665923 Pseudomonas putida KT2440 1042270 NP_746247.1 CDS nouK NC_002947.3 4665927 4666235 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 4665927..4666235 Pseudomonas putida KT2440 1042272 NP_746248.1 CDS nuoL NC_002947.3 4666232 4668085 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 4666232..4668085 Pseudomonas putida KT2440 1042283 NP_746249.1 CDS nuoM NC_002947.3 4668126 4669658 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 4668126..4669658 Pseudomonas putida KT2440 1042273 NP_746250.1 CDS nuoN NC_002947.3 4669666 4671135 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 4669666..4671135 Pseudomonas putida KT2440 1042285 NP_746251.1 CDS PP_4132 NC_002947.3 4671226 4671489 R similar to GP:4063808, and GP:4063808; identified by sequence similarity; hypothetical protein complement(4671226..4671489) Pseudomonas putida KT2440 1042280 NP_746252.1 CDS PP_4133 NC_002947.3 4671669 4672046 D similar to GP:14804; identified by sequence similarity; transcriptional regulator-like protein 4671669..4672046 Pseudomonas putida KT2440 1042295 NP_746253.1 CDS PP_4134 NC_002947.3 4672043 4672405 R similar to GP:4063781, and GP:4063781; identified by sequence similarity; hypothetical protein complement(4672043..4672405) Pseudomonas putida KT2440 1042294 NP_746254.1 CDS PP_4135 NC_002947.3 4672398 4672745 R hypothetical protein complement(4672398..4672745) Pseudomonas putida KT2440 1042292 NP_746255.1 CDS PP_4136 NC_002947.3 4672757 4673005 R similar to GB:M19961, GB:M59250, SP:P10606, PID:1679628, PID:180937, and PID:180941; identified by sequence similarity; LuxR family transcriptional regulator complement(4672757..4673005) Pseudomonas putida KT2440 1042291 NP_746256.1 CDS PP_4137 NC_002947.3 4673226 4675298 D similar to GP:3925407, SP:P00960, GB:J01622, PID:146222, PID:146225, PID:466698, GB:U00096, and PID:1789983; identified by sequence similarity; outer membrane siderophore receptor 4673226..4675298 Pseudomonas putida KT2440 1042629 NP_746257.1 CDS PP_4138 NC_002947.3 4675402 4675962 R identified by match to PFAM protein family HMM PF03358; NADPH-dependent FMN reductase complement(4675402..4675962) Pseudomonas putida KT2440 1042299 NP_746258.1 CDS PP_4139 NC_002947.3 4676119 4676337 D hypothetical protein 4676119..4676337 Pseudomonas putida KT2440 1042074 NP_746259.1 CDS dnaQ NC_002947.3 4678699 4679457 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(4678699..4679457) Pseudomonas putida KT2440 1045677 NP_746260.1 CDS rnhA NC_002947.3 4679508 4679954 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(4679508..4679954) Pseudomonas putida KT2440 1045672 NP_746261.1 CDS PP_4143 NC_002947.3 4679970 4680770 R similar to GP:9947799; identified by sequence similarity; hypothetical protein complement(4679970..4680770) Pseudomonas putida KT2440 1042306 NP_746262.1 CDS gloB NC_002947.3 4680829 4681608 D similar to GB:M88458, SP:P33947, and PID:31218; identified by sequence similarity; hydroxyacylglutathione hydrolase 4680829..4681608 Pseudomonas putida KT2440 1042304 NP_746263.1 CDS mltD NC_002947.3 4681709 4683139 D identified by match to PFAM protein family HMM PF01464; lytic murein transglycosylase D 4681709..4683139 Pseudomonas putida KT2440 1042314 NP_746264.1 CDS PP_4146 NC_002947.3 4683360 4685189 D identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 4683360..4685189 Pseudomonas putida KT2440 1042310 NP_746265.1 CDS PP_4147 NC_002947.3 4685186 4687021 D identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 4685186..4687021 Pseudomonas putida KT2440 1042316 NP_746266.1 CDS PP_4148 NC_002947.3 4687023 4688096 D identified by match to PFAM protein family HMM PF03626; binding-protein-dependent transport system inner membrane protein 4687023..4688096 Pseudomonas putida KT2440 1042320 NP_746267.1 CDS PP_4149 NC_002947.3 4688098 4689117 D identified by match to TIGR protein family HMM TIGR01726; binding-protein-dependent transport system inner membrane protein 4688098..4689117 Pseudomonas putida KT2440 1042308 NP_746268.1 CDS PP_4150 NC_002947.3 4689119 4690723 D identified by match to TIGR protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein 4689119..4690723 Pseudomonas putida KT2440 1042321 NP_746269.1 CDS PP_4151 NC_002947.3 4690865 4691338 D similar to GP:3378297; identified by sequence similarity; excisionase 4690865..4691338 Pseudomonas putida KT2440 1042318 NP_746270.1 CDS PP_4152 NC_002947.3 4691335 4691910 D similar to GP:3378296, and GP:3378296; identified by sequence similarity; hypothetical protein 4691335..4691910 Pseudomonas putida KT2440 1042326 NP_746271.1 CDS PP_4153 NC_002947.3 4692034 4692240 R hypothetical protein complement(4692034..4692240) Pseudomonas putida KT2440 1042312 NP_746272.1 CDS PP_4154 NC_002947.3 4692322 4695054 D similar to GP:6403506; identified by sequence similarity; hypothetical protein 4692322..4695054 Pseudomonas putida KT2440 1042319 NP_746273.1 CDS PP_4155 NC_002947.3 4695058 4696281 R similar to GP:6946683; identified by sequence similarity; hypothetical protein complement(4695058..4696281) Pseudomonas putida KT2440 1042327 NP_746274.1 CDS PP_4156 NC_002947.3 4696372 4697277 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 4696372..4697277 Pseudomonas putida KT2440 1042332 NP_746275.1 CDS kdpE NC_002947.3 4697339 4698034 R similar to GP:9947605; identified by sequence similarity; winged helix family two component transcriptional regulator complement(4697339..4698034) Pseudomonas putida KT2440 1042343 NP_746276.1 CDS kdpD NC_002947.3 4698031 4700685 R similar to GP:9947604, and GP:9947604; identified by sequence similarity; osmosensitive K+ channel signal transduction histidine kinase complement(4698031..4700685) Pseudomonas putida KT2440 1042335 NP_746277.1 CDS kdpC NC_002947.3 4700835 4701392 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(4700835..4701392) Pseudomonas putida KT2440 1042354 NP_746278.1 CDS kdpA NC_002947.3 4703468 4705162 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(4703468..4705162) Pseudomonas putida KT2440 1042353 NP_746279.1 CDS PP_4162 NC_002947.3 4705438 4706490 R similar to GP:9947592; identified by sequence similarity; hypothetical protein complement(4705438..4706490) Pseudomonas putida KT2440 1042355 NP_746280.1 CDS PP_4163 NC_002947.3 4706503 4707297 R similar to GP:9947591; identified by sequence similarity; hypothetical protein complement(4706503..4707297) Pseudomonas putida KT2440 1042348 NP_746281.1 CDS PP_4164 NC_002947.3 4707407 4708261 R identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase complement(4707407..4708261) Pseudomonas putida KT2440 1042361 NP_746282.1 CDS PP_4165 NC_002947.3 4708258 4709121 R identified by match to TIGR protein family HMM TIGR01738; hypothetical protein complement(4708258..4709121) Pseudomonas putida KT2440 1041592 NP_746283.1 CDS PP_4166 NC_002947.3 4709139 4709513 R hypothetical protein complement(4709139..4709513) Pseudomonas putida KT2440 1042360 NP_746284.1 CDS sixA NC_002947.3 4709676 4710134 R identified by match to TIGR protein family HMM TIGR00249; phosphohistidine phosphatase SixA complement(4709676..4710134) Pseudomonas putida KT2440 1042359 NP_746285.1 CDS PP_4168 NC_002947.3 4710131 4710478 R similar to GP:9947581, and GP:9947581; identified by sequence similarity; hypothetical protein complement(4710131..4710478) Pseudomonas putida KT2440 1042373 NP_746286.1 CDS gpsA NC_002947.3 4710515 4711540 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4710515..4711540) Pseudomonas putida KT2440 1045902 NP_746287.1 CDS PP_4170 NC_002947.3 4711599 4711703 R hypothetical protein complement(4711599..4711703) Pseudomonas putida KT2440 1042375 NP_746288.1 CDS PP_4171 NC_002947.3 4711768 4713882 D similar to GP:9947579; identified by sequence similarity; hypothetical protein 4711768..4713882 Pseudomonas putida KT2440 1042364 NP_746289.1 CDS PP_4172 NC_002947.3 4713882 4714772 D hypothetical protein 4713882..4714772 Pseudomonas putida KT2440 1042384 NP_746290.1 CDS PP_4173 NC_002947.3 4714769 4716700 D identified by match to PFAM protein family HMM PF02518; integral membrane sensor hybrid histidine kinase 4714769..4716700 Pseudomonas putida KT2440 1042372 NP_746291.1 CDS fabA NC_002947.3 4716908 4717423 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 4716908..4717423 Pseudomonas putida KT2440 1042381 NP_746292.1 CDS fabB NC_002947.3 4717435 4718655 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4717435..4718655 Pseudomonas putida KT2440 1042370 NP_746293.1 CDS PP_4176 NC_002947.3 4718786 4719793 R similar to GP:9845030; identified by sequence similarity; amidohydrolase complement(4718786..4719793) Pseudomonas putida KT2440 1042382 NP_746294.1 CDS PP_4177 NC_002947.3 4719893 4720774 D similar to GP:4521959; identified by sequence similarity; pirin 4719893..4720774 Pseudomonas putida KT2440 1042386 NP_746295.1 CDS PP_4178 NC_002947.3 4720869 4721594 R similar to GB:M14949, GB:M14948, SP:P10301, and PID:190936; identified by sequence similarity; dienelactone hydrolase complement(4720869..4721594) Pseudomonas putida KT2440 1042374 NP_746296.1 CDS htpG NC_002947.3 4721658 4723562 R molecular chaperone; heat shock protein 90 complement(4721658..4723562) Pseudomonas putida KT2440 1042393 NP_746297.1 CDS PP_4180 NC_002947.3 4723632 4724114 R identified by match to TIGR protein family HMM TIGR00369; thioesterase complement(4723632..4724114) Pseudomonas putida KT2440 1042397 NP_746298.1 CDS PP_4181 NC_002947.3 4724111 4724587 R identified by match to TIGR protein family HMM TIGR00369; thioesterase complement(4724111..4724587) Pseudomonas putida KT2440 1042388 NP_746299.1 CDS PP_4182 NC_002947.3 4724712 4725095 R identified by match to PFAM protein family HMM PF01925; hypothetical protein complement(4724712..4725095) Pseudomonas putida KT2440 1041915 NP_746300.1 CDS PP_4183 NC_002947.3 4725082 4725831 R similar to GP:9947555, and GP:9947555; identified by sequence similarity; hypothetical protein complement(4725082..4725831) Pseudomonas putida KT2440 1042394 NP_746301.1 CDS braZ NC_002947.3 4726067 4727380 R identified by match to PFAM protein family HMM PF04138; branched-chain amino acid ABC transporter complement(4726067..4727380) Pseudomonas putida KT2440 1042407 NP_746302.1 CDS sucD NC_002947.3 4727784 4728668 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(4727784..4728668) Pseudomonas putida KT2440 1042406 NP_746303.1 CDS sucC NC_002947.3 4728668 4729834 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(4728668..4729834) Pseudomonas putida KT2440 1042414 NP_746304.1 CDS lpdG NC_002947.3 4730006 4731442 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(4730006..4731442) Pseudomonas putida KT2440 1042391 NP_746305.1 CDS kgdB NC_002947.3 4731536 4732759 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(4731536..4732759) Pseudomonas putida KT2440 1042423 NP_746306.1 CDS sucA NC_002947.3 4732802 4735633 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(4732802..4735633) Pseudomonas putida KT2440 1042413 NP_746307.1 CDS sdhB NC_002947.3 4735880 4736584 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(4735880..4736584) Pseudomonas putida KT2440 1042396 NP_746308.1 CDS sdhA NC_002947.3 4736596 4738368 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(4736596..4738368) Pseudomonas putida KT2440 1042421 NP_746309.1 CDS sdhD NC_002947.3 4738372 4738740 R similar to GB:Z11585, and PID:29936; identified by sequence similarity; succinate dehydrogenase, hydrophobic membrane anchor protein complement(4738372..4738740) Pseudomonas putida KT2440 1042613 NP_746310.1 CDS sdhC NC_002947.3 4738734 4739120 R similar to GB:X63597, GB:M22616, SP:P14410, PID:338090, and PID:36645; identified by sequence similarity; succinate dehydrogenase, cytochrome b556 subunit complement(4738734..4739120) Pseudomonas putida KT2440 1042426 NP_746311.1 CDS gltA NC_002947.3 4739473 4740762 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 4739473..4740762 Pseudomonas putida KT2440 1042422 NP_746312.1 CDS PP_4195 NC_002947.3 4741516 4741770 R similar to SP:P58040; identified by sequence similarity; hypothetical protein complement(4741516..4741770) Pseudomonas putida KT2440 1042433 NP_746313.1 CDS PP_4196 NC_002947.3 4741900 4742334 R similar to GP:9948985; identified by sequence similarity; hypothetical protein complement(4741900..4742334) Pseudomonas putida KT2440 1045698 NP_746314.1 CDS PP_4197 NC_002947.3 4742399 4743991 R similar to GP:9948989; identified by sequence similarity; GntR family transcriptional regulator complement(4742399..4743991) Pseudomonas putida KT2440 1043480 NP_746315.1 CDS PP_4198 NC_002947.3 4744013 4744825 R identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein complement(4744013..4744825) Pseudomonas putida KT2440 1044900 NP_746316.1 CDS PP_4199 NC_002947.3 4744822 4745175 R similar to GP:9948993; identified by sequence similarity; lipoprotein complement(4744822..4745175) Pseudomonas putida KT2440 1042428 NP_746317.1 CDS PP_4200 NC_002947.3 4745185 4746006 R similar to GP:9948994; identified by sequence similarity; hypothetical protein complement(4745185..4746006) Pseudomonas putida KT2440 1042442 NP_746318.1 CDS PP_4201 NC_002947.3 4746082 4747011 R similar to SP:P38974; identified by sequence similarity; electron transfer flavoprotein subunit alpha complement(4746082..4747011) Pseudomonas putida KT2440 1042459 NP_746319.1 CDS PP_4202 NC_002947.3 4747012 4747761 R similar to GB:D90359, GB:M73442, GB:M73444, GB:X07024, SP:P21675, and PID:29733; identified by sequence similarity; electron transfer flavoprotein subunit beta complement(4747012..4747761) Pseudomonas putida KT2440 1042448 NP_746320.1 CDS PP_4203 NC_002947.3 4748297 4749979 D identified by match to PFAM protein family HMM PF03545; electron-transferring-flavoprotein dehydrogenase 4748297..4749979 Pseudomonas putida KT2440 1042462 NP_746321.1 CDS PP_4204 NC_002947.3 4750051 4750452 R similar to GP:4186112; identified by sequence similarity; Cro/CI family transcriptional regulator complement(4750051..4750452) Pseudomonas putida KT2440 1045241 NP_746322.1 CDS PP_4205 NC_002947.3 4750455 4750751 R similar to GP:4186111, and GP:4186111; identified by sequence similarity; hypothetical protein complement(4750455..4750751) Pseudomonas putida KT2440 1042465 NP_746323.1 CDS PP_4206 NC_002947.3 4750846 4752171 R identified by match to TIGR protein family HMM TIGR00883; major facilitator family transporter complement(4750846..4752171) Pseudomonas putida KT2440 1042492 NP_746324.1 CDS PP_4207 NC_002947.3 4752244 4752723 R hypothetical protein complement(4752244..4752723) Pseudomonas putida KT2440 1045678 NP_746325.1 CDS PP_4208 NC_002947.3 4752892 4753368 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor complement(4752892..4753368) Pseudomonas putida KT2440 1042476 NP_746326.1 CDS PP_4209 NC_002947.3 4753581 4754759 D similar to GP:10764643; identified by sequence similarity; RND family efflux transporter MFP subunit 4753581..4754759 Pseudomonas putida KT2440 1042499 NP_746327.1 CDS PP_4210 NC_002947.3 4754760 4756724 D identified by match to TIGR protein family HMM TIGR01740; ABC transporter ATP-binding protein 4754760..4756724 Pseudomonas putida KT2440 1042503 NP_746328.1 CDS PP_4211 NC_002947.3 4756728 4758140 D identified by match to PFAM protein family HMM PF02321; RND efflux transporter 4756728..4758140 Pseudomonas putida KT2440 1045923 NP_746329.1 CDS PP_4212 NC_002947.3 4758161 4759783 R identified by match to TIGR protein family HMM TIGR01409; hypothetical protein complement(4758161..4759783) Pseudomonas putida KT2440 1042521 NP_746330.1 CDS PP_4213 NC_002947.3 4759939 4761327 D identified by match to PFAM protein family HMM PF01244; dipeptidase 4759939..4761327 Pseudomonas putida KT2440 1042502 NP_746331.1 CDS PP_4214 NC_002947.3 4761342 4762628 D identified by match to TIGR protein family HMM TIGR01409; class V aminotransferase 4761342..4762628 Pseudomonas putida KT2440 1042524 NP_746332.1 CDS PP_4215 NC_002947.3 4762663 4763568 D identified by match to PFAM protein family HMM PF03781; hypothetical protein 4762663..4763568 Pseudomonas putida KT2440 1042529 NP_746333.1 CDS pvdE NC_002947.3 4763603 4765261 D similar to GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; cyclic peptide transporter 4763603..4765261 Pseudomonas putida KT2440 1042520 NP_746334.1 CDS fpvA NC_002947.3 4765348 4767786 D similar to GB:M29874, GB:M29873, SP:P20813, and PID:181294; identified by sequence similarity; outer membrane ferripyoverdine receptor 4765348..4767786 Pseudomonas putida KT2440 1042530 NP_746335.1 CDS PP_4218 NC_002947.3 4767855 4768811 R similar to GB:U08997, GB:X66310, GB:X53144, GB:X53147, SP:P00367, SP:P49448, PID:31815, PID:478988, and PID:579924; identified by sequence similarity; lipase/esterase complement(4767855..4768811) Pseudomonas putida KT2440 1042532 NP_746336.1 CDS ppsD NC_002947.3 4768854 4779266 R identified by match to TIGR protein family HMM TIGR01734; non-ribosomal siderophore peptide synthetase complement(4768854..4779266) Pseudomonas putida KT2440 1042489 NP_746337.1 CDS PP_4220 NC_002947.3 4779427 4787313 R similar to GP:9948469; identified by sequence similarity; non-ribosomal peptide synthetase complement(4779427..4787313) Pseudomonas putida KT2440 1042543 NP_746338.1 CDS PP_4221 NC_002947.3 4787315 4793839 R identified by match to TIGR protein family HMM TIGR01734; non-ribosomal peptide synthetase complement(4787315..4793839) Pseudomonas putida KT2440 1042549 NP_746339.1 CDS PP_4222 NC_002947.3 4793995 4794978 R similar to GB:L09228, SP:P35154, PID:410131, and GB:AL009126; identified by sequence similarity; syrP protein complement(4793995..4794978) Pseudomonas putida KT2440 1042545 NP_746340.1 CDS PP_4223 NC_002947.3 4795084 4796442 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(4795084..4796442) Pseudomonas putida KT2440 1042550 NP_746341.1 CDS PP_4224 NC_002947.3 4796660 4797982 R similar to GP:8885860, and GP:8885860; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase complement(4796660..4797982) Pseudomonas putida KT2440 1042552 NP_746342.1 CDS PP_4225 NC_002947.3 4797979 4798662 R similar to GP:8885859, and GP:8885859; identified by sequence similarity; winged helix family two component transcriptional regulator complement(4797979..4798662) Pseudomonas putida KT2440 1042555 NP_746343.1 CDS PP_4226 NC_002947.3 4798903 4799388 D hypothetical protein 4798903..4799388 Pseudomonas putida KT2440 1042565 NP_746344.1 CDS PP_4227 NC_002947.3 4799967 4800437 R hypothetical protein complement(4799967..4800437) Pseudomonas putida KT2440 1042556 NP_746345.1 CDS PP_4228 NC_002947.3 4800496 4801113 D hypothetical protein 4800496..4801113 Pseudomonas putida KT2440 1042559 NP_746346.1 CDS PP_4229 NC_002947.3 4801136 4801762 D hypothetical protein 4801136..4801762 Pseudomonas putida KT2440 1042562 NP_746347.1 CDS PP_4230 NC_002947.3 4801779 4802345 R similar to GP:6273649; identified by sequence similarity; hypothetical protein complement(4801779..4802345) Pseudomonas putida KT2440 1042570 NP_746348.1 CDS PP_4231 NC_002947.3 4802342 4803313 R identified by match to PFAM protein family HMM PF02625; xanthine dehydrogenase accessory factor complement(4802342..4803313) Pseudomonas putida KT2440 1044815 NP_746349.1 CDS PP_4232 NC_002947.3 4803317 4804528 R similar to GB:J03464, GB:Y00724, GB:X55525, GB:X03892, GB:J00114, GB:K02568, GB:M21353, GB:M21671, GB:M28985, GB:K02046, GB:M22816, GB:S98904, GB:M64229, GB:M22817, GB:M35391, GB:M21189, GB:K01078, GB:M31886, GB:S41101, GB:S59218, GB:S59211, GB:V00503, GB:X02488, SP:P08123, PID:1418930, PID:179596, PID:179603, PID:179634, PID:180394, PID:180882, PID:189685, PID:190305, PID:2078468, PID:2388555, PID:30023, PID:30102, PID:553606, and PID:825646; identified by sequence similarity; gluconate 2-dehydrogenase complement(4803317..4804528) Pseudomonas putida KT2440 1042575 NP_746350.1 CDS PP_4233 NC_002947.3 4804531 4805067 R similar to GP:2463458; identified by sequence similarity; (2Fe-2S)-binding protein complement(4804531..4805067) Pseudomonas putida KT2440 1042577 NP_746351.1 CDS dsbD-2 NC_002947.3 4808445 4810160 D identified by match to PFAM protein family HMM PF03772; protein-disulfide reductase 4808445..4810160 Pseudomonas putida KT2440 1042590 NP_746352.1 CDS PP_4236 NC_002947.3 4810160 4810996 D similar to GB:J03810, SP:P11168, and PID:307125; identified by sequence similarity; redoxin domain-containing protein 4810160..4810996 Pseudomonas putida KT2440 1042593 NP_746353.1 CDS dsbG NC_002947.3 4810998 4811756 D Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 4810998..4811756 Pseudomonas putida KT2440 1042585 NP_746354.1 CDS PP_4238 NC_002947.3 4811756 4812079 D hypothetical protein 4811756..4812079 Pseudomonas putida KT2440 1045166 NP_746355.1 CDS PP_4239 NC_002947.3 4813853 4813954 R hypothetical protein complement(4813853..4813954) Pseudomonas putida KT2440 1046168 NP_746356.1 CDS PP_4240 NC_002947.3 4814432 4815634 D similar to GB:J03930, GB:M15694, GB:M19161, GB:Y00512, GB:M31008, SP:P05187, SP:P05188, SP:P06861, SP:P09923, SP:P10696, PID:178432, PID:178442, PID:178446, PID:296631, PID:553176, PID:553177, GB:J03930, GB:M15694, GB:M19161, GB:Y00512, GB:M31008, SP:P05187, SP:P05188, SP:P06861, SP:P09923, SP:P10696, PID:178432, PID:178442, PID:178446, PID:296631, PID:553176, and PID:553177; identified by sequence similarity; microcin b17 processing protein mcbd 4814432..4815634 Pseudomonas putida KT2440 1042604 NP_746357.1 CDS PP_4241 NC_002947.3 4816806 4817033 R hypothetical protein complement(4816806..4817033) Pseudomonas putida KT2440 1043734 NP_746358.1 CDS PP_4242 NC_002947.3 4817304 4818098 D hypothetical protein 4817304..4818098 Pseudomonas putida KT2440 1042599 NP_746359.1 CDS PP_4243 NC_002947.3 4818235 4831188 R catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase complement(4818235..4831188) Pseudomonas putida KT2440 1042600 NP_746360.1 CDS pfrI NC_002947.3 4831494 4832024 D RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 4831494..4832024 Pseudomonas putida KT2440 1041651 NP_746361.1 CDS PP_4245 NC_002947.3 4832176 4832793 R similar to GP:5738527, and SP:Q9Z3Q9; identified by sequence similarity; siderophore biosynthesis protein complement(4832176..4832793) Pseudomonas putida KT2440 1042741 NP_746362.1 CDS PP_4246 NC_002947.3 4833253 4834053 R identified by match to PFAM protein family HMM PF03466; hypothetical protein complement(4833253..4834053) Pseudomonas putida KT2440 1045089 NP_746363.1 CDS PP_4247 NC_002947.3 4834225 4834776 D identified by match to PFAM protein family HMM PF00929; exonuclease 4834225..4834776 Pseudomonas putida KT2440 1046058 NP_746364.1 CDS PP_4248 NC_002947.3 4834851 4835135 D hypothetical protein 4834851..4835135 Pseudomonas putida KT2440 1041951 NP_746365.1 CDS PP_4249 NC_002947.3 4835250 4835942 R similar to GP:9947519; identified by sequence similarity; hypothetical protein complement(4835250..4835942) Pseudomonas putida KT2440 1041786 NP_746366.1 CDS ccoN-1 NC_002947.3 4835993 4837417 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4835993..4837417 Pseudomonas putida KT2440 1047010 NP_746367.1 CDS ccoO-1 NC_002947.3 4837431 4838039 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4837431..4838039 Pseudomonas putida KT2440 1041937 NP_746368.1 CDS ccoQ-1 NC_002947.3 4838045 4838239 D cytochrome c oxidase, cbb3-type, CcoQ subunit 4838045..4838239 Pseudomonas putida KT2440 1041734 NP_746369.1 CDS ccoP-1 NC_002947.3 4838236 4839177 D identified by match to TIGR protein family HMM TIGR00782; cytochrome c oxidase, cbb3-type subunit III 4838236..4839177 Pseudomonas putida KT2440 1041688 NP_746370.1 CDS PP_4254 NC_002947.3 4839357 4839632 D hypothetical protein 4839357..4839632 Pseudomonas putida KT2440 1041686 NP_746371.1 CDS ccoN-2 NC_002947.3 4839634 4841076 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4839634..4841076 Pseudomonas putida KT2440 1042804 NP_746372.1 CDS ccoO-2 NC_002947.3 4841076 4841684 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4841076..4841684 Pseudomonas putida KT2440 1041699 NP_746373.1 CDS ccoQ-2 NC_002947.3 4841690 4841881 D similar to GB:L24376, SP:P37870, PID:402363, and GB:AL009126; identified by sequence similarity; cbb3-type cytochrome oxidase subunit 4841690..4841881 Pseudomonas putida KT2440 1041967 NP_746374.1 CDS ccoP-2 NC_002947.3 4841878 4842855 D identified by match to TIGR protein family HMM TIGR00782; cytochrome c oxidase, cbb3-type subunit III 4841878..4842855 Pseudomonas putida KT2440 1041696 NP_746375.1 CDS PP_4259 NC_002947.3 4843152 4844567 D identified by match to PFAM protein family HMM PF00037; (Fe-S)-binding protein 4843152..4844567 Pseudomonas putida KT2440 1046030 NP_746376.1 CDS PP_4260 NC_002947.3 4844583 4845113 D hypothetical protein 4844583..4845113 Pseudomonas putida KT2440 1041983 NP_746377.1 CDS PP_4261 NC_002947.3 4845076 4847724 D similar to GP:9947509, GB:S70527, GB:L37374, SP:P39748, GB:X76771, and PID:642090; identified by sequence similarity; heavy metal translocating P-type ATPase 4845076..4847724 Pseudomonas putida KT2440 1041698 NP_746378.1 CDS ccoS NC_002947.3 4847703 4847918 D identified by match to PFAM protein family HMM PF03597; cbb3-type cytochrome oxidase maturation protein 4847703..4847918 Pseudomonas putida KT2440 1042369 NP_746379.1 CDS PP_4263 NC_002947.3 4847911 4848594 D similar to GP:9947507; identified by sequence similarity; hypothetical protein 4847911..4848594 Pseudomonas putida KT2440 1041800 NP_746380.1 CDS hemN NC_002947.3 4848700 4850082 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4848700..4850082 Pseudomonas putida KT2440 1041746 NP_746381.1 CDS anr NC_002947.3 4850269 4851003 D similar to GP:3220199, GB:J05200, GB:S78717, GB:M91455, GB:S77392, SP:P21817, PID:1216475, PID:337722, PID:553643, and PID:579583; identified by sequence similarity; transcriptional regulator Anr 4850269..4851003 Pseudomonas putida KT2440 1042625 NP_746382.1 CDS apt NC_002947.3 4851059 4851607 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 4851059..4851607 Pseudomonas putida KT2440 1045890 NP_746383.1 CDS recR NC_002947.3 4851726 4852328 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(4851726..4852328) Pseudomonas putida KT2440 1045230 NP_746384.1 CDS PP_4268 NC_002947.3 4852625 4852960 R identified by match to PFAM protein family HMM PF02575; hypothetical protein complement(4852625..4852960) Pseudomonas putida KT2440 1045229 NP_746385.1 CDS dnaX NC_002947.3 4853024 4855099 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(4853024..4855099) Pseudomonas putida KT2440 1041637 NP_746386.1 CDS PP_4270 NC_002947.3 4855221 4856027 D identified by match to PFAM protein family HMM PF00497; hypothetical protein 4855221..4856027 Pseudomonas putida KT2440 1046095 NP_746387.1 CDS PP_4271 NC_002947.3 4857182 4857361 D hypothetical protein 4857182..4857361 Pseudomonas putida KT2440 1042649 NP_746388.1 CDS PP_4272 NC_002947.3 4857377 4857934 R hypothetical protein complement(4857377..4857934) Pseudomonas putida KT2440 1043409 NP_746389.1 CDS PP_4273 NC_002947.3 4857949 4858368 D identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 4857949..4858368 Pseudomonas putida KT2440 1044172 NP_746390.1 CDS ligA NC_002947.3 4858718 4861048 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(4858718..4861048) Pseudomonas putida KT2440 1042621 NP_746391.1 CDS zipA NC_002947.3 4861285 4862238 R interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA complement(4861285..4862238) Pseudomonas putida KT2440 1043251 NP_746392.1 CDS PP_4276 NC_002947.3 4862383 4865871 R identified by match to PFAM protein family HMM PF02483; chromosome segregation protein SMC complement(4862383..4865871) Pseudomonas putida KT2440 1041658 NP_746393.1 CDS PP_4277 NC_002947.3 4865875 4866534 R identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator complement(4865875..4866534) Pseudomonas putida KT2440 1041639 NP_746394.1 CDS xdhA NC_002947.3 4866803 4868257 D similar to GP:2956674; identified by sequence similarity; xanthine dehydrogenase, XdhA subunit 4866803..4868257 Pseudomonas putida KT2440 1045211 NP_746395.1 CDS xdhB NC_002947.3 4868250 4870649 D identified by match to PFAM protein family HMM PF01315; xanthine dehydrogenase, XdhB subunit 4868250..4870649 Pseudomonas putida KT2440 1041885 NP_746396.1 CDS PP_4280 NC_002947.3 4870769 4871614 D similar to GP:4741723; identified by sequence similarity; xanthine dehydrogenase accessory factor XdhC 4870769..4871614 Pseudomonas putida KT2440 1041999 NP_746397.1 CDS gad NC_002947.3 4871625 4872929 D Catalyzes the deamination of guanine; guanine deaminase 4871625..4872929 Pseudomonas putida KT2440 1046094 NP_746398.1 CDS PP_4282 NC_002947.3 4872926 4873618 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(4872926..4873618) Pseudomonas putida KT2440 1041832 NP_746399.1 CDS PP_4283 NC_002947.3 4873776 4874531 R identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator complement(4873776..4874531) Pseudomonas putida KT2440 1041830 NP_746400.1 CDS PP_4284 NC_002947.3 4874812 4876161 D identified by match to PFAM protein family HMM PF04144; xanthine/uracil/vitamin C permease 4874812..4876161 Pseudomonas putida KT2440 1044702 NP_746401.1 CDS PP_4285 NC_002947.3 4876598 4876951 R transthyretin family protein complement(4876598..4876951) Pseudomonas putida KT2440 1041769 NP_746402.1 CDS PP_4286 NC_002947.3 4877351 4878277 D identified by match to PFAM protein family HMM PF01522; polysaccharide deacetylase 4877351..4878277 Pseudomonas putida KT2440 1041762 NP_746403.1 CDS PP_4287 NC_002947.3 4878277 4878792 D hypothetical protein 4878277..4878792 Pseudomonas putida KT2440 1043742 NP_746404.1 CDS PP_4288 NC_002947.3 4878842 4879345 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4878842..4879345 Pseudomonas putida KT2440 1041802 NP_746405.1 CDS PP_4289 NC_002947.3 4879390 4880730 D similar to GP:9947470; identified by sequence similarity; hypothetical protein 4879390..4880730 Pseudomonas putida KT2440 1041777 NP_746406.1 CDS PP_4290 NC_002947.3 4880917 4882272 D identified by match to TIGR protein family HMM TIGR00801; xanthine/uracil permease 4880917..4882272 Pseudomonas putida KT2440 1047014 NP_746407.1 CDS PP_4291 NC_002947.3 4882412 4883197 D similar to GP:13937484; identified by sequence similarity; hypothetical protein 4882412..4883197 Pseudomonas putida KT2440 1044649 NP_746408.1 CDS PP_4292 NC_002947.3 4883337 4883519 D hypothetical protein 4883337..4883519 Pseudomonas putida KT2440 1043318 NP_746409.1 CDS PP_4293 NC_002947.3 4883551 4884333 D similar to GP:13937484; identified by sequence similarity; hypothetical protein 4883551..4884333 Pseudomonas putida KT2440 1041773 NP_746410.1 CDS PP_4294 NC_002947.3 4884462 4885376 R identified by match to PFAM protein family HMM PF01810; hypothetical protein complement(4884462..4885376) Pseudomonas putida KT2440 1047017 NP_746411.1 CDS PP_4295 NC_002947.3 4885509 4886120 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 4885509..4886120 Pseudomonas putida KT2440 1041807 NP_746412.1 CDS PP_4296 NC_002947.3 4886243 4886683 R identified by match to PFAM protein family HMM PF03928; hypothetical protein complement(4886243..4886683) Pseudomonas putida KT2440 1044349 NP_746413.1 CDS gcl NC_002947.3 4886941 4888716 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 4886941..4888716 Pseudomonas putida KT2440 1041768 NP_746414.1 CDS hyi NC_002947.3 4888771 4889553 D similar to GB:J03799, GB:X15005, GB:S37431, GB:M14199, GB:X61156, GB:U36484, SP:P08865, PID:1125065, PID:34272, and PID:386857; identified by sequence similarity; hydroxypyruvate isomerase 4888771..4889553 Pseudomonas putida KT2440 1041767 NP_746415.1 CDS glxR NC_002947.3 4889706 4890599 D similar to SP:P23523; identified by sequence similarity; 2-hydroxy-3-oxopropionate reductase 4889706..4890599 Pseudomonas putida KT2440 1041816 NP_746416.1 CDS PP_4300 NC_002947.3 4890838 4892112 D similar to GB:L34058, SP:P55290, PID:1381790, PID:1381792, PID:506408, GB:L34058, SP:P55290, PID:1381790, PID:1381792, and PID:506408; identified by sequence similarity; hydroxypyruvate reductase 4890838..4892112 Pseudomonas putida KT2440 1044355 NP_746417.1 CDS pykF NC_002947.3 4892109 4893524 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4892109..4893524 Pseudomonas putida KT2440 1045600 NP_746418.1 CDS PP_4302 NC_002947.3 4893732 4894607 D identified by match to PFAM protein family HMM PF04186; Urea transporter 4893732..4894607 Pseudomonas putida KT2440 1041808 NP_746419.1 CDS PP_4303 NC_002947.3 4894658 4895398 R similar to GP:1070029, and GP:2950328; identified by sequence similarity; hypothetical protein complement(4894658..4895398) Pseudomonas putida KT2440 1046132 NP_746420.1 CDS PP_4304 NC_002947.3 4895545 4896366 D identified by match to PFAM protein family HMM PF00914; cation transporter voltage-gated ion channel cation transporter 4895545..4896366 Pseudomonas putida KT2440 1044638 NP_746421.1 CDS PP_4305 NC_002947.3 4896574 4897572 D similar to SP:P06997; identified by sequence similarity; sulfate ABC transporter substrate-binding protein 4896574..4897572 Pseudomonas putida KT2440 1043415 NP_746422.1 CDS PP_4306 NC_002947.3 4897586 4898542 R identified by match to PFAM protein family HMM PF03602; hypothetical protein complement(4897586..4898542) Pseudomonas putida KT2440 1042344 NP_746423.1 CDS PP_4307 NC_002947.3 4898544 4899467 R identified by match to PFAM protein family HMM PF00892; hypothetical protein complement(4898544..4899467) Pseudomonas putida KT2440 1041670 NP_746424.1 CDS PP_4308 NC_002947.3 4899601 4900038 D similar to GP:9948639; identified by sequence similarity; AsnC family transcriptional regulator 4899601..4900038 Pseudomonas putida KT2440 1041834 NP_746425.1 CDS PP_4309 NC_002947.3 4900536 4902068 D identified by match to TIGR protein family HMM TIGR00800; NCS1 nucleoside transporter 4900536..4902068 Pseudomonas putida KT2440 1043128 NP_746426.1 CDS PP_4310 NC_002947.3 4902085 4902813 D similar to GB:X03833, GB:X02851, GB:M15329, GB:X56086, SP:P01583, PID:186278, PID:186280, PID:33786, PID:33795, PID:35661, PID:755744, GB:X03833, GB:X02851, GB:M15329, GB:X56086, SP:P01583, PID:186278, PID:186280, PID:33786, PID:33795, PID:35661, and PID:755744; identified by sequence similarity; hydantoin racemase 4902085..4902813 Pseudomonas putida KT2440 1044648 NP_746427.1 CDS PP_4311 NC_002947.3 4902932 4904125 R similar to GB:X12534, SP:P10114, PID:35861, and PID:412184; identified by sequence similarity; D-amino-acid dehydrogenase complement(4902932..4904125) Pseudomonas putida KT2440 1041640 NP_746428.1 CDS PP_4312 NC_002947.3 4904170 4904832 R similar to GP:624074, and GP:624074; identified by sequence similarity; hypothetical protein complement(4904170..4904832) Pseudomonas putida KT2440 1041660 NP_746429.1 CDS PP_4313 NC_002947.3 4905067 4905405 R identified by match to PFAM protein family HMM PF00254; FKBP-type peptidylprolyl isomerase complement(4905067..4905405) Pseudomonas putida KT2440 1044631 NP_746430.1 CDS PP_4314 NC_002947.3 4905533 4906021 R similar to GP:15156320, GB:M28819, SP:P18784, PID:145869, PID:882534, GB:U00096, and PID:1789380; identified by sequence similarity; hypothetical protein complement(4905533..4906021) Pseudomonas putida KT2440 1041791 NP_746431.1 CDS PP_4315 NC_002947.3 4906008 4906796 R identified by match to PFAM protein family HMM PF02567; PhzF family phenazine biosynthesis protein complement(4906008..4906796) Pseudomonas putida KT2440 1046525 NP_746432.1 CDS PP_4316 NC_002947.3 4906849 4907787 R Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase complement(4906849..4907787) Pseudomonas putida KT2440 1043861 NP_746433.1 CDS PP_4317 NC_002947.3 4907826 4908023 R hypothetical protein complement(4907826..4908023) Pseudomonas putida KT2440 1041633 NP_746434.1 CDS PP_4318 NC_002947.3 4908305 4909606 D identified by match to PFAM protein family HMM PF01609; ISPpu8, transposase 4908305..4909606 Pseudomonas putida KT2440 1041635 NP_746435.1 CDS PP_4319 NC_002947.3 4910085 4910501 R hypothetical protein complement(4910085..4910501) Pseudomonas putida KT2440 1041798 NP_746436.1 CDS dsbE NC_002947.3 4912176 4912712 R similar to GB:U09073, GB:U09074, PID:483888, PID:483890, PID:483904, GB:J03810, SP:P11168, and PID:307125; identified by sequence similarity; thiol--disulfide oxidoreductase complement(4912176..4912712) Pseudomonas putida KT2440 1043462 NP_746437.1 CDS ccmF NC_002947.3 4912709 4914697 R identified by match to TIGR protein family HMM TIGR00353; cytochrome C biogenesis protein CcmF complement(4912709..4914697) Pseudomonas putida KT2440 1041632 NP_746438.1 CDS ccmE NC_002947.3 4914694 4915149 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome C biogenesis protein CcmE complement(4914694..4915149) Pseudomonas putida KT2440 1044576 NP_746439.1 CDS ccmD NC_002947.3 4915146 4915322 R similar to GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, PID:747710, GB:U07992, SP:P01842, PID:1335156, PID:1335158, PID:1335174, PID:186127, PID:2114277, PID:2114297, PID:2114299, PID:33700, PID:386814, PID:468249, PID:553491, and PID:871288; identified by sequence similarity; cytochrome C biogenesis protein CcmD complement(4915146..4915322) Pseudomonas putida KT2440 1041809 NP_746440.1 CDS ccmC NC_002947.3 4915319 4916086 R similar to GP:4107341; identified by sequence similarity; heme exporter protein CcmC complement(4915319..4916086) Pseudomonas putida KT2440 1044099 NP_746441.1 CDS ccmB NC_002947.3 4916133 4916801 R identified by match to TIGR protein family HMM TIGR01190; heme exporter protein CcmB complement(4916133..4916801) Pseudomonas putida KT2440 1041668 NP_746442.1 CDS ccmA NC_002947.3 4916798 4917430 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(4916798..4917430) Pseudomonas putida KT2440 1046142 NP_746443.1 CDS PP_4328 NC_002947.3 4917601 4919157 D identified by match to PFAM protein family HMM PF02120; hypothetical protein 4917601..4919157 Pseudomonas putida KT2440 1046124 NP_746444.1 CDS PP_4329 NC_002947.3 4919154 4919492 D identified by match to TIGR protein family HMM TIGR00789; FlhB domain-containing protein 4919154..4919492 Pseudomonas putida KT2440 1046151 NP_746445.1 CDS PP_4330 NC_002947.3 4919591 4922272 D similar to GP:433689; identified by sequence similarity; hypothetical protein 4919591..4922272 Pseudomonas putida KT2440 1042923 NP_746446.1 CDS PP_4331 NC_002947.3 4922380 4922775 R hypothetical protein complement(4922380..4922775) Pseudomonas putida KT2440 1044707 NP_746447.1 CDS cheW NC_002947.3 4922777 4923256 R similar to GP:2853606, and GP:2853606; identified by sequence similarity; purine-binding chemotaxis protein CheW complement(4922777..4923256) Pseudomonas putida KT2440 1045448 NP_746448.1 CDS PP_4333 NC_002947.3 4923298 4924194 R similar to GP:2853605; identified by sequence similarity; chemotaxis protein CheW complement(4923298..4924194) Pseudomonas putida KT2440 1043822 NP_746449.2 CDS PP_4334 NC_002947.3 4924194 4924982 R similar to GP:2853604, GB:M25108, SP:P05106, and PID:386833; identified by sequence similarity; ParA family protein complement(4924194..4924982) Pseudomonas putida KT2440 1044245 NP_746450.1 CDS motB NC_002947.3 4925167 4926024 R Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD complement(4925167..4926024) Pseudomonas putida KT2440 1043042 NP_746451.1 CDS motC NC_002947.3 4926028 4926768 R homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein complement(4926028..4926768) Pseudomonas putida KT2440 1045521 NP_746452.1 CDS cheB NC_002947.3 4926768 4927880 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(4926768..4927880) Pseudomonas putida KT2440 1046087 NP_746453.1 CDS cheA NC_002947.3 4927927 4930170 R similar to GP:2853600, and GP:2853600; identified by sequence similarity; chemotaxis protein CheA complement(4927927..4930170) Pseudomonas putida KT2440 1041662 NP_746454.1 CDS cheZ NC_002947.3 4930183 4930971 R similar to GP:2853599, and GP:2853599; identified by sequence similarity; chemotaxis protein CheZ complement(4930183..4930971) Pseudomonas putida KT2440 1043780 NP_746455.1 CDS cheY NC_002947.3 4930994 4931368 R similar to GP:2853598, and GP:2853598; identified by sequence similarity; response regulator receiver protein complement(4930994..4931368) Pseudomonas putida KT2440 1043398 NP_746456.1 CDS fliA NC_002947.3 4931476 4932216 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(4931476..4932216) Pseudomonas putida KT2440 1044726 NP_746457.1 CDS fleN NC_002947.3 4932213 4933046 R similar to GP:6692581; identified by sequence similarity; flagellar number regulator FleN complement(4932213..4933046) Pseudomonas putida KT2440 1045202 NP_746458.1 CDS flhF NC_002947.3 4933140 4934447 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(4933140..4934447) Pseudomonas putida KT2440 1045204 NP_746459.1 CDS flhA NC_002947.3 4934459 4936588 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(4934459..4936588) Pseudomonas putida KT2440 1045242 NP_746460.1 CDS PP_4345 NC_002947.3 4937006 4937698 D identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator 4937006..4937698 Pseudomonas putida KT2440 1042667 NP_746461.1 CDS ddlA NC_002947.3 4937693 4938751 R identified by match to PFAM protein family HMM PF01820; D-alanine--D-alanine ligase complement(4937693..4938751) Pseudomonas putida KT2440 1042642 NP_746462.1 CDS PP_4347 NC_002947.3 4939227 4940474 D identified by match to PFAM protein family HMM PF04055; hypothetical protein 4939227..4940474 Pseudomonas putida KT2440 1045005 NP_746463.1 CDS PP_4348 NC_002947.3 4940548 4941642 D similar to SP:Q07703; identified by sequence similarity; cystathionine beta-lyase 4940548..4941642 Pseudomonas putida KT2440 1044755 NP_746464.1 CDS PP_4349 NC_002947.3 4941676 4942554 D hypothetical protein 4941676..4942554 Pseudomonas putida KT2440 1041893 NP_746465.1 CDS PP_4350 NC_002947.3 4942565 4943728 D similar to GP:7297897; identified by sequence similarity; aminotransferase 4942565..4943728 Pseudomonas putida KT2440 1046086 NP_746466.1 CDS flhB NC_002947.3 4945437 4946579 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(4945437..4946579) Pseudomonas putida KT2440 1042653 NP_746467.1 CDS fliR NC_002947.3 4946582 4947358 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(4946582..4947358) Pseudomonas putida KT2440 1043790 NP_746468.1 CDS fliQ NC_002947.3 4947366 4947635 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(4947366..4947635) Pseudomonas putida KT2440 1041891 NP_746469.1 CDS fliP NC_002947.3 4947657 4948412 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(4947657..4948412) Pseudomonas putida KT2440 1041682 NP_746470.1 CDS fliO NC_002947.3 4948412 4948846 R similar to GP:5921672, and GP:5921672; identified by sequence similarity; flagellar assembly protein FliO complement(4948412..4948846) Pseudomonas putida KT2440 1043101 NP_746471.1 CDS fliN NC_002947.3 4948859 4949344 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(4948859..4949344) Pseudomonas putida KT2440 1045714 NP_746472.1 CDS fliM NC_002947.3 4949374 4950342 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(4949374..4950342) Pseudomonas putida KT2440 1042947 NP_746473.1 CDS fliL NC_002947.3 4950352 4950849 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL complement(4950352..4950849) Pseudomonas putida KT2440 1045666 NP_746474.1 CDS PP_4360 NC_002947.3 4950877 4950999 R hypothetical protein complement(4950877..4950999) Pseudomonas putida KT2440 1045502 NP_746475.1 CDS fliK NC_002947.3 4951006 4952271 R similar to GP:5921668, and GP:5921668; identified by sequence similarity; flagellar hook-length control protein complement(4951006..4952271) Pseudomonas putida KT2440 1045701 NP_746476.1 CDS PP_4362 NC_002947.3 4952343 4952681 R identified by match to PFAM protein family HMM PF01627; Hpt protein complement(4952343..4952681) Pseudomonas putida KT2440 1043087 NP_746477.1 CDS PP_4363 NC_002947.3 4952739 4954430 R similar to GP:5921667; identified by sequence similarity; response regulator receiver protein complement(4952739..4954430) Pseudomonas putida KT2440 1041733 NP_746478.1 CDS PP_4364 NC_002947.3 4954439 4954744 R identified by match to TIGR protein family HMM TIGR00377; anti-sigma-factor antagonist complement(4954439..4954744) Pseudomonas putida KT2440 1042527 NP_746479.1 CDS fliJ NC_002947.3 4954921 4955373 R rod/hook and filament chaperone; flagellar biosynthesis chaperone complement(4954921..4955373) Pseudomonas putida KT2440 1046205 NP_746480.2 CDS fliI NC_002947.3 4955380 4956735 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(4955380..4956735) Pseudomonas putida KT2440 1043501 NP_746481.1 CDS fliH NC_002947.3 4956725 4957516 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(4956725..4957516) Pseudomonas putida KT2440 1046146 NP_746482.2 CDS fliG NC_002947.3 4957679 4958698 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(4957679..4958698) Pseudomonas putida KT2440 1041836 NP_746483.1 CDS fliF NC_002947.3 4958691 4960469 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(4958691..4960469) Pseudomonas putida KT2440 1042454 NP_746484.1 CDS fliE NC_002947.3 4960485 4960817 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(4960485..4960817) Pseudomonas putida KT2440 1041797 NP_746485.1 CDS fleR NC_002947.3 4961081 4962436 R identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator complement(4961081..4962436) Pseudomonas putida KT2440 1041972 NP_746486.1 CDS fleS NC_002947.3 4962436 4963653 R similar to GP:12056607, GB:U09065, PID:483872, PID:553456, PID:553461, PID:553463, PID:553468, PID:619426, and PID:976315; identified by sequence similarity; PAS/PAC sensor signal transduction histidine kinase complement(4962436..4963653) Pseudomonas putida KT2440 1041790 NP_746487.1 CDS fleQ NC_002947.3 4963881 4965356 R identified by match to PFAM protein family HMM PF02954; Fis family transcriptional regulator complement(4963881..4965356) Pseudomonas putida KT2440 1042576 NP_746488.1 CDS PP_4374 NC_002947.3 4965527 4965820 R similar to GP:12056605, GB:X63561, PID:1220484, PID:56080, and PID:56093; identified by sequence similarity; hypothetical protein complement(4965527..4965820) Pseudomonas putida KT2440 1042267 NP_746489.1 CDS fliS NC_002947.3 4965839 4966234 R flagellin specific chaperone; flagellar protein FliS complement(4965839..4966234) Pseudomonas putida KT2440 1042597 NP_746490.1 CDS fliD NC_002947.3 4966317 4967675 R similar to GP:7081488, GB:U14003, SP:P39280, PID:536990, GB:U00096, and PID:1790589; identified by sequence similarity; flagellar cap protein FliD complement(4966317..4967675) Pseudomonas putida KT2440 1042463 NP_746491.1 CDS PP_4377 NC_002947.3 4967759 4968103 R similar to GB:M32101, SP:P16701, PID:145659, GB:U00096, PID:1788764, PID:1799843, PID:1799853, GB:M32101, SP:P16701, PID:145659, GB:U00096, PID:1788764, PID:1799843, and PID:1799853; identified by sequence similarity; flagellin FlaG complement(4967759..4968103) Pseudomonas putida KT2440 1042498 NP_746492.1 CDS fliC NC_002947.3 4968178 4970241 R similar to GB:M19888, GB:M21300, GB:M21301, SP:P22528, SP:P35321, PID:338417, PID:338421, PID:338434, GB:M19888, GB:M21300, GB:M21301, SP:P22528, SP:P35321, PID:338417, PID:338421, and PID:338434; identified by sequence similarity; flagellin FliC complement(4968178..4970241) Pseudomonas putida KT2440 1041796 NP_746493.1 CDS PP_4379 NC_002947.3 4970635 4971564 R similar to GP:10175505, SP:P28155, PID:48733, and PID:536810; identified by sequence similarity; beta-ketoacyl-ACP synthase complement(4970635..4971564) Pseudomonas putida KT2440 1046532 NP_746494.1 CDS flgL NC_002947.3 4971981 4973546 R With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(4971981..4973546) Pseudomonas putida KT2440 1042471 NP_746495.1 CDS flgK NC_002947.3 4973560 4975602 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(4973560..4975602) Pseudomonas putida KT2440 1042481 NP_746496.1 CDS flgJ NC_002947.3 4975615 4976769 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein FlgJ complement(4975615..4976769) Pseudomonas putida KT2440 1042627 NP_746497.1 CDS flgI NC_002947.3 4976781 4977890 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA complement(4976781..4977890) Pseudomonas putida KT2440 1042309 NP_746498.1 CDS flgH NC_002947.3 4977903 4978598 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(4977903..4978598) Pseudomonas putida KT2440 1044376 NP_746499.1 CDS flgG NC_002947.3 4978635 4979420 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(4978635..4979420) Pseudomonas putida KT2440 1043820 NP_746500.1 CDS flgF NC_002947.3 4979468 4980208 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(4979468..4980208) Pseudomonas putida KT2440 1041829 NP_746501.1 CDS PP_4387 NC_002947.3 4980369 4980560 R hypothetical protein complement(4980369..4980560) Pseudomonas putida KT2440 1043250 NP_746502.1 CDS flgE NC_002947.3 4980627 4981949 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(4980627..4981949) Pseudomonas putida KT2440 1044605 NP_746503.1 CDS flgD NC_002947.3 4981978 4982679 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(4981978..4982679) Pseudomonas putida KT2440 1041827 NP_746504.1 CDS flgC NC_002947.3 4982692 4983135 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(4982692..4983135) Pseudomonas putida KT2440 1041825 NP_746505.1 CDS flgB NC_002947.3 4983138 4983548 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB complement(4983138..4983548) Pseudomonas putida KT2440 1041605 NP_746506.1 CDS cheR NC_002947.3 4983870 4984697 R similar to GB:X68505, GB:X68505, GB:X63381, GB:X63381, SP:Q02078, SP:Q02080, PID:1197538, PID:34536, and PID:432656; identified by sequence similarity; chemotaxis protein CheR complement(4983870..4984697) Pseudomonas putida KT2440 1043793 NP_746507.1 CDS cheV-3 NC_002947.3 4984750 4985679 R identified by match to PFAM protein family HMM PF01584; chemotaxis protein CheV complement(4984750..4985679) Pseudomonas putida KT2440 1041669 NP_746508.1 CDS flgA NC_002947.3 4985832 4986509 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 4985832..4986509 Pseudomonas putida KT2440 1042637 NP_746509.1 CDS flgM NC_002947.3 4986674 4986988 D similar to GB:X72755, SP:Q07325, and PID:311376; identified by sequence similarity; anti-sigma-28 factor FlgM 4986674..4986988 Pseudomonas putida KT2440 1044243 NP_746510.1 CDS PP_4396 NC_002947.3 4987038 4987505 D FlgN family protein 4987038..4987505 Pseudomonas putida KT2440 1041708 NP_746511.1 CDS PP_4397 NC_002947.3 4987585 4988328 D similar to GP:9949486; identified by sequence similarity; type IV pilus assembly PilZ 4987585..4988328 Pseudomonas putida KT2440 1043210 NP_746512.1 CDS PP_4398 NC_002947.3 4988422 4989756 R identified by match to PFAM protein family HMM PF00083; major facilitator family transporter complement(4988422..4989756) Pseudomonas putida KT2440 1042970 NP_746513.1 CDS PP_4399 NC_002947.3 4989888 4991129 R similar to GB:L04656, SP:P35219, and PID:179938; identified by sequence similarity; glutamine synthetase complement(4989888..4991129) Pseudomonas putida KT2440 1041876 NP_746514.1 CDS bkdR NC_002947.3 4991358 4991843 R similar to GB:J04173, SP:P18669, PID:551174, GB:J04173, SP:P18669, and PID:551174; identified by sequence similarity; transcriptional regulator BkdR complement(4991358..4991843) Pseudomonas putida KT2440 1043794 NP_746515.1 CDS bkdA1 NC_002947.3 4992042 4993274 D similar to SP:P09060, and SP:P09060; identified by sequence similarity; 3-methyl-2-oxobutanoate dehydrogenase 4992042..4993274 Pseudomonas putida KT2440 1041720 NP_746516.1 CDS bkdA2 NC_002947.3 4993315 4994334 D similar to GP:790515; identified by sequence similarity; 2-oxoisovalerate dehydrogenase subunit beta 4993315..4994334 Pseudomonas putida KT2440 1043968 NP_746517.1 CDS bkdB NC_002947.3 4994335 4995606 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 4994335..4995606 Pseudomonas putida KT2440 1043796 NP_746518.1 CDS lpdV NC_002947.3 4995609 4996988 D E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4995609..4996988 Pseudomonas putida KT2440 1041933 NP_746519.1 CDS PP_4405 NC_002947.3 4997100 4998098 R identified by match to PFAM protein family HMM PF00990; PAS/PAC sensor-containing diguanylate cyclase complement(4997100..4998098) Pseudomonas putida KT2440 1041913 NP_746520.1 CDS PP_4406 NC_002947.3 4998314 4998841 D hypothetical protein 4998314..4998841 Pseudomonas putida KT2440 1044033 NP_746521.1 CDS PP_4407 NC_002947.3 4999146 5000528 D similar to GP:969027; identified by sequence similarity; amino acid ABC transporter permease 4999146..5000528 Pseudomonas putida KT2440 1041721 NP_746522.1 CDS PP_4409 NC_002947.3 5002214 5003644 D identified by match to PFAM protein family HMM PF00589; phage integrase site specific recombinase 5002214..5003644 Pseudomonas putida KT2440 1046128 NP_746523.1 CDS PP_4410 NC_002947.3 5003647 5006946 D hypothetical protein 5003647..5006946 Pseudomonas putida KT2440 1043927 NP_746524.1 CDS PP_4411 NC_002947.3 5008515 5009063 D hypothetical protein 5008515..5009063 Pseudomonas putida KT2440 1043923 NP_746525.1 CDS PP_4412 NC_002947.3 5009060 5009638 D hypothetical protein 5009060..5009638 Pseudomonas putida KT2440 1041729 NP_746526.1 CDS PP_4413 NC_002947.3 5009810 5010130 D hypothetical protein 5009810..5010130 Pseudomonas putida KT2440 1041819 NP_746527.1 CDS PP_4415 NC_002947.3 5010489 5011589 D identified by match to PFAM protein family HMM PF00589; hypothetical protein 5010489..5011589 Pseudomonas putida KT2440 1043935 NP_746528.1 CDS PP_4414 NC_002947.3 5010498 5010590 R hypothetical protein complement(5010498..5010590) Pseudomonas putida KT2440 1043938 NP_746529.1 CDS PP_4416 NC_002947.3 5012932 5013078 D hypothetical protein 5012932..5013078 Pseudomonas putida KT2440 1041747 NP_746530.1 CDS PP_4417 NC_002947.3 5012949 5013089 R hypothetical protein complement(5012949..5013089) Pseudomonas putida KT2440 1043920 NP_746531.1 CDS PP_4418 NC_002947.3 5013563 5013886 D hypothetical protein 5013563..5013886 Pseudomonas putida KT2440 1043919 NP_746532.1 CDS PP_4419 NC_002947.3 5014188 5014496 D identified by match to PFAM protein family HMM PF04218; transposase, OrfA 5014188..5014496 Pseudomonas putida KT2440 1043907 NP_746533.1 CDS PP_4420 NC_002947.3 5014541 5015350 D identified by match to PFAM protein family HMM PF00665; transposase, OrfB 5014541..5015350 Pseudomonas putida KT2440 1042605 NP_746534.1 CDS PP_4421 NC_002947.3 5015969 5017360 R similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; hypothetical protein complement(5015969..5017360) Pseudomonas putida KT2440 1044262 NP_746535.1 CDS PP_4422 NC_002947.3 5017382 5018854 R similar to GB:D11466, GB:D28788, GB:X77725, GB:D28787, GB:D28789, GB:D28790, GB:D28791, SP:P37287, PID:1132481, and PID:219994; identified by sequence similarity; succinate-semialdehyde dehydrogenase complement(5017382..5018854) Pseudomonas putida KT2440 1042053 NP_746536.1 CDS PP_4423 NC_002947.3 5019114 5020109 R similar to GP:15140294; identified by sequence similarity; hypothetical protein complement(5019114..5020109) Pseudomonas putida KT2440 1042420 NP_746537.1 CDS PP_4424 NC_002947.3 5020312 5020779 D similar to SP:P03062, and GB:X52093; identified by sequence similarity; AsnC family transcriptional regulator 5020312..5020779 Pseudomonas putida KT2440 1041968 NP_746538.1 CDS PP_4425 NC_002947.3 5020830 5021597 R similar to SP:P03062, GB:X52093, SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter ATP-binding protein complement(5020830..5021597) Pseudomonas putida KT2440 1043791 NP_746539.1 CDS PP_4426 NC_002947.3 5021696 5022352 R similar to SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter permease complement(5021696..5022352) Pseudomonas putida KT2440 1043905 NP_746540.1 CDS PP_4427 NC_002947.3 5022352 5023008 R similar to SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter permease complement(5022352..5023008) Pseudomonas putida KT2440 1046121 NP_746541.1 CDS PP_4428 NC_002947.3 5023079 5023933 R similar to GP:6689161, SP:P03062, and GB:X52093; identified by sequence similarity; amino acid ABC transporter substrate-binding protein complement(5023079..5023933) Pseudomonas putida KT2440 1043895 NP_746542.1 CDS PP_4429 NC_002947.3 5024177 5025577 D similar to GP:9948113; identified by sequence similarity; GntR family transcriptional regulator 5024177..5025577 Pseudomonas putida KT2440 1043855 NP_746543.1 CDS eutB NC_002947.3 5025685 5026677 D catalyzes the formation of 2-oxobutanoate from L-threonine; involved in ectoine utilization; threonine dehydratase 5025685..5026677 Pseudomonas putida KT2440 1041638 NP_746544.1 CDS PP_4431 NC_002947.3 5026689 5027681 D cyclodeaminase; ectoine utilization protein EutC 5026689..5027681 Pseudomonas putida KT2440 1042345 NP_746545.1 CDS PP_4432 NC_002947.3 5027806 5028921 D similar to GP:10174357; identified by sequence similarity; peptidase, M24 family protein 5027806..5028921 Pseudomonas putida KT2440 1044367 NP_746546.1 CDS PP_4433 NC_002947.3 5029360 5030712 D similar to GP:9716209; identified by sequence similarity; amino acid MFS transporter 5029360..5030712 Pseudomonas putida KT2440 1042557 NP_746547.1 CDS dadA-1 NC_002947.3 5031207 5032505 D catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 5031207..5032505 Pseudomonas putida KT2440 1041878 NP_746548.1 CDS PP_4435 NC_002947.3 5032480 5032833 D identified by match to PFAM protein family HMM PF01042; hypothetical protein 5032480..5032833 Pseudomonas putida KT2440 1041642 NP_746549.1 CDS PP_4437 NC_002947.3 5033243 5033563 D similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 5033243..5033563 Pseudomonas putida KT2440 1046112 NP_746550.1 CDS PP_4438 NC_002947.3 5033560 5033895 D similar to GP:4928612; identified by sequence similarity; ISPpu14, transposase Orf2 5033560..5033895 Pseudomonas putida KT2440 1043872 NP_746551.1 CDS PP_4439 NC_002947.3 5033959 5035494 D similar to GP:3414883, and GP:6009427; identified by sequence similarity; ISPpu14, transposase Orf3 5033959..5035494 Pseudomonas putida KT2440 1041653 NP_746552.1 CDS PP_4441 NC_002947.3 5036191 5036511 D identified by match to PFAM protein family HMM PF01527; ISPpu14, transposase Orf1 5036191..5036511 Pseudomonas putida KT2440 1043856 NP_746553.1 CDS PP_4442 NC_002947.3 5036508 5036843 D similar to GP:4928612, and GP:13926136; identified by sequence similarity; ISPpu14, transposase Orf2 5036508..5036843 Pseudomonas putida KT2440 1041815 NP_746554.1 CDS PP_4443 NC_002947.3 5036907 5038442 D similar to GP:3414883, and GP:3414883; identified by sequence similarity; ISPpu14, transposase Orf3 5036907..5038442 Pseudomonas putida KT2440 1046098 NP_746555.1 CDS PP_4444 NC_002947.3 5038453 5038707 D similar to GP:11139520; identified by sequence similarity; transposase 5038453..5038707 Pseudomonas putida KT2440 1041711 NP_746556.1 CDS PP_4445 NC_002947.3 5038698 5039456 D similar to GP:11139521, and SP:P05822; identified by sequence similarity; IS3 family transposase 5038698..5039456 Pseudomonas putida KT2440 1041675 NP_746557.1 CDS PP_4446 NC_002947.3 5039380 5040501 R similar to GP:2688957; identified by sequence similarity; group II intron-encoding maturase complement(5039380..5040501) Pseudomonas putida KT2440 1041813 NP_746558.1 CDS PP_4447 NC_002947.3 5041682 5042932 D hypothetical protein 5041682..5042932 Pseudomonas putida KT2440 1041589 NP_746559.1 CDS PP_4448 NC_002947.3 5042929 5044692 D similar to GB:Z27502, GB:Z29983, SP:P04438, PID:1335182, PID:32878, PID:474960, PID:505435, PID:563647, GB:Z27502, GB:Z29983, SP:P04438, PID:1335182, PID:32878, PID:474960, PID:505435, and PID:563647; identified by sequence similarity; hypothetical protein 5042929..5044692 Pseudomonas putida KT2440 1044318 NP_746560.1 CDS PP_4449 NC_002947.3 5045377 5045631 R similar to GP:4928013; identified by sequence similarity; hypothetical protein complement(5045377..5045631) Pseudomonas putida KT2440 1041599 NP_746561.1 CDS PP_4450 NC_002947.3 5046041 5046667 D similar to GB:L20469, GB:L35902, GB:L35903, GB:U25441, GB:U32499, SP:P35462, PID:579579, PID:806903, and PID:927342; identified by sequence similarity; phosphoglycerate mutase 5046041..5046667 Pseudomonas putida KT2440 1043467 NP_746562.1 CDS PP_4451 NC_002947.3 5048271 5049356 R hypothetical protein complement(5048271..5049356) Pseudomonas putida KT2440 1041903 NP_746563.1 CDS PP_4452 NC_002947.3 5051432 5052511 R similar to GP:6498362, GB:L31573, SP:P51687, and PID:508502; identified by sequence similarity; NAD/NADP octopine/nopaline dehydrogenase complement(5051432..5052511) Pseudomonas putida KT2440 1041627 NP_746564.1 CDS PP_4453 NC_002947.3 5052616 5054448 R similar to GP:2665715; identified by sequence similarity; opine ABC transporter ATP-binding protein complement(5052616..5054448) Pseudomonas putida KT2440 1046189 NP_746565.1 CDS PP_4454 NC_002947.3 5054514 5055386 R similar to GP:2665714, and GP:2665714; identified by sequence similarity; opine ABC transporter permease complement(5054514..5055386) Pseudomonas putida KT2440 1045213 NP_746566.1 CDS PP_4455 NC_002947.3 5055383 5056324 R similar to GP:2665713; identified by sequence similarity; opine ABC transporter substrate-binding protein complement(5055383..5056324) Pseudomonas putida KT2440 1041835 NP_746567.1 CDS PP_4456 NC_002947.3 5056455 5057849 R similar to GP:6498364; identified by sequence similarity; nopaline dehydrogenase complement(5056455..5057849) Pseudomonas putida KT2440 1045217 NP_746568.1 CDS PP_4457 NC_002947.3 5058123 5059250 R similar to GP:6498366; identified by sequence similarity; nopaline dehydrogenase complement(5058123..5059250) Pseudomonas putida KT2440 1041902 NP_746569.1 CDS PP_4458 NC_002947.3 5059251 5060831 R similar to GP:2665716, and GP:2665716; identified by sequence similarity; opine ABC transporter substrate-binding protein complement(5059251..5060831) Pseudomonas putida KT2440 1041954 NP_746570.1 CDS PP_4459 NC_002947.3 5061322 5062419 D similar to GP:5824150, and GP:5824150; identified by sequence similarity; transposase 5061322..5062419 Pseudomonas putida KT2440 1042042 NP_746571.1 CDS PP_4460 NC_002947.3 5062617 5063543 D similar to GB:J02984, GB:M32405, SP:P11174, PID:306898, and PID:337416; identified by sequence similarity; LysR family transcriptional regulator 5062617..5063543 Pseudomonas putida KT2440 1041839 NP_746572.1 CDS PP_4461 NC_002947.3 5063702 5064994 R identified by match to TIGR protein family HMM TIGR00883; major facilitator family transporter complement(5063702..5064994) Pseudomonas putida KT2440 1045144 NP_746573.1 CDS PP_4462 NC_002947.3 5065105 5065770 R similar to GP:13094205; identified by sequence similarity; 4-hydroxy-4-methyl-2-oxoglutarate aldolase complement(5065105..5065770) Pseudomonas putida KT2440 1041984 NP_746574.1 CDS PP_4463 NC_002947.3 5065767 5066588 R similar to GP:3513356; identified by sequence similarity; carbon-nitrogen hydrolase complement(5065767..5066588) Pseudomonas putida KT2440 1041877 NP_746575.1 CDS PP_4464 NC_002947.3 5066629 5067534 R similar to GB:J02984, GB:M32405, SP:P11174, PID:306898, and PID:337416; identified by sequence similarity; LysR family transcriptional regulator complement(5066629..5067534) Pseudomonas putida KT2440 1044462 NP_746576.1 CDS PP_4465 NC_002947.3 5067950 5069302 R similar to GP:3253207; identified by sequence similarity; porin complement(5067950..5069302) Pseudomonas putida KT2440 1044687 NP_746577.1 CDS PP_4466 NC_002947.3 5070012 5070884 R similar to SP:P10088; identified by sequence similarity; TauD/TfdA family dioxygenase complement(5070012..5070884) Pseudomonas putida KT2440 1041927 NP_746578.1 CDS PP_4467 NC_002947.3 5071130 5072032 D similar to GP:6498174; identified by sequence similarity; LysR family transcriptional regulator 5071130..5072032 Pseudomonas putida KT2440 1043834 NP_746579.1 CDS PP_4468 NC_002947.3 5074743 5075234 D identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator 5074743..5075234 Pseudomonas putida KT2440 1044276 NP_746580.1 CDS gmk-1 NC_002947.3 5075939 5076538 R similar to GB:M22538, SP:P19404, PID:1311466, and PID:188852; identified by sequence similarity; phosphonate metabolism protein/1,5-bisphosphokinase PhnN complement(5075939..5076538) Pseudomonas putida KT2440 1045683 NP_746581.1 CDS algZ NC_002947.3 5076877 5077203 D identified by match to PFAM protein family HMM PF03869; Arc domain-containing protein DNA binding domain-containing protein 5076877..5077203 Pseudomonas putida KT2440 1042008 NP_746582.1 CDS mgtE NC_002947.3 5077311 5078753 R identified by match to TIGR protein family HMM TIGR00400; magnesium transporter complement(5077311..5078753) Pseudomonas putida KT2440 1042002 NP_746583.1 CDS csrA NC_002947.3 5079945 5080133 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(5079945..5080133) Pseudomonas putida KT2440 1042051 NP_746584.1 CDS PP_4473 NC_002947.3 5080301 5081536 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(5080301..5081536) Pseudomonas putida KT2440 1041833 NP_746585.1 CDS alaS NC_002947.3 5081639 5084263 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(5081639..5084263) Pseudomonas putida KT2440 1045889 NP_746586.1 CDS astE NC_002947.3 5084648 5085655 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(5084648..5085655) Pseudomonas putida KT2440 1044338 NP_746587.1 CDS PP_4476 NC_002947.3 5085666 5085956 R similar to GP:2656128; identified by sequence similarity; hypothetical protein complement(5085666..5085956) Pseudomonas putida KT2440 1041935 NP_746588.1 CDS astB NC_002947.3 5085971 5087320 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(5085971..5087320) Pseudomonas putida KT2440 1041931 NP_746589.1 CDS astD NC_002947.3 5087344 5088807 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(5087344..5088807) Pseudomonas putida KT2440 1043982 NP_746590.1 CDS aruG NC_002947.3 5088808 5089836 R arginine N-succinyltransferase subunit beta complement(5088808..5089836) Pseudomonas putida KT2440 1041844 NP_746591.1 CDS aruF NC_002947.3 5089915 5090934 R arginine N-succinyltransferase subunit alpha complement(5089915..5090934) Pseudomonas putida KT2440 1043805 NP_746592.1 CDS argD NC_002947.3 5091082 5092302 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase complement(5091082..5092302) Pseudomonas putida KT2440 1041851 NP_746593.1 CDS PP_4482 NC_002947.3 5092639 5093619 R similar to GB:M28829, PID:551976, GB:M28829, and PID:551976; identified by sequence similarity; AraC family transcriptional regulator complement(5092639..5093619) Pseudomonas putida KT2440 1043797 NP_746594.1 CDS PP_4483 NC_002947.3 5093718 5094482 R similar to GB:L14430, SP:Q07131, PID:292874, and PID:881394; identified by sequence similarity; basic amino acid ABC transporter ATP-binding protein complement(5093718..5094482) Pseudomonas putida KT2440 1041857 NP_746595.1 CDS PP_4484 NC_002947.3 5094505 5095203 R similar to GP:2668597, GB:M59807, SP:P24001, and PID:189226; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit complement(5094505..5095203) Pseudomonas putida KT2440 1043572 NP_746596.1 CDS PP_4485 NC_002947.3 5095200 5095889 R similar to GB:M81188, SP:P00449, GB:M81914, PID:143203, PID:143552, and PID:143555; identified by sequence similarity; polar amino acid ABC transporter inner membrane subunit complement(5095200..5095889) Pseudomonas putida KT2440 1043373 NP_746597.1 CDS PP_4486 NC_002947.3 5095978 5096763 R similar to GB:M81188, SP:P00449, GB:M81914, PID:143203, PID:143552, and PID:143555; identified by sequence similarity; amino acid ABC transporter substrate-binding protein complement(5095978..5096763) Pseudomonas putida KT2440 1043399 NP_746598.1 CDS acsA NC_002947.3 5097299 5099260 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(5097299..5099260) Pseudomonas putida KT2440 1042436 NP_746599.1 CDS PP_4488 NC_002947.3 5099658 5099912 D hypothetical protein 5099658..5099912 Pseudomonas putida KT2440 1043185 NP_746600.1 CDS phhR NC_002947.3 5100065 5101624 R similar to GB:X79146, and PID:487694; identified by sequence similarity; transcriptional regulator TyrR complement(5100065..5101624) Pseudomonas putida KT2440 1042510 NP_746601.1 CDS phhA NC_002947.3 5101882 5102670 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 5101882..5102670 Pseudomonas putida KT2440 1043385 NP_746602.1 CDS phhB NC_002947.3 5102710 5103066 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 5102710..5103066 Pseudomonas putida KT2440 1043386 NP_746603.1 CDS PP_4492 NC_002947.3 5103773 5104975 D similar to GB:M23575, GB:L36606, GB:M28234, GB:M28235, GB:M34420, SP:P11462, SP:P11463, SP:P11464, PID:180235, PID:190649, PID:306801, PID:306802, PID:493743, PID:553625, PID:553627, PID:603453, PID:808015, and PID:904281; identified by sequence similarity; major facilitator superfamily transporter 5103773..5104975 Pseudomonas putida KT2440 1043408 NP_746604.1 CDS PP_4493 NC_002947.3 5105089 5108109 R similar to GP:9887339; identified by sequence similarity; FAD linked oxidase domain-containing protein complement(5105089..5108109) Pseudomonas putida KT2440 1041889 NP_746605.1 CDS PP_4494 NC_002947.3 5108262 5109146 D similar to GP:9887337; identified by sequence similarity; LysR family transcriptional regulator 5108262..5109146 Pseudomonas putida KT2440 1046259 NP_746606.1 CDS PP_4495 NC_002947.3 5109285 5110703 R similar to SP:P15993; identified by sequence similarity; amino acid ABC transporter permease complement(5109285..5110703) Pseudomonas putida KT2440 1041875 NP_746607.1 CDS PP_4497 NC_002947.3 5112675 5113508 R identified by match to PFAM protein family HMM PF04079; hypothetical protein complement(5112675..5113508) Pseudomonas putida KT2440 1043473 NP_746608.1 CDS PP_4498 NC_002947.3 5113429 5114316 R identified by match to PFAM protein family HMM PF02616; chromosome segregation and condensation protein ScpA complement(5113429..5114316) Pseudomonas putida KT2440 1043476 NP_746609.1 CDS PP_4499 NC_002947.3 5114280 5114945 R identified by match to TIGR protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(5114280..5114945) Pseudomonas putida KT2440 1041849 NP_746610.1 CDS PP_4500 NC_002947.3 5114923 5115783 R identified by match to PFAM protein family HMM PF02231; trpH family protein complement(5114923..5115783) Pseudomonas putida KT2440 1043801 NP_746611.1 CDS ispZ NC_002947.3 5115851 5116444 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 5115851..5116444 Pseudomonas putida KT2440 1043752 NP_746612.2 CDS PP_4502 NC_002947.3 5116446 5116745 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 5116446..5116745 Pseudomonas putida KT2440 1043678 NP_746613.1 CDS PP_4503 NC_002947.3 5116910 5117587 D identified by match to PFAM protein family HMM PF00072; winged helix family two component transcriptional regulator 5116910..5117587 Pseudomonas putida KT2440 1041930 NP_746614.1 CDS PP_4504 NC_002947.3 5117750 5118166 D hypothetical protein 5117750..5118166 Pseudomonas putida KT2440 1044142 NP_746615.1 CDS PP_4505 NC_002947.3 5118225 5119565 D similar to GP:9949326; identified by sequence similarity; integral membrane sensor signal transduction histidine kinase 5118225..5119565 Pseudomonas putida KT2440 1044016 NP_746616.1 CDS PP_4506 NC_002947.3 5119696 5120253 R identified by match to PFAM protein family HMM PF00881; nitroreductase complement(5119696..5120253) Pseudomonas putida KT2440 1041845 NP_746617.1 CDS PP_4507 NC_002947.3 5120356 5121810 D identified by match to PFAM protein family HMM PF04247; TrkH family potassium uptake protein 5120356..5121810 Pseudomonas putida KT2440 1046350 NP_746618.1 CDS PP_4508 NC_002947.3 5121767 5122828 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(5121767..5122828) Pseudomonas putida KT2440 1045806 NP_746619.1 CDS PP_4509 NC_002947.3 5122982 5123293 D hypothetical protein 5122982..5123293 Pseudomonas putida KT2440 1041598 NP_746620.1 CDS PP_4510 NC_002947.3 5123332 5124129 R identified by match to PFAM protein family HMM PF00149; metallophosphoesterase complement(5123332..5124129) Pseudomonas putida KT2440 1041606 NP_746621.1 CDS PP_4511 NC_002947.3 5124257 5125024 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5124257..5125024 Pseudomonas putida KT2440 1041792 NP_746622.1 CDS PP_4512 NC_002947.3 5125206 5126096 D identified by match to PFAM protein family HMM PF00892; hypothetical protein 5125206..5126096 Pseudomonas putida KT2440 1041618 NP_746623.1 CDS PP_4513 NC_002947.3 5126097 5126378 R hypothetical protein complement(5126097..5126378) Pseudomonas putida KT2440 1042706 NP_746624.1 CDS PP_4514 NC_002947.3 5126377 5128632 D identified by match to PFAM protein family HMM PF01734; patatin 5126377..5128632 Pseudomonas putida KT2440 1044827 NP_746625.1 CDS PP_4515 NC_002947.3 5128665 5129102 R identified by match to PFAM protein family HMM PF03551; MarR family transcriptional regulator complement(5128665..5129102) Pseudomonas putida KT2440 1041737 NP_746626.1 CDS recQ NC_002947.3 5129254 5131401 R similar to SP:P15043; identified by sequence similarity; ATP-dependent DNA helicase RecQ complement(5129254..5131401) Pseudomonas putida KT2440 1041657 NP_746627.1 CDS PP_4517 NC_002947.3 5131645 5132232 D identified by match to PFAM protein family HMM PF03695; hypothetical protein 5131645..5132232 Pseudomonas putida KT2440 1043337 NP_746628.1 CDS PP_4518 NC_002947.3 5132240 5132605 D identified by match to PFAM protein family HMM PF04304; hypothetical protein 5132240..5132605 Pseudomonas putida KT2440 1041612 NP_746629.1 CDS tolC NC_002947.3 5132917 5134275 D similar to GB:X12387, SP:P05184, SP:P08684, SP:P20815, PID:181354, PID:181372, PID:181374, PID:219963, PID:35911, and PID:510086; identified by sequence similarity; TolC family type I secretion outer membrane protein 5132917..5134275 Pseudomonas putida KT2440 1042710 NP_746630.1 CDS PP_4520 NC_002947.3 5134338 5134937 R identified by match to PFAM protein family HMM PF03942; DTW domain containing protein complement(5134338..5134937) Pseudomonas putida KT2440 1041655 NP_746631.1 CDS PP_4521 NC_002947.3 5135002 5136567 R similar to GP:9947522; identified by sequence similarity; aerotaxis receptor complement(5135002..5136567) Pseudomonas putida KT2440 1046348 NP_746632.1 CDS PP_4522 NC_002947.3 5136706 5137599 R similar to GP:9947370; identified by sequence similarity; LysR family transcriptional regulator complement(5136706..5137599) Pseudomonas putida KT2440 1046351 NP_746633.1 CDS PP_4523 NC_002947.3 5137812 5138774 D similar to SP:P37819; identified by sequence similarity; agmatinase 5137812..5138774 Pseudomonas putida KT2440 1046349 NP_746634.1 CDS PP_4524 NC_002947.3 5138907 5140286 D identified by match to PFAM protein family HMM PF04279; Na+/solute symporter 5138907..5140286 Pseudomonas putida KT2440 1046340 NP_746635.1 CDS PP_4525 NC_002947.3 5140666 5141559 R similar to GP:9947361; identified by sequence similarity; LysR family transcriptional regulator complement(5140666..5141559) Pseudomonas putida KT2440 1046344 NP_746636.1 CDS PP_4526 NC_002947.3 5141664 5142836 D identified by match to PFAM protein family HMM PF04306; hypothetical protein 5141664..5142836 Pseudomonas putida KT2440 1046341 NP_746637.1 CDS PP_4527 NC_002947.3 5142855 5143781 R identified by match to PFAM protein family HMM PF00892; hypothetical protein complement(5142855..5143781) Pseudomonas putida KT2440 1046339 NP_746638.1 CDS PP_4528 NC_002947.3 5143887 5144318 R similar to GP:9949398; identified by sequence similarity; hypothetical protein complement(5143887..5144318) Pseudomonas putida KT2440 1046270 NP_746639.1 CDS PP_4529 NC_002947.3 5144359 5144613 R hypothetical protein complement(5144359..5144613) Pseudomonas putida KT2440 1046338 NP_746640.1 CDS PP_4530 NC_002947.3 5144591 5144869 R similar to GP:15073547, GB:D28124, SP:P41271, and PID:641822; identified by sequence similarity; hypothetical protein complement(5144591..5144869) Pseudomonas putida KT2440 1046337 NP_746641.1 CDS PP_4531 NC_002947.3 5145085 5145357 D identified by match to PFAM protein family HMM PF03701; hypothetical protein 5145085..5145357 Pseudomonas putida KT2440 1046254 NP_746642.1 CDS PP_4532 NC_002947.3 5145429 5146751 R identified by match to PFAM protein family HMM PF00271; DEAD/DEAH box helicase complement(5145429..5146751) Pseudomonas putida KT2440 1046264 NP_746643.1 CDS PP_4533 NC_002947.3 5146894 5148195 D identified by match to PFAM protein family HMM PF00924; mechanosensitive ion channel protein MscS 5146894..5148195 Pseudomonas putida KT2440 1046261 NP_746644.1 CDS PP_4534 NC_002947.3 5148633 5148875 R hypothetical protein complement(5148633..5148875) Pseudomonas putida KT2440 1046220 NP_746645.1 CDS PP_4535 NC_002947.3 5149460 5151463 R similar to GP:5738271; identified by sequence similarity; hypothetical protein complement(5149460..5151463) Pseudomonas putida KT2440 1046244 NP_746646.1 CDS PP_4537 NC_002947.3 5153335 5154210 R identified by match to TIGR protein family HMM TIGR00950; carboxylate/amino acid/amine transporter complement(5153335..5154210) Pseudomonas putida KT2440 1042123 NP_746647.1 CDS PP_4538 NC_002947.3 5154466 5155065 R similar to SP:P41407; identified by sequence similarity; NAD(P)H dehydrogenase (quinone) complement(5154466..5155065) Pseudomonas putida KT2440 1046192 NP_746648.1 CDS PP_4539 NC_002947.3 5155540 5156463 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 5155540..5156463 Pseudomonas putida KT2440 1046184 NP_746649.1 CDS PP_4540 NC_002947.3 5156477 5157289 D identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 5156477..5157289 Pseudomonas putida KT2440 1043349 NP_746650.1 CDS ppiA NC_002947.3 5157283 5157840 D identified by match to PFAM protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A 5157283..5157840 Pseudomonas putida KT2440 1046170 NP_746651.1 CDS PP_4542 NC_002947.3 5157903 5159735 D identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein/permease 5157903..5159735 Pseudomonas putida KT2440 1046131 NP_746652.1 CDS PP_4543 NC_002947.3 5159841 5161052 R hypothetical protein complement(5159841..5161052) Pseudomonas putida KT2440 1046062 NP_746653.1 CDS PP_4544 NC_002947.3 5161231 5162475 D hypothetical protein 5161231..5162475 Pseudomonas putida KT2440 1046085 NP_746654.1 CDS PP_4545 NC_002947.3 5162676 5163848 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(5162676..5163848) Pseudomonas putida KT2440 1046063 NP_746655.1 CDS hrpA NC_002947.3 5163972 5167877 R similar to GP:9949425, and SP:P43329; identified by sequence similarity; ATP-dependent helicase HrpA complement(5163972..5167877) Pseudomonas putida KT2440 1041594 NP_746656.1 CDS PP_4547 NC_002947.3 5168381 5169745 D similar to SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 5168381..5169745 Pseudomonas putida KT2440 1046115 NP_746657.1 CDS PP_4548 NC_002947.3 5169770 5171077 D similar to GB:X65867, GB:S60710, SP:P30566, PID:28904, and PID:28905; identified by sequence similarity; FAD dependent oxidoreductase 5169770..5171077 Pseudomonas putida KT2440 1046080 NP_746658.1 CDS fadD NC_002947.3 5171260 5172957 R activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase complement(5171260..5172957) Pseudomonas putida KT2440 1046084 NP_746659.1 CDS fadD2 NC_002947.3 5173289 5174977 R Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase complement(5173289..5174977) Pseudomonas putida KT2440 1046183 NP_746660.1 CDS PP_4551 NC_002947.3 5175196 5176140 D identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase 5175196..5176140 Pseudomonas putida KT2440 1046175 NP_746661.1 CDS phaJ1 NC_002947.3 5176175 5176645 D identified by match to PFAM protein family HMM PF01575; acyl dehydratase MaoC 5176175..5176645 Pseudomonas putida KT2440 1046178 NP_746662.1 CDS PP_4553 NC_002947.3 5176762 5177982 R ECF subfamily RNA polymerase sigma factor complement(5176762..5177982) Pseudomonas putida KT2440 1046186 NP_746663.1 CDS PP_4554 NC_002947.3 5178000 5178485 R similar to GP:10173309, and GP:15141407; identified by sequence similarity; activator of Hsp90 ATPase 1 family protein complement(5178000..5178485) Pseudomonas putida KT2440 1046216 NP_746664.1 CDS PP_4555 NC_002947.3 5178507 5178851 R DGPFAETKE family protein complement(5178507..5178851) Pseudomonas putida KT2440 1046191 NP_746665.1 CDS PP_4556 NC_002947.3 5178896 5179321 R similar to GP:14523362; identified by sequence similarity; hypothetical protein complement(5178896..5179321) Pseudomonas putida KT2440 1046215 NP_746666.1 CDS PP_4557 NC_002947.3 5179513 5179770 R hypothetical protein complement(5179513..5179770) Pseudomonas putida KT2440 1046221 NP_746667.1 CDS PP_4558 NC_002947.3 5180053 5180493 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 5180053..5180493 Pseudomonas putida KT2440 1046342 NP_746668.1 CDS def NC_002947.3 5180448 5180984 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(5180448..5180984) Pseudomonas putida KT2440 1046247 NP_746669.1 CDS PP_4560 NC_002947.3 5180984 5181940 R identified by match to PFAM protein family HMM PF03631; ribonuclease BN complement(5180984..5181940) Pseudomonas putida KT2440 1046249 NP_746670.1 CDS PP_4561 NC_002947.3 5182094 5182273 R CsbD family protein complement(5182094..5182273) Pseudomonas putida KT2440 1046343 NP_746671.1 CDS PP_4562 NC_002947.3 5182509 5182889 D hypothetical protein 5182509..5182889 Pseudomonas putida KT2440 1046347 NP_746672.1 CDS PP_4563 NC_002947.3 5182895 5183731 R RNA binding S1 domain-containing protein complement(5182895..5183731) Pseudomonas putida KT2440 1046345 NP_746673.1 CDS PP_4564 NC_002947.3 5183862 5184722 D lipoprotein 5183862..5184722 Pseudomonas putida KT2440 1046346 NP_746674.1 CDS aceK NC_002947.3 5184742 5186457 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase complement(5184742..5186457) Pseudomonas putida KT2440 1042619 NP_746675.1 CDS PP_4566 NC_002947.3 5186662 5187537 D identified by match to PFAM protein family HMM PF04279; hypothetical protein 5186662..5187537 Pseudomonas putida KT2440 1041671 NP_746676.1 CDS PP_4567 NC_002947.3 5187494 5188009 D hypothetical protein 5187494..5188009 Pseudomonas putida KT2440 1041736 NP_746677.1 CDS PP_4568 NC_002947.3 5188013 5188894 R identified by match to PFAM protein family HMM PF04093; hypothetical protein complement(5188013..5188894) Pseudomonas putida KT2440 1041654 NP_746678.1 CDS PP_4569 NC_002947.3 5189010 5189303 R hypothetical protein complement(5189010..5189303) Pseudomonas putida KT2440 1041691 NP_746679.1 CDS PP_4570 NC_002947.3 5189328 5190263 R hypothetical protein complement(5189328..5190263) Pseudomonas putida KT2440 1041739 NP_746680.1 CDS cysK NC_002947.3 5190437 5191411 R similar to SP:P11096; identified by sequence similarity; cysteine synthase A complement(5190437..5191411) Pseudomonas putida KT2440 1041687 NP_746681.1 CDS PP_4572 NC_002947.3 5191544 5192617 D similar to GP:9948783; identified by sequence similarity; hypothetical protein 5191544..5192617 Pseudomonas putida KT2440 1041689 NP_746682.1 CDS PP_4573 NC_002947.3 5192819 5193664 D identified by match to PFAM protein family HMM PF00004; ATPase AAA 5192819..5193664 Pseudomonas putida KT2440 1042780 NP_746683.1 CDS PP_4574 NC_002947.3 5193678 5194856 D hypothetical protein 5193678..5194856 Pseudomonas putida KT2440 1041692 NP_746684.1 CDS PP_4575 NC_002947.3 5194909 5195826 R identified by match to PFAM protein family HMM PF02626; urea amidolyase complement(5194909..5195826) Pseudomonas putida KT2440 1041986 NP_746685.1 CDS PP_4576 NC_002947.3 5195823 5196512 R identified by match to TIGR protein family HMM TIGR00370; allophanate hydrolase subunit 1 complement(5195823..5196512) Pseudomonas putida KT2440 1046038 NP_746686.1 CDS PP_4577 NC_002947.3 5196509 5197285 R identified by match to PFAM protein family HMM PF03746; LamB/YcsF family protein complement(5196509..5197285) Pseudomonas putida KT2440 1046000 NP_746687.1 CDS PP_4578 NC_002947.3 5197295 5198581 R identified by match to TIGR protein family HMM TIGR00895; major facilitator family transporter complement(5197295..5198581) Pseudomonas putida KT2440 1046020 NP_746688.1 CDS PP_4579 NC_002947.3 5198712 5199623 D similar to GB:X02751, GB:L00043, GB:X53291, GB:X53292, GB:X05564, GB:X05565, GB:L00040, GB:L00041, GB:L00042, GB:M10055, GB:K03211, GB:M25898, GB:S68580, GB:X07440, GB:X61282, GB:X00645, SP:P01111, SP:P01112, PID:1335234, PID:1335235, PID:1335236, PID:1335287, PID:190927, PID:190938, PID:35092, PID:35103, PID:465130, PID:553520, PID:553633, PID:553635, PID:553638, PID:825697, and PID:929658; identified by sequence similarity; LysR family transcriptional regulator 5198712..5199623 Pseudomonas putida KT2440 1045079 NP_746689.1 CDS PP_4580 NC_002947.3 5199696 5200217 R hypothetical protein complement(5199696..5200217) Pseudomonas putida KT2440 1044127 NP_746690.1 CDS PP_4581 NC_002947.3 5200227 5201000 R hypothetical protein complement(5200227..5201000) Pseudomonas putida KT2440 1045019 NP_746691.1 CDS PP_4582 NC_002947.3 5201015 5201512 R hypothetical protein complement(5201015..5201512) Pseudomonas putida KT2440 1044133 NP_746692.1 CDS PP_4583 NC_002947.3 5201692 5203734 D similar to GP:9947241, GB:J03589, GB:M35604, SP:P11441, PID:1203975, PID:340070, GB:J03589, GB:M35604, SP:P11441, PID:1203975, and PID:340070; identified by sequence similarity; oligopeptidase B 5201692..5203734 Pseudomonas putida KT2440 1044043 NP_746693.1 CDS PP_4584 NC_002947.3 5204194 5204565 D similar to GB:M88282, SP:P40200, PID:338672, GB:M88282, SP:P40200, and PID:338672; identified by sequence similarity; hypothetical protein 5204194..5204565 Pseudomonas putida KT2440 1041758 NP_746694.1 CDS PP_4585 NC_002947.3 5204637 5205107 D identified by match to PFAM protein family HMM PF00588; RNA methyltransferase 5204637..5205107 Pseudomonas putida KT2440 1041763 NP_746695.1 CDS PP_4586 NC_002947.3 5205222 5206430 R hypothetical protein complement(5205222..5206430) Pseudomonas putida KT2440 1043857 NP_746696.1 CDS PP_4587 NC_002947.3 5206472 5206924 R hypothetical protein complement(5206472..5206924) Pseudomonas putida KT2440 1044420 NP_746697.1 CDS PP_4588 NC_002947.3 5207067 5207660 D similar to GP:10241924; identified by sequence similarity; nitroreductase 5207067..5207660 Pseudomonas putida KT2440 1043511 NP_746698.1 CDS PP_4589 NC_002947.3 5207774 5208706 R identified by match to PFAM protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase complement(5207774..5208706) Pseudomonas putida KT2440 1043482 NP_746699.1 CDS PP_4590 NC_002947.3 5208709 5209002 R hypothetical protein complement(5208709..5209002) Pseudomonas putida KT2440 1045436 NP_746700.1 CDS rnd NC_002947.3 5208999 5210132 R similar to GB:L07518, and PID:292046; identified by sequence similarity; ribonuclease D complement(5208999..5210132) Pseudomonas putida KT2440 1045092 NP_746701.1 CDS PP_4592 NC_002947.3 5210310 5211947 R identified by match to PFAM protein family HMM PF02418; hypothetical protein complement(5210310..5211947) Pseudomonas putida KT2440 1044554 NP_746702.1 CDS PP_4593 NC_002947.3 5212198 5212434 D similar to SP:P06695, GB:Z00027, PID:43722, PID:43725, SP:P06695, GB:Z00027, PID:43722, and PID:43725; identified by sequence similarity; hypothetical protein 5212198..5212434 Pseudomonas putida KT2440 1042721 NP_746703.1 CDS PP_4594 NC_002947.3 5212528 5213709 R similar to GP:2641242; identified by sequence similarity; cystathionine gamma-lyase complement(5212528..5213709) Pseudomonas putida KT2440 1041848 NP_746704.1 CDS PP_4595 NC_002947.3 5213769 5214263 D identified by match to PFAM protein family HMM PF01037; AsnC family transcriptional regulator 5213769..5214263 Pseudomonas putida KT2440 1042756 NP_746705.1 CDS PP_4596 NC_002947.3 5214373 5216703 R similar to SP:P07658; identified by sequence similarity; molybdopterin oxidoreductase subunit alpha complement(5214373..5216703) Pseudomonas putida KT2440 1041899 NP_746706.1 CDS moaA NC_002947.3 5216926 5217930 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 5216926..5217930 Pseudomonas putida KT2440 1042651 NP_746707.1 CDS PP_4598 NC_002947.3 5217951 5218850 D similar to SP:P32109, GB:U15124, PID:563996, SP:P32109, GB:U15124, and PID:563996; identified by sequence similarity; hypothetical protein 5217951..5218850 Pseudomonas putida KT2440 1041713 NP_746708.1 CDS PP_4599 NC_002947.3 5219099 5220064 D similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 5219099..5220064 Pseudomonas putida KT2440 1041932 NP_746709.1 CDS moaB-2 NC_002947.3 5220213 5220731 R similar to SP:P30746; identified by sequence similarity; molybdenum cofactor biosynthesis protein B complement(5220213..5220731) Pseudomonas putida KT2440 1042240 NP_746710.1 CDS PP_4601 NC_002947.3 5220873 5221760 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 5220873..5221760 Pseudomonas putida KT2440 1041690 NP_746711.1 CDS PP_4602 NC_002947.3 5221748 5222587 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(5221748..5222587) Pseudomonas putida KT2440 1041823 NP_746712.1 CDS PP_4603 NC_002947.3 5222966 5224294 R similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase complement(5222966..5224294) Pseudomonas putida KT2440 1042161 NP_746713.1 CDS PP_4604 NC_002947.3 5224673 5225575 R identified by match to PFAM protein family HMM PF04103; hypothetical protein complement(5224673..5225575) Pseudomonas putida KT2440 1046163 NP_746714.1 CDS PP_4605 NC_002947.3 5225761 5226636 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 5225761..5226636 Pseudomonas putida KT2440 1044608 NP_746715.1 CDS PP_4606 NC_002947.3 5226666 5229056 R identified by match to PFAM protein family HMM PF00593; TonB-dependent siderophore receptor complement(5226666..5229056) Pseudomonas putida KT2440 1045702 NP_746716.1 CDS PP_4607 NC_002947.3 5229232 5230212 R FecR anti-FecI sigma factor complement(5229232..5230212) Pseudomonas putida KT2440 1045959 NP_746717.1 CDS PP_4608 NC_002947.3 5230209 5230784 R identified by match to PFAM protein family HMM PF00140; ECF subfamily RNA polymerase sigma factor complement(5230209..5230784) Pseudomonas putida KT2440 1042203 NP_746718.1 CDS PP_4609 NC_002947.3 5230790 5231116 R hypothetical protein complement(5230790..5231116) Pseudomonas putida KT2440 1042229 NP_746719.1 CDS PP_4610 NC_002947.3 5231116 5233041 R identified by match to PFAM protein family HMM PF03977; PepSY-associated TM helix domain-containing protein complement(5231116..5233041) Pseudomonas putida KT2440 1042401 NP_746720.1 CDS PP_4611 NC_002947.3 5233135 5233647 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this protein may be involved in ferric dicitrate uptake; RNA polymerase sigma factor 5233135..5233647 Pseudomonas putida KT2440 1042506 NP_746721.1 CDS PP_4612 NC_002947.3 5233644 5234570 D similar to GB:L06139, SP:Q02763, and PID:292824; identified by sequence similarity; FecR protein 5233644..5234570 Pseudomonas putida KT2440 1042395 NP_746722.1 CDS fecA NC_002947.3 5234665 5236989 D similar to GB:Z24721, PID:1147590, PID:394739, and PID:404251; identified by sequence similarity; outer membrane iron(III) dicitrate receptor 5234665..5236989 Pseudomonas putida KT2440 1041622 NP_746723.1 CDS PP_4614 NC_002947.3 5237539 5237925 D hypothetical protein 5237539..5237925 Pseudomonas putida KT2440 1042558 NP_746724.1 CDS PP_4615 NC_002947.3 5237929 5238399 R phosphate-starvation-inducible E complement(5237929..5238399) Pseudomonas putida KT2440 1041685 NP_746725.1 CDS PP_4616 NC_002947.3 5238971 5239234 D hypothetical protein 5238971..5239234 Pseudomonas putida KT2440 1042589 NP_746726.1 CDS PP_4617 NC_002947.3 5239293 5240312 R similar to SP:P13154; identified by sequence similarity; leucine dehydrogenase complement(5239293..5240312) Pseudomonas putida KT2440 1042591 NP_746727.1 CDS PP_4618 NC_002947.3 5240437 5241243 D hypothetical protein 5240437..5241243 Pseudomonas putida KT2440 1042694 NP_746728.1 CDS PP_4619 NC_002947.3 5241237 5241869 R identified by match to TIGR protein family HMM TIGR01262; maleylacetoacetate isomerase complement(5241237..5241869) Pseudomonas putida KT2440 1041608 NP_746729.1 CDS PP_4620 NC_002947.3 5241882 5243174 R identified by match to TIGR protein family HMM TIGR01266; fumarylacetoacetase complement(5241882..5243174) Pseudomonas putida KT2440 1044222 NP_746730.1 CDS hmgA NC_002947.3 5243178 5244479 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(5243178..5244479) Pseudomonas putida KT2440 1041590 NP_746731.1 CDS PP_4622 NC_002947.3 5244592 5245425 D identified by match to PFAM protein family HMM PF01614; IclR family transcriptional regulator 5244592..5245425 Pseudomonas putida KT2440 1045444 NP_746732.1 CDS PP_4623 NC_002947.3 5245356 5248658 R hypothetical protein complement(5245356..5248658) Pseudomonas putida KT2440 1042664 NP_746733.1 CDS PP_4624 NC_002947.3 5248914 5249813 R identified by match to TIGR protein family HMM TIGR01738; alpha/beta hydrolase complement(5248914..5249813) Pseudomonas putida KT2440 1043768 NP_746734.1 CDS PP_4625 NC_002947.3 5249996 5250682 R identified by match to PFAM protein family HMM PF04172; LrgB family protein complement(5249996..5250682) Pseudomonas putida KT2440 1042636 NP_746735.1 CDS PP_4626 NC_002947.3 5250672 5251058 R identified by match to PFAM protein family HMM PF03788; LrgA family protein complement(5250672..5251058) Pseudomonas putida KT2440 1042358 NP_746736.1 CDS PP_4627 NC_002947.3 5251156 5252037 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 5251156..5252037 Pseudomonas putida KT2440 1041996 NP_746737.1 CDS mioC NC_002947.3 5252059 5252514 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(5252059..5252514) Pseudomonas putida KT2440 1046104 NP_746738.1 CDS PP_4629 NC_002947.3 5252630 5253058 D similar to GB:L40411, SP:Q15652, and PID:703116; identified by sequence similarity; sensory box protein 5252630..5253058 Pseudomonas putida KT2440 1041712 NP_746739.1 CDS PP_4630 NC_002947.3 5253720 5254631 R identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator complement(5253720..5254631) Pseudomonas putida KT2440 1042483 NP_746740.1 CDS PP_4631 NC_002947.3 5254875 5255435 D hypothetical protein 5254875..5255435 Pseudomonas putida KT2440 1042567 NP_746741.1 CDS PP_4632 NC_002947.3 5255469 5256206 D identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase 5255469..5256206 Pseudomonas putida KT2440 1041920 NP_746742.1 CDS PP_4633 NC_002947.3 5256216 5256512 D hypothetical protein 5256216..5256512 Pseudomonas putida KT2440 1042683 NP_746743.1 CDS PP_4634 NC_002947.3 5256891 5257835 R identified by match to PFAM protein family HMM PF00561; hypothetical protein complement(5256891..5257835) Pseudomonas putida KT2440 1042246 NP_746744.1 CDS PP_4635 NC_002947.3 5257943 5259154 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(5257943..5259154) Pseudomonas putida KT2440 1045719 NP_746745.1 CDS PP_4636 NC_002947.3 5259457 5260635 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5259457..5260635 Pseudomonas putida KT2440 1042451 NP_746746.1 CDS PP_4637 NC_002947.3 5260774 5261598 R identified by match to TIGR protein family HMM TIGR01371; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(5260774..5261598) Pseudomonas putida KT2440 1043831 NP_746747.1 CDS PP_4638 NC_002947.3 5261826 5263313 D identified by match to PFAM protein family HMM PF02219; methylenetetrahydrofolate reductase domain-containing protein 5261826..5263313 Pseudomonas putida KT2440 1043130 NP_746748.1 CDS PP_4639 NC_002947.3 5263273 5264244 R identified by match to PFAM protein family HMM PF02492; CobW/P47K family protein complement(5263273..5264244) Pseudomonas putida KT2440 1045441 NP_746749.1 CDS PP_4640 NC_002947.3 5264328 5264525 R hypothetical protein complement(5264328..5264525) Pseudomonas putida KT2440 1041974 NP_746750.1 CDS cstA NC_002947.3 5264543 5266609 R similar to GP:7741957; identified by sequence similarity; carbon starvation protein CstA complement(5264543..5266609) Pseudomonas putida KT2440 1041584 NP_746751.1 CDS PP_4642 NC_002947.3 5266763 5267149 D type IV pilus assembly PilZ 5266763..5267149 Pseudomonas putida KT2440 1042039 NP_746752.1 CDS PP_4643 NC_002947.3 5267413 5268930 D similar to SP:Q46821; identified by sequence similarity; xanthine/uracil permease 5267413..5268930 Pseudomonas putida KT2440 1042015 NP_746753.1 CDS radA NC_002947.3 5268966 5270336 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(5268966..5270336) Pseudomonas putida KT2440 1041864 NP_746754.1 CDS mscL NC_002947.3 5270513 5270932 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 5270513..5270932 Pseudomonas putida KT2440 1043039 NP_746755.1 CDS PP_4646 NC_002947.3 5271056 5271832 R similar to SP:P28861; identified by sequence similarity; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(5271056..5271832) Pseudomonas putida KT2440 1042143 NP_746756.1 CDS PP_4647 NC_002947.3 5271916 5272755 D identified by match to PFAM protein family HMM PF03472; LuxR family transcriptional regulator 5271916..5272755 Pseudomonas putida KT2440 1046148 NP_746757.1 CDS PP_4648 NC_002947.3 5272852 5273976 D identified by match to PFAM protein family HMM PF03602; rRNA (guanine-N(2)-)-methyltransferase 5272852..5273976 Pseudomonas putida KT2440 1046256 NP_746758.1 CDS PP_4649 NC_002947.3 5274082 5274237 R hypothetical protein complement(5274082..5274237) Pseudomonas putida KT2440 1046271 NP_746759.1 CDS cioB NC_002947.3 5274247 5275254 R similar to GB:M86697, and PID:150672; identified by sequence similarity; cytochrome d ubiquinol oxidase subunit II complement(5274247..5275254) Pseudomonas putida KT2440 1042538 NP_746760.1 CDS cioA NC_002947.3 5275258 5276694 R similar to GB:M86697, PID:150672, GB:M86697, and PID:150672; identified by sequence similarity; ubiquinol oxidase subunit I, cyanide insensitive complement(5275258..5276694) Pseudomonas putida KT2440 1043772 NP_746761.1 CDS PP_4652 NC_002947.3 5277038 5278258 D similar to GP:9950874; identified by sequence similarity; major facilitator superfamily protein 5277038..5278258 Pseudomonas putida KT2440 1043346 NP_746762.1 CDS PP_4653 NC_002947.3 5278488 5279783 D similar to GP:6624219, GB:X66403, SP:Q04844, and PID:560153; identified by sequence similarity; xanthine/uracil/vitamin C permease 5278488..5279783 Pseudomonas putida KT2440 1041775 NP_746763.1 CDS trmA NC_002947.3 5279780 5280865 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5279780..5280865 Pseudomonas putida KT2440 1043741 NP_746764.1 CDS pcaG NC_002947.3 5281003 5281608 R similar to SP:P00436, GB:M33317, SP:P11509, SP:P20853, PID:181270, and PID:825700; identified by sequence similarity; protocatechuate 3,4-dioxygenase subunit alpha complement(5281003..5281608) Pseudomonas putida KT2440 1043359 NP_746765.1 CDS pcaH NC_002947.3 5281619 5282338 R similar to SP:P00437, GB:M30496, SP:P15374, and PID:340074; identified by sequence similarity; protocatechuate 3,4-dioxygenase subunit beta complement(5281619..5282338) Pseudomonas putida KT2440 1041888 NP_746766.1 CDS PP_4657 NC_002947.3 5282472 5283422 D similar to GP:9950976, and GP:9950976; identified by sequence similarity; metallopeptidase, zinc binding 5282472..5283422 Pseudomonas putida KT2440 1041922 NP_746767.1 CDS PP_4658 NC_002947.3 5283594 5285513 D identified by match to PFAM protein family HMM PF03586; methyl-accepting chemotaxis sensory transducer 5283594..5285513 Pseudomonas putida KT2440 1042609 NP_746768.1 CDS ggt-2 NC_002947.3 5285636 5287303 R similar to GB:X62083, GB:M80613, SP:P25440, PID:1370115, PID:182769, PID:2181873, PID:2181875, PID:31472, and PID:577293; identified by sequence similarity; gamma-glutamyltransferase complement(5285636..5287303) Pseudomonas putida KT2440 1041905 NP_746769.1 CDS PP_4660 NC_002947.3 5287421 5288317 R similar to GP:9947848; identified by sequence similarity; LysR family transcriptional regulator complement(5287421..5288317) Pseudomonas putida KT2440 1042047 NP_746770.1 CDS PP_4661 NC_002947.3 5288501 5289172 R identified by match to PFAM protein family HMM PF02525; NAD(P)H dehydrogenase (quinone) complement(5288501..5289172) Pseudomonas putida KT2440 1041831 NP_746771.1 CDS PP_4662 NC_002947.3 5289255 5289569 D similar to GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, PID:758071, GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, and PID:758071; identified by sequence similarity; antibiotic biosynthesis monooxygenase 5289255..5289569 Pseudomonas putida KT2440 1042027 NP_746772.1 CDS PP_4663 NC_002947.3 5289559 5290323 R hypothetical protein complement(5289559..5290323) Pseudomonas putida KT2440 1045216 NP_746773.1 CDS PP_4664 NC_002947.3 5290401 5291282 D similar to GP:3419687; identified by sequence similarity; LysR family transcriptional regulator 5290401..5291282 Pseudomonas putida KT2440 1041906 NP_746774.1 CDS PP_4665 NC_002947.3 5291424 5291768 D hypothetical protein 5291424..5291768 Pseudomonas putida KT2440 1041979 NP_746775.1 CDS mmsB NC_002947.3 5291960 5292847 R similar to GB:X16396, SP:P13995, and PID:35071; identified by sequence similarity; 3-hydroxyisobutyrate dehydrogenase complement(5291960..5292847) Pseudomonas putida KT2440 1041909 NP_746776.1 CDS mmsA-2 NC_002947.3 5292858 5294384 R similar to GP:7160985, and SP:P28810; identified by sequence similarity; methylmalonate-semialdehyde dehydrogenase complement(5292858..5294384) Pseudomonas putida KT2440 1045894 NP_746777.1 CDS PP_4668 NC_002947.3 5294517 5295467 D similar to GP:9948295; identified by sequence similarity; LysR family transcriptional regulator 5294517..5295467 Pseudomonas putida KT2440 1045409 NP_746778.1 CDS PP_4669 NC_002947.3 5295593 5296111 R identified by match to PFAM protein family HMM PF00691; OmpA/MotB domain-containing protein complement(5295593..5296111) Pseudomonas putida KT2440 1045078 NP_746779.1 CDS PP_4670 NC_002947.3 5296089 5297360 R identified by match to PFAM protein family HMM PF00990; diguanylate cyclase complement(5296089..5297360) Pseudomonas putida KT2440 1041910 NP_746780.1 CDS PP_4671 NC_002947.3 5297357 5297923 R hypothetical protein complement(5297357..5297923) Pseudomonas putida KT2440 1042478 NP_746781.1 CDS recD NC_002947.3 5298024 5300099 R similar to GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; exodeoxyribonuclease V subunit alpha complement(5298024..5300099) Pseudomonas putida KT2440 1041840 NP_746782.1 CDS recB NC_002947.3 5300096 5303770 R similar to GB:L13857, and PID:306778; identified by sequence similarity; exodeoxyribonuclease V subunit beta complement(5300096..5303770) Pseudomonas putida KT2440 1041961 NP_746783.1 CDS recC NC_002947.3 5303767 5307249 R similar to GB:M68516, GB:S69366, GB:S69363, GB:S69364, GB:S69574, GB:S69365, GB:J02639, GB:S58545, GB:U35464, SP:P05154, PID:1144561, PID:180550, and PID:189678; identified by sequence similarity; exodeoxyribonuclease V subunit gamma complement(5303767..5307249) Pseudomonas putida KT2440 1045224 NP_746784.1 CDS PP_4675 NC_002947.3 5313393 5313986 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(5313393..5313986) Pseudomonas putida KT2440 1045171 NP_746785.1 CDS PP_4676 NC_002947.3 5313986 5315011 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(5313986..5315011) Pseudomonas putida KT2440 1044253 NP_746786.1 CDS pssA-2 NC_002947.3 5315079 5315930 R identified by match to PFAM protein family HMM PF03653; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(5315079..5315930) Pseudomonas putida KT2440 1041981 NP_746787.1 CDS ilvC NC_002947.3 5316081 5317097 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(5316081..5317097) Pseudomonas putida KT2440 1041985 NP_746788.1 CDS ilvH NC_002947.3 5317154 5317645 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(5317154..5317645) Pseudomonas putida KT2440 1044684 NP_746789.1 CDS ilvB NC_002947.3 5317647 5319371 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit complement(5317647..5319371) Pseudomonas putida KT2440 1041966 NP_746790.1 CDS PP_4681 NC_002947.3 5319780 5320115 R identified by match to PFAM protein family HMM PF04287; hypothetical protein complement(5319780..5320115) Pseudomonas putida KT2440 1042017 NP_746791.1 CDS PP_4682 NC_002947.3 5320112 5320912 R identified by match to PFAM protein family HMM PF00515; hypothetical protein complement(5320112..5320912) Pseudomonas putida KT2440 1044656 NP_746792.1 CDS mrcB NC_002947.3 5320928 5323249 R similar to SP:P02919; identified by sequence similarity; penicillin-binding protein 1B complement(5320928..5323249) Pseudomonas putida KT2440 1044197 NP_746793.1 CDS PP_4684 NC_002947.3 5323419 5324927 D hypothetical protein 5323419..5324927 Pseudomonas putida KT2440 1041841 NP_746794.1 CDS PP_4685 NC_002947.3 5325086 5325364 D similar to GP:9950961; identified by sequence similarity; hypothetical protein 5325086..5325364 Pseudomonas putida KT2440 1045225 NP_746795.1 CDS PP_4686 NC_002947.3 5325545 5326429 R similar to GP:9950963; identified by sequence similarity; hypothetical protein complement(5325545..5326429) Pseudomonas putida KT2440 1042034 NP_746796.1 CDS hmuV NC_002947.3 5326532 5327299 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(5326532..5327299) Pseudomonas putida KT2440 1042001 NP_746797.1 CDS PP_4688 NC_002947.3 5327299 5328336 R identified by match to PFAM protein family HMM PF04133; transport system permease complement(5327299..5328336) Pseudomonas putida KT2440 1045897 NP_746798.1 CDS PP_4689 NC_002947.3 5328333 5329217 R identified by match to PFAM protein family HMM PF01497; hypothetical protein complement(5328333..5329217) Pseudomonas putida KT2440 1045844 NP_746799.1 CDS PP_4690 NC_002947.3 5329366 5329710 D identified by match to PFAM protein family HMM PF00355; 2Fe-2S protein 5329366..5329710 Pseudomonas putida KT2440 1044139 NP_746800.1 CDS sfsA NC_002947.3 5329673 5330386 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(5329673..5330386) Pseudomonas putida KT2440 1044194 NP_746801.1 CDS PP_4692 NC_002947.3 5330386 5331558 R identified by match to PFAM protein family HMM PF00155; hypothetical protein complement(5330386..5331558) Pseudomonas putida KT2440 1043754 NP_746802.1 CDS PP_4693 NC_002947.3 5331769 5332215 D identified by match to PFAM protein family HMM PF01258; C4-type zinc finger DksA/TraR family protein 5331769..5332215 Pseudomonas putida KT2440 1045879 NP_746803.1 CDS PP_4694 NC_002947.3 5332264 5333166 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 5332264..5333166 Pseudomonas putida KT2440 1043052 NP_746804.1 CDS PP_4695 NC_002947.3 5333569 5336544 D identified by match to PFAM protein family HMM PF04306; multi-sensor signal transduction histidine kinase 5333569..5336544 Pseudomonas putida KT2440 1044374 NP_746805.1 CDS PP_4696 NC_002947.3 5336549 5337991 D identified by match to PFAM protein family HMM PF00072; Fis family transcriptional regulator 5336549..5337991 Pseudomonas putida KT2440 1044198 NP_746806.1 CDS pcnB NC_002947.3 5338771 5340153 D similar to GP:3650360, and SP:P13685; identified by sequence similarity; poly(A) polymerase 5338771..5340153 Pseudomonas putida KT2440 1045263 NP_746807.1 CDS folK-2 NC_002947.3 5340150 5340629 D similar to SP:O87790, and SP:O87790; identified by sequence similarity; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 5340150..5340629 Pseudomonas putida KT2440 1045101 NP_746808.1 CDS panB NC_002947.3 5340892 5341692 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 5340892..5341692 Pseudomonas putida KT2440 1041965 NP_746809.1 CDS panC NC_002947.3 5341689 5342552 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 5341689..5342552 Pseudomonas putida KT2440 1042036 NP_746810.1 CDS pgi NC_002947.3 5342759 5344423 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 5342759..5344423 Pseudomonas putida KT2440 1045885 NP_746811.1 CDS acsB NC_002947.3 5344601 5346535 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 5344601..5346535 Pseudomonas putida KT2440 1041843 NP_746812.1 CDS PP_4703 NC_002947.3 5346577 5347446 D hypothetical protein 5346577..5347446 Pseudomonas putida KT2440 1041870 NP_746813.1 CDS PP_4704 NC_002947.3 5347525 5350461 D hypothetical protein 5347525..5350461 Pseudomonas putida KT2440 1042000 NP_746814.1 CDS PP_4705 NC_002947.3 5350543 5350956 R similar to GP:9949526, and SP:P47243; identified by sequence similarity; glyoxalase/bleomycin resistance protein/dioxygenase complement(5350543..5350956) Pseudomonas putida KT2440 1043845 NP_746815.1 CDS PP_4706 NC_002947.3 5351017 5351319 D identified by match to PFAM protein family HMM PF02619; antibiotic biosynthesis monooxygenase 5351017..5351319 Pseudomonas putida KT2440 1043478 NP_746816.1 CDS PP_4707 NC_002947.3 5351395 5351745 R similar to GB:M18731, and PID:182949; identified by sequence similarity; transport-associated protein complement(5351395..5351745) Pseudomonas putida KT2440 1041940 NP_746817.1 CDS pnp NC_002947.3 5352009 5354114 R similar to SP:O87792, and SP:P05055; identified by sequence similarity; polynucleotide phosphorylase complement(5352009..5354114) Pseudomonas putida KT2440 1045958 NP_746818.2 CDS rpsO NC_002947.3 5354365 5354634 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(5354365..5354634) Pseudomonas putida KT2440 1043991 NP_746819.1 CDS rbfA NC_002947.3 5355703 5356101 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(5355703..5356101) Pseudomonas putida KT2440 1043934 NP_746820.1 CDS infB NC_002947.3 5356218 5358758 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(5356218..5358758) Pseudomonas putida KT2440 1042494 NP_746821.1 CDS nusA NC_002947.3 5358786 5360267 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(5358786..5360267) Pseudomonas putida KT2440 1042024 NP_746822.1 CDS PP_4714 NC_002947.3 5360327 5360836 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(5360327..5360836) Pseudomonas putida KT2440 1041880 NP_746823.1 CDS tpiA NC_002947.3 5361602 5362357 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(5361602..5362357) Pseudomonas putida KT2440 1042365 NP_746824.1 CDS glmM NC_002947.3 5362423 5363763 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(5362423..5363763) Pseudomonas putida KT2440 1043206 NP_746825.1 CDS folP NC_002947.3 5363780 5364631 R similar to SP:P26282, and SP:P26282; identified by sequence similarity; dihydropteroate synthase complement(5363780..5364631) Pseudomonas putida KT2440 1042366 NP_746826.1 CDS ftsH NC_002947.3 5364640 5366553 R similar to GB:M15502, SP:P07954, PID:1545996, and PID:182794; identified by sequence similarity; ATP-dependent metalloprotease FtsH complement(5364640..5366553) Pseudomonas putida KT2440 1045877 NP_746827.1 CDS rrmJ NC_002947.3 5366751 5367374 R similar to GB:M64351, GB:L26244, GB:X57727, GB:M62379, and PID:339359; identified by sequence similarity; ribosomal RNA methyltransferase RrmJ/FtsJ complement(5366751..5367374) Pseudomonas putida KT2440 1043387 NP_746828.1 CDS PP_4720 NC_002947.3 5367402 5367785 D similar to GB:X65584, PID:39092, PID:1480839, GB:X65584, PID:39092, and PID:1480839; identified by sequence similarity; hypothetical protein 5367402..5367785 Pseudomonas putida KT2440 1043016 NP_746829.1 CDS PP_4721 NC_002947.3 5367798 5368268 R hypothetical protein complement(5367798..5368268) Pseudomonas putida KT2440 1043343 NP_746830.1 CDS greA NC_002947.3 5368225 5368707 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(5368225..5368707) Pseudomonas putida KT2440 1045262 NP_746831.2 CDS carB NC_002947.3 5368704 5371925 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(5368704..5371925) Pseudomonas putida KT2440 1042416 NP_746832.1 CDS carA NC_002947.3 5372031 5373167 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(5372031..5373167) Pseudomonas putida KT2440 1041946 NP_746833.1 CDS dapB NC_002947.3 5373494 5374297 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(5373494..5374297) Pseudomonas putida KT2440 1043973 NP_746834.1 CDS dnaJ NC_002947.3 5374311 5375438 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(5374311..5375438) Pseudomonas putida KT2440 1041678 NP_746835.1 CDS dnaK NC_002947.3 5375637 5377562 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(5375637..5377562) Pseudomonas putida KT2440 1046079 NP_746836.1 CDS grpE NC_002947.3 5377664 5378221 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(5377664..5378221) Pseudomonas putida KT2440 1042995 NP_746837.1 CDS recN NC_002947.3 5378414 5380087 D identified by match to TIGR protein family HMM TIGR00634; DNA repair protein RecN 5378414..5380087 Pseudomonas putida KT2440 1043650 NP_746838.1 CDS fur NC_002947.3 5380195 5380599 R similar to GB:U09067, PID:483876, PID:553456, GB:U09067, PID:483876, and PID:553456; identified by sequence similarity; Fur family ferric uptake regulator complement(5380195..5380599) Pseudomonas putida KT2440 1043079 NP_746839.1 CDS omlA NC_002947.3 5380697 5381233 D similar to SP:O68564; identified by sequence similarity; SmpA/OmlA domain-containing protein 5380697..5381233 Pseudomonas putida KT2440 1042313 NP_746840.1 CDS PP_4732 NC_002947.3 5381298 5381846 R identified by match to PFAM protein family HMM PF03654; cyclase complement(5381298..5381846) Pseudomonas putida KT2440 1045268 NP_746841.1 CDS smpB NC_002947.3 5381896 5382378 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 5381896..5382378 Pseudomonas putida KT2440 1042980 NP_746842.1 CDS PP_4734 NC_002947.3 5382511 5383278 R identified by match to PFAM protein family HMM PF00392; GntR family transcriptional regulator complement(5382511..5383278) Pseudomonas putida KT2440 1043143 NP_746843.1 CDS lctP NC_002947.3 5383535 5385205 D identified by match to PFAM protein family HMM PF03977; L-lactate transport 5383535..5385205 Pseudomonas putida KT2440 1045884 NP_746844.1 CDS lldD NC_002947.3 5385268 5386413 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 5385268..5386413 Pseudomonas putida KT2440 1043044 NP_746845.1 CDS PP_4737 NC_002947.3 5386489 5389299 D identified by match to PFAM protein family HMM PF02913; D-lactate dehydrogenase 5386489..5389299 Pseudomonas putida KT2440 1042275 NP_746846.1 CDS PP_4738 NC_002947.3 5389619 5389909 D similar to GP:9948479; identified by sequence similarity; hypothetical protein 5389619..5389909 Pseudomonas putida KT2440 1042279 NP_746847.1 CDS PP_4739 NC_002947.3 5390767 5391009 D similar to GP:3881569; identified by sequence similarity; hypothetical protein 5390767..5391009 Pseudomonas putida KT2440 1042985 NP_746848.1 CDS hsdR NC_002947.3 5393057 5395420 D similar to GB:J04569, GB:M26638, SP:P14136, PID:183075, PID:553302, GB:J04569, GB:M26638, SP:P14136, PID:183075, and PID:553302; identified by sequence similarity; type I restriction-modification system, R subunit 5393057..5395420 Pseudomonas putida KT2440 1043007 NP_746849.1 CDS hsdM NC_002947.3 5395521 5396990 D similar to GB:U12011; identified by sequence similarity; type I restriction-modification system, M subunit 5395521..5396990 Pseudomonas putida KT2440 1045919 NP_746850.1 CDS hsdS NC_002947.3 5396987 5398717 D similar to SP:P19705, and SP:P19705; identified by sequence similarity; type I restriction-modification system subunit S 5396987..5398717 Pseudomonas putida KT2440 1042031 NP_746851.1 CDS PP_4743 NC_002947.3 5399186 5400622 D hypothetical protein 5399186..5400622 Pseudomonas putida KT2440 1045098 NP_746852.1 CDS PP_4745 NC_002947.3 5401790 5403322 R similar to GP:8037785, and GP:8037785; identified by sequence similarity; ISPpu15, transposase Orf2 complement(5401790..5403322) Pseudomonas putida KT2440 1045235 NP_746853.1 CDS PP_4746 NC_002947.3 5403341 5403700 R similar to GP:5824138, and GP:8037784; identified by sequence similarity; ISPpu15, transposase Orf1 complement(5403341..5403700) Pseudomonas putida KT2440 1043084 NP_746854.1 CDS PP_4748 NC_002947.3 5404417 5405217 R identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein complement(5404417..5405217) Pseudomonas putida KT2440 1045252 NP_746855.1 CDS PP_4749 NC_002947.3 5405308 5405967 R similar to GB:L24552, SP:P41109, and PID:404080; identified by sequence similarity; amino acid ABC transporter permease complement(5405308..5405967) Pseudomonas putida KT2440 1045904 NP_746856.1 CDS PP_4750 NC_002947.3 5405964 5406605 R similar to GB:L24552, SP:P41109, and PID:404080; identified by sequence similarity; amino acid ABC transporter permease complement(5405964..5406605) Pseudomonas putida KT2440 1041949 NP_746857.1 CDS PP_4751 NC_002947.3 5406605 5407414 R similar to SP:P35651, and PID:550405; identified by sequence similarity; amino acid ABC transporter ATP-binding protein complement(5406605..5407414) Pseudomonas putida KT2440 1042231 NP_746858.1 CDS PP_4752 NC_002947.3 5407428 5408735 R similar to GP:3372642; identified by sequence similarity; aminopeptidase complement(5407428..5408735) Pseudomonas putida KT2440 1041847 NP_746859.1 CDS PP_4753 NC_002947.3 5408837 5410873 R similar to SP:O87278, and SP:O87278; identified by sequence similarity; N-methylproline demethylase complement(5408837..5410873) Pseudomonas putida KT2440 1046265 NP_746860.1 CDS PP_4754 NC_002947.3 5410997 5411644 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 5410997..5411644 Pseudomonas putida KT2440 1041945 NP_746861.1 CDS PP_4755 NC_002947.3 5411774 5414167 R similar to GP:2981048, GB:M31516, GB:M30142, SP:P08174, and PID:181476; identified by sequence similarity; TonB-dependent siderophore receptor complement(5411774..5414167) Pseudomonas putida KT2440 1041681 NP_746862.1 CDS PP_4756 NC_002947.3 5414383 5415774 R similar to GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; amino acid permease complement(5414383..5415774) Pseudomonas putida KT2440 1041978 NP_746863.1 CDS PP_4757 NC_002947.3 5416335 5417681 R similar to GB:S95936, GB:M17610, GB:M17611, GB:M17612, GB:M17613, GB:M17614, GB:M12525, GB:M26641, GB:M21570, GB:M11372, GB:M11361, GB:M11362, GB:M11363, GB:M11364, GB:M11365, GB:M11366, GB:M11367, GB:M11368, GB:M11369, GB:M11370, GB:M11371, SP:P02787, PID:339453, PID:339469, PID:339475, PID:339485, PID:339486, PID:339989, PID:553788, GB:S95936, GB:M17610, GB:M17611, GB:M17612, GB:M17613, GB:M17614, GB:M12525, GB:M26641, GB:M21570, GB:M11372, GB:M11361, GB:M11362, GB:M11363, GB:M11364, GB:M11365, GB:M11366, GB:M11367, GB:M11368, GB:M11369, GB:M11370, GB:M11371, SP:P02787, PID:339453, PID:339469, PID:339475, PID:339485, PID:339486, PID:339989, and PID:553788; identified by sequence similarity; glucarate dehydratase complement(5416335..5417681) Pseudomonas putida KT2440 1043094 NP_746864.1 CDS PP_4758 NC_002947.3 5417701 5419068 R similar to GP:6714755; identified by sequence similarity; major facilitator family transporter complement(5417701..5419068) Pseudomonas putida KT2440 1041916 NP_746865.1 CDS PP_4759 NC_002947.3 5419235 5420014 D similar to GP:6573304; identified by sequence similarity; GntR family transcriptional regulator 5419235..5420014 Pseudomonas putida KT2440 1041852 NP_746866.1 CDS PP_4760 NC_002947.3 5420086 5421096 R similar to GP:6740905; identified by sequence similarity; zinc-containing alcohol dehydrogenase complement(5420086..5421096) Pseudomonas putida KT2440 1043030 NP_746867.1 CDS PP_4761 NC_002947.3 5421261 5421851 R similar to GP:9950128; identified by sequence similarity; HAD superfamily hydrolase complement(5421261..5421851) Pseudomonas putida KT2440 1042571 NP_746868.1 CDS tesB NC_002947.3 5421848 5422717 R identified by match to TIGR protein family HMM TIGR00189; acyl-CoA thioesterase complement(5421848..5422717) Pseudomonas putida KT2440 1041917 NP_746869.1 CDS PP_4763 NC_002947.3 5422867 5423403 R identified by match to PFAM protein family HMM PF00583; acetyltransferase complement(5422867..5423403) Pseudomonas putida KT2440 1042823 NP_746870.1 CDS PP_4764 NC_002947.3 5424400 5425314 D similar to GB:M62420, GB:J04056, GB:X88010, SP:P16152, PID:179978, and PID:181037; identified by sequence similarity; histone deacetylase superfamily protein 5424400..5425314 Pseudomonas putida KT2440 1042896 NP_746871.1 CDS PP_4765 NC_002947.3 5425463 5426701 D identified by match to TIGR protein family HMM TIGR00275; hypothetical protein 5425463..5426701 Pseudomonas putida KT2440 1046073 NP_746872.1 CDS PP_4766 NC_002947.3 5426769 5428100 R identified by match to PFAM protein family HMM PF00271; DEAD/DEAH box helicase complement(5426769..5428100) Pseudomonas putida KT2440 1041883 NP_746873.1 CDS PP_4767 NC_002947.3 5428156 5429076 R identified by match to PFAM protein family HMM PF04172; hypothetical protein complement(5428156..5429076) Pseudomonas putida KT2440 1042894 NP_746874.1 CDS PP_4768 NC_002947.3 5429216 5429827 R identified by match to PFAM protein family HMM PF00929; DNA polymerase III subunit epsilon complement(5429216..5429827) Pseudomonas putida KT2440 1042958 NP_746875.1 CDS PP_4769 NC_002947.3 5429837 5430316 R identified by match to PFAM protein family HMM PF01936; hypothetical protein complement(5429837..5430316) Pseudomonas putida KT2440 1042932 NP_746876.1 CDS PP_4770 NC_002947.3 5430477 5431235 R identified by match to PFAM protein family HMM PF00639; periplasmic ligand-binding sensor protein complement(5430477..5431235) Pseudomonas putida KT2440 1041717 NP_746877.1 CDS PP_4771 NC_002947.3 5431403 5432059 D similar to GP:9950143; identified by sequence similarity; hypothetical protein 5431403..5432059 Pseudomonas putida KT2440 1045872 NP_746878.1 CDS hrpB NC_002947.3 5432733 5435261 R similar to SP:P37024; identified by sequence similarity; ATP-dependent helicase HrpB complement(5432733..5435261) Pseudomonas putida KT2440 1042828 NP_746879.1 CDS PP_4773 NC_002947.3 5435315 5435797 D similar to GP:9950151; identified by sequence similarity; hypothetical protein 5435315..5435797 Pseudomonas putida KT2440 1042377 NP_746880.1 CDS PP_4774 NC_002947.3 5435820 5436692 D identified by match to TIGR protein family HMM TIGR01297; cation diffusion facilitator family transporter 5435820..5436692 Pseudomonas putida KT2440 1042045 NP_746881.1 CDS PP_4775 NC_002947.3 5436720 5437709 R hypothetical protein complement(5436720..5437709) Pseudomonas putida KT2440 1042931 NP_746882.1 CDS PP_4776 NC_002947.3 5437952 5438428 D identified by match to PFAM protein family HMM PF01037; AsnC family transcriptional regulator 5437952..5438428 Pseudomonas putida KT2440 1042959 NP_746883.1 CDS PP_4777 NC_002947.3 5438482 5438685 D similar to GP:9950155; identified by sequence similarity; hypothetical protein 5438482..5438685 Pseudomonas putida KT2440 1042936 NP_746884.2 CDS PP_4779 NC_002947.3 5439360 5440823 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(5439360..5440823) Pseudomonas putida KT2440 1041881 NP_746885.1 CDS PP_4780 NC_002947.3 5440929 5442581 R identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase complement(5440929..5442581) Pseudomonas putida KT2440 1042068 NP_746886.1 CDS PP_4781 NC_002947.3 5442789 5444777 R identified by match to PFAM protein family HMM PF02518; integral membrane sensor signal transduction histidine kinase complement(5442789..5444777) Pseudomonas putida KT2440 1045745 NP_746887.1 CDS thiD NC_002947.3 5445043 5445840 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 5445043..5445840 Pseudomonas putida KT2440 1041826 NP_746888.1 CDS thiE NC_002947.3 5445854 5446477 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 5445854..5446477 Pseudomonas putida KT2440 1042405 NP_746889.1 CDS hemL NC_002947.3 5446494 5447777 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 5446494..5447777 Pseudomonas putida KT2440 1042981 NP_746890.1 CDS PP_4785 NC_002947.3 5448022 5448567 D similar to GB:U04209, SP:P55081, PID:434656, GB:U04209, SP:P55081, and PID:434656; identified by sequence similarity; Sel1 domain-containing protein repeat-containing protein 5448022..5448567 Pseudomonas putida KT2440 1042967 NP_746891.1 CDS PP_4786 NC_002947.3 5448571 5448897 R similar to GP:9950170; identified by sequence similarity; hypothetical protein complement(5448571..5448897) Pseudomonas putida KT2440 1043434 NP_746892.1 CDS PP_4787 NC_002947.3 5449130 5450128 D identified by match to PFAM protein family HMM PF02562; PhoH family protein 5449130..5450128 Pseudomonas putida KT2440 1042993 NP_746893.1 CDS PP_4788 NC_002947.3 5450121 5450594 D identified by match to TIGR protein family HMM TIGR00043; metalloprotease 5450121..5450594 Pseudomonas putida KT2440 1046266 NP_746894.1 CDS PP_4789 NC_002947.3 5450620 5451459 D similar to SP:Q9R874; identified by sequence similarity; hypothetical protein 5450620..5451459 Pseudomonas putida KT2440 1042537 NP_746895.1 CDS lnt NC_002947.3 5451468 5452985 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 5451468..5452985 Pseudomonas putida KT2440 1044913 NP_746896.1 CDS PP_4791 NC_002947.3 5453340 5454668 D similar to GP:6723233; identified by sequence similarity; ISPpu9, transposase 5453340..5454668 Pseudomonas putida KT2440 1042861 NP_746897.1 CDS PP_4792 NC_002947.3 5454829 5455590 R identified by match to PFAM protein family HMM PF02698; hypothetical protein complement(5454829..5455590) Pseudomonas putida KT2440 1042910 NP_746898.1 CDS PP_4793 NC_002947.3 5455725 5456039 R similar to GP:9950177; identified by sequence similarity; hypothetical protein complement(5455725..5456039) Pseudomonas putida KT2440 1041677 NP_746899.1 CDS leuS NC_002947.3 5456267 5458873 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 5456267..5458873 Pseudomonas putida KT2440 1042400 NP_746900.1 CDS PP_4795 NC_002947.3 5458935 5459540 D similar to GP:9950179; identified by sequence similarity; rare lipoprotein B 5458935..5459540 Pseudomonas putida KT2440 1042254 NP_746901.1 CDS holA NC_002947.3 5459580 5460617 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 5459580..5460617 Pseudomonas putida KT2440 1041615 NP_746902.1 CDS PP_4797 NC_002947.3 5460834 5460998 D identified by match to PFAM protein family HMM PF03889; hypothetical protein 5460834..5460998 Pseudomonas putida KT2440 1042983 NP_746903.1 CDS PP_4798 NC_002947.3 5461059 5462375 D identified by match to PFAM protein family HMM PF01471; lytic murein transglycosylase 5461059..5462375 Pseudomonas putida KT2440 1041890 NP_746904.1 CDS PP_4799 NC_002947.3 5462408 5463346 R similar to SP:Q9ZBI5, SP:P17996, GB:D26486, GB:X53034, PID:44166, and PID:804883; identified by sequence similarity; muramoyltetrapeptide carboxypeptidase complement(5462408..5463346) Pseudomonas putida KT2440 1042920 NP_746905.1 CDS lipA NC_002947.3 5463445 5464461 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(5463445..5464461) Pseudomonas putida KT2440 1041614 NP_746906.1 CDS lipB NC_002947.3 5464464 5465114 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(5464464..5465114) Pseudomonas putida KT2440 1045269 NP_746907.1 CDS PP_4802 NC_002947.3 5465111 5465386 R hypothetical protein complement(5465111..5465386) Pseudomonas putida KT2440 1041854 NP_746908.1 CDS dacA NC_002947.3 5465460 5466620 R similar to GP:4887207, GB:M19722, GB:K03219, SP:P09769, PID:1335011, PID:182574, PID:182588, PID:338463, PID:553223, and PID:553286; identified by sequence similarity; serine-type D-Ala-D-Ala carboxypeptidase complement(5465460..5466620) Pseudomonas putida KT2440 1042250 NP_746909.1 CDS PP_4804 NC_002947.3 5466841 5467842 R similar to GP:4887206; identified by sequence similarity; rare lipoprotein A family complement(5466841..5467842) Pseudomonas putida KT2440 1043058 NP_746910.1 CDS mltB NC_002947.3 5467842 5468888 R similar to GB:S67291, GB:S67292, GB:S67294, GB:X51943, GB:M13361, GB:M60515, GB:M60516, GB:M60518, GB:M60519, GB:M60520, GB:M60521, GB:X59065, GB:X65778, GB:X59612, SP:P05230, PID:181942, PID:182559, PID:292022, PID:292027, PID:32436, PID:386768, PID:396164, PID:396166, PID:553170, and PID:553171; identified by sequence similarity; lytic murein transglycosylase B complement(5467842..5468888) Pseudomonas putida KT2440 1043075 NP_746911.1 CDS rodA NC_002947.3 5468870 5469994 R similar to GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, and PID:32672; identified by sequence similarity; rod shape-determining protein RodA complement(5468870..5469994) Pseudomonas putida KT2440 1041850 NP_746912.1 CDS mrdA-2 NC_002947.3 5470012 5471901 R similar to GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; penicillin-binding protein 2 complement(5470012..5471901) Pseudomonas putida KT2440 1041858 NP_746913.2 CDS PP_4808 NC_002947.3 5471918 5472385 R SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(5471918..5472385) Pseudomonas putida KT2440 1042986 NP_746914.1 CDS PP_4809 NC_002947.3 5472396 5472815 R identified by match to PFAM protein family HMM PF02410; iojap family protein complement(5472396..5472815) Pseudomonas putida KT2440 1041679 NP_746915.1 CDS nadD NC_002947.3 5472859 5473551 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(5472859..5473551) Pseudomonas putida KT2440 1042501 NP_746916.1 CDS proA NC_002947.3 5473520 5474791 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(5473520..5474791) Pseudomonas putida KT2440 1042960 NP_746917.1 CDS PP_4812 NC_002947.3 5475097 5475765 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 5475097..5475765 Pseudomonas putida KT2440 1042584 NP_746918.1 CDS PP_4813 NC_002947.3 5475768 5477084 D identified by match to PFAM protein family HMM PF04279; PAP2 family protein/DedA family protein 5475768..5477084 Pseudomonas putida KT2440 1041994 NP_746919.1 CDS PP_4814 NC_002947.3 5477196 5477789 R identified by match to PFAM protein family HMM PF02190; ATP-dependent protease La complement(5477196..5477789) Pseudomonas putida KT2440 1041926 NP_746920.1 CDS PP_4815 NC_002947.3 5477796 5478512 R similar to GP:9950206; identified by sequence similarity; LrgB family protein complement(5477796..5478512) Pseudomonas putida KT2440 1042937 NP_746921.1 CDS PP_4816 NC_002947.3 5478509 5478877 R similar to GP:9950207; identified by sequence similarity; LrgA family protein complement(5478509..5478877) Pseudomonas putida KT2440 1045700 NP_746922.1 CDS PP_4817 NC_002947.3 5479015 5479470 D identified by match to PFAM protein family HMM PF01575; acyl dehydratase MaoC 5479015..5479470 Pseudomonas putida KT2440 1045908 NP_746923.2 CDS prmA NC_002947.3 5479588 5480466 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5479588..5480466 Pseudomonas putida KT2440 1043073 NP_746924.1 CDS PP_4819 NC_002947.3 5480509 5481864 D Zinc finger-domain-containing protein 5480509..5481864 Pseudomonas putida KT2440 1045946 NP_746925.1 CDS PP_4820 NC_002947.3 5482072 5483085 D identified by match to PFAM protein family HMM PF04131; NifR3 family TIM-barrel protein 5482072..5483085 Pseudomonas putida KT2440 1041701 NP_746926.1 CDS fis NC_002947.3 5483082 5483402 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Fis family transcriptional regulator 5483082..5483402 Pseudomonas putida KT2440 1045805 NP_746927.1 CDS purH NC_002947.3 5483484 5485091 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5483484..5485091 Pseudomonas putida KT2440 1045913 NP_746928.1 CDS purD NC_002947.3 5485238 5486533 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5485238..5486533 Pseudomonas putida KT2440 1043159 NP_746929.1 CDS PP_4824 NC_002947.3 5486669 5489440 D identified by match to PFAM protein family HMM PF04171; integral membrane sensor hybrid histidine kinase 5486669..5489440 Pseudomonas putida KT2440 1041944 NP_746930.1 CDS PP_4825 NC_002947.3 5489516 5490112 D identified by match to PFAM protein family HMM PF01914; multiple antibiotic resistance protein MarC 5489516..5490112 Pseudomonas putida KT2440 1042146 NP_746931.1 CDS cobJ NC_002947.3 5492315 5494012 R similar to GP:9948995; identified by sequence similarity; precorrin-3B C(17)-methyltransferase complement(5492315..5494012) Pseudomonas putida KT2440 1043199 NP_746932.1 CDS cobI NC_002947.3 5494000 5494734 R catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase complement(5494000..5494734) Pseudomonas putida KT2440 1041895 NP_746933.1 CDS cobH NC_002947.3 5494731 5495357 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(5494731..5495357) Pseudomonas putida KT2440 1042403 NP_746934.1 CDS PP_4829 NC_002947.3 5495350 5496681 R identified by match to PFAM protein family HMM PF03460; precorrin-3B synthase complement(5495350..5496681) Pseudomonas putida KT2440 1042946 NP_746935.1 CDS cobL NC_002947.3 5496925 5498136 D identified by match to PFAM protein family HMM PF00590; precorrin-6y C5,15-methyltransferase subunit CbiE 5496925..5498136 Pseudomonas putida KT2440 1045559 NP_746936.1 CDS cbiD NC_002947.3 5498129 5499223 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5498129..5499223 Pseudomonas putida KT2440 1042968 NP_746937.1 CDS cobK NC_002947.3 5499220 5499939 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5499220..5499939 Pseudomonas putida KT2440 1044389 NP_746938.1 CDS PP_4833 NC_002947.3 5500074 5500505 D identified by match to PFAM protein family HMM PF02104; SURF1 domain-containing protein 5500074..5500505 Pseudomonas putida KT2440 1042094 NP_746939.1 CDS PP_4834 NC_002947.3 5500532 5501386 D similar to GB:Z23013, SP:Q08815, and PID:396549; identified by sequence similarity; hypothetical protein 5500532..5501386 Pseudomonas putida KT2440 1041846 NP_746940.1 CDS PP_4835 NC_002947.3 5501605 5501994 D hypothetical protein 5501605..5501994 Pseudomonas putida KT2440 1041610 NP_746941.1 CDS PP_4836 NC_002947.3 5502042 5502527 D identified by match to PFAM protein family HMM PF04314; hypothetical protein 5502042..5502527 Pseudomonas putida KT2440 1045772 NP_746942.1 CDS PP_4837 NC_002947.3 5502550 5502981 D similar to GP:9949964; identified by sequence similarity; hypothetical protein 5502550..5502981 Pseudomonas putida KT2440 1042119 NP_746943.1 CDS oprC NC_002947.3 5503048 5505114 D similar to GB:M90413, PID:153311, GB:M90413, and PID:153311; identified by sequence similarity; TonB-dependent copper receptor 5503048..5505114 Pseudomonas putida KT2440 1041884 NP_746944.1 CDS PP_4839 NC_002947.3 5505171 5506538 D similar to GB:M77806, and PID:143926; identified by sequence similarity; hypothetical protein 5505171..5506538 Pseudomonas putida KT2440 1043147 NP_746945.1 CDS cycA NC_002947.3 5506737 5508143 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5506737..5508143 Pseudomonas putida KT2440 1043154 NP_746946.1 CDS PP_4841 NC_002947.3 5508393 5509658 D branched-chain amino acid ABC transporter substrate-binding protein 5508393..5509658 Pseudomonas putida KT2440 1042286 NP_746947.1 CDS PP_4842 NC_002947.3 5510246 5511286 D identified by match to PFAM protein family HMM PF02653; branched-chain amino acid ABC transporter permease 5510246..5511286 Pseudomonas putida KT2440 1041898 NP_746948.1 CDS PP_4843 NC_002947.3 5511286 5512365 D similar to GP:9951132; identified by sequence similarity; branched-chain amino acid ABC transporter permease 5511286..5512365 Pseudomonas putida KT2440 1043002 NP_746949.1 CDS PP_4844 NC_002947.3 5512362 5513219 D identified by match to PFAM protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 5512362..5513219 Pseudomonas putida KT2440 1041853 NP_746950.1 CDS PP_4845 NC_002947.3 5513373 5514071 D identified by match to PFAM protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 5513373..5514071 Pseudomonas putida KT2440 1042145 NP_746951.1 CDS PP_4846 NC_002947.3 5514103 5514618 D similar to SP:P38106, GB:U10148, GB:U00096, PID:1788925, PID:987647, and PID:994818; identified by sequence similarity; N-acetyltransferase GCN5 5514103..5514618 Pseudomonas putida KT2440 1045112 NP_746952.1 CDS PP_4847 NC_002947.3 5514755 5515060 R hypothetical protein complement(5514755..5515060) Pseudomonas putida KT2440 1041837 NP_746953.1 CDS PP_4848 NC_002947.3 5515063 5516022 R similar to GB:X05615, GB:X06065, GB:X02154, SP:P01266, PID:1335349, PID:1359884, PID:2204216, PID:37174, GB:X05615, GB:X06065, GB:X02154, SP:P01266, PID:1335349, PID:1359884, PID:2204216, and PID:37174; identified by sequence similarity; DnaJ family curved-DNA-binding protein complement(5515063..5516022) Pseudomonas putida KT2440 1041673 NP_746954.1 CDS PP_4849 NC_002947.3 5516187 5517458 D identified by match to PFAM protein family HMM PF00012; molecular chaperone DnaK 5516187..5517458 Pseudomonas putida KT2440 1043134 NP_746955.1 CDS PP_4850 NC_002947.3 5517510 5518577 R identified by match to PFAM protein family HMM PF01594; hypothetical protein complement(5517510..5518577) Pseudomonas putida KT2440 1046078 NP_746956.1 CDS PP_4851 NC_002947.3 5518587 5518907 R similar to SP:P27295; identified by sequence similarity; PsiF repeat protein complement(5518587..5518907) Pseudomonas putida KT2440 1041973 NP_746957.1 CDS PP_4852 NC_002947.3 5518938 5519726 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(5518938..5519726) Pseudomonas putida KT2440 1046091 NP_746958.1 CDS PP_4853 NC_002947.3 5519952 5520833 D identified by match to PFAM protein family HMM PF00892; hypothetical protein 5519952..5520833 Pseudomonas putida KT2440 1041998 NP_746959.1 CDS lip NC_002947.3 5520835 5521782 R similar to GP:3098280, GB:X17644, SP:P15170, PID:1930145, and PID:31921; identified by sequence similarity; alpha/beta hydrolase complement(5520835..5521782) Pseudomonas putida KT2440 1042639 NP_746960.1 CDS PP_4855 NC_002947.3 5521849 5522190 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5521849..5522190 Pseudomonas putida KT2440 1042822 NP_746961.1 CDS PP_4856 NC_002947.3 5522257 5522763 D identified by match to TIGR protein family HMM TIGR00754; bacterioferritin 5522257..5522763 Pseudomonas putida KT2440 1041936 NP_746962.1 CDS PP_4857 NC_002947.3 5522803 5524869 R AsmA family protein complement(5522803..5524869) Pseudomonas putida KT2440 1041952 NP_746963.1 CDS PP_4858 NC_002947.3 5525210 5525707 D similar to GP:8843968; identified by sequence similarity; hypothetical protein 5525210..5525707 Pseudomonas putida KT2440 1041919 NP_746964.1 CDS PP_4859 NC_002947.3 5525830 5526465 D identified by match to PFAM protein family HMM PF00440; TetR family transcriptional regulator 5525830..5526465 Pseudomonas putida KT2440 1041950 NP_746965.1 CDS PP_4860 NC_002947.3 5526485 5527618 D similar to SP:P29954, GB:M25813, SP:P22105, PID:1794184, PID:183070, PID:1841546, PID:2347137, and PID:394794; identified by sequence similarity; N-acylglucosamine 2-epimerase 5526485..5527618 Pseudomonas putida KT2440 1043333 NP_746966.1 CDS PP_4861 NC_002947.3 5527721 5527969 D hypothetical protein 5527721..5527969 Pseudomonas putida KT2440 1043169 NP_746967.1 CDS PP_4862 NC_002947.3 5528019 5528783 R identified by match to PFAM protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(5528019..5528783) Pseudomonas putida KT2440 1041838 NP_746968.1 CDS PP_4863 NC_002947.3 5529377 5530093 R identified by match to PFAM protein family HMM PF00005; branched chain amino acid ABC transporter ATP-binding protein complement(5529377..5530093) Pseudomonas putida KT2440 1042617 NP_746969.1 CDS PP_4864 NC_002947.3 5530090 5530965 R identified by match to PFAM protein family HMM PF00005; branched chain amino acid ABC transporter ATP-binding protein complement(5530090..5530965) Pseudomonas putida KT2440 1042659 NP_746970.1 CDS PP_4865 NC_002947.3 5530962 5532269 R identified by match to PFAM protein family HMM PF02653; inner-membrane translocator complement(5530962..5532269) Pseudomonas putida KT2440 1043236 NP_746971.1 CDS PP_4866 NC_002947.3 5532266 5533180 R identified by match to PFAM protein family HMM PF04306; inner-membrane translocator complement(5532266..5533180) Pseudomonas putida KT2440 1041896 NP_746972.1 CDS PP_4867 NC_002947.3 5533335 5534471 R identified by match to PFAM protein family HMM PF01094; ABC transporter substrate-binding protein complement(5533335..5534471) Pseudomonas putida KT2440 1043170 NP_746973.1 CDS pncB NC_002947.3 5534981 5536189 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5534981..5536189 Pseudomonas putida KT2440 1043392 NP_746974.1 CDS nadE NC_002947.3 5536193 5537020 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5536193..5537020 Pseudomonas putida KT2440 1042383 NP_746975.1 CDS PP_4870 NC_002947.3 5537123 5537572 R similar to GP:11037693, GB:J03799, GB:X15005, GB:S37431, GB:M14199, GB:X61156, GB:U36484, SP:P08865, PID:1125065, PID:34272, and PID:386857; identified by sequence similarity; azurin complement(5537123..5537572) Pseudomonas putida KT2440 1043477 NP_746976.1 CDS PP_4871 NC_002947.3 5537920 5538507 D identified by match to PFAM protein family HMM PF03641; hypothetical protein 5537920..5538507 Pseudomonas putida KT2440 1045422 NP_746977.2 CDS PP_4872 NC_002947.3 5538628 5540928 R identified by match to TIGR protein family HMM TIGR00089; hypothetical protein complement(5538628..5540928) Pseudomonas putida KT2440 1043432 NP_746978.1 CDS dnaB NC_002947.3 5541298 5542695 R unwinds double stranded DNA; replicative DNA helicase complement(5541298..5542695) Pseudomonas putida KT2440 1043397 NP_746979.1 CDS rplI NC_002947.3 5542809 5543255 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(5542809..5543255) Pseudomonas putida KT2440 1041941 NP_746980.1 CDS PP_4875 NC_002947.3 5543276 5544139 R identified by match to PFAM protein family HMM PF03647; hypothetical protein complement(5543276..5544139) Pseudomonas putida KT2440 1042752 NP_746981.1 CDS rpsR NC_002947.3 5544173 5544403 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(5544173..5544403) Pseudomonas putida KT2440 1042057 NP_746982.1 CDS rpsF NC_002947.3 5544432 5544857 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(5544432..5544857) Pseudomonas putida KT2440 1043837 NP_746983.1 CDS PP_4879 NC_002947.3 5545734 5546480 R identified by match to TIGR protein family HMM TIGR00186; RNA methyltransferase complement(5545734..5546480) Pseudomonas putida KT2440 1043851 NP_746984.1 CDS vacB NC_002947.3 5546477 5549050 R similar to SP:P21499; identified by sequence similarity; ribonuclease R complement(5546477..5549050) Pseudomonas putida KT2440 1044105 NP_746985.1 CDS PP_4881 NC_002947.3 5549756 5550769 D similar to SP:P35755; identified by sequence similarity; iron ABC transporter substrate-binding protein 5549756..5550769 Pseudomonas putida KT2440 1044370 NP_746986.1 CDS PP_4882 NC_002947.3 5550769 5552334 D identified by match to PFAM protein family HMM PF03553; binding-protein-dependent transport system inner membrane protein 5550769..5552334 Pseudomonas putida KT2440 1042290 NP_746987.1 CDS PP_4883 NC_002947.3 5552568 5552672 D hypothetical protein 5552568..5552672 Pseudomonas putida KT2440 1044515 NP_746988.1 CDS PP_4885 NC_002947.3 5553366 5554337 R hypothetical protein complement(5553366..5554337) Pseudomonas putida KT2440 1043824 NP_746989.1 CDS PP_4886 NC_002947.3 5554347 5554892 R hypothetical protein complement(5554347..5554892) Pseudomonas putida KT2440 1044456 NP_746990.1 CDS PP_4887 NC_002947.3 5555062 5555520 R hypothetical protein complement(5555062..5555520) Pseudomonas putida KT2440 1043411 NP_746991.1 CDS PP_4888 NC_002947.3 5555691 5557724 R similar to GP:2626833; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer complement(5555691..5557724) Pseudomonas putida KT2440 1041629 NP_746992.1 CDS purA NC_002947.3 5557956 5559248 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(5557956..5559248) Pseudomonas putida KT2440 1041987 NP_746993.1 CDS hisZ NC_002947.3 5559305 5560492 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase complement(5559305..5560492) Pseudomonas putida KT2440 1042009 NP_746994.1 CDS hflC NC_002947.3 5560794 5561663 R identified by match to PFAM protein family HMM PF01145; HflC protein complement(5560794..5561663) Pseudomonas putida KT2440 1041929 NP_746995.1 CDS hflK NC_002947.3 5561663 5562880 R similar to GP:9951222; identified by sequence similarity; HflK protein complement(5561663..5562880) Pseudomonas putida KT2440 1042007 NP_746996.1 CDS hflX NC_002947.3 5562941 5564242 R similar to GB:X58199, SP:P35612, and PID:29369; identified by sequence similarity; GTP-binding protein HflX complement(5562941..5564242) Pseudomonas putida KT2440 1044733 NP_746997.1 CDS hfq NC_002947.3 5564255 5564515 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(5564255..5564515) Pseudomonas putida KT2440 1042020 NP_746998.1 CDS miaA NC_002947.3 5564610 5565581 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(5564610..5565581) Pseudomonas putida KT2440 1044229 NP_746999.1 CDS mutL NC_002947.3 5565583 5567481 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(5565583..5567481) Pseudomonas putida KT2440 1045669 NP_747000.1 CDS PP_4897 NC_002947.3 5567481 5568911 R similar to SP:Q46929; identified by sequence similarity; N-acetylmuramoyl-L-alanine amidase complement(5567481..5568911) Pseudomonas putida KT2440 1046070 NP_747001.1 CDS PP_4898 NC_002947.3 5568923 5569396 R identified by match to TIGR protein family HMM TIGR00150; hypothetical protein complement(5568923..5569396) Pseudomonas putida KT2440 1041957 NP_747002.1 CDS PP_4899 NC_002947.3 5569384 5570244 R identified by match to PFAM protein family HMM PF01256; carbohydrate kinase complement(5569384..5570244) Pseudomonas putida KT2440 1046069 NP_747003.1 CDS PP_4900 NC_002947.3 5570310 5571374 D identified by match to TIGR protein family HMM TIGR00276; (Fe-S)-binding protein 5570310..5571374 Pseudomonas putida KT2440 1041625 NP_747004.1 CDS PP_4901 NC_002947.3 5571515 5572126 R identified by match to PFAM protein family HMM PF03458; hypothetical protein complement(5571515..5572126) Pseudomonas putida KT2440 1045682 NP_747005.1 CDS orn NC_002947.3 5572218 5572760 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(5572218..5572760) Pseudomonas putida KT2440 1041921 NP_747006.1 CDS PP_4903 NC_002947.3 5572913 5573944 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5572913..5573944 Pseudomonas putida KT2440 1045126 NP_747007.1 CDS motB NC_002947.3 5574249 5575289 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(5574249..5575289) Pseudomonas putida KT2440 1044665 NP_747008.1 CDS PP_4905 NC_002947.3 5575293 5576144 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(5575293..5576144) Pseudomonas putida KT2440 1042628 NP_747009.1 CDS PP_4906 NC_002947.3 5576275 5577810 D metal-dependent hydrolase HDOD 5576275..5577810 Pseudomonas putida KT2440 1043640 NP_747010.1 CDS rhdA-2 NC_002947.3 5577855 5578664 D similar to GB:L31881, GB:U07811, SP:Q14938, PID:469041, PID:499621, PID:619726, and PID:619730; identified by sequence similarity; rhodanese domain-containing protein 5577855..5578664 Pseudomonas putida KT2440 1042587 NP_747011.1 CDS psd NC_002947.3 5578674 5579537 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5578674..5579537 Pseudomonas putida KT2440 1041630 NP_747012.1 CDS serB NC_002947.3 5579613 5580860 R similar to GB:L07758, SP:Q13610, and PID:177765; identified by sequence similarity; phosphoserine phosphatase SerB complement(5579613..5580860) Pseudomonas putida KT2440 1041911 NP_747013.1 CDS PP_4910 NC_002947.3 5580962 5582419 D hypothetical protein 5580962..5582419 Pseudomonas putida KT2440 1041709 NP_747014.1 CDS PP_4911 NC_002947.3 5582586 5583341 R identified by match to PFAM protein family HMM PF03886; hypothetical protein complement(5582586..5583341) Pseudomonas putida KT2440 1045243 NP_747015.1 CDS parC NC_002947.3 5583469 5585727 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(5583469..5585727) Pseudomonas putida KT2440 1041770 NP_747016.1 CDS PP_4913 NC_002947.3 5585741 5586259 R similar to GP:9951247, and GP:9951247; identified by sequence similarity; hypothetical protein complement(5585741..5586259) Pseudomonas putida KT2440 1045254 NP_747017.1 CDS PP_4914 NC_002947.3 5586256 5587281 R hypothetical protein complement(5586256..5587281) Pseudomonas putida KT2440 1045212 NP_747018.1 CDS parE NC_002947.3 5587239 5589143 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(5587239..5589143) Pseudomonas putida KT2440 1042640 NP_747019.1 CDS PP_4916 NC_002947.3 5589179 5589922 R hypothetical protein complement(5589179..5589922) Pseudomonas putida KT2440 1044286 NP_747020.1 CDS PP_4917 NC_002947.3 5589919 5590719 R similar to GB:X16302, SP:P18065, PID:179477, PID:306926, PID:33010, and PID:412023; identified by sequence similarity; icc protein complement(5589919..5590719) Pseudomonas putida KT2440 1042746 NP_747021.1 CDS PP_4918 NC_002947.3 5590805 5591257 R hypothetical protein complement(5590805..5591257) Pseudomonas putida KT2440 1046108 NP_747022.1 CDS PP_4919 NC_002947.3 5591248 5591877 R identified by match to TIGR protein family HMM TIGR00052; NUDIX hydrolase complement(5591248..5591877) Pseudomonas putida KT2440 1041588 NP_747023.1 CDS PP_4920 NC_002947.3 5592051 5592797 D lipoprotein 5592051..5592797 Pseudomonas putida KT2440 1043841 NP_747024.1 CDS PP_4921 NC_002947.3 5592766 5594049 R similar to GB:L17309, SP:P39066, PID:348051, PID:2293317, and GB:AL009126; identified by sequence similarity; NCS1 nucleoside transporter complement(5592766..5594049) Pseudomonas putida KT2440 1041710 NP_747025.1 CDS thiC NC_002947.3 5594193 5596073 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(5594193..5596073) Pseudomonas putida KT2440 1041616 NP_747026.1 CDS PP_4923 NC_002947.3 5596495 5597928 D similar to SP:P02930; identified by sequence similarity; TolC family type I secretion outer membrane protein 5596495..5597928 Pseudomonas putida KT2440 1041623 NP_747027.1 CDS PP_4924 NC_002947.3 5598059 5603476 R identified by match to PFAM protein family HMM PF00082; serine protease complement(5598059..5603476) Pseudomonas putida KT2440 1041812 NP_747028.1 CDS PP_4925 NC_002947.3 5603473 5604282 R hypothetical protein complement(5603473..5604282) Pseudomonas putida KT2440 1043439 NP_747029.1 CDS PP_4926 NC_002947.3 5604523 5605941 R identified by match to PFAM protein family HMM PF00529; HlyD family secretion protein complement(5604523..5605941) Pseudomonas putida KT2440 1043321 NP_747030.1 CDS PP_4927 NC_002947.3 5605938 5608133 R identified by match to PFAM protein family HMM PF04144; toxin secretion ABC transporter protein complement(5605938..5608133) Pseudomonas putida KT2440 1043832 NP_747031.1 CDS kdtA NC_002947.3 5608321 5609592 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(5608321..5609592) Pseudomonas putida KT2440 1042620 NP_747032.1 CDS PP_4929 NC_002947.3 5609604 5610509 R identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator complement(5609604..5610509) Pseudomonas putida KT2440 1043862 NP_747033.1 CDS PP_4930 NC_002947.3 5610581 5610913 D identified by match to PFAM protein family HMM PF00893; small multidrug resistance protein 5610581..5610913 Pseudomonas putida KT2440 1041971 NP_747034.1 CDS PP_4931 NC_002947.3 5611002 5612177 D identified by match to TIGR protein family HMM TIGR00136; FAD dependent oxidoreductase 5611002..5612177 Pseudomonas putida KT2440 1043460 NP_747035.1 CDS PP_4932 NC_002947.3 5612174 5612986 D identified by match to PFAM protein family HMM PF00248; aldo/keto reductase 5612174..5612986 Pseudomonas putida KT2440 1041806 NP_747036.1 CDS PP_4933 NC_002947.3 5613045 5614013 D hypothetical protein 5613045..5614013 Pseudomonas putida KT2440 1045109 NP_747037.1 CDS PP_4934 NC_002947.3 5614095 5615516 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(5614095..5615516) Pseudomonas putida KT2440 1043854 NP_747038.1 CDS PP_4935 NC_002947.3 5615647 5617455 R similar to GB:X61177, SP:Q01344, PID:1247445, PID:1247447, PID:186343, PID:186345, PID:186388, PID:33840, PID:33844, PID:36466, and PID:825601; identified by sequence similarity; lipid ABC transporter ATPase/inner membrane protein complement(5615647..5617455) Pseudomonas putida KT2440 1043843 NP_747039.1 CDS PP_4936 NC_002947.3 5617471 5618646 R similar to GP:6742658, and GP:6742658; identified by sequence similarity; O-antigen polymerase complement(5617471..5618646) Pseudomonas putida KT2440 1041818 NP_747040.1 CDS PP_4937 NC_002947.3 5618678 5619352 D similar to GP:4336795, and GP:4336795; identified by sequence similarity; toluene tolerance protein 5618678..5619352 Pseudomonas putida KT2440 1042607 NP_747041.1 CDS PP_4938 NC_002947.3 5619356 5620495 R identified by match to PFAM protein family HMM PF00534; glycosyl transferase family protein complement(5619356..5620495) Pseudomonas putida KT2440 1043864 NP_747042.1 CDS PP_4939 NC_002947.3 5620485 5621258 R similar to GP:4455735; identified by sequence similarity; hypothetical protein complement(5620485..5621258) Pseudomonas putida KT2440 1041873 NP_747043.1 CDS PP_4940 NC_002947.3 5621324 5622280 R identified by match to PFAM protein family HMM PF00534; hypothetical protein complement(5621324..5622280) Pseudomonas putida KT2440 1042446 NP_747044.1 CDS PP_4941 NC_002947.3 5622329 5623732 R LmbE family protein complement(5622329..5623732) Pseudomonas putida KT2440 1043917 NP_747045.1 CDS PP_4942 NC_002947.3 5623729 5624625 R Mig-14 family protein complement(5623729..5624625) Pseudomonas putida KT2440 1041964 NP_747046.1 CDS PP_4943 NC_002947.3 5624625 5625755 R identified by match to PFAM protein family HMM PF00534; glycosyl transferase family protein complement(5624625..5625755) Pseudomonas putida KT2440 1043878 NP_747047.1 CDS PP_4944 NC_002947.3 5625739 5627496 R similar to GP:9951291; identified by sequence similarity; carbamoyltransferase complement(5625739..5627496) Pseudomonas putida KT2440 1042513 NP_747048.1 CDS PP_4945 NC_002947.3 5627689 5628525 R similar to GP:9951306; identified by sequence similarity; hypothetical protein complement(5627689..5628525) Pseudomonas putida KT2440 1043921 NP_747049.1 CDS putP NC_002947.3 5628632 5630110 R similar to GP:6693830, and GP:6693830; identified by sequence similarity; sodium/proline symporter complement(5628632..5630110) Pseudomonas putida KT2440 1041925 NP_747050.1 CDS putA NC_002947.3 5630466 5634419 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 5630466..5634419 Pseudomonas putida KT2440 1043945 NP_747051.1 CDS PP_4948 NC_002947.3 5635628 5637430 D identified by match to PFAM protein family HMM PF00441; acyl-CoA dehydrogenase 5635628..5637430 Pseudomonas putida KT2440 1041683 NP_747052.1 CDS PP_4949 NC_002947.3 5637366 5638904 D identified by match to PFAM protein family HMM PF01523; TldD/PmbA family protein 5637366..5638904 Pseudomonas putida KT2440 1041892 NP_747053.1 CDS PP_4950 NC_002947.3 5638904 5640223 D hypothetical protein 5638904..5640223 Pseudomonas putida KT2440 1041751 NP_747054.1 CDS PP_4951 NC_002947.3 5640333 5641760 D identified by match to TIGR protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 5640333..5641760 Pseudomonas putida KT2440 1043960 NP_747055.1 CDS dbpA NC_002947.3 5641825 5643210 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 5641825..5643210 Pseudomonas putida KT2440 1043931 NP_747056.1 CDS PP_4953 NC_002947.3 5643333 5644514 D identified by match to TIGR protein family HMM TIGR00275; hypothetical protein 5643333..5644514 Pseudomonas putida KT2440 1041665 NP_747057.1 CDS PP_4954 NC_002947.3 5644643 5646826 D identified by match to TIGR protein family HMM TIGR01666; YccS/YhfK family integral membrane protein 5644643..5646826 Pseudomonas putida KT2440 1042425 NP_747058.1 CDS PP_4955 NC_002947.3 5646845 5647582 R identified by match to PFAM protein family HMM PF00497; hypothetical protein complement(5646845..5647582) Pseudomonas putida KT2440 1043889 NP_747059.1 CDS PP_4956 NC_002947.3 5647736 5648188 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 5647736..5648188 Pseudomonas putida KT2440 1041955 NP_747060.1 CDS PP_4957 NC_002947.3 5648212 5648508 R hypothetical protein complement(5648212..5648508) Pseudomonas putida KT2440 1041722 NP_747061.1 CDS PP_4958 NC_002947.3 5648521 5649060 R identified by match to PFAM protein family HMM PF01863; hypothetical protein complement(5648521..5649060) Pseudomonas putida KT2440 1044074 NP_747062.1 CDS PP_4959 NC_002947.3 5649061 5651187 R similar to SP:P21979; identified by sequence similarity; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) complement(5649061..5651187) Pseudomonas putida KT2440 1042674 NP_747063.1 CDS fda NC_002947.3 5651400 5652464 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(5651400..5652464) Pseudomonas putida KT2440 1041723 NP_747064.1 CDS PP_4961 NC_002947.3 5652565 5652894 R lipoprotein complement(5652565..5652894) Pseudomonas putida KT2440 1041991 NP_747065.1 CDS PP_4962 NC_002947.3 5653055 5653306 R similar to GP:6911261; identified by sequence similarity; hypothetical protein complement(5653055..5653306) Pseudomonas putida KT2440 1041822 NP_747066.1 CDS pgk NC_002947.3 5653306 5654469 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(5653306..5654469) Pseudomonas putida KT2440 1044025 NP_747067.1 CDS epd NC_002947.3 5654482 5655540 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; D-erythrose-4-phosphate dehydrogenase complement(5654482..5655540) Pseudomonas putida KT2440 1041821 NP_747068.1 CDS tktA NC_002947.3 5655692 5657689 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(5655692..5657689) Pseudomonas putida KT2440 1041814 NP_747069.1 CDS PP_4966 NC_002947.3 5657941 5658933 D identified by match to PFAM protein family HMM PF01022; ArsR family transcriptional regulator 5657941..5658933 Pseudomonas putida KT2440 1041704 NP_747070.1 CDS metK NC_002947.3 5658952 5660142 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 5658952..5660142 Pseudomonas putida KT2440 1042402 NP_747071.1 CDS ligB NC_002947.3 5660371 5662071 D this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 5660371..5662071 Pseudomonas putida KT2440 1041760 NP_747072.1 CDS PP_4969 NC_002947.3 5662204 5662596 D hypothetical protein 5662204..5662596 Pseudomonas putida KT2440 1044252 NP_747073.1 CDS PP_4970 NC_002947.3 5662671 5663138 R similar to GP:9946408, GB:M29893, SP:P11233, SP:P11234, PID:190850, and PID:35846; identified by sequence similarity; cytochrome c' complement(5662671..5663138) Pseudomonas putida KT2440 1044109 NP_747074.1 CDS PP_4971 NC_002947.3 5663222 5664400 D identified by match to PFAM protein family HMM PF03562; MltA domain-containing protein 5663222..5664400 Pseudomonas putida KT2440 1044609 NP_747075.1 CDS PP_4972 NC_002947.3 5664451 5664837 R identified by match to PFAM protein family HMM PF01124; hypothetical protein complement(5664451..5664837) Pseudomonas putida KT2440 1041628 NP_747076.1 CDS PP_4973 NC_002947.3 5664866 5665699 R identified by match to PFAM protein family HMM PF00892; hypothetical protein complement(5664866..5665699) Pseudomonas putida KT2440 1041824 NP_747077.1 CDS PP_4974 NC_002947.3 5665982 5667217 D identified by match to PFAM protein family HMM PF03596; sodium/hydrogen exchanger 5665982..5667217 Pseudomonas putida KT2440 1043904 NP_747078.1 CDS PP_4975 NC_002947.3 5667288 5667689 R identified by match to PFAM protein family HMM PF01662; thioesterase complement(5667288..5667689) Pseudomonas putida KT2440 1042725 NP_747079.1 CDS metF NC_002947.3 5669518 5670405 D similar to SP:O54235; identified by sequence similarity; 5,10-methylenetetrahydrofolate reductase 5669518..5670405 Pseudomonas putida KT2440 1042490 NP_747080.1 CDS PP_4978 NC_002947.3 5670490 5671575 D hypothetical protein 5670490..5671575 Pseudomonas putida KT2440 1043669 NP_747081.1 CDS PP_4979 NC_002947.3 5671745 5672533 D identified by match to PFAM protein family HMM PF00497; hypothetical protein 5671745..5672533 Pseudomonas putida KT2440 1042493 NP_747082.1 CDS PP_4980 NC_002947.3 5672752 5674632 D identified by match to TIGR protein family HMM TIGR01587; DEAD/DEAH box helicase 5672752..5674632 Pseudomonas putida KT2440 1041894 NP_747083.1 CDS PP_4981 NC_002947.3 5674770 5675384 R identified by match to PFAM protein family HMM PF04264; hypothetical protein complement(5674770..5675384) Pseudomonas putida KT2440 1043313 NP_747084.1 CDS PP_4982 NC_002947.3 5675381 5675932 R identified by match to PFAM protein family HMM PF01292; cytochrome B561 complement(5675381..5675932) Pseudomonas putida KT2440 1042479 NP_747085.1 CDS PP_4983 NC_002947.3 5676137 5677996 R identified by match to PFAM protein family HMM PF01593; amine oxidase complement(5676137..5677996) Pseudomonas putida KT2440 1042511 NP_747086.1 CDS bioA NC_002947.3 5678367 5679773 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 5678367..5679773 Pseudomonas putida KT2440 1043908 NP_747087.1 CDS PP_4985 NC_002947.3 5679937 5680656 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5679937..5680656 Pseudomonas putida KT2440 1043372 NP_747088.1 CDS PP_4986 NC_002947.3 5680657 5681274 R similar to GB:M27339, and PID:540472; identified by sequence similarity; hemolysin III family channel protein complement(5680657..5681274) Pseudomonas putida KT2440 1041617 NP_747089.1 CDS PP_4987 NC_002947.3 5681477 5681950 R chemotaxis protein CheW complement(5681477..5681950) Pseudomonas putida KT2440 1042298 NP_747090.1 CDS PP_4988 NC_002947.3 5681943 5686883 R identified by match to TIGR protein family HMM TIGR01387; chemotaxis protein CheA complement(5681943..5686883) Pseudomonas putida KT2440 1042467 NP_747091.1 CDS pilJ NC_002947.3 5686896 5688956 R similar to GB:Z15114, SP:P05129, PID:35497, GB:Z15114, SP:P05129, and PID:35497; identified by sequence similarity; methyl-accepting chemotaxis sensory transducer complement(5686896..5688956) Pseudomonas putida KT2440 1042444 NP_747092.1 CDS pilI NC_002947.3 5688968 5689522 R identified by match to PFAM protein family HMM PF01584; type IV pili signal transduction protein PilI complement(5688968..5689522) Pseudomonas putida KT2440 1041636 NP_747093.1 CDS pilH NC_002947.3 5689519 5689884 R similar to GB:M29877, SP:P04066, PID:1335066, PID:178409, PID:182779, PID:182788, and PID:182790; identified by sequence similarity; response regulator receiver protein complement(5689519..5689884) Pseudomonas putida KT2440 1042188 NP_747094.1 CDS pilG NC_002947.3 5689932 5690333 R similar to GB:X07898, SP:P02585, PID:1220372, PID:339736, PID:36729, GB:X07898, SP:P02585, PID:1220372, PID:339736, and PID:36729; identified by sequence similarity; response regulator receiver protein complement(5689932..5690333) Pseudomonas putida KT2440 1041886 NP_747095.1 CDS gshB NC_002947.3 5690572 5691525 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 5690572..5691525 Pseudomonas putida KT2440 1042200 NP_747096.1 CDS PP_4994 NC_002947.3 5691617 5692522 D identified by match to PFAM protein family HMM PF03544; TonB family protein 5691617..5692522 Pseudomonas putida KT2440 1042505 NP_747097.1 CDS algH NC_002947.3 5692692 5693261 D similar to GP:10442816, and GP:10442816; identified by sequence similarity; hypothetical protein 5692692..5693261 Pseudomonas putida KT2440 1046092 NP_747098.1 CDS PP_4996 NC_002947.3 5693261 5693686 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 5693261..5693686 Pseudomonas putida KT2440 1043208 NP_747099.1 CDS pyrR NC_002947.3 5693736 5694254 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 5693736..5694254 Pseudomonas putida KT2440 1042230 NP_747100.1 CDS pyrB NC_002947.3 5694267 5695271 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 5694267..5695271 Pseudomonas putida KT2440 1042990 NP_747101.1 CDS pyrC NC_002947.3 5695268 5696539 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 5695268..5696539 Pseudomonas putida KT2440 1046107 NP_747102.1 CDS hslV NC_002947.3 5696751 5697281 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5696751..5697281 Pseudomonas putida KT2440 1046116 NP_747103.1 CDS hslU NC_002947.3 5697358 5698701 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5697358..5698701 Pseudomonas putida KT2440 1043680 NP_747104.1 CDS PP_5002 NC_002947.3 5698868 5699245 D similar to GB:M96233, GB:M96234, GB:M99421, GB:M99422, GB:X68677, GB:X56837, SP:P09488, SP:Q03013, PID:306817, PID:306819, and PID:31937; identified by sequence similarity; hypothetical protein 5698868..5699245 Pseudomonas putida KT2440 1043912 NP_747105.1 CDS phaA NC_002947.3 5699514 5701193 D similar to GB:Z19054, SP:P35222, PID:38520, PID:860988, GB:Z19054, SP:P35222, PID:38520, and PID:860988; identified by sequence similarity; poly(3-hydroxyalkanoate) polymerase 1 5699514..5701193 Pseudomonas putida KT2440 1041855 NP_747106.1 CDS PP_5004 NC_002947.3 5701256 5702107 D similar to GB:M57763, SP:P26438, PID:178989, GB:M57763, SP:P26438, and PID:178989; identified by sequence similarity; poly(3-hydroxyalkanoate) depolymerase 5701256..5702107 Pseudomonas putida KT2440 1042474 NP_747107.1 CDS phaC NC_002947.3 5702157 5703839 D similar to GB:X66975, GB:X60648, GB:X65371, GB:X62006, GB:X65372, SP:P26599, PID:32354, PID:35770, PID:35772, GB:X66975, GB:X60648, GB:X65371, GB:X62006, GB:X65372, SP:P26599, PID:32354, PID:35770, and PID:35772; identified by sequence similarity; poly(3-hydroxyalkanoate) polymerase 2 5702157..5703839 Pseudomonas putida KT2440 1041897 NP_747108.1 CDS PP_5006 NC_002947.3 5703852 5704466 D similar to GP:4104926, and GP:4062971; identified by sequence similarity; TetR family transcriptional regulator 5703852..5704466 Pseudomonas putida KT2440 1042945 NP_747109.1 CDS PP_5007 NC_002947.3 5704578 5705363 R similar to GP:4104925, and GP:4104925; identified by sequence similarity; poly(hydroxyalkanoate) granule-associated protein complement(5704578..5705363) Pseudomonas putida KT2440 1044159 NP_747110.1 CDS PP_5008 NC_002947.3 5705374 5705793 R similar to GP:3955016, and GP:4104924; identified by sequence similarity; poly(hydroxyalkanoate) granule-associated protein complement(5705374..5705793) Pseudomonas putida KT2440 1043662 NP_747111.1 CDS PP_5009 NC_002947.3 5705974 5710734 D hypothetical protein 5705974..5710734 Pseudomonas putida KT2440 1042953 NP_747112.1 CDS PP_5010 NC_002947.3 5710753 5711088 R similar to GP:3955015, and GP:3955015; identified by sequence similarity; hypothetical protein complement(5710753..5711088) Pseudomonas putida KT2440 1044659 NP_747113.1 CDS ubiE NC_002947.3 5711153 5711923 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 5711153..5711923 Pseudomonas putida KT2440 1044728 NP_747114.1 CDS PP_5012 NC_002947.3 5711923 5712546 D hypothetical protein 5711923..5712546 Pseudomonas putida KT2440 1044472 NP_747115.1 CDS hisI NC_002947.3 5714237 5714629 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 5714237..5714629 Pseudomonas putida KT2440 1042612 NP_747116.1 CDS hisE NC_002947.3 5714631 5714966 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 5714631..5714966 Pseudomonas putida KT2440 1041782 NP_747117.1 CDS tatA NC_002947.3 5715049 5715321 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA 5715049..5715321 Pseudomonas putida KT2440 1042998 NP_747118.1 CDS tatB NC_002947.3 5715325 5715702 D Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase 5715325..5715702 Pseudomonas putida KT2440 1042951 NP_747119.1 CDS tatC-2 NC_002947.3 5715699 5716487 D identified by match to PFAM protein family HMM PF00902; Sec-independent protein translocase subunit TatC 5715699..5716487 Pseudomonas putida KT2440 1042473 NP_747120.1 CDS PP_5019 NC_002947.3 5716484 5717191 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5716484..5717191 Pseudomonas putida KT2440 1045175 NP_747121.1 CDS PP_5020 NC_002947.3 5717293 5719209 D identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 5717293..5719209 Pseudomonas putida KT2440 1042670 NP_747122.1 CDS PP_5021 NC_002947.3 5719467 5721410 D identified by match to PFAM protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 5719467..5721410 Pseudomonas putida KT2440 1045912 NP_747123.1 CDS PP_5022 NC_002947.3 5721520 5722254 R identified by match to PFAM protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(5721520..5722254) Pseudomonas putida KT2440 1045246 NP_747124.1 CDS PP_5023 NC_002947.3 5722247 5723209 R identified by match to TIGR protein family HMM TIGR01726; polar amino acid ABC transporter inner membrane subunit complement(5722247..5723209) Pseudomonas putida KT2440 1045237 NP_747125.1 CDS PP_5024 NC_002947.3 5723289 5724089 R identified by match to PFAM protein family HMM PF00497; amino acid ABC transporter substrate-binding protein complement(5723289..5724089) Pseudomonas putida KT2440 1043376 NP_747126.1 CDS mdoH NC_002947.3 5724383 5726956 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(5724383..5726956) Pseudomonas putida KT2440 1044479 NP_747127.1 CDS mdoG NC_002947.3 5726949 5728628 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(5726949..5728628) Pseudomonas putida KT2440 1043405 NP_747128.1 CDS dtD NC_002947.3 5728952 5729389 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(5728952..5729389) Pseudomonas putida KT2440 1042703 NP_747129.1 CDS pip NC_002947.3 5729386 5730357 R similar to GB:X62583, and PID:42775; identified by sequence similarity; proline iminopeptidase complement(5729386..5730357) Pseudomonas putida KT2440 1045446 NP_747130.1 CDS hutG NC_002947.3 5730527 5731330 R similar to GP:2642341, and GP:2642341; identified by sequence similarity; N-formylglutamate amidohydrolase complement(5730527..5731330) Pseudomonas putida KT2440 1046082 NP_747131.1 CDS hutI NC_002947.3 5731341 5732546 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(5731341..5732546) Pseudomonas putida KT2440 1044498 NP_747132.1 CDS PP_5031 NC_002947.3 5732562 5733965 R similar to GP:2642339; identified by sequence similarity; amino acid ABC transporter permease complement(5732562..5733965) Pseudomonas putida KT2440 1044217 NP_747133.1 CDS hutH NC_002947.3 5734122 5735654 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(5734122..5735654) Pseudomonas putida KT2440 1042841 NP_747134.1 CDS hutU NC_002947.3 5735763 5737436 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(5735763..5737436) Pseudomonas putida KT2440 1042837 NP_747135.1 CDS PP_5034 NC_002947.3 5737638 5738210 R hypothetical protein complement(5737638..5738210) Pseudomonas putida KT2440 1043104 NP_747136.1 CDS hutC NC_002947.3 5738207 5738953 R similar to SP:P22773, GB:L11701, SP:P80108, SP:Q15127, and PID:388763; identified by sequence similarity; histidine utilization repressor complement(5738207..5738953) Pseudomonas putida KT2440 1043694 NP_747137.1 CDS PP_5036 NC_002947.3 5739062 5740426 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 5739062..5740426 Pseudomonas putida KT2440 1043676 NP_747138.1 CDS PP_5037 NC_002947.3 5740497 5741069 R outer membrane lipoprotein Blc complement(5740497..5741069) Pseudomonas putida KT2440 1043888 NP_747139.1 CDS PP_5038 NC_002947.3 5741066 5741320 R hypothetical protein complement(5741066..5741320) Pseudomonas putida KT2440 1041820 NP_747140.1 CDS PP_5039 NC_002947.3 5741548 5742144 R hypothetical protein complement(5741548..5742144) Pseudomonas putida KT2440 1041600 NP_747141.1 CDS fbp NC_002947.3 5742148 5743158 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(5742148..5743158) Pseudomonas putida KT2440 1043617 NP_747142.1 CDS glgP NC_002947.3 5743405 5745855 R similar to GB:L08237, and PID:950411; identified by sequence similarity; glycogen/starch/alpha-glucan phosphorylase complement(5743405..5745855) Pseudomonas putida KT2440 1044574 NP_747143.1 CDS PP_5042 NC_002947.3 5745947 5746444 D similar to GP:9951085, and GP:9951085; identified by sequence similarity; hypothetical protein 5745947..5746444 Pseudomonas putida KT2440 1045987 NP_747144.1 CDS PP_5043 NC_002947.3 5746543 5748003 R similar to GP:6118365; identified by sequence similarity; hypothetical protein complement(5746543..5748003) Pseudomonas putida KT2440 1042349 NP_747145.1 CDS PP_5044 NC_002947.3 5748150 5749970 R identified by match to TIGR protein family HMM TIGR01394; GTP-binding protein TypA complement(5748150..5749970) Pseudomonas putida KT2440 1041914 NP_747146.1 CDS thiI NC_002947.3 5750099 5751553 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(5750099..5751553) Pseudomonas putida KT2440 1041702 NP_747147.1 CDS glnA NC_002947.3 5752024 5753430 D similar to SP:P06711; identified by sequence similarity; glutamine synthetase, type I 5752024..5753430 Pseudomonas putida KT2440 1044366 NP_747148.1 CDS ntrB NC_002947.3 5753796 5754881 D identified by match to PFAM protein family HMM PF02518; signal transduction histidine kinase, nitrogen specific, NtrB 5753796..5754881 Pseudomonas putida KT2440 1043403 NP_747149.1 CDS ntrC NC_002947.3 5754878 5756314 D similar to GP:9951423; identified by sequence similarity; Fis family transcriptional regulator 5754878..5756314 Pseudomonas putida KT2440 1043594 NP_747150.1 CDS PP_5049 NC_002947.3 5756580 5756687 R hypothetical protein complement(5756580..5756687) Pseudomonas putida KT2440 1043406 NP_747151.1 CDS PP_5050 NC_002947.3 5757002 5757967 D similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase 5757002..5757967 Pseudomonas putida KT2440 1043400 NP_747152.1 CDS PP_5051 NC_002947.3 5758485 5758922 R similar to GP:9951425, and GP:9951425; identified by sequence similarity; hypothetical protein complement(5758485..5758922) Pseudomonas putida KT2440 1042794 NP_747153.1 CDS PP_5052 NC_002947.3 5758909 5759382 D identified by match to TIGR protein family HMM TIGR00185; RNA methyltransferase 5758909..5759382 Pseudomonas putida KT2440 1043616 NP_747154.1 CDS secB NC_002947.3 5759538 5760023 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(5759538..5760023) Pseudomonas putida KT2440 1042615 NP_747155.1 CDS PP_5054 NC_002947.3 5760063 5760317 R identified by match to PFAM protein family HMM PF00462; glutaredoxin 3 complement(5760063..5760317) Pseudomonas putida KT2440 1041766 NP_747156.1 CDS PP_5055 NC_002947.3 5760319 5760732 R similar to GP:9951429; identified by sequence similarity; rhodanese domain-containing protein complement(5760319..5760732) Pseudomonas putida KT2440 1042614 NP_747157.1 CDS pgm NC_002947.3 5760940 5762475 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5760940..5762475 Pseudomonas putida KT2440 1044042 NP_747158.1 CDS PP_5057 NC_002947.3 5762616 5763932 D identified by match to PFAM protein family HMM PF01551; M24/M37 family peptidase 5762616..5763932 Pseudomonas putida KT2440 1043401 NP_747159.1 CDS PP_5058 NC_002947.3 5764011 5765327 D identified by match to PFAM protein family HMM PF03572; carboxyl-terminal protease 5764011..5765327 Pseudomonas putida KT2440 1041641 NP_747160.1 CDS PP_5059 NC_002947.3 5765336 5766103 D hypothetical protein 5765336..5766103 Pseudomonas putida KT2440 1041803 NP_747161.1 CDS PP_5060 NC_002947.3 5766147 5770862 R hypothetical protein complement(5766147..5770862) Pseudomonas putida KT2440 1043404 NP_747162.1 CDS PP_5061 NC_002947.3 5770950 5772953 R identified by match to PFAM protein family HMM PF04173; choline/carnitine/betaine transporter complement(5770950..5772953) Pseudomonas putida KT2440 1044579 NP_747163.1 CDS PP_5062 NC_002947.3 5773330 5773875 R hypothetical protein complement(5773330..5773875) Pseudomonas putida KT2440 1041597 NP_747164.1 CDS betB NC_002947.3 5774125 5775597 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 5774125..5775597 Pseudomonas putida KT2440 1041862 NP_747165.1 CDS betA NC_002947.3 5775675 5777372 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 5775675..5777372 Pseudomonas putida KT2440 1043008 NP_747166.1 CDS PP_5065 NC_002947.3 5777415 5779565 R hypothetical protein complement(5777415..5779565) Pseudomonas putida KT2440 1041774 NP_747167.2 CDS PP_5066 NC_002947.3 5779739 5781481 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 5779739..5781481 Pseudomonas putida KT2440 1041783 NP_747168.1 CDS PP_5067 NC_002947.3 5781517 5784825 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 5781517..5784825 Pseudomonas putida KT2440 1044653 NP_747169.1 CDS PP_5068 NC_002947.3 5784826 5786448 D identified by match to PFAM protein family HMM PF02696; hypothetical protein 5784826..5786448 Pseudomonas putida KT2440 1042616 NP_747170.1 CDS trxC NC_002947.3 5786579 5787013 D similar to GB:K01383, SP:P02795, SP:P04731, SP:P04732, SP:P04733, SP:P07438, SP:P13640, SP:P25713, SP:P80294, SP:P80295, SP:P80296, SP:P80297, PID:386864, PID:517349, PID:517351, and PID:914851; identified by sequence similarity; thioredoxin 5786579..5787013 Pseudomonas putida KT2440 1042006 NP_747171.1 CDS PP_5070 NC_002947.3 5787010 5787783 R identified by match to PFAM protein family HMM PF00991; ParA family protein complement(5787010..5787783) Pseudomonas putida KT2440 1041779 NP_747172.1 CDS PP_5071 NC_002947.3 5787860 5788759 R similar to GP:9951318, and GP:9951318; identified by sequence similarity; LysR family transcriptional regulator complement(5787860..5788759) Pseudomonas putida KT2440 1041805 NP_747173.1 CDS PP_5072 NC_002947.3 5788835 5790112 D identified by match to TIGR protein family HMM TIGR00880; major facilitator family transporter 5788835..5790112 Pseudomonas putida KT2440 1041661 NP_747174.1 CDS PP_5073 NC_002947.3 5790180 5790587 R identified by match to PFAM protein family HMM PF04076; hypothetical protein complement(5790180..5790587) Pseudomonas putida KT2440 1042949 NP_747175.1 CDS hemE NC_002947.3 5790644 5791708 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(5790644..5791708) Pseudomonas putida KT2440 1041992 NP_747176.1 CDS gltD NC_002947.3 5791903 5793321 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(5791903..5793321) Pseudomonas putida KT2440 1041787 NP_747177.1 CDS gltB NC_002947.3 5793445 5797890 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(5793445..5797890) Pseudomonas putida KT2440 1045099 NP_747178.1 CDS PP_5077 NC_002947.3 5798264 5799853 R similar to GP:9951327, and GP:9951327; identified by sequence similarity; sporulation domain-containing protein complement(5798264..5799853) Pseudomonas putida KT2440 1042934 NP_747179.1 CDS aroB NC_002947.3 5799869 5800966 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(5799869..5800966) Pseudomonas putida KT2440 1045947 NP_747180.1 CDS aroK NC_002947.3 5801063 5801581 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(5801063..5801581) Pseudomonas putida KT2440 1043097 NP_747181.1 CDS pilQ NC_002947.3 5801586 5802848 R similar to GP:9951330; identified by sequence similarity; type IV pilus secretin PilQ complement(5801586..5802848) Pseudomonas putida KT2440 1041901 NP_747182.1 CDS PP_5081 NC_002947.3 5802772 5803788 R In P. aeruginosa the cluster is pilQ-P-O-N-M. The C-terminal half of P. aeruginosa PilO has 24 % identity to the N-terminus of this protein and the 79 aa C- terminus of P. aeruginosa PilP has 37 % identity to the C-terminus of this protein.; similar to GB:M86752, SP:P31948, and PID:184565; identified by sequence similarity; type IV pili biogenesis protein complement(5802772..5803788) Pseudomonas putida KT2440 1041776 NP_747183.1 CDS pilN NC_002947.3 5803785 5804321 R fimbrial assembly family protein complement(5803785..5804321) Pseudomonas putida KT2440 1041801 NP_747184.1 CDS PP_5083 NC_002947.3 5804318 5805199 R similar to GP:895925, GB:D90040, GB:U23052, GB:U23434, GB:D10870, GB:D10871, GB:D10872, GB:U53473, SP:P11245, PID:1297332, PID:219412, PID:219416, PID:219872, PID:219875, PID:219878, PID:28228, PID:727413, and PID:727457; identified by sequence similarity; type IV pili biogenesis protein PilM complement(5804318..5805199) Pseudomonas putida KT2440 1042010 NP_747185.1 CDS PP_5084 NC_002947.3 5805403 5807856 D similar to GP:1763284, and SP:P02918; identified by sequence similarity; penicillin-binding protein 5805403..5807856 Pseudomonas putida KT2440 1045110 NP_747186.1 CDS maeB NC_002947.3 5808011 5809279 R identified by match to PFAM protein family HMM PF00390; malic enzyme complement(5808011..5809279) Pseudomonas putida KT2440 1041799 NP_747187.1 CDS PP_5086 NC_002947.3 5809457 5810224 R identified by match to PFAM protein family HMM PF00565; nuclease complement(5809457..5810224) Pseudomonas putida KT2440 1043361 NP_747188.2 CDS rpmE NC_002947.3 5810281 5810496 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(5810281..5810496) Pseudomonas putida KT2440 1043893 NP_747189.1 CDS priA NC_002947.3 5810664 5812883 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 5810664..5812883 Pseudomonas putida KT2440 1043212 NP_747190.1 CDS argS NC_002947.3 5813071 5814807 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 5813071..5814807 Pseudomonas putida KT2440 1041719 NP_747191.1 CDS PP_5090 NC_002947.3 5814809 5815507 D sporulation domain-containing protein 5814809..5815507 Pseudomonas putida KT2440 1041997 NP_747192.1 CDS PP_5091 NC_002947.3 5815598 5816017 R hypothetical protein complement(5815598..5816017) Pseudomonas putida KT2440 1041866 NP_747193.1 CDS PP_5092 NC_002947.3 5816182 5816805 D identified by match to PFAM protein family HMM PF00877; NLP/P60 protein 5816182..5816805 Pseudomonas putida KT2440 1041784 NP_747194.1 CDS pilT NC_002947.3 5816934 5817944 R similar to GB:X52425, SP:P24394, and PID:33834; identified by sequence similarity; twitching motility protein complement(5816934..5817944) Pseudomonas putida KT2440 1042013 NP_747195.1 CDS PP_5094 NC_002947.3 5817998 5818684 D similar to GB:M13143, SP:P03952, and PID:190263; identified by sequence similarity; alanine racemase 5817998..5818684 Pseudomonas putida KT2440 1044694 NP_747196.1 CDS proC-2 NC_002947.3 5818723 5819541 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5818723..5819541 Pseudomonas putida KT2440 1042622 NP_747197.1 CDS PP_5096 NC_002947.3 5819552 5820142 D identified by match to PFAM protein family HMM PF04020; hypothetical protein 5819552..5820142 Pseudomonas putida KT2440 1043013 NP_747198.1 CDS metX NC_002947.3 5820242 5821381 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 5820242..5821381 Pseudomonas putida KT2440 1046100 NP_747199.1 CDS metW NC_002947.3 5821371 5822009 D similar to GP:13540422; identified by sequence similarity; methionine biosynthesis protein MetW 5821371..5822009 Pseudomonas putida KT2440 1042775 NP_747200.1 CDS PP_5099 NC_002947.3 5822032 5822466 D hypothetical protein 5822032..5822466 Pseudomonas putida KT2440 1045257 NP_747201.1 CDS PP_5100 NC_002947.3 5822463 5823059 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 5822463..5823059 Pseudomonas putida KT2440 1042681 NP_747202.1 CDS PP_5101 NC_002947.3 5823056 5824231 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5823056..5824231 Pseudomonas putida KT2440 1043153 NP_747203.1 CDS PP_5102 NC_002947.3 5824241 5824567 D hypothetical protein 5824241..5824567 Pseudomonas putida KT2440 1043925 NP_747204.1 CDS trmB NC_002947.3 5824741 5825463 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(5824741..5825463) Pseudomonas putida KT2440 1046074 NP_747205.1 CDS thiG NC_002947.3 5825473 5826285 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(5825473..5826285) Pseudomonas putida KT2440 1042149 NP_747206.1 CDS PP_5105 NC_002947.3 5826340 5826618 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(5826340..5826618) Pseudomonas putida KT2440 1042679 NP_747207.1 CDS PP_5106 NC_002947.3 5826643 5827014 R similar to GP:9946231; identified by sequence similarity; hypothetical protein complement(5826643..5827014) Pseudomonas putida KT2440 1041859 NP_747208.1 CDS mtgA NC_002947.3 5827079 5827789 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 5827079..5827789 Pseudomonas putida KT2440 1041810 NP_747209.1 CDS rpoH NC_002947.3 5827988 5828842 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(5827988..5828842) Pseudomonas putida KT2440 1042633 NP_747210.1 CDS ftsX NC_002947.3 5828954 5829979 R similar to GP:5821403; identified by sequence similarity; hypothetical protein complement(5828954..5829979) Pseudomonas putida KT2440 1042632 NP_747211.1 CDS ftsE NC_002947.3 5829976 5830653 R similar to GB:K03474, GB:A18521, SP:P03971, PID:386953, and PID:512453; identified by sequence similarity; cell division ATP-binding protein FtsE complement(5829976..5830653) Pseudomonas putida KT2440 1042022 NP_747212.1 CDS ftsY NC_002947.3 5830650 5832134 R similar to GP:9946225, GB:M95585, GB:X68985, PID:184224, and PID:402776; identified by sequence similarity; signal recognition particle-docking protein FtsY complement(5830650..5832134) Pseudomonas putida KT2440 1042021 NP_747213.1 CDS PP_5112 NC_002947.3 5832366 5833721 D similar to GP:9946224; identified by sequence similarity; peptidase M16 domain-containing protein 5832366..5833721 Pseudomonas putida KT2440 1041700 NP_747214.1 CDS PP_5113 NC_002947.3 5833714 5835204 D identified by match to PFAM protein family HMM PF00675; peptidase M16 domain-containing protein 5833714..5835204 Pseudomonas putida KT2440 1041956 NP_747215.1 CDS PP_5114 NC_002947.3 5835204 5835806 D identified by match to PFAM protein family HMM PF03602; hypothetical protein 5835204..5835806 Pseudomonas putida KT2440 1046033 NP_747216.1 CDS PP_5115 NC_002947.3 5835897 5837198 D similar to GP:9946224; identified by sequence similarity; peptidase M16 domain-containing protein 5835897..5837198 Pseudomonas putida KT2440 1042116 NP_747217.1 CDS PP_5116 NC_002947.3 5837191 5838561 D identified by match to PFAM protein family HMM PF00675; peptidase M16 domain-containing protein 5837191..5838561 Pseudomonas putida KT2440 1041697 NP_747218.1 CDS PP_5117 NC_002947.3 5838622 5839614 D identified by match to TIGR protein family HMM TIGR01250; alpha/beta hydrolase 5838622..5839614 Pseudomonas putida KT2440 1041781 NP_747219.1 CDS PP_5118 NC_002947.3 5839717 5840571 R similar to SP:P97532; identified by sequence similarity; rhodanese domain-containing protein complement(5839717..5840571) Pseudomonas putida KT2440 1042662 NP_747220.1 CDS PP_5119 NC_002947.3 5840607 5841272 R similar to GP:9946218; identified by sequence similarity; TetR family transcriptional regulator complement(5840607..5841272) Pseudomonas putida KT2440 1041789 NP_747221.1 CDS PP_5120 NC_002947.3 5841423 5842853 D similar to GP:3336914; identified by sequence similarity; conifer aldehyde dehydrogenase 5841423..5842853 Pseudomonas putida KT2440 1041794 NP_747222.1 CDS PP_5121 NC_002947.3 5842864 5843349 D hypothetical protein 5842864..5843349 Pseudomonas putida KT2440 1041842 NP_747223.1 CDS PP_5122 NC_002947.3 5843370 5844968 D similar to GP:9946215; identified by sequence similarity; GMC family oxidoreductase 5843370..5844968 Pseudomonas putida KT2440 1041694 NP_747224.1 CDS coaD NC_002947.3 5845081 5845566 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 5845081..5845566 Pseudomonas putida KT2440 1042055 NP_747225.1 CDS PP_5124 NC_002947.3 5845668 5845919 D similar to SP:P00208; identified by sequence similarity; ferredoxin, 4Fe-4S 5845668..5845919 Pseudomonas putida KT2440 1042631 NP_747226.1 CDS mutM NC_002947.3 5846010 5846822 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(5846010..5846822) Pseudomonas putida KT2440 1042634 NP_747227.1 CDS PP_5126 NC_002947.3 5846826 5847596 R similar to GP:9946206, and GP:9946206; identified by sequence similarity; signal transduction protein complement(5846826..5847596) Pseudomonas putida KT2440 1041695 NP_747228.1 CDS PP_5127 NC_002947.3 5847820 5849016 D identified by match to PFAM protein family HMM PF03602; hypothetical protein 5847820..5849016 Pseudomonas putida KT2440 1041912 NP_747229.1 CDS ilvD NC_002947.3 5849287 5851128 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 5849287..5851128 Pseudomonas putida KT2440 1046050 NP_747230.1 CDS PP_5129 NC_002947.3 5851196 5852284 R identified by match to PFAM protein family HMM PF01661; hypothetical protein complement(5851196..5852284) Pseudomonas putida KT2440 1042606 NP_747231.1 CDS PP_5130 NC_002947.3 5852672 5853727 R similar to GP:9951606; identified by sequence similarity; hypothetical protein complement(5852672..5853727) Pseudomonas putida KT2440 1041785 NP_747232.1 CDS PP_5131 NC_002947.3 5853972 5855363 D similar to SP:P31586, PID:42189, SP:P31586, and PID:42189; identified by sequence similarity; sodium:dicarboxylate symporter 5853972..5855363 Pseudomonas putida KT2440 1042595 NP_747233.1 CDS folA NC_002947.3 5855495 5856010 R identified by match to PFAM protein family HMM PF00186; dihydrofolate reductase complement(5855495..5856010) Pseudomonas putida KT2440 1043319 NP_747234.1 CDS PP_5133 NC_002947.3 5856065 5857456 D hypothetical protein 5856065..5857456 Pseudomonas putida KT2440 1041652 NP_747235.1 CDS PP_5134 NC_002947.3 5857443 5858813 D identified by match to TIGR protein family HMM TIGR00650; hypothetical protein 5857443..5858813 Pseudomonas putida KT2440 1042601 NP_747236.1 CDS PP_5135 NC_002947.3 5858951 5859976 R identified by match to PFAM protein family HMM PF01547; ABC transporter substrate-binding protein complement(5858951..5859976) Pseudomonas putida KT2440 1041647 NP_747237.1 CDS PP_5136 NC_002947.3 5859995 5861719 R identified by match to TIGR protein family HMM TIGR01581; ABC transporter permease complement(5859995..5861719) Pseudomonas putida KT2440 1041684 NP_747238.1 CDS PP_5137 NC_002947.3 5861721 5862779 R identified by match to TIGR protein family HMM TIGR00955; ABC transporter ATP-binding protein complement(5861721..5862779) Pseudomonas putida KT2440 1041650 NP_747239.1 CDS PP_5138 NC_002947.3 5863010 5863879 R similar to GP:7579043; identified by sequence similarity; LysR family transcriptional regulator complement(5863010..5863879) Pseudomonas putida KT2440 1042547 NP_747240.1 CDS cadA-2 NC_002947.3 5863889 5866141 R similar to GP:9949854, GB:L14542, SP:Q07444, and PID:292361; identified by sequence similarity; heavy metal translocating P-type ATPase complement(5863889..5866141) Pseudomonas putida KT2440 1041793 NP_747241.1 CDS PP_5140 NC_002947.3 5866225 5866668 D identified by match to PFAM protein family HMM PF00376; MerR family transcriptional regulator 5866225..5866668 Pseudomonas putida KT2440 1041693 NP_747242.1 CDS thyA NC_002947.3 5866725 5867696 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(5866725..5867696) Pseudomonas putida KT2440 1042582 NP_747243.1 CDS lgt NC_002947.3 5867748 5868554 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(5867748..5868554) Pseudomonas putida KT2440 1042598 NP_747244.1 CDS PP_5143 NC_002947.3 5868571 5869353 R similar to GP:9946189; identified by sequence similarity; hypothetical protein complement(5868571..5869353) Pseudomonas putida KT2440 1042596 NP_747245.1 CDS PP_5144 NC_002947.3 5869484 5870230 D similar to GP:9946187; identified by sequence similarity; hypothetical protein 5869484..5870230 Pseudomonas putida KT2440 1042588 NP_747246.1 CDS ptsP NC_002947.3 5870364 5872643 R similar to GP:3641832; identified by sequence similarity; protein PtsP complement(5870364..5872643) Pseudomonas putida KT2440 1042581 NP_747247.1 CDS PP_5146 NC_002947.3 5872666 5873145 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(5872666..5873145) Pseudomonas putida KT2440 1042602 NP_747248.1 CDS PP_5147 NC_002947.3 5873287 5873943 D similar to GP:9946183; identified by sequence similarity; HAD superfamily hydrolase 5873287..5873943 Pseudomonas putida KT2440 1042578 NP_747249.1 CDS PP_5148 NC_002947.3 5874074 5874499 R hypothetical protein complement(5874074..5874499) Pseudomonas putida KT2440 1041648 NP_747250.1 CDS ilvA-2 NC_002947.3 5874647 5876161 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(5874647..5876161) Pseudomonas putida KT2440 1041646 NP_747251.1 CDS rpiA NC_002947.3 5876295 5876969 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 5876295..5876969 Pseudomonas putida KT2440 1042566 NP_747252.1 CDS PP_5151 NC_002947.3 5877074 5877976 R similar to GP:9948021; identified by sequence similarity; SdiA-regulated domain-containing protein complement(5877074..5877976) Pseudomonas putida KT2440 1042573 NP_747253.1 CDS PP_5152 NC_002947.3 5878067 5878987 R identified by match to PFAM protein family HMM PF01436; SdiA-regulated domain-containing protein complement(5878067..5878987) Pseudomonas putida KT2440 1042561 NP_747254.1 CDS PP_5153 NC_002947.3 5879170 5879835 R identified by match to PFAM protein family HMM PF01557; fumarylacetoacetate (FAA) hydrolase complement(5879170..5879835) Pseudomonas putida KT2440 1042574 NP_747255.1 CDS PP_5154 NC_002947.3 5879862 5881229 R identified by match to TIGR protein family HMM TIGR01679; FAD linked oxidase domain-containing protein complement(5879862..5881229) Pseudomonas putida KT2440 1042560 NP_747256.1 CDS serA NC_002947.3 5881431 5882660 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 5881431..5882660 Pseudomonas putida KT2440 1042568 NP_747257.1 CDS PP_5156 NC_002947.3 5882708 5883184 R hypothetical protein complement(5882708..5883184) Pseudomonas putida KT2440 1042579 NP_747258.1 CDS PP_5157 NC_002947.3 5883408 5883896 D identified by match to TIGR protein family HMM TIGR01096; hypothetical protein 5883408..5883896 Pseudomonas putida KT2440 1042583 NP_747259.1 CDS PP_5158 NC_002947.3 5884016 5884519 R similar to GP:9946158; identified by sequence similarity; hypothetical protein complement(5884016..5884519) Pseudomonas putida KT2440 1042592 NP_747260.1 CDS PP_5159 NC_002947.3 5884506 5885129 R similar to GP:9946156; identified by sequence similarity; 2OG-Fe(II) oxygenase complement(5884506..5885129) Pseudomonas putida KT2440 1042586 NP_747261.1 CDS PP_5160 NC_002947.3 5885252 5886004 D hypothetical protein 5885252..5886004 Pseudomonas putida KT2440 1042544 NP_747262.1 CDS PP_5161 NC_002947.3 5886005 5887006 R similar to GP:9946154; identified by sequence similarity; hypothetical protein complement(5886005..5887006) Pseudomonas putida KT2440 1042553 NP_747263.1 CDS PP_5162 NC_002947.3 5887136 5887705 D hypothetical protein 5887136..5887705 Pseudomonas putida KT2440 1042554 NP_747264.1 CDS PP_5163 NC_002947.3 5887684 5888250 R identified by match to TIGR protein family HMM TIGR01173; acetyltransferase complement(5887684..5888250) Pseudomonas putida KT2440 1042546 NP_747265.1 CDS PP_5164 NC_002947.3 5888337 5890703 D similar to SP:P15558; identified by sequence similarity; penicillin amidase 5888337..5890703 Pseudomonas putida KT2440 1042542 NP_747266.1 CDS PP_5165 NC_002947.3 5890823 5891608 R identified by match to TIGR protein family HMM TIGR00363; NLPA lipoprotein complement(5890823..5891608) Pseudomonas putida KT2440 1042564 NP_747267.1 CDS PP_5166 NC_002947.3 5891784 5892614 R identified by match to PFAM protein family HMM PF00158; Fis family transcriptional regulator complement(5891784..5892614) Pseudomonas putida KT2440 1043885 NP_747268.1 CDS PP_5167 NC_002947.3 5892679 5893260 R similar to GP:9946036; identified by sequence similarity; hypothetical protein complement(5892679..5893260) Pseudomonas putida KT2440 1042569 NP_747269.1 CDS cysA NC_002947.3 5893471 5894460 R identified by match to TIGR protein family HMM TIGR00972; sulfate ABC transporter ATPase complement(5893471..5894460) Pseudomonas putida KT2440 1042563 NP_747270.1 CDS cysW NC_002947.3 5894464 5895336 R similar to SP:P16702; identified by sequence similarity; sulfate ABC transporter permease complement(5894464..5895336) Pseudomonas putida KT2440 1042531 NP_747271.1 CDS cysT NC_002947.3 5895348 5896166 R similar to GB:X13585, GB:M22348, GB:M37387, SP:P14927, PID:190802, PID:190804, PID:190816, PID:37580, and PID:553631; identified by sequence similarity; sulfate ABC transporter permease complement(5895348..5896166) Pseudomonas putida KT2440 1042523 NP_747272.1 CDS cysP NC_002947.3 5896351 5897379 R identified by match to PFAM protein family HMM PF03697; sulfate ABC transporter substrate-binding protein complement(5896351..5897379) Pseudomonas putida KT2440 1042535 NP_747273.1 CDS PP_5172 NC_002947.3 5897409 5897591 R hypothetical protein complement(5897409..5897591) Pseudomonas putida KT2440 1042508 NP_747274.1 CDS PP_5173 NC_002947.3 5897825 5900878 R identified by match to PFAM protein family HMM PF03626; acriflavin resistance protein complement(5897825..5900878) Pseudomonas putida KT2440 1045100 NP_747275.1 CDS PP_5174 NC_002947.3 5900875 5901942 R identified by match to TIGR protein family HMM TIGR01730; RND efflux transporter complement(5900875..5901942) Pseudomonas putida KT2440 1042515 NP_747276.1 CDS PP_5175 NC_002947.3 5901939 5903027 R identified by match to TIGR protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(5901939..5903027) Pseudomonas putida KT2440 1042541 NP_747277.1 CDS PP_5176 NC_002947.3 5903181 5903735 D hypothetical protein 5903181..5903735 Pseudomonas putida KT2440 1041593 NP_747278.1 CDS potI NC_002947.3 5903842 5904735 R identified by match to PFAM protein family HMM PF04241; ornithine carbamoyltransferase complement(5903842..5904735) Pseudomonas putida KT2440 1042526 NP_747279.1 CDS potH NC_002947.3 5904732 5905652 R identified by match to TIGR protein family HMM TIGR01581; binding-protein-dependent transport system inner membrane protein complement(5904732..5905652) Pseudomonas putida KT2440 1042551 NP_747280.1 CDS potG NC_002947.3 5905649 5906791 R similar to SP:P31134; identified by sequence similarity; spermidine/putrescine ABC transporter ATPase complement(5905649..5906791) Pseudomonas putida KT2440 1042548 NP_747281.1 CDS potF-1 NC_002947.3 5906863 5907957 R similar to GP:13194613; identified by sequence similarity; spermidine/putrescine ABC transporter substrate-binding protein complement(5906863..5907957) Pseudomonas putida KT2440 1042497 NP_747282.1 CDS potF-2 NC_002947.3 5908114 5909211 R similar to GB:M81758, SP:P35499, PID:292487, PID:338213, and PID:908809; identified by sequence similarity; spermidine/putrescine ABC transporter substrate-binding protein complement(5908114..5909211) Pseudomonas putida KT2440 1042495 NP_747283.1 CDS PP_5182 NC_002947.3 5909380 5910741 R similar to SP:P32724, GB:X58406, PID:581361, PID:2094830, and GB:AL123456; identified by sequence similarity; aminotransferase complement(5909380..5910741) Pseudomonas putida KT2440 1042516 NP_747284.1 CDS PP_5183 NC_002947.3 5910790 5912148 R similar to SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase complement(5910790..5912148) Pseudomonas putida KT2440 1042525 NP_747285.1 CDS PP_5184 NC_002947.3 5912723 5914099 D similar to GP:9948046, SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase 5912723..5914099 Pseudomonas putida KT2440 1042504 NP_747286.1 CDS argA NC_002947.3 5914252 5915550 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(5914252..5915550) Pseudomonas putida KT2440 1042487 NP_747287.1 CDS argE NC_002947.3 5915675 5916817 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(5915675..5916817) Pseudomonas putida KT2440 1042518 NP_747288.1 CDS PP_5187 NC_002947.3 5916934 5918301 D similar to GP:9951516; identified by sequence similarity; adenylate cyclase 5916934..5918301 Pseudomonas putida KT2440 1042507 NP_747289.1 CDS PP_5188 NC_002947.3 5918396 5918866 R similar to GP:9948033, GB:J04173, SP:P18669, and PID:551174; identified by sequence similarity; transcriptional regulator BkdR complement(5918396..5918866) Pseudomonas putida KT2440 1042536 NP_747290.1 CDS PP_5189 NC_002947.3 5918993 5919298 D hypothetical protein 5918993..5919298 Pseudomonas putida KT2440 1042528 NP_747291.1 CDS PP_5190 NC_002947.3 5919406 5921079 D identified by match to PFAM protein family HMM PF00437; type II secretion system protein E 5919406..5921079 Pseudomonas putida KT2440 1042440 NP_747292.1 CDS PP_5191 NC_002947.3 5921168 5921482 D similar to GP:9951793; identified by sequence similarity; hypothetical protein 5921168..5921482 Pseudomonas putida KT2440 1042472 NP_747293.1 CDS gcvP-2 NC_002947.3 5921548 5924421 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(5921548..5924421) Pseudomonas putida KT2440 1042488 NP_747294.1 CDS gcvH NC_002947.3 5924618 5925001 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(5924618..5925001) Pseudomonas putida KT2440 1042445 NP_747295.1 CDS gcvT NC_002947.3 5925053 5926135 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(5925053..5926135) Pseudomonas putida KT2440 1042486 NP_747296.1 CDS PP_5195 NC_002947.3 5926263 5927885 R similar to GP:9951523; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein complement(5926263..5927885) Pseudomonas putida KT2440 1042430 NP_747297.1 CDS PP_5196 NC_002947.3 5928038 5929039 R similar to GB:D12621, GB:D12620, GB:S63604, SP:Q08477, PID:303603, and PID:391716; identified by sequence similarity; iron ABC transporter substrate-binding protein complement(5928038..5929039) Pseudomonas putida KT2440 1042469 NP_747298.1 CDS ubiF NC_002947.3 5929155 5930378 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(5929155..5930378) Pseudomonas putida KT2440 1042443 NP_747299.1 CDS PP_5198 NC_002947.3 5930382 5930864 R hypothetical protein complement(5930382..5930864) Pseudomonas putida KT2440 1043807 NP_747300.1 CDS ubiH NC_002947.3 5930861 5932060 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(5930861..5932060) Pseudomonas putida KT2440 1042475 NP_747301.1 CDS pepP NC_002947.3 5932057 5933391 R similar to SP:P15034; identified by sequence similarity; peptidase M24 complement(5932057..5933391) Pseudomonas putida KT2440 1042514 NP_747302.1 CDS PP_5201 NC_002947.3 5933413 5933967 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(5933413..5933967) Pseudomonas putida KT2440 1042432 NP_747303.1 CDS PP_5202 NC_002947.3 5934328 5934648 D hypothetical protein 5934328..5934648 Pseudomonas putida KT2440 1042437 NP_747304.1 CDS PP_5203 NC_002947.3 5934971 5935579 D identified by match to PFAM protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 5934971..5935579 Pseudomonas putida KT2440 1041613 NP_747305.1 CDS PP_5204 NC_002947.3 5935599 5935895 R hypothetical protein complement(5935599..5935895) Pseudomonas putida KT2440 1043355 NP_747306.1 CDS PP_5205 NC_002947.3 5935930 5936379 D hypothetical protein 5935930..5936379 Pseudomonas putida KT2440 1042457 NP_747307.1 CDS PP_5206 NC_002947.3 5936475 5937434 D similar to GP:9951540; identified by sequence similarity; secretion protein HlyD family protein 5936475..5937434 Pseudomonas putida KT2440 1042418 NP_747308.1 CDS PP_5207 NC_002947.3 5937431 5940151 D identified by match to PFAM protein family HMM PF03772; ABC transporter ATP-binding protein/permease 5937431..5940151 Pseudomonas putida KT2440 1042460 NP_747309.1 CDS PP_5208 NC_002947.3 5940153 5941265 D identified by match to TIGR protein family HMM TIGR01291; ABC transporter 5940153..5941265 Pseudomonas putida KT2440 1042412 NP_747310.1 CDS PP_5209 NC_002947.3 5942044 5942505 R similar to GP:9951542; identified by sequence similarity; flagellar basal body protein FliL complement(5942044..5942505) Pseudomonas putida KT2440 1042441 NP_747311.1 CDS PP_5210 NC_002947.3 5942606 5943583 D identified by match to TIGR protein family HMM TIGR01751; zinc-containing alcohol dehydrogenase 5942606..5943583 Pseudomonas putida KT2440 1042482 NP_747312.1 CDS PP_5211 NC_002947.3 5943668 5944225 R similar to GP:495778, and SP:P39163; identified by sequence similarity; ChaC family protein complement(5943668..5944225) Pseudomonas putida KT2440 1042419 NP_747313.1 CDS PP_5212 NC_002947.3 5944565 5945533 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(5944565..5945533) Pseudomonas putida KT2440 1042424 NP_747314.1 CDS PP_5213 NC_002947.3 5945533 5947185 R similar to GP:9951546; identified by sequence similarity; UbiD family decarboxylase complement(5945533..5947185) Pseudomonas putida KT2440 1042398 NP_747315.1 CDS rho NC_002947.3 5947205 5948464 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(5947205..5948464) Pseudomonas putida KT2440 1042415 NP_747316.1 CDS trx-2 NC_002947.3 5948692 5949021 R identified by match to TIGR protein family HMM TIGR00411; thioredoxin complement(5948692..5949021) Pseudomonas putida KT2440 1042429 NP_747317.1 CDS ppx NC_002947.3 5949275 5950777 D similar to GP:4760367, and SP:P29014; identified by sequence similarity; Ppx/GppA phosphatase 5949275..5950777 Pseudomonas putida KT2440 1042408 NP_747318.1 CDS ppk NC_002947.3 5950764 5952947 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(5950764..5952947) Pseudomonas putida KT2440 1042417 NP_747319.1 CDS PP_5218 NC_002947.3 5953221 5953865 D identified by match to PFAM protein family HMM PF04279; DedA family protein 5953221..5953865 Pseudomonas putida KT2440 1042404 NP_747320.1 CDS PP_5219 NC_002947.3 5953698 5954993 R identified by match to PFAM protein family HMM PF04116; hypothetical protein complement(5953698..5954993) Pseudomonas putida KT2440 1042434 NP_747321.1 CDS elbB NC_002947.3 5955100 5955765 D similar to SP:P26428; identified by sequence similarity; isoprenoid biosynthesis protein with amidotransferase-like domain 5955100..5955765 Pseudomonas putida KT2440 1041958 NP_747322.1 CDS PP_5221 NC_002947.3 5955969 5956457 R identified by match to PFAM protein family HMM PF02639; hypothetical protein complement(5955969..5956457) Pseudomonas putida KT2440 1042435 NP_747323.1 CDS cyaA NC_002947.3 5956588 5959443 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 5956588..5959443 Pseudomonas putida KT2440 1042392 NP_747324.1 CDS rnk NC_002947.3 5959513 5959923 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(5959513..5959923) Pseudomonas putida KT2440 1042387 NP_747325.1 CDS PP_5224 NC_002947.3 5960070 5960294 R similar to GP:9949921; identified by sequence similarity; hypothetical protein complement(5960070..5960294) Pseudomonas putida KT2440 1042389 NP_747326.1 CDS cyaY NC_002947.3 5960296 5960628 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(5960296..5960628) Pseudomonas putida KT2440 1042385 NP_747327.1 CDS PP_5226 NC_002947.3 5960868 5961086 D similar to GB:X57173, PID:40532, PID:2353072, PID:2353076, PID:2353080, PID:2353082, PID:2353084, PID:2353088, PID:2353090, PID:2353092, PID:2353096, PID:2353106, PID:2353116, PID:2353118, PID:2353122, GB:X57173, PID:40532, PID:2353072, PID:2353076, PID:2353080, PID:2353082, PID:2353084, PID:2353088, PID:2353090, PID:2353092, PID:2353096, PID:2353106, PID:2353116, PID:2353118, and PID:2353122; identified by sequence similarity; Lppl family lipoprotein 5960868..5961086 Pseudomonas putida KT2440 1042367 NP_747328.1 CDS lysA-2 NC_002947.3 5961096 5962343 D identified by match to PFAM protein family HMM PF00278; diaminopimelate decarboxylase 5961096..5962343 Pseudomonas putida KT2440 1042399 NP_747329.1 CDS dapF NC_002947.3 5962315 5963178 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 5962315..5963178 Pseudomonas putida KT2440 1042378 NP_747330.1 CDS PP_5229 NC_002947.3 5963192 5963902 D similar to GB:X70670, GB:U01097, PID:1150846, PID:403299, GB:X70670, GB:U01097, PID:1150846, and PID:403299; identified by sequence similarity; hypothetical protein 5963192..5963902 Pseudomonas putida KT2440 1042390 NP_747331.1 CDS xerC NC_002947.3 5963902 5964801 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 5963902..5964801 Pseudomonas putida KT2440 1042368 NP_747332.1 CDS PP_5231 NC_002947.3 5964798 5965493 D identified by match to TIGR protein family HMM TIGR01668; HAD superfamily hydrolase 5964798..5965493 Pseudomonas putida KT2440 1042363 NP_747333.1 CDS PP_5232 NC_002947.3 5965593 5965922 R similar to GP:9951599; identified by sequence similarity; hypothetical protein complement(5965593..5965922) Pseudomonas putida KT2440 1043840 NP_747334.1 CDS amtB NC_002947.3 5966352 5967683 R identified by match to PFAM protein family HMM PF00909; ammonium transporter complement(5966352..5967683) Pseudomonas putida KT2440 1042352 NP_747335.1 CDS PP_5234 NC_002947.3 5967730 5968068 R similar to GB:J03077, GB:J03015, GB:M86181, GB:M60255, GB:M60258, GB:X57107, GB:D00422, GB:M81355, GB:X57108, PID:1565257, PID:183231, PID:220064, PID:30235, PID:337756, PID:337760, PID:337762, PID:337765, and PID:337767; identified by sequence similarity; nitrogen regulatory protein P-II complement(5967730..5968068) Pseudomonas putida KT2440 1042380 NP_747336.1 CDS PP_5235 NC_002947.3 5968587 5968853 D similar to GP:9951603; identified by sequence similarity; hypothetical protein 5968587..5968853 Pseudomonas putida KT2440 1042346 NP_747337.1 CDS PP_5236 NC_002947.3 5969161 5971284 R identified by match to PFAM protein family HMM PF03745; Sel1 domain-containing protein repeat-containing protein complement(5969161..5971284) Pseudomonas putida KT2440 1042371 NP_747338.1 CDS PP_5237 NC_002947.3 5971493 5971633 D similar to SP:P57015; identified by sequence similarity; hypothetical protein 5971493..5971633 Pseudomonas putida KT2440 1042347 NP_747339.1 CDS PP_5238 NC_002947.3 5972205 5972693 D similar to GP:2708665; identified by sequence similarity; hypothetical protein 5972205..5972693 Pseudomonas putida KT2440 1042379 NP_747340.1 CDS PP_5239 NC_002947.3 5976191 5977681 D similar to GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, PID:747710, GB:M28880, GB:X16609, GB:X16609, SP:P16157, GB:S82671, PID:1845219, and PID:747710; identified by sequence similarity; magnesium chelatase subunit D/I family protein 5976191..5977681 Pseudomonas putida KT2440 1042376 NP_747341.1 CDS PP_5240 NC_002947.3 5977750 5978118 R similar to GP:2565293; identified by sequence similarity; response regulator complement(5977750..5978118) Pseudomonas putida KT2440 1042333 NP_747342.1 CDS PP_5241 NC_002947.3 5978115 5979107 R similar to GP:2598025; identified by sequence similarity; LuxR family transcriptional regulator complement(5978115..5979107) Pseudomonas putida KT2440 1042334 NP_747343.1 CDS PP_5242 NC_002947.3 5979347 5984395 D similar to GP:7271850; identified by sequence similarity; sensor histidine kinase/GAF domain-containing protein 5979347..5984395 Pseudomonas putida KT2440 1042342 NP_747344.1 CDS PP_5243 NC_002947.3 5984484 5985110 R similar to GP:9947129; identified by sequence similarity; isochorismatase superfamily hydrolase complement(5984484..5985110) Pseudomonas putida KT2440 1042340 NP_747345.1 CDS PP_5244 NC_002947.3 5985182 5985586 R identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator complement(5985182..5985586) Pseudomonas putida KT2440 1042356 NP_747346.1 CDS PP_5245 NC_002947.3 5985725 5986711 D similar to GP:4584493; identified by sequence similarity; AraC family transcriptional regulator 5985725..5986711 Pseudomonas putida KT2440 1042324 NP_747347.1 CDS kefB NC_002947.3 5986910 5988697 D similar to GP:9947134, GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; potassium efflux system protein 5986910..5988697 Pseudomonas putida KT2440 1042351 NP_747348.1 CDS PP_5247 NC_002947.3 5989281 5989679 D hypothetical protein 5989281..5989679 Pseudomonas putida KT2440 1042341 NP_747349.1 CDS PP_5248 NC_002947.3 5990028 5990657 R similar to GB:M17219, SP:P04898, SP:P04899, SP:P08754, and PID:386747; identified by sequence similarity; isochorismatase superfamily hydrolase complement(5990028..5990657) Pseudomonas putida KT2440 1042362 NP_747350.1 CDS PP_5249 NC_002947.3 5990886 5991797 D similar to GP:9948462; identified by sequence similarity; LysR family transcriptional regulator 5990886..5991797 Pseudomonas putida KT2440 1041663 NP_747351.1 CDS PP_5250 NC_002947.3 5992001 5993263 D identified by match to PFAM protein family HMM PF03573; porin 5992001..5993263 Pseudomonas putida KT2440 1044766 NP_747352.1 CDS PP_5251 NC_002947.3 5993265 5994863 D identified by match to PFAM protein family HMM PF04144; transporter 5993265..5994863 Pseudomonas putida KT2440 1042336 NP_747353.1 CDS PP_5252 NC_002947.3 5995040 5997022 R identified by match to TIGR protein family HMM TIGR01416; amidohydrolase complement(5995040..5997022) Pseudomonas putida KT2440 1042338 NP_747354.1 CDS PP_5253 NC_002947.3 5997222 5998040 R similar to SP:P22862, GB:U09075, PID:483882, PID:483886, PID:483892, PID:483898, PID:483902, PID:506423, PID:567134, PID:567136, PID:567138, PID:567154, PID:567158, PID:567168, PID:567172, PID:587330, PID:587332, PID:587334, PID:619613, PID:619614, PID:642378, PID:642582, PID:722458, PID:791028, PID:939916, and PID:939919; identified by sequence similarity; arylesterase complement(5997222..5998040) Pseudomonas putida KT2440 1042331 NP_747355.1 CDS PP_5254 NC_002947.3 5998081 5998419 R similar to GB:Z23013, SP:Q08815, and PID:396549; identified by sequence similarity; hypothetical protein complement(5998081..5998419) Pseudomonas putida KT2440 1042328 NP_747356.1 CDS PP_5255 NC_002947.3 5998507 5999136 R similar to GB:M17219, SP:P04898, SP:P04899, SP:P08754, and PID:386747; identified by sequence similarity; isochorismatase superfamily hydrolase complement(5998507..5999136) Pseudomonas putida KT2440 1042311 NP_747357.1 CDS PP_5256 NC_002947.3 5999457 6000884 D identified by match to PFAM protein family HMM PF00027; cyclic nucleotide-regulated small mechanosensitive ion channel 5999457..6000884 Pseudomonas putida KT2440 1042330 NP_747358.1 CDS PP_5257 NC_002947.3 6000993 6002279 R identified by match to TIGR protein family HMM TIGR00137; FAD dependent oxidoreductase complement(6000993..6002279) Pseudomonas putida KT2440 1042322 NP_747359.1 CDS PP_5258 NC_002947.3 6002437 6003927 R identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase complement(6002437..6003927) Pseudomonas putida KT2440 1042337 NP_747360.1 CDS PP_5259 NC_002947.3 6004063 6004953 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 6004063..6004953 Pseudomonas putida KT2440 1042339 NP_747361.1 CDS PP_5260 NC_002947.3 6005129 6006523 D similar to SP:Q04314, GB:X60777, PID:46933, SP:Q04314, GB:X60777, and PID:46933; identified by sequence similarity; hypothetical protein 6005129..6006523 Pseudomonas putida KT2440 1042329 NP_747362.1 CDS PP_5261 NC_002947.3 6006622 6007548 R similar to GP:9951608; identified by sequence similarity; LysR family transcriptional regulator complement(6006622..6007548) Pseudomonas putida KT2440 1042297 NP_747363.1 CDS PP_5262 NC_002947.3 6007706 6009094 D functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 6007706..6009094 Pseudomonas putida KT2440 1042301 NP_747364.1 CDS PP_5263 NC_002947.3 6009176 6010843 R identified by match to TIGR protein family HMM TIGR00254; diguanylate cyclase complement(6009176..6010843) Pseudomonas putida KT2440 1042305 NP_747365.1 CDS rep NC_002947.3 6011140 6013149 D identified by match to PFAM protein family HMM PF01443; ATP-dependent DNA helicase Rep 6011140..6013149 Pseudomonas putida KT2440 1042307 NP_747366.1 CDS xpt NC_002947.3 6013214 6013786 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 6013214..6013786 Pseudomonas putida KT2440 1045749 NP_747367.1 CDS PP_5266 NC_002947.3 6013896 6015689 R similar to SP:P38942; identified by sequence similarity; acetyl-CoA hydrolase/transferase complement(6013896..6015689) Pseudomonas putida KT2440 1042287 NP_747368.1 CDS PP_5267 NC_002947.3 6016902 6017267 R similar to GB:M33509, GB:M33512, GB:M33518, GB:Z15025, SP:P48634, PID:179339, and PID:179345; identified by sequence similarity; cytochrome c5 complement(6016902..6017267) Pseudomonas putida KT2440 1042300 NP_747369.1 CDS PP_5268 NC_002947.3 6017461 6018009 R identified by match to PFAM protein family HMM PF01381; Cro/CI family transcriptional regulator complement(6017461..6018009) Pseudomonas putida KT2440 1042303 NP_747370.1 CDS dadX NC_002947.3 6018117 6019190 R catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase complement(6018117..6019190) Pseudomonas putida KT2440 1041674 NP_747371.1 CDS dadA-2 NC_002947.3 6019335 6020639 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(6019335..6020639) Pseudomonas putida KT2440 1042325 NP_747372.1 CDS lrp NC_002947.3 6020796 6021284 D similar to GP:9951624; identified by sequence similarity; leucine-responsive regulatory protein 6020796..6021284 Pseudomonas putida KT2440 1042271 NP_747373.1 CDS PP_5272 NC_002947.3 6021287 6021640 R similar to GP:9949825, and GP:9949825; identified by sequence similarity; hypothetical protein complement(6021287..6021640) Pseudomonas putida KT2440 1042278 NP_747374.1 CDS PP_5273 NC_002947.3 6021784 6023076 D similar to GB:X65867, GB:S60710, SP:P30566, PID:28904, and PID:28905; identified by sequence similarity; oxidoreductase 6021784..6023076 Pseudomonas putida KT2440 1042289 NP_747375.1 CDS PP_5274 NC_002947.3 6023220 6023543 R hypothetical protein complement(6023220..6023543) Pseudomonas putida KT2440 1042282 NP_747376.1 CDS PP_5275 NC_002947.3 6023569 6025059 D identified by match to PFAM protein family HMM PF01276; GntR family transcriptional regulator 6023569..6025059 Pseudomonas putida KT2440 1042293 NP_747377.1 CDS PP_5276 NC_002947.3 6025120 6026673 D similar to SP:Q04222, and PID:141982; identified by sequence similarity; phospholipase D/transphosphatidylase 6025120..6026673 Pseudomonas putida KT2440 1045680 NP_747378.1 CDS PP_5277 NC_002947.3 6026708 6027847 R identified by match to PFAM protein family HMM PF04143; major facilitator family transporter complement(6026708..6027847) Pseudomonas putida KT2440 1042284 NP_747379.1 CDS PP_5278 NC_002947.3 6027958 6029451 R identified by match to TIGR protein family HMM TIGR01722; aldehyde dehydrogenase complement(6027958..6029451) Pseudomonas putida KT2440 1042265 NP_747380.1 CDS PP_5279 NC_002947.3 6029648 6030007 D hypothetical protein 6029648..6030007 Pseudomonas putida KT2440 1042288 NP_747381.1 CDS PP_5280 NC_002947.3 6029983 6030372 R hypothetical protein complement(6029983..6030372) Pseudomonas putida KT2440 1042263 NP_747382.1 CDS rpmG NC_002947.3 6030373 6030528 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(6030373..6030528) Pseudomonas putida KT2440 1045684 NP_747383.1 CDS rpmB NC_002947.3 6030540 6030776 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(6030540..6030776) Pseudomonas putida KT2440 1042258 NP_747384.1 CDS PP_5283 NC_002947.3 6031138 6032727 D identified by match to PFAM protein family HMM PF00496; peptide ABC transporter substrate-binding protein 6031138..6032727 Pseudomonas putida KT2440 1042261 NP_747385.1 CDS radC NC_002947.3 6032863 6033543 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(6032863..6033543) Pseudomonas putida KT2440 1045679 NP_747386.1 CDS coaBC NC_002947.3 6033669 6034880 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 6033669..6034880 Pseudomonas putida KT2440 1042242 NP_747387.1 CDS dut NC_002947.3 6034886 6035341 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 6034886..6035341 Pseudomonas putida KT2440 1042257 NP_747388.1 CDS PP_5287 NC_002947.3 6035323 6035463 R hypothetical protein complement(6035323..6035463) Pseudomonas putida KT2440 1042252 NP_747389.1 CDS PP_5288 NC_002947.3 6035462 6036853 D similar to GB:D13643, and PID:285997; identified by sequence similarity; phosphomannomutase 6035462..6036853 Pseudomonas putida KT2440 1042276 NP_747390.1 CDS argB NC_002947.3 6036884 6037789 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 6036884..6037789 Pseudomonas putida KT2440 1042259 NP_747391.1 CDS PP_5290 NC_002947.3 6038006 6038971 R similar to GP:7741879; identified by sequence similarity; ISPpu10, transposase complement(6038006..6038971) Pseudomonas putida KT2440 1042239 NP_747392.1 CDS pyrE NC_002947.3 6039265 6039906 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(6039265..6039906) Pseudomonas putida KT2440 1045331 NP_747393.1 CDS crc NC_002947.3 6039987 6040766 D similar to GP:1079662; identified by sequence similarity; exodeoxyribonuclease III 6039987..6040766 Pseudomonas putida KT2440 1042227 NP_747394.1 CDS PP_5293 NC_002947.3 6040800 6041168 R identified by match to PFAM protein family HMM PF03675; hypothetical protein complement(6040800..6041168) Pseudomonas putida KT2440 1042247 NP_747395.1 CDS rph NC_002947.3 6041192 6041914 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(6041192..6041914) Pseudomonas putida KT2440 1042255 NP_747396.2 CDS PP_5295 NC_002947.3 6042142 6043005 D identified by match to PFAM protein family HMM PF03755; hypothetical protein 6042142..6043005 Pseudomonas putida KT2440 1042222 NP_747397.1 CDS gmk NC_002947.3 6043019 6043639 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 6043019..6043639 Pseudomonas putida KT2440 1042249 NP_747398.1 CDS PP_5297 NC_002947.3 6043673 6045280 R identified by match to PFAM protein family HMM PF03806; amino acid ABC transporter permease complement(6043673..6045280) Pseudomonas putida KT2440 1042243 NP_747399.1 CDS PP_5298 NC_002947.3 6045334 6046101 R similar to SP:P76038; identified by sequence similarity; peptidase C26 complement(6045334..6046101) Pseudomonas putida KT2440 1042245 NP_747400.1 CDS PP_5299 NC_002947.3 6046106 6047488 R similar to GP:9948046, SP:P78061, SP:P78061, SP:P28787, GB:X68129, and PID:45902; identified by sequence similarity; glutamine synthetase complement(6046106..6047488) Pseudomonas putida KT2440 1042223 NP_747401.1 CDS PP_5300 NC_002947.3 6047517 6048566 D similar to GP:9948295; identified by sequence similarity; LysR family transcriptional regulator 6047517..6048566 Pseudomonas putida KT2440 1042183 NP_747402.1 CDS rpoZ NC_002947.3 6048807 6049070 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 6048807..6049070 Pseudomonas putida KT2440 1042214 NP_747403.1 CDS spoT NC_002947.3 6049130 6051238 D similar to GP:9951657; identified by sequence similarity; (p)ppGpp synthetase I SpoT/RelA 6049130..6051238 Pseudomonas putida KT2440 1042219 NP_747404.1 CDS PP_5303 NC_002947.3 6051262 6051642 D similar to SP:P52759; identified by sequence similarity; endoribonuclease 6051262..6051642 Pseudomonas putida KT2440 1042224 NP_747405.1 CDS PP_5304 NC_002947.3 6051699 6052430 D lipoprotein 6051699..6052430 Pseudomonas putida KT2440 1042202 NP_747406.1 CDS PP_5305 NC_002947.3 6052600 6053457 R identified by match to TIGR protein family HMM TIGR01746; NAD-dependent epimerase/dehydratase complement(6052600..6053457) Pseudomonas putida KT2440 1042210 NP_747407.1 CDS exbB NC_002947.3 6053648 6054610 D identified by match to PFAM protein family HMM PF01618; ferric siderophore transport system protein ExbB 6053648..6054610 Pseudomonas putida KT2440 1042208 NP_747408.1 CDS exbD NC_002947.3 6054614 6055042 D membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 6054614..6055042 Pseudomonas putida KT2440 1042225 NP_747409.1 CDS tonB NC_002947.3 6055039 6055770 D similar to GB:M17517, GB:Y00716, GB:Y00716, GB:X07523, GB:Z29665, GB:X07525, SP:P08603, PID:1335095, PID:1354770, PID:180473, PID:31965, PID:758073, GB:M17517, GB:Y00716, GB:Y00716, GB:X07523, GB:Z29665, GB:X07525, SP:P08603, PID:1335095, PID:1354770, PID:180473, PID:31965, and PID:758073; identified by sequence similarity; TonB family protein 6055039..6055770 Pseudomonas putida KT2440 1042220 NP_747410.1 CDS PP_5309 NC_002947.3 6055865 6056791 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 6055865..6056791 Pseudomonas putida KT2440 1042238 NP_747411.1 CDS recG NC_002947.3 6056795 6058873 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 6056795..6058873 Pseudomonas putida KT2440 1042195 NP_747412.1 CDS PP_5311 NC_002947.3 6058952 6060355 D identified by match to TIGR protein family HMM TIGR01737; signal transduction protein 6058952..6060355 Pseudomonas putida KT2440 1042196 NP_747413.1 CDS PP_5312 NC_002947.3 6060536 6060910 R hypothetical protein complement(6060536..6060910) Pseudomonas putida KT2440 1042193 NP_747414.1 CDS hupA NC_002947.3 6061059 6061358 R similar to GB:L05425, and PID:179285; identified by sequence similarity; histone family protein DNA-binding protein complement(6061059..6061358) Pseudomonas putida KT2440 1042194 NP_747415.1 CDS rubB NC_002947.3 6061546 6062694 R identified by match to TIGR protein family HMM TIGR01508; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(6061546..6062694) Pseudomonas putida KT2440 1042189 NP_747416.1 CDS rubA NC_002947.3 6062711 6062878 R identified by match to PFAM protein family HMM PF00301; rubredoxin-type Fe(Cys)4 protein complement(6062711..6062878) Pseudomonas putida KT2440 1042190 NP_747417.1 CDS PP_5316 NC_002947.3 6062911 6063021 D hypothetical protein 6062911..6063021 Pseudomonas putida KT2440 1042199 NP_747418.1 CDS PP_5317 NC_002947.3 6063103 6063660 D similar to GP:9885819; identified by sequence similarity; chorismate lyase 6063103..6063660 Pseudomonas putida KT2440 1042185 NP_747419.1 CDS ubiA NC_002947.3 6063660 6064550 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 6063660..6064550 Pseudomonas putida KT2440 1042212 NP_747420.1 CDS PP_5319 NC_002947.3 6064584 6065000 R identified by match to PFAM protein family HMM PF03640; hypothetical protein complement(6064584..6065000) Pseudomonas putida KT2440 1045693 NP_747421.1 CDS phoB NC_002947.3 6065091 6065819 D similar to GB:M23379, SP:P20936, PID:182972, PID:182974, PID:2294274, and PID:2294276; identified by sequence similarity; transcriptional regulator 6065091..6065819 Pseudomonas putida KT2440 1042206 NP_747422.1 CDS phoR NC_002947.3 6065868 6067175 D similar to GB:J05252, SP:P16519, PID:189131, and PID:189652; identified by sequence similarity; PAS/PAC sensor signal transduction histidine kinase 6065868..6067175 Pseudomonas putida KT2440 1042177 NP_747423.1 CDS PP_5322 NC_002947.3 6067349 6068689 D identified by match to PFAM protein family HMM PF03471; hypothetical protein 6067349..6068689 Pseudomonas putida KT2440 1042179 NP_747424.1 CDS PP_5323 NC_002947.3 6068702 6069598 R identified by match to PFAM protein family HMM PF01551; M24/M37 family peptidase complement(6068702..6069598) Pseudomonas putida KT2440 1042169 NP_747425.1 CDS PP_5324 NC_002947.3 6069745 6070635 R identified by match to PFAM protein family HMM PF00072; response regulator receiver protein complement(6069745..6070635) Pseudomonas putida KT2440 1042178 NP_747426.1 CDS phoU NC_002947.3 6070798 6071568 R similar to SP:Q9Z410, and SP:Q9Z410; identified by sequence similarity; phosphate transporter PhoU complement(6070798..6071568) Pseudomonas putida KT2440 1042168 NP_747427.1 CDS pstB NC_002947.3 6071670 6072515 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(6071670..6072515) Pseudomonas putida KT2440 1042041 NP_747428.1 CDS pstA NC_002947.3 6072576 6074246 R similar to GP:4519571, and GP:9951688; identified by sequence similarity; phosphate ABC transporter permease complement(6072576..6074246) Pseudomonas putida KT2440 1042175 NP_747429.1 CDS pstC NC_002947.3 6074264 6076273 R similar to GP:4519570, and GP:4519570; identified by sequence similarity; binding-protein-dependent transport system inner membrane protein complement(6074264..6076273) Pseudomonas putida KT2440 1042167 NP_747430.1 CDS pstS NC_002947.3 6076691 6077689 R similar to GP:4519569; identified by sequence similarity; phosphate ABC transporter substrate-binding protein complement(6076691..6077689) Pseudomonas putida KT2440 1042187 NP_747431.1 CDS PP_5330 NC_002947.3 6077927 6079216 R identified by match to PFAM protein family HMM PF04304; major facilitator family transporter complement(6077927..6079216) Pseudomonas putida KT2440 1042150 NP_747432.1 CDS PP_5331 NC_002947.3 6079578 6079976 D identified by match to PFAM protein family HMM PF01662; thioesterase 6079578..6079976 Pseudomonas putida KT2440 1042164 NP_747433.1 CDS PP_5332 NC_002947.3 6080048 6080944 D similar to GP:9951750, and GP:9951750; identified by sequence similarity; aldose 1-epimerase 6080048..6080944 Pseudomonas putida KT2440 1042133 NP_747434.1 CDS PP_5333 NC_002947.3 6081006 6081575 R hypothetical protein complement(6081006..6081575) Pseudomonas putida KT2440 1042154 NP_747435.1 CDS PP_5334 NC_002947.3 6081588 6081833 R identified by match to PFAM protein family HMM PF04226; transglycosylase-associated protein complement(6081588..6081833) Pseudomonas putida KT2440 1042172 NP_747436.1 CDS purK NC_002947.3 6081942 6083024 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(6081942..6083024) Pseudomonas putida KT2440 1042138 NP_747437.1 CDS purE NC_002947.3 6083035 6083526 R Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(6083035..6083526) Pseudomonas putida KT2440 1042159 NP_747438.1 CDS PP_5337 NC_002947.3 6083793 6084710 R similar to GP:9951756; identified by sequence similarity; LysR family transcriptional regulator complement(6083793..6084710) Pseudomonas putida KT2440 1042151 NP_747439.1 CDS aspA NC_002947.3 6084881 6086317 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 6084881..6086317 Pseudomonas putida KT2440 1041988 NP_747440.1 CDS PP_5339 NC_002947.3 6086469 6087539 D identified by match to PFAM protein family HMM PF00165; AraC family transcriptional regulator 6086469..6087539 Pseudomonas putida KT2440 1042158 NP_747441.1 CDS PP_5340 NC_002947.3 6087769 6088812 D similar to GB:X08058, GB:X08094, GB:X08095, GB:X08096, GB:X15480, GB:X06547, GB:M24485, GB:D28456, GB:U30897, GB:U62589, SP:P09211, PID:1575434, PID:2076717, PID:2204207, PID:31946, PID:31948, PID:579940, PID:598158, PID:726098, and PID:763405; identified by sequence similarity; histone deacetylase superfamily protein 6087769..6088812 Pseudomonas putida KT2440 1042594 NP_747442.1 CDS PP_5341 NC_002947.3 6088812 6089915 D identified by match to PFAM protein family HMM PF01547; polyamine ABC transporter substrate-binding protein 6088812..6089915 Pseudomonas putida KT2440 1042137 NP_747443.1 CDS PP_5342 NC_002947.3 6089947 6091476 R identified by match to TIGR protein family HMM TIGR01265; GntR family transcriptional regulator complement(6089947..6091476) Pseudomonas putida KT2440 1042140 NP_747444.1 CDS PP_5343 NC_002947.3 6091566 6092195 D identified by match to PFAM protein family HMM PF04299; FMN-binding negative transcriptional regulator 6091566..6092195 Pseudomonas putida KT2440 1042135 NP_747445.1 CDS PP_5344 NC_002947.3 6092207 6092653 D identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 6092207..6092653 Pseudomonas putida KT2440 1046193 NP_747446.1 CDS PP_5345 NC_002947.3 6092661 6093332 D identified by match to PFAM protein family HMM PF00583; acetyltransferase 6092661..6093332 Pseudomonas putida KT2440 1042121 NP_747447.1 CDS oadA NC_002947.3 6093452 6095260 R catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B complement(6093452..6095260) Pseudomonas putida KT2440 1042148 NP_747448.1 CDS accC-2 NC_002947.3 6095272 6096687 R biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A complement(6095272..6096687) Pseudomonas putida KT2440 1042115 NP_747449.1 CDS PP_5348 NC_002947.3 6096877 6097839 D identified by match to PFAM protein family HMM PF03466; LysR family transcriptional regulator 6096877..6097839 Pseudomonas putida KT2440 1042144 NP_747450.1 CDS PP_5349 NC_002947.3 6098030 6098182 R hypothetical protein complement(6098030..6098182) Pseudomonas putida KT2440 1042118 NP_747451.1 CDS PP_5350 NC_002947.3 6098212 6099078 R identified by match to TIGR protein family HMM TIGR00441; RpiR family transcriptional regulator complement(6098212..6099078) Pseudomonas putida KT2440 1042117 NP_747452.1 CDS zwf-3 NC_002947.3 6099167 6100624 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 6099167..6100624 Pseudomonas putida KT2440 1042114 NP_747453.1 CDS uvrD NC_002947.3 6100839 6103025 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 6100839..6103025 Pseudomonas putida KT2440 1042103 NP_747454.1 CDS PP_5353 NC_002947.3 6103158 6104012 D similar to GP:9951866; identified by sequence similarity; hypothetical protein 6103158..6104012 Pseudomonas putida KT2440 1042126 NP_747455.1 CDS PP_5354 NC_002947.3 6104126 6104533 D similar to GP:9951865; identified by sequence similarity; hypothetical protein 6104126..6104533 Pseudomonas putida KT2440 1041982 NP_747456.1 CDS PP_5355 NC_002947.3 6104688 6106448 R identified by match to PFAM protein family HMM PF03601; sodium/hydrogen exchanger complement(6104688..6106448) Pseudomonas putida KT2440 1042131 NP_747457.1 CDS PP_5356 NC_002947.3 6106788 6107273 D identified by match to PFAM protein family HMM PF01662; thioesterase 6106788..6107273 Pseudomonas putida KT2440 1042108 NP_747458.1 CDS pkxY NC_002947.3 6107270 6108142 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(6107270..6108142) Pseudomonas putida KT2440 1042125 NP_747459.1 CDS PP_5358 NC_002947.3 6108257 6108655 D hypothetical protein 6108257..6108655 Pseudomonas putida KT2440 1042132 NP_747460.1 CDS PP_5359 NC_002947.3 6108656 6109627 R identified by match to PFAM protein family HMM PF02492; CobW/P47K family protein complement(6108656..6109627) Pseudomonas putida KT2440 1042105 NP_747461.1 CDS PP_5360 NC_002947.3 6109668 6110294 R hypothetical protein complement(6109668..6110294) Pseudomonas putida KT2440 1042101 NP_747462.1 CDS PP_5361 NC_002947.3 6110291 6111499 R similar to GP:9951874, GB:X59303, GB:X91861, SP:P26640, and PID:31545; identified by sequence similarity; CobW/P47K family protein complement(6110291..6111499) Pseudomonas putida KT2440 1042099 NP_747463.1 CDS PP_5362 NC_002947.3 6111614 6111994 D similar to GP:9951876; identified by sequence similarity; hypothetical protein 6111614..6111994 Pseudomonas putida KT2440 1042093 NP_747464.1 CDS PP_5363 NC_002947.3 6112207 6112734 R similar to GP:48788, and GP:5805407; identified by sequence similarity; hypothetical protein complement(6112207..6112734) Pseudomonas putida KT2440 1042109 NP_747465.1 CDS cls NC_002947.3 6112861 6114306 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 6112861..6114306 Pseudomonas putida KT2440 1046267 NP_747466.1 CDS PP_5365 NC_002947.3 6114390 6115676 R similar to GB:J05070, SP:P14780, and PID:177205; identified by sequence similarity; cyclopropane-fatty-acyl-phospholipid synthase complement(6114390..6115676) Pseudomonas putida KT2440 1042112 NP_747467.1 CDS lpd3 NC_002947.3 6115782 6117182 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 6115782..6117182 Pseudomonas putida KT2440 1042081 NP_747468.1 CDS PP_5367 NC_002947.3 6117294 6117764 R similar to SP:P25060, GB:X56183, and PID:45442; identified by sequence similarity; transketolase domain-containing protein complement(6117294..6117764) Pseudomonas putida KT2440 1042104 NP_747469.1 CDS PP_5368 NC_002947.3 6117860 6119017 R identified by match to TIGR protein family HMM TIGR00900; major facilitator family transporter complement(6117860..6119017) Pseudomonas putida KT2440 1042083 NP_747470.1 CDS PP_5369 NC_002947.3 6119048 6119419 R similar to SP:P31586, PID:42189, SP:P31586, and PID:42189; identified by sequence similarity; hypothetical protein complement(6119048..6119419) Pseudomonas putida KT2440 1042087 NP_747471.1 CDS PP_5370 NC_002947.3 6119416 6120744 R identified by match to PFAM protein family HMM PF01593; oxidoreductase-like protein complement(6119416..6120744) Pseudomonas putida KT2440 1042084 NP_747472.1 CDS PP_5371 NC_002947.3 6120754 6122139 R similar to GP:13358862; identified by sequence similarity; rubredoxin/rubredoxin reductase complement(6120754..6122139) Pseudomonas putida KT2440 1042088 NP_747473.1 CDS PP_5372 NC_002947.3 6122152 6123597 R similar to GP:10172815, SP:P27301, GB:U14003, PID:537186, GB:U00096, and PID:1790803; identified by sequence similarity; aldehyde dehydrogenase complement(6122152..6123597) Pseudomonas putida KT2440 1042097 NP_747474.1 CDS PP_5373 NC_002947.3 6123608 6124798 R identified by match to PFAM protein family HMM PF00355; Rieske 2Fe-2S family protein complement(6123608..6124798) Pseudomonas putida KT2440 1046268 NP_747475.1 CDS PP_5374 NC_002947.3 6125196 6126899 D similar to GB:U04815, GB:U04818, GB:U04824, GB:U04816, GB:U04817, SP:P21127, PID:189481, PID:507158, PID:507160, PID:507162, PID:507164, PID:507166, PID:507168, PID:507427, and PID:507429; identified by sequence similarity; choline/carnitine/betaine transporter family protein 6125196..6126899 Pseudomonas putida KT2440 1042082 NP_747476.1 CDS PP_5375 NC_002947.3 6126966 6127874 R similar to GB:L17326, and PID:306325; identified by sequence similarity; LysR family transcriptional regulator complement(6126966..6127874) Pseudomonas putida KT2440 1042743 NP_747477.1 CDS PP_5376 NC_002947.3 6128796 6129128 D similar to GP:12484570; identified by sequence similarity; hypothetical protein 6128796..6129128 Pseudomonas putida KT2440 1046208 NP_747478.1 CDS PP_5377 NC_002947.3 6129195 6129650 R identified by match to PFAM protein family HMM PF04214; hypothetical protein complement(6129195..6129650) Pseudomonas putida KT2440 1042086 NP_747479.1 CDS PP_5378 NC_002947.3 6129640 6130422 R identified by match to PFAM protein family HMM PF00034; cytochrome c family protein complement(6129640..6130422) Pseudomonas putida KT2440 1042056 NP_747480.1 CDS copB NC_002947.3 6130432 6131541 R copper resistance B complement(6130432..6131541) Pseudomonas putida KT2440 1042067 NP_747481.1 CDS copA NC_002947.3 6131833 6133842 R similar to GB:X12901, GB:A07400, GB:X04657, GB:A14103, SP:P09327, PID:1247443, PID:37843, PID:37845, PID:412172, and PID:579563; identified by sequence similarity; copper resistance protein A complement(6131833..6133842) Pseudomonas putida KT2440 1042128 NP_747482.1 CDS PP_5381 NC_002947.3 6134038 6134292 D hypothetical protein 6134038..6134292 Pseudomonas putida KT2440 1042072 NP_747483.1 CDS PP_5382 NC_002947.3 6134424 6134783 R hypothetical protein complement(6134424..6134783) Pseudomonas putida KT2440 1042062 NP_747484.1 CDS copR NC_002947.3 6134976 6135653 D similar to GP:6045171, GB:D11428, GB:M94048, GB:L03203, GB:X65968, GB:S61788, SP:Q01453, PID:182985, PID:190131, PID:220010, and PID:31653; identified by sequence similarity; two component heavy metal response transcriptional regulator 6134976..6135653 Pseudomonas putida KT2440 1042060 NP_747485.1 CDS copS NC_002947.3 6135650 6137059 D similar to GB:D13627, GB:Z37163, SP:P50990, PID:1136741, PID:286011, PID:992595, GB:D13627, GB:Z37163, SP:P50990, PID:1136741, PID:286011, and PID:992595; identified by sequence similarity; heavy metal sensor signal transduction histidine kinase 6135650..6137059 Pseudomonas putida KT2440 1042070 NP_747486.1 CDS PP_5385 NC_002947.3 6137536 6138789 D similar to SP:P13509, GB:X52195, GB:M60470, GB:M63259, GB:M63260, GB:M63261, GB:M63262, SP:P20292, PID:182658, and PID:31426; identified by sequence similarity; CzcC family heavy metal RND efflux outer membrane protein 6137536..6138789 Pseudomonas putida KT2440 1042050 NP_747487.1 CDS PP_5386 NC_002947.3 6138786 6140258 D similar to GP:8388788, and SP:Q9ZHD0; identified by sequence similarity; CzcB family heavy metal RND efflux membrane fusion protein 6138786..6140258 Pseudomonas putida KT2440 1043341 NP_747488.1 CDS PP_5387 NC_002947.3 6140255 6143413 D similar to GP:8388789; identified by sequence similarity; CzcA family heavy metal RND efflux protein 6140255..6143413 Pseudomonas putida KT2440 1042073 NP_747489.1 CDS PP_5388 NC_002947.3 6143410 6143751 D hypothetical protein 6143410..6143751 Pseudomonas putida KT2440 1042071 NP_747490.1 CDS PP_5389 NC_002947.3 6144770 6145429 R identified by match to PFAM protein family HMM PF04140; hypothetical protein complement(6144770..6145429) Pseudomonas putida KT2440 1042037 NP_747491.1 CDS PP_5390 NC_002947.3 6145426 6145701 R hypothetical protein complement(6145426..6145701) Pseudomonas putida KT2440 1042043 NP_747492.1 CDS PP_5391 NC_002947.3 6145727 6146308 R hypothetical protein complement(6145727..6146308) Pseudomonas putida KT2440 1042046 NP_747493.1 CDS PP_5392 NC_002947.3 6146318 6147451 R similar to GB:X64062, SP:Q00637, PID:1335657, and PID:409457; identified by sequence similarity; hypothetical protein complement(6146318..6147451) Pseudomonas putida KT2440 1042052 NP_747494.1 CDS PP_5393 NC_002947.3 6147606 6147806 R similar to GP:8388756; identified by sequence similarity; heavy metal transport/detoxification protein complement(6147606..6147806) Pseudomonas putida KT2440 1042049 NP_747495.1 CDS PP_5395 NC_002947.3 6150980 6151825 D similar to GB:S69137; identified by sequence similarity; hypothetical protein 6150980..6151825 Pseudomonas putida KT2440 1042044 NP_747496.1 CDS PP_5396 NC_002947.3 6152929 6154464 R similar to GP:3414883, and GP:5824139; identified by sequence similarity; ISPpu14, transposase Orf3 complement(6152929..6154464) Pseudomonas putida KT2440 1041602 NP_747497.1 CDS PP_5397 NC_002947.3 6154528 6154863 R similar to GP:4928612, and GP:6009406; identified by sequence similarity; ISPpu14, transposase Orf2 complement(6154528..6154863) Pseudomonas putida KT2440 1042059 NP_747498.1 CDS PP_5398 NC_002947.3 6154860 6155180 R similar to GP:2773259, and GP:2773259; identified by sequence similarity; ISPpu14, transposase Orf1 complement(6154860..6155180) Pseudomonas putida KT2440 1046068 NP_747499.1 CDS PP_5399 NC_002947.3 6155386 6156156 R hypothetical protein complement(6155386..6156156) Pseudomonas putida KT2440 1041619 NP_747500.1 CDS PP_5400 NC_002947.3 6156551 6157618 D hypothetical protein 6156551..6157618 Pseudomonas putida KT2440 1042033 NP_747501.1 CDS PP_5401 NC_002947.3 6157627 6158268 D hypothetical protein 6157627..6158268 Pseudomonas putida KT2440 1042035 NP_747502.1 CDS PP_5402 NC_002947.3 6159521 6160309 R identified by match to PFAM protein family HMM PF02146; Sir2 family transcriptional regulator complement(6159521..6160309) Pseudomonas putida KT2440 1042029 NP_747503.1 CDS PP_5403 NC_002947.3 6161583 6161894 D hypothetical protein 6161583..6161894 Pseudomonas putida KT2440 1042023 NP_747504.1 CDS PP_5404 NC_002947.3 6161917 6163263 R similar to GB:L13740, SP:P22736, PID:1813882, and PID:292834; identified by sequence similarity; transposition protein, TnsC-like protein complement(6161917..6163263) Pseudomonas putida KT2440 1042030 NP_747505.1 CDS PP_5405 NC_002947.3 6163260 6165272 R similar to GB:M27382, PID:1552513, PID:292777, PID:37647, PID:493024, PID:563891, and PID:975609; identified by sequence similarity; transposase, TnsB-like protein complement(6163260..6165272) Pseudomonas putida KT2440 1046200 NP_747506.1 CDS PP_5406 NC_002947.3 6165269 6166231 R similar to SP:P13988; identified by sequence similarity; transposase, TnsA-like protein complement(6165269..6166231) Pseudomonas putida KT2440 1042040 NP_747507.1 CDS PP_5407 NC_002947.3 6166911 6168509 D similar to GP:2653997, GB:L11672, GB:M61871, SP:P17031, SP:P17040, SP:Q05481, PID:186774, PID:930083, and PID:930092; identified by sequence similarity; transposition protein, TnsD-like protein 6166911..6168509 Pseudomonas putida KT2440 1042048 NP_747508.1 CDS PP_5408 NC_002947.3 6169103 6170284 R hypothetical protein complement(6169103..6170284) Pseudomonas putida KT2440 1042011 NP_747509.1 CDS glmS NC_002947.3 6170456 6172291 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(6170456..6172291) Pseudomonas putida KT2440 1041649 NP_747510.1 CDS PP_5410 NC_002947.3 6172295 6173071 R identified by match to PFAM protein family HMM PF00455; DeoR family transcriptional regulator complement(6172295..6173071) Pseudomonas putida KT2440 1042019 NP_747511.1 CDS glmU NC_002947.3 6173261 6174628 R identified by match to TIGR protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase complement(6173261..6174628) Pseudomonas putida KT2440 1045333 NP_747512.1 CDS atpC NC_002947.3 6174747 6175166 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(6174747..6175166) Pseudomonas putida KT2440 1042025 NP_747513.1 CDS atpD NC_002947.3 6175210 6176586 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(6175210..6176586) Pseudomonas putida KT2440 1042005 NP_747514.1 CDS atpG NC_002947.3 6176614 6177474 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(6176614..6177474) Pseudomonas putida KT2440 1042016 NP_747515.1 CDS atpA NC_002947.3 6177523 6179067 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(6177523..6179067) Pseudomonas putida KT2440 1042014 NP_747516.1 CDS atpH NC_002947.3 6179089 6179625 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(6179089..6179625) Pseudomonas putida KT2440 1042018 NP_747517.1 CDS atpF NC_002947.3 6179638 6180108 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(6179638..6180108) Pseudomonas putida KT2440 1046071 NP_747518.1 CDS atpE NC_002947.3 6180165 6180422 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(6180165..6180422) Pseudomonas putida KT2440 1041990 NP_747519.1 CDS atpB NC_002947.3 6180567 6181436 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(6180567..6181436) Pseudomonas putida KT2440 1045265 NP_747520.1 CDS atpI NC_002947.3 6181453 6181860 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(6181453..6181860) Pseudomonas putida KT2440 1042004 PP_t01 tRNA PP_t01 NC_002947.3 255281 255354 R tRNA-Arg complement(255281..255354) Pseudomonas putida KT2440 3370776 PP_t02 tRNA PP_t02 NC_002947.3 334974 335046 R tRNA-Thr complement(334974..335046) Pseudomonas putida KT2440 3370775 PP_t03 tRNA PP_t03 NC_002947.3 344101 344173 R tRNA-Phe complement(344101..344173) Pseudomonas putida KT2440 3370774 PP_t04 tRNA PP_t04 NC_002947.3 467122 467195 R tRNA-Met complement(467122..467195) Pseudomonas putida KT2440 3370773 PP_t05 tRNA PP_t05 NC_002947.3 532369 532449 D tRNA-Tyr 532369..532449 Pseudomonas putida KT2440 3370703 PP_t06 tRNA PP_t06 NC_002947.3 532477 532547 D tRNA-Gly 532477..532547 Pseudomonas putida KT2440 3370704 PP_t07 tRNA PP_t07 NC_002947.3 532580 532652 D tRNA-Thr 532580..532652 Pseudomonas putida KT2440 3370705 PP_t08 tRNA PP_t08 NC_002947.3 533982 534054 D tRNA-Trp 533982..534054 Pseudomonas putida KT2440 3370706 PP_t09 tRNA PP_t09 NC_002947.3 699429 699502 D tRNA-Ile 699429..699502 Pseudomonas putida KT2440 3370707 PP_t10 tRNA PP_t10 NC_002947.3 699530 699602 D tRNA-Ala 699530..699602 Pseudomonas putida KT2440 3370708 PP_t11 tRNA PP_t11 NC_002947.3 733386 733458 D tRNA-Asn 733386..733458 Pseudomonas putida KT2440 3370709 PP_t12 tRNA PP_t12 NC_002947.3 733466 733539 D tRNA-Pro 733466..733539 Pseudomonas putida KT2440 3370710 PP_t13 tRNA PP_t13 NC_002947.3 733549 733621 D tRNA-Lys 733549..733621 Pseudomonas putida KT2440 3370711 PP_t14 tRNA PP_t14 NC_002947.3 733671 733744 D tRNA-Pro 733671..733744 Pseudomonas putida KT2440 3370712 PP_t15 tRNA PP_t15 NC_002947.3 733753 733825 D tRNA-Lys 733753..733825 Pseudomonas putida KT2440 3370713 PP_t16 tRNA PP_t16 NC_002947.3 741323 741395 D tRNA-Thr 741323..741395 Pseudomonas putida KT2440 3370714 PP_t17 tRNA PP_t17 NC_002947.3 813225 813298 R tRNA-Met complement(813225..813298) Pseudomonas putida KT2440 3370772 PP_t18 tRNA PP_t18 NC_002947.3 839747 839818 R tRNA-Gln complement(839747..839818) Pseudomonas putida KT2440 3370771 PP_t19 tRNA PP_t19 NC_002947.3 968899 968980 R tRNA-Leu complement(968899..968980) Pseudomonas putida KT2440 3370770 PP_t20 tRNA PP_t20 NC_002947.3 1380537 1380610 R tRNA-Met complement(1380537..1380610) Pseudomonas putida KT2440 3370769 PP_t21 tRNA PP_t21 NC_002947.3 1380748 1380821 R tRNA-Met complement(1380748..1380821) Pseudomonas putida KT2440 3370768 PP_t22 tRNA PP_t22 NC_002947.3 1380959 1381032 R tRNA-Met complement(1380959..1381032) Pseudomonas putida KT2440 3370767 PP_t23 tRNA PP_t23 NC_002947.3 1402404 1402476 D tRNA-Lys 1402404..1402476 Pseudomonas putida KT2440 3370715 PP_t24 tRNA PP_t24 NC_002947.3 1418342 1418428 D tRNA-OTHER 1418342..1418428 Pseudomonas putida KT2440 3370716 PP_t25 tRNA PP_t25 NC_002947.3 1606460 1606530 R tRNA-Gly complement(1606460..1606530) Pseudomonas putida KT2440 3370766 PP_t26 tRNA PP_t26 NC_002947.3 1898426 1898498 D tRNA-Val 1898426..1898498 Pseudomonas putida KT2440 3370717 PP_t27 tRNA PP_t27 NC_002947.3 1898515 1898588 D tRNA-Asp 1898515..1898588 Pseudomonas putida KT2440 3370718 PP_t28 tRNA PP_t28 NC_002947.3 1898762 1898834 D tRNA-Val 1898762..1898834 Pseudomonas putida KT2440 3370719 PP_t29 tRNA PP_t29 NC_002947.3 1898851 1898924 D tRNA-Asp 1898851..1898924 Pseudomonas putida KT2440 3370720 PP_t30 tRNA PP_t30 NC_002947.3 2069061 2069147 D tRNA-Ser 2069061..2069147 Pseudomonas putida KT2440 3370721 PP_t31 tRNA PP_t31 NC_002947.3 2102637 2102709 D tRNA-Glu 2102637..2102709 Pseudomonas putida KT2440 3370722 PP_t32 tRNA PP_t32 NC_002947.3 2102715 2102787 D tRNA-Gly 2102715..2102787 Pseudomonas putida KT2440 3370723 PP_t33 tRNA PP_t33 NC_002947.3 2102883 2102955 D tRNA-Glu 2102883..2102955 Pseudomonas putida KT2440 3370724 PP_t34 tRNA PP_t34 NC_002947.3 2102962 2103034 D tRNA-Gly 2102962..2103034 Pseudomonas putida KT2440 3370725 PP_t35 tRNA PP_t35 NC_002947.3 2103123 2103195 D tRNA-Gly 2103123..2103195 Pseudomonas putida KT2440 3370726 PP_t36 tRNA PP_t36 NC_002947.3 2233271 2233343 R tRNA-Asn complement(2233271..2233343) Pseudomonas putida KT2440 3370765 PP_t37 tRNA PP_t37 NC_002947.3 2241531 2241603 D tRNA-Ala 2241531..2241603 Pseudomonas putida KT2440 3370727 PP_t38 tRNA PP_t38 NC_002947.3 2241679 2241751 D tRNA-Glu 2241679..2241751 Pseudomonas putida KT2440 3370728 PP_t39 tRNA PP_t39 NC_002947.3 2241806 2241878 D tRNA-Ala 2241806..2241878 Pseudomonas putida KT2440 3370729 PP_t40 tRNA PP_t40 NC_002947.3 2241924 2241996 D tRNA-Glu 2241924..2241996 Pseudomonas putida KT2440 3370730 PP_t41 tRNA PP_t41 NC_002947.3 2242061 2242133 D tRNA-Ala 2242061..2242133 Pseudomonas putida KT2440 3370731 PP_t42 tRNA PP_t42 NC_002947.3 2242179 2242251 D tRNA-Glu 2242179..2242251 Pseudomonas putida KT2440 3370732 PP_t43 tRNA PP_t43 NC_002947.3 2271396 2271468 D tRNA-Val 2271396..2271468 Pseudomonas putida KT2440 3370733 PP_t44 tRNA PP_t44 NC_002947.3 2271537 2271610 D tRNA-Asp 2271537..2271610 Pseudomonas putida KT2440 3370734 PP_t45 tRNA PP_t45 NC_002947.3 2271713 2271786 D tRNA-Asp 2271713..2271786 Pseudomonas putida KT2440 3370735 PP_t46 tRNA PP_t46 NC_002947.3 2271931 2272004 D tRNA-Asp 2271931..2272004 Pseudomonas putida KT2440 3370736 PP_t47 tRNA PP_t47 NC_002947.3 2420624 2420697 R tRNA-Pro complement(2420624..2420697) Pseudomonas putida KT2440 3370764 PP_t48 tRNA PP_t48 NC_002947.3 2550294 2550367 D tRNA-Ile 2550294..2550367 Pseudomonas putida KT2440 3370737 PP_t49 tRNA PP_t49 NC_002947.3 2550395 2550467 D tRNA-Ala 2550395..2550467 Pseudomonas putida KT2440 3370738 PP_t50 tRNA PP_t50 NC_002947.3 2585761 2585834 D tRNA-Arg 2585761..2585834 Pseudomonas putida KT2440 3370739 PP_t51 tRNA PP_t51 NC_002947.3 2585879 2585951 D tRNA-His 2585879..2585951 Pseudomonas putida KT2440 3370740 PP_t52 tRNA PP_t52 NC_002947.3 2586007 2586088 D tRNA-Leu 2586007..2586088 Pseudomonas putida KT2440 3370741 PP_t53 tRNA PP_t53 NC_002947.3 2626119 2626191 D tRNA-His 2626119..2626191 Pseudomonas putida KT2440 3370742 PP_t54 tRNA PP_t54 NC_002947.3 2685139 2685210 D tRNA-Gln 2685139..2685210 Pseudomonas putida KT2440 3370743 PP_t55 tRNA PP_t55 NC_002947.3 2796488 2796561 D tRNA-Val 2796488..2796561 Pseudomonas putida KT2440 3370744 PP_t56 tRNA PP_t56 NC_002947.3 2796737 2796810 D tRNA-Val 2796737..2796810 Pseudomonas putida KT2440 3370745 PP_t57 tRNA PP_t57 NC_002947.3 2817001 2817074 D tRNA-Pro 2817001..2817074 Pseudomonas putida KT2440 3370746 PP_t58 tRNA PP_t58 NC_002947.3 4361679 4361760 D tRNA-Leu 4361679..4361760 Pseudomonas putida KT2440 3370747 PP_t59 tRNA PP_t59 NC_002947.3 4427519 4427589 R tRNA-Cys complement(4427519..4427589) Pseudomonas putida KT2440 3370763 PP_t60 tRNA PP_t60 NC_002947.3 4501318 4501402 R tRNA-Ser complement(4501318..4501402) Pseudomonas putida KT2440 3370762 PP_t61 tRNA PP_t61 NC_002947.3 4632553 4632625 R tRNA-Gly complement(4632553..4632625) Pseudomonas putida KT2440 3370761 PP_t62 tRNA PP_t62 NC_002947.3 5075554 5075625 R tRNA-Arg complement(5075554..5075625) Pseudomonas putida KT2440 3370760 PP_t63 tRNA PP_t63 NC_002947.3 5075760 5075828 R tRNA-Arg complement(5075760..5075828) Pseudomonas putida KT2440 3370759 PP_t64 tRNA PP_t64 NC_002947.3 5079153 5079226 R tRNA-Arg complement(5079153..5079226) Pseudomonas putida KT2440 3370758 PP_t65 tRNA PP_t65 NC_002947.3 5079303 5079376 R tRNA-Arg complement(5079303..5079376) Pseudomonas putida KT2440 3370757 PP_t66 tRNA PP_t66 NC_002947.3 5079454 5079527 R tRNA-Arg complement(5079454..5079527) Pseudomonas putida KT2440 3370756 PP_t67 tRNA PP_t67 NC_002947.3 5079602 5079675 R tRNA-Arg complement(5079602..5079675) Pseudomonas putida KT2440 3370755 PP_t68 tRNA PP_t68 NC_002947.3 5079785 5079872 R tRNA-Ser complement(5079785..5079872) Pseudomonas putida KT2440 3370754 PP_t69 tRNA PP_t69 NC_002947.3 5310825 5310897 R tRNA-Ala complement(5310825..5310897) Pseudomonas putida KT2440 3370753 PP_t70 tRNA PP_t70 NC_002947.3 5310997 5311070 R tRNA-Ile complement(5310997..5311070) Pseudomonas putida KT2440 3370752 PP_t71 tRNA PP_t71 NC_002947.3 5360918 5360991 R tRNA-Met complement(5360918..5360991) Pseudomonas putida KT2440 3370751 PP_t72 tRNA PP_t72 NC_002947.3 5361095 5361177 R tRNA-Leu complement(5361095..5361177) Pseudomonas putida KT2440 3370750 PP_t73 tRNA PP_t73 NC_002947.3 5549323 5549406 D tRNA-Leu 5549323..5549406 Pseudomonas putida KT2440 3370748 PP_t74 tRNA PP_t74 NC_002947.3 5549498 5549581 D tRNA-Leu 5549498..5549581 Pseudomonas putida KT2440 3370749 PP_16SA rRNA PP_16SA NC_002947.3 171387 172904 D 16S ribosomal RNA 171387..172904 Pseudomonas putida KT2440 1043673 PP_23SA rRNA PP_23SA NC_002947.3 173201 176102 D 23S ribosomal RNA 173201..176102 Pseudomonas putida KT2440 1043674 PP_5SA rRNA PP_5SA NC_002947.3 176235 176354 D 5S ribosomal RNA 176235..176354 Pseudomonas putida KT2440 1043677 PP_16SB rRNA PP_16SB NC_002947.3 176817 178334 D 16S ribosomal RNA 176817..178334 Pseudomonas putida KT2440 1043679 PP_23SB rRNA PP_23SB NC_002947.3 178631 181532 D 23S ribosomal RNA 178631..181532 Pseudomonas putida KT2440 1043681 PP_r01 rRNA PP_r01 NC_002947.3 181665 181784 D 5S ribosomal RNA 181665..181784 Pseudomonas putida KT2440 3370702 PP_5SB rRNA PP_5SB NC_002947.3 181890 182009 D 5S ribosomal RNA 181890..182009 Pseudomonas putida KT2440 1043682 PP_16SC rRNA PP_16SC NC_002947.3 524947 526464 D 16S ribosomal RNA 524947..526464 Pseudomonas putida KT2440 1044170 PP_23SC rRNA PP_23SC NC_002947.3 526761 529662 D 23S ribosomal RNA 526761..529662 Pseudomonas putida KT2440 1044171 PP_5SC rRNA PP_5SC NC_002947.3 529782 529901 D 5S ribosomal RNA 529782..529901 Pseudomonas putida KT2440 1044175 PP_16SD rRNA PP_16SD NC_002947.3 697822 699339 D 16S ribosomal RNA 697822..699339 Pseudomonas putida KT2440 1044409 PP_23SD rRNA PP_23SD NC_002947.3 699849 702750 D 23S ribosomal RNA 699849..702750 Pseudomonas putida KT2440 1044410 PP_5SD rRNA PP_5SD NC_002947.3 702882 703001 D 5S ribosomal RNA 702882..703001 Pseudomonas putida KT2440 1044411 PP_16SE rRNA PP_16SE NC_002947.3 1325501 1327018 D 16S ribosomal RNA 1325501..1327018 Pseudomonas putida KT2440 1045690 PP_23SE rRNA PP_23SE NC_002947.3 1327315 1330216 D 23S ribosomal RNA 1327315..1330216 Pseudomonas putida KT2440 1045665 PP_5SE rRNA PP_5SE NC_002947.3 1330348 1330467 D 5S ribosomal RNA 1330348..1330467 Pseudomonas putida KT2440 1045517 PP_16SF rRNA PP_16SF NC_002947.3 2548687 2550204 D 16S ribosomal RNA 2548687..2550204 Pseudomonas putida KT2440 1045117 PP_23SF rRNA PP_23SF NC_002947.3 2550714 2553615 D 23S ribosomal RNA 2550714..2553615 Pseudomonas putida KT2440 1045119 PP_5SF rRNA PP_5SF NC_002947.3 2553747 2553866 D 5S ribosomal RNA 2553747..2553866 Pseudomonas putida KT2440 1045120 PP_5SG rRNA PP_5SG NC_002947.3 5307435 5307554 R 5S ribosomal RNA complement(5307435..5307554) Pseudomonas putida KT2440 1041959 PP_23SG rRNA PP_23SG NC_002947.3 5307686 5310587 R 23S ribosomal RNA complement(5307686..5310587) Pseudomonas putida KT2440 1041977 PP_16SG rRNA PP_16SG NC_002947.3 5311162 5312679 R 16S ribosomal RNA complement(5311162..5312679) Pseudomonas putida KT2440 1044736