-- dump date   	20120504_155712
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004330139.1	SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: ami:Amir_0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal
YP_004330140.1	SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: amd:AMED_0002 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, C-terminal
YP_004330141.1	TIGRFAM: DNA-binding, RecF; HAMAP: DNA-binding, RecF; KEGG: ami:Amir_0004 recombination protein F; PFAM: RecF/RecN/SMC
YP_004330142.1	KEGG: sen:SACE_0006 hypothetical protein; HAMAP: Uncharacterised protein family UPF0232, actinobacteria; PFAM: Protein of unknown function DUF721/UPF0232
YP_004330143.1	SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase, subunit B; KEGG: rha:RHA1_ro03674 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal
YP_004330144.1	SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: sen:SACE_0009 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel
YP_004330145.1	KEGG: ami:Amir_0008 hypothetical protein
YP_004330147.1	PFAM: Integrase, catalytic core, phage; KEGG: fri:FraEuI1c_5809 integrase protein
YP_004330149.1	KEGG: nar:Saro_3091 hypothetical protein
YP_004330152.1	PFAM: Transposase, IS4-like; KEGG: sen:SACE_4676 IS402-like transposase
YP_004330153.1	PFAM: Integrase, catalytic core; KEGG: cai:Caci_3873 integrase catalytic region
YP_004330154.1	KEGG: cai:Caci_3872 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004330155.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004330157.1	PFAM: Isochorismatase-like; KEGG: saq:Sare_1936 isochorismatase hydrolase
YP_004330158.1	KEGG: saq:Sare_1935 hypothetical protein
YP_004330159.1	KEGG: kfl:Kfla_2179 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004330160.1	TIGRFAM: Excisionase/Xis, DNA-binding
YP_004330162.1	KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004330163.1	PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase
YP_004330166.1	KEGG: kfl:Kfla_2184 type IV secretory pathway VirD4 protein-like protein
YP_004330167.1	KEGG: kfl:Kfla_2188 hypothetical protein
YP_004330169.1	KEGG: mlu:Mlut_00270 hypothetical protein
YP_004330170.1	PFAM: TrwC relaxase; KEGG: kfl:Kfla_2190 TrwC relaxase
YP_004330171.1	KEGG: stp:Strop_4139 RNA-directed DNA polymerase; PFAM: Reverse transcriptase; Group II intron, maturase-specific
YP_004330173.1	KEGG: stp:Strop_2011 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004330174.1	TIGRFAM: ATPase, P-type, heavy metal translocating; KEGG: ami:Amir_4284 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_004330175.1	KEGG: ttr:Tter_2338 MgtE intracellular region; PFAM: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; SMART: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core
YP_004330176.1	PFAM: Natural resistance-associated macrophage protein; KEGG: ttr:Tter_2339 natural resistance-associated macrophage protein
YP_004330177.1	KEGG: mgi:Mflv_1496 hypothetical protein
YP_004330178.1	KEGG: amd:AMED_8638 UDP-N-acetylmuramyl tripeptide synthase; manually curated; PFAM: Domain of unknown function DUF1727; Mur ligase, central
YP_004330179.1	PFAM: CobB/CobQ-like glutamine amidotransferase; KEGG: tpr:Tpau_4003 CobB/CobQ domain protein glutamine amidotransferase
YP_004330181.1	KEGG: rop:ROP_41980 hypothetical membrane protein
YP_004330182.1	KEGG: gob:Gobs_3530 transposase
YP_004330183.1	KEGG: gob:Gobs_3530 transposase
YP_004330184.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004330185.1	KEGG: amd:AMED_7688 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator
YP_004330186.1	KEGG: ami:Amir_0798 sec-independent translocase; manually curated; TIGRFAM: Twin-arginine translocation protein TatB
YP_004330187.1	KEGG: fra:Francci3_2368 zinc/iron permease
YP_004330188.1	SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Non-ribosomal peptide synthetase C-terminal; Amino acid adenylation; KEGG: req:REQ_05560 non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Bacterial transferase hexapeptide repeat
YP_004330189.1	KEGG: rha:RHA1_ro01089 cell division protein, FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein
YP_004330190.1	PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: amd:AMED_1208 hypothetical protein
YP_004330191.1	KEGG: nml:Namu_2480 hypothetical protein
YP_004330192.1	KEGG: nml:Namu_2159 twin-arginine translocation protein, TatB subunit; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_004330193.1	PFAM: Integrase, catalytic core; KEGG: mtb:TBMG_03231 transposase
YP_004330194.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fri:FraEuI1c_1501 transposase IS116/IS110/IS902 family protein
YP_004330195.1	KEGG: sro:Sros_2709 membrane protein-like protein
YP_004330196.1	PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like; KEGG: sgr:SGR_4241  FAD-dependent oxygenase
YP_004330197.1	KEGG: nml:Namu_4693 winged helix family transcriptional regulator; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; NB-ARC; SMART: Signal transduction response regulator, C-terminal; ATPase, AAA+ type, core
YP_004330198.1	PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: nfa:nfa32860 hypothetical protein
YP_004330199.1	KEGG: mex:Mext_3068 monooxygenase FAD-binding; PFAM: Monooxygenase, FAD-binding
YP_004330200.1	KEGG: amd:AMED_3321 ArsR family transcriptional regulator; PFAM: Protein-tyrosine phosphatase, low molecular weight; HTH transcriptional regulator, ArsR; SMART: Protein-tyrosine phosphatase, low molecular weight; HTH transcriptional regulator, ArsR
YP_004330201.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amd:AMED_3320 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004330202.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rha:RHA1_ro10195 4-hydroxybenzoate transporter
YP_004330203.1	KEGG: rha:RHA1_ro07102 hypothetical protein
YP_004330204.1	KEGG: rha:RHA1_ro10196 ferredoxin--NAD(+) reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin
YP_004330205.1	KEGG: rha:RHA1_ro10197 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA
YP_004330206.1	PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: rha:RHA1_ro10198 aromatic ring dioxygenase beta subunit
YP_004330207.1	TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: rha:RHA1_ro10200 IclR family transcriptional regulator; SMART: Transcription regulator IclR, N-terminal
YP_004330208.1	PFAM: Methyltransferase type 12; KEGG: nfa:nfa21360 hypothetical protein
YP_004330209.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sen:SACE_6324 peptide ABC transporter peptide-binding protein
YP_004330210.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: kfl:Kfla_5744 binding-protein-dependent transport systems inner membrane component
YP_004330211.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: scb:SCAB_81881 transporter integral membrane protein
YP_004330212.1	PFAM: ABC transporter-like; KEGG: sro:Sros_5586 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core
YP_004330213.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sro:Sros_0182 amino acid transporter LysE
YP_004330214.1	KEGG: sco:SCO3361 transcription regulator AsnC; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004330215.1	KEGG: amd:AMED_4131 chemotaxis-specific methylesterase CheB; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase
YP_004330216.1	KEGG: bcv:Bcav_1669 ANTAR domain protein with unknown sensor; PFAM: ANTAR; GAF; SMART: GAF
YP_004330217.1	KEGG: tpr:Tpau_3922 hypothetical protein
YP_004330218.1	PFAM: Protein of unknown function DUF485; KEGG: xce:Xcel_1074 protein of unknown function DUF485
YP_004330219.1	KEGG: amd:AMED_1584 solute:Na+ symporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter
YP_004330220.1	KEGG: sco:SCO0406 hypothetical protein
YP_004330221.1	KEGG: sro:Sros_4910  transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; PBS lyase HEAT-like repeat; SMART: HTH transcriptional regulator, MerR
YP_004330222.1	KEGG: rha:RHA1_ro05161 hypothetical protein
YP_004330223.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mil:ML5_1284 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004330224.1	PFAM: YCII-related; KEGG: nfa:nfa38190 hypothetical protein
YP_004330225.1	KEGG: nda:Ndas_2135  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004330226.1	PFAM: Uncharacterised protein family UPF0126; KEGG: bcm:Bcenmc03_5111 hypothetical protein
YP_004330227.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: gob:Gobs_3191 bifunctional deaminase-reductase domain-containing protein
YP_004330228.1	KEGG: sro:Sros_6337 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004330229.1	PFAM: MaoC-like dehydratase; KEGG: nca:Noca_4064 dehydratase
YP_004330230.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: rxy:Rxyl_2379 zinc-binding alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004330231.1	PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein
YP_004330232.1	KEGG: ace:Acel_0074 hypothetical protein
YP_004330233.1	PFAM: MT-A70; KEGG: ace:Acel_2063 MT-A70 family protein
YP_004330234.1	KEGG: sen:SACE_7244 DeoR family transcriptional regulator
YP_004330235.1	PFAM: FAD linked oxidase, N-terminal; KEGG: sen:SACE_7243 FAD-dependent oxygenase
YP_004330236.1	KEGG: cur:cur_1817  Fe-S oxidoreductase
YP_004330237.1	KEGG: ami:Amir_0659 dipeptidylaminopeptidase/acylaminoacyl-peptidase-like protein
YP_004330239.1	KEGG: gbr:Gbro_0020 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
YP_004330240.1	PFAM: Peptidase S54, rhomboid domain; KEGG: req:REQ_00180 serine peptidase
YP_004330241.1	KEGG: saq:Sare_4994 hypothetical protein
YP_004330242.1	PFAM: Uncharacterised protein family UPF0233; KEGG: svi:Svir_00290  septation inhibitor protein
YP_004330243.1	TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: svi:Svir_00350 anthranilate synthase, component II; PFAM: Glutamine amidotransferase class-I, C-terminal
YP_004330244.1	PFAM: Serine/threonine-protein kinase-like domain; PASTA; KEGG: ami:Amir_0021 serine/threonine protein kinase with PASTA sensor(s); SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; PASTA
YP_004330245.1	PFAM: Serine/threonine-protein kinase-like domain; KEGG: ami:Amir_0022 serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004330246.1	KEGG: req:REQ_00250 penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase
YP_004330247.1	PFAM: Cell cycle protein; KEGG: nfa:nfa830  cell division protein
YP_004330248.1	PFAM: Protein phosphatase 2C, N-terminal; KEGG: sen:SACE_0048 protein serine/threonine phosphatases; SMART: Protein phosphatase 2C-like
YP_004330249.1	KEGG: sen:SACE_0049 FHA domain-containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain
YP_004330250.1	KEGG: amd:AMED_0057 FHA domain-containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain
YP_004330251.1	KEGG: mil:ML5_5510 hypothetical protein
YP_004330252.1	KEGG: kfl:Kfla_3461 hypothetical protein
YP_004330253.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: scb:SCAB_90371 hypothetical protein
YP_004330254.1	KEGG: sen:SACE_6393 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004330255.1	KEGG: svi:Svir_24560 flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup
YP_004330256.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rxy:Rxyl_1586 methionine synthase, vitamin-B12 independent
YP_004330257.1	KEGG: gob:Gobs_4382 haloacid dehalogenase I; TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase
YP_004330258.1	PFAM: Domain of unknown function DUF59; KEGG: gob:Gobs_1749 hypothetical protein
YP_004330259.1	PFAM: Amidohydrolase 2; KEGG: amd:AMED_4328 amidohydrolase
YP_004330260.1	KEGG: gob:Gobs_1750 alcohol dehydrogenase GroES domain-containing protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_004330261.1	PFAM: Limonene-1,2-epoxide hydrolase; KEGG: cai:Caci_4134 4-oxalocrotonate tautomerase
YP_004330262.1	KEGG: sen:SACE_5343 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330263.1	KEGG: ami:Amir_0304 hypothetical protein
YP_004330264.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: tfu:Tfu_2676 hypothetical protein
YP_004330265.1	KEGG: kra:Krad_4083 pyridine nucleotide-disulphide oxidoreductase dimerisation region; PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004330266.1	PFAM: Copper resistance D; KEGG: sen:SACE_0677 copper resistance transporter
YP_004330267.1	PFAM: Copper resistance protein CopC, core; KEGG: sen:SACE_0073 copper resistance protein
YP_004330268.1	PFAM: GLE1, N-terminal, bacteria; KEGG: sen:SACE_0074 hypothetical protein
YP_004330269.1	KEGG: amd:AMED_0095 hypothetical protein
YP_004330270.1	KEGG: rer:RER_01330 hypothetical protein
YP_004330271.1	TIGRFAM: RecB family nuclease, TM0106, KEGG: ami:Amir_0046 nuclease (RecB family)-like protein
YP_004330272.1	TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sen:SACE_5565 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_004330273.1	KEGG: sen:SACE_2073 methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding
YP_004330274.1	KEGG: sen:SACE_7200 hypothetical protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like
YP_004330275.1	KEGG: amd:AMED_9128 MFS transporter, multidrug efflux transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; Collagen-binding surface protein Cna-like, B-type domain
YP_004330276.1	KEGG: ami:Amir_0305 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004330277.1	PFAM: Cupin 2, conserved barrel; KEGG: msm:MSMEG_0644 cupin domain-containing protein
YP_004330278.1	KEGG: amd:AMED_0129 hypothetical protein
YP_004330279.1	PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: mpa:MAP0889 hypothetical protein; SMART: DNA glycosylase/AP lyase, catalytic domain
YP_004330280.1	KEGG: sen:SACE_0115 sensor kinase, two-component system; PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004330281.1	PFAM: Peptidase S49; KEGG: amd:AMED_0132 serine protease
YP_004330282.1	KEGG: mil:ML5_6160 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain
YP_004330283.1	KEGG: rha:RHA1_ro05042 hypothetical protein
YP_004330284.1	PFAM: Sodium/solute symporter; KEGG: rop:ROP_51070  SSS family transporter
YP_004330285.1	PFAM: Sodium/solute symporter; KEGG: rha:RHA1_ro05043 sodium:solute symporter, SSF
YP_004330286.1	KEGG: nml:Namu_0213 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004330287.1	KEGG: ami:Amir_0075 hypothetical protein
YP_004330288.1	PFAM: FAD-binding 9, siderophore-interacting; SEC-C motif; KEGG: ami:Amir_0079 sec-C motif domain protein
YP_004330289.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tcu:Tcur_0098 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004330290.1	PFAM: Abortive infection protein; KEGG: sen:SACE_0132 abortive infection protein
YP_004330291.1	KEGG: sen:SACE_6354 hypothetical protein
YP_004330292.1	KEGG: gob:Gobs_3347 hypothetical protein
YP_004330293.1	KEGG: ami:Amir_0086 hypothetical protein
YP_004330294.1	KEGG: ami:Amir_0089 hypothetical protein
YP_004330295.1	KEGG: gob:Gobs_0268 prephenate dehydratase; PFAM: Prephenate dehydratase; Amino acid-binding ACT
YP_004330296.1	KEGG: sen:SACE_0153 2,3-PDG dependent phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004330297.1	PFAM: Protein of unknown function DUF1025; KEGG: ami:Amir_0112 protein of unknown function DUF1025
YP_004330298.1	KEGG: sen:SACE_0155  secreted protein
YP_004330299.1	KEGG: ami:Amir_0114 hypothetical protein
YP_004330300.1	KEGG: sen:SACE_0157 hypothetical protein; PFAM: Glutathionylspermidine synthase
YP_004330301.1	PFAM: Protein of unknown function DUF350; KEGG: ami:Amir_0116 protein of unknown function DUF350
YP_004330302.1	KEGG: msm:MSMEG_6407 Cof-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3
YP_004330303.1	KEGG: sen:SACE_0167 membrane-associated phospholipid phosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004330304.1	PFAM: UbiA prenyltransferase; KEGG: amd:AMED_0226 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
YP_004330305.1	TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: nml:Namu_4180 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase
YP_004330306.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: svi:Svir_06090 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004330307.1	PFAM: Methyltransferase type 12; KEGG: rer:RER_02530 hypothetical protein
YP_004330308.1	PFAM: Glycosyl transferase, family 2; KEGG: cmi:CMM_2310  glycosyl transferase
YP_004330309.1	KEGG: art:Arth_2682 hypothetical protein
YP_004330310.1	PFAM: Glycosyl transferase, family 2; KEGG: ske:Sked_08990  glycosyltransferase
YP_004330311.1	KEGG: cai:Caci_0997 hypothetical protein
YP_004330312.1	KEGG: amd:AMED_0223 hypothetical protein
YP_004330313.1	TIGRFAM: UDP-galactopyranose mutase; KEGG: svi:Svir_01310 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase, C-terminal; FAD dependent oxidoreductase
YP_004330314.1	KEGG: svi:Svir_28170 hypothetical protein
YP_004330315.1	KEGG: sen:SACE_5734 galactofuranosyl transferase
YP_004330316.1	KEGG: svi:Svir_01420 predicted glycosyltransferase
YP_004330317.1	PFAM: Mycobacterial cell wall arabinan synthesis protein; KEGG: sen:SACE_5736 arabinosyl transferase
YP_004330318.1	PFAM: Acyltransferase 3; KEGG: gob:Gobs_4357 acyltransferase 3
YP_004330320.1	PFAM: Nitroreductase-like; KEGG: gbr:Gbro_1352 nitroreductase
YP_004330321.1	KEGG: art:Arth_2686 hypothetical protein
YP_004330322.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: amd:AMED_0229 short-chain dehydrogenase
YP_004330323.1	PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase; KEGG: sen:SACE_0195 FAD linked oxidoreductase
YP_004330324.1	KEGG: fra:Francci3_0362 hypothetical protein
YP_004330325.1	PFAM: Protein of unknown function DUF1707; KEGG: sro:Sros_0038 hypothetical protein
YP_004330326.1	PFAM: ABC-2 type transporter; KEGG: ske:Sked_36170 multidrug ABC transporter permease
YP_004330327.1	PFAM: ABC transporter-like; KEGG: mil:ML5_0344 abc transporter related protein; SMART: ATPase, AAA+ type, core
YP_004330328.1	KEGG: amd:AMED_1510 MarR family transcriptional regulator
YP_004330329.1	KEGG: bcv:Bcav_4027 hypothetical protein
YP_004330330.1	KEGG: gob:Gobs_1678 ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004330331.1	KEGG: gob:Gobs_1989 hypothetical protein
YP_004330332.1	KEGG: gob:Gobs_1683 hypothetical protein
YP_004330333.1	PFAM: GtrA-like protein; KEGG: svi:Svir_01410 predicted membrane protein
YP_004330334.1	PFAM: Glycosyl transferase, family 2; KEGG: amd:AMED_0238 glycosyltransferase
YP_004330335.1	PFAM: ABC transporter-like; KEGG: sen:SACE_0200  ABC transport system, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004330336.1	PFAM: ABC-2 type transporter; KEGG: gob:Gobs_4323 ABC-2 type transporter
YP_004330337.1	PFAM: Protein of unknown function DUF2587; KEGG: ami:Amir_0135 hypothetical protein
YP_004330338.1	SMART: Polyketide synthase, enoylreductase; TIGRFAM: Quinone oxidoreductase , PIG3; KEGG: rop:ROP_39810  oxidoreductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004330339.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ami:Amir_0140 GCN5-related N-acetyltransferase
YP_004330340.1	PFAM: Uncharacterised protein family, zinc metallopeptidase KEGG: amd:AMED_0245 metallopeptidase
YP_004330341.1	KEGG: ami:Amir_0144 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004330342.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: fri:FraEuI1c_5356 alpha/beta hydrolase fold protein
YP_004330343.1	KEGG: azl:AZL_012780 flavin reductase; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004330344.1	TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; KEGG: gtn:GTNG_3160  aromatic compound hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase
YP_004330345.1	KEGG: amd:AMED_5706 2,3-dihydroxyphenylpropionate 1,2-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
YP_004330346.1	KEGG: swi:Swit_1555 hypothetical protein
YP_004330347.1	KEGG: cai:Caci_6492 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004330348.1	KEGG: sco:SCO3636 cytochrome P-450 hydroxylase; PFAM: Cytochrome P450
YP_004330349.1	KEGG: nml:Namu_4896 transcriptional regulator CdaR
YP_004330350.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fri:FraEuI1c_3930 regulatory protein TetR
YP_004330351.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: fri:FraEuI1c_3929 NAD-dependent epimerase/dehydratase
YP_004330352.1	KEGG: sna:Snas_2024 hypothetical protein
YP_004330353.1	PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: sen:SACE_2030  peptidyl-prolyl cis-trans isomerase
YP_004330354.1	KEGG: gob:Gobs_1121 hypothetical protein
YP_004330355.1	KEGG: rop:ROP_51490 hypothetical protein
YP_004330356.1	PFAM: Protein of unknown function DUF1905; KEGG: rha:RHA1_ro06736 hypothetical protein
YP_004330357.1	KEGG: sgr:SGR_3783  aminopeptidase 2; PFAM: Peptidase M18
YP_004330358.1	KEGG: gob:Gobs_4747 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_004330359.1	KEGG: svi:Svir_19990 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F
YP_004330360.1	KEGG: bge:BC1002_2527 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain
YP_004330361.1	KEGG: amd:AMED_9197  transglycosylase associated protein
YP_004330362.1	PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: svi:Svir_01830 aminotransferase
YP_004330363.1	PFAM: Dienelactone hydrolase; KEGG: sen:SACE_0218 carboxymethylenebutenolidase
YP_004330364.1	TIGRFAM: Acetoacetyl-CoA synthase; KEGG: msp:Mspyr1_32060 acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase
YP_004330365.1	KEGG: fre:Franean1_6636 NmrA family protein
YP_004330366.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_0878 transcriptional regulator
YP_004330367.1	PFAM: Cation/H+ exchanger; KEGG: rha:RHA1_ro03768 CPA1 family Na(+)/H(+) antiporter
YP_004330368.1	KEGG: cai:Caci_5138 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_004330369.1	KEGG: fal:FRAAL0869 hypothetical protein
YP_004330370.1	KEGG: nca:Noca_4890 hypothetical protein
YP_004330371.1	KEGG: cwo:Cwoe_3826 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Metal-dependent phosphohydrolase, HD subdomain; SMART: Transcription regulator LuxR, C-terminal
YP_004330372.1	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: mil:ML5_2012 extradiol ring-cleavage dioxygenase class III protein subunit B
YP_004330373.1	KEGG: gob:Gobs_0027 hypothetical protein
YP_004330374.1	PFAM: ABC transporter permease; KEGG: rer:RER_31070 iron-siderophore ABC transporter permease
YP_004330375.1	PFAM: ABC transporter permease; KEGG: sro:Sros_7986 ABC transporter, permease, Fe3+-siderophore transport system
YP_004330376.1	PFAM: Periplasmic binding protein; KEGG: msm:MSMEG_0020 periplasmic binding protein
YP_004330377.1	KEGG: msm:MSMEG_0022 L-ornithine 5-monooxygenase
YP_004330378.1	KEGG: req:REQ_07550 abc transporter integral membrane subunit; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004330379.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: req:REQ_07560 abc transporter integral membrane subunit; SMART: ATPase, AAA+ type, core
YP_004330380.1	SMART: Polyketide synthase, phosphopantetheine-binding; Polyketide synthase, thioesterase domain; TIGRFAM: Amino acid adenylation; Non-ribosomal peptide synthase; KEGG: msm:MSMEG_0019 amino acid adenylation; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Condensation domain; Thioesterase
YP_004330381.1	KEGG: kfl:Kfla_1528 monooxygenase FAD-binding protein; PFAM: Monooxygenase, FAD-binding
YP_004330382.1	KEGG: rha:RHA1_ro03513 hypothetical protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004330383.1	manually curated; TIGRFAM: RNA polymerase sigma-70, ECF type; RNA polymerase sigma-70; KEGG: rha:RHA1_ro03512 sigma factor, sigma 70 type, group 4; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004330384.1	KEGG: mkm:Mkms_5393 MOSC domain-containing protein; manually curated; PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel
YP_004330385.1	KEGG: sro:Sros_5246 hypothetical protein
YP_004330386.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: vei:Veis_0939 extracellular solute-binding protein
YP_004330387.1	KEGG: saq:Sare_2028 O-methyltransferase protein; PFAM: O-methyltransferase, family 2
YP_004330388.1	KEGG: bbr:BB1086  thiolase; PFAM: Thiolase, N-terminal
YP_004330389.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV_429 hypothetical protein
YP_004330390.1	KEGG: reu:Reut_A1827 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004330391.1	KEGG: rop:ROP_51360  IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004330392.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: nml:Namu_0793 xylose isomerase domain-containing protein
YP_004330393.1	KEGG: bcg:BCG9842_B2827  surface layer protein
YP_004330394.1	PFAM: YCII-related; KEGG: bph:Bphy_0288 YCII-related
YP_004330395.1	TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: avn:Avin_31500 flavin-dependent oxidoreductase
YP_004330396.1	KEGG: sen:SACE_2975 isoquinoline 1-oxidoreductase, beta subunit
YP_004330397.1	KEGG: sen:SACE_2974 isoquinoline 1-oxidoreductase, alpha subunit; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004330400.1	KEGG: gbr:Gbro_2781 hypothetical protein
YP_004330401.1	KEGG: sma:SAV_7098 hypothetical protein
YP_004330402.1	KEGG: fri:FraEuI1c_2884 aromatic-ring-hydroxylating dioxygenase beta subunit
YP_004330403.1	PFAM: Lactonase, 7-bladed beta propeller; KEGG: lxx:Lxx00940 secreted protein
YP_004330404.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bay:RBAM_029980 YusP
YP_004330405.1	KEGG: rop:ROP_49840  monooxygenase; PFAM: Monooxygenase, FAD-binding
YP_004330406.1	PFAM: Redoxin; KEGG: mmr:Mmar10_2222 redoxin domain-containing protein
YP_004330407.1	KEGG: nml:Namu_5171 alanine--tRNA ligase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal
YP_004330408.1	KEGG: rer:RER_32310 hypothetical protein
YP_004330409.1	PFAM:  esterase; KEGG: art:Arth_4531  esterase
YP_004330410.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amd:AMED_3391 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004330411.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: mva:Mvan_0766 pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_004330412.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: amd:AMED_0484 AraC family transcriptional regulator
YP_004330413.1	KEGG: kfl:Kfla_3032 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004330414.1	KEGG: mau:Micau_2727 hypothetical protein
YP_004330415.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rdn:HMPREF0733_10992 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004330416.1	KEGG: fra:Francci3_1236 hypothetical protein
YP_004330417.1	KEGG: tfu:Tfu_1507 methylated-DNA-(protein)-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Ada DNA repair, metal-binding
YP_004330418.1	KEGG: sen:SACE_3367 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004330419.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rha:RHA1_ro08833 epoxide hydrolase
YP_004330420.1	KEGG: nda:Ndas_2704 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330421.1	PFAM: Crotonase, core; KEGG: amd:AMED_5287 enoyl-CoA hydratase
YP_004330422.1	KEGG: lsp:Bsph_0910 hypothetical protein; PFAM: CoA-transferase III
YP_004330424.1	PFAM: Protein of unknown function DUF2086; KEGG: cak:Caul_4049 hypothetical protein
YP_004330425.1	KEGG: msm:MSMEG_3380 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; TIGRFAM: F420-binding domain, PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004330426.1	KEGG: dge:Dgeo_2171 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004330427.1	KEGG: rha:RHA1_ro08443 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004330428.1	KEGG: nar:Saro_0570 epoxide hydrolase domain-containing phosphatase; TIGRFAM: HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004330429.1	KEGG: mau:Micau_5172 DNA polymerase LigD polymerase subunit; TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit
YP_004330430.1	PFAM: Transposase, mutator type; KEGG: gob:Gobs_2905 transposase mutator type
YP_004330431.1	KEGG: esc:Entcl_2744 cell wall surface anchor family protein
YP_004330432.1	KEGG: sen:SACE_4673 hypothetical protein; PFAM: Aminotransferase class-III
YP_004330433.1	KEGG: sen:SACE_3049 aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004330434.1	PFAM: ABC-1; KEGG: nml:Namu_4857 ABC-1 domain-containing protein
YP_004330435.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: mil:ML5_1065 abc transporter transmembrane region; SMART: ATPase, AAA+ type, core
YP_004330436.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: mil:ML5_1066 abc transporter related protein; SMART: ATPase, AAA+ type, core
YP_004330437.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: kfl:Kfla_3613 transcriptional regulator, TetR family
YP_004330438.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS
YP_004330439.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kfl:Kfla_0703 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004330440.1	TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: kfl:Kfla_0717 hypothetical protein
YP_004330441.1	KEGG: amd:AMED_4171 hypothetical protein
YP_004330442.1	KEGG: amd:AMED_2410 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004330443.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: amd:AMED_2411 two-component system histidine kinase
YP_004330444.1	KEGG: amd:AMED_8940 hypothetical protein
YP_004330446.1	KEGG: sgr:SGR_303 hypothetical protein
YP_004330447.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Tetracycline transcriptional regulator, TetR, C-terminal; KEGG: bcv:Bcav_3884 transcriptional regulator, TetR family
YP_004330448.1	PFAM: ABC transporter-like; KEGG: aau:AAur_3041  ABC-type multidrug transport system, ATPase component; SMART: ATPase, AAA+ type, core
YP_004330449.1	PFAM: ABC-2 type transporter; KEGG: aau:AAur_3042  ABC-type multidrug transport system, permease component
YP_004330450.1	PFAM: Nucleoside phosphorylase domain; KEGG: fal:FRAAL4002  purine-nucleoside phosphorylase
YP_004330451.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ami:Amir_1766 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004330452.1	KEGG: tcu:Tcur_1808 cell envelope-related transcriptional attenuator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator
YP_004330453.1	TIGRFAM: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type; KEGG: cfl:Cfla_1902 Ku protein; SMART: DNA helicase, ATP-dependent, Ku type
YP_004330454.1	KEGG: cfl:Cfla_1903 DNA polymerase LigD, ligase domain protein; manually curated; PFAM: DNA ligase, ATP-dependent, central
YP_004330455.1	KEGG: amd:AMED_0309 hypothetical protein
YP_004330456.1	PFAM: Protein of unknown function DUF1089; KEGG: ami:Amir_0163 protein of unknown function DUF1089
YP_004330457.1	PFAM: Prephenate dehydrogenase; KEGG: ami:Amir_0168 prephenate dehydrogenase
YP_004330458.1	PFAM: Amidase; KEGG: nml:Namu_0017 amidase
YP_004330459.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: ami:Amir_0169 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004330460.1	KEGG: svi:Svir_36890 hypothetical protein
YP_004330461.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sen:SACE_0233 CMP/dCMP deaminase, zinc-binding
YP_004330462.1	PFAM: NUDIX hydrolase domain; KEGG: fre:Franean1_5579 NUDIX hydrolase
YP_004330463.1	PFAM: Small multidrug resistance protein; KEGG: tbi:Tbis_0442 small multidrug resistance protein
YP_004330464.1	KEGG: sgr:SGR_4166 hypothetical protein
YP_004330465.1	KEGG: sen:SACE_0625 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004330467.1	PFAM: Methyltransferase type 12; KEGG: rxy:Rxyl_3149 glycosyl transferase protein
YP_004330468.1	KEGG: fal:FRAAL0866 hypothetical protein
YP_004330469.1	PFAM: Amidohydrolase 1; KEGG: rha:RHA1_ro04297 dipeptidase
YP_004330470.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rha:RHA1_ro04298 hydrolase
YP_004330471.1	KEGG: bpt:Bpet4196 fumarylacetoacetate hydrolase protein; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004330472.1	KEGG: axy:AXYL_04513 GntR family regulatory protein 50; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004330473.1	KEGG: mau:Micau_2738 hypothetical protein
YP_004330474.1	SMART: ATPase, AAA+ type, core; manually curated; KEGG: sen:SACE_0251  DNA polymerase III gamma subunit; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core
YP_004330475.1	TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: rer:RER_45380 cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_004330476.1	PFAM: Bile acid:sodium symporter; KEGG: amd:AMED_6378 predicted Na+-dependent transporter
YP_004330477.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: scb:SCAB_16931 LysR family transcriptional regulator
YP_004330478.1	KEGG: amd:AMED_8913 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic
YP_004330479.1	TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: rop:ROP_41370 hypothetical protein; PFAM: Uncharacterised protein family UPF0133
YP_004330480.1	SMART: Toprim domain; TIGRFAM: RecR protein; KEGG: svi:Svir_36550 recombination protein RecR; HAMAP: RecR protein; PFAM: Toprim domain; Zinc finger C4-type, RecR
YP_004330483.1	KEGG: mil:ML5_0071 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004330484.1	PFAM: Domain of unknown function DUF397; KEGG: svi:Svir_12060 protein of unknown function (DUF397)
YP_004330485.1	KEGG: ami:Amir_0213 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: Yeast 2-isopropylmalate synthase; HAMAP: 2-isopropylmalate synthase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
YP_004330486.1	KEGG: amd:AMED_8885 hypothetical protein
YP_004330487.1	KEGG: ami:Amir_0216 hypothetical protein
YP_004330488.1	KEGG: nml:Namu_0694 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT
YP_004330489.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: sen:SACE_0283 aspartate-semialdehyde dehydrogenase, USG-1 related; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding
YP_004330490.1	KEGG: ami:Amir_0216 hypothetical protein
YP_004330491.1	KEGG: sen:SACE_0433 plant-type carbonic anhydrase; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase
YP_004330492.1	PFAM:  thiol-disulphide oxidoreductase DCC; KEGG: krh:KRH_04440 hypothetical protein
YP_004330493.1	KEGG: tkm:TK90_0559 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like
YP_004330494.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; Amino acid-binding ACT; KEGG: sma:SAV_7063 hypothetical protein
YP_004330496.1	KEGG: sen:SACE_0309 peptide hydrolase
YP_004330497.1	PFAM: Protein of unknown function DUF1707; KEGG: gob:Gobs_0130 hypothetical protein
YP_004330498.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mil:ML5_3711 regulatory protein TetR
YP_004330499.1	PFAM: Cupin 2, conserved barrel; KEGG: mil:ML5_3712 cupin 2 conserved barrel domain protein
YP_004330500.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_1492  transcriptional regulator, TetR family
YP_004330501.1	KEGG: mau:Micau_0584 sigma-70 family RNA polymerase; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004330502.1	PFAM: YCII-related; KEGG: mil:ML5_0780 YCII-related protein
YP_004330503.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: reu:Reut_A0240 bifunctional deaminase-reductase, C-terminal
YP_004330505.1	PFAM: ATP-grasp fold, RimK-type; KEGG: hau:Haur_5021 RimK domain-containing protein ATP-grasp
YP_004330509.1	manually curated; TIGRFAM: Protein of unknown function DUF124; KEGG: azc:AZC_0415 hypothetical protein; PFAM: Protein of unknown function DUF124
YP_004330510.1	KEGG: gsu:GSU0248 BchE/P-methylase protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB
YP_004330511.1	PFAM: ThiJ/PfpI; KEGG: mmi:MMAR_0071 transcriptional regulatory protein
YP_004330512.1	KEGG: mjl:Mjls_0741 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004330513.1	KEGG: fal:FRAAL0556  carboxylesterase; PFAM: Carboxylesterase, type B
YP_004330514.1	KEGG: htu:Htur_4265 hypothetical protein
YP_004330515.1	KEGG: sti:Sthe_2946 hypothetical protein
YP_004330516.1	PFAM: Metallo-dependent phosphatase; KEGG: ami:Amir_0233 metallophosphoesterase
YP_004330517.1	KEGG: sen:SACE_0312 GatB/YqeY
YP_004330518.1	SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: rha:RHA1_ro04353 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain
YP_004330519.1	KEGG: sen:SACE_0376 hypothetical protein
YP_004330520.1	KEGG: ami:Amir_0285 hypothetical protein
YP_004330521.1	KEGG: ami:Amir_0285 hypothetical protein
YP_004330522.1	PFAM: Pyrophosphate-energised proton pump; TIGRFAM: Pyrophosphate-energised proton pump; HAMAP: Pyrophosphate-energised proton pump; KEGG: ami:Amir_0284 membrane-bound proton-translocating pyrophosphatase
YP_004330523.1	TIGRFAM: DEAD/DEAH-box helicase, PFAM: Protein of unknown function DUF1998; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: svi:Svir_35840 helicase protein with metal-binding cysteine cluster; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004330524.1	TIGRFAM: Helicase/secretion neighbourhood TadE-like protein; KEGG: mab:MAB_0475 hypothetical protein
YP_004330525.1	KEGG: rha:RHA1_ro04343 hypothetical protein
YP_004330526.1	PFAM: Type II secretion system F domain; KEGG: rop:ROP_42520 hypothetical membrane protein
YP_004330527.1	PFAM: Type II secretion system F domain; KEGG: ami:Amir_0277 type II secretion system protein
YP_004330528.1	KEGG: nfa:nfa3590 hypothetical protein; TIGRFAM: Helicase/secretion neighbourhood ATPase; PFAM: Type II secretion system protein E
YP_004330529.1	TIGRFAM: Conserved hypothetical protein CHP03815, CpaE-like; KEGG: ami:Amir_0275 hypothetical protein
YP_004330530.1	manually curated; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: sen:SACE_0365 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase
YP_004330531.1	KEGG: rha:RHA1_ro04337 hypothetical protein
YP_004330532.1	PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate-CoA ligase; HAMAP: Acetate-CoA ligase; KEGG: ami:Amir_0262 acetyl-CoA synthetase
YP_004330533.1	PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: fri:FraEuI1c_3893 peptidase S1 and S6 chymotrypsin/Hap
YP_004330534.1	PFAM: ATPase, AAA-3; KEGG: fri:FraEuI1c_3894 ATPase associated with various cellular activities AAA_3
YP_004330535.1	KEGG: pol:Bpro_3892 hypothetical protein; PFAM: Domain of unknown function DUF58; SMART: von Willebrand factor, type A
YP_004330536.1	KEGG: azo:azo2860 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004330537.1	KEGG: fri:FraEuI1c_3897 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004330538.1	PFAM: Peptide chain release factor class I/class II; KEGG: amd:AMED_9033 peptide chain release factor class I
YP_004330539.1	TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: amd:AMED_8822 Na+:H+ antiporter, NhaA family; PFAM: Na+/H+ antiporter NhaA
YP_004330540.1	KEGG: req:REQ_05220 integral membrane protein
YP_004330541.1	KEGG: ami:Amir_0259 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1
YP_004330542.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: svi:Svir_38180 glycerophosphoryl diester phosphodiesterase
YP_004330543.1	PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: amd:AMED_9086 phosphoribosylamine--glycine ligase
YP_004330544.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nfa:nfa21520  transcriptional regulator
YP_004330545.1	KEGG: mva:Mvan_5290 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004330546.1	PFAM: Ion transport 2; KEGG: ach:Achl_2774 ion transport 2 domain protein
YP_004330547.1	KEGG: ami:Amir_6894 aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_004330548.1	KEGG: ami:Amir_6893 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-E type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004330549.1	KEGG: sen:SACE_7160 hypothetical protein
YP_004330550.1	TIGRFAM: Adenylosuccinate lyase; KEGG: sma:SAV_7077 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi
YP_004330551.1	PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: SAICAR synthetase; KEGG: sna:Snas_4833 phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_004330552.1	KEGG: rop:ROP_49090 hypothetical protein
YP_004330553.1	KEGG: sen:SACE_7147 beta-lactamase-like protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004330554.1	manually curated; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; KEGG: svi:Svir_38000 phosphoribosylformylglycinamidine synthase, PurS protein; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit
YP_004330555.1	PFAM: CobB/CobQ-like glutamine amidotransferase; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; HAMAP: Phosphoribosylformylglycinamidine synthase I; KEGG: tpr:Tpau_3613 phosphoribosylformylglycinamidine synthase I
YP_004330556.1	KEGG: mil:ML5_2885 response regulator receiver modulated serine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; Protein phosphatase 2C-like
YP_004330557.1	KEGG: cwo:Cwoe_5360 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; CHASE3; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004330558.1	KEGG: tcu:Tcur_1124 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004330559.1	PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; HAMAP: Phosphoribosylformylglycinamidine synthase II; KEGG: sen:SACE_7142 phosphoribosylformylglycinamidine synthase II
YP_004330560.1	KEGG: saq:Sare_0162 hypothetical protein
YP_004330561.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-3; KEGG: ami:Amir_6871 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS
YP_004330562.1	TIGRFAM: Amidophosphoribosyl transferase; KEGG: sen:SACE_7125 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase
YP_004330563.1	TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: sen:SACE_7124 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein
YP_004330564.1	PFAM: NUDIX hydrolase domain; KEGG: sna:Snas_0306 NUDIX hydrolase
YP_004330565.1	KEGG: gob:Gobs_1106 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004330566.1	KEGG: sgr:SGR_2260 hypothetical protein
YP_004330567.1	KEGG: car:cauri_2161 hypothetical protein
YP_004330568.1	KEGG: ami:Amir_6841 hypothetical protein
YP_004330569.1	KEGG: ami:Amir_6837 folate-binding protein YgfZ; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_004330570.1	PFAM: Ferric-uptake regulator; KEGG: ami:Amir_6836 ferric uptake regulator, Fur family
YP_004330571.1	KEGG: lbz:LbrM34_V2.0530 proteophosphoglycan ppg4
YP_004330572.1	KEGG: cbr:CBG02561 Hypothetical protein CBG02561
YP_004330573.1	KEGG: ami:Amir_6831 hypothetical protein; HAMAP: Uncharacterised protein family UPF0678; PFAM: Domain of unknown function DUF1794
YP_004330575.1	PFAM: Protein of unknown function DUF1416; KEGG: nfa:nfa5930 hypothetical protein
YP_004330576.1	PFAM: Rhodanese-like; KEGG: ami:Amir_6828 rhodanese domain protein; SMART: Rhodanese-like
YP_004330577.1	KEGG: svi:Svir_37700 hypothetical protein
YP_004330578.1	KEGG: amd:AMED_9010 thioredoxin
YP_004330579.1	KEGG: ami:Amir_6825 hypothetical protein
YP_004330580.1	KEGG: ami:Amir_6823  two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal
YP_004330581.1	KEGG: mil:ML5_2774 mycothiol biosynthesis acetyltransferase; TIGRFAM: Mycothiol biosynthesis protein, MshD; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004330582.1	KEGG: ami:Amir_6821 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_004330583.1	KEGG: ami:Amir_6820 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004330584.1	KEGG: ami:Amir_6819 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004330585.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease 1; KEGG: msp:Mspyr1_10410 phosphate ABC transporter ATP-binding protein, PhoT family; PFAM: ABC transporter-like
YP_004330586.1	KEGG: amd:AMED_9002 phosphate transport system protein; TIGRFAM: PhoU; PFAM: PhoU
YP_004330587.1	PFAM: Dodecin flavoprotein; KEGG: scb:SCAB_11251 hypothetical protein
YP_004330588.1	KEGG: amd:AMED_9002 phosphate transport system protein; TIGRFAM: PhoU; PFAM: PhoU
YP_004330589.1	KEGG: sen:SACE_7090 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator
YP_004330590.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sen:SACE_7088 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_004330591.1	KEGG: sen:SACE_7086 dihydrouridine synthase TIM-barrel protein nifR3; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase
YP_004330592.1	KEGG: svi:Svir_37580 hypothetical protein
YP_004330593.1	KEGG: tfu:Tfu_1551 hypothetical protein
YP_004330595.1	PFAM: Endoribonuclease L-PSP; KEGG: lhk:LHK_01898 endoribonuclease L-PSP
YP_004330596.1	KEGG: sen:SACE_0961 suppressor protein DnaK
YP_004330597.1	manually curated; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: sgr:SGR_2706 transcriptional regulator; SMART: HTH transcriptional regulator, GntR
YP_004330598.1	PFAM: Major facilitator superfamily MFS-1; KEGG: pol:Bpro_4134 major facilitator transporter
YP_004330599.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: msm:MSMEG_4136 dTDP-glucose 4,6-dehydratase
YP_004330600.1	PFAM: General substrate transporter; KEGG: rha:RHA1_ro06087 major facilitator transporter
YP_004330601.1	PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: amd:AMED_0557 integral membrane protein
YP_004330602.1	KEGG: mjl:Mjls_3508 hypothetical protein
YP_004330603.1	PFAM: Abortive infection protein; KEGG: xce:Xcel_2718 abortive infection protein
YP_004330604.1	KEGG: req:REQ_44380 hypothetical protein
YP_004330605.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_3546 hypothetical protein
YP_004330607.1	KEGG: nda:Ndas_5034 cyclohexanone monooxygenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004330608.1	KEGG: pol:Bpro_5566 alpha/beta hydrolase fold-3
YP_004330609.1	PFAM: Helix-turn-helix, Fis-type; RNA polymerase sigma factor 54, interaction; KEGG: rha:RHA1_ro00452 transcriptional regulator
YP_004330610.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: cwo:Cwoe_1096 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase
YP_004330611.1	PFAM: Cytochrome P450; KEGG: amd:AMED_4704 cytochrome P450
YP_004330612.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_3550  transcriptional regulator, TetR family
YP_004330613.1	KEGG: ttr:Tter_1915 hypothetical protein
YP_004330614.1	KEGG: rsa:RSal33209_1050 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004330615.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: amd:AMED_1482  transposase
YP_004330616.1	KEGG: nca:Noca_4137 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330617.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nca:Noca_4120 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004330618.1	KEGG: nca:Noca_4119 hypothetical protein
YP_004330619.1	PFAM: Biotin/lipoyl attachment; KEGG: fre:Franean1_0965 biotin/lipoyl attachment domain-containing protein
YP_004330620.1	PFAM: Crotonase, core; KEGG: nca:Noca_4110 short chain enoyl-CoA hydratase
YP_004330621.1	PFAM: MaoC-like dehydratase; KEGG: nca:Noca_4135 dehydratase
YP_004330622.1	PFAM: Aminoglycoside phosphotransferase; KEGG: nca:Noca_4129 aminoglycoside phosphotransferase
YP_004330623.1	KEGG: ade:Adeh_3688 response regulator receiver domain-containing protein
YP_004330624.1	KEGG: gob:Gobs_3775 TetR family transcriptional regulator; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_004330625.1	PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: nca:Noca_4118 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain
YP_004330626.1	PFAM: Extracellular ligand-binding receptor; KEGG: nca:Noca_4117 extracellular ligand-binding receptor
YP_004330627.1	KEGG: nca:Noca_4116 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330628.1	PFAM: ABC transporter permease; KEGG: nca:Noca_4115 inner-membrane translocator
YP_004330629.1	PFAM: ABC transporter permease; KEGG: nca:Noca_4114 inner-membrane translocator
YP_004330630.1	PFAM: ABC transporter-like; KEGG: nca:Noca_4113 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004330631.1	KEGG: nca:Noca_4112 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004330632.1	manually curated; KEGG: ami:Amir_5665 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004330633.1	PFAM: Crotonase, core; KEGG: nca:Noca_4107 enoyl-CoA hydratase
YP_004330634.1	KEGG: ace:Acel_0874 propionyl-CoA carboxylase; PFAM: Carboxyl transferase
YP_004330635.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nca:Noca_4111 regulatory protein, TetR
YP_004330636.1	PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: nca:Noca_4134 acyl-CoA dehydrogenase domain-containing protein
YP_004330637.1	KEGG: nca:Noca_4133 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004330638.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: nca:Noca_4132 hypothetical protein
YP_004330639.1	KEGG: nca:Noca_4131  lipid-transfer protein
YP_004330640.1	KEGG: nca:Noca_4130 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004330641.1	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: fri:FraEuI1c_5059 acyl-CoA dehydrogenase domain-containing protein
YP_004330642.1	KEGG: scb:SCAB_6041 SecDF protein-export membrane protein; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; SecF protein; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal
YP_004330644.1	KEGG: acd:AOLE_11755 hypothetical protein
YP_004330645.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: nca:Noca_4462 deaminase-reductase domain-containing protein
YP_004330647.1	KEGG: amd:AMED_5389 hypothetical protein
YP_004330648.1	KEGG: pmb:A9601_05461 G3E family GTPase
YP_004330649.1	PFAM: Cation efflux protein; KEGG: mil:ML5_5458 cation efflux protein
YP_004330650.1	KEGG: stp:Strop_1675 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004330651.1	PFAM: Alanine racemase, N-terminal; KEGG: aau:AAur_0212 alanine racemase N-terminal domain-containing protein
YP_004330652.1	PFAM: Uncharacterised protein family UPF0272; KEGG: fri:FraEuI1c_0110 protein of unknown function DUF111
YP_004330653.1	KEGG: mxa:MXAN_4234 hypothetical protein
YP_004330654.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: apb:SAR116_0795 short-chain dehydrogenase/reductase SDR
YP_004330655.1	PFAM: Dihydroorotate dehydrogenase, class 1/ 2; TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase, class 2; KEGG: tfu:Tfu_0927 dihydroorotate dehydrogenase 2
YP_004330656.1	KEGG: tfu:Tfu_1642 RNA-binding S4; PFAM: RNA-binding S4; SMART: RNA-binding S4
YP_004330657.1	KEGG: rha:RHA1_ro01770 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004330658.1	KEGG: aac:Aaci_0812 ethyl tert-butyl ether degradation EthD; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD
YP_004330659.1	KEGG: sen:SACE_3387 bile acid-coenzyme A ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330660.1	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: reu:Reut_B4781 dimethylmenaquinone methyltransferase
YP_004330661.1	TIGRFAM: Glycoside hydrolase, family 77; KEGG: mgi:Mflv_0996 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77
YP_004330662.1	PFAM: Collagen-binding surface protein Cna-like, B-type domain; KEGG: lma:LmjF35.0540 proteophosphoglycan 5
YP_004330663.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: req:REQ_42200 alpha/beta hydrolase
YP_004330664.1	PFAM: Acetoacetate decarboxylase; KEGG: sro:Sros_1360 hypothetical protein
YP_004330665.1	TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; ATPase-like, ATP-binding domain; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: Protein phosphatase 2C-like; Signal transduction response regulator, receiver domain; PAC motif; GAF
YP_004330666.1	PFAM: Cysteine dioxygenase type I; KEGG: nda:Ndas_1387 cysteine dioxygenase type I
YP_004330667.1	SMART: Rhodanese-like; KEGG: gob:Gobs_4874 rhodanese domain-containing protein
YP_004330668.1	KEGG: gob:Gobs_2382 glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004330669.1	KEGG: cai:Caci_7507 protein of unknown function DUF1275; manually curated; PFAM: Protein of unknown function DUF1275
YP_004330670.1	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; KEGG: svi:Svir_13420 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal
YP_004330671.1	KEGG: gob:Gobs_2136 hypothetical protein
YP_004330672.1	KEGG: ago:AGOS_ACL074W hypothetical protein
YP_004330673.1	PFAM: Beta-lactamase-related; KEGG: amd:AMED_2723 beta-lactamase class C
YP_004330674.1	PFAM: Protein of unknown function DUF72; KEGG: sen:SACE_3121 hypothetical protein
YP_004330675.1	PFAM: Major facilitator superfamily MFS-1; KEGG: mau:Micau_0410 major facilitator superfamily protein
YP_004330676.1	KEGG: rha:RHA1_ro10402 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330677.1	KEGG: nda:Ndas_0433 protein of unknown function DUF1271
YP_004330679.1	KEGG: nml:Namu_2393 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330680.1	PFAM: Lipase, GDSL; KEGG: bxe:Bxe_A0297 lipase/acylhydrolase
YP_004330681.1	KEGG: svi:Svir_37150 hypothetical protein
YP_004330682.1	PFAM: Heavy metal transport/detoxification protein; KEGG: gbr:Gbro_4238 heavy metal transport/detoxification protein
YP_004330683.1	PFAM: Protein of unknown function DUF156; KEGG: amd:AMED_6896 hypothetical protein
YP_004330684.1	KEGG: ami:Amir_6795 hypothetical protein
YP_004330685.1	PFAM: Monooxygenase, FAD-binding; KEGG: amd:AMED_4676 FAD-dependent oxidoreductase
YP_004330686.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_4675 TetR family transcriptional regulator
YP_004330687.1	KEGG: cai:Caci_0444 ricin B lectin
YP_004330688.1	PFAM: Polysaccharide deacetylase; Glycosyl transferase, family 2; KEGG: sco:SCO4554 bi-functional transferase/deacetylase
YP_004330689.1	KEGG: scb:SCAB_55801 hypothetical protein
YP_004330690.1	KEGG: sna:Snas_4397 hydrolase transmembrane protein
YP_004330691.1	PFAM: Polysaccharide deacetylase; Glycosyl transferase, family 2; KEGG: svi:Svir_26930 glycosyl transferase
YP_004330692.1	KEGG: vcn:VOLCADRAFT_104860 hypothetical protein
YP_004330693.1	KEGG: cai:Caci_0444 ricin B lectin
YP_004330694.1	KEGG: sen:SACE_1607 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004330695.1	PFAM: Cupin 2, conserved barrel; KEGG: sro:Sros_8205 hypothetical protein
YP_004330696.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nml:Namu_2350 TetR family transcriptional regulator
YP_004330697.1	KEGG: bmj:BMULJ_03470 highly repetitive protein
YP_004330698.1	KEGG: tcu:Tcur_2880 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004330699.1	KEGG: amd:AMED_8800 hypothetical protein
YP_004330700.1	PFAM: Protein of unknown function DUF445, transmembrane; KEGG: ami:Amir_6776 protein of unknown function DUF445
YP_004330701.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: amd:AMED_5929 ATPase component of ABC-type multidrug transport system; PFAM: ABC transporter-like
YP_004330702.1	PFAM: ABC-2 type transporter; KEGG: amd:AMED_5930 ABC-2 type transporter
YP_004330703.1	TIGRFAM: Camphor resistance CrcB protein; HAMAP: Camphor resistance CrcB protein; KEGG: scb:SCAB_83531 integral membrane protein; PFAM: Camphor resistance CrcB protein
YP_004330704.1	TIGRFAM: Camphor resistance CrcB protein; HAMAP: Camphor resistance CrcB protein; KEGG: fri:FraEuI1c_4222 CrcB protein; PFAM: Camphor resistance CrcB protein
YP_004330705.1	KEGG: sen:SACE_6990 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004330706.1	KEGG: amd:AMED_0427 membrane spanning protein
YP_004330707.1	PFAM: Protein of unknown function DUF2516; KEGG: sen:SACE_6988 hypothetical protein
YP_004330708.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: ami:Amir_6768 YbaK/prolyl-tRNA synthetase associated region
YP_004330709.1	SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: mau:Micau_3432 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; ATPase, AAA-type, core; Peptidase S16, lon N-terminal
YP_004330710.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: amd:AMED_0445 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_004330711.1	PFAM: Major facilitator superfamily MFS-1; KEGG: dat:HRM2_33900  permease of the major facilitator superfamily
YP_004330712.1	PFAM: Protein of unknown function DUF2505; KEGG: sen:SACE_6979 hypothetical protein
YP_004330713.1	KEGG: ami:Amir_6761 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal
YP_004330714.1	PFAM: YkuD domain; KEGG: nfa:nfa51960 hypothetical protein
YP_004330715.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: ach:Achl_2099 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase
YP_004330716.1	KEGG: ami:Amir_6759 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004330717.1	PFAM: Protein of unknown function DUF2530; KEGG: ami:Amir_0487 hypothetical protein
YP_004330718.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: amd:AMED_8482  MFS transporter, xanthine/uracil permease
YP_004330719.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ami:Amir_0490 major facilitator superfamily MFS_1
YP_004330720.1	KEGG: kfl:Kfla_2555 hypothetical protein
YP_004330721.1	KEGG: ade:Adeh_0244 LigA
YP_004330722.1	KEGG: amd:AMED_8474 hypothetical protein
YP_004330723.1	KEGG: amd:AMED_8472 hypothetical protein
YP_004330724.1	KEGG: sen:SACE_0629 hypothetical protein
YP_004330725.1	PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase, Mycobacterial-type; HAMAP: Phosphoserine aminotransferase; KEGG: msp:Mspyr1_11040 phosphoserine aminotransferase
YP_004330726.1	KEGG: amd:AMED_8451 citrate synthase; PFAM: Citrate synthase-like
YP_004330727.1	PFAM: Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: amd:AMED_8441 pyridoxamine 5'-phosphate oxidase
YP_004330728.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_0642 major facilitator superfamily multidrug resistance protein
YP_004330729.1	TIGRFAM: Citrate synthase, type II; KEGG: svi:Svir_33600 citrate synthase; PFAM: Citrate synthase-like
YP_004330730.1	KEGG: rer:RER_45790 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal
YP_004330731.1	KEGG: mgm:Mmc1_2162 TPR repeat-containing protein
YP_004330732.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sgr:SGR_3980 TetR family transcriptional regulator
YP_004330733.1	KEGG: cai:Caci_5384 monooxygenase FAD-binding; PFAM: Monooxygenase, FAD-binding
YP_004330734.1	KEGG: ami:Amir_0532 ABC-type Na+ efflux pump permease component
YP_004330735.1	PFAM: ABC transporter-like; KEGG: amd:AMED_2105 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004330736.1	KEGG: tfu:Tfu_1277 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004330737.1	KEGG: has:Halsa_0700 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004330738.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: pol:Bpro_1857 3-oxoadipate enol-lactonase
YP_004330739.1	KEGG: rop:ROP_29740  fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330740.1	PFAM: Luciferase-like, subgroup; KEGG: bts:Btus_1633 luciferase-like, subgroup
YP_004330741.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: hje:HacjB3_10950 hypothetical protein
YP_004330742.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: amd:AMED_3868 hypothetical protein
YP_004330743.1	KEGG: bts:Btus_1262 thiolase
YP_004330744.1	PFAM: Helix-turn-helix, Fis-type; GAF; KEGG: amd:AMED_4322 Fis family transcriptional regulator
YP_004330745.1	KEGG: amd:AMED_4324 methane monooxygenase; PFAM: Methane/phenol/toluene hydroxylase
YP_004330746.1	KEGG: amd:AMED_4325 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding
YP_004330747.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: amd:AMED_4326 methane/phenol/toluene hydroxylase
YP_004330748.1	PFAM: Monooxygenase component MmoB/DmpM; KEGG: amd:AMED_4327 monooxygenase component MmoB/DmpM
YP_004330749.1	KEGG: amd:AMED_4331 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1
YP_004330750.1	PFAM: Amidohydrolase 2; KEGG: sen:SACE_6395 amidohydrolase 2
YP_004330751.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sna:Snas_0952 general substrate transporter
YP_004330752.1	KEGG: ami:Amir_0553 AIG2 family protein
YP_004330753.1	TIGRFAM:  translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; KEGG: cai:Caci_3517 translation initiation factor, aIF-2BI family; PFAM: Initiation factor 2B-related
YP_004330754.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nda:Ndas_0293 major facilitator superfamily MFS_1
YP_004330756.1	KEGG: svi:Svir_18790 Zn-dependent hydrolase, glyoxylase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004330757.1	SMART: Polyketide synthase, enoylreductase; TIGRFAM: Formaldehyde dehydrogenase, mycothiol-dependent; KEGG: mil:ML5_5136 mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004330758.1	PFAM: Crotonase, core; KEGG: rha:RHA1_ro10427 enoyl-CoA hydratase
YP_004330759.1	KEGG: nda:Ndas_1870 fumarylacetoacetase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004330760.1	PFAM: Thioesterase superfamily; KEGG: mjl:Mjls_2763 thioesterase superfamily protein
YP_004330761.1	PFAM: Cupin 2, conserved barrel; KEGG: kfl:Kfla_0197 cupin 2 conserved barrel domain protein
YP_004330763.1	KEGG: tcu:Tcur_1157 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004330764.1	TIGRFAM: Thiolase; KEGG: nca:Noca_4563 acetyl-CoA acetyltransferases; PFAM: Thiolase, C-terminal; Thiolase, N-terminal
YP_004330765.1	KEGG: sma:SAV_1680 fatty acid oxidation complex alpha-subunit; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_004330766.1	TIGRFAM: Carboxylate-amine ligase, predicted; HAMAP: Carboxylate-amine ligase, predicted; KEGG: sgr:SGR_459 carboxylate-amine ligase; PFAM: Glutamate--cysteine ligase, GCS2
YP_004330767.1	KEGG: sen:SACE_1903 response regulator receiver/ANTAR domain-containing protein; PFAM: ANTAR; SMART: GAF
YP_004330768.1	KEGG: amd:AMED_1255 hypothetical protein
YP_004330769.1	KEGG: gob:Gobs_0179 stress responsive alpha-beta barrel domain-containing protein; PFAM: Stress responsive alpha-beta barrel; SMART: Stress responsive alpha-beta barrel
YP_004330770.1	KEGG: ami:Amir_2133 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004330771.1	KEGG: ami:Amir_2134 hypothetical protein
YP_004330772.1	KEGG: amd:AMED_6611 hypothetical protein
YP_004330773.1	PFAM: Protein of unknown function DUF318, transmembrane; KEGG: sen:SACE_1496 permease
YP_004330774.1	KEGG: tfu:Tfu_1924 hypothetical protein
YP_004330775.1	KEGG: sro:Sros_0898 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_004330776.1	PFAM: Anti-sigma K factor RskA; KEGG: ace:Acel_0058  transmembrane anti-sigma factor
YP_004330777.1	KEGG: nfa:nfa11970  dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_004330778.1	KEGG: nml:Namu_4774 hypothetical protein
YP_004330779.1	PFAM: General substrate transporter; KEGG: rxy:Rxyl_1587 major facilitator transporter
YP_004330780.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atu:Atu1400 phosphoglycerate dehydrogenase
YP_004330781.1	KEGG: bmj:BMULJ_05466 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type
YP_004330782.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: mlo:mll7085 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004330783.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_6318 LysR family transcriptional regulator
YP_004330784.1	KEGG: nml:Namu_3919 hypothetical protein
YP_004330785.1	PFAM: Drug/metabolite transporter; KEGG: nml:Namu_5292 hypothetical protein
YP_004330786.1	PFAM: Drug/metabolite transporter; KEGG: rer:RER_47080 hypothetical protein
YP_004330787.1	PFAM: Uncharacterised protein family UPF0066; KEGG: amd:AMED_7744 hypothetical protein
YP_004330788.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH02714  glyoxalase/bleomycin resistance-like protein
YP_004330790.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; GAF; KEGG: azo:azo2612 GAF/GGDEF-domain-containing protein; SMART: Diguanylate cyclase, predicted; GAF
YP_004330791.1	PFAM: Helix-turn-helix, HxlR type; KEGG: nfa:nfa24980  transcriptional regulator
YP_004330792.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA dehydrogenase, N-terminal; KEGG: pzu:PHZ_c3106 acyl-CoA dehydrogenase
YP_004330793.1	PFAM: Protein of unknown function DUF664; KEGG: kfl:Kfla_2986 protein of unknown function DUF664
YP_004330794.1	KEGG: mav:MAV_0775 zinc transporter Slc39a7
YP_004330795.1	KEGG: mau:Micau_2627 hypothetical protein
YP_004330796.1	PFAM: Helix-turn-helix, HxlR type; KEGG: rha:RHA1_ro01404 hypothetical protein
YP_004330797.1	KEGG: fal:FRAAL2803 hypothetical protein; PFAM: Carbonic anhydrase; SMART: Carbonic anhydrase
YP_004330798.1	PFAM: ABC transporter permease; KEGG: nca:Noca_0101 inner-membrane translocator
YP_004330799.1	KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like
YP_004330800.1	KEGG: amd:AMED_0066 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004330801.1	PFAM: ABC transporter-like; KEGG: fri:FraEuI1c_5697 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004330802.1	KEGG: ctc:CTC01781 phenylhydantoinase; PFAM: Amidohydrolase 1
YP_004330803.1	PFAM: Asparaginase/glutaminase; KEGG: rxy:Rxyl_2741 asparaginase; SMART: Asparaginase/glutaminase
YP_004330804.1	KEGG: mil:ML5_3221 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004330805.1	PFAM: Major facilitator superfamily MFS-1; KEGG: msm:MSMEG_2810 major facilitator superfamily protein
YP_004330806.1	PFAM: Peptidase M23; KEGG: scb:SCAB_47131 peptidase
YP_004330807.1	PFAM: Protein of unknown function DUF1707; KEGG: mtb:TBMG_01108 hypothetical protein
YP_004330810.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_1985 transcriptional regulator, LysR family protein
YP_004330811.1	TIGRFAM: Tartrate dehydrogenase; KEGG: msm:MSMEG_1986 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004330812.1	KEGG: vcn:VOLCADRAFT_89522 hypothetical protein
YP_004330813.1	KEGG: pmx:PERMA_1659 flavin reductase domain protein, FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004330814.1	PFAM: YCII-related; KEGG: cai:Caci_4747 YCII-related protein
YP_004330815.1	KEGG: cai:Caci_4746  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004330816.1	KEGG: rxy:Rxyl_2946 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004330817.1	manually curated; KEGG: amd:AMED_5441 FAD-dependent oxidoreductase; PFAM: Monooxygenase, FAD-binding
YP_004330818.1	PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: scb:SCAB_61641 adenosine/AMP deaminase
YP_004330819.1	PFAM: Membrane transport protein, MMPL type; KEGG: svi:Svir_37330 predicted RND superfamily drug exporter
YP_004330820.1	KEGG: mil:ML5_0800 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; GAF; SMART: Protein phosphatase 2C-like
YP_004330821.1	PFAM: UspA; KEGG: req:REQ_23940 universal stress family protein
YP_004330822.1	KEGG: gob:Gobs_1336 hypothetical protein
YP_004330823.1	PFAM: UspA; KEGG: cef:CE2791 hypothetical protein
YP_004330824.1	KEGG: sen:SACE_2402 signal-transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004330825.1	PFAM: UspA; KEGG: sro:Sros_5439 universal stress protein UspA and related nucleotide-binding protein-like protein
YP_004330826.1	PFAM: Flavodoxin/nitric oxide synthase; KEGG: fra:Francci3_1002 hypothetical protein
YP_004330827.1	KEGG: sma:SAV_1301 hypothetical protein
YP_004330828.1	KEGG: ami:Amir_1917 nitroreductase
YP_004330829.1	PFAM: UspA; KEGG: amd:AMED_5483 universal stress protein
YP_004330830.1	KEGG: ami:Amir_1906 nitroreductase
YP_004330831.1	KEGG: ami:Amir_1907 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; GAF; SMART: GAF; ATPase-like, ATP-binding domain
YP_004330832.1	PFAM: UspA; KEGG: sen:SACE_2425 universal stress protein
YP_004330833.1	PFAM: UspA; KEGG: sro:Sros_3526 hypothetical protein
YP_004330834.1	KEGG: ami:Amir_6098 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004330835.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fri:FraEuI1c_4013 regulatory protein TetR
YP_004330836.1	TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: fri:FraEuI1c_4014 protein of unknown function DUF1503
YP_004330837.1	KEGG: sen:SACE_6553 hypothetical protein
YP_004330838.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: amd:AMED_1631 purine nucleosidase
YP_004330839.1	KEGG: rop:ROP_47630  acid phosphatase
YP_004330840.1	KEGG: svi:Svir_26230 hypothetical protein; manually curated; PFAM: Sulphatase-modifying factor
YP_004330841.1	PFAM: Sulfatase; KEGG: rop:ROP_36660  arylsulfatase
YP_004330842.1	KEGG: gob:Gobs_3031 diacylglycerol kinase catalytic subunit; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain
YP_004330843.1	KEGG: xau:Xaut_2680 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004330844.1	KEGG: pla:Plav_2689 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_004330845.1	KEGG: xau:Xaut_2682 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1
YP_004330846.1	KEGG: msm:MSMEG_3730 helix-turn-helix, fis-type, PFAM: LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain
YP_004330847.1	PFAM: Haem peroxidase, plant/fungal/bacterial; TIGRFAM: Catalase-peroxidase haem; HAMAP: Catalase-peroxidase haem; KEGG: fre:Franean1_1533 catalase/peroxidase HPI
YP_004330848.1	PFAM: Multicopper oxidase, type 3; KEGG: msm:MSMEG_3727 hypothetical protein
YP_004330849.1	SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: sen:SACE_4449 quinoprotein ethanol dehydrogenase precursor; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal
YP_004330850.1	TIGRFAM: Coenzyme PQQ biosynthesis protein A; PFAM: Coenzyme PQQ biosynthesis protein A
YP_004330851.1	TIGRFAM: Coenzyme PQQ biosynthesis protein B; KEGG: gob:Gobs_2453 pyrroloquinoline quinone biosynthesis protein PqqB
YP_004330852.1	TIGRFAM: Coenzyme PQQ biosynthesis protein C; KEGG: sen:SACE_4446 pyrroloquinoline quinone biosynthesis protein PqqC; PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C
YP_004330853.1	TIGRFAM: Coenzyme PQQ synthesis D, bacteria; KEGG: msm:MSMEG_3722 bifunctional coenzyme PQQ synthesis protein C/D
YP_004330854.1	TIGRFAM: Coenzyme PQQ biosynthesis protein E, bacteria; PFAM: Radical SAM; KEGG: gob:Gobs_2456 coenzyme PQQ biosynthesis protein E; SMART: Elongator protein 3/MiaB/NifB
YP_004330855.1	PFAM: Domain of unknown function DUF204; KEGG: btk:BT9727_5008 integral membrane protein
YP_004330856.1	KEGG: nml:Namu_1619 ferredoxin
YP_004330857.1	PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: amd:AMED_5939 respiratory-chain NADH dehydrogenase-related protein; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004330858.1	PFAM: Flavoprotein transmembrane component; KEGG: amd:AMED_5940 hypothetical protein
YP_004330859.1	PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: ami:Amir_1182 ApbE family lipoprotein
YP_004330861.1	KEGG: nml:Namu_0038 winged helix family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004330862.1	KEGG: ami:Amir_4352 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004330863.1	KEGG: nca:Noca_4421 hypothetical protein
YP_004330865.1	KEGG: saq:Sare_1642 hypothetical protein
YP_004330866.1	KEGG: scb:SCAB_11001 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004330867.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: nml:Namu_2984 NADH ubiquinone oxidoreductase 20 kDa subunit
YP_004330868.1	KEGG: nml:Namu_2985 NADH/ubiquinone/plastoquinone (complex I); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004330869.1	KEGG: nml:Namu_2986 respiratory-chain NADH dehydrogenase subunit 1
YP_004330870.1	KEGG: nml:Namu_2987 hypothetical protein
YP_004330871.1	KEGG: nml:Namu_2988 NADH/ubiquinone/plastoquinone (complex I); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004330872.1	PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; Nickel-dependent hydrogenase, large subunit; KEGG: nml:Namu_2989 NADH dehydrogenase (ubiquinone) 30 kDa subunit
YP_004330873.1	KEGG: sen:SACE_3300 hypothetical protein
YP_004330875.1	TIGRFAM: Muconolactone delta-isomerase; KEGG: rer:RER_54210 muconolactone isomerase; PFAM: Muconolactone delta-isomerase
YP_004330876.1	TIGRFAM: Catechol 1,2-dioxygenase, actinobacteria; KEGG: rer:RER_54230 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal
YP_004330877.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: gob:Gobs_1295 mandelate racemase/muconate lactonizing protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004330878.1	KEGG: tcu:Tcur_0530 oxidoreductase FAD/NAD(P)-binding domain-containing protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding
YP_004330879.1	PFAM: Phenol hydroxylase,conserved region; KEGG: tcu:Tcur_0527 phenol hydroxylase subunit P4
YP_004330880.1	KEGG: tcu:Tcur_0526 methane/phenol/toluene hydroxylase; PFAM: Methane/phenol/toluene hydroxylase; YHS
YP_004330881.1	PFAM: Monooxygenase component MmoB/DmpM; KEGG: tcu:Tcur_0525 monooxygenase component MmoB/DmpM
YP_004330882.1	KEGG: tcu:Tcur_0524 phenol 2-monooxygenase; PFAM: Methane/phenol/toluene hydroxylase
YP_004330883.1	KEGG: tcu:Tcur_0523 hypothetical protein
YP_004330884.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_1895 HTH-type transcriptional regulator AlsR
YP_004330885.1	KEGG: rop:ROP_04230 carboxymuconolactone decarboxylase protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004330886.1	KEGG: tcu:Tcur_3211 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004330887.1	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: scb:SCAB_6611 3-oxoadipate CoA-transferase subunit; PFAM: Coenzyme A transferase
YP_004330888.1	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: scb:SCAB_6621 3-oxoadipate CoA-transferase subunit A; PFAM: Coenzyme A transferase
YP_004330889.1	TIGRFAM: Thiolase; KEGG: nca:Noca_1013 acetyl-CoA acetyltransferases; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004330890.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nca:Noca_1012 LysR family transcriptional regulator
YP_004330891.1	KEGG: mmi:MMAR_5294 PE-PGRS family protein
YP_004330892.1	PFAM: Methyltransferase type 11; KEGG: sen:SACE_4341 methyltransferase
YP_004330893.1	PFAM: Metallo-dependent phosphatase; KEGG: msp:Mspyr1_42840 phosphohydrolase
YP_004330894.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sco:SCO0907 dehydrogenase
YP_004330895.1	KEGG: sen:SACE_0761  two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004330896.1	KEGG: sen:SACE_0762  two-component system sensor kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004330897.1	KEGG: sen:SACE_0765 serine protease, C-terminal; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF
YP_004330898.1	TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: sen:SACE_0766  molybdenum cofactor biosynthesis protein; SMART: Molybdopterin binding
YP_004330899.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mab:MAB_1874  oxidoreductase; SMART: Polyketide synthase, enoylreductase
YP_004330900.1	KEGG: kfl:Kfla_0038 hypothetical protein
YP_004330901.1	KEGG: amd:AMED_8316 hypothetical protein
YP_004330902.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: amd:AMED_1937 LysR family transcriptional regulator
YP_004330903.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: amd:AMED_1936 carbonyl reductase
YP_004330904.1	KEGG: amd:AMED_8315 large conductance mechanosensitive channel, MscL family; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel
YP_004330905.1	KEGG: rop:ROP_56940 hypothetical protein; PFAM: SAF domain; SMART: SAF domain
YP_004330906.1	TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, KEGG: mil:ML5_0952 regulatory protein, fmdb family; SMART: Regulatory protein, FmdB
YP_004330907.1	KEGG: svi:Svir_32680 5,10-methenyltetrahydrofolate synthetase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_004330908.1	KEGG: ami:Amir_0628 nucleotidyl transferase; PFAM: Nucleotidyl transferase
YP_004330909.1	TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; KEGG: ami:Amir_0629 molybdenum cofactor synthesis domain protein; SMART: Molybdopterin binding
YP_004330910.1	KEGG: amd:AMED_8309 ribosomal-protein-alanine N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004330911.1	KEGG: amd:AMED_8308 hypothetical protein
YP_004330912.1	KEGG: fra:Francci3_1684 resolvase-like protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal
YP_004330914.1	KEGG: stp:Strop_1985 hypothetical protein
YP_004330915.1	PFAM: Biotin/lipoyl attachment; KEGG: tbi:Tbis_1751 biotin/lipoyl attachment domain-containing protein
YP_004330916.1	KEGG: ttr:Tter_1968 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004330917.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nca:Noca_1187 antibiotic biosynthesis monooxygenase
YP_004330918.1	PFAM: Domain of unknown function DUF59; Ribosomal protein L22/L17; KEGG: svi:Svir_16180 predicted metal-sulfur cluster biosynthetic enzyme
YP_004330919.1	KEGG: rxy:Rxyl_2822 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004330920.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rme:Rmet_1314 Rieske (2Fe-2S) region
YP_004330921.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_0215 methane/phenol/toluene hydroxylase
YP_004330922.1	PFAM: Monooxygenase component MmoB/DmpM; KEGG: bbt:BBta_1595 toluene-4-monooxygenase system protein D
YP_004330923.1	PFAM: Toluene-4-monooxygenase system B; KEGG: fra:Francci3_0212 toluene-4-monooxygenase system B
YP_004330924.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_0211 methane/phenol/toluene hydroxylase
YP_004330925.1	KEGG: reh:H16_B1338 hypothetical protein
YP_004330926.1	PFAM: Protein of unknown function DUF1486
YP_004330927.1	PFAM: ThiJ/PfpI; KEGG: nfi:NFIA_002150 ThiJ/PfpI family protein
YP_004330928.1	PFAM: ThiJ/PfpI; KEGG: rer:RER_57150 hypothetical protein
YP_004330929.1	KEGG: pmy:Pmen_2638 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004330930.1	SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rer:RER_54220 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal
YP_004330931.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: bur:Bcep18194_B1185 alpha/beta hydrolase
YP_004330933.1	KEGG: rha:RHA1_ro04796 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004330934.1	PFAM: Glycosyl transferase, family 39; KEGG: sen:SACE_0791 glycosyl transferase protein
YP_004330935.1	TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: nfa:nfa49120  methyltransferase; PFAM: Tetrapyrrole methylase
YP_004330936.1	PFAM: Cation/H+ exchanger; KEGG: amd:AMED_6003 monovalent cation:H+ antiporter-2, CPA2 family
YP_004330937.1	PFAM: Regulator of K+ conductance, C-terminal; KEGG: amd:AMED_6002 TrkA domain-containing protein
YP_004330938.1	TIGRFAM: Chorismate mutase, periplasmic; PFAM: Chorismate mutase, type II; KEGG: sen:SACE_7067 chorismate mutase; SMART: Chorismate mutase
YP_004330939.1	PFAM: O-methyltransferase, family 2; KEGG: sma:SAV_2382 O-methyltransferase
YP_004330940.1	KEGG: saq:Sare_1382 LuxR family transcriptional regulator
YP_004330941.1	PFAM: Aminoacyl-tRNA synthetase, class I (M); TIGRFAM: Methionyl-tRNA synthetase, class Ia; HAMAP: Methionyl-tRNA synthetase; KEGG: sen:SACE_0799 methionyl-tRNA synthetase
YP_004330942.1	KEGG: sen:SACE_0800  deoxyribonuclease; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related
YP_004330943.1	PFAM: Transglycosylase-like; G5; Domain of unknown function DUF348; KEGG: svi:Svir_32470 hypothetical protein
YP_004330944.1	SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: sen:SACE_0802 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase
YP_004330945.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: art:Arth_3006 PadR family transcriptional regulator
YP_004330946.1	KEGG: ach:Achl_2717 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004330947.1	PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: amd:AMED_8246 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
YP_004330948.1	KEGG: ami:Amir_0650 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004330949.1	KEGG: rop:ROP_10760 hypothetical protein
YP_004330950.1	manually curated; KEGG: fre:Franean1_2584 hypothetical protein
YP_004330951.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_2583 TetR family transcriptional regulator
YP_004330952.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: tcu:Tcur_1684 daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter-like
YP_004330953.1	PFAM: ABC-2 type transporter; KEGG: sen:SACE_0423 multidrug ABC transporter permease
YP_004330954.1	KEGG: cai:Caci_4666 transcriptional regulator, winged helix family; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal
YP_004330955.1	KEGG: msp:Mspyr1_19610 acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004330956.1	KEGG: ami:Amir_0652 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004330957.1	PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: req:REQ_12410 aminoacyl-tRNA hydrolase pth
YP_004330958.1	TIGRFAM: Ribosomal protein L25, long-form; HAMAP: Ribosomal protein L25, long-form; KEGG: rop:ROP_57640 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, short-form
YP_004330962.1	KEGG: fre:Franean1_4241 hypothetical protein
YP_004330963.1	PFAM: Cell divisionFtsK/SpoIIIE; KEGG: fre:Franean1_1448 cell divisionFtsK/SpoIIIE
YP_004330967.1	KEGG: ote:Oter_1689 cell wall surface anchor family protein
YP_004330972.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004330973.1	manually curated; PFAM: IstB-like ATP-binding protein; KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004330974.1	KEGG: rer:pREL1_0265 transposase; manually curated; PFAM: Integrase, catalytic core
YP_004330977.1	KEGG: mkm:Mkms_2962 hypothetical protein
YP_004330979.1	PFAM: Prophage CP4-57 regulatory; KEGG: gob:Gobs_0015 regulatory protein MerR
YP_004330980.1	KEGG: msp:Mspyr1_12070 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004330981.1	PFAM: Integrase, catalytic core, phage; KEGG: mau:Micau_5363 integrase protein
YP_004330982.1	TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: sen:SACE_0816 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase
YP_004330983.1	PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: ami:Amir_0657 UDP-N-acetylglucosamine pyrophosphorylase
YP_004330984.1	PFAM: YkuD domain; KEGG: sen:SACE_4786  secreted protein
YP_004330985.1	KEGG: ske:Sked_32410  regulator of disulfide bond formation; TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; PFAM: Peroxiredoxin, OsmC-like protein
YP_004330986.1	KEGG: svi:Svir_16070 delta-9 acyl-phospholipid desaturase; PFAM: Fatty acid desaturase, type 1
YP_004330987.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: amd:AMED_0567 LmbE family protein
YP_004330988.1	PFAM: Protein of unknown function DUF2277; KEGG: ami:Amir_0703 hypothetical protein
YP_004330989.1	KEGG: scb:SCAB_61611 protease; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41
YP_004330990.1	KEGG: fra:Francci3_4341 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004330991.1	KEGG: sen:SACE_7259  ABC transporter membrane protein
YP_004330992.1	TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; KEGG: sen:SACE_0826 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004330993.1	KEGG: ami:Amir_0666 hypothetical protein
YP_004330994.1	KEGG: svi:Svir_32280 MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG,  catalytic core
YP_004330995.1	PFAM: Transposase, IS4-like; KEGG: nml:Namu_1755 transposase IS4 family protein
YP_004330996.1	KEGG: ami:Amir_4289 Dyp-type peroxidase; TIGRFAM: Tat-translocated enzyme; Dyp-type peroxidase; PFAM: Dyp-type peroxidase
YP_004330997.1	PFAM: Peptidase M75, Imelysin; KEGG: ami:Amir_4288 hypothetical protein
YP_004330998.1	PFAM: Iron permease FTR1; KEGG: ami:Amir_4287 iron permease FTR1
YP_004330999.1	PFAM: Iron permease FTR1; KEGG: fal:FRAAL1404  transmembrane protein
YP_004331000.1	PFAM: Peptidase M75, Imelysin; KEGG: fri:FraEuI1c_6364 peptidase M75, imelysin
YP_004331001.1	KEGG: cai:Caci_3900 Dyp-type peroxidase; TIGRFAM: Tat-translocated enzyme; Twin-arginine translocation pathway, signal sequence; Dyp-type peroxidase; PFAM: Dyp-type peroxidase
YP_004331002.1	KEGG: ami:Amir_0670 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat
YP_004331003.1	PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: sen:SACE_0838 phosphopyruvate hydratase
YP_004331004.1	PFAM: Septum formation initiator; KEGG: sen:SACE_0839 septum formation initiator
YP_004331005.1	PFAM: Protein of unknown function DUF501; KEGG: sna:Snas_5821 hypothetical protein
YP_004331006.1	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: mil:ML5_5311 acyl-CoA dehydrogenase domain-containing protein
YP_004331007.1	PFAM: Ppx/GppA phosphatase; KEGG: sen:SACE_0843 Ppx/GppA family phosphatase
YP_004331008.1	PFAM: Uracil-DNA glycosylase-like; KEGG: rop:ROP_60020  uracil-DNA glycosylase
YP_004331009.1	KEGG: ami:Amir_0688 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004331010.1	KEGG: sro:Sros_4162 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein
YP_004331011.1	KEGG: mav:MAV_2709 short chain dehydrogenase; manually curated; PFAM: NAD-dependent epimerase/dehydratase
YP_004331012.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_6677 transcriptional regulator, LysR family protein
YP_004331013.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: sro:Sros_3264 deaminase-reductase domain-containing protein
YP_004331014.1	KEGG: ank:AnaeK_3390 MJ0042 family finger-like protein
YP_004331015.1	PFAM: Integrase, catalytic core; KEGG: mav:MAV_3533 transposase
YP_004331016.1	KEGG: gbr:Gbro_2666 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004331017.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cai:Caci_4804 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004331018.1	KEGG: amd:AMED_6526 two-component system response regulator; PFAM: ANTAR; GAF; SMART: GAF
YP_004331019.1	PFAM: Luciferase-like, subgroup; KEGG: amd:AMED_3495 luciferase-like protein
YP_004331020.1	KEGG: pla:Plav_1269 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004331021.1	KEGG: aeh:Mlg_1624 hypothetical protein
YP_004331022.1	KEGG: svi:Svir_02010 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004331023.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amd:AMED_0761 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004331024.1	KEGG: cai:Caci_0325 hypothetical protein
YP_004331025.1	PFAM: Metallo-dependent phosphatase; KEGG: sco:SCO6075 hypothetical protein
YP_004331026.1	KEGG: fre:Franean1_6246 hypothetical protein
YP_004331027.1	KEGG: vcn:VOLCADRAFT_89522 hypothetical protein
YP_004331028.1	KEGG: ppy:PPE_00386 hypothetical protein
YP_004331029.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aai:AARI_11220  GNAT family acetyltransferase
YP_004331030.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_5262 acetyltransferase
YP_004331031.1	PFAM: Cupin 2, conserved barrel; KEGG: cai:Caci_6233 cupin 2 conserved barrel domain protein
YP_004331032.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sma:SAV_1382 TetR family transcriptional regulator
YP_004331033.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_54910 oxidoreductase
YP_004331034.1	KEGG: sma:SAV_1381 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004331035.1	KEGG: amd:AMED_2600 hypothetical protein
YP_004331036.1	KEGG: sen:SACE_0895 hypothetical protein
YP_004331037.1	TIGRFAM: Thiolase; KEGG: amd:AMED_8108 acetyl-CoA C-acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal
YP_004331038.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: amd:AMED_7439 hypothetical protein
YP_004331039.1	PFAM: YCII-related; KEGG: rer:RER_52620 hypothetical protein
YP_004331040.1	KEGG: sro:Sros_4397  sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331041.1	KEGG: tpr:Tpau_0903 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331042.1	KEGG: cai:Caci_6918 transcriptional regulator, XRE family; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat
YP_004331043.1	TIGRFAM: Cystathionine beta-synthase; KEGG: sen:SACE_0899 cystathionine beta-synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Cystathionine beta-synthase, core
YP_004331044.1	PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: nml:Namu_4420 cystathionine gamma-synthase
YP_004331045.1	KEGG: sen:SACE_0903 hypothetical protein
YP_004331046.1	KEGG: svi:Svir_31840 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT
YP_004331047.1	KEGG: sen:SACE_0907 transcription elongation factor G; TIGRFAM: Transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal
YP_004331048.1	KEGG: amd:AMED_8090 LmbE family protein; TIGRFAM: Mycothiol conjugate amidase, Mca; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase
YP_004331049.1	KEGG: amd:AMED_5086 hypothetical protein
YP_004331050.1	KEGG: sen:SACE_0910 hypothetical protein
YP_004331051.1	KEGG: sen:SACE_0923 hypothetical protein
YP_004331052.1	KEGG: amd:AMED_8084 hypothetical protein
YP_004331053.1	manually curated; TIGRFAM: HylII; KEGG: sen:SACE_0920 hemolysin III family channel protein; PFAM: Hly-III-related
YP_004331054.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: sen:SACE_0919  undecaprenyl pyrophosphate synthetase
YP_004331057.1	KEGG: ami:Amir_0716 hypothetical protein
YP_004331058.1	KEGG: sen:SACE_0915 PhoH-like phosphate starvation-induced protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc
YP_004331059.1	TIGRFAM: IMP dehydrogenase-related 1; KEGG: amd:AMED_8071 IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core
YP_004331060.1	PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; KEGG: fre:Franean1_2019 ketopantoate reductase ApbA/PanE
YP_004331061.1	PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, N-terminal; DNA ligase, ATP-dependent, C-terminal; TIGRFAM: DNA ligase, ATP-dependent; HAMAP: DNA ligase, ATP-dependent, bacterial/archaeal; KEGG: gob:Gobs_2344 DNA ligase I, ATP-dependent Dnl1
YP_004331062.1	KEGG: ami:Amir_5145 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain
YP_004331063.1	HAMAP: Fumarate hydratase, class II; KEGG: ami:Amir_0720 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal
YP_004331064.1	PFAM: YkuD domain; KEGG: amd:AMED_8939  secreted protein
YP_004331065.1	TIGRFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase; KEGG: ami:Amir_0724 fructose 1,6-bisphosphatase II; PFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase
YP_004331066.1	KEGG: rop:ROP_59280 hypothetical protein
YP_004331067.1	TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: tpr:Tpau_3117 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit
YP_004331068.1	TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: sen:SACE_0937  exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type
YP_004331069.1	KEGG: amd:AMED_8055 hypothetical protein
YP_004331070.1	PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: rer:RER_42340 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
YP_004331071.1	KEGG: ami:Amir_0730 hypothetical protein
YP_004331072.1	PFAM: DNA recombination RmuC; KEGG: ace:Acel_1860 hypothetical protein
YP_004331073.1	KEGG: svi:Svir_31430 O-6-methylguanine DNA methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding
YP_004331074.1	KEGG: svi:Svir_31420 DNA-3-methyladenine glycosylase II/DNA-O6-methylguanine--protein-cysteine S-methyltransferase/transcriptional regulator Ada; PFAM: Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; AlkA, N-terminal; HhH-GPD domain; SMART: Helix-turn-helix, AraC type, DNA binding domain; HhH-GPD domain
YP_004331075.1	KEGG: mmi:MMAR_3358 hypothetical protein
YP_004331076.1	KEGG: amd:AMED_8047 translation-associated GTPase; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related
YP_004331077.1	PFAM: Protein of unknown function DUF939; KEGG: gob:Gobs_2756 hypothetical protein
YP_004331078.1	KEGG: cwo:Cwoe_0574 peptidase S15; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal
YP_004331079.1	PFAM: Nitroreductase-like; KEGG: cti:RALTA_A1302  nitroreductase
YP_004331080.1	KEGG: mno:Mnod_8468 hypothetical protein
YP_004331081.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_3336 TetR family transcriptional regulator
YP_004331083.1	PFAM: Luciferase-like, subgroup; KEGG: nca:Noca_3005 luciferase protein
YP_004331084.1	PFAM: DNA helicase, UvrD/REP type; KEGG: amd:AMED_8980  helicase
YP_004331086.1	KEGG: mgi:Mflv_3345 fibronectin-attachment family protein
YP_004331087.1	KEGG: sro:Sros_8897  transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004331088.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: saq:Sare_1540 activator of HSP90 ATPase 1 family protein
YP_004331089.1	KEGG: amd:AMED_0964 deaminase-reductase domain-containing protein
YP_004331090.1	TIGRFAM: DHAP synthase, class 1; KEGG: amd:AMED_2459 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA
YP_004331091.1	PFAM: Protein of unknown function DUF1470; KEGG: msm:MSMEG_6742 hypothetical protein
YP_004331092.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msm:MSMEG_6743 lactoylglutathione lyase
YP_004331093.1	PFAM: Transcriptional coactivator/pterin dehydratase; KEGG: rop:ROP_59910 pterin-4-alpha-carbinolamine dehydratase
YP_004331094.1	KEGG: sen:SACE_0994  ABC transporter integral membrane protein
YP_004331095.1	KEGG: ami:Amir_0751 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004331096.1	KEGG: sen:SACE_0996 hypothetical protein
YP_004331097.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004331098.1	KEGG: ami:Amir_0753 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004331099.1	KEGG: ami:Amir_0754 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004331100.1	PFAM: NUDIX hydrolase domain; KEGG: sen:SACE_0999 hypothetical protein
YP_004331101.1	KEGG: msm:MSMEG_5844 hypothetical protein
YP_004331102.1	KEGG: cef:CE1010 hypothetical protein
YP_004331103.1	TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: amd:AMED_8030 GTP-binding protein TypA; SMART: Translation elongation factor EFG/EF2, C-terminal
YP_004331104.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ami:Amir_0760 extracellular solute-binding protein family 5
YP_004331105.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ols:Olsu_1266 extracellular solute-binding protein family 5
YP_004331106.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sti:Sthe_2953 binding-protein-dependent transport systems inner membrane component
YP_004331107.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: gyc:GYMC61_1354 binding-protein-dependent transport systems inner membrane component
YP_004331108.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: sro:Sros_1953 glutathione import ATP-binding protein GsiA; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004331109.1	KEGG: sen:SACE_1008 N-acetylglucosaminylphosphatidylinositol deacetylase; TIGRFAM: Mycothiol biosynthesis protein, MshB; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase
YP_004331110.1	KEGG: amd:AMED_8022 hypothetical protein
YP_004331111.1	KEGG: amd:AMED_8021 hypothetical protein
YP_004331112.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_1024 GCN5-related N-acetyltransferase
YP_004331113.1	PFAM: 4Fe-4S binding domain; KEGG: sen:SACE_1010 4Fe-4S ferredoxin, iron-sulfur binding protein
YP_004331114.1	TIGRFAM: Succinyldiaminopimelate transaminase, actinobacteria; KEGG: amd:AMED_1027 aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004331115.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_4247 cyanate MFS transporter
YP_004331116.1	KEGG: sen:SACE_1012 CHAD domain-containing protein; PFAM: CHAD; SMART: CHAD
YP_004331117.1	TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: tbi:Tbis_2652  tetrahydrodipicolinate N-succinyltransferase
YP_004331118.1	TIGRFAM: Succinyl-diaminopimelate desuccinylase; KEGG: nml:Namu_4301 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004331119.1	KEGG: sen:SACE_1020 lysine decarboxylase protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
YP_004331120.1	KEGG: sen:SACE_1021 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
YP_004331121.1	TIGRFAM: Dihydropteroate synthase; KEGG: req:REQ_14370 dihydropteroate synthase FolP2; PFAM: Pterin-binding
YP_004331122.1	PFAM: Glycosyl transferase, family 2; KEGG: svi:Svir_06330  glucosyl-3-phosphoglycerate synthase
YP_004331123.1	TIGRFAM: DivIVA domain; KEGG: sen:SACE_1026 hypothetical protein
YP_004331124.1	PFAM: Polyketide cyclase/dehydrase; KEGG: amd:AMED_1058 hypothetical protein
YP_004331125.1	TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: sen:SACE_1027 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase
YP_004331126.1	KEGG: mil:ML5_0910 hypothetical protein
YP_004331128.1	PFAM: Protein of unknown function DUF1470; KEGG: ami:Amir_3432 protein of unknown function DUF1470
YP_004331129.1	KEGG: ami:Amir_0793 glycogen synthase; TIGRFAM: Glycogen synthase, corynebacterial; PFAM: Glycosyl transferase, group 1
YP_004331130.1	PFAM: Nucleotidyl transferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase GlgC, bacterial; KEGG: ami:Amir_0794 glucose-1-phosphate adenylyltransferase
YP_004331131.1	PFAM: Methyltransferase type 11; KEGG: nml:Namu_2155 O-methyltransferase 3
YP_004331132.1	KEGG: amd:AMED_1067 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331133.1	KEGG: ami:Amir_0796  transmembrane anti-sigma factor
YP_004331134.1	KEGG: sen:SACE_1034 possinble serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF
YP_004331135.1	TIGRFAM: Twin-arginine translocation protein TatB; HAMAP: Twin-arginine translocation protein TatB; KEGG: ami:Amir_0798 sec-independent translocase; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_004331136.1	KEGG: amd:AMED_2325  transmembrane protein
YP_004331137.1	PFAM: Amidase; KEGG: msm:MSMEG_2497  amidase
YP_004331138.1	KEGG: sen:SACE_3772  D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004331139.1	KEGG: nda:Ndas_4752 hypothetical protein
YP_004331140.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: sen:SACE_3770 Asp/Glu racemase
YP_004331141.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: sen:SACE_3769 decarboxylase
YP_004331142.1	KEGG: nda:Ndas_4755 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004331143.1	PFAM: Auxin efflux carrier; KEGG: sen:SACE_4307  transport integral membrane protein
YP_004331144.1	KEGG: sen:SACE_3766 4-aminobutyrate transaminase; PFAM: Aminotransferase class-III
YP_004331145.1	PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: svi:Svir_06470 chromosome partitioning ATPase
YP_004331146.1	manually curated; PFAM: HTH transcriptional regulator, MarR; KEGG: ami:Amir_0800 transcriptional regulator, MarR family; SMART: HTH transcriptional regulator, MarR
YP_004331147.1	PFAM: Protein of unknown function DUF1003; KEGG: amd:AMED_1072 hypothetical protein
YP_004331148.1	KEGG: ami:Amir_0802 MgtE intracellular region; PFAM: Magnesium transporter, MgtE intracellular domain; PRC-barrel; Cystathionine beta-synthase, core; SMART: Magnesium transporter, MgtE intracellular domain
YP_004331149.1	KEGG: mau:Micau_0670 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_004331150.1	KEGG: ami:Amir_0805 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain
YP_004331151.1	KEGG: amd:AMED_1078 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004331152.1	KEGG: ami:Amir_0806 hypothetical protein
YP_004331153.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: rop:ROP_60480  ABC transporter substrate-binding protein
YP_004331154.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_60490  ABC transporter permease
YP_004331155.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: amd:AMED_1082 permease component of ABC-type sugar transport system
YP_004331156.1	PFAM: ABC transporter-like; KEGG: ami:Amir_0810 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004331157.1	KEGG: sgr:SGR_2953 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004331158.1	TIGRFAM: 1-aminocyclopropane-1-carboxylate deaminase; KEGG: sgr:SGR_2954 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004331159.1	PFAM: Integrase, catalytic core; KEGG: mpa:MAP3854 hypothetical protein
YP_004331160.1	KEGG: amd:AMED_1093 hypothetical protein
YP_004331161.1	PFAM: Metallo-dependent phosphatase; KEGG: amd:AMED_1094 phosphoesterase
YP_004331162.1	PFAM: Methyltransferase type 11; KEGG: mjl:Mjls_5458 methyltransferase type 12
YP_004331163.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: amd:AMED_4084 rieske (2Fe-2S) domain-containing protein
YP_004331164.1	KEGG: sen:SACE_1051 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like
YP_004331165.1	PFAM: MaoC-like dehydratase; KEGG: amd:AMED_1097 MaoC-like dehydratase
YP_004331166.1	KEGG: amd:AMED_1099 NUDIX hydrolase; manually curated; PFAM: NUDIX hydrolase domain
YP_004331167.1	KEGG: amd:AMED_1100 hypothetical protein
YP_004331168.1	PFAM: Domain of unknown function DUF304l; KEGG: amd:AMED_1101 hypothetical protein
YP_004331169.1	KEGG: ami:Amir_0820 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_004331170.1	KEGG: svi:Svir_06610 RecB family exonuclease
YP_004331171.1	KEGG: amd:AMED_1106 hypothetical protein
YP_004331172.1	KEGG: sen:SACE_1059 hypothetical protein
YP_004331173.1	KEGG: ami:Amir_0824 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004331174.1	KEGG: sen:SACE_1062 hypothetical protein
YP_004331175.1	KEGG: rha:RHA1_ro06358 hypothetical protein
YP_004331176.1	KEGG: cwo:Cwoe_0952 YhgE/Pip C-terminal domain protein; TIGRFAM: Phage infection protein, YhgE, C-terminal; Phage infection protein, YhgE, N-terminal; PFAM: ABC-2 type transporter
YP_004331177.1	KEGG: sgr:SGR_5405  ABC transporter ATP-binding protein
YP_004331178.1	KEGG: sen:SACE_1064 flavin binding monooxygenase
YP_004331179.1	KEGG: ami:Amir_0828 transcriptional regulator, TetR family; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_004331180.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_5255 short-chain dehydrogenase/reductase sdr
YP_004331181.1	KEGG: ami:Amir_0829 hypothetical protein
YP_004331182.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: sen:SACE_1067 alpha/beta hydrolase fold
YP_004331183.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_1068 TetR family transcriptional regulator
YP_004331184.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: amd:AMED_3510 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004331185.1	KEGG: sro:Sros_3700 hypothetical protein
YP_004331186.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: svi:Svir_06730 predicted hydrolase or acyltransferase of alpha/beta superfamily
YP_004331187.1	KEGG: ami:Amir_0833 molybdopterin biosynthesis-like protein MoeZ; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; Rhodanese-like; SMART: Rhodanese-like
YP_004331188.1	KEGG: bld:BLi00801 hypothetical protein
YP_004331189.1	KEGG: bmn:BMA10247_0522 hypothetical protein
YP_004331190.1	TIGRFAM: Conserved hypothetical protein CHP02569; KEGG: ami:Amir_0834 aminoglycoside phosphotransferase
YP_004331191.1	KEGG: sgr:SGR_4575  nitrate extrusion protein; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1
YP_004331192.1	PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: amd:AMED_1121 nitrate reductase catalytic subunit; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_004331193.1	KEGG: ami:Amir_0836 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain
YP_004331194.1	TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: ami:Amir_0838 nitrite reductase (NAD(P)H), large subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_004331195.1	KEGG: sro:Sros_5923 nitrite reductase (NAD(P)H); TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004331196.1	KEGG: sma:SAV_5120 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal
YP_004331197.1	PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; KEGG: rop:ROP_64300 hypothetical protein
YP_004331198.1	PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: svi:Svir_06790 predicted methylated DNA-protein cysteine methyltransferase
YP_004331199.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rop:ROP_64360  hydrolase
YP_004331200.1	PFAM: DNA helicase, UvrD/REP type; KEGG: ami:Amir_0852 UvrD/REP helicase
YP_004331201.1	PFAM: DNA helicase, UvrD/REP type; KEGG: ami:Amir_0851 UvrD/REP helicase
YP_004331202.1	KEGG: gob:Gobs_2005 DoxX family protein
YP_004331203.1	KEGG: ami:Amir_2612 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004331204.1	PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: tbi:Tbis_3455 saccharopine dehydrogenase
YP_004331205.1	PFAM: Regulator of K+ conductance, N-terminal; Ion transport 2; KEGG: sen:SACE_1081 transmembrane cation transporter
YP_004331206.1	PFAM: ROK; KEGG: cai:Caci_6688 ROK family protein
YP_004331207.1	TIGRFAM: Xylulokinase; KEGG: gob:Gobs_2984 xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004331208.1	TIGRFAM: Xylose isomerase, actinobacteria; HAMAP: Xylose isomerase; KEGG: ace:Acel_2064 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_004331209.1	KEGG: gbr:Gbro_3810 exodeoxyribonuclease III Xth; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase
YP_004331210.1	KEGG: kfl:Kfla_1919 hypothetical protein
YP_004331211.1	PFAM: Peptidase C60, sortase A/B; KEGG: kra:Krad_3106 peptidase C60 sortase A and B
YP_004331212.1	KEGG: svi:Svir_28610 gamma-glutamyl phosphate reductase
YP_004331213.1	KEGG: fre:Franean1_0886 peptidase S1 and S6 chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF
YP_004331214.1	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: svi:Svir_06870 predicted Zn-dependent peptidase
YP_004331215.1	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: svi:Svir_06880 predicted Zn-dependent peptidase
YP_004331216.1	KEGG: fal:FRAAL0398 NADH pyrophosphatase; PFAM: NUDIX hydrolase domain; Zinc ribbon, NADH pyrophosphatase; NADH pyrophosphatase-like, N-terminal
YP_004331217.1	KEGG: cfl:Cfla_2470 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-like protein, actinobacteria; PFAM: Glutaredoxin
YP_004331218.1	KEGG: amd:AMED_1233 ATP-dependent DNA helicase; PFAM: DNA helicase, UvrD/REP type; Helicase/RNase D C-terminal, HRDC domain; SMART: Helicase/RNase D C-terminal, HRDC domain
YP_004331220.1	PFAM: Transcription factor WhiB; AT hook, DNA-binding motif; KEGG: sen:SACE_1093 WhiB-family transcriptional regulator
YP_004331222.1	PFAM: ABC-1; KEGG: sen:SACE_1096 ABC transporter ATP-binding protein
YP_004331223.1	KEGG: amd:AMED_1241 hypothetical protein
YP_004331224.1	KEGG: ami:Amir_0937 protein of unknown function DUF45; manually curated; PFAM: Protein of unknown function DUF45
YP_004331225.1	KEGG: sen:SACE_1099 hypothetical protein; TIGRFAM: Protein of unknown function DUF2342; PFAM: Protein of unknown function DUF2342
YP_004331226.1	KEGG: amd:AMED_1246 hypothetical protein; HAMAP: Uncharacterised protein family UPF0182; PFAM: Uncharacterised protein family UPF0182
YP_004331227.1	PFAM: Integrase, catalytic core, phage; KEGG: mmc:Mmcs_1422 phage integrase
YP_004331229.1	KEGG: stp:Strop_0060 hypothetical protein
YP_004331230.1	KEGG: sen:SACE_1124 hypothetical protein; PFAM: DNA primase/polymerase, bifunctional, N-terminal; SMART: DNA primase/polymerase, bifunctional, N-terminal
YP_004331231.1	PFAM: Cell divisionFtsK/SpoIIIE; KEGG: fre:Franean1_1448 cell divisionFtsK/SpoIIIE
YP_004331232.1	KEGG: kfl:Kfla_0387 hypothetical protein
YP_004331233.1	KEGG: ami:Amir_3643 hypothetical protein
YP_004331236.1	KEGG: nfa:nfa7010  transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004331237.1	KEGG: nfa:nfa7000  kinase
YP_004331239.1	KEGG: mbt:JTY_1402 hypothetical protein; PFAM: RelA/SpoT; SMART: RelA/SpoT
YP_004331240.1	PFAM: Protein of unknown function DUF2252; KEGG: nml:Namu_2955 hypothetical protein
YP_004331241.1	PFAM: Ion transport 2; KEGG: sma:SAV_3759 hypothetical protein
YP_004331242.1	PFAM: Bile acid:sodium symporter; KEGG: mac:MA2632 transmembrane transport protein
YP_004331243.1	KEGG: sro:Sros_4871 hypothetical protein
YP_004331244.1	KEGG: sro:Sros_4872 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331245.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: sen:SACE_2518 hypothetical protein
YP_004331246.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: nml:Namu_4764 transposase IS111A/IS1328/IS1533
YP_004331247.1	PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase
YP_004331248.1	KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004331249.1	PFAM: ThiJ/PfpI; KEGG: cwo:Cwoe_5674 ThiJ/PfpI domain protein
YP_004331250.1	KEGG: scb:SCAB_78731 acyl-CoA dehydrogenase
YP_004331251.1	KEGG: rha:RHA1_ro02683 succinate-semialdehyde dehydrogenase (NAD(P)+); PFAM: Aldehyde dehydrogenase domain
YP_004331252.1	KEGG: pde:Pden_4407 permease for cytosine/purines, uracil, thiamine, allantoin transporter
YP_004331253.1	KEGG: sno:Snov_1568 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004331254.1	KEGG: msm:MSMEG_3973 N-methylhydantoinase; PFAM: Hydantoinase B/oxoprolinase
YP_004331255.1	KEGG: rme:Rmet_1316 methane/phenol/toluene hydroxylase; PFAM: Methane/phenol/toluene hydroxylase; YHS
YP_004331257.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rme:Rmet_1314 Rieske (2Fe-2S) region
YP_004331258.1	PFAM: Monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5676 monooxygenase component MmoB/DmpM
YP_004331259.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: rme:Rmet_1312 methane/phenol/toluene hydroxylase
YP_004331260.1	KEGG: msm:MSMEG_3975 regulatory protein
YP_004331261.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fal:FRAAL4441  LysR-type transcriptional regulator
YP_004331262.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: fal:FRAAL4440  keto acyl reductase
YP_004331263.1	SMART: HTH transcriptional regulator, ArsR; KEGG: nfa:nfa28340  transcriptional regulator
YP_004331264.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_4482 hypothetical protein
YP_004331265.1	KEGG: sna:Snas_1610 hypothetical protein
YP_004331266.1	PFAM: Protein of unknown function DUF2088; KEGG: gob:Gobs_1559 hypothetical protein
YP_004331267.1	KEGG: gob:Gobs_0783 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004331269.1	PFAM: Bacterial transcriptional activator domain; KEGG: cwo:Cwoe_4257 transcriptional regulator, SARP family
YP_004331270.1	PFAM: RNA-binding S4; KEGG: amd:AMED_0251 RNA-binding S4 domain-containing protein
YP_004331271.1	PFAM: Acyltransferase 3; KEGG: svi:Svir_21020 predicted acyltransferase
YP_004331272.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: cai:Caci_0731 lytic transglycosylase catalytic
YP_004331273.1	PFAM: Queuosine biosynthesis protein; KEGG: fri:FraEuI1c_5020 queuosine biosynthesis protein
YP_004331274.1	KEGG: amd:AMED_1538 short-chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004331275.1	TIGRFAM: Redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: fre:Franean1_1287 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR
YP_004331276.1	PFAM: NIPSNAP; KEGG: bra:BRADO4102 hypothetical protein
YP_004331277.1	KEGG: dre:100332356 GTPase, IMAP family member 4-like
YP_004331278.1	KEGG: gob:Gobs_4846 protein tyrosine/serine phosphatase
YP_004331279.1	KEGG: tbi:Tbis_3044 hypothetical protein
YP_004331281.1	PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: fre:Franean1_5603 acyl-CoA dehydrogenase domain-containing protein
YP_004331282.1	PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: fri:FraEuI1c_1232 acyl-CoA dehydrogenase domain-containing protein
YP_004331283.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: sen:SACE_1104 PadR family transcriptional regulator
YP_004331284.1	SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 2; KEGG: ami:Amir_0944 peptide chain release factor 2; HAMAP: Peptide chain release factor 2, bacterial; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor
YP_004331285.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division ATP-binding protein FtsE; KEGG: sen:SACE_1106 cell division ATP-binding protein; PFAM: ABC transporter-like
YP_004331286.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sen:SACE_1107  cell division membrane protein
YP_004331287.1	TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: svi:Svir_07720 SsrA-binding protein; PFAM: SsrA-binding protein
YP_004331288.1	PFAM: Amidohydrolase 2; KEGG: sen:SACE_1109 hypothetical protein
YP_004331289.1	PFAM: Major facilitator superfamily MFS-1; KEGG: art:Arth_2493 major facilitator transporter
YP_004331290.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: cai:Caci_6447 xanthine/uracil/vitamin C permease
YP_004331291.1	PFAM: Isochorismatase-like; KEGG: fri:FraEuI1c_3512 isochorismatase hydrolase
YP_004331292.1	PFAM: Isochorismatase-like; KEGG: cms:CMS_2996  isochorismatase hydrolase
YP_004331293.1	KEGG: met:M446_3691 allophanate hydrolase; PFAM: Amidase
YP_004331294.1	KEGG: nml:Namu_2025 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004331295.1	PFAM: Domain of unknown function DUF125, transmembrane; KEGG: mil:ML5_1718 hypothetical protein
YP_004331296.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004331297.1	PFAM: Uncharacterised protein family YphA; KEGG: svi:Svir_07800 DoxX protein
YP_004331298.1	KEGG: ami:Amir_0955 protein-disulfide isomerase-like protein
YP_004331299.1	KEGG: sti:Sthe_0743 peptidase S9 prolyl oligopeptidase active site domain protein
YP_004331300.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: amd:AMED_1482  transposase
YP_004331301.1	KEGG: fra:Francci3_0910 recombinase; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal
YP_004331303.1	KEGG: fra:Francci3_1684 resolvase-like protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal
YP_004331304.1	KEGG: msp:Mspyr1_54050 transcriptional regulator
YP_004331305.1	KEGG: cai:Caci_9004 hypothetical protein
YP_004331306.1	PFAM: Protein of unknown function DUF165; KEGG: kra:Krad_4383 protein of unknown function DUF165
YP_004331307.1	PFAM: Recombinase; KEGG: fre:Franean1_2733 recombinase
YP_004331308.1	PFAM: DNA methylase N-4/N-6; KEGG: cai:Caci_4087  RNA methylase
YP_004331309.1	KEGG: fre:Franean1_2543 hypothetical protein
YP_004331310.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: amd:AMED_0075 transposase
YP_004331311.1	KEGG: fre:Franean1_2740 hypothetical protein
YP_004331312.1	KEGG: fre:Franean1_2741 hypothetical protein
YP_004331313.1	KEGG: fre:Franean1_2742 hypothetical protein
YP_004331314.1	KEGG: fre:Franean1_2547 hypothetical protein
YP_004331315.1	KEGG: fra:Francci3_1693 type IV secretory pathway VirB4 components-like protein
YP_004331316.1	KEGG: cai:Caci_9005 hypothetical protein
YP_004331317.1	KEGG: fre:Franean1_2549 hypothetical protein
YP_004331318.1	KEGG: fra:Francci3_2715 hypothetical protein
YP_004331319.1	PFAM: NLP/P60; Lytic transglycosylase-like, catalytic; KEGG: amd:AMED_7298 NLP/P60 protein
YP_004331320.1	KEGG: vvy:VV2237 hypothetical protein
YP_004331321.1	manually curated; KEGG: ank:AnaeK_3342 hypothetical protein
YP_004331323.1	PFAM: Protein of unknown function DUF45; KEGG: fal:FRAAL4995 hypothetical protein
YP_004331324.1	KEGG: svi:Svir_09850 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A
YP_004331327.1	KEGG: msp:Mspyr1_55350 hypothetical protein
YP_004331328.1	KEGG: fre:Franean1_2565 hypothetical protein
YP_004331329.1	PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: mea:Mex_2p1281 hypothetical protein
YP_004331333.1	KEGG: kra:Krad_4685 hypothetical protein
YP_004331342.1	KEGG: rer:RER_24790 hypothetical protein
YP_004331343.1	KEGG: rci:RCIX1357 hypothetical protein
YP_004331344.1	KEGG: fre:Franean1_2833 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase
YP_004331345.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: fre:Franean1_2832 HAD family hydrolase
YP_004331346.1	KEGG: fre:Franean1_2831 hypothetical protein
YP_004331347.1	KEGG: fre:Franean1_2830 hypothetical protein
YP_004331348.1	KEGG: fre:Franean1_2829 hypothetical protein
YP_004331349.1	KEGG: fre:Franean1_2828 hypothetical protein
YP_004331350.1	PFAM: Inositol monophosphatase; KEGG: kfl:Kfla_6457 inositol monophosphatase
YP_004331351.1	KEGG: fre:Franean1_2827 aminoglycoside phosphotransferase; HAMAP: Thymidylate kinase; PFAM: Aminoglycoside phosphotransferase
YP_004331352.1	KEGG: sna:Snas_4860 NUDIX hydrolase
YP_004331353.1	KEGG: mav:MAV_1971 hypothetical protein
YP_004331354.1	PFAM: Integrase, catalytic core; KEGG: mav:MAV_3533 transposase
YP_004331355.1	KEGG: gbr:Gbro_2666 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004331358.1	KEGG: sen:SACE_5087 hypothetical protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004331359.1	KEGG: eba:ebA2494 hypothetical protein
YP_004331360.1	KEGG: rop:ROP_pKNR-00470 hypothetical protein
YP_004331361.1	KEGG: fri:FraEuI1c_0856 hypothetical protein
YP_004331362.1	KEGG: amd:AMED_8298 hypothetical protein
YP_004331363.1	KEGG: sco:SCO3449 hypothetical protein
YP_004331364.1	KEGG: sco:SCO3450 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331365.1	PFAM: Radical SAM; KEGG: stp:Strop_2597 radical SAM domain-containing protein
YP_004331366.1	PFAM: Methyltransferase type 11; KEGG: mbt:JTY_3791  transferase
YP_004331368.1	PFAM: Protein of unknown function DUF427; KEGG: nfa:nfa19250 hypothetical protein
YP_004331369.1	KEGG: sco:SCO3441 secreted protein
YP_004331370.1	PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; KEGG: mmi:MMAR_1618 multicopper oxidase, type 1, CueO
YP_004331371.1	PFAM: Glutaredoxin; KEGG: nca:Noca_2077 glutaredoxin
YP_004331372.1	PFAM: Protein of unknown function DUF427; KEGG: mmi:MMAR_0866 hypothetical protein
YP_004331373.1	KEGG: mbt:JTY_1688  transcriptional regulatory protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp
YP_004331374.1	KEGG: sco:SCO3443 pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, dimerisation; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004331375.1	PFAM: Methyltransferase type 11; KEGG: sco:SCO3459 hypothetical protein
YP_004331376.1	KEGG: amd:AMED_6852 hypothetical protein; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004331377.1	PFAM: CDP-alcohol phosphatidyltransferase
YP_004331378.1	PFAM: Phosphate transporter; KEGG: nde:NIDE3702  inorganic phosphate transporter
YP_004331380.1	KEGG: opr:Ocepr_0380 hypothetical protein
YP_004331381.1	KEGG: mmi:MMAR_1621 transcriptional regulatory protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp
YP_004331382.1	PFAM: Domain of unknown function DUF302; KEGG: sco:SCO3438 hypothetical protein
YP_004331383.1	KEGG: sco:SCO3437 integral membrane protein
YP_004331384.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: nha:Nham_4423 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004331385.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: pth:PTH_2396 transposase and inactivated derivatives
YP_004331386.1	PFAM: Heavy metal transport/detoxification protein; KEGG: mmg:MTBMA_c01180 cation transport ATPase
YP_004331387.1	KEGG: mlu:Mlut_06140 predicted transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004331388.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: nca:Noca_1643 hypothetical protein
YP_004331389.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ace:Acel_1610 major facilitator transporter
YP_004331390.1	KEGG: saq:Sare_4668 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004331391.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_5058 transcriptional regulator, TetR family
YP_004331392.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: sit:TM1040_0320 carboxymuconolactone decarboxylase
YP_004331393.1	KEGG: sen:SACE_2965 haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase
YP_004331394.1	KEGG: amd:AMED_8842 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-like protein, actinobacteria; PFAM: Glutaredoxin
YP_004331396.1	PFAM: Cytochrome c assembly protein, transmembrane domain; KEGG: mab:MAB_4275c hypothetical protein
YP_004331397.1	PFAM: Redoxin; KEGG: mbt:JTY_1690  lipoprotein
YP_004331398.1	PFAM: Protein of unknown function DUF156; KEGG: mbt:JTY_0992 hypothetical protein
YP_004331399.1	PFAM: Heavy metal transport/detoxification protein; KEGG: bae:BATR1942_14715 copper insertion chaperone and transporter component
YP_004331400.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mmi:MMAR_1431 cation transport ATPase, ZntA; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004331401.1	KEGG: mbt:JTY_1684 hypothetical membrane protein
YP_004331402.1	KEGG: ami:Amir_4079 conserved hypothetical membrane spanning protein
YP_004331403.1	KEGG: saq:Sare_4665  transmembrane anti-sigma factor
YP_004331404.1	KEGG: saq:Sare_4666 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004331405.1	KEGG: cai:Caci_3639 conserved hypothetical membrane spanning protein
YP_004331406.1	KEGG: nca:Noca_4944 hypothetical protein
YP_004331407.1	KEGG: nca:Noca_4945 regulatory protein, MerR; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004331408.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: kfl:Kfla_5042 phytanoyl-CoA dioxygenase
YP_004331409.1	PFAM: Alkylmercury lyase; KEGG: sna:Snas_5375 alkylmercury lyase
YP_004331410.1	KEGG: sep:SE0086 alkylmercury lyase; PFAM: Alkylmercury lyase
YP_004331411.1	KEGG: ach:Achl_4530 hypothetical protein
YP_004331412.1	KEGG: mmi:MMAR_p13 transcriptional repressor protein, MerR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004331413.1	TIGRFAM: Mercury reductase, MerA; KEGG: mil:ML5_4212 mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004331414.1	KEGG: nca:Noca_4945 regulatory protein, MerR; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR
YP_004331415.1	KEGG: hau:Haur_0682 NUDIX hydrolase
YP_004331416.1	KEGG: nca:Noca_4943 hypothetical protein
YP_004331417.1	KEGG: fra:Francci3_1851 hypothetical protein
YP_004331418.1	manually curated; KEGG: amd:AMED_8298 hypothetical protein
YP_004331419.1	KEGG: mil:ML5_1144 hypothetical protein
YP_004331420.1	KEGG: stp:Strop_1661 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004331422.1	PFAM: Nitroreductase-like; KEGG: gob:Gobs_3234 nitroreductase
YP_004331423.1	KEGG: bbr:BB1086  thiolase; PFAM: Thiolase, C-terminal; Beta-ketoacyl synthase, N-terminal
YP_004331424.1	KEGG: chl:Chy400_4095 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331425.1	KEGG: mva:Mvan_4407  GAF sensor protein; PFAM: GAF; SMART: GAF
YP_004331426.1	KEGG: sin:YN1551_2025 hypothetical protein
YP_004331427.1	TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: rrs:RoseRS_1138 LPPG:FO 2-phospho-L-lactate transferase; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052
YP_004331428.1	KEGG: sen:SACE_3707 branched-chain amino acid binding protein
YP_004331429.1	PFAM: Luciferase-like, subgroup; KEGG: swi:Swit_4272 luciferase protein
YP_004331430.1	KEGG: bra:BRADO6046 bifunctional enzyme with isomerase/decarboxylase activity; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004331431.1	PFAM: Ornithine cyclodeaminase/mu-crystallin; KEGG: swi:Swit_3083 ornithine cyclodeaminase
YP_004331432.1	TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: sro:Sros_7523 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase
YP_004331433.1	KEGG: swi:Swit_3086 gentisate 1 2-dioxygenase-like protein
YP_004331434.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN2584 LysR family transcriptional regulator
YP_004331435.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL0422  oxidoreductase
YP_004331436.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL0421  regulatory protein
YP_004331437.1	manually curated; KEGG: sco:SCO5945 transferase; PFAM: Gamma-glutamyltranspeptidase
YP_004331438.1	KEGG: cwo:Cwoe_2765 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004331439.1	KEGG: tcu:Tcur_0775 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331440.1	PFAM: Crotonase, core; KEGG: pla:Plav_1028 enoyl-CoA hydratase/isomerase
YP_004331441.1	PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: mva:Mvan_0394 acyl-CoA dehydrogenase domain-containing protein
YP_004331442.1	KEGG: amd:AMED_3864 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004331443.1	PFAM:  cyclase; KEGG: fre:Franean1_2682 cyclase protein
YP_004331444.1	KEGG: cwo:Cwoe_2765 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004331445.1	KEGG: mmi:MMAR_4757 acyl-CoA transferase; PFAM: CoA-transferase III
YP_004331446.1	KEGG: fre:Franean1_4505 luciferase protein; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like, subgroup
YP_004331448.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: fri:FraEuI1c_3097 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004331449.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3096 binding-protein-dependent transport systems inner membrane component
YP_004331450.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL0338 ABC transporter oligopeptide permease
YP_004331451.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fal:FRAAL0339 ABC transporter oligopeptide binding protein
YP_004331452.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: amd:AMED_6949 alpha/beta hydrolase
YP_004331453.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_4114 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004331454.1	KEGG: cwo:Cwoe_4297 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004331455.1	KEGG: mau:Micau_3966 MoeA domain-containing protein domain I and II; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; SMART: Molybdopterin binding
YP_004331456.1	PFAM: Nitroreductase-like; KEGG: fri:FraEuI1c_5167 nitroreductase
YP_004331457.1	KEGG: mav:MAV_3101 oxidoreductase, short chain dehydrogenase/reductase protein; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004331459.1	KEGG: nml:Namu_0044 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004331460.1	KEGG: pla:Plav_1165 cyclohexanone monooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
YP_004331461.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; HAMAP: GTP cyclohydrolase II, RibA; 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; Riboflavin biosynthesis protein RibBA; KEGG: amd:AMED_2773 GTP cyclohydrolase II/3,4-dihydroxy 2-butanone 4-phosphate synthase; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA
YP_004331462.1	KEGG: mmi:MMAR_0240 monoooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
YP_004331463.1	PFAM: Luciferase-like, subgroup; KEGG: mmi:MMAR_0308 monooxygenase
YP_004331464.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: fri:FraEuI1c_5596 SMP-30/gluconolaconase/LRE-like region-containing protein
YP_004331465.1	PFAM: Luciferase-like, subgroup; KEGG: pla:Plav_0210 luciferase protein
YP_004331466.1	manually curated; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: mrb:Mrub_0282 LacI family transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004331467.1	TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted; KEGG: mab:MAB_0995 hypothetical protein
YP_004331468.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rer:RER_50580 TetR family transcriptional regulator
YP_004331470.1	PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: rop:ROP_17970  oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_004331471.1	KEGG: fre:Franean1_6244 epocide hydrolase domain-containing protein; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1
YP_004331472.1	KEGG: fra:Francci3_0380 ABC-type branched-chain amino acid transport systems periplasmic component-like protein
YP_004331473.1	PFAM: ABC transporter-like; ABC transporter permease; KEGG: amd:AMED_7155 fused ATPase and permease components of ABC-type branched-chain amino acid transport system; SMART: ATPase, AAA+ type, core
YP_004331474.1	KEGG: fal:FRAAL5036 high-affinity branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004331475.1	KEGG: mmi:MMAR_1575 oxidoreductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup
YP_004331476.1	PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: sth:STH2357 acyl-CoA dehydrogenase, short-chain specific
YP_004331477.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: mav:MAV_5258 hypothetical protein
YP_004331478.1	KEGG: mpa:MAP4297c hypothetical protein
YP_004331479.1	KEGG: msm:MSMEG_0526 oxidoreductase, GMC family protein; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal
YP_004331480.1	PFAM: Aldehyde dehydrogenase domain; KEGG: tcu:Tcur_2494 betaine-aldehyde dehydrogenase
YP_004331481.1	KEGG: aau:AAur_pTC20119 hypothetical protein
YP_004331482.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004331483.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sgr:SGR_550 major facilitator superfamily permease
YP_004331484.1	PFAM: Major facilitator superfamily MFS-1; KEGG: scb:SCAB_1721 transmembrane transport protein
YP_004331485.1	KEGG: axy:AXYL_04232 cupin domain-containing protein 5
YP_004331486.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: scb:SCAB_1731 TetR family regulator
YP_004331487.1	PFAM: Integrase, catalytic core; KEGG: sen:SACE_5133 IS630 family transposase
YP_004331488.1	TIGRFAM: CocE/NonD hydrolase; PFAM: Peptidase S15/CocE/NonD, C-terminal; Peptidase S9/S15; KEGG: rxy:Rxyl_2383 peptidase S15; SMART: Peptidase S15/CocE/NonD, C-terminal
YP_004331489.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: mxa:MXAN_0158 alpha/beta fold family hydrolase
YP_004331490.1	PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; Alpha/beta hydrolase fold-1; KEGG: sen:SACE_1611 exported protease
YP_004331491.1	PFAM: Integrase, catalytic core; KEGG: sen:SACE_5133 IS630 family transposase
YP_004331492.1	KEGG: spu:373354 histone H1-beta
YP_004331494.1	KEGG: gob:Gobs_3806 threonyl/alanyl tRNA synthetase SAD; PFAM: Threonyl/alanyl tRNA synthetase, SAD; Alanyl-tRNA synthetase, class IIc, N-terminal; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_004331495.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: stp:Strop_2558 deaminase-reductase domain-containing protein
YP_004331496.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tcu:Tcur_2744 CDP-alcohol phosphatidyltransferase
YP_004331497.1	PFAM: FAD dependent oxidoreductase; KEGG: tcu:Tcur_2745  dehydrogenase
YP_004331498.1	KEGG: mil:ML5_4784 6-pyruvoyl tetrahydropterin synthase
YP_004331499.1	PFAM: Glycosyl transferase, group 1; KEGG: sma:SAV_1795 glycosyl transferase
YP_004331500.1	KEGG: tcu:Tcur_2749 hypothetical protein
YP_004331501.1	PFAM: Sulfatase; KEGG: mil:ML5_1364 sulfatase
YP_004331502.1	KEGG: rer:RER_50600 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004331503.1	TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: req:REQ_44720 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004331504.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_4222 extracellular solute-binding protein
YP_004331505.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mau:Micau_1726 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004331506.1	KEGG: reu:Reut_B5781 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004331507.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: sco:SCO6309 LysR family transcriptional regulator
YP_004331508.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sti:Sthe_0680 extracellular solute-binding protein family 5
YP_004331509.1	KEGG: lch:Lcho_3754 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase
YP_004331510.1	HAMAP: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; KEGG: cti:RALTA_B1696 fructose 1,6-bisphosphatase (RuBisCO operon); PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase
YP_004331511.1	PFAM: Amidase; KEGG: rha:RHA1_ro02850 indoleacetamide hydrolase
YP_004331512.1	KEGG: fra:Francci3_1236 hypothetical protein
YP_004331513.1	PFAM: Ferric-uptake regulator; KEGG: stp:Strop_2053 ferric-uptake regulator
YP_004331514.1	PFAM: Ferritin/Dps protein; KEGG: nfa:nfa13000 hypothetical protein
YP_004331515.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: kra:Krad_4434 transcriptional regulator
YP_004331516.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rop:ROP_50640  MFS transporter
YP_004331517.1	KEGG: ace:Acel_0486 hypothetical protein; HAMAP: Protein of unknown function DUF167; PFAM: Protein of unknown function DUF167
YP_004331518.1	KEGG: fal:FRAAL1747 hypothetical protein
YP_004331520.1	KEGG: cre:CHLREDRAFT_205991 secreted protease and protease inhibitor
YP_004331521.1	PFAM: Uncharacterised protein family UPF0145; KEGG: cai:Caci_1282 hypothetical protein
YP_004331522.1	PFAM: Uncharacterised protein family UPF0145; KEGG: cai:Caci_1283 protein of unknown function DUF74
YP_004331523.1	KEGG: amd:AMED_1338 hypothetical protein
YP_004331524.1	KEGG: abc:ACICU_01880 AraC-type DNA-binding domain-containing protein; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004331525.1	PFAM: ThiJ/PfpI; KEGG: cai:Caci_1157 ThiJ/PfpI domain protein
YP_004331526.1	PFAM: Protein of unknown function DUF1486; KEGG: reh:H16_B1338 hypothetical protein
YP_004331527.1	PFAM: Protein of unknown function DUF1486; KEGG: bur:Bcep18194_B3047 hypothetical protein
YP_004331528.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: rme:Rmet_1316 methane/phenol/toluene hydroxylase
YP_004331529.1	PFAM: Toluene-4-monooxygenase system B; KEGG: fra:Francci3_0212 toluene-4-monooxygenase system B
YP_004331530.1	PFAM: Monooxygenase component MmoB/DmpM; KEGG: bbt:BBta_1595 toluene-4-monooxygenase system protein D
YP_004331531.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5675 methane/phenol/toluene hydroxylase
YP_004331532.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bts:Btus_2067 Rieske (2Fe-2S) iron-sulfur domain protein
YP_004331533.1	KEGG: nca:Noca_4282 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004331534.1	PFAM: Ribosomal protein L22/L17; KEGG: sgr:SGR_2829 50S ribosomal protein L22
YP_004331535.1	PFAM: Domain of unknown function DUF59; KEGG: tpr:Tpau_2504 protein of unknown function DUF59
YP_004331536.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nca:Noca_1187 antibiotic biosynthesis monooxygenase
YP_004331537.1	KEGG: kfl:Kfla_5298 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004331538.1	KEGG: amd:AMED_7526 integral membrane protein
YP_004331539.1	PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; KEGG: fri:FraEuI1c_3679 phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain
YP_004331540.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: kfl:Kfla_0918 fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_004331541.1	KEGG: rfr:Rfer_2478 thiamine pyrophosphate enzyme-like TPP binding protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004331542.1	KEGG: aau:AAur_pTC20145 nitrile hydratase b-subunit
YP_004331543.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: aau:AAur_pTC20146 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004331544.1	KEGG: aau:AAur_pTC20147 cobalt-containing nitrile hydratase beta subunit
YP_004331545.1	PFAM: Amidase; KEGG: gob:Gobs_0303 amidase
YP_004331546.1	KEGG: nfa:nfa48290 hypothetical protein
YP_004331547.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mjl:Mjls_1024 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004331548.1	KEGG: amd:AMED_0110 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331549.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: msv:Mesil_2128 alpha/beta hydrolase fold protein
YP_004331550.1	KEGG: rlt:Rleg2_6079 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004331551.1	KEGG: sti:Sthe_2868 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004331552.1	KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004331553.1	KEGG: tcu:Tcur_4235 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004331554.1	KEGG: sco:SCO1119 transcription regulator AsnC; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004331555.1	KEGG: amd:AMED_5858 indolepyruvate ferredoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain
YP_004331556.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: mes:Meso_0482 fumarate reductase/succinate dehydrogenase flavoprotein-like
YP_004331557.1	KEGG: nml:Namu_2913 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004331558.1	PFAM: Endoribonuclease L-PSP; KEGG: nml:Namu_2914 endoribonuclease L-PSP
YP_004331559.1	PFAM: FAD linked oxidase, N-terminal; KEGG: nml:Namu_2915 FAD linked oxidase domain-containing protein
YP_004331560.1	PFAM: Cupin 2, conserved barrel; KEGG: fri:FraEuI1c_3948 hypothetical protein
YP_004331561.1	KEGG: fri:FraEuI1c_3435 hypothetical protein
YP_004331562.1	PFAM: Luciferase-like, subgroup; KEGG: kfl:Kfla_3971 luciferase-like monooxygenase
YP_004331563.1	PFAM: Limonene-1,2-epoxide hydrolase; KEGG: rop:ROP_24950 hypothetical protein
YP_004331564.1	PFAM: Cytochrome P450; KEGG: jan:Jann_2272 cytochrome P450-like
YP_004331565.1	KEGG: fra:Francci3_2659 luciferase-like protein; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG2516, predicted; PFAM: Luciferase-like, subgroup
YP_004331566.1	KEGG: ccu:Ccur_13640 flavocytochrome c; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
YP_004331567.1	PFAM: Luciferase-like, subgroup; KEGG: tcu:Tcur_2704 luciferase-like monooxygenase
YP_004331568.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: swi:Swit_0294 oxidoreductase domain-containing protein
YP_004331569.1	PFAM: Cytochrome P450; KEGG: jan:Jann_2272 cytochrome P450-like
YP_004331570.1	PFAM: Ferredoxin soy-like; KEGG: sgr:SGR_263  ferredoxin
YP_004331571.1	KEGG: tcu:Tcur_3385 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004331572.1	KEGG: rha:RHA1_ro00299 hypothetical protein; TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain
YP_004331573.1	KEGG: sco:SCO0466 AraC family transcription regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004331574.1	KEGG: jan:Jann_2274 amidohydrolase 2; PFAM: Amidohydrolase 2
YP_004331575.1	PFAM: Amidohydrolase 1; KEGG: jan:Jann_2275 amidohydrolase
YP_004331576.1	KEGG: jan:Jann_2271 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004331577.1	PFAM: Transcription regulator TrmB, N-terminal; KEGG: sro:Sros_2039 helix-turn-helix family DUF118
YP_004331578.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rxy:Rxyl_2414 major facilitator transporter
YP_004331579.1	KEGG: jan:Jann_2270 hypothetical protein
YP_004331580.1	KEGG: rha:RHA1_ro02179 hypothetical protein
YP_004331581.1	TIGRFAM: Benzoyl-CoA oxygenase, B subunit; KEGG: amd:AMED_8610 benzoyl-CoA oxygenase component B
YP_004331582.1	KEGG: amd:AMED_8611 enoyl-CoA hydratase; TIGRFAM: Benzoyl-CoA-dihydrodiol lyase; PFAM: Crotonase, core
YP_004331583.1	TIGRFAM: Benzoate-CoA ligase; KEGG: amd:AMED_8609 benzoate-CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331584.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: gbr:Gbro_3823 alcohol dehydrogenase GroES domain-containing protein
YP_004331585.1	KEGG: sti:Sthe_2861 ATPase associated with various cellular activities AAA_5; PFAM: ATPase, AAA-5; vWA containing CoxE-like; SMART: ATPase, AAA+ type, core
YP_004331586.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: amd:AMED_7014 LmbE family protein
YP_004331587.1	KEGG: amd:AMED_7729 cytochrome c oxidase subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_004331588.1	TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: sen:SACE_1188 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; Amino acid-binding ACT
YP_004331589.1	KEGG: amd:AMED_7727 hypothetical protein
YP_004331590.1	KEGG: msp:Mspyr1_51770 hypothetical protein
YP_004331591.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: msp:Mspyr1_51780 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004331592.1	KEGG: msm:MSMEG_0377 nitrile hydratase
YP_004331593.1	KEGG: mva:Mvan_5828 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004331594.1	SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: ami:Amir_0995 helicase C2
YP_004331595.1	KEGG: fri:FraEuI1c_5196 thioesterase superfamily protein
YP_004331596.1	PFAM: Isochorismatase-like; KEGG: ami:Amir_1003 isochorismatase hydrolase
YP_004331597.1	TIGRFAM: Nicotinate phosphoribosyltransferase KEGG: svi:Svir_29240  nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like
YP_004331598.1	KEGG: ami:Amir_1005 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core
YP_004331599.1	PFAM: Domain of unknown function DUF2017; KEGG: svi:Svir_29220 protein of unknown function (DUF2017)
YP_004331600.1	TIGRFAM: Selenoprotein, Rdx type; KEGG: rha:RHA1_ro05355 hypothetical protein
YP_004331601.1	KEGG: gob:Gobs_1356 Mov34/MPN/PAD-1 family protein; PFAM: Mov34/MPN/PAD-1; SMART: Mov34/MPN/PAD-1
YP_004331602.1	PFAM: ThiamineS; KEGG: tpr:Tpau_1290 thiamineS protein
YP_004331603.1	TIGRFAM: Cysteine synthase K/M; KEGG: sen:SACE_1206 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004331604.1	PFAM: Peptidase S54, rhomboid domain; KEGG: amd:AMED_7707 hypothetical protein
YP_004331605.1	PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: mbo:Mb1373 glutamate racemase
YP_004331606.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004331607.1	KEGG: gob:Gobs_5030  integral membrane protein
YP_004331608.1	KEGG: kra:Krad_0154  integral membrane protein
YP_004331609.1	KEGG: sen:SACE_1210 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004331610.1	KEGG: ami:Amir_1019 hypothetical protein
YP_004331611.1	KEGG: sen:SACE_1212 ribonuclease PH; manually curated; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; HAMAP: Ribonuclease phosphorolytic, bacterial-type
YP_004331612.1	PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase; KEGG: sen:SACE_1213 Ham1-like protein
YP_004331613.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: tcu:Tcur_3347 3-oxoadipate enol-lactonase
YP_004331614.1	PFAM: SNARE associated Golgi protein; KEGG: amd:AMED_2654 hypothetical protein
YP_004331615.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: mjl:Mjls_3657 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004331616.1	KEGG: ami:Amir_1029 hypothetical protein
YP_004331617.1	KEGG: rop:ROP_61090 ferredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004331618.1	KEGG: svi:Svir_01790 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3
YP_004331619.1	KEGG: sen:SACE_4196 anti-sigma factor
YP_004331621.1	PFAM: Transcription factor WhiB; KEGG: ami:Amir_6542 transcription factor WhiB
YP_004331622.1	KEGG: gob:Gobs_2116 anti-sigma-factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS
YP_004331623.1	KEGG: sen:SACE_3551 selenocysteine-specific translation elongation factor; TIGRFAM: Translation elongation factor, selenocysteine-specific; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor SelB, winged helix, type 3
YP_004331624.1	TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: sro:Sros_3738 L-seryl-tRNA(sec) selenium transferase; PFAM: Pyridoxal phosphate-dependent transferase
YP_004331625.1	TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase, class I; KEGG: msm:MSMEG_1852 selenide, water dikinase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal
YP_004331626.1	PFAM: Transposase, IS4-like; KEGG: sen:SACE_4676 IS402-like transposase
YP_004331627.1	PFAM: Methyltransferase type 12; KEGG: fal:FRAAL3697  methyltransferase
YP_004331628.1	PFAM: Amidase; KEGG: saq:Sare_0864 amidase
YP_004331629.1	KEGG: gob:Gobs_2116 anti-sigma-factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS
YP_004331630.1	KEGG: cme:CMI243C plastid terminal oxidase
YP_004331631.1	PFAM: ABC transporter-like; KEGG: fri:FraEuI1c_6806 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004331632.1	KEGG: fri:FraEuI1c_6805 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004331633.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: fre:Franean1_6492 hypothetical protein
YP_004331634.1	KEGG: amd:AMED_3094 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004331635.1	KEGG: bmd:BMD_5005 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004331636.1	KEGG: tro:trd_1682 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment
YP_004331637.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; KEGG: rop:ROP_29700 acetyl-CoA carboxylase biotin carboxylase subunit; SMART: Biotin carboxylase, C-terminal
YP_004331638.1	KEGG: rop:ROP_29690  carboxyltransferase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase
YP_004331639.1	KEGG: rop:ROP_29760 hypothetical protein
YP_004331640.1	KEGG: rop:ROP_29750 hypothetical protein
YP_004331641.1	KEGG: rop:ROP_29740  fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331642.1	KEGG: rop:ROP_29730 hypothetical protein
YP_004331643.1	KEGG: rop:ROP_29720 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain
YP_004331644.1	TIGRFAM: Thiolase; KEGG: fri:FraEuI1c_4549 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004331645.1	KEGG: nml:Namu_2349 protein tyrosine/serine phosphatase
YP_004331646.1	PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: nca:Noca_2395 peptidase S1 and S6, chymotrypsin/Hap
YP_004331647.1	KEGG: amd:AMED_0311 NADPH-dependent 2,4-dienoyl-CoA reductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004331648.1	PFAM: Helix-turn-helix, HxlR type; KEGG: tcu:Tcur_0206 HxlR family transcriptional regulator
YP_004331649.1	PFAM: Domain of unknown function DUF125, transmembrane; KEGG: bcv:Bcav_2681 protein of unknown function DUF125 transmembrane
YP_004331650.1	KEGG: fre:Franean1_6494 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004331651.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: amd:AMED_1482  transposase
YP_004331652.1	TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: CinA, C-terminal; Molybdopterin binding; KEGG: mkm:Mkms_2751 competence damage-inducible protein A; SMART: Molybdopterin binding
YP_004331653.1	KEGG: mtf:TBFG_13542 PE-PGRS family protein
YP_004331654.1	KEGG: amd:AMED_0390 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004331655.1	KEGG: tcu:Tcur_2458 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding
YP_004331656.1	TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; KEGG: amd:AMED_1860 protocatechuate 3,4-dioxygenase, beta subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal
YP_004331657.1	TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; KEGG: svi:Svir_13020 protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal
YP_004331658.1	PFAM: GtrA-like protein; KEGG: sen:SACE_6097  glycosyl transferase
YP_004331659.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO0241 transcriptional regulator
YP_004331660.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: kfl:Kfla_5811 short-chain dehydrogenase/reductase SDR
YP_004331661.1	KEGG: fal:FRAAL3507  acetyl-CoA hydrolase/transferase
YP_004331662.1	KEGG: cmi:CMM_2121  glutathione S-transferase; PFAM: Glutathione S-transferase, C-terminal
YP_004331663.1	PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: svi:Svir_01720 beta-glucosidase-like glycosyl hydrolase
YP_004331664.1	SMART: Biotin carboxylase, C-terminal; manually curated; KEGG: gob:Gobs_2423 carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; Carboxyl transferase
YP_004331665.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:blr2255 hypothetical protein
YP_004331667.1	KEGG: fri:FraEuI1c_6672 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004331668.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL3816 hypothetical protein
YP_004331669.1	PFAM: Polyketide cyclase/dehydrase; KEGG: kfl:Kfla_3820 hypothetical protein
YP_004331670.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL3795 TetR family transcriptional regulator
YP_004331671.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sro:Sros_7073 arabinose efflux permease-like protein
YP_004331672.1	PFAM: Excalibur calcium-binding domain; KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA
YP_004331673.1	KEGG: kfl:Kfla_5151 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; TIGRFAM: F420-binding domain, PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004331674.1	KEGG: fra:Francci3_2843 diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: Phosphofructokinase domain
YP_004331675.1	KEGG: amd:AMED_1324 hypothetical protein
YP_004331676.1	PFAM: Membrane protein of unknown function; SNARE associated Golgi protein; KEGG: amd:AMED_1322 hypothetical protein
YP_004331677.1	KEGG: gob:Gobs_4160 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331678.1	KEGG: bpe:BP0285  acetyl esterase
YP_004331679.1	KEGG: svi:Svir_04780 hypothetical protein
YP_004331680.1	KEGG: nml:Namu_0044 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004331681.1	KEGG: sen:SACE_6340 trypsin-like serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF
YP_004331682.1	KEGG: rop:ROP_03550 hypothetical protein
YP_004331683.1	KEGG: mbt:JTY_1895 hypothetical protein; TIGRFAM: F420-binding domain, PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004331684.1	PFAM: Uncharacterised protein family UPF0016; KEGG: ami:Amir_2448 protein of unknown function UPF0016
YP_004331685.1	KEGG: sds:SDEG_1595 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331686.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_0343 TetR-family protein transcriptional regulator
YP_004331687.1	KEGG: fal:FRAAL1666  acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004331688.1	KEGG: afo:Afer_1027 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331689.1	PFAM: Aminoglycoside phosphotransferase; KEGG: hne:HNE_1989 phosphotransferase enzyme family protein
YP_004331690.1	KEGG: mva:Mvan_3374 aminoglycoside phosphotransferase
YP_004331691.1	KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA
YP_004331692.1	KEGG: mva:Mvan_0346 carboxyl transferase; PFAM: Carboxyl transferase
YP_004331693.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: mva:Mvan_0345 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal
YP_004331694.1	KEGG: rpt:Rpal_3720 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331695.1	PFAM: Crotonase, core; KEGG: aac:Aaci_0815 enoyl-CoA hydratase/isomerase
YP_004331696.1	KEGG: rop:ROP_46660  acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331697.1	PFAM: Crotonase, core; KEGG: mjl:Mjls_3219 enoyl-CoA hydratase/isomerase
YP_004331698.1	KEGG: mgi:Mflv_4597 wyosine base formation; TIGRFAM: Conserved hypothetical protein CHP03084; Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Wyosine base formation
YP_004331699.1	PFAM: Protein of unknown function DUF1446; KEGG: mgi:Mflv_4598 hypothetical protein
YP_004331700.1	KEGG: fre:Franean1_3510 adenylate kinase
YP_004331701.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: sgr:SGR_2246  hydrolase
YP_004331702.1	KEGG: svi:Svir_33240 hypothetical protein
YP_004331703.1	KEGG: bfa:Bfae_09180 cell envelope-related function transcriptional attenuator common domain; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator
YP_004331704.1	KEGG: afw:Anae109_2271 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00268; PFAM: Asparagine synthase
YP_004331705.1	PFAM: Uncharacterised protein family UPF0272; Phosphoribosylaminoimidazole carboxylase, core; KEGG: cai:Caci_4916 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_004331706.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: gct:GC56T3_1846 OsmC family protein
YP_004331708.1	KEGG: cwo:Cwoe_0088 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA
YP_004331709.1	KEGG: nca:Noca_4838 hypothetical protein
YP_004331710.1	PFAM: Lyase 1, N-terminal; KEGG: nca:Noca_4818 fumarate lyase
YP_004331711.1	KEGG: nca:Noca_4819 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004331712.1	TIGRFAM: Argininosuccinate lyase; KEGG: nca:Noca_4820 argininosuccinate lyase; PFAM: Lyase 1, N-terminal
YP_004331713.1	KEGG: chl:Chy400_3865 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004331714.1	KEGG: bge:BC1002_5635 hypothetical protein
YP_004331716.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: azc:AZC_0070  histone acetyltransferase
YP_004331717.1	KEGG: tbi:Tbis_2669 winged helix family transcriptional regulator ATPase; PFAM: Signal transduction response regulator, C-terminal; Bacterial transcriptional activator domain; ATPase domain, prokaryote; Tetratricopeptide TPR-1; SMART: Signal transduction response regulator, C-terminal; Tetratricopeptide repeat
YP_004331718.1	KEGG: gob:Gobs_2618 hypothetical protein
YP_004331719.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: pva:Pvag_pPag20175  nitrile hydratase alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004331720.1	KEGG: rpb:RPB_2705 nitrile hydratase
YP_004331721.1	KEGG: nml:Namu_5382 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004331722.1	KEGG: sen:SACE_3300 hypothetical protein
YP_004331723.1	KEGG: gob:Gobs_0281  phytochrome sensor protein; PFAM: Signal transduction response regulator, C-terminal; GAF; SMART: Signal transduction response regulator, C-terminal
YP_004331724.1	KEGG: sen:SACE_2381 response regulator, two-component system; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004331725.1	KEGG: bph:Bphy_6084 XRE family transcriptional regulator; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004331726.1	PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; KEGG: bcv:Bcav_4029 2-dehydropantoate 2-reductase
YP_004331727.1	KEGG: kra:Krad_0790 hypothetical protein
YP_004331729.1	KEGG: sen:SACE_5910 hypothetical protein
YP_004331730.1	KEGG: sen:SACE_5909 hypothetical protein
YP_004331731.1	PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: sen:SACE_1782 protein of unknown function DUF395, YeeE/YedE
YP_004331733.1	TIGRFAM: Phosphofructokinase, pyrophosphate dependent; HAMAP: Phosphofructokinase; KEGG: sco:SCO2119 6-phosphofructokinase; PFAM: Phosphofructokinase domain
YP_004331734.1	HAMAP: Peptidase S14, ClpP; KEGG: svi:Svir_12180 ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: Peptidase S14, ClpP
YP_004331735.1	KEGG: stp:Strop_3944 hypothetical protein
YP_004331736.1	KEGG: svi:Svir_27870 hypothetical protein
YP_004331737.1	KEGG: svi:Svir_27870 hypothetical protein
YP_004331738.1	PFAM: Pentapeptide repeat; KEGG: sro:Sros_5479 hypothetical protein
YP_004331739.1	KEGG: sma:SAV_7424 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331740.1	KEGG: cwo:Cwoe_3822 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004331741.1	PFAM: Protein of unknown function DUF477; KEGG: gob:Gobs_0486 hypothetical protein
YP_004331742.1	KEGG: sen:SACE_1164 hypothetical protein
YP_004331743.1	KEGG: kfl:Kfla_1656 hypothetical protein
YP_004331744.1	KEGG: fre:Franean1_7244 hypothetical protein
YP_004331745.1	KEGG: ret:RHE_CH03437 hypothetical protein
YP_004331746.1	PFAM: Cobalt transporter subunit CbtB, KEGG: bgf:BC1003_4412 hypothetical protein
YP_004331747.1	PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; Molybdopterin oxidoreductase; KEGG: rsl:RPSI07_2642  molybdopterin oxidoreductase; nitrate reductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_004331748.1	KEGG: rop:ROP_58480  AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004331749.1	PFAM: Domain of unknown function DUF305; KEGG: ami:Amir_6160 protein of unknown function DUF305
YP_004331750.1	KEGG: svi:Svir_29990 hypothetical protein
YP_004331751.1	KEGG: sen:SACE_6300 arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic
YP_004331752.1	TIGRFAM: Diaminopimelate decarboxylase; KEGG: sen:SACE_6299 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_004331753.1	PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: amd:AMED_7795 homoserine dehydrogenase
YP_004331754.1	TIGRFAM: Threonine synthase; KEGG: amd:AMED_7794 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004331755.1	TIGRFAM: Homoserine kinase; HAMAP: Homoserine kinase; KEGG: sen:SACE_6296 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal
YP_004331756.1	TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: gob:Gobs_4150 transcription termination factor Rho; SMART: Rho termination factor, N-terminal; Cold shock protein; ATPase, AAA+ type, core
YP_004331757.1	TIGRFAM: Ribosomal protein L31; HAMAP: Ribosomal protein L31; KEGG: ami:Amir_6151 ribosomal protein L31; PFAM: Ribosomal protein L31
YP_004331758.1	SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: ami:Amir_6150 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor
YP_004331759.1	KEGG: sen:SACE_6291  methyltransferase; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small
YP_004331760.1	KEGG: ami:Amir_6146 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal
YP_004331761.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tcu:Tcur_4146 TetR family transcriptional regulator
YP_004331762.1	KEGG: fal:FRAAL5942 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004331763.1	PFAM: Glycosyl transferase, family 4; KEGG: sen:SACE_6288 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
YP_004331765.1	KEGG: srt:Srot_0692 ATP synthase I
YP_004331766.1	TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATPase, F0 complex, subunit A; KEGG: srt:Srot_0693 ATP synthase F0 subunit A; PFAM: ATPase, F0 complex, subunit A
YP_004331767.1	TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: ace:Acel_0648 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C
YP_004331768.1	TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: amd:AMED_7779 F-type H+-transporting ATPase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast
YP_004331769.1	TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: mjl:Mjls_3865 F0F1 ATP synthase subunit delta; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast
YP_004331770.1	TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: msp:Mspyr1_17470 ATP synthase, F1 delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit
YP_004331771.1	TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: msm:MSMEG_4938 F0F1 ATP synthase subunit alpha; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_004331772.1	TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATPase, F1 complex, gamma subunit; KEGG: msm:MSMEG_4937 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit
YP_004331773.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: ami:Amir_6136 F0F1 ATP synthase subunit beta; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_004331774.1	TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: svi:Svir_29540 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal
YP_004331775.1	PFAM: Protein of unknown function DUF2550; KEGG: ami:Amir_6134 hypothetical protein
YP_004331776.1	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: fal:FRAAL5927  adenosylcobalamin-dependent diol dehydratase gamma subunit; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type
YP_004331777.1	PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: ami:Amir_6132 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_004331778.1	PFAM: Domain of unknown function DUF1206; KEGG: gob:Gobs_3823 hypothetical protein
YP_004331779.1	TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: gob:Gobs_4128 methylmalonyl-CoA mutase large subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding
YP_004331780.1	PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; KEGG: sen:SACE_3078 hypothetical protein
YP_004331781.1	TIGRFAM: Ectoine/hydroxyEctoine ABC transporter solute-binding protein; Twin-arginine translocation pathway, signal sequence; PFAM: Extracellular solute-binding protein, family 3; KEGG: svi:Svir_29490 ectoine/hydroxyectoine ABC transporter solute-binding protein; SMART: Extracellular solute-binding protein, family 3
YP_004331782.1	KEGG: svi:Svir_29480 amino acid ABC transporter membrane protein; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease EhuC; Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004331783.1	KEGG: svi:Svir_29470 amino acid ABC transporter membrane protein; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, permease EhuD; Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004331784.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; KEGG: svi:Svir_29460 amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_004331785.1	KEGG: svi:Svir_29490 ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004331786.1	PFAM: Crotonase, core; KEGG: svi:Svir_29450 enoyl-CoA hydratase/carnithine racemase
YP_004331787.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nda:Ndas_0675 transcriptional regulator, TetR family
YP_004331788.1	KEGG: tbi:Tbis_2110 cytochrome P450; PFAM: Cytochrome P450
YP_004331789.1	PFAM: Methyltransferase type 11; KEGG: mav:MAV_2728 hypothetical protein
YP_004331790.1	KEGG: sen:SACE_3243 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004331791.1	KEGG: msp:Mspyr1_16060 NUDIX family protein; manually curated; PFAM: NUDIX hydrolase domain
YP_004331792.1	manually curated; KEGG: svi:Svir_36430 predicted transcriptional regulator
YP_004331793.1	PFAM: Amidohydrolase 1; KEGG: gob:Gobs_2674 amidohydrolase
YP_004331794.1	KEGG: fri:FraEuI1c_4888 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004331795.1	KEGG: ami:Amir_6124 hypothetical protein; HAMAP: Uncharacterised protein family UPF0286; PFAM: Uncharacterised protein family UPF0286
YP_004331796.1	KEGG: gob:Gobs_1833 alcohol dehydrogenase zinc-binding domain-containing protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_004331797.1	PFAM: Aldehyde dehydrogenase domain; KEGG: sen:SACE_6249 aldehyde dehydrogenase (NAD+)
YP_004331798.1	KEGG: amd:AMED_7745 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_004331799.1	KEGG: amd:AMED_7733 hypothetical protein
YP_004331800.1	TIGRFAM: DivIVA domain; KEGG: rer:RER_38960 hypothetical protein
YP_004331801.1	TIGRFAM: Crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: kfl:Kfla_4989 crotonyl-CoA reductase; SMART: Polyketide synthase, enoylreductase
YP_004331802.1	KEGG: req:REQ_17690 glyoxalase protein; TIGRFAM: Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004331803.1	TIGRFAM: Thiolase; KEGG: ami:Amir_6104 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004331804.1	KEGG: nca:Noca_1798 LAO/AO transport system ATPase; TIGRFAM: ArgK protein; PFAM: ArgK protein
YP_004331805.1	KEGG: tbi:Tbis_0340 tetratricopeptide domain-containing protein
YP_004331806.1	KEGG: sen:SACE_6221 MarR-transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004331807.1	PFAM: Protein of unknown function DUF77; KEGG: ami:Amir_6081 protein of unknown function DUF77
YP_004331808.1	PFAM: Integrase, catalytic core; KEGG: mtb:TBMG_03231 transposase
YP_004331810.1	PFAM: Thioredoxin domain; KEGG: sen:SACE_6218 thioredoxin
YP_004331811.1	KEGG: ami:Amir_6076 metalloprotease-like protein
YP_004331812.1	PFAM: Protein of unknown function DUF2029; KEGG: rxy:Rxyl_2872 hypothetical protein
YP_004331813.1	KEGG: ami:Amir_6075 1,4-alpha-glucan branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal; TIGRFAM: 1,4-alpha-glucan-branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_004331814.1	KEGG: cur:cur_1817  Fe-S oxidoreductase
YP_004331815.1	KEGG: fra:Francci3_4183 sigma-24; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004331816.1	PFAM: Aminoglycoside phosphotransferase; KEGG: rop:ROP_61010  maltokinase
YP_004331817.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; KEGG: ami:Amir_6073 trehalose synthase; PFAM: Glycosyl hydrolase, family 13, catalytic domain
YP_004331818.1	KEGG: ami:Amir_6072 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_004331819.1	TIGRFAM: Alpha-glucan phosphorylase; KEGG: ami:Amir_6071 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35
YP_004331820.1	TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, KEGG: sma:SAV_5811 hypothetical protein; SMART: Regulatory protein, FmdB
YP_004331821.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: ami:Amir_6067 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain
YP_004331822.1	KEGG: svi:Svir_28470 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004331823.1	PFAM: Crotonase, core; KEGG: sen:SACE_6207 enoyl-CoA hydratase-isomerase
YP_004331824.1	PFAM: Methyltransferase type 11; KEGG: rop:ROP_65070  methyltransferase
YP_004331825.1	PFAM: ATPase-like, ATP-binding domain; KEGG: amd:AMED_9311 two-component system histidine kinase
YP_004331826.1	KEGG: svi:Svir_39510 response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004331827.1	KEGG: kfl:Kfla_4709 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004331829.1	KEGG: ami:Amir_6061 acetyltransferase (isoleucine patch superfamily)-like protein
YP_004331830.1	PFAM: Glycosyl transferase, group 1; Starch synthase, catalytic domain; KEGG: ami:Amir_6058 glycosyl transferase group 1
YP_004331831.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fre:Franean1_4105 LysR family transcriptional regulator
YP_004331832.1	TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: fal:FRAAL4799 NtaA/SnaA/SoxA family monooxygenase
YP_004331833.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: rop:ROP_14350  ABC transporter substrate-binding protein
YP_004331834.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro01762 ABC peptide transporter, permease component
YP_004331835.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro01761 ABC peptide transporter, permease component
YP_004331836.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: rop:ROP_14320  ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004331837.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: fal:FRAAL4794 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004331838.1	KEGG: fal:FRAAL3869 hypothetical protein
YP_004331839.1	PFAM: Cupin 2, conserved barrel; KEGG: tcu:Tcur_1382 cupin 2 conserved barrel domain-containing protein
YP_004331840.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sco:SCO5904 hypothetical protein
YP_004331841.1	KEGG: amd:AMED_1351 hypothetical protein
YP_004331842.1	PFAM: Domain of unknown function DUF1957; Glycoside hydrolase, family 57, N-terminal; KEGG: ami:Amir_6057 glycoside hydrolase 57
YP_004331843.1	PFAM: Methyltransferase type 11; KEGG: ami:Amir_6056 methyltransferase type 11
YP_004331844.1	KEGG: sus:Acid_4192 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004331845.1	PFAM: Allantoicase domain; TIGRFAM: Allantoicase; HAMAP: Allantoicase; KEGG: rop:ROP_44360 allantoicase
YP_004331846.1	TIGRFAM: Allantoinase; KEGG: cai:Caci_4726 allantoinase; PFAM: Amidohydrolase 1
YP_004331847.1	PFAM: AIG2-like; KEGG: sna:Snas_2545 hypothetical protein
YP_004331848.1	KEGG: gob:Gobs_3387 xanthine dehydrogenase subunit D; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004331849.1	KEGG: nml:Namu_0260 hydroxydechloroatrazine ethylaminohydrolase; PFAM: Amidohydrolase 1
YP_004331850.1	KEGG: amd:AMED_1920 carbon-monoxide dehydrogenase small subunit; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004331851.1	PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: gob:Gobs_3389 molybdopterin dehydrogenase FAD-binding protein
YP_004331852.1	PFAM: Purine catabolism PurC-like; KEGG: nml:Namu_1388 PucR family transcriptional regulator
YP_004331854.1	TIGRFAM: Uricase; KEGG: msm:MSMEG_1296 uricase; PFAM: Uricase
YP_004331855.1	KEGG: fra:Francci3_0842 transthyretin; TIGRFAM: Hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase
YP_004331856.1	KEGG: kra:Krad_2069 hypothetical protein; TIGRFAM: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
YP_004331857.1	KEGG: nml:Namu_0261 xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; PFAM: Xanthine/uracil/vitamin C permease; Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
YP_004331859.1	KEGG: amd:AMED_1653 electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_004331860.1	KEGG: sen:SACE_6196 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
YP_004331861.1	KEGG: ami:Amir_6049 ornithine-acyl(acyl carrier protein) N-acyltransferase
YP_004331862.1	KEGG: sma:SAV_7311 1-acylglycerol-3-phosphate O-acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004331863.1	KEGG: amd:AMED_1660 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004331864.1	TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: nfa:nfa42670 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase
YP_004331865.1	PFAM: Domain of unknown function DUF1206; KEGG: scb:SCAB_8071 integral membrane protein
YP_004331866.1	PFAM: Protein of unknown function DUF1330; KEGG: bgf:BC1003_4875 hypothetical protein
YP_004331867.1	KEGG: eli:ELI_00975 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004331868.1	KEGG: bts:Btus_1990 beta-ketoacyl synthase; PFAM: Thiolase, C-terminal
YP_004331869.1	KEGG: fra:Francci3_2247 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004331870.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: swi:Swit_0760 TetR family transcriptional regulator
YP_004331871.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: svi:Svir_08670 cobalamin-independent methionine synthase
YP_004331873.1	KEGG: hoh:Hoch_1789 serine--pyruvate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004331874.1	PFAM: Clp, N-terminal; KEGG: rop:ROP_03750 hypothetical protein
YP_004331875.1	PFAM: Luciferase-like, subgroup; KEGG: cai:Caci_7375 luciferase-like monooxygenase
YP_004331876.1	SMART: NAD-dependent DNA ligase, N-terminal; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: amd:AMED_1669 DNA ligase (NAD+); HAMAP: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT
YP_004331877.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: mau:Micau_1535 hypothetical protein
YP_004331878.1	PFAM: Ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; KEGG: stp:Strop_2076 oxidoreductase FAD-binding subunit
YP_004331879.1	PFAM: Fatty acid desaturase, type 1; KEGG: fal:FRAAL6454 linoleoyl-CoA desaturase (delta(6)-desaturase)
YP_004331880.1	PFAM: HTH transcriptional regulator, LysR; KEGG: cwo:Cwoe_4185 transcriptional regulator, CdaR
YP_004331881.1	PFAM: Amino acid-binding ACT; KEGG: amd:AMED_1671 ACT domain-containing protein
YP_004331882.1	TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Glu-tRNAGln amidotransferase, C subunit; KEGG: sro:Sros_8075 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit
YP_004331883.1	TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: sen:SACE_6173 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase
YP_004331884.1	SMART: Asn/Gln amidotransferase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: svi:Svir_08750 aspartyl/glutamyl-tRNA amidotransferase subunit B; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase
YP_004331885.1	KEGG: ami:Amir_2715 luciferase-like monooxygenase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted; PFAM: Luciferase-like, subgroup
YP_004331886.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: rha:RHA1_ro06693 5-valerolactone hydrolase
YP_004331887.1	KEGG: sen:SACE_2895 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004331888.1	PFAM: Luciferase-like, subgroup; KEGG: msm:MSMEG_5626 luciferase
YP_004331889.1	manually curated; PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: nda:Ndas_3659 transcriptional regulator, LacI family; SMART: HTH transcriptional regulator, LacI
YP_004331890.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sro:Sros_5274 hypothetical protein
YP_004331891.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: amd:AMED_1482  transposase
YP_004331892.1	KEGG: pla:Plav_1165 cyclohexanone monooxygenase
YP_004331893.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: axy:AXYL_01704 hypothetical protein
YP_004331894.1	KEGG: fri:FraEuI1c_2474 hypothetical protein
YP_004331895.1	KEGG: fre:Franean1_1584 alpha/beta hydrolase domain-containing protein
YP_004331896.1	KEGG: rha:RHA1_ro02283 formyl-CoA transferase; PFAM: CoA-transferase III
YP_004331897.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_4114 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004331898.1	KEGG: req:REQ_15570 hypothetical protein
YP_004331900.1	KEGG: sen:SACE_6165 glucose dehydrogenase
YP_004331901.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ami:Amir_6027 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
YP_004331902.1	PFAM: Uncharacterised protein family YphA; KEGG: sen:SACE_6162 hypothetical protein
YP_004331903.1	PFAM: Aminoglycoside phosphotransferase; KEGG: cwo:Cwoe_5845 aminoglycoside phosphotransferase
YP_004331904.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: rop:ROP_36610 hypothetical protein
YP_004331905.1	PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: amd:AMED_1683 dihydroxy-acid dehydratase
YP_004331906.1	KEGG: sen:SACE_6160 hypothetical protein
YP_004331907.1	TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: ami:Amir_6021 acetolactate synthase 1 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004331908.1	KEGG: svi:Svir_08880 acetolactate synthase 3 regulatory subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT
YP_004331909.1	PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Acetohydroxy acid isomeroreductase; KEGG: amd:AMED_1687 ketol-acid reductoisomerase
YP_004331910.1	KEGG: req:REQ_33170 fmn-dependent monooxygenase; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like, subgroup
YP_004331911.1	PFAM: Methyltransferase type 11; KEGG: ava:Ava_C0006 hypothetical protein
YP_004331912.1	TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: sen:SACE_6155 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT
YP_004331913.1	HAMAP: 3-isopropylmalate dehydrogenase; KEGG: amd:AMED_1696 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004331914.1	KEGG: bbt:BBta_5960 hypothetical protein; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD
YP_004331915.1	PFAM: Monooxygenase, FAD-binding; KEGG: tpr:Tpau_1606 monooxygenase FAD-binding protein
YP_004331916.1	PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; manually curated; KEGG: ami:Amir_6009 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial
YP_004331917.1	PFAM: Heat shock protein 70; KEGG: amd:AMED_5168 chaperone protein DnaK-like protein
YP_004331918.1	KEGG: ami:Amir_6007 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004331919.1	TIGRFAM: 3-isopropylmalate dehydratase, large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit; KEGG: ami:Amir_6006 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
YP_004331920.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; HAMAP: 3-isopropylmalate dehydratase, small subunit; KEGG: amd:AMED_1724 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_004331921.1	KEGG: mul:MUL_1970 DNA-binding protein HU HupB-like protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004331922.1	KEGG: amd:AMED_1727 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004331923.1	PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: amd:AMED_1728 polyphosphate kinase
YP_004331924.1	TIGRFAM: 2-phospho-L-lactate guanylyltransferase, CofC; KEGG: amd:AMED_1729 hypothetical protein
YP_004331925.1	KEGG: ami:Amir_5999 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004331926.1	KEGG: ami:Amir_5998 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal
YP_004331927.1	KEGG: ami:Amir_5997 cystathionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004331929.1	KEGG: nml:Namu_1825 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_004331930.1	PFAM: Protein of unknown function DUF2252; KEGG: rop:ROP_05540 hypothetical protein
YP_004331931.1	TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sen:SACE_3176 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase
YP_004331932.1	KEGG: rop:ROP_57920 glutamate-1-semialdehyde 2,1-aminomutase; PFAM: Aminotransferase class-III
YP_004331933.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: amd:AMED_0549 exopolysaccharide biosynthesis protein
YP_004331934.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: amd:AMED_0550 exopolysaccharide biosynthesis protein
YP_004331935.1	TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sro:Sros_0655 GDP-mannose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_004331936.1	TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: sco:SCO0386 asparagine synthetase; PFAM: Asparagine synthase; Glycosyl transferase, group 1; Glutamine amidotransferase, class-II
YP_004331937.1	PFAM: Oxidoreductase, N-terminal; Alcohol dehydrogenase, C-terminal; Oxidoreductase, C-terminal; KEGG: amd:AMED_0552 oxidoreductase
YP_004331938.1	PFAM: Heparinase II/III-like; KEGG: sco:SCO0388 hypothetical protein
YP_004331939.1	KEGG: amd:AMED_0554 lipoprotein
YP_004331940.1	KEGG: amd:AMED_0555 hypothetical protein
YP_004331941.1	PFAM: Glycosyl transferase, group 1; KEGG: sco:SCO0391 transferase
YP_004331942.1	KEGG: chl:Chy400_1601 transferase hexapeptide repeat containing protein
YP_004331943.1	PFAM: Polysaccharide pyruvyl transferase; KEGG: amd:AMED_0562 hypothetical protein
YP_004331944.1	PFAM: Glycosyl transferase, family 2; KEGG: amd:AMED_0563 glycosyltransferase
YP_004331945.1	PFAM: Polysaccharide biosynthesis protein; KEGG: sco:SCO0397 integral membrane protein
YP_004331946.1	PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: amd:AMED_0557 integral membrane protein
YP_004331947.1	KEGG: sco:SCO0393 transferase
YP_004331948.1	KEGG: svi:Svir_11850 hypothetical protein
YP_004331949.1	PFAM: Protein of unknown function DUF477; KEGG: svi:Svir_11860 protein of unknown function (DUF477)
YP_004331950.1	KEGG: tfu:Tfu_2960 ATP-binding region, ATPase-like; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004331951.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004331952.1	TIGRFAM: Parallel beta-helix repeat-2; KEGG: dre:100006405 hypothetical LOC100006405
YP_004331953.1	PFAM: ATP-grasp fold, DUF201-type; KEGG: hje:HacjB3_10435 ATP-grasp protein-like protein
YP_004331954.1	KEGG: amd:AMED_6941 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004331955.1	KEGG: amd:AMED_6942 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004331956.1	KEGG: tbi:Tbis_1928 polysaccharide biosynthesis protein CelD
YP_004331957.1	PFAM: Polysaccharide deacetylase; KEGG: plm:Plim_0677 polysaccharide deacetylase
YP_004331958.1	PFAM: Polysaccharide deacetylase; KEGG: sen:SACE_3921  polysaccharide deacetylase
YP_004331959.1	PFAM: Glycosyl transferase, group 1; KEGG: msp:Mspyr1_46690 glycosyltransferase
YP_004331960.1	KEGG: ppd:Ppro_2168 ATP-grasp enzyme-like protein
YP_004331961.1	KEGG: ote:Oter_0060 hypothetical protein
YP_004331962.1	KEGG: chl:Chy400_1771 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004331963.1	PFAM: O-antigen ligase-related; KEGG: msp:Mspyr1_46700 lipid A core-O-antigen ligase-like enyme
YP_004331964.1	PFAM: Lipopolysaccharide biosynthesis; KEGG: msp:Mspyr1_46710 hypothetical protein
YP_004331965.1	PFAM: Glycosyl transferase, group 1; KEGG: nml:Namu_3529 group 1 glycosyl transferase
YP_004331966.1	TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gob:Gobs_0418 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase
YP_004331967.1	PFAM: Glycosyl transferase, family 2; KEGG: nml:Namu_3183 family 2 glycosyl transferase
YP_004331968.1	PFAM: Glycosyl transferase, group 1; KEGG: nml:Namu_3530 group 1 glycosyl transferase
YP_004331969.1	PFAM: Polysaccharide biosynthesis protein; KEGG: rop:ROP_57940  polysaccharide biosynthesis protein
YP_004331970.1	PFAM: Polysaccharide deacetylase; KEGG: mrd:Mrad2831_4617 polysaccharide deacetylase
YP_004331971.1	PFAM: Glycosyl transferase, family 2; KEGG: cai:Caci_8495 glycosyl transferase 2
YP_004331972.1	KEGG: ami:Amir_1738 N-acetylglucosamine-1-phosphateuridyltransferase-like protein
YP_004331973.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ami:Amir_1737 DegT/DnrJ/EryC1/StrS aminotransferase
YP_004331974.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cai:Caci_8499 glutamine--scyllo-inositol transaminase
YP_004331975.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: ami:Amir_1731 oxidoreductase domain protein
YP_004331976.1	KEGG: cwo:Cwoe_5315 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004331977.1	PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: scb:SCAB_23551 integral membrane protein
YP_004331978.1	TIGRFAM: Peptidase M1, aminopeptidase N actinomycete-type; KEGG: ami:Amir_1142 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal
YP_004331979.1	PFAM: C-methyltransferase; Methyltransferase hyptothetical; KEGG: gob:Gobs_0365 C-methyltransferase
YP_004331980.1	KEGG: sro:Sros_0651 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related
YP_004331981.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: sro:Sros_0638 nucleoside-diphosphate-sugar epimerase
YP_004331982.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: amd:AMED_0567 LmbE family protein
YP_004331983.1	PFAM: C-methyltransferase; Methyltransferase hyptothetical; Methyltransferase type 12; KEGG: sro:Sros_0635 methyltransferase
YP_004331984.1	KEGG: sen:SACE_1340 DsbA oxidoreductase
YP_004331985.1	KEGG: sno:Snov_2020  signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004331986.1	PFAM: Aldehyde dehydrogenase domain; KEGG: sen:SACE_1341 aldehyde dehydrogenase
YP_004331987.1	PFAM: Serine/threonine-protein kinase-like domain; KEGG: nfa:nfa31920  serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004331988.1	KEGG: fal:FRAAL4487  acylaminoacyl-peptidase
YP_004331989.1	KEGG: sro:Sros_3531 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: Asparagine synthase amidotransferase; Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II
YP_004331990.1	TIGRFAM: Carboxylate-amine ligase, predicted; HAMAP: Carboxylate-amine ligase, predicted; KEGG: fre:Franean1_2292 hypothetical protein; PFAM: Domain of unknown function DUF404; Glutamate--cysteine ligase, GCS2; Domain of unknown function DUF407
YP_004331991.1	TIGRFAM: Haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2; KEGG: sti:Sthe_3243 haloacid dehalogenase, type II; PFAM: Haloacid dehalogenase-like hydrolase
YP_004331992.1	KEGG: sen:SACE_1347 metallo-beta-lactamase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004331993.1	KEGG: mgi:Mflv_1504 hypothetical protein
YP_004331994.1	KEGG: rer:RER_47870 hypothetical protein
YP_004331995.1	KEGG: gob:Gobs_1550 hypothetical protein
YP_004331996.1	TIGRFAM: Ribose 5-phosphate isomerase, actinobacteria; Ribose/galactose isomerase; KEGG: gbr:Gbro_2041 ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase
YP_004331997.1	PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; DNA glycosylase/AP lyase, catalytic domain; KEGG: sen:SACE_1351 formamidopyrimidine-DNA glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain
YP_004331998.1	KEGG: ami:Amir_1148 hypothetical protein
YP_004331999.1	KEGG: mrd:Mrad2831_6081 hypothetical protein
YP_004332001.1	KEGG: svi:Svir_26660 hypothetical protein
YP_004332002.1	KEGG: tcu:Tcur_1929 carnitine O-acetyltransferase; PFAM: Acyltransferase ChoActase/COT/CPT
YP_004332003.1	KEGG: sma:SAV_542 hypothetical protein
YP_004332004.1	KEGG: kfl:Kfla_1162 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-G type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004332005.1	PFAM: Protein of unknown function DUF899, thioredoxin-like; KEGG: cwo:Cwoe_4051 protein of unknown function DUF899 thioredoxin family protein
YP_004332006.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: sus:Acid_5617 hypothetical protein
YP_004332007.1	KEGG: sen:SACE_3972 AraC family transcription regulator; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004332008.1	PFAM: Major facilitator superfamily MFS-1; KEGG: mab:MAB_1338  membrane efflux protein
YP_004332009.1	TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: apv:Apar_0653 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib
YP_004332010.1	PFAM: HTH transcriptional regulator, LysR; KEGG: fri:FraEuI1c_3185 transcriptional regulator, LysR family
YP_004332011.1	KEGG: nda:Ndas_2113 hypothetical protein
YP_004332013.1	KEGG: afo:Afer_1999 hypothetical protein
YP_004332014.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: mau:Micau_1997 bifunctional deaminase-reductase domain-containing protein
YP_004332015.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: sna:Snas_2706 transcriptional regulator, AraC family
YP_004332016.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: req:REQ_47330 TetR family transcriptional regulator
YP_004332017.1	PFAM: ABC transporter-like; KEGG: rer:RER_51400 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004332018.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: mau:Micau_3733 hypothetical protein
YP_004332019.1	KEGG: kfl:Kfla_1240 hypothetical protein
YP_004332020.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sco:SCO7666 zinc-binding oxidoreductase (fragment); SMART: Polyketide synthase, enoylreductase
YP_004332021.1	TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: rha:RHA1_ro07109 cyanamide hydratase; SMART: Metal-dependent phosphohydrolase, HD domain
YP_004332022.1	KEGG: rha:RHA1_ro07108 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004332023.1	KEGG: axy:AXYL_00827 hypothetical protein
YP_004332024.1	PFAM: Protein of unknown function DUF2183; KEGG: tra:Trad_1218 hypothetical protein
YP_004332025.1	KEGG: azc:AZC_0152 hypothetical protein
YP_004332026.1	HAMAP: Peptidase A8, signal peptidase II; KEGG: rer:pREL1_0145  signal peptidase II
YP_004332027.1	KEGG: cyn:Cyan7425_0057 glycosyl transferase 28; PFAM: Glycosyl transferase, family 28
YP_004332029.1	PFAM: Uncharacterised protein family YphA; KEGG: mau:Micau_1938 DoxX family protein
YP_004332030.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mil:ML5_5247 lysine exporter protein (LysE/YggA)
YP_004332031.1	PFAM: Protein of unknown function DUF1697; KEGG: cwo:Cwoe_4791 protein of unknown function DUF1697
YP_004332032.1	PFAM: CoA-transferase III; KEGG: fri:FraEuI1c_2687 L-carnitine dehydratase/bile acid-inducible protein F
YP_004332033.1	KEGG: ami:Amir_4801 SNARE associated Golgi protein
YP_004332035.1	KEGG: amd:AMED_8935 hypothetical protein
YP_004332036.1	KEGG: amd:AMED_9175 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004332037.1	TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: sen:SACE_3997 glutamate synthase, NADH/NADPH, small subunit 1; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004332038.1	KEGG: sen:SACE_3998  glutamate synthase(NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal
YP_004332039.1	PFAM: FhuF/siderophore biosynthesis protein; KEGG: sro:Sros_5551 hypothetical protein
YP_004332040.1	KEGG: sro:Sros_8027 hypothetical protein
YP_004332041.1	KEGG: scb:SCAB_4341 hypothetical protein
YP_004332042.1	KEGG: sgr:SGR_320 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004332043.1	PFAM: CsbD-like; KEGG: nml:Namu_0307 CsbD family protein
YP_004332044.1	KEGG: sen:SACE_1867 hypothetical protein
YP_004332045.1	TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: sen:SACE_1359  cell division trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial
YP_004332046.1	HAMAP: Peptidase S14, ClpP; KEGG: rer:RER_38150 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP
YP_004332047.1	HAMAP: Peptidase S14, ClpP; KEGG: ami:Amir_1153 endopeptidase Clp; PFAM: Peptidase S14, ClpP
YP_004332048.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: ami:Amir_1154 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal
YP_004332049.1	KEGG: fal:FRAAL3412  alpha-methylacyl-CoA racemase; PFAM: CoA-transferase III
YP_004332050.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_6732 integral membrane transporter
YP_004332051.1	KEGG: msm:MSMEG_2304 hypothetical protein
YP_004332052.1	KEGG: nda:Ndas_0831  F420-dependent enzyme; TIGRFAM: F420-binding domain, PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004332053.1	KEGG: mva:Mvan_5721 hypothetical protein
YP_004332054.1	KEGG: sen:SACE_1384 valyl-tRNA synthetase; manually curated; TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase
YP_004332055.1	TIGRFAM: Folylpolyglutamate synthetase; KEGG: rha:RHA1_ro01317 tetrahydrofolylpolyglutamate synthase; PFAM: Mur ligase, C-terminal; Mur ligase, central
YP_004332056.1	KEGG: svi:Svir_12380 hypothetical protein
YP_004332057.1	KEGG: amd:AMED_7406 lysyl oxidase-like protein
YP_004332058.1	SMART: Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase; KEGG: sen:SACE_1401 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_004332059.1	PFAM: ABC transporter-like; KEGG: ami:Amir_1173 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004332060.1	PFAM: ABC-2 type transporter; KEGG: amd:AMED_6710 ABC transport system permease
YP_004332061.1	PFAM: ABC-2 type transporter; KEGG: amd:AMED_6709 ABC-2 type transporter
YP_004332062.1	PFAM: Cupin 2, conserved barrel; KEGG: mil:ML5_2039 cupin 2 conserved barrel domain protein
YP_004332063.1	KEGG: svi:Svir_26400 hypothetical protein
YP_004332064.1	TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: abo:ABO_0776 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase
YP_004332065.1	KEGG: sen:SACE_1403  Fe-S oxidoreductase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB
YP_004332066.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: srt:Srot_2543 GCN5-related N-acetyltransferase
YP_004332067.1	PFAM: Protein of unknown function DUF2344; KEGG: sen:SACE_1405 hypothetical protein
YP_004332068.1	TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Translation initiation factor IF-2, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: sen:SACE_1406 ribonuclease; SMART: RNA-binding domain, S1
YP_004332069.1	TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: sen:SACE_1414 50S ribosomal protein L21; PFAM: Ribosomal protein L21
YP_004332070.1	TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: tpr:Tpau_1474 ribosomal protein L27; PFAM: Ribosomal protein L27
YP_004332071.1	TIGRFAM: GTP-binding protein Obg/CgtA; GTP-binding protein GTP1/OBG, C-terminal; HAMAP: GTP-binding protein Obg/CgtA; KEGG: svi:Svir_12520 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTP-binding protein GTP1/OBG, C-terminal
YP_004332072.1	KEGG: ami:Amir_1190 glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; HAMAP: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; SMART: Pseudouridine synthase/archaeosine transglycosylase
YP_004332073.1	manually curated; KEGG: sro:Sros_6795 protein-L-isoaspartate(D-aspartate)O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004332074.1	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: ami:Amir_1193 ATP-dependent DNA helicase, RecQ family; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal
YP_004332075.1	KEGG: rha:RHA1_ro01299 hypothetical protein; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core
YP_004332076.1	PFAM: vWA containing CoxE-like; KEGG: rop:ROP_10200 hypothetical protein
YP_004332077.1	KEGG: cwo:Cwoe_3384 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004332078.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: amd:AMED_0950 hypothetical protein
YP_004332079.1	KEGG: sgr:SGR_1198 hypothetical protein
YP_004332080.1	KEGG: sro:Sros_0735 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal
YP_004332081.1	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: sro:Sros_0736 hypothetical protein
YP_004332082.1	KEGG: sen:SACE_6240 hypothetical protein
YP_004332083.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_1576 TetR family transcriptional regulator
YP_004332084.1	KEGG: afw:Anae109_1653  alkylated DNA repair protein
YP_004332085.1	PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: sen:SACE_1428  nicotinate-nucleotide adenylyltransferase
YP_004332086.1	KEGG: ami:Amir_1198 iojap-like protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like
YP_004332087.1	KEGG: amd:AMED_6693 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004332088.1	KEGG: ami:Amir_1200 hypothetical protein
YP_004332089.1	KEGG: ami:Amir_1201 DegV family protein; TIGRFAM: DegV; PFAM: DegV
YP_004332090.1	TIGRFAM: Competence protein ComEA, helix-hairpin-helix domain; PFAM: Soluble ligand binding domain; Helix-hairpin-helix motif; KEGG: nml:Namu_1518 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding motif, class 1
YP_004332091.1	TIGRFAM: Threonine synthase; KEGG: ami:Amir_1205 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004332092.1	KEGG: svi:Svir_12630 hypothetical protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta
YP_004332093.1	TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: svi:Svir_12640 SSU ribosomal protein S20P; PFAM: Ribosomal protein S20
YP_004332094.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: gob:Gobs_3876 alpha/beta hydrolase fold protein
YP_004332095.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; NHL repeat; KEGG: krh:KRH_03700 hypothetical protein
YP_004332096.1	KEGG: rha:RHA1_ro05056 ABC transporter, ATP-binding component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004332097.1	PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: kra:Krad_0151 DNA-(apurinic or apyrimidinic site) lyase; SMART: DNA glycosylase/AP lyase, catalytic domain
YP_004332098.1	KEGG: nml:Namu_1164 PA-phosphatase-like phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004332099.1	HAMAP: Phosphoglucose isomerase (PGI); KEGG: jde:Jden_0370 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI)
YP_004332101.1	PFAM: Uncharacterised protein family YphA; KEGG: sro:Sros_7264 membrane protein-like protein
YP_004332102.1	KEGG: nda:Ndas_1956 hypothetical protein
YP_004332103.1	KEGG: gob:Gobs_1065 hypothetical protein
YP_004332104.1	PFAM: Aminoglycoside phosphotransferase; KEGG: fre:Franean1_6920 aminoglycoside phosphotransferase
YP_004332105.1	KEGG: amd:AMED_5932 hypothetical protein
YP_004332106.1	TIGRFAM: Glutamate decarboxylase; KEGG: nfa:nfa35400  glutamate decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase
YP_004332107.1	PFAM: Uncharacterised conserved protein UCP012608; KEGG: svi:Svir_06550 hypothetical protein
YP_004332108.1	PFAM: Polysaccharide deacetylase; KEGG: sma:SAV_81 oligosaccharide deacetylase
YP_004332109.1	KEGG: gob:Gobs_2301 hypothetical protein
YP_004332110.1	KEGG: gob:Gobs_2495 cytochrome P450; PFAM: Cytochrome P450
YP_004332111.1	PFAM: Metallo-dependent phosphatase; KEGG: fra:Francci3_1505 metallophosphoesterase
YP_004332112.1	TIGRFAM: Ribosomal protein L31; HAMAP: Ribosomal protein L31; KEGG: amd:AMED_5005 large subunit ribosomal protein L31; PFAM: Ribosomal protein L31
YP_004332113.1	PFAM: Periplasmic binding protein; KEGG: rer:RER_04570 iron-siderophore binding protein
YP_004332114.1	PFAM: Chloride channel, voltage gated; KEGG: afo:Afer_0254 chloride channel core
YP_004332115.1	PFAM: Beta-lactamase-related; KEGG: mab:MAB_0330 beta-lactamase
YP_004332116.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: sna:Snas_3554 bifunctional deaminase-reductase domain-containing protein
YP_004332117.1	PFAM: Streptomyces sporulation/cell division protein SsgA; KEGG: ami:Amir_2015 sporulation and cell division protein SsgA
YP_004332118.1	KEGG: ami:Amir_2016 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004332119.1	KEGG: gob:Gobs_3193  transmembrane anti-sigma factor
YP_004332120.1	KEGG: rbi:RB2501_04000 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004332121.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: gob:Gobs_4877 activator of HSP90 ATPase 1 family protein
YP_004332122.1	KEGG: gob:Gobs_4878 transcriptional regulator TrmB; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004332123.1	PFAM: Major intrinsic protein; KEGG: nml:Namu_0790 major intrinsic protein
YP_004332124.1	TIGRFAM: Glutamate decarboxylase; KEGG: bav:BAV2797 glutamate decarboxylase alpha/beta; PFAM: Pyridoxal phosphate-dependent decarboxylase
YP_004332125.1	KEGG: nml:Namu_1376 hypothetical protein
YP_004332126.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: art:Arth_3112 TetR family transcriptional regulator
YP_004332127.1	KEGG: art:Arth_3235 hypothetical protein
YP_004332128.1	PFAM: Protein of unknown function DUF1707; KEGG: nfa:nfa55550 hypothetical protein
YP_004332129.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_4982 integral membrane transport protein
YP_004332130.1	KEGG: fri:FraEuI1c_4109 hydrolase CocE/NonD family protein; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal
YP_004332131.1	KEGG: msm:MSMEG_5829 Dyp-type peroxidase; TIGRFAM: Dyp-type peroxidase; PFAM: Dyp-type peroxidase
YP_004332132.1	SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: sco:SCO0601 secreted protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type
YP_004332133.1	KEGG: tpr:Tpau_2157 hypothetical protein
YP_004332134.1	KEGG: fri:FraEuI1c_4558 nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; PFAM: Luciferase-like, subgroup
YP_004332135.1	KEGG: fre:Franean1_6909 citrate (pro-3S)-lyase; PFAM: Aldehyde-lyase domain
YP_004332136.1	KEGG: amd:AMED_7135 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase III
YP_004332137.1	KEGG: bbr:BB2819 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004332138.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0832 transcriptional regulator, TetR family
YP_004332139.1	KEGG: cwo:Cwoe_3882 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332140.1	PFAM: Crotonase, core; KEGG: ade:Adeh_1645 short chain enoyl-CoA hydratase
YP_004332141.1	PFAM: Crotonase, core; KEGG: ace:Acel_0400 short chain enoyl-CoA hydratase
YP_004332142.1	PFAM: Extracellular ligand-binding receptor; KEGG: bpt:Bpet2312 Leu/Ile/Val-binding protein precursor
YP_004332143.1	PFAM: ABC transporter permease; KEGG: slp:Slip_2360 inner-membrane translocator
YP_004332144.1	PFAM: ABC transporter-like; KEGG: mno:Mnod_0334 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004332145.1	KEGG: msl:Msil_0063 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004332146.1	PFAM: ABC transporter permease; KEGG: sgo:SGO_1629 branched-chain amino acid permease
YP_004332147.1	KEGG: sai:Saci_1633 3-hydroxybutyryl-CoA dehydratase; PFAM: Crotonase, core
YP_004332148.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: acp:A2cp1_3027 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase
YP_004332149.1	PFAM: MmgE/PrpD; KEGG: bbr:BB4700 hypothetical protein
YP_004332150.1	KEGG: rha:RHA1_ro00762 hypothetical protein
YP_004332151.1	PFAM: MaoC-like dehydratase; KEGG: mav:MAV_3005 MaoC like domain-containing protein
YP_004332152.1	KEGG: tro:trd_1493 TPP-dependent acetoin dehydrogenase alpha-subunit; PFAM: Dehydrogenase, E1 component
YP_004332153.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: bpe:BP0628  pyruvate dehydrogenase E1 beta subunit; SMART: Transketolase-like, pyrimidine-binding domain
YP_004332154.1	PFAM: Biotin/lipoyl attachment; KEGG: mmr:Mmar10_2816 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
YP_004332155.1	KEGG: drm:Dred_0576  crotonobetaine/carnitine-CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332156.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0832 transcriptional regulator, TetR family
YP_004332157.1	KEGG: rop:ROP_25260 flavin-containing monooxygenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_004332158.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ami:Amir_2775 GCN5-related N-acetyltransferase
YP_004332159.1	PFAM: Helix-turn-helix, Fis-type; KEGG: rha:RHA1_ro10163 transcriptional regulator
YP_004332160.1	KEGG: nml:Namu_2338 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria
YP_004332161.1	KEGG: nml:Namu_2339  PucR family transcriptional regulator; PFAM: GAF; SMART: GAF
YP_004332162.1	KEGG: nml:Namu_2340 alcohol dehydrogenase GroES domain-containing protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_004332163.1	HAMAP: Malate dehydrogenase, NAD-dependent; KEGG: nml:Namu_2341 lactate/malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal
YP_004332164.1	KEGG: nml:Namu_2342 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria
YP_004332165.1	TIGRFAM: Ethanolamine utilisation EutJ; KEGG: nml:Namu_2343 ethanolamine utilization protein EutJ family protein
YP_004332166.1	KEGG: nml:Namu_2344 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004332167.1	KEGG: nml:Namu_2345 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria
YP_004332168.1	PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: nml:Namu_2346 ethanolamine utilization protein EutN/carboxysome structural protein CcmL
YP_004332169.1	KEGG: nml:Namu_2347 hypothetical protein
YP_004332170.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nml:Namu_2348 haloacid dehalogenase domain-containing protein hydrolase
YP_004332171.1	KEGG: nml:Namu_2349 protein tyrosine/serine phosphatase
YP_004332172.1	KEGG: nml:Namu_2357 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme
YP_004332173.1	KEGG: nml:Namu_2358 hypothetical protein
YP_004332174.1	KEGG: nml:Namu_2359 hypothetical protein
YP_004332175.1	KEGG: nml:Namu_2360 hypothetical protein
YP_004332176.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: fal:FRAAL4216 bifunctional: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004332177.1	KEGG: amd:AMED_2190 adenosine kinase; PFAM: Carbohydrate/purine kinase
YP_004332178.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: svi:Svir_11670 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_004332179.1	PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; KEGG: cwo:Cwoe_3729 S-adenosylmethionine synthetase
YP_004332180.1	KEGG: iag:Igag_0649 methionine synthase (B12-independent); PFAM: Methionine synthase, vitamin-B12 independent
YP_004332181.1	KEGG: cwo:Cwoe_4355 hypothetical protein
YP_004332182.1	PFAM: Methylenetetrahydrofolate reductase; KEGG: dbr:Deba_2153 methylenetetrahydrofolate reductase
YP_004332183.1	KEGG: ara:Arad_2827 hypothetical protein
YP_004332184.1	PFAM: HTH transcriptional regulator, LysR; KEGG: rrs:RoseRS_0141 transcriptional regulator, CdaR
YP_004332185.1	KEGG: tro:trd_1049 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; PFAM: Homocysteine S-methyltransferase; Methylenetetrahydrofolate reductase
YP_004332186.1	PFAM: Acyltransferase 3; KEGG: rxy:Rxyl_2066 acyltransferase 3
YP_004332187.1	KEGG: sti:Sthe_1149 protein of unknown function DUF201
YP_004332188.1	KEGG: req:REQ_42420 metallopeptidase; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal
YP_004332189.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nml:Namu_2999 major facilitator superfamily protein
YP_004332190.1	PFAM: Cupin 2, conserved barrel; KEGG: ami:Amir_3902 cupin 2 conserved barrel domain protein
YP_004332191.1	KEGG: fri:FraEuI1c_0640 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004332193.1	PFAM: Protein of unknown function DUF349; KEGG: ami:Amir_1442 protein of unknown function DUF349
YP_004332194.1	KEGG: ami:Amir_1441 hypothetical protein
YP_004332195.1	PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: ami:Amir_1440 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase
YP_004332196.1	TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: ami:Amir_1439 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase
YP_004332197.1	KEGG: amd:AMED_2389 GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related
YP_004332198.1	KEGG: lma:LmjF35.0540 proteophosphoglycan 5
YP_004332199.1	KEGG: acp:A2cp1_0929 hypothetical protein
YP_004332200.1	TIGRFAM: Peptidase S24, LexA repressor; HAMAP: Peptidase S24, LexA repressor; KEGG: gob:Gobs_3902 LexA family transcriptional regulator; PFAM: LexA, DNA-binding domain; Peptidase S24/S26A/S26B, conserved region
YP_004332201.1	KEGG: amd:AMED_2392 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_004332202.1	PFAM: ATP-cone; manually curated; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; KEGG: amd:AMED_2393 transcriptional regulator NrdR; HAMAP: Ribonucleotide reductase regulator NrdR-like
YP_004332203.1	TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: ami:Amir_1431 vitamin B12-dependent ribonucleotide reductase; PFAM: Ribonucleotide reductase class II vitamin B12-dependent; Ribonucleotide reductase large subunit, C-terminal
YP_004332204.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: sma:SAV_1746 hydrolase
YP_004332205.1	PFAM: NUDIX hydrolase domain; KEGG: bcv:Bcav_2398 NUDIX hydrolase
YP_004332206.1	TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: mpa:MAP3992 hypothetical protein
YP_004332207.1	PFAM: Transglutaminase-like; KEGG: mgi:Mflv_4586 hypothetical protein
YP_004332208.1	KEGG: svi:Svir_08650 Zn-dependent hydrolase, glyoxylase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004332209.1	KEGG: svi:Svir_10250 hypothetical protein
YP_004332210.1	KEGG: sen:SACE_1522 hypothetical protein
YP_004332211.1	PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: ami:Amir_1324 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain
YP_004332212.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: amd:AMED_2100 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_004332213.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: svi:Svir_10280 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004332214.1	PFAM: Acyl transferase; KEGG: rha:RHA1_ro01199 [acyl-carrier protein] S-malonyltransferase; SMART: Polyketide synthase, acyl transferase domain
YP_004332215.1	KEGG: ami:Amir_1328  transcriptional regulator, PucR family
YP_004332216.1	PFAM: Pirin, N-terminal; KEGG: req:REQ_42380 pirin-like protein
YP_004332217.1	KEGG: gob:Gobs_1896 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004332218.1	KEGG: sen:SACE_1532 pyruvate dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type
YP_004332219.1	KEGG: ami:Amir_1335 hypothetical protein
YP_004332220.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: amd:AMED_2115 alkyl hydroperoxide reductase/thiol specific antioxidant
YP_004332221.1	PFAM: Aryldialkylphosphatase; KEGG: rer:RER_52720 phosphatase
YP_004332223.1	KEGG: hch:HCH_06992  nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like
YP_004332224.1	KEGG: sth:STH658 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain
YP_004332225.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: sma:SAV_4277 hypothetical protein
YP_004332226.1	PFAM: NIPSNAP; KEGG: rpx:Rpdx1_2623 NIPSNAP family containing protein
YP_004332227.1	TIGRFAM: Quinone oxidoreductase , YhdH/YhfP; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: acr:Acry_2363 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004332229.1	PFAM: Domain of unknown function DUF861, cupin-3; KEGG: rop:ROP_54960 hypothetical protein
YP_004332230.1	KEGG: ade:Adeh_1681 PE-PGRS family protein
YP_004332231.1	KEGG: gbr:Gbro_2666 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004332232.1	PFAM: Integrase, catalytic core; KEGG: mav:MAV_3533 transposase
YP_004332234.1	KEGG: hch:HCH_06992  nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like
YP_004332235.1	PFAM: Aryldialkylphosphatase; KEGG: rer:RER_52720 phosphatase
YP_004332236.1	PFAM: Domain of unknown function DUF861, cupin-3; KEGG: mkm:Mkms_0992 protein of unknown function DUF861, cupin_3
YP_004332237.1	PFAM: Aldehyde dehydrogenase domain; KEGG: fri:FraEuI1c_2858 aldehyde dehydrogenase
YP_004332238.1	KEGG: fal:FRAAL6082  succinate-semialdehyde dehydrogenase I, NADP-dependent; PFAM: Aldehyde dehydrogenase domain
YP_004332239.1	PFAM: Domain of unknown function DUF1355; KEGG: cdl:CDR20291_0307 hypothetical protein
YP_004332240.1	KEGG: sth:STH770 LacI family transcriptional repressor; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004332241.1	KEGG: ace:Acel_0624 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_004332242.1	TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: cwo:Cwoe_5250 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase
YP_004332243.1	PFAM: Luciferase-like, subgroup; KEGG: sme:SMa0794 monoxygenase
YP_004332244.1	PFAM: Amidohydrolase 1; KEGG: aba:Acid345_1826 Pro-Hyp dipeptidase
YP_004332245.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: scb:SCAB_77421 hydrolase
YP_004332246.1	KEGG: rha:RHA1_ro11047 oxidoreductase; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004332247.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO7518 TetR family transcriptional regulator
YP_004332248.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: sma:SAV_4277 hypothetical protein
YP_004332249.1	PFAM: NIPSNAP; KEGG: bja:bll4801 hypothetical protein
YP_004332250.1	PFAM: Luciferase-like, subgroup; KEGG: sme:SMa0794 monoxygenase
YP_004332251.1	KEGG: ava:Ava_C0148 flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal
YP_004332252.1	PFAM: Domain of unknown function DUF1355; KEGG: cdl:CDR20291_0307 hypothetical protein
YP_004332253.1	KEGG: afw:Anae109_2601 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
YP_004332254.1	KEGG: hch:HCH_06992  nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like
YP_004332255.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: amd:AMED_1631 purine nucleosidase
YP_004332256.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3740 binding-protein-dependent transport systems inner membrane component
YP_004332257.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3739 binding-protein-dependent transport systems inner membrane component
YP_004332258.1	KEGG: kra:Krad_0942 ABC transporter related; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core
YP_004332259.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mes:Meso_3737 extracellular solute-binding protein
YP_004332260.1	KEGG: mav:MAV_3809 dibenzothiophene desulfurization enzyme A; TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; PFAM: Alpha/beta hydrolase fold-1
YP_004332261.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4004  nucleoside-diphosphate-sugar epimerases
YP_004332262.1	KEGG: fal:FRAAL2482  alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup
YP_004332263.1	PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: fre:Franean1_3756 acyl-CoA dehydrogenase type 2
YP_004332264.1	PFAM: Luciferase-like, subgroup; KEGG: ara:Arad_8012 oxidoreductase
YP_004332265.1	KEGG: bbr:BB1545  biotin sulfoxide reductase; PFAM: Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase
YP_004332266.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fri:FraEuI1c_2012 transcriptional regulator, LysR family
YP_004332267.1	KEGG: fre:Franean1_2021 hypothetical protein
YP_004332268.1	KEGG: fal:FRAAL3862 thiosulfate sulfurtransferase (partial match); PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; Rhodanese-like; SMART: Rhodanese-like
YP_004332269.1	KEGG: fal:FRAAL3868  alkanesulfonate monooxygenase
YP_004332270.1	KEGG: fal:FRAAL3861  glycolate oxidoreductase (partial match); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004332271.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: stp:Strop_2788 hypothetical protein
YP_004332272.1	KEGG: sen:SACE_0755 cobalamin synthesis CobW-like protein; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_004332273.1	TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: mab:MAB_0333c 50S ribosomal protein L33; PFAM: Ribosomal protein L33
YP_004332274.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004332276.1	PFAM: Protein of unknown function DUF1345; KEGG: rer:RER_34620 hypothetical protein
YP_004332277.1	KEGG: scb:SCAB_84581 hypothetical protein
YP_004332278.1	TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: sma:SAV_7237 molecular chaperone DnaK; PFAM: Heat shock protein 70
YP_004332279.1	KEGG: sma:SAV_7238 GrpE homologue; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor
YP_004332280.1	KEGG: sma:SAV_7239 heat shock protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004332281.1	KEGG: sro:Sros_4025 hypothetical protein
YP_004332282.1	TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: sma:SAV_7241 ATP-dependent Clp protease; SMART: ATPase, AAA+ type, core
YP_004332283.1	KEGG: rha:RHA1_ro06703 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004332284.1	KEGG: fri:FraEuI1c_6454 hypothetical protein
YP_004332285.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain; KEGG: sma:SAV_7243 thioredoxin reductase; SMART: Cyclic nucleotide-binding domain
YP_004332286.1	KEGG: scb:SCAB_8981 LuxR family regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004332287.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: nfa:pnf1280  cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_004332289.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bcv:Bcav_0861 major facilitator superfamily MFS_1
YP_004332290.1	KEGG: svi:Svir_05780 MIP family channel protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein
YP_004332291.1	KEGG: rha:RHA1_ro02996 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type
YP_004332292.1	KEGG: rha:RHA1_ro08511 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal
YP_004332293.1	KEGG: nml:Namu_2880 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004332294.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: reu:Reut_A1585 4-hydroxyphenylacetate 3-hydroxylase
YP_004332295.1	KEGG: msm:MSMEG_4430 transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004332296.1	KEGG: cwo:Cwoe_0945 flavin reductase domain protein FMN-binding protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004332297.1	PFAM: YCII-related; KEGG: mmi:MMAR_4112 hypothetical protein
YP_004332298.1	PFAM: Uncharacterised protein family YphA; KEGG: sgr:SGR_824 hypothetical protein
YP_004332299.1	KEGG: fal:FRAAL2457  short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332300.1	KEGG: pol:Bpro_5565 flavin-containing monooxygenase FMO
YP_004332301.1	KEGG: rpa:RPA3462 thiolase
YP_004332302.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bja:blr3928 hypothetical protein
YP_004332303.1	KEGG: rpd:RPD_3312 CoA-binding; PFAM: CoA-binding; SMART: CoA-binding
YP_004332304.1	KEGG: rha:RHA1_ro06956 hypothetical protein
YP_004332305.1	KEGG: svi:Svir_24560 flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup
YP_004332306.1	KEGG: nml:Namu_2352 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332307.1	PFAM: Protein of unknown function DUF1486; KEGG: mjl:Mjls_3367 hypothetical protein
YP_004332309.1	KEGG: bts:Btus_1282 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004332310.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: mpt:Mpe_A2657 hypothetical protein
YP_004332311.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: sme:SMa1329 peptidase
YP_004332312.1	PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; KEGG: rop:ROP_46620  Fis family transcriptional regulator
YP_004332313.1	KEGG: art:Arth_3959 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004332314.1	KEGG: fre:Franean1_4489 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332315.1	KEGG: tcu:Tcur_4169 hypothetical protein
YP_004332316.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sen:SACE_7338 zinc-binding oxidoreductase; SMART: Polyketide synthase, enoylreductase
YP_004332317.1	manually curated; KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004332318.1	KEGG: sti:Sthe_0231 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004332319.1	KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004332320.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mkm:Mkms_0332 short-chain dehydrogenase/reductase SDR
YP_004332321.1	KEGG: nml:Namu_3427 epoxide hydrolase domain-containing protein; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1
YP_004332322.1	PFAM: ATPase, AAA-5; KEGG: nml:Namu_2354 ATPase
YP_004332323.1	KEGG: nml:Namu_2355 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004332324.1	KEGG: rop:ROP_46670 carveol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332325.1	KEGG: rop:ROP_31020 hypothetical protein
YP_004332326.1	PFAM: ABC transporter-like; ABC transporter permease; KEGG: cwo:Cwoe_3938 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004332327.1	PFAM: ABC transporter permease; KEGG: rop:ROP_31040  ABC transporter permease
YP_004332328.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rha:RHA1_ro08833 epoxide hydrolase
YP_004332329.1	PFAM: Aldehyde-lyase domain; KEGG: rop:ROP_33640  oxidoreductase/aldolase
YP_004332330.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: rxy:Rxyl_2379 zinc-binding alcohol dehydrogenase
YP_004332331.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: swi:Swit_3304 xylose isomerase domain-containing protein
YP_004332332.1	KEGG: rop:ROP_31020 hypothetical protein
YP_004332333.1	KEGG: rha:RHA1_ro08833 epoxide hydrolase; manually curated; PFAM: Alpha/beta hydrolase fold-1
YP_004332334.1	KEGG: fra:Francci3_2500 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004332335.1	PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; KEGG: amd:AMED_5732 transport integral membrane protein
YP_004332336.1	KEGG: fre:Franean1_1870 helix-turn-helix type 11 domain-containing protein
YP_004332337.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mav:MAV_1244 glyoxalase protein
YP_004332338.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fri:FraEuI1c_3931 GCN5-related N-acetyltransferase
YP_004332339.1	KEGG: azc:AZC_1411 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type
YP_004332340.1	PFAM: 4-oxalocrotonate tautomerase
YP_004332341.1	KEGG: ava:Ava_4328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332342.1	KEGG: cwo:Cwoe_3227 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase
YP_004332343.1	PFAM: Signal transduction response regulator, C-terminal; Bacterial transcriptional activator domain; KEGG: ach:Achl_4571 transcriptional activator domain protein
YP_004332344.1	KEGG: ach:Achl_4570 flavin reductase domain protein FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004332345.1	KEGG: bch:Bcen2424_5833 ATP-dependent transcription regulator LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004332346.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: reu:Reut_A1585 4-hydroxyphenylacetate 3-hydroxylase
YP_004332347.1	KEGG: rpa:RPA2149  hydroxyquinol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal
YP_004332348.1	KEGG: rop:ROP_11540  ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004332349.1	PFAM: O-acyltransferase, WSD1, N-terminal; KEGG: nml:Namu_4293 hypothetical protein
YP_004332350.1	PFAM: UspA; KEGG: sen:SACE_2444  universal stress protein
YP_004332351.1	KEGG: amd:AMED_5479 hypothetical protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004332352.1	KEGG: gob:Gobs_3546 transmembrane protein
YP_004332353.1	PFAM: Protein of unknown function DUF2078, membrane; KEGG: mgi:Mflv_5393 hypothetical protein
YP_004332356.1	KEGG: ami:Amir_2412 hypothetical protein
YP_004332357.1	KEGG: tcu:Tcur_0499 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
YP_004332358.1	KEGG: ami:Amir_6098 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004332359.1	KEGG: cai:Caci_2703 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004332360.1	KEGG: sti:Sthe_0758 hypothetical protein
YP_004332361.1	PFAM: Domain of unknown function DUF1918; KEGG: sen:SACE_2460 hypothetical protein
YP_004332362.1	KEGG: nml:Namu_1797 hypothetical protein
YP_004332363.1	KEGG: nml:Namu_2007 hypothetical protein
YP_004332364.1	PFAM: UspA; KEGG: amd:AMED_5478 universal stress protein
YP_004332365.1	KEGG: sro:Sros_4105 hypothetical protein
YP_004332366.1	KEGG: kfl:Kfla_0222 hypothetical protein
YP_004332367.1	PFAM: Uncharacterised protein family UPF0126; KEGG: mgi:Mflv_0991 hypothetical protein
YP_004332369.1	PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: svi:Svir_32600 glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
YP_004332370.1	KEGG: bid:Bind_1827 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004332372.1	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: svi:Svir_31810 transcription elongation factor GreA
YP_004332373.1	KEGG: rha:RHA1_ro08274 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004332374.1	KEGG: tcu:Tcur_1126 response regulator receiver modulated serine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; Protein phosphatase 2C-like
YP_004332375.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: saq:Sare_2243 anti-sigma-factor antagonist
YP_004332376.1	KEGG: amd:AMED_4131 chemotaxis-specific methylesterase CheB; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase
YP_004332377.1	SMART: MCP methyltransferase, CheR-type; PAS; TIGRFAM: PAS; KEGG: amd:AMED_4133 chemotaxis protein methyltransferase CheR; PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PAS fold-4; PAS fold
YP_004332379.1	PFAM: ATPase-like, ATP-binding domain; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: ami:Amir_1818  signal transduction histidine kinase
YP_004332380.1	KEGG: amd:AMED_4134 hypothetical protein
YP_004332382.1	KEGG: gob:Gobs_3601 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004332384.1	KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like
YP_004332385.1	KEGG: bxe:Bxe_A2358 hypothetical protein; PFAM: CoA-transferase III
YP_004332386.1	KEGG: rxy:Rxyl_0276 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004332387.1	TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; Signal transduction response regulator, receiver domain; Protein phosphatase 2C-like
YP_004332388.1	PFAM: ABC transporter-like; KEGG: mta:Moth_1861 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004332389.1	KEGG: mta:Moth_1862 cobalt ABC transporter CbiQ, permease subunit; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein
YP_004332390.1	PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; KEGG: mta:Moth_1863 cobalt transport protein CbiM
YP_004332391.1	KEGG: amd:AMED_8813 high-affinity nickel-transport protein; TIGRFAM: Nickel/cobalt transporter, high-affinity, bacteria; PFAM: Nickel/cobalt transporter, high-affinity
YP_004332392.1	KEGG: sno:Snov_0060 peroxidase; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal
YP_004332393.1	PFAM: Drug/metabolite transporter; KEGG: msm:MSMEG_3416 protein of unknown function DUF6, transmembrane
YP_004332394.1	KEGG: mil:ML5_4930 carbohydrate kinase, yjef related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; PFAM: Uncharacterised protein family, carbohydrate kinase-related
YP_004332395.1	KEGG: mau:Micau_3460 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004332396.1	KEGG: gbr:Gbro_0721 glycosyltransferase-like protein
YP_004332397.1	PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: req:REQ_26890 hypothetical protein
YP_004332398.1	PFAM: Glycosyl transferase, group 1; KEGG: rha:RHA1_ro00092 glycosyltransferase
YP_004332399.1	KEGG: gbr:Gbro_0724 hypothetical protein
YP_004332400.1	KEGG: gob:Gobs_3356 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_004332401.1	PFAM: ANTAR; KEGG: sen:SACE_1903 response regulator receiver/ANTAR domain-containing protein
YP_004332404.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: amd:AMED_4525 CorA-like  magnesium transport protein
YP_004332405.1	KEGG: gob:Gobs_4976 hypothetical protein
YP_004332407.1	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: cef:CE2760 hypothetical protein
YP_004332408.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_2810 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004332409.1	KEGG: kra:Krad_0034 hypothetical protein
YP_004332410.1	PFAM: ATPase-like, ATP-binding domain; KEGG: ami:Amir_5361  anti-sigma regulatory factor, serine/threonine protein kinase
YP_004332411.1	KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3
YP_004332412.1	KEGG: mil:ML5_5540 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004332413.1	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: fre:Franean1_1430 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain
YP_004332414.1	KEGG: gym:GYMC10_4043 transcriptional regulator, TraR/DksA family
YP_004332415.1	KEGG: amd:AMED_7729 cytochrome c oxidase subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_004332417.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_3042 TetR family transcriptional regulator
YP_004332418.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: amd:AMED_3041 carbon-monoxide dehydrogenase small subunit
YP_004332419.1	KEGG: amd:AMED_3040 carbon-monoxide dehydrogenase medium subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding
YP_004332420.1	KEGG: sen:SACE_4618 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004332421.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: sro:Sros_5491 NAD-dependent epimerase/dehydratase
YP_004332422.1	KEGG: sgr:SGR_6670  dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004332423.1	KEGG: amd:AMED_5201 signal transduction protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004332424.1	KEGG: kfl:Kfla_4219 catalase; PFAM: Catalase, manganese
YP_004332425.1	PFAM: Protein of unknown function DUF2260; KEGG: nda:Ndas_3470 protein of unknown function DUF2260
YP_004332426.1	KEGG: nda:Ndas_3469 hypothetical protein
YP_004332427.1	PFAM: Iron sulphur-containing domain, CDGSH-type; KEGG: nda:Ndas_3468 iron sulfur domain-containing, CDGSH-type
YP_004332428.1	KEGG: kra:Krad_3360  methylase; TIGRFAM:  methylase; PFAM: Methyltransferase small
YP_004332430.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fri:FraEuI1c_3106 extracellular solute-binding protein family 5
YP_004332431.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3107 binding-protein-dependent transport systems inner membrane component
YP_004332432.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3108 binding-protein-dependent transport systems inner membrane component
YP_004332433.1	PFAM: Luciferase-like, subgroup; KEGG: ske:Sked_34610 F420-dependent methylene-tetrahydromethanopterin reductase
YP_004332435.1	PFAM: ANTAR; KEGG: gob:Gobs_3633 ANTAR domain-containing protein
YP_004332436.1	manually curated; PFAM: GAF; ANTAR; KEGG: fre:Franean1_0255  GAF sensor protein; SMART: GAF
YP_004332437.1	KEGG: amd:AMED_5210 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase; TIGRFAM: Glucose-6-phosphate dehydrogenase-related, F420-dependent; PFAM: Luciferase-like, subgroup
YP_004332438.1	KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3
YP_004332439.1	KEGG: svi:Svir_34940 fused histidine kinase with GAF domain/SpoIIE-like protein; PFAM: Sporulation stage II, protein E C-terminal; GAF; ATPase-like, ATP-binding domain; SMART: Protein phosphatase 2C-like; GAF
YP_004332440.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: svi:Svir_34950 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
YP_004332442.1	KEGG: rha:RHA1_ro00704 hypothetical protein
YP_004332443.1	KEGG: mjl:Mjls_2373 hypothetical protein
YP_004332444.1	PFAM: Streptomyces cyclase/dehydrase; KEGG: rha:RHA1_ro03411 hypothetical protein
YP_004332445.1	KEGG: sen:SACE_0974 gas vesicle synthesis-like protein; HAMAP: Gas vesicle structural protein; PFAM: Gas vesicle protein GvpA
YP_004332446.1	PFAM: Gas vesicle protein GvpL/GvpF; KEGG: sen:SACE_0973 gas vesicle synthesis GvpLGvpF
YP_004332447.1	KEGG: req:REQ_25930 gas vesicle protein GvpG
YP_004332448.1	PFAM: Gas vesicle protein GvpO; KEGG: sen:SACE_0971 hypothetical protein
YP_004332449.1	PFAM: Gas vesicle protein GvpA; KEGG: sro:Sros_6859 hypothetical protein
YP_004332450.1	PFAM: Gas vesicle protein GvpL/GvpF; KEGG: msm:MSMEG_5746 gas vesicle protein
YP_004332451.1	PFAM: Gas vesicle protein GvpA; KEGG: req:REQ_25970 gas vesicle protein
YP_004332452.1	PFAM: Gas vesicle protein GvpK; KEGG: msm:MSMEG_5744 gas vesicle protein K
YP_004332455.1	KEGG: ami:Amir_2567  acyl-CoA dehydrogenase-related protein
YP_004332456.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; Methyltransferase type 12; KEGG: ami:Amir_2568 LmbE family protein
YP_004332457.1	KEGG: aau:AAur_3425 glycosyl transferase, group 2 family protein
YP_004332458.1	PFAM: Ferritin/Dps protein; KEGG: kra:Krad_1159 ferritin Dps family protein
YP_004332459.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: pth:PTH_2396 transposase and inactivated derivatives
YP_004332460.1	KEGG: rxy:Rxyl_2073 hypothetical protein
YP_004332461.1	KEGG: ank:AnaeK_0832 DNA ligase D
YP_004332462.1	KEGG: scb:SCAB_23781 hypothetical protein
YP_004332463.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004332464.1	KEGG: rop:ROP_00170  arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight
YP_004332465.1	KEGG: sen:SACE_5143 arsenical resistance protein/arsenate reductase; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter
YP_004332466.1	KEGG: amd:AMED_0760 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004332467.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_4982 integral membrane transport protein
YP_004332468.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sen:SACE_4981 flavin binding monooxygenase
YP_004332469.1	KEGG: rop:ROP_00080  ArsR family transcriptional regulator; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004332471.1	KEGG: kfl:Kfla_3821 hypothetical protein
YP_004332472.1	KEGG: kra:Krad_0228 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004332473.1	KEGG: sen:SACE_3564 polysulphide reductase, NrfD
YP_004332474.1	PFAM: 4Fe-4S binding domain; KEGG: sen:SACE_3563 4Fe-4S ferredoxin, iron-sulfur binding protein
YP_004332475.1	KEGG: nda:Ndas_0021 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; manually curated; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_004332476.1	KEGG: amd:AMED_4268 flavodoxin-like protein
YP_004332477.1	KEGG: mjl:Mjls_1517 methylenetetrahydrofolate reductase
YP_004332478.1	PFAM: Methyltransferase type 11; KEGG: mgi:Mflv_3460 methyltransferase type 11
YP_004332479.1	KEGG: rha:RHA1_ro03148 hypothetical protein
YP_004332480.1	PFAM: Polyketide cyclase/dehydrase; KEGG: ami:Amir_1760 hypothetical protein
YP_004332481.1	PFAM: FAD dependent oxidoreductase; KEGG: amd:AMED_4286 FAD-dependent oxidoreductase
YP_004332482.1	KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3
YP_004332484.1	KEGG: amd:AMED_3305 pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004332485.1	KEGG: gbm:Gbem_0994 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004332486.1	KEGG: sro:Sros_9028 hypothetical protein
YP_004332487.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0850  short-chain dehydrogenase/reductase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004332488.1	KEGG: sma:SAV_654 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain
YP_004332489.1	KEGG: sma:SAV_655 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004332490.1	PFAM: Uncharacterised protein family YphA; KEGG: sco:SCO0201 integral membrane protein SCJ1213c
YP_004332491.1	KEGG: fre:Franean1_1969 GAF sensor signal transduction histidine kinase; PFAM: GAF; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: GAF
YP_004332492.1	KEGG: cai:Caci_6674 hypothetical protein
YP_004332493.1	PFAM: Nitroreductase-like; KEGG: ami:Amir_2414 nitroreductase
YP_004332494.1	PFAM: Cystathionine beta-synthase, core; KEGG: mka:MK1245 CBS domain-containing protein
YP_004332495.1	PFAM: FAD dependent oxidoreductase; KEGG: afv:AFLA_059740 hypothetical protein
YP_004332496.1	KEGG: amd:AMED_3027 penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_004332497.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: gob:Gobs_1039 alpha/beta hydrolase fold protein
YP_004332498.1	KEGG: gob:Gobs_1040 FAD dependent oxidoreductase
YP_004332499.1	KEGG: gob:Gobs_1836 GAF modulated sigma54 specific transcriptional regulator, Fis family; manually curated; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type
YP_004332500.1	KEGG: amd:AMED_0570 hypothetical protein
YP_004332501.1	KEGG: nml:Namu_4674 peptidase S1 and S6 chymotrypsin/Hap; PFAM: PDZ/DHR/GLGF; Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF
YP_004332502.1	PFAM: Cation/H+ exchanger; KEGG: nml:Namu_0334 sodium/hydrogen exchanger
YP_004332503.1	PFAM: Crotonase, core; KEGG: fal:FRAAL2442 enoyl CoA dehydratase/isomerase
YP_004332505.1	KEGG: aac:Aaci_2310 integral membrane sensor signal transduction histidine kinase
YP_004332506.1	PFAM: Isochorismatase-like; KEGG: met:M446_1936 isochorismatase hydrolase
YP_004332507.1	KEGG: sma:SAV_4857 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004332509.1	PFAM: Amidase; KEGG: sna:Snas_3274 amidase
YP_004332510.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: nml:Namu_4764 transposase IS111A/IS1328/IS1533
YP_004332512.1	KEGG: kra:Krad_2500 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332514.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: cwo:Cwoe_2300 5-oxoprolinase (ATP-hydrolyzing)
YP_004332515.1	KEGG: sti:Sthe_2892 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004332516.1	KEGG: msm:MSMEG_4044 GAF domain-containing protein; PFAM: GAF; SMART: GAF
YP_004332517.1	KEGG: mab:MAB_1600c hypothetical protein
YP_004332519.1	KEGG: pla:Plav_3077 hypothetical protein
YP_004332520.1	KEGG: xau:Xaut_1704 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332521.1	PFAM: Glycine cleavage T-protein, N-terminal; KEGG: svi:Svir_11650 aminomethyltransferase
YP_004332522.1	PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: svi:Svir_38370 protocatechuate 4,5-dioxygenase alpha subunit
YP_004332523.1	KEGG: svi:Svir_38360 protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
YP_004332524.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: amd:AMED_2250 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004332525.1	PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: pzu:PHZ_c3010 adenosine deaminase
YP_004332526.1	KEGG: cwo:Cwoe_0946 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004332527.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: cai:Caci_5118 aldo/keto reductase
YP_004332528.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mpa:MAP4047 hypothetical protein
YP_004332529.1	KEGG: kra:Krad_4116 Cna B domain protein
YP_004332530.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_3472 major facilitator transporter
YP_004332531.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_3455 TetR family transcriptional regulator
YP_004332532.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bja:bll7906  ferredoxin
YP_004332533.1	KEGG: cfl:Cfla_0281 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004332534.1	PFAM: Peptidase M24, structural domain; KEGG: rpb:RPB_4421 peptidase M24
YP_004332535.1	PFAM: Amidohydrolase 2; KEGG: rlt:Rleg2_6338 amidohydrolase 2
YP_004332536.1	PFAM: Luciferase-like, subgroup; KEGG: nfa:nfa32900 hypothetical protein
YP_004332537.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_1616 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004332538.1	KEGG: sro:Sros_3030 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004332539.1	PFAM: ABC transporter permease; KEGG: rpt:Rpal_1423 inner-membrane translocator
YP_004332540.1	PFAM: Extracellular ligand-binding receptor; KEGG: adg:Adeg_1594 extracellular ligand-binding receptor
YP_004332541.1	KEGG: bge:BC1002_6024 ABC transporter related protein; PFAM: ABC transporter-like; ABC transporter permease; SMART: ATPase, AAA+ type, core
YP_004332542.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pjd:Pjdr2_0210 transcriptional regulator, TetR family
YP_004332543.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004332544.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mno:Mnod_3485 transcriptional regulator, LysR family
YP_004332545.1	KEGG: nca:Noca_0418 ribonuclease H; PFAM: Ribonuclease H domain
YP_004332546.1	KEGG: sco:SCO7720 hypothetical protein
YP_004332547.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO7719 TetR family transcriptional regulator
YP_004332548.1	KEGG: rca:Rcas_2128 protein serine/threonine phosphatase
YP_004332549.1	KEGG: mgi:Mflv_1496 hypothetical protein
YP_004332551.1	KEGG: rpt:Rpal_3952  thiolase
YP_004332552.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: vei:Veis_4005 hypothetical protein
YP_004332553.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: rop:ROP_13650 hypothetical protein
YP_004332554.1	PFAM:  cyclase; KEGG: nca:Noca_1165 cyclase protein
YP_004332555.1	KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004332556.1	KEGG: sti:Sthe_0231 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004332557.1	KEGG: tro:trd_A0777 carbon monoxide dehydrogenase medium chain (CO dehydrogenase subunit M) (CO-DH M); PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004332558.1	KEGG: tro:trd_A0077 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004332559.1	KEGG: mva:Mvan_5250 hypothetical protein
YP_004332560.1	PFAM: Crotonase, core; KEGG: lch:Lcho_2453 enoyl-CoA hydratase/isomerase
YP_004332561.1	KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3
YP_004332562.1	KEGG: msp:Mspyr1_05110 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004332563.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: ami:Amir_4893 transcriptional regulator, LysR family
YP_004332564.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rrs:RoseRS_2516 methionine synthase, vitamin-B12 independent
YP_004332565.1	PFAM:  cyclase; KEGG: nfa:nfa32670  cyclase
YP_004332566.1	PFAM: Aldehyde dehydrogenase domain; KEGG: tcu:Tcur_0539 betaine-aldehyde dehydrogenase
YP_004332567.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: gbr:Gbro_0235 4-oxalocrotonate tautomerase
YP_004332568.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3809 short-chain dehydrogenase/reductase SDR
YP_004332569.1	KEGG: rlt:Rleg2_4436 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004332570.1	PFAM: PEP-utilising enzyme, mobile domain; KEGG: tcu:Tcur_0540 PEP-utilising protein mobile region
YP_004332571.1	KEGG: tpe:Tpen_0588 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding
YP_004332572.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: nfa:nfa53120 hypothetical protein
YP_004332573.1	KEGG: mva:Mvan_0261 luciferase protein; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4879, predicted; PFAM: Luciferase-like, subgroup
YP_004332574.1	KEGG: aac:Aaci_2531 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004332575.1	KEGG: aeh:Mlg_2359 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004332577.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: nde:NIDE2482 dioxygenase, ferredoxin subunit
YP_004332578.1	KEGG: aac:Aaci_1617 4-oxalocrotonate tautomerase enzyme; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase
YP_004332579.1	KEGG: pth:PTH_0481 2-keto-4-pentenoate hydratase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004332580.1	KEGG: nml:Namu_4085 2-oxopent-4-enoate hydratase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004332581.1	KEGG: tcu:Tcur_0533 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004332583.1	TIGRFAM: Catechol 2,3 dioxygenase; KEGG: bts:Btus_0957 catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004332584.1	TIGRFAM: Catechol 2,3 dioxygenase; KEGG: bts:Btus_0957 catechol 2,3 dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004332585.1	PFAM: Histidine phosphatase superfamily, clade-1
YP_004332586.1	KEGG: tcu:Tcur_0533 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004332587.1	KEGG: fri:FraEuI1c_4130 hypothetical protein
YP_004332588.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_9036  transcriptional regulator, TetR family
YP_004332589.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: ske:Sked_37200 methionine synthase II
YP_004332590.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bts:Btus_0118 transcriptional regulator, TetR family
YP_004332591.1	KEGG: rrs:RoseRS_0765 cytochrome P450; PFAM: Cytochrome P450
YP_004332592.1	KEGG: rop:ROP_29670  acetyl-CoA acyltransferase
YP_004332593.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rop:ROP_29680 hypothetical protein
YP_004332594.1	PFAM: Luciferase-like, subgroup; KEGG: sco:SCP1.240c  monooxygenase, mmyo
YP_004332595.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cwo:Cwoe_3937 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004332596.1	KEGG: fra:Francci3_2245 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332597.1	KEGG: mpd:MCP_1725  phenylacetate-coenzyme A ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332598.1	KEGG: nml:Namu_0834 membrane dipeptidase; PFAM: Peptidase M19, renal dipeptidase
YP_004332600.1	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: fri:FraEuI1c_6883 glutamine amidotransferase class-I
YP_004332601.1	KEGG: msm:MSMEG_5373 nitrilase 2; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004332602.1	PFAM: Glutamine synthetase, catalytic domain; KEGG: msm:MSMEG_5374 glutamate--ammonia ligase
YP_004332603.1	PFAM: Protein of unknown function DUF1097; KEGG: vei:Veis_4948 glutathione-regulated potassium-efflux system protein
YP_004332604.1	KEGG: msm:MSMEG_5375 GntR-family protein transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004332605.1	TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: rop:ROP_15050 L-serine dehydratase; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain
YP_004332606.1	KEGG: rop:ROP_26570 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004332607.1	TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: mmi:MMAR_0209 glycine cleavage system H protein GcvH_1; PFAM: Glycine cleavage H-protein
YP_004332608.1	PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; TIGRFAM: Glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: rop:ROP_26550 glycine cleavage system aminomethyltransferase T
YP_004332609.1	TIGRFAM: Glycine cleavage system P protein, homodimeric; HAMAP: Glycine cleavage system P protein, homodimeric; KEGG: rop:ROP_26540 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; Aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_004332610.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: ami:Amir_3695 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004332611.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_C0598  carboxymuconolactone decarboxylase
YP_004332612.1	KEGG: lch:Lcho_1200 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332613.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: cyj:Cyan7822_4323 hypothetical protein
YP_004332614.1	PFAM: Cytochrome P450; KEGG: bur:Bcep18194_C7583 cytochrome P450-like
YP_004332615.1	KEGG: fre:Franean1_4699 carbon-monoxide dehydrogenase (acceptor); PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004332616.1	KEGG: sti:Sthe_0231 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004332617.1	KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004332618.1	KEGG: bxe:Bxe_A3609 hypothetical protein
YP_004332619.1	KEGG: etr:ETAE_0966 hypothetical protein; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD
YP_004332620.1	KEGG: tfu:Tfu_1296 hypothetical protein
YP_004332621.1	KEGG: tfu:Tfu_1299 dihydroxynaphthoic acid synthase; PFAM: Crotonase, core
YP_004332622.1	KEGG: tfu:Tfu_1300 DitJ-like CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332623.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: htu:Htur_3820 fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_004332624.1	PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A2750 branched chain amino acid ABC transporter periplasmic ligand-binding protein
YP_004332625.1	PFAM: ABC transporter permease; KEGG: sth:STH802 branched-chain amino acid ABC transporter permease
YP_004332626.1	PFAM: ABC transporter-like; ABC transporter permease; KEGG: sti:Sthe_2800 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004332627.1	KEGG: cwo:Cwoe_0429 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004332628.1	TIGRFAM: Thiolase; KEGG: cti:RALTA_A1580 3-ketoacyl-CoA thiolase; (thiolase I, acetyl-CoA transferase); PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004332629.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_5155 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004332630.1	PFAM: Crotonase, core; KEGG: gob:Gobs_2232 enoyl-CoA hydratase/isomerase
YP_004332631.1	KEGG: tfu:Tfu_1282 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004332632.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: sjp:SJA_C1-02580 hypothetical protein
YP_004332633.1	KEGG: tfu:Tfu_1277 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004332634.1	KEGG: bxe:Bxe_A3609 hypothetical protein
YP_004332635.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: amd:AMED_3868 hypothetical protein
YP_004332636.1	KEGG: amd:AMED_3867 hypothetical protein
YP_004332637.1	PFAM: Amidohydrolase 2; KEGG: rlt:Rleg2_6338 amidohydrolase 2
YP_004332638.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gym:GYMC10_1269 Rieske (2Fe-2S) iron-sulphur domain protein
YP_004332639.1	KEGG: msp:Mspyr1_07630 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-dependent synthetase/ligase
YP_004332640.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tfu:Tfu_1298 2-deoxy-D-gluconate 3-dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004332641.1	PFAM: Amidohydrolase 2; KEGG: tfu:Tfu_1297 amidohydrolase protein
YP_004332642.1	KEGG: aac:Aaci_2398 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332643.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rxy:Rxyl_2414 major facilitator transporter
YP_004332644.1	PFAM: Cytochrome P450; KEGG: jan:Jann_2272 cytochrome P450-like
YP_004332645.1	KEGG: fri:FraEuI1c_1873 cytochrome P450; PFAM: Cytochrome P450
YP_004332646.1	KEGG: tfu:Tfu_1466 short-chain alcohol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332647.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cwo:Cwoe_1024 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004332648.1	KEGG: fal:FRAAL3396 hypothetical protein
YP_004332649.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: art:Arth_2287 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
YP_004332650.1	KEGG: ttr:Tter_2008 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004332651.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: nar:Saro_3491 xylose isomerase domain-containing protein
YP_004332652.1	TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: afw:Anae109_2380 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal
YP_004332653.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: req:REQ_06410 aldolase
YP_004332654.1	KEGG: rle:RL3578  L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase
YP_004332655.1	PFAM: Extracellular ligand-binding receptor; KEGG: reh:H16_A3293 ABC-type transporter, periplasmic component
YP_004332656.1	PFAM: ABC transporter permease; KEGG: sth:STH802 branched-chain amino acid ABC transporter permease
YP_004332657.1	PFAM: ABC transporter permease; KEGG: bxe:Bxe_A2754 branched chain amino acid ABC transporter inner membrane protein
YP_004332658.1	PFAM: ABC transporter-like; KEGG: tcu:Tcur_2856 ABC transporter-like protein; SMART: ATPase, AAA+ type, core
YP_004332659.1	PFAM: ABC transporter-like; KEGG: mil:ML5_3917 abc transporter related protein; SMART: ATPase, AAA+ type, core
YP_004332661.1	KEGG: jan:Jann_2271 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332662.1	KEGG: jan:Jann_2269 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332663.1	KEGG: amd:AMED_7167 hypothetical protein
YP_004332664.1	KEGG: nca:Noca_0203 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
YP_004332665.1	PFAM: Transcription regulator TrmB, N-terminal; KEGG: sro:Sros_2039 helix-turn-helix family DUF118
YP_004332666.1	PFAM: FAD dependent oxidoreductase; KEGG: gob:Gobs_3863 FAD dependent oxidoreductase
YP_004332667.1	KEGG: tcu:Tcur_2984 AAA ATPase
YP_004332668.1	PFAM: Uncharacterised conserved protein UCP007542; KEGG: nml:Namu_4958 hypothetical protein
YP_004332669.1	KEGG: amd:AMED_5870 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase
YP_004332670.1	KEGG: fri:FraEuI1c_4693 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004332671.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sma:SAV_4701 TetR family transcriptional regulator
YP_004332672.1	KEGG: sco:SCO3366 exporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004332673.1	PFAM: Ferredoxin soy-like; KEGG: ami:Amir_1960 protein of unknown function DUF1271
YP_004332674.1	KEGG: ami:Amir_1961 cytochrome P450; PFAM: Cytochrome P450
YP_004332675.1	KEGG: nfa:nfa30980 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332676.1	PFAM: Major facilitator superfamily MFS-1; KEGG: mno:Mnod_2777 major facilitator superfamily MFS_1
YP_004332677.1	PFAM: Crotonase, core; KEGG: bxe:Bxe_B2809  enoyl-CoA hydratase/isomerase
YP_004332678.1	TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: bxe:Bxe_B2810  nitrilotriacetate monooxygenase
YP_004332679.1	PFAM: Luciferase-like, subgroup; KEGG: bxe:Bxe_B2811  luciferase-like monooxygenase
YP_004332680.1	PFAM:  cyclase; KEGG: fal:FRAAL6390 hypothetical protein
YP_004332681.1	PFAM: Dihydrodipicolinate synthetase; KEGG: bxe:Bxe_B2813  dihydrodipicolinate synthetase
YP_004332682.1	KEGG: rha:RHA1_ro00274 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004332683.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS
YP_004332684.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: mva:Mvan_1481 anti-sigma-factor antagonist
YP_004332685.1	KEGG: mil:ML5_4830 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004332686.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: mil:ML5_4831 abc transporter related protein; SMART: ATPase, AAA+ type, core
YP_004332687.1	KEGG: amd:AMED_4291 DNA topoisomerase IB
YP_004332688.1	KEGG: nda:Ndas_2013 intracellular protease, PfpI family; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI
YP_004332689.1	TIGRFAM: Thiolase; KEGG: rha:RHA1_ro10318 acetyl-CoA C-acyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004332690.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: ace:Acel_1372 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain
YP_004332691.1	KEGG: gob:Gobs_0834 phage SPO1 DNA polymerase-like protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like
YP_004332693.1	PFAM: Serine/threonine-protein kinase-like domain; KEGG: sro:Sros_3960 serine/threonine protein kinase-like protein; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004332694.1	KEGG: ske:Sked_14980 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related
YP_004332695.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: cwo:Cwoe_3024 transcriptional regulator, LysR family
YP_004332697.1	KEGG: nca:Noca_0239 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core
YP_004332698.1	KEGG: nca:Noca_0238 VWA containing CoxE family protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A
YP_004332700.1	KEGG: nca:Noca_0237 hypothetical protein
YP_004332701.1	KEGG: rop:ROP_41430 hypothetical protein
YP_004332702.1	KEGG: nca:Noca_0236 hypothetical protein
YP_004332703.1	KEGG: nca:Noca_0235 hypothetical protein
YP_004332704.1	KEGG: nca:Noca_0234 hypothetical protein
YP_004332706.1	KEGG: nca:Noca_0233 hypothetical protein
YP_004332707.1	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: nca:Noca_0232 carbon monoxide dehydrogenase subunit G
YP_004332708.1	TIGRFAM: Carbon-monoxide dehydrogenase, large subunit; KEGG: nca:Noca_0230 xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004332709.1	KEGG: nca:Noca_0229 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004332710.1	KEGG: nca:Noca_0228 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004332711.1	KEGG: nca:Noca_0227 hypothetical protein
YP_004332712.1	KEGG: nml:Namu_5284 molybdopterin dehydrogenase FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004332713.1	KEGG: mkm:Mkms_0501 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004332714.1	TIGRFAM: Carbon-monoxide dehydrogenase, large subunit; KEGG: nml:Namu_5287 carbon-monoxide dehydrogenase large subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004332715.1	PFAM: XdhC- CoxI; YHS; KEGG: art:Arth_2038 hypothetical protein
YP_004332716.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0256 transcriptional regulator, TetR family
YP_004332717.1	KEGG: tcu:Tcur_1972 EmrB/QacA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004332718.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nml:Namu_4792 major facilitator superfamily protein
YP_004332719.1	KEGG: fri:FraEuI1c_2609 peptidase M24
YP_004332720.1	KEGG: sen:SACE_2965 haloacid dehalogenase-like hydrolase
YP_004332721.1	KEGG: aoe:Clos_0876 formyl-CoA transferase; PFAM: CoA-transferase III
YP_004332722.1	KEGG: rer:RER_34970 CdaR family transcriptional regulator; PFAM: GAF; SMART: GAF
YP_004332724.1	KEGG: sti:Sthe_2892 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004332725.1	KEGG: sti:Sthe_3498 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase
YP_004332726.1	KEGG: bxe:Bxe_C0850  short-chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332727.1	KEGG: amd:AMED_7123 fatty-acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase
YP_004332728.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_7223 TetR family transcriptional regulator
YP_004332729.1	KEGG: sta:STHERM_c04220 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332730.1	KEGG: fri:FraEuI1c_5330 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332731.1	PFAM: Crotonase, core; KEGG: axy:AXYL_00935 3-hydroxybutyryl-CoA dehydratase 1
YP_004332732.1	KEGG: rop:ROP_25260 flavin-containing monooxygenase
YP_004332733.1	PFAM: Domain of unknown function DUF151; KEGG: gob:Gobs_2724 hypothetical protein
YP_004332734.1	KEGG: amd:AMED_5223 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004332735.1	KEGG: ske:Sked_35010 selenocysteine lyase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004332736.1	KEGG: fal:FRAAL4450  monomeric sarcosine oxidase (MSOX); PFAM: FAD dependent oxidoreductase
YP_004332737.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: req:REQ_02210 alpha/beta hydrolase
YP_004332738.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: sen:SACE_3449 gluconolactonase precursor
YP_004332739.1	KEGG: cag:Cagg_2751 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004332740.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_6256 extracellular solute-binding protein
YP_004332741.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: sen:SACE_3449 gluconolactonase precursor
YP_004332742.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_0863 major facilitator transporter
YP_004332743.1	TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG2256, predicted; KEGG: fal:FRAAL4774 N5,N10-methylenetetrahydromethanopterin reductase-related protein
YP_004332744.1	PFAM: DSBA-like thioredoxin domain; KEGG: svi:Svir_07810 protein-disulfide isomerase
YP_004332745.1	PFAM: Cytochrome P450; KEGG: amd:AMED_3426 cytochrome P450
YP_004332746.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: kfl:Kfla_5208 endonuclease/exonuclease/phosphatase
YP_004332747.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: msp:Mspyr1_02660 dinucleotide-binding enzyme
YP_004332748.1	PFAM: Protein of unknown function DUF1348; KEGG: amd:AMED_1643 hypothetical protein
YP_004332749.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sma:SAV_7471 TetR family transcriptional regulator
YP_004332750.1	TIGRFAM: Phenylacetate-CoA ligase; KEGG: gob:Gobs_1908 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332751.1	TIGRFAM: Phenylacetic acid degradation protein PaaN; KEGG: amd:AMED_1563 phenylacetic acid degradation protein PaaZ; PFAM: MaoC-like dehydratase; Aldehyde dehydrogenase domain
YP_004332752.1	PFAM: Crotonase, core; KEGG: sgr:SGR_2381  enoyl-CoA hydratase/isomerase
YP_004332753.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: scb:SCAB_45331 transcriptional regulator
YP_004332754.1	KEGG: sen:SACE_3544 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: Phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic
YP_004332755.1	KEGG: sen:SACE_3545 phenylacetate-CoA oxygenase subunit PaaB; TIGRFAM: Phenylacetic acid degradation B; PFAM: Phenylacetic acid degradation B
YP_004332756.1	KEGG: sen:SACE_3546  phenylacetic acid degradation protein; TIGRFAM: Phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic
YP_004332757.1	KEGG: sen:SACE_3547 phenylacetic acid degradation protein; TIGRFAM: Phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Domain of unknown function DUF59
YP_004332758.1	TIGRFAM: Phenylacetate-CoA oxygenase/reductase, PaaK subunit; KEGG: sen:SACE_3548  phenylacetic acid degradation NADH oxidoreductase; PFAM: Ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding
YP_004332759.1	KEGG: hmg:100208015 hypothetical protein LOC100208015
YP_004332760.1	PFAM: Major facilitator superfamily MFS-1; KEGG: gob:Gobs_0263 major facilitator superfamily protein
YP_004332761.1	PFAM: Aldose 1-epimerase; KEGG: sen:SACE_0644 aldose-1-epimerase
YP_004332762.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase; KEGG: fra:Francci3_2657 precorrin 6A synthase; PFAM: Tetrapyrrole methylase
YP_004332763.1	KEGG: amd:AMED_6303 metal ion transporter, Nramp family; TIGRFAM: Natural resistance-associated macrophage protein; PFAM: Natural resistance-associated macrophage protein
YP_004332764.1	PFAM: ATPase-like, ATP-binding domain; KEGG: ami:Amir_5361  anti-sigma regulatory factor, serine/threonine protein kinase
YP_004332765.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_7022 TetR family transcriptional regulator
YP_004332766.1	KEGG: rop:ROP_18570 hypothetical protein
YP_004332767.1	PFAM: Ferric-uptake regulator; KEGG: mil:ML5_4698 ferric uptake regulator, fur family
YP_004332768.1	PFAM: Haem peroxidase, plant/fungal/bacterial; TIGRFAM: Catalase-peroxidase haem; HAMAP: Catalase-peroxidase haem; KEGG: amd:AMED_4105 catalase/peroxidase
YP_004332769.1	PFAM: Streptomyces sporulation/cell division protein SsgA; KEGG: amd:AMED_0264 sporulation and cell division protein SsgA
YP_004332770.1	KEGG: ami:Amir_4443 acyl transferase
YP_004332771.1	KEGG: sen:SACE_3902 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332772.1	PFAM: Protein of unknown function DUF1707; KEGG: nfa:nfa41690 hypothetical protein
YP_004332773.1	KEGG: kfl:Kfla_0937 flavin reductase domain protein FMN-binding protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004332774.1	TIGRFAM: Cobalamin biosynthesis CobD/CbiB; HAMAP: Cobalamin biosynthesis CobD/CbiB; KEGG: nml:Namu_0174 cobalamin biosynthesis protein CobD; PFAM: Cobalamin biosynthesis CobD/CbiB
YP_004332775.1	KEGG: sen:SACE_1577 hypothetical protein
YP_004332776.1	TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: ami:Amir_5883 cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ-like glutamine amidotransferase
YP_004332777.1	PFAM: von Willebrand factor, type A; ATPase, AAA-5; KEGG: sen:SACE_5965  magnesium-chelatase subunit; SMART: von Willebrand factor, type A; ATPase, AAA+ type, core
YP_004332778.1	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: amd:AMED_7053 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR
YP_004332779.1	TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; HAMAP: Cobyrinic acid a,c-diamide synthase CbiA; KEGG: ami:Amir_5859 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ-like glutamine amidotransferase
YP_004332780.1	PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; KEGG: tcu:Tcur_1317 precorrin-3B C17-methyltransferase
YP_004332781.1	KEGG: nfa:nfa40770  uroporphyrinogen III methylase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; PFAM: Tetrapyrrole methylase
YP_004332783.1	TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; Cob(II)yrinic acid a,c-diamide reductase; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: sma:SAV_6795 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; Nitroreductase-like
YP_004332784.1	HAMAP: DNA polymerase IV; KEGG: sen:SACE_6234 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_004332785.1	PFAM: DSBA-like thioredoxin domain; KEGG: nml:Namu_0894 DsbA oxidoreductase
YP_004332786.1	TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: gob:Gobs_1802 cyclic nucleotide-binding protein; PFAM: Na+/H+ antiporter NhaA
YP_004332787.1	KEGG: mpt:Mpe_A2676 acetyl-coenzyme A dehydrogenase, medium chain; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1
YP_004332788.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_1946 TetR family transcriptional regulator
YP_004332789.1	KEGG: amd:AMED_1945 hypothetical protein
YP_004332790.1	KEGG: amd:AMED_1944 FAD-dependent oxidoreductase; PFAM: Monooxygenase, FAD-binding
YP_004332791.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: kfl:Kfla_4144 4'-phosphopantetheinyl transferase
YP_004332792.1	PFAM: FAD dependent oxidoreductase; KEGG: azl:AZL_c00540 FAD-dependent oxidoreductase
YP_004332793.1	KEGG: gob:Gobs_4206 cytochrome P450; PFAM: Cytochrome P450
YP_004332794.1	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: rer:RER_52840 3-oxoadipate CoA-transferase beta subunit; PFAM: Coenzyme A transferase
YP_004332795.1	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: req:REQ_33550 3-oxoadipate CoA-transferase ScoA; PFAM: Coenzyme A transferase
YP_004332796.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: cmi:CMM_2866  hydrolase
YP_004332797.1	KEGG: fri:FraEuI1c_1424 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004332798.1	KEGG: fri:FraEuI1c_1425 hypothetical protein
YP_004332799.1	KEGG: rer:RER_52880 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Lyase 1, N-terminal
YP_004332800.1	TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: req:REQ_33600 IclR family transcriptional regulator; SMART: Transcription regulator IclR, N-terminal
YP_004332801.1	KEGG: cwo:Cwoe_0286 hypothetical protein
YP_004332803.1	KEGG: sen:SACE_4209 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004332804.1	KEGG: mrb:Mrub_3035 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like
YP_004332806.1	KEGG: amd:AMED_3870 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004332807.1	PFAM: Cytochrome b/b6, N-terminal; KEGG: ami:Amir_1376 cytochrome b/b6 domain protein
YP_004332808.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: sen:SACE_1686 ubiquinol-cytochrome c reductase iron-sulfur subunit
YP_004332809.1	PFAM: Cytochrome c, class I; KEGG: amd:AMED_2201 ubiquinol-cytochrome c reductase cytochrome c subunit
YP_004332810.1	KEGG: mjl:Mjls_3302 cytochrome c oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III
YP_004332811.1	KEGG: ami:Amir_1371 response regulator receiver protein
YP_004332812.1	PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: sen:SACE_1681 anthranilate phosphoribosyltransferase
YP_004332813.1	PFAM: Transcription regulator AsnC-type, C-terminal; KEGG: svi:Svir_10710 transcriptional regulator, AsnC family
YP_004332814.1	SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: sen:SACE_1689 hypothetical protein; PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal
YP_004332815.1	PFAM: Protein of unknown function DUF901; KEGG: ami:Amir_1379 protein of unknown function DUF901
YP_004332816.1	KEGG: fri:FraEuI1c_1805 hypothetical protein
YP_004332817.1	PFAM: NLP/P60; KEGG: amd:AMED_5872 NLP/P60-family protein
YP_004332818.1	PFAM: Glycosyl transferase, group 1; KEGG: req:REQ_28150 glycosyl transferase 1
YP_004332819.1	KEGG: sen:SACE_1694  long-chain fatty acid ligase; PFAM: AMP-dependent synthetase/ligase
YP_004332820.1	KEGG: amd:AMED_2446 hypothetical protein
YP_004332821.1	PFAM: Metallo-dependent phosphatase; KEGG: amd:AMED_2447 metallophosphoesterase
YP_004332822.1	PFAM: Streptomyces cyclase/dehydrase; KEGG: amd:AMED_2448 cyclase/dehydrase
YP_004332823.1	KEGG: sen:SACE_1698 arsenite-transporting ATPase
YP_004332824.1	KEGG: ami:Amir_1388 hypothetical protein
YP_004332825.1	KEGG: ami:Amir_1389 ROK family protein; PFAM: ROK
YP_004332826.1	KEGG: sen:SACE_1701 hypothetical protein
YP_004332827.1	KEGG: sen:SACE_1702 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004332828.1	KEGG: rpe:RPE_3904  anti-sigma regulatory factor, serine/threonine protein kinase
YP_004332829.1	KEGG: svi:Svir_24810 hypothetical protein
YP_004332830.1	KEGG: gob:Gobs_4779 hypothetical protein
YP_004332831.1	TIGRFAM: DAHP synthetase, class II; KEGG: ami:Amir_1395 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II
YP_004332832.1	PFAM: Serine/threonine-protein kinase-like domain; PASTA; KEGG: nml:Namu_3222 serine/threonine protein kinase with PASTA sensor(s); SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; PASTA
YP_004332833.1	KEGG: sen:SACE_1711 transcriptional regulatory protein
YP_004332834.1	KEGG: ami:Amir_3811 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase
YP_004332835.1	KEGG: ami:Amir_1398 hypothetical protein
YP_004332836.1	KEGG: sen:SACE_1713 phytoene desaturase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Amine oxidase
YP_004332837.1	KEGG: svi:Svir_27930 geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase
YP_004332838.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: sen:SACE_1715 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase
YP_004332839.1	KEGG: ami:Amir_1403 hypothetical protein
YP_004332840.1	KEGG: amd:AMED_2329 hypothetical protein
YP_004332844.1	KEGG: stp:Strop_3242 hypothetical protein
YP_004332845.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sen:SACE_5874 plasmid partitioning protein
YP_004332846.1	PFAM: Methyltransferase type 12; KEGG: ami:Amir_5788 methyltransferase type 12
YP_004332847.1	KEGG: msp:Mspyr1_23110 hypothetical protein
YP_004332848.1	KEGG: sen:SACE_5871 transglutaminase-like; PFAM: Transglutaminase-like; SMART: Transglutaminase-like
YP_004332849.1	PFAM: Domain of unknown function DUF58; KEGG: ami:Amir_5777 protein of unknown function DUF58
YP_004332850.1	PFAM: ATPase, AAA-3; KEGG: ami:Amir_5776 ATPase associated with various cellular activities AAA_3
YP_004332851.1	TIGRFAM: MraZ; HAMAP: MraZ; KEGG: amd:AMED_6261 MraZ protein; PFAM: MraZ domain
YP_004332852.1	TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: sen:SACE_5866 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW
YP_004332853.1	PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sen:SACE_5864  penicillin-binding (cell division related) protein
YP_004332854.1	PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: tpr:Tpau_2651 UDP-N-acetylmuramyl-tripeptide synthetase
YP_004332855.1	TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: ami:Amir_5770 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal
YP_004332856.1	TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: ami:Amir_5769 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site
YP_004332857.1	PFAM: Mur ligase, central; Alcohol dehydrogenase, C-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: ami:Amir_5768 UDP-N-acetylmuramoylalanine/D-glutamate ligase
YP_004332858.1	KEGG: sen:SACE_5852 cell division membrane protein; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein
YP_004332859.1	TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: ami:Amir_5763 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal
YP_004332860.1	PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: ami:Amir_5762 UDP-N-acetylmuramate--L-alanine ligase
YP_004332861.1	PFAM: Polypeptide-transport-associated, FtsQ-type; KEGG: mjl:Mjls_3265 cell division protein FtsQ
YP_004332862.1	TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: sen:SACE_5835 cell division GTPase; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain
YP_004332863.1	KEGG: svi:Svir_27360 conserved hypothetical protein TIGR00726; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase
YP_004332864.1	KEGG: mau:Micau_4469 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal
YP_004332865.1	KEGG: ami:Amir_5757 protein of unknown function DUF552; HAMAP: Cell division protein SepF; PFAM: Cell division protein SepF/SepF-related
YP_004332866.1	PFAM: Uncharacterised protein family Ycf19; KEGG: svi:Svir_27330 YGGT family protein
YP_004332867.1	KEGG: sen:SACE_5830 cell division initiation protein; TIGRFAM: DivIVA domain; PFAM: DivIVA
YP_004332868.1	KEGG: rci:RRC32 hypothetical protein
YP_004332869.1	TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: sen:SACE_5828 isoleucyl-tRNA synthetase
YP_004332870.1	PFAM: SNARE associated Golgi protein; KEGG: amd:AMED_6495 DedA-like membrane protein
YP_004332871.1	PFAM: Conserved hypothetical protein CHP00245; KEGG: mil:ML5_2013 abc transport system permease
YP_004332872.1	PFAM: Methyltransferase type 12; KEGG: tcu:Tcur_3103 type 12 methyltransferase
YP_004332873.1	KEGG: nml:Namu_3868 hypothetical protein
YP_004332874.1	KEGG: sma:SAV_4878 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004332875.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: sma:SAV_4879 two-component system sensor kinase
YP_004332876.1	PFAM: Abortive infection protein; KEGG: nml:Namu_5061 abortive infection protein
YP_004332877.1	KEGG: nml:Namu_5060 hypothetical protein
YP_004332878.1	PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; KEGG: ami:Amir_5749 potassium/proton antiporter
YP_004332879.1	KEGG: sen:SACE_5823 ribosomal large subunit pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4
YP_004332880.1	KEGG: req:REQ_27610 protein
YP_004332881.1	KEGG: ami:Amir_5161 hypothetical protein
YP_004332882.1	KEGG: sen:SACE_0678 integral membrane protein
YP_004332883.1	PFAM: Glycosyl transferase, group 1; KEGG: ami:Amir_5160 glycosyl transferase group 1
YP_004332884.1	SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: ace:Acel_1054 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type
YP_004332885.1	PFAM: Protein of unknown function DUF1486; KEGG: pfs:PFLU3206  dehydratase
YP_004332886.1	PFAM: General substrate transporter; KEGG: bts:Btus_3048 major facilitator superfamily MFS_1
YP_004332887.1	PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal; KEGG: cai:Caci_2009 transcriptional regulator, PaaX family
YP_004332888.1	TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: ami:Amir_5742 adenosylmethionine-8-amino-7-oxononanoateaminotr ansferase; PFAM: Aminotransferase class-III
YP_004332889.1	PFAM: Methyltransferase type 11; KEGG: jan:Jann_3724 methyltransferase type 11
YP_004332890.1	KEGG: mjl:Mjls_3094 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII
YP_004332891.1	KEGG: sen:SACE_0978 dithiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase
YP_004332892.1	KEGG: nfa:nfa18320 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; Biotin/thiamin synthesis-associated protein
YP_004332893.1	KEGG: cai:Caci_7732 hypothetical protein
YP_004332894.1	KEGG: req:REQ_29570 hypothetical protein
YP_004332896.1	KEGG: amd:AMED_2221 ATP-dependent protease Lon; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal
YP_004332897.1	PFAM: NUDIX hydrolase domain; KEGG: ami:Amir_5731 NUDIX hydrolase
YP_004332898.1	PFAM: Quinolinate synthetase A; TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A, type 2; KEGG: msp:Mspyr1_29620 quinolinate synthetase A
YP_004332899.1	TIGRFAM: L-aspartate oxidase; KEGG: ami:Amir_5729 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_004332900.1	TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: ami:Amir_5728 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal
YP_004332901.1	PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: amd:AMED_2251 histidinol dehydrogenase
YP_004332902.1	PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: sen:SACE_5777 histidinol-phosphate aminotransferase
YP_004332903.1	HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: amd:AMED_2253 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_004332904.1	TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: sen:SACE_5761 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal
YP_004332906.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: bbt:BBta_2188 methionine synthase (B12-independent)
YP_004332907.1	PFAM: Histidine biosynthesis; TIGRFAM: Bifunctional HisA/TrpF; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: ami:Amir_5712 phosphoribosyl isomerase A
YP_004332908.1	PFAM: Histidine biosynthesis; TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Histidine biosynthesis, HisF; KEGG: amd:AMED_2282 cyclase HisF
YP_004332909.1	HAMAP: Phosphoribosyl-AMP cyclohydrolase; KEGG: nca:Noca_3032 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase
YP_004332910.1	PFAM: Protein of unknown function DUF2236; KEGG: mkm:Mkms_4278 hypothetical protein
YP_004332911.1	KEGG: kfl:Kfla_6210 hypothetical protein
YP_004332912.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: amd:AMED_2841 two-component system histidine kinase
YP_004332913.1	KEGG: mau:Micau_1043 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004332914.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_5754 TetR family transcriptional regulator
YP_004332915.1	TIGRFAM: Anthranilate synthase component I, PabB-like; KEGG: sen:SACE_5753 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal
YP_004332916.1	PFAM: Trp biosynthesis associated, transmembrane protein, Oprn/Chp; KEGG: cai:Caci_5713 hypothetical protein
YP_004332917.1	KEGG: amd:AMED_2293 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_004332918.1	PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain/beta chain-like; KEGG: amd:AMED_2294 tryptophan synthase beta chain
YP_004332919.1	PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: amd:AMED_2295 tryptophan synthase alpha chain
YP_004332920.1	TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: sen:SACE_5746 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase
YP_004332921.1	KEGG: ami:Amir_5689 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein CHP02453
YP_004332922.1	TIGRFAM: Pyruvate kinase; KEGG: ami:Amir_5687 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like
YP_004332923.1	KEGG: sen:SACE_5719 acyl-CoA thioesterase II; PFAM: Acyl-CoA thioesterase
YP_004332924.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: rha:RHA1_ro05070 hypothetical protein
YP_004332925.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: kra:Krad_3362 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004332926.1	KEGG: bcv:Bcav_3436 CoA-binding domain protein; PFAM: CoA-binding; SMART: CoA-binding
YP_004332928.1	TIGRFAM: Malate dehydrogenase, NAD/NADP; HAMAP: Malate dehydrogenase; KEGG: fri:FraEuI1c_4622 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase, C-terminal; Lactate/malate dehydrogenase, N-terminal
YP_004332929.1	PFAM: CAP domain; KEGG: art:Arth_3166 allergen V5/TPX-1 family protein
YP_004332930.1	PFAM: Domain of unknown function DUF820; KEGG: mil:ML5_3927 hypothetical protein
YP_004332931.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: amd:AMED_2594 maltooligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal
YP_004332932.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose synthase; KEGG: amd:AMED_2593 maltooligosyl trehalose synthase; PFAM: Glycosyl hydrolase, family 13, catalytic domain
YP_004332933.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Glycogen debranching enzyme; KEGG: amd:AMED_2592 glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic domain
YP_004332934.1	KEGG: kfl:Kfla_3151 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; TIGRFAM: F420-binding domain, PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004332935.1	PFAM: Histidine triad (HIT) protein; KEGG: mlu:Mlut_07820 HIT family hydrolase, diadenosine tetraphosphate hydrolase
YP_004332936.1	KEGG: req:REQ_41490 phosphoglycerate/bisphosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004332937.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_1263 hypothetical protein
YP_004332938.1	KEGG: stp:Strop_1435 hypothetical protein
YP_004332939.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: amd:AMED_1262 diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_004332940.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: amd:AMED_1947 GGDEF domain-containing diguanylate cyclase; SMART: Diguanylate cyclase, predicted
YP_004332941.1	KEGG: sen:SACE_1815 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; SMART: Transketolase-like, pyrimidine-binding domain
YP_004332942.1	KEGG: svi:Svir_24140 response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004332943.1	KEGG: sen:SACE_1818 two-component sensor (kinase); PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004332944.1	KEGG: ami:Amir_1548 3'-5' exonuclease; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain; SMART: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain
YP_004332945.1	KEGG: ami:Amir_1549 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004332946.1	KEGG: svi:Svir_24100 hypothetical protein
YP_004332947.1	PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: amd:AMED_2643 uroporphyrinogen-III decarboxylase
YP_004332948.1	TIGRFAM: Protoporphyrinogen oxidase; KEGG: ami:Amir_1553 protoporphyrinogen oxidase; PFAM: Amine oxidase
YP_004332949.1	PFAM: Chlorite dismutase; KEGG: svi:Svir_24070 hypothetical protein
YP_004332950.1	PFAM: LysR, substrate-binding; KEGG: kfl:Kfla_3836 transcriptional regulator, LysR family
YP_004332951.1	manually curated; KEGG: sen:SACE_4610 hypothetical protein
YP_004332952.1	TIGRFAM: Methionine sulphoxide reductase B; KEGG: rop:ROP_68470 peptide methionine sulfoxide reductase MsrB; PFAM: Methionine sulphoxide reductase B
YP_004332953.1	KEGG: svi:Svir_24050 hypothetical protein
YP_004332954.1	KEGG: sen:SACE_1849 DNA ligase (ATP); TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit
YP_004332956.1	PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; KEGG: sen:SACE_1857 proteinase (secreted protein)
YP_004332957.1	KEGG: sen:SACE_1862 hypothetical protein
YP_004332958.1	KEGG: sen:SACE_1863 hypothetical protein
YP_004332959.1	KEGG: sen:SACE_1864 hypothetical protein
YP_004332960.1	KEGG: sen:SACE_1865 hypothetical protein
YP_004332961.1	KEGG: fal:FRAAL6273 GTP-binding protein
YP_004332962.1	KEGG: sen:SACE_1867 hypothetical protein
YP_004332963.1	PFAM: Alkaline shock protein Asp23; KEGG: sen:SACE_1868 stress-like protein
YP_004332964.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: ami:Amir_1580 bifunctional deaminase-reductase domain protein
YP_004332965.1	PFAM: ABC transporter permease; KEGG: sro:Sros_7986 ABC transporter, permease, Fe3+-siderophore transport system
YP_004332966.1	PFAM: ABC transporter permease; KEGG: sen:SACE_0412 Fe(3+) enterobactin transport system permease
YP_004332967.1	PFAM: ABC transporter-like; KEGG: sro:Sros_7988 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004332968.1	KEGG: nml:Namu_3539 hypothetical protein; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related
YP_004332969.1	PFAM: Phosphate transporter; KEGG: sro:Sros_0892 phosphate transporter
YP_004332970.1	PFAM: Putitive phosphate transport regulator; KEGG: sgr:SGR_3928  Pit accessory protein
YP_004332971.1	PFAM: FAD linked oxidase, N-terminal; KEGG: sen:SACE_1991 FAD linked oxidase-like protein
YP_004332972.1	PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; KEGG: sen:SACE_1992 cyclopropane-fatty-acyl-phospholipid synthase; SMART: Polyketide synthase, methyltransferase domain
YP_004332973.1	KEGG: sen:SACE_6439 hypothetical protein; TIGRFAM: Acyltransferase, WS/DGAT/MGAT; PFAM: O-acyltransferase, WSD1, N-terminal
YP_004332974.1	PFAM: Protein of unknown function DUF2252; KEGG: srt:Srot_2797 hypothetical protein
YP_004332975.1	KEGG: eli:ELI_02000 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004332976.1	PFAM: Amidohydrolase 2; KEGG: tbi:Tbis_1611 amidohydrolase 2
YP_004332977.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cfl:Cfla_0293 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004332978.1	KEGG: ami:Amir_1569 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004332979.1	KEGG: mjl:Mjls_1207 dehydratase; PFAM: MaoC-like dehydratase
YP_004332980.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_3398 extracellular solute-binding protein
YP_004332981.1	PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: ami:Amir_0874 fructosamine kinase
YP_004332982.1	KEGG: sen:SACE_1579  low molecular weight protein-tyrosine-phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight
YP_004332983.1	PFAM: Aminotransferase, class I/classII; KEGG: sen:SACE_1581 hypothetical protein
YP_004332984.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: nml:Namu_4764 transposase IS111A/IS1328/IS1533
YP_004332985.1	KEGG: ami:Amir_0879 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3
YP_004332986.1	PFAM: Protein of unknown function DUF164; KEGG: ami:Amir_0880 protein of unknown function DUF164
YP_004332987.1	KEGG: req:REQ_28750 RNase H domain phosphoglycerate/bisphosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004332988.1	PFAM: Divalent ion symporter; KEGG: mjl:Mjls_5120 arsenical pump membrane protein
YP_004332989.1	PFAM: Protein of unknown function DUF81; KEGG: sen:SACE_1215 hypothetical protein
YP_004332990.1	KEGG: amd:AMED_5856 predicted HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_004332991.1	KEGG: sen:SACE_5712 retron-type reverse transcriptase; PFAM: Reverse transcriptase
YP_004332992.1	KEGG: ske:Sked_13370  acyltransferase
YP_004332993.1	KEGG: cwo:Cwoe_3319 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004332994.1	KEGG: scb:SCAB_9041 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004332995.1	KEGG: sro:Sros_2497  transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Tetracycline transcriptional regulator, TetR, C-terminal; SMART: HTH transcriptional regulator, GntR
YP_004332996.1	PFAM: Monooxygenase, FAD-binding; KEGG: kfl:Kfla_5841 monooxygenase FAD-binding protein
YP_004332997.1	KEGG: ach:Achl_0605 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain
YP_004332998.1	KEGG: tfu:Tfu_0359 peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2
YP_004332999.1	KEGG: cai:Caci_5446 hypothetical protein
YP_004333000.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nfa:nfa35310 hypothetical protein
YP_004333001.1	KEGG: bbt:BBta_3103  acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004333002.1	KEGG: hse:Hsero_0938 AraC family transcription regulator protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004333003.1	KEGG: amd:AMED_2797 hypothetical protein
YP_004333004.1	KEGG: gob:Gobs_0880 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004333005.1	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: gbr:Gbro_4318 carbon monoxide dehydrogenase subunit G
YP_004333006.1	KEGG: sro:Sros_6595 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004333007.1	KEGG: cai:Caci_1877 hydantoinase B/oxoprolinase; PFAM: Hydantoinase B/oxoprolinase
YP_004333008.1	KEGG: nca:Noca_0687 regulatory proteins, IclR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333009.1	PFAM: ABC transporter-like; KEGG: req:REQ_19950 abc transporter atpase suunit; SMART: ATPase, AAA+ type, core
YP_004333010.1	PFAM: ABC transporter permease; KEGG: eca:ECA1461  sugar ABC transporter permease
YP_004333011.1	KEGG: dap:Dacet_0219 periplasmic binding protein/LacI transcriptional regulator
YP_004333012.1	KEGG: sti:Sthe_2308 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004333013.1	KEGG: fri:FraEuI1c_5530 (2Fe-2S)-binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004333014.1	KEGG: tro:trd_0579 oxidoreductase, large chain; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004333015.1	KEGG: hel:HELO_1462 hypothetical protein
YP_004333016.1	KEGG: nda:Ndas_2606 carboxyl transferase; PFAM: Carboxyl transferase
YP_004333017.1	PFAM: Amidase; KEGG: rxy:Rxyl_0238 amidase
YP_004333018.1	PFAM: Creatininase; KEGG: bha:BH0226 creatinine amidohydrolase
YP_004333019.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bpy:Bphyt_4245 Rieske (2Fe-2S) domain protein
YP_004333021.1	KEGG: bpy:Bphyt_4247 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004333022.1	KEGG: cwo:Cwoe_1524 ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Tetratricopeptide repeat
YP_004333023.1	KEGG: cai:Caci_1104 aldo/keto reductase
YP_004333024.1	KEGG: msm:MSMEG_2125 glycerol operon regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333025.1	TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; KEGG: gob:Gobs_2347 dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase
YP_004333026.1	KEGG: gob:Gobs_2346 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase
YP_004333027.1	TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; Dihydroxyacetone kinase, subunit phosphotransferase; KEGG: msm:MSMEG_2121 multiphosphoryl transfer protein (MTP); PFAM: PEP-utilising enzyme; Phosphotransferase system, fructose subfamily IIA component; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain
YP_004333028.1	PFAM: NADPH-dependent FMN reductase; KEGG: hla:Hlac_1047 NADPH-dependent FMN reductase
YP_004333029.1	manually curated; PFAM: Flavin reductase-like, FMN-binding; KEGG: gob:Gobs_5034 flavin reductase domain-containing protein FMN-binding protein; SMART: Flavin reductase-like, FMN-binding
YP_004333030.1	KEGG: mjl:Mjls_4075 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain
YP_004333031.1	KEGG: svi:Svir_24480 RNA polymerase sigma factor SigB; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4
YP_004333032.1	PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: nml:Namu_4720 poly-beta-hydroxybutyrate polymerase domain-containing protein
YP_004333033.1	KEGG: nfa:nfa52090  DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004333034.1	TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: amd:AMED_2569 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_004333035.1	PFAM: Methyltransferase small; KEGG: sen:SACE_1788 rRNA/tRNA methylase
YP_004333036.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_3398 extracellular solute-binding protein
YP_004333037.1	KEGG: mau:Micau_1581 HhH-GPD family protein; TIGRFAM: Conserved hypothetical protein CHP03252, HhH-GPD; PFAM: HhH-GPD domain
YP_004333038.1	KEGG: fre:Franean1_3539 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004333039.1	KEGG: amd:AMED_2572 hypothetical protein
YP_004333040.1	KEGG: ami:Amir_1499 indigoidine synthase A family protein; HAMAP: Pseudouridine-5'-phosphate glycosidase; PFAM: Pseudouridine-5'-phosphate glycosidase
YP_004333041.1	KEGG: ami:Amir_1500 hypothetical protein
YP_004333042.1	KEGG: rha:RHA1_ro03776 poly(3-hydroxyalkanoic acid) depolymerase; TIGRFAM: Poly(3-hydroxyalkanoate) depolymerase; PFAM: Alpha/beta hydrolase fold-1
YP_004333043.1	PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; KEGG: rop:ROP_36330 polyhydroxyalkanoate synthase
YP_004333044.1	KEGG: sen:SACE_1795 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal
YP_004333045.1	TIGRFAM: Cysteine desulfurase-related; KEGG: sen:SACE_1797 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004333046.1	KEGG: sen:SACE_1798 hypothetical protein
YP_004333047.1	PFAM: Drug/metabolite transporter; KEGG: svi:Svir_24340 predicted permease, DMT superfamily
YP_004333048.1	KEGG: ami:Amir_1503 monosaccharide-transporting ATPase
YP_004333049.1	PFAM: ABC transporter-like; KEGG: ami:Amir_1504 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004333050.1	PFAM: ABC transporter permease; KEGG: ami:Amir_1505 inner-membrane translocator
YP_004333051.1	KEGG: ami:Amir_1506 ROK family protein; PFAM: ROK
YP_004333053.1	KEGG: kra:Krad_0463 aspartate kinase; TIGRFAM: Aspartate kinase domain; PFAM: Aspartate/glutamate/uridylate kinase
YP_004333054.1	SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Non-ribosomal peptide synthetase C-terminal; Amino acid adenylation; Diaminobutyrate-2-oxoglutarate transaminase; KEGG: aau:AAur_pTC10155  non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Bacterial transferase hexapeptide repeat; Aminotransferase class-III
YP_004333055.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_0252 transcriptional regulator, TetR family
YP_004333056.1	KEGG: rop:ROP_68040 hypothetical protein
YP_004333057.1	KEGG: ami:Amir_1687 hypothetical protein
YP_004333058.1	KEGG: sen:SACE_3314  surface layer protein; TIGRFAM: YVTN beta-propeller repeat; PFAM: Heat shock protein 70
YP_004333059.1	KEGG: fal:FRAAL3267  transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004333060.1	KEGG: sen:SACE_3311 hypothetical protein
YP_004333061.1	PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; KEGG: sen:SACE_3310  signal transduction histidine kinase
YP_004333062.1	PFAM: Acyltransferase 3; KEGG: amd:AMED_6015 acyltransferase
YP_004333063.1	KEGG: gob:Gobs_3633 ANTAR domain-containing protein
YP_004333064.1	manually curated; KEGG: rop:ROP_13020 hypothetical protein
YP_004333065.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rop:ROP_13030  ABC transporter permease
YP_004333066.1	PFAM: ABC transporter-like; KEGG: rer:RER_40110 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004333068.1	KEGG: ach:Achl_3085 hypothetical protein
YP_004333069.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; KEGG: sgr:SGR_3528  methyltransferase; PFAM: Tetrapyrrole methylase
YP_004333070.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; KEGG: sen:SACE_5945 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase
YP_004333071.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; KEGG: sro:Sros_5596 precorrin-6A reductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase
YP_004333072.1	TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; KEGG: sro:Sros_5595 precorrin-3B methylase-like protein; PFAM: Tetrapyrrole methylase
YP_004333073.1	KEGG: nfa:nfa31510 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core
YP_004333074.1	PFAM: Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: amd:AMED_7063 precorrin-3B synthase
YP_004333075.1	TIGRFAM: Cobaltochelatase, CobN subunit; KEGG: req:REQ_23600 cobaltochelatase CobN; PFAM: CobN/magnesium chelatase
YP_004333076.1	KEGG: vei:Veis_4611 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004333077.1	TIGRFAM: D-hydantoinase; KEGG: cti:RALTA_A2550 dihydropyrimidinase; PFAM: Amidohydrolase 1
YP_004333078.1	PFAM: ABC transporter permease; KEGG: nca:Noca_0101 inner-membrane translocator
YP_004333079.1	PFAM: ABC transporter-like; KEGG: nca:Noca_0100 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004333080.1	KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like
YP_004333081.1	KEGG: dsh:Dshi_3048 GntR-family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004333082.1	KEGG: bja:blr3295 phenylhydantoinase; PFAM: Amidohydrolase 1
YP_004333083.1	PFAM: Amidase; KEGG: syg:sync_2679 enantiomer-selective amidase
YP_004333084.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; KEGG: rop:ROP_29700 acetyl-CoA carboxylase biotin carboxylase subunit; SMART: Biotin carboxylase, C-terminal
YP_004333085.1	PFAM: Biotin/lipoyl attachment; KEGG: rop:ROP_29710 acetyl-CoA carboxylase biotin carboxyl carrier protein
YP_004333086.1	KEGG: sti:Sthe_2821 pyruvate carboxylase; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase
YP_004333087.1	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: avi:Avi_7413 ScoB; PFAM: Coenzyme A transferase
YP_004333088.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ami:Amir_6047 major facilitator superfamily MFS_1
YP_004333089.1	PFAM: ABC transporter metal-binding lipoprotein; KEGG: nfa:nfa24340  ABC transporter substrate-binding protein
YP_004333090.1	PFAM: ABC transporter-like; KEGG: bfa:Bfae_31320 ATPase component of Mn/Zn ABC-type transporter; SMART: ATPase, AAA+ type, core
YP_004333091.1	PFAM: ABC-3; KEGG: rha:RHA1_ro07269 zinc ABC transporter permease
YP_004333092.1	KEGG: srt:Srot_1549 DtxR family iron (metal) dependent repressor; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor, diptheria toxin type; HTH transcriptional regulator, Crp; Ferrous iron transporter, FeoA subunit
YP_004333093.1	PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: msm:MSMEG_0159 formate dehydrogenase, gamma subunit
YP_004333094.1	PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: msm:MSMEG_0160 formate dehydrogenase, beta subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004333095.1	TIGRFAM: Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: msm:MSMEG_0161 formate dehydrogenase, alpha subunit; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Molybdopterin oxidoreductase, Fe4S4 domain
YP_004333096.1	KEGG: msm:MSMEG_0162 NAD-dependent formate dehydrogenase delta subunit
YP_004333097.1	KEGG: scb:SCAB_84441 MarR family regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333098.1	KEGG: sma:SAV_1189 regulatory protein
YP_004333099.1	KEGG: gob:Gobs_2160 hypothetical protein
YP_004333100.1	PFAM: AmiS/UreI transporter; KEGG: gob:Gobs_2159 AmiS/UreI transporter
YP_004333101.1	KEGG: rha:RHA1_ro02124 formamidase; PFAM: Acetamidase/Formamidase
YP_004333103.1	KEGG: amd:AMED_2601 RNA polymerase primary sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4
YP_004333104.1	KEGG: amd:AMED_2603 myo-inositol-1(or 4)-monophosphatase; PFAM: Inositol monophosphatase
YP_004333105.1	KEGG: nfa:nfa37560 hypothetical protein
YP_004333106.1	PFAM: Aminoglycoside phosphotransferase; KEGG: gob:Gobs_1868 aminoglycoside phosphotransferase
YP_004333107.1	KEGG: rop:ROP_68120 hypothetical protein
YP_004333108.1	KEGG: sen:SACE_1806 hypothetical protein
YP_004333109.1	PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase; HAMAP: DeoxyUTP pyrophosphatase; KEGG: ami:Amir_1515 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
YP_004333110.1	KEGG: mmu:12842 collagen, type I, alpha 1
YP_004333111.1	KEGG: svi:Svir_24240 hypothetical protein
YP_004333112.1	PFAM: Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: amd:AMED_2610 hypothetical protein
YP_004333113.1	KEGG: sen:SACE_1810 integral membrane alanine and leucine rich protein
YP_004333114.1	PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: sen:SACE_1811 trk system potassium uptake protein
YP_004333115.1	PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: ami:Amir_1521 TrkA-N domain protein
YP_004333116.1	KEGG: ami:Amir_1522 hypothetical protein
YP_004333117.1	PFAM: Deoxyribonuclease/rho motif-related TRAM; KEGG: amd:AMED_2615 23S rRNA methyltransferase
YP_004333118.1	KEGG: tcu:Tcur_4636 hypothetical protein
YP_004333119.1	KEGG: fra:Francci3_0217 RNA binding S1; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1
YP_004333120.1	KEGG: ami:Amir_2267 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004333121.1	PFAM: YkuD domain; KEGG: sen:SACE_4786  secreted protein
YP_004333122.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rha:RHA1_ro03382 MFS superfamily tartrate symporter
YP_004333123.1	PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: sen:SACE_1280 dihydroxy-acid dehydratase
YP_004333125.1	KEGG: rer:RER_32310 hypothetical protein
YP_004333126.1	KEGG: kfl:Kfla_6569 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004333127.1	KEGG: kfl:Kfla_6568 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); PFAM: Dehydrogenase, E1 component
YP_004333128.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: kfl:Kfla_6567 transketolase central region; SMART: Transketolase-like, pyrimidine-binding domain
YP_004333129.1	KEGG: kfl:Kfla_6566 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004333130.1	PFAM: Transposase, IS4-like; KEGG: sen:SACE_4676 IS402-like transposase
YP_004333132.1	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: sen:SACE_4525 cytosine/purines/uracil/thiamine/allantoin family permease
YP_004333133.1	KEGG: sro:Sros_5269 N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase, C-terminal; Amidohydrolase 1
YP_004333134.1	KEGG: sen:SACE_4530 hypothetical protein
YP_004333135.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: gmc:GY4MC1_3873 hydantoinase/oxoprolinase
YP_004333136.1	PFAM: Protein of unknown function DUF917; KEGG: drm:Dred_1546 hypothetical protein
YP_004333137.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: gmc:GY4MC1_1588 4-hydroxyphenylacetate 3-hydroxylase
YP_004333138.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: art:Arth_3928 reduced coenzyme F420:NADP oxidoreductase
YP_004333139.1	KEGG: cwo:Cwoe_3996 transcriptional activator domain protein
YP_004333140.1	PFAM: Transposase, IS4-like; KEGG: sen:SACE_4676 IS402-like transposase
YP_004333141.1	PFAM: Bacterial transcriptional activator domain; KEGG: ach:Achl_4571 transcriptional activator domain protein
YP_004333142.1	KEGG: rxy:Rxyl_1858 GntR family transcriptional regulator; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004333143.1	KEGG: rer:RER_54230 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal
YP_004333144.1	SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rop:ROP_20860 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal
YP_004333145.1	KEGG: rer:RER_54210 muconolactone isomerase; PFAM: Muconolactone delta-isomerase
YP_004333146.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nca:Noca_2053 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004333147.1	PFAM: Phospholipase/carboxylesterase; KEGG: nca:Noca_2054 phospholipase/carboxylesterase
YP_004333148.1	TIGRFAM: Cytidyltransferase-related; KEGG: sgr:SGR_1806 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase
YP_004333149.1	KEGG: rha:RHA1_ro00594 cystathionine beta-synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004333150.1	PFAM: Methyltransferase type 11; KEGG: mgi:Mflv_3090 methyltransferase type 11
YP_004333151.1	PFAM: Acetamidase/Formamidase; KEGG: fri:FraEuI1c_0390 acetamidase/formamidase
YP_004333152.1	KEGG: msm:MSMEG_4382 dehydrogenase/reductase SDR family protein member 10; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333153.1	KEGG: kfl:Kfla_5266 epoxide hydrolase domain protein; PFAM: Epoxide hydrolase, N-terminal; Alpha/beta hydrolase fold-1
YP_004333154.1	KEGG: mil:ML5_5425 periplasmic binding protein
YP_004333155.1	KEGG: mjl:Mjls_1270  ammonia monooxygenase; TIGRFAM: AbrB duplication, membrane protein; PFAM:  ammonia monooxygenase
YP_004333156.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: rha:RHA1_ro05645 bifunctional ABC lipid A transporter: ATP-binding/permease; SMART: ATPase, AAA+ type, core
YP_004333157.1	KEGG: nfa:nfa6330 hypothetical protein
YP_004333158.1	KEGG: sen:SACE_5554 hypothetical protein
YP_004333159.1	KEGG: amd:AMED_3008 hypothetical protein
YP_004333160.1	PFAM: Maritimacin/linocin-M18 bacteriocin protein; KEGG: amd:AMED_6577 linocin_M18 bacteriocin protein
YP_004333161.1	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: amd:AMED_6576 hypothetical protein
YP_004333162.1	PFAM: Domain of unknown function DUF1990; KEGG: svi:Svir_21430 hypothetical protein
YP_004333163.1	KEGG: svi:Svir_21420 hypothetical protein
YP_004333164.1	KEGG: sen:SACE_4249 hypothetical protein
YP_004333165.1	KEGG: rop:ROP_53610 hypothetical protein
YP_004333166.1	KEGG: nda:Ndas_3288 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP
YP_004333167.1	KEGG: aau:AAur_3016 Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, YjcE-like, bacteria; PFAM: Cation/H+ exchanger
YP_004333168.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa34110  short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004333169.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_5753 hypothetical protein
YP_004333170.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; KEGG: tfu:Tfu_0635 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like
YP_004333171.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; KEGG: tfu:Tfu_0636 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain
YP_004333172.1	KEGG: tfu:Tfu_0637 cytochrome bd ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II
YP_004333173.1	PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: tfu:Tfu_0638 cytochrome oxidase subunit I
YP_004333174.1	KEGG: ami:Amir_6419 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic
YP_004333175.1	TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: amd:AMED_0914 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding
YP_004333176.1	TIGRFAM: ArgK protein; PFAM: ArgK protein; KEGG: nda:Ndas_5546 LAO/AO transport system ATPase; SMART: ATPase, AAA+ type, core
YP_004333177.1	PFAM: Ribonuclease BN-related; KEGG: gob:Gobs_1038 ribonuclease BN
YP_004333178.1	PFAM: Aldehyde-lyase domain; KEGG: sen:SACE_0699 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
YP_004333179.1	PFAM: Protein of unknown function DUF457, transmembrane; KEGG: sen:SACE_6637 membrane-bound metal-dependent hydrolase
YP_004333180.1	PFAM: Phosphogluconate dehydrogenase, NAD-binding, , C-terminal; KEGG: fra:Francci3_1825 hypothetical protein
YP_004333182.1	KEGG: mjl:Mjls_5013 cytochrome P450
YP_004333183.1	PFAM: Domain of unknown function DUF1254; Domain of unknown function DUF1214; KEGG: cyn:Cyan7425_2480 protein of unknown function DUF1254
YP_004333184.1	TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: mav:MAV_0227 hypothetical protein
YP_004333185.1	KEGG: scb:SCAB_1521 hydrolase
YP_004333186.1	TIGRFAM: F420-dependent oxidoreductase, MSMEG2906; KEGG: svi:Svir_27940 flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase
YP_004333187.1	PFAM: Protein of unknown function DUF742; KEGG: sen:SACE_0559 hypothetical protein
YP_004333188.1	KEGG: mrd:Mrad2831_2474 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004333189.1	manually curated; KEGG: amd:AMED_8046 ArsR family transcriptional regulator
YP_004333190.1	KEGG: gob:Gobs_3724 hypothetical protein
YP_004333192.1	KEGG: mil:ML5_2272 dead/deah box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004333193.1	PFAM: Signal transduction histidine kinase, internal region; DNA ligase, ATP-dependent, central; KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein
YP_004333194.1	KEGG: tbi:Tbis_2886 beta-phosphoglucomutase hydrolase; TIGRFAM: Beta-phosphoglucomutase hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004333195.1	KEGG: tcu:Tcur_2817 glycoside hydrolase 65 central catalytic; PFAM: Glycoside hydrolase, family 65, central catalytic; Glycoside hydrolase, family 65, N-terminal; Glycoside hydrolase, family 65, C-terminal
YP_004333196.1	KEGG: sen:SACE_5686 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4
YP_004333197.1	PFAM: DNA helicase, UvrD/REP type; KEGG: ami:Amir_1311 superfamily I DNA and RNA helicase-like protein
YP_004333198.1	PFAM: Peptidase C26; KEGG: mbt:JTY_2876  amidotransferase
YP_004333199.1	TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: sen:SACE_3331 ATP-dependent DNA helicase; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain
YP_004333200.1	KEGG: amd:AMED_3381 flavin-dependent oxidoreductase; TIGRFAM: Glucose-6-phosphate dehydrogenase, F420-dependent; Glucose-6-phosphate dehydrogenase-related, F420-dependent; PFAM: Luciferase-like, subgroup
YP_004333201.1	PFAM: ATPase-like, ATP-binding domain; KEGG: ami:Amir_3736  PAS/PAC sensor protein
YP_004333203.1	PFAM: Bacterial transcriptional activator domain; KEGG: cwo:Cwoe_4971 transcriptional regulator, SARP family
YP_004333204.1	PFAM: ATPase-like, ATP-binding domain; KEGG: sen:SACE_4200 regulator of sigma factor
YP_004333205.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: scb:SCAB_63591 hypothetical protein
YP_004333206.1	KEGG: tcu:Tcur_0107 thiamine pyrophosphate protein domain-containing protein TPP-binding protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
YP_004333207.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: amd:AMED_5928 OsmC family protein
YP_004333208.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ami:Amir_5358 CDP-alcohol phosphatidyltransferase
YP_004333209.1	KEGG: ami:Amir_5356 FHA domain containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain
YP_004333210.1	PFAM: Domain of unknown function DUF151; KEGG: sen:SACE_3844 hypothetical protein
YP_004333211.1	KEGG: req:REQ_24440 MerR family transcriptional regulator; manually curated; SMART: HTH transcriptional regulator, MerR
YP_004333212.1	TIGRFAM: Glycine cleavage system P protein, homodimeric; HAMAP: Glycine cleavage system P protein, homodimeric; KEGG: ami:Amir_5352 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; Aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_004333213.1	KEGG: amd:AMED_4975 hypothetical protein
YP_004333215.1	KEGG: amd:AMED_4974 CBS domain-containing protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004333216.1	PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: ami:Amir_5344 protein of unknown function DUF21
YP_004333217.1	KEGG: amd:AMED_1128 hypothetical protein
YP_004333218.1	TIGRFAM: Bacterial pantothenate kinase; HAMAP: Bacterial pantothenate kinase; KEGG: kfl:Kfla_6049 pantothenate kinase
YP_004333219.1	KEGG: cai:Caci_2307 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333220.1	PFAM: Protein of unknown function DUF427; KEGG: sna:Snas_3697 hypothetical protein
YP_004333221.1	KEGG: svi:Svir_32540 protein kinase protein; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004333222.1	PFAM: Protein of unknown function DUF81; KEGG: nml:Namu_3379 hypothetical protein
YP_004333223.1	KEGG: amd:AMED_0183 hypothetical protein
YP_004333224.1	KEGG: gob:Gobs_3816 hypothetical protein
YP_004333225.1	PFAM: Helix-turn-helix, HxlR type; KEGG: rha:RHA1_ro02869 ArsR family transcriptional regulator
YP_004333226.1	PFAM: Nitroreductase-like; KEGG: rop:ROP_36530 hypothetical protein
YP_004333227.1	PFAM: Methyltransferase type 11; KEGG: scb:SCAB_7431 hypothetical protein
YP_004333228.1	KEGG: sma:SAV_2438 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004333229.1	KEGG: sco:SCO5824 two-component sensor; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004333230.1	KEGG: amd:AMED_4550 hypothetical protein
YP_004333232.1	PFAM: UspA; KEGG: mil:ML5_5167 UspA domain-containing protein
YP_004333233.1	TIGRFAM: Allophanate hydrolase; KEGG: sma:SAV_6697 allophanate hydrolase; PFAM: Amidase
YP_004333234.1	KEGG: ccs:CCNA_02697 hypothetical protein
YP_004333235.1	PFAM: Isochorismatase-like; KEGG: cai:Caci_6450 isochorismatase hydrolase
YP_004333236.1	KEGG: fal:FRAAL6172 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004333237.1	TIGRFAM: Amidohydrolase ring-opening, AtzD/TrzD; KEGG: azc:AZC_3892 cyanuric acid amidohydrolase; PFAM: Amidohydrolase ring-opening, AtzD/TrzD
YP_004333238.1	KEGG: ske:Sked_01070 monosaccharide-binding protein
YP_004333239.1	PFAM: ABC transporter permease; KEGG: rhi:NGR_c06530 hypothetical ABC transporter permease
YP_004333240.1	PFAM: ABC transporter-like; KEGG: req:REQ_19950 abc transporter atpase suunit; SMART: ATPase, AAA+ type, core
YP_004333241.1	KEGG: mpo:Mpop_4351 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase
YP_004333242.1	PFAM: Cupin 2, conserved barrel; KEGG: acr:Acry_0320 cupin 2 domain-containing protein
YP_004333243.1	PFAM: FAD dependent oxidoreductase; KEGG: bja:bll6080 hypothetical protein
YP_004333244.1	KEGG: fre:Franean1_5399 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like
YP_004333247.1	PFAM: Protein of unknown function DUF2249; KEGG: msv:Mesil_0266 protein of unknown function DUF2249
YP_004333248.1	PFAM: 4Fe-4S binding domain; KEGG: rop:ROP_00820 7Fe ferredoxin
YP_004333249.1	KEGG: rha:RHA1_ro08261 MarR family transcriptional regulator
YP_004333250.1	KEGG: sna:Snas_5097 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR
YP_004333251.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: rop:ROP_48590 hypothetical protein
YP_004333252.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_4451 binding-protein-dependent transport systems inner membrane component
YP_004333253.1	PFAM: ABC transporter-like; KEGG: fre:Franean1_4452 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004333254.1	KEGG: rce:RC1_3257 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase III
YP_004333255.1	KEGG: axy:AXYL_05906 CoA-transferase III family protein 46; PFAM: CoA-transferase III
YP_004333256.1	KEGG: chy:CHY_1745 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333257.1	KEGG: rer:RER_07930 hypothetical protein
YP_004333258.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rer:RER_07920 hypothetical protein
YP_004333259.1	KEGG: mav:MAV_4237 YfdE protein; PFAM: CoA-transferase III
YP_004333260.1	PFAM: Crotonase, core; KEGG: fal:FRAAL3799 enoyl-CoA hydratase
YP_004333261.1	KEGG: saq:Sare_0388 NmrA family protein
YP_004333262.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mxa:MXAN_2145 TetR family transcriptional regulator
YP_004333263.1	PFAM: Luciferase-like, subgroup; KEGG: pla:Plav_0210 luciferase protein
YP_004333264.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: fri:FraEuI1c_5766 SMP-30/gluconolaconase/LRE-like region-containing protein
YP_004333265.1	PFAM: Luciferase-like, subgroup; KEGG: msm:MSMEG_5626 luciferase
YP_004333266.1	KEGG: bpm:BURPS1710b_A1438 hypothetical protein
YP_004333267.1	PFAM: Carboxylesterase, type B; KEGG: sro:Sros_0321 carboxylesterase
YP_004333268.1	KEGG: hne:HNE_1286 cyclododecanone monooxygenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004333269.1	PFAM: Amidohydrolase 2; KEGG: fri:FraEuI1c_1886 amidohydrolase 2
YP_004333270.1	KEGG: nml:Namu_5169 alpha/beta hydrolase fold-3 domain-containing protein
YP_004333271.1	KEGG: mav:MAV_3101 oxidoreductase, short chain dehydrogenase/reductase protein; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333272.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sro:Sros_5274 hypothetical protein
YP_004333273.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rop:ROP_13230  TetR family transcriptional regulator
YP_004333274.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rmr:Rmar_2200 transcriptional regulator, TetR family
YP_004333275.1	KEGG: cwo:Cwoe_2765 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004333276.1	KEGG: mav:MAV_5241 monooxygenase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
YP_004333277.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004333279.1	KEGG: swi:Swit_3075 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004333280.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: reu:Reut_C6222 hydantoinase B/oxoprolinase
YP_004333281.1	KEGG: amt:Amet_1190 hypothetical protein
YP_004333282.1	KEGG: cwo:Cwoe_4447 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004333283.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: msm:MSMEG_5845  C4-dicarboxylate transporter
YP_004333284.1	KEGG: rer:RER_59200 nitrile hydratase regulator 2; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004333285.1	PFAM: Extracellular ligand-binding receptor; KEGG: aau:AAur_pTC20138  branched-chain amino acid ABC transporter
YP_004333286.1	PFAM: Amidase; KEGG: rha:RHA1_ro00359 amidase
YP_004333287.1	KEGG: aau:AAur_pTC20147 cobalt-containing nitrile hydratase beta subunit
YP_004333288.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: aau:AAur_pTC20146 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004333289.1	KEGG: aau:AAur_pTC20145 nitrile hydratase b-subunit
YP_004333290.1	KEGG: tcu:Tcur_0744 ATPase-like protein
YP_004333291.1	PFAM: Methyltransferase type 12; KEGG: htu:Htur_1034 methyltransferase type 12
YP_004333293.1	PFAM: Amidase; KEGG: dbr:Deba_2444 amidase
YP_004333294.1	KEGG: cai:Caci_3872 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004333295.1	PFAM: Integrase, catalytic core; KEGG: cai:Caci_3873 integrase catalytic region
YP_004333296.1	PFAM: Monooxygenase, FAD-binding; KEGG: sna:Snas_4581 monooxygenase FAD-binding protein
YP_004333297.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: fri:FraEuI1c_3813 transcriptional regulator, PadR-like family
YP_004333298.1	KEGG: ami:Amir_1576 hypothetical protein
YP_004333299.1	KEGG: vcn:VOLCADRAFT_89522 hypothetical protein
YP_004333300.1	KEGG: ade:Adeh_1681 PE-PGRS family protein
YP_004333301.1	KEGG: nml:Namu_3635 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333303.1	KEGG: nml:Namu_3637 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_004333304.1	PFAM: Protein of unknown function DUF488; KEGG: nfa:nfa31460 hypothetical protein
YP_004333305.1	KEGG: sro:Sros_7232 hypothetical protein
YP_004333306.1	KEGG: amd:AMED_4650 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004333308.1	PFAM: Cytochrome P450; KEGG: bbt:BBta_0729  cytochrome P450
YP_004333309.1	PFAM: ABC transporter-like; KEGG: req:REQ_24000 excinuclease abc subunit a UvrA1
YP_004333310.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rer:RER_49610 hypothetical protein
YP_004333311.1	KEGG: nfa:nfa43930  transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004333312.1	KEGG: amd:AMED_5874 hypothetical protein
YP_004333313.1	KEGG: mjl:Mjls_2787 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein
YP_004333314.1	PFAM: BFD-like [2Fe-2S]-binding domain; KEGG: sna:Snas_5033 BFD domain-containing protein (2Fe-2S)-binding domain-containing protein
YP_004333315.1	KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central
YP_004333316.1	PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: ami:Amir_3412 glycerophosphoryl diester phosphodiesterase
YP_004333317.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nml:Namu_0574 major facilitator superfamily protein
YP_004333318.1	KEGG: sen:SACE_2290 hypothetical protein
YP_004333319.1	KEGG: svi:Svir_21780 glycosyl transferase; PFAM: Glycosyl transferase, family 2
YP_004333320.1	TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: nfa:nfa31180  polyprenol phosphate mannosyl transferase 2; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004333321.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: req:REQ_37880 gpi deacetylase
YP_004333322.1	PFAM: Amidohydrolase 3; KEGG: svi:Svir_21800 predicted TIM-barrel fold metal-dependent hydrolase
YP_004333323.1	PFAM: Phage shock domain; KEGG: ami:Amir_3401 phage shock protein C, PspC
YP_004333324.1	KEGG: ami:Amir_2701 hypothetical protein
YP_004333325.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: amd:AMED_4873 X-Pro dipeptidase
YP_004333326.1	KEGG: ami:Amir_2257 5'-3' exonuclease; PFAM: 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2
YP_004333327.1	KEGG: clu:CLUG_01018 hypothetical protein
YP_004333328.1	KEGG: sen:SACE_2265  ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DSH, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004333329.1	KEGG: req:REQ_23350 twin-arginine translocation protein TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase
YP_004333330.1	TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: sen:SACE_2262 hypothetical protein; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_004333332.1	KEGG: ami:Amir_2250  transcriptional regulator protein
YP_004333333.1	KEGG: ami:Amir_2249  transcriptional regulator protein
YP_004333334.1	KEGG: amd:AMED_4323 hypothetical protein
YP_004333335.1	PFAM: Protein of unknown function DUF1304; KEGG: ami:Amir_1705 protein of unknown function DUF1304
YP_004333336.1	KEGG: ami:Amir_2247 protein of unknown function DUF245 domain protein; TIGRFAM: Pup ligase; PFAM: Pup ligase/deamidase
YP_004333337.1	KEGG: sen:SACE_2253  glycerophosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; Diacylglycerol kinase, catalytic domain; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; Diacylglycerol kinase, catalytic domain
YP_004333338.1	KEGG: bcv:Bcav_2092 hypothetical protein
YP_004333339.1	KEGG: nda:Ndas_4113 molybdopterin oxidoreductase Fe4s4 region; PFAM: Molybdopterin oxidoreductase, Fe4S4 domain; Ferredoxin; 4Fe-4S binding domain; SMART: Molybdopterin oxidoreductase, Fe4S4 domain
YP_004333340.1	KEGG: scb:SCAB_16891 respiratory chain oxidoreductase; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004333341.1	manually curated; KEGG: sma:SAV_1834 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit); PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain
YP_004333342.1	KEGG: fri:FraEuI1c_5975 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
YP_004333343.1	TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Formate dehydrogenase, subunit FdhD; KEGG: amd:AMED_6733 FdhD protein; PFAM: Formate dehydrogenase, subunit FdhD
YP_004333344.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sro:Sros_0848 hypothetical protein
YP_004333345.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_0780 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004333346.1	KEGG: req:REQ_23290 20S proteasome alpha subunit prca; TIGRFAM: Proteasome, alpha subunit; PFAM: Proteasome, subunit alpha/beta
YP_004333347.1	KEGG: ami:Amir_2241 20S proteasome A and B subunits; TIGRFAM: Peptidase T1A, proteasome beta-subunit, actinobacteria; PFAM: Proteasome, subunit alpha/beta
YP_004333348.1	TIGRFAM: Ubiquitin-like, Pup; HAMAP: Ubiquitin-like, Pup; KEGG: mmi:MMAR_3086 hypothetical protein; PFAM: Ubiquitin-like, Pup
YP_004333349.1	KEGG: ami:Amir_2239 protein of unknown function DUF245 domain protein; TIGRFAM: Pup deamidase; PFAM: Pup ligase/deamidase
YP_004333350.1	PFAM: NUDIX hydrolase domain; KEGG: req:REQ_23220 NUDIX superfamily hydrolase
YP_004333351.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: kfl:Kfla_3571 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004333352.1	KEGG: kra:Krad_2941 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333353.1	KEGG: gob:Gobs_1264 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like
YP_004333354.1	KEGG: mbt:JTY_1080  oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004333355.1	KEGG: mab:MAB_0479  regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333356.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: amd:AMED_1482  transposase
YP_004333357.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: msm:MSMEG_5911 AraC family protein transcriptional regulator
YP_004333358.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL5706 quinone binding protein
YP_004333359.1	KEGG: fri:FraEuI1c_4888 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; ATPase, AAA+ type, core
YP_004333360.1	KEGG: nml:Namu_0325 hypothetical protein
YP_004333361.1	KEGG: sro:Sros_0172 hypothetical protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like
YP_004333362.1	TIGRFAM: Proteasome ATPase; PFAM: ATPase, AAA-type, core; KEGG: svi:Svir_22080 ATP-dependent 26S proteasome regulatory subunit; SMART: ATPase, AAA+ type, core
YP_004333363.1	KEGG: svi:Svir_22120 tRNA (adenine-58-N(1)-) methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit
YP_004333364.1	KEGG: sen:SACE_2242 RecB family exonuclease
YP_004333365.1	KEGG: amd:AMED_4912 hypothetical protein
YP_004333366.1	PFAM: ATP phosphoribosyltransferase, catalytic domain; Histidine biosynthesis HisG, C-terminal; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; Histidine biosynthesis HisG, C-terminal; HAMAP: Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; KEGG: mav:MAV_2393 ATP phosphoribosyltransferase
YP_004333367.1	KEGG: nml:Namu_2980 phosphoribosyl-ATP diphosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like
YP_004333368.1	KEGG: ami:Amir_2212 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004333369.1	TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: ami:Amir_2211 methionine synthase; PFAM: Homocysteine S-methyltransferase; Pterin-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain
YP_004333370.1	KEGG: ami:Amir_2210 protein of unknown function DUF75
YP_004333371.1	KEGG: rer:RER_31910 MFS transporter; manually curated; PFAM: Major facilitator superfamily MFS-1
YP_004333372.1	PFAM: Protein of unknown function DUF2237; KEGG: mep:MPQ_0170 hypothetical protein
YP_004333373.1	TIGRFAM: Mycothiol biosynthesis protein, MshC; KEGG: amd:AMED_4930 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia
YP_004333375.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sna:Snas_1047 major facilitator superfamily MFS_1
YP_004333376.1	KEGG: tbi:Tbis_0296 NLP/P60 protein
YP_004333377.1	KEGG: nml:Namu_0550 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004333378.1	KEGG: nml:Namu_0551 Mg-chelatase subunit ChlI-like protein
YP_004333379.1	PFAM: Protein of unknown function DUF664; KEGG: nfa:nfa32260 hypothetical protein
YP_004333380.1	PFAM: Peptidase M48; KEGG: gob:Gobs_3608 peptidase M48 Ste24p
YP_004333381.1	KEGG: sna:Snas_4544 transcriptional repressor, CopY family; manually curated; PFAM: Penicillinase repressor
YP_004333382.1	PFAM: YkuD domain; KEGG: amd:AMED_4234  secreted protein
YP_004333383.1	KEGG: gob:Gobs_1801 EmrB/QacA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004333384.1	TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, MSMEG4141, predicted; KEGG: rha:RHA1_ro02439 hypothetical protein
YP_004333385.1	PFAM: Amine oxidase; KEGG: mil:ML5_2707 amine oxidase
YP_004333386.1	KEGG: tbi:Tbis_2237 DNA-directed DNA polymerase; PFAM: DNA-directed DNA polymerase, family A, palm domain; SMART: DNA-directed DNA polymerase, family A, palm domain
YP_004333387.1	PFAM: Lipase, GDSL; KEGG: mau:Micau_2607 hypothetical protein
YP_004333388.1	TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; HAMAP: S-adenosylmethionine decarboxylase proenzyme; KEGG: nfa:nfa37860  S-adenosylmethionine decarboxylase; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; Spermine synthase
YP_004333389.1	KEGG: ami:Amir_5654 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal
YP_004333390.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: fri:FraEuI1c_2912 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
YP_004333391.1	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pla:Plav_0925 acyl-CoA dehydrogenase domain-containing protein
YP_004333392.1	PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: msp:Mspyr1_45870 acyl-CoA dehydrogenase
YP_004333393.1	KEGG: svi:Svir_30180 succinate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004333394.1	PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; KEGG: sen:SACE_3840 cobalamin (vitamin B12) biosynthesis CbiM protein
YP_004333395.1	KEGG: msm:MSMEG_2608 cobalt transport protein CbiM
YP_004333396.1	KEGG: sen:SACE_3838 cobalt ABC transporter permease; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein
YP_004333397.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Cobalt transport protein ATP-binding subunit; KEGG: sen:SACE_3837 cobalt ABC transporter ATP binding protein; PFAM: ABC transporter-like
YP_004333398.1	KEGG: amd:AMED_4669 band 7 domain-containing protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_004333399.1	PFAM: Nodulation efficiency, NfeD; KEGG: sen:SACE_3782 membrane protein implicated in regulation of membrane protease activity
YP_004333400.1	KEGG: sen:SACE_3783 hypothetical protein
YP_004333401.1	KEGG: svi:Svir_22310 hypothetical protein
YP_004333402.1	KEGG: tbi:Tbis_2516 transcriptional regulator CdaR; PFAM: GAF; SMART: GAF
YP_004333403.1	PFAM: Luciferase-like, subgroup; KEGG: pla:Plav_1793 alkanal monooxygenase
YP_004333404.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: gbr:Gbro_1699 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004333405.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: tbi:Tbis_2523 alpha/beta hydrolase fold protein
YP_004333406.1	KEGG: tbi:Tbis_2515 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004333407.1	PFAM: Luciferase-like, subgroup; KEGG: tbi:Tbis_2521 luciferase-like monooxygenase
YP_004333408.1	PFAM: Aminoglycoside phosphotransferase; KEGG: tbi:Tbis_2519 aminoglycoside phosphotransferase
YP_004333409.1	KEGG: tbi:Tbis_2518 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004333410.1	KEGG: kfl:Kfla_3382 response regulator receiver
YP_004333411.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: kfl:Kfla_3384 integrase protein
YP_004333412.1	PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: ami:Amir_2182 ferrochelatase
YP_004333413.1	KEGG: sen:SACE_3786 enoyl-(acyl carrier protein) reductase
YP_004333414.1	SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: gob:Gobs_2104 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333415.1	KEGG: rer:RER_30730 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004333416.1	PFAM: Domain of unknown function DUF58; KEGG: ami:Amir_2146 protein of unknown function DUF58
YP_004333417.1	PFAM: ATPase, AAA-3; KEGG: amd:AMED_4951 MoxR-like ATPase
YP_004333418.1	PFAM: NLP/P60; KEGG: amd:AMED_4954 hypothetical protein
YP_004333419.1	KEGG: nml:Namu_2294 hypothetical protein
YP_004333420.1	TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: amd:AMED_4955 aconitate hydratase 1; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_004333421.1	PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; TIGRFAM: Glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: rop:ROP_26550 glycine cleavage system aminomethyltransferase T
YP_004333422.1	PFAM: Cupin 2, conserved barrel; KEGG: ret:RHE_CH03368 hypothetical protein
YP_004333423.1	KEGG: nfa:nfa48840 hypothetical protein; TIGRFAM: Methyltransferase-like; PFAM: Protein of unknown function DUF2260
YP_004333424.1	TIGRFAM: Conserved hypothetical protein CHP03442; KEGG: mil:ML5_4985 hypothetical protein
YP_004333425.1	KEGG: ami:Amir_2123 protein of unknown function DUF323; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor
YP_004333426.1	manually curated; TIGRFAM: Glutamate--cysteine ligase, GsaH-related; KEGG: sen:SACE_3826 glutamate-cysteine ligase; PFAM: Glutamate--cysteine ligase, GCS2
YP_004333427.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_2120 transcriptional regulator, TetR family
YP_004333428.1	KEGG: kfl:Kfla_0168 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004333429.1	PFAM: Crotonase, core; KEGG: ami:Amir_5132 enoyl-CoA hydratase/isomerase
YP_004333430.1	KEGG: ami:Amir_5133 transcriptional regulator
YP_004333431.1	KEGG: sen:SACE_2187 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004333432.1	KEGG: nfa:nfa34890 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333433.1	PFAM: UspA; KEGG: amd:AMED_1572 universal stress protein
YP_004333434.1	PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: kfl:Kfla_0317 adenylate/guanylate cyclase; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004333435.1	PFAM: Domain of unknown function DUF59; KEGG: ami:Amir_5148 protein of unknown function DUF59
YP_004333436.1	KEGG: ami:Amir_5149 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal
YP_004333437.1	TIGRFAM: Cysteine desulfurase, SufS; KEGG: svi:Svir_16160 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004333438.1	TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: amd:AMED_2832 Fe-S cluster assembly ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004333439.1	KEGG: sen:SACE_2175 FeS assembly protein; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD
YP_004333440.1	KEGG: ami:Amir_5154 FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD
YP_004333441.1	PFAM: HTH transcriptional regulator, ArsR; KEGG: sen:SACE_2173 transcriptional regulator
YP_004333442.1	KEGG: rop:ROP_69820 mannosyltransferase MptB
YP_004333443.1	PFAM: ABC transporter-like; KEGG: ami:Amir_5162 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004333444.1	PFAM: ABC-2 type transporter; KEGG: ami:Amir_5163 ABC-2 type transporter
YP_004333445.1	PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: ami:Amir_5168 cytochrome oxidase assembly
YP_004333446.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sen:SACE_2164  quinone oxidoreductase; SMART: Polyketide synthase, enoylreductase
YP_004333447.1	TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: svi:Svir_15990 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase
YP_004333448.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: ami:Amir_5186 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_004333449.1	TIGRFAM: Transaldolase 2; HAMAP: Transaldolase; KEGG: amd:AMED_2808 transaldolase; PFAM: Transaldolase
YP_004333450.1	KEGG: sen:SACE_2158 glucose-6-phosphate isomerase
YP_004333451.1	TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: sen:SACE_2157 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding
YP_004333452.1	KEGG: ami:Amir_5190 OpcA protein; TIGRFAM: OpcA; PFAM: Glucose-6-phosphate dehydrogenase subunit
YP_004333453.1	TIGRFAM: 6-phosphogluconolactonase, DevB-type; KEGG: ami:Amir_5191 6-phosphogluconolactonase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase
YP_004333454.1	KEGG: mau:Micau_2900 hypothetical protein
YP_004333455.1	PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: rha:RHA1_ro02245 phosphoribosylglycinamide formyltransferase 2
YP_004333456.1	KEGG: amd:AMED_1048 hypothetical protein
YP_004333457.1	KEGG: gob:Gobs_2051 electron transport protein
YP_004333458.1	KEGG: rha:RHA1_ro07180 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit
YP_004333459.1	TIGRFAM: Triosephosphate isomerase; KEGG: ami:Amir_5197 triosephosphate isomerase; PFAM: Triosephosphate isomerase
YP_004333460.1	HAMAP: Phosphoglycerate kinase; KEGG: svi:Svir_15880 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004333461.1	SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: sro:Sros_6038 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_004333462.1	TIGRFAM: Sporulation regulator WhiA; HAMAP: Sporulation regulator WhiA; KEGG: svi:Svir_15810 hypothetical protein; PFAM: Sporulation regulator WhiA, C-terminal; Sporulation regulator WhiA, N-terminal
YP_004333463.1	KEGG: sen:SACE_2140 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0052; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052
YP_004333464.1	HAMAP: ATPase, P-loop-containing; KEGG: amd:AMED_2779 P-loop ATPase
YP_004333465.1	SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Excinuclease ABC, C subunit; KEGG: sen:SACE_2138 nuclease subunit of the excinuclease ABC complex; HAMAP: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; Helix-hairpin-helix motif
YP_004333466.1	KEGG: amd:AMED_8273 hypothetical protein
YP_004333467.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nda:Ndas_4869 haloacid dehalogenase domain protein hydrolase
YP_004333468.1	PFAM: Protein of unknown function DUF2581; KEGG: amd:AMED_2775 hypothetical protein
YP_004333469.1	TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: nml:Namu_4150 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_004333470.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; Riboflavin biosynthesis protein RibBA; KEGG: amd:AMED_2773 GTP cyclohydrolase II/3,4-dihydroxy 2-butanone 4-phosphate synthase; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA
YP_004333471.1	TIGRFAM: Lumazine-binding protein; KEGG: sgr:SGR_6090 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein
YP_004333472.1	TIGRFAM: Riboflavin biosynthesis protein RibD; KEGG: svi:Svir_15710 diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding
YP_004333473.1	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: svi:Svir_15700 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase
YP_004333474.1	PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG: sen:SACE_2114 ribosomal RNA small subunit methyltransferase
YP_004333475.1	PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: ami:Amir_5224 methionyl-tRNA formyltransferase
YP_004333476.1	PFAM: Formylmethionine deformylase; TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: ami:Amir_5225 peptide deformylase
YP_004333477.1	KEGG: ami:Amir_5234 primosomal protein N' (replication factor Y) - superfamily II helicase-like protein
YP_004333478.1	KEGG: gob:Gobs_0948 geranylgeranyl reductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD dependent oxidoreductase
YP_004333479.1	KEGG: kfl:Kfla_4685 hypothetical protein
YP_004333480.1	PFAM: Cupin 2, conserved barrel; KEGG: gob:Gobs_3405 cupin 2 conserved barrel domain-containing protein
YP_004333481.1	PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; KEGG: srt:Srot_2293 S-adenosylmethionine synthetase
YP_004333482.1	PFAM: SH3, type 3; KEGG: cin:100181706 similar to HrTT-1-like
YP_004333483.1	PFAM: Protein of unknown function DUF939; KEGG: gob:Gobs_2756 hypothetical protein
YP_004333484.1	KEGG: nca:Noca_4824 hypothetical protein
YP_004333486.1	KEGG: sma:SAV_7236 hypothetical protein
YP_004333487.1	PFAM: Ferritin/Dps protein; KEGG: sna:Snas_3834 ferritin Dps family protein
YP_004333489.1	KEGG: cce:Ccel_0633 hypothetical protein
YP_004333490.1	KEGG: sma:SAV_1892 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004333492.1	PFAM: Protein of unknown function DUF1931; KEGG: nml:Namu_3580 hypothetical protein
YP_004333493.1	KEGG: sro:Sros_4025 hypothetical protein
YP_004333494.1	manually curated; KEGG: fal:FRAAL6446 hypothetical protein
YP_004333495.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Cyclic nucleotide-binding domain; KEGG: sro:Sros_4028 thioredoxin-disulfide reductase; SMART: Cyclic nucleotide-binding domain
YP_004333496.1	KEGG: nca:Noca_2345 hypothetical protein; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related
YP_004333497.1	KEGG: sma:SAV_7227 hypothetical protein
YP_004333498.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; manually curated; KEGG: kra:Krad_3959 formaldehyde dehydrogenase glutathione-independent; TIGRFAM: Formaldehyde dehydrogenase, glutathione-independent
YP_004333499.1	KEGG: ava:Ava_C0139 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_004333500.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, N-terminal; Transketolase, C-terminal; KEGG: fra:Francci3_1278 transketolase; SMART: Transketolase-like, pyrimidine-binding domain
YP_004333502.1	KEGG: gbr:Gbro_2666 IstB domain-containing protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004333503.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: gbr:Gbro_4728 integrase protein
YP_004333504.1	PFAM: Integrase, catalytic core, phage; KEGG: rer:pREL1_0294  transposase
YP_004333505.1	PFAM: Mechanosensitive ion channel MscS; KEGG: mil:ML5_4346 mscs mechanosensitive ion channel
YP_004333507.1	KEGG: svi:Svir_35080 protein of unknown function (DUF461)
YP_004333508.1	KEGG: msm:MSMEG_2280 pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004333509.1	KEGG: nda:Ndas_1248 membrane protein
YP_004333510.1	KEGG: fal:FRAAL6366 hypothetical protein
YP_004333511.1	PFAM: Dienelactone hydrolase; KEGG: sro:Sros_3321 dienelactone hydrolase
YP_004333512.1	PFAM: Erythromycin esterase; Phosphoribosyltransferase; KEGG: mgi:Mflv_4988 erythromycin esterase
YP_004333513.1	KEGG: ami:Amir_5363 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-B/F/G type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4
YP_004333514.1	KEGG: rha:RHA1_ro06703 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004333515.1	TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: sma:SAV_7241 ATP-dependent Clp protease; SMART: ATPase, AAA+ type, core
YP_004333516.1	KEGG: sro:Sros_4025 hypothetical protein
YP_004333517.1	KEGG: fri:FraEuI1c_6448 chaperone DnaJ domain protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004333518.1	KEGG: sma:SAV_7238 GrpE homologue; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor
YP_004333519.1	TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: sma:SAV_7237 molecular chaperone DnaK; PFAM: Heat shock protein 70
YP_004333520.1	KEGG: scb:SCAB_84581 hypothetical protein
YP_004333521.1	PFAM: Heat shock protein Hsp20; KEGG: sna:Snas_3573 heat shock protein HSP20
YP_004333522.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_2116 anti-sigma-factor antagonist
YP_004333523.1	PFAM: Protein of unknown function DUF2267; KEGG: afw:Anae109_3329 hypothetical protein
YP_004333524.1	PFAM: Major facilitator superfamily MFS-1; KEGG: msm:MSMEG_3536 sugar transport protein
YP_004333525.1	PFAM: Transcription factor WhiB; KEGG: cdi:DIP0712  transcriptional regulator
YP_004333526.1	KEGG: bgl:bglu_1g00680 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease
YP_004333528.1	PFAM: Protein of unknown function DUF308, membrane; KEGG: amd:AMED_1470 hypothetical protein
YP_004333529.1	KEGG: fal:FRAAL2608 hypothetical protein
YP_004333530.1	KEGG: ava:Ava_C0139 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria
YP_004333531.1	TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: cwo:Cwoe_1220 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding
YP_004333533.1	KEGG: aae:aq_199 hypothetical protein
YP_004333534.1	manually curated; KEGG: tbi:Tbis_0798 PDZ/DHR/GLGF domain-containing protein
YP_004333535.1	KEGG: sro:Sros_3321 dienelactone hydrolase
YP_004333537.1	KEGG: sma:SAV_7231 intracellular protease/amidase; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI
YP_004333538.1	KEGG: amd:AMED_8764 transcription elongation factor GreA
YP_004333539.1	KEGG: mkm:Mkms_1137 integrase catalytic subunit
YP_004333540.1	KEGG: geo:Geob_0340 hypothetical protein
YP_004333541.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: rha:RHA1_ro08065 AraC family transcriptional regulator
YP_004333542.1	PFAM: Glycosyl transferase, group 1; KEGG: afo:Afer_0361 glycosyl transferase group 1
YP_004333543.1	KEGG: opr:Ocepr_1698 hypothetical protein
YP_004333544.1	TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: ami:Amir_5236 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein
YP_004333545.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: ami:Amir_5237 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase, subunit omega/K/RPABC2
YP_004333546.1	manually curated; KEGG: rer:RER_30080 guanylate kinase; SMART: Guanylate kinase/L-type calcium channel; TIGRFAM: Guanylate kinase, sub-group; PFAM: Guanylate kinase; HAMAP: Guanylate kinase, sub-group
YP_004333547.1	KEGG: ami:Amir_5239 hypothetical protein
YP_004333548.1	KEGG: fre:Franean1_6493 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004333549.1	SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; KEGG: ami:Amir_5240 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain
YP_004333550.1	SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: sen:SACE_2083 carbamoyl-phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain
YP_004333551.1	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: sen:SACE_2082 carbamoyl-phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal
YP_004333552.1	TIGRFAM: Dihydroorotase; KEGG: svi:Svir_15560 dihydroorotase; PFAM: Amidohydrolase 1
YP_004333553.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: sen:SACE_2079 aspartate carbamoyltransferase catalytic chain
YP_004333554.1	HAMAP: Bifunctional protein PyrR; KEGG: rha:RHA1_ro07147 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004333555.1	KEGG: ami:Amir_5247 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004333556.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_7047 major facilitator superfamily sugar transporter
YP_004333557.1	KEGG: nml:Namu_4904 ankyrin
YP_004333558.1	TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: ami:Amir_5248 NusB antitermination factor; PFAM: NusB/RsmB/TIM44
YP_004333559.1	SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: ami:Amir_5249 translation elongation factor P; HAMAP: Translation elongation factor P; PFAM: Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; Elongation factor P, C-terminal
YP_004333560.1	PFAM: Peptidase M24, structural domain; Creatinase; KEGG: ami:Amir_5250 peptidase M24
YP_004333561.1	PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: ami:Amir_5253 3-dehydroquinate synthase
YP_004333562.1	HAMAP: Shikimate kinase; KEGG: amd:AMED_2734 shikimate kinase; PFAM: Shikimate kinase
YP_004333563.1	TIGRFAM: Chorismate synthase; KEGG: mav:MAV_3417 chorismate synthase; PFAM: Chorismate synthase
YP_004333564.1	PFAM: Peptidase A24A, prepilin type IV; KEGG: sro:Sros_6538 prepilin peptidase
YP_004333565.1	KEGG: sma:SAV_1780 hypothetical protein; TIGRFAM: F420-binding domain, PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004333566.1	KEGG: sco:SCO2803 hypothetical protein
YP_004333567.1	KEGG: amd:AMED_2715 aminodeoxychorismate lyase-like protein; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755
YP_004333568.1	SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: ami:Amir_5264 Holliday junction resolvase YqgF; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like
YP_004333569.1	TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; KEGG: sen:SACE_2052 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_004333570.1	KEGG: amd:AMED_2712 hypothetical protein
YP_004333571.1	KEGG: sen:SACE_2050 secreted protein
YP_004333572.1	KEGG: svi:Svir_04710 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004333573.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_1469 regulatory protein TetR
YP_004333574.1	TIGRFAM: Ornithine aminotransferase; KEGG: gob:Gobs_2808 ornithine aminotransferase; PFAM: Aminotransferase class-III
YP_004333575.1	KEGG: sco:SCO1458 transcription regulator AsnC; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004333576.1	HAMAP: Arginine deiminase; KEGG: scb:SCAB_23151 arginine deiminase; PFAM: Amidinotransferase
YP_004333577.1	PFAM: FAD dependent oxidoreductase; KEGG: nml:Namu_2591 hypothetical protein
YP_004333578.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nml:Namu_2592 TetR family transcriptional regulator
YP_004333579.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004333580.1	PFAM: Amidase; KEGG: pla:Plav_3043 amidase
YP_004333581.1	KEGG: rop:ROP_32800 hydantoinase A; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004333582.1	KEGG: rer:RER_58720 hydantoinase B; PFAM: Hydantoinase B/oxoprolinase
YP_004333583.1	KEGG: oih:OB3304 penicillin acylase; PFAM: Peptidase S45, penicillin amidase
YP_004333584.1	KEGG: tbi:Tbis_2612  PucR family transcriptional regulator
YP_004333585.1	KEGG: cai:Caci_5963 carboxymuconolactone decarboxylase
YP_004333586.1	PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fri:FraEuI1c_2884 aromatic-ring-hydroxylating dioxygenase beta subunit
YP_004333587.1	PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: tfu:Tfu_0484 streptogrisin C. Serine peptidase. MEROPS family S01A
YP_004333588.1	KEGG: svi:Svir_15240 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core
YP_004333589.1	KEGG: rop:ROP_63240 aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004333590.1	KEGG: aac:Aaci_2663 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004333591.1	KEGG: bts:Btus_0692 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII
YP_004333593.1	PFAM: Lipase, GDSL; KEGG: sen:SACE_3285 lipolytic enzyme, G-D-S-L
YP_004333594.1	KEGG: sen:SACE_2043 hypothetical protein
YP_004333595.1	TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: sen:SACE_2041 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain
YP_004333596.1	KEGG: amd:AMED_2699 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Hedgehog/intein hint, N-terminal; Hedgehog/intein hint domain, C-terminal
YP_004333597.1	TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; KEGG: kra:Krad_0597 carbohydrate kinase, thermoresistant glucokinase; PFAM: Shikimate kinase
YP_004333598.1	PFAM: YibE/F-like; KEGG: amd:AMED_5281 YibE/F-like protein
YP_004333599.1	PFAM: Methyltransferase type 12; KEGG: msp:Mspyr1_25700 ribosomal protein L11 methylase
YP_004333600.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: nfa:nfa36640 histidyl-tRNA synthetase
YP_004333601.1	KEGG: ami:Amir_1700 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004333602.1	PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: sen:SACE_2030  peptidyl-prolyl cis-trans isomerase
YP_004333603.1	SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: ami:Amir_1698 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT
YP_004333604.1	KEGG: sen:SACE_2027 adenine phosphoribosyltransferase; HAMAP: Adenine phosphoribosyl transferase; PFAM: Phosphoribosyltransferase
YP_004333605.1	KEGG: sen:SACE_2026 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal
YP_004333606.1	KEGG: svi:Svir_15100 protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: SecD/SecF/SecDF export membrane protein, GG motif, N-terminal
YP_004333607.1	KEGG: ami:Amir_1694 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC
YP_004333608.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: amd:AMED_5299 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal
YP_004333609.1	TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Bacterial DNA recombination protein RuvA; KEGG: ami:Amir_1691 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal
YP_004333610.1	PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: svi:Svir_15060 Holliday junction resolvase
YP_004333611.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kse:Ksed_20380 lactoylglutathione lyase-like lyase
YP_004333612.1	KEGG: mil:ML5_4270 hypothetical protein
YP_004333613.1	SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; DNA-directed DNA polymerase, family A, palm domain; TIGRFAM: DNA polymerase 1; KEGG: sen:SACE_5437 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain
YP_004333614.1	PFAM: Bacterial stress protein; KEGG: fre:Franean1_1054 stress protein
YP_004333615.1	PFAM: Tellurium resistance; Bacterial stress protein; KEGG: gbr:Gbro_4753 tellurium resistance
YP_004333616.1	KEGG: tcu:Tcur_3189 hypothetical protein
YP_004333617.1	KEGG: tcu:Tcur_3186 hypothetical protein
YP_004333618.1	PFAM: Heat shock protein DnaJ-like protein DjlA; KEGG: rha:RHA1_ro01775 tellurium resistance protein
YP_004333619.1	PFAM: Protein of unknown function DUF475; Bacterial stress protein; KEGG: ske:Sked_33950 hypothetical protein
YP_004333620.1	KEGG: pop:POPTR_571331 hypothetical protein
YP_004333621.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: stp:Strop_1547 GCN5-related N-acetyltransferase
YP_004333623.1	TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: sma:SAV_6832 hypothetical protein; PFAM: Protein of unknown function DUF28
YP_004333624.1	TIGRFAM: Glutamine amidotransferase subunit PdxT; HAMAP: Glutamine amidotransferase subunit PdxT; KEGG: ami:Amir_2109 SNO glutamine amidotransferase; PFAM: Glutamine amidotransferase subunit PdxT
YP_004333625.1	KEGG: ami:Amir_0465 malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding
YP_004333626.1	TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: amd:AMED_5317 elongation factor EF-G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal
YP_004333627.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: tcu:Tcur_0680 branched-chain amino acid transport
YP_004333628.1	PFAM: Branched-chain amino acid transport, permease; KEGG: sna:Snas_2053 AzlC family protein
YP_004333629.1	KEGG: sen:SACE_2013 DNA-binding protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_004333630.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: tcu:Tcur_4812 Rieske (2Fe-2S) domain-containing protein
YP_004333631.1	TIGRFAM: Vitamin B6 biosynthesis protein; HAMAP: Vitamin B6 biosynthesis protein; KEGG: sna:Snas_2410 pyridoxine biosynthesis protein; PFAM: Vitamin B6 biosynthesis protein
YP_004333632.1	KEGG: ami:Amir_2095 NUDIX hydrolase
YP_004333633.1	KEGG: ami:Amir_2094 phosphatidylinositol alpha-mannosyltransferase; PFAM: Glycosyl transferase, group 1
YP_004333634.1	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: amd:AMED_5323 lipid A biosynthesis lauroyl acyltransferase
YP_004333635.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sen:SACE_2007 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_004333636.1	PFAM: Histidine triad (HIT) protein; KEGG: nfa:nfa37110 hypothetical protein
YP_004333637.1	TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding; KEGG: svi:Svir_14910 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD
YP_004333638.1	KEGG: gga:396544 nascent polypeptide-associated complex alpha subunit
YP_004333639.1	KEGG: fri:FraEuI1c_2570 hypothetical protein
YP_004333640.1	KEGG: fre:Franean1_0008 hypothetical protein
YP_004333641.1	KEGG: ade:Adeh_0244 LigA
YP_004333642.1	PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; KEGG: mva:Mvan_6036 glycosyl transferase protein
YP_004333644.1	KEGG: sco:SCO0723  fructose transport system kinase
YP_004333645.1	KEGG: sco:SCO5944 hypothetical protein
YP_004333646.1	KEGG: art:Arth_2739 MerR family transcriptional regulator; PFAM: TipAS antibiotic-recognition; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004333647.1	TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; PAS fold-4; PAS fold; PAS fold-3; GAF; KEGG: sro:Sros_3356 serine phosphatase RsbU regulator of sigma subunit-like protein; SMART: Protein phosphatase 2C-like; PAS; PAC motif
YP_004333648.1	KEGG: rop:ROP_51030 hypothetical protein
YP_004333649.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: app:CAP2UW1_1059 alpha/beta hydrolase fold protein
YP_004333650.1	KEGG: gob:Gobs_0315 PPOX class F420-dependent enzyme; TIGRFAM: Probable F420-dependent enzyme, PPOX class, family Rv0121; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004333651.1	KEGG: cai:Caci_0619 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004333652.1	PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: mau:Micau_2195 pirin domain-containing protein
YP_004333653.1	KEGG: nda:Ndas_2917 GCN5-related N-acetyltransferase
YP_004333654.1	KEGG: amd:AMED_3525  helicase; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004333655.1	KEGG: mtb:TBMG_01880 hypothetical protein
YP_004333656.1	PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: gob:Gobs_4864 export protein
YP_004333657.1	KEGG: svi:Svir_19090 cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004333658.1	KEGG: cai:Caci_2641 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004333659.1	PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: nfa:nfa31470  GTP cyclohydrolase I
YP_004333660.1	KEGG: nml:Namu_3645  transcriptional regulator
YP_004333661.1	KEGG: sen:SACE_0314 penicillin binding protein (class A); PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_004333662.1	TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: nml:Namu_3893 twin-arginine translocation protein, TatA/E family subunit; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106
YP_004333663.1	KEGG: sen:SACE_0700 short chain dehydrogenase/reductase oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004333664.1	KEGG: mch:Mchl_5398 hypothetical protein
YP_004333665.1	PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; KEGG: tbi:Tbis_2043 shikimate-5-dehydrogenase
YP_004333666.1	PFAM: Methyltransferase type 11; KEGG: gob:Gobs_0254 type 11 methyltransferase
YP_004333667.1	KEGG: cmi:CMM_0491 hypothetical protein
YP_004333668.1	KEGG: amd:AMED_3031 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333669.1	PFAM: ABC transporter-like; KEGG: rop:ROP_48820  ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004333670.1	PFAM: ABC-2 type transporter; KEGG: amd:AMED_3028 ABC-2 type transporter
YP_004333671.1	TIGRFAM: Phosphoglucomutase, alpha-D-glucose specific; KEGG: sco:SCO7443 phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal
YP_004333672.1	KEGG: kra:Krad_3319 ROK family protein; PFAM: ROK
YP_004333673.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS
YP_004333674.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: rha:RHA1_ro08339 hypothetical protein
YP_004333678.1	PFAM: Monooxygenase, FAD-binding; KEGG: amd:AMED_4222 FAD-dependent oxidoreductase
YP_004333679.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_1662 transcriptional regulator, TetR family
YP_004333680.1	KEGG: kra:Krad_3604 hypothetical protein
YP_004333681.1	KEGG: nml:Namu_4893 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-G type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Nuclear transport factor 2
YP_004333682.1	PFAM: Protein of unknown function DUF574; KEGG: sen:SACE_4240 hypothetical protein
YP_004333683.1	SMART: Helix-turn-helix type 3; KEGG: sro:Sros_7488 hypothetical protein
YP_004333684.1	PFAM: Domain of unknown function DUF397; KEGG: sro:Sros_5628 hypothetical protein
YP_004333686.1	PFAM: Glycosyl transferase, group 1; KEGG: scl:sce5461 glycogen synthase
YP_004333687.1	TIGRFAM: Galactokinase; KEGG: svi:Svir_14320 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal
YP_004333688.1	TIGRFAM: Galactose-1-phosphate uridyl transferase, class I; KEGG: mau:Micau_5380 galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal; Galactose-1-phosphate uridyl transferase, C-terminal
YP_004333689.1	KEGG: ami:Amir_0618 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal
YP_004333690.1	KEGG: ami:Amir_6118 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter
YP_004333691.1	KEGG: kra:Krad_3708 hypothetical protein
YP_004333693.1	KEGG: sen:SACE_4589 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004333694.1	KEGG: tcu:Tcur_4638 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004333695.1	KEGG: amd:AMED_5080 hypothetical protein
YP_004333696.1	KEGG: sro:Sros_8238 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004333697.1	KEGG: svi:Svir_32120 ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II aldolase/adducin, N-terminal
YP_004333698.1	KEGG: fre:Franean1_0930 PucR family transcriptional regulator
YP_004333699.1	KEGG: sco:SCO6759 phytoene synthase; TIGRFAM: Squalene synthase HpnC; PFAM: Squalene/phytoene synthase
YP_004333700.1	TIGRFAM: Squalene/phytoene synthase HpnD; KEGG: fre:Franean1_5716 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase
YP_004333701.1	KEGG: scb:SCAB_12971 phytoene dehydrogenase; TIGRFAM: Squalene-associated FAD-dependent desaturase; PFAM: Amine oxidase
YP_004333702.1	KEGG: sma:SAV_2997 polyprenyl diphosphate synthase; PFAM: Polyprenyl synthetase
YP_004333703.1	TIGRFAM: Hopene cyclase; Squalene cyclase; KEGG: ace:Acel_1697 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase
YP_004333704.1	PFAM: LytB protein; Nucleoside phosphorylase domain; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: fri:FraEuI1c_5916 hydroxymethylbutenyl pyrophosphate reductase
YP_004333705.1	KEGG: sgr:SGR_960 hypothetical protein; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM
YP_004333706.1	KEGG: sen:SACE_4324 hypothetical protein
YP_004333707.1	PFAM: Monogalactosyldiacylglycerol synthase; Glycosyl transferase, family 28, C-terminal; KEGG: sen:SACE_4322 hypothetical protein
YP_004333708.1	PFAM: O-acyltransferase, WSD1, N-terminal; KEGG: sen:SACE_4322 hypothetical protein
YP_004333709.1	KEGG: sen:SACE_4320 integral membrane protein
YP_004333710.1	KEGG: sen:SACE_4323 short chain dehydrogenase/reductase oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004333711.1	PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: sro:Sros_5387 3-dehydroquinate dehydratase
YP_004333712.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cak:Caul_3647 GCN5-like N-acetyltransferase
YP_004333713.1	KEGG: req:REQ_03160 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333714.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bch:Bcen2424_0180 major facilitator transporter
YP_004333715.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: tcu:Tcur_4712 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004333716.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rer:RER_00660 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004333717.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rer:RER_00650 ABC transporter permease
YP_004333718.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0116 binding-protein-dependent transport systems inner membrane component
YP_004333719.1	PFAM: 4Fe-4S binding domain; KEGG: mav:MAV_3500  ferredoxin FdxA
YP_004333720.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_3398 extracellular solute-binding protein
YP_004333721.1	KEGG: reu:Reut_B5781 Rieske (2Fe-2S) region; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004333722.1	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: svi:Svir_38400 4-carboxy-4-hydroxy-2-oxoadipate aldolase
YP_004333723.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: svi:Svir_38410 uncharacterized LmbE-like protein
YP_004333724.1	KEGG: ach:Achl_3363 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004333725.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rde:RD1_3941 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
YP_004333726.1	KEGG: svi:Svir_38390 predicted hydrolase or acyltransferase of alpha/beta superfamily
YP_004333727.1	PFAM: Muconolactone delta-isomerase; KEGG: svi:Svir_38380 muconolactone delta-isomerase
YP_004333728.1	KEGG: azl:AZL_a11060 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
YP_004333729.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: swi:Swit_2666 alpha/beta hydrolase fold
YP_004333730.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: bha:BH0777 acetoin dehydrogenase (TPP-dependent) beta chain; SMART: Transketolase-like, pyrimidine-binding domain
YP_004333731.1	KEGG: cwo:Cwoe_4083 pyruvate dehydrogenase (acetyl-transferring); PFAM: Dehydrogenase, E1 component
YP_004333732.1	PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; KEGG: dat:HRM2_47610 PdhB; SMART: Transketolase-like, pyrimidine-binding domain
YP_004333733.1	KEGG: bha:BH0776 acetoin dehydrogenase (TPP-dependent) alpha chain; PFAM: Dehydrogenase, E1 component
YP_004333734.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: lch:Lcho_0839 xylose isomerase domain-containing protein
YP_004333735.1	KEGG: cwo:Cwoe_0765 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004333736.1	KEGG: nml:Namu_0675 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004333737.1	KEGG: rxy:Rxyl_0351 alcohol dehydrogenase GroES-like protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004333738.1	KEGG: pjd:Pjdr2_2937 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004333739.1	KEGG: mno:Mnod_3276 hypothetical protein
YP_004333740.1	KEGG: cwo:Cwoe_5069 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333741.1	KEGG: fre:Franean1_6831 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333742.1	PFAM:  cyclase; KEGG: cwo:Cwoe_5006 cyclase protein
YP_004333743.1	PFAM: Amidohydrolase 2; KEGG: htu:Htur_3788 amidohydrolase 2
YP_004333744.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: mpt:Mpe_A3531 hydrolase or acyltransferase-like protein
YP_004333745.1	KEGG: bra:BRADO5799 hypothetical protein
YP_004333746.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: sno:Snov_3530 oxidoreductase domain protein
YP_004333747.1	KEGG: sti:Sthe_3439 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333748.1	PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_1562 extracellular ligand-binding receptor
YP_004333749.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: sus:Acid_3282 xylose isomerase domain-containing protein
YP_004333750.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: rha:RHA1_ro08624 acetoin dehydrogenase beta subunit; SMART: Transketolase-like, pyrimidine-binding domain
YP_004333751.1	KEGG: rha:RHA1_ro08623 acetoin dehydrogenase alpha subunit; PFAM: Dehydrogenase, E1 component
YP_004333752.1	KEGG: bbr:BB2766  short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333753.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll2712 hypothetical protein
YP_004333754.1	PFAM: ABC transporter-like; KEGG: sti:Sthe_3114 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004333755.1	PFAM: ABC transporter-like; KEGG: met:M446_5639 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004333756.1	PFAM: ABC transporter permease; KEGG: axy:AXYL_01367 inner-membrane translocator 18
YP_004333757.1	PFAM: ABC transporter permease; KEGG: xau:Xaut_1619 inner-membrane translocator
YP_004333758.1	KEGG: gob:Gobs_5039 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333759.1	KEGG: dal:Dalk_4047 propanoyl-CoA C-acyltransferase
YP_004333760.1	KEGG: bxe:Bxe_A2763  SCP-x_thiolase/acetyl-CoA acetyltransferase, PaaJ-like
YP_004333761.1	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bxe:Bxe_A2762 hypothetical protein
YP_004333762.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mxa:MXAN_4266 zinc-binding dehydrogenase oxidoreductase; SMART: Polyketide synthase, enoylreductase
YP_004333763.1	KEGG: bxe:Bxe_C0355  AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004333764.1	PFAM:  cyclase; KEGG: swi:Swit_2102 cyclase protein
YP_004333765.1	KEGG: ami:Amir_5665 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004333766.1	KEGG: dac:Daci_2567 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004333767.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: slo:Shew_2734 4-carboxymuconolactone decarboxylase
YP_004333768.1	PFAM: Cupin 2, conserved barrel; KEGG: mrd:Mrad2831_3249 cupin 2 domain-containing protein
YP_004333769.1	KEGG: rha:RHA1_ro02613 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333770.1	PFAM: Amino acid permease domain; KEGG: xce:Xcel_3068 amino acid permease-associated region
YP_004333771.1	PFAM: Amino acid permease domain; KEGG: rha:RHA1_ro02609 amino acid transporter
YP_004333772.1	PFAM: Copper amine oxidase, C-terminal; Copper amine oxidase, N3-terminal; Copper amine oxidase, N2-terminal; KEGG: gob:Gobs_1923 primary-amine oxidase
YP_004333773.1	KEGG: mkm:Mkms_2739 hypothetical protein
YP_004333775.1	KEGG: swi:Swit_0904 UbiD family decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related
YP_004333776.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: met:M446_4655 3-oxoadipate enol-lactonase
YP_004333777.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: tro:trd_A0068 aldehyde dehydrogenase subunit III
YP_004333778.1	KEGG: tro:trd_A0069 probable xanthine dehydrogenase subunit D (XDHase subunit D); PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004333779.1	PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: tbi:Tbis_2230 molybdopterin dehydrogenase FAD-binding protein
YP_004333780.1	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: rsq:Rsph17025_1141 carbon monoxide dehydrogenase subunit G
YP_004333781.1	KEGG: scb:SCAB_81001 repressor of aceBA operon; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333782.1	PFAM: Major facilitator superfamily MFS-1; KEGG: acr:Acry_0452 major facilitator transporter
YP_004333783.1	PFAM: Major facilitator superfamily MFS-1; KEGG: vdi:Vdis_1658 major facilitator superfamily protein
YP_004333784.1	KEGG: fal:FRAAL2367  glutamate synthase(ferredoxin); PFAM: Glutamate synthase, central-C
YP_004333785.1	TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: ace:Acel_1799 methylmalonate-semialdehyde dehydrogenase (acylating); PFAM: Aldehyde dehydrogenase domain
YP_004333786.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: amd:AMED_4864 short-chain dehydrogenase/reductase SDR
YP_004333787.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: aau:AAur_0255  3-hydroxybutyrate dehydrogenase
YP_004333788.1	PFAM: Protein of unknown function, DUF1537; KEGG: cdi:DIP2080 hypothetical protein
YP_004333789.1	KEGG: aau:AAur_0252 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004333790.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: bmj:BMULJ_05022 UDP-glucose 4-epimerase
YP_004333791.1	KEGG: sma:SAV_50 hypothetical protein
YP_004333792.1	KEGG: bpf:BpOF4_19035 hypothetical protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004333793.1	PFAM: YCII-related; KEGG: gob:Gobs_1899 YCII-like protein
YP_004333794.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: rdn:HMPREF0733_11511 hypothetical protein
YP_004333795.1	KEGG: rha:RHA1_ro05363 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004333797.1	KEGG: amd:AMED_8897 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004333798.1	PFAM: YCII-related; KEGG: kfl:Kfla_3164 YCII-related protein
YP_004333799.1	KEGG: amd:AMED_8895 ketosteroid isomerase-like protein
YP_004333800.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cwo:Cwoe_0347 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004333801.1	HAMAP: DNA polymerase IV; KEGG: rop:ROP_10970 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_004333802.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: fre:Franean1_3145 PadR-like family transcriptional regulator
YP_004333803.1	KEGG: pfh:PFHG_01077 conserved hypothetical protein
YP_004333804.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004333805.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sti:Sthe_0680 extracellular solute-binding protein family 5
YP_004333807.1	KEGG: msp:Mspyr1_20770 NAD+ synthetase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004333808.1	PFAM: Uncharacterised protein family UPF0126; KEGG: nml:Namu_1723 hypothetical protein
YP_004333809.1	KEGG: svi:Svir_17480 predicted signal-transduction protein containing cAMP-binding and CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004333810.1	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: met:M446_1737 hypothetical protein
YP_004333811.1	KEGG: gob:Gobs_2385 cytochrome P450; PFAM: Cytochrome P450
YP_004333812.1	PFAM: Metallo-dependent phosphatase; KEGG: mva:Mvan_5813 metallophosphoesterase
YP_004333813.1	PFAM: Luciferase-like, subgroup; KEGG: nml:Namu_0526 luciferase-like monooxygenase
YP_004333814.1	KEGG: gob:Gobs_4432 hypothetical protein
YP_004333815.1	PFAM: Amino acid permease domain; KEGG: rer:RER_43210 amino acid transporter
YP_004333816.1	KEGG: req:REQ_07080 hydrolase/LuxR domain protein; PFAM: Transcription regulator LuxR, C-terminal; Alpha/beta hydrolase fold-1; SMART: Transcription regulator LuxR, C-terminal
YP_004333817.1	PFAM: Methyltransferase type 11; KEGG: req:REQ_07070 sam dependent methyltransferase
YP_004333818.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: mkm:Mkms_1622 deaminase-reductase domain-containing protein
YP_004333819.1	PFAM: Helix-turn-helix, HxlR type; KEGG: nca:Noca_4912 helix-turn-helix, HxlR type
YP_004333820.1	PFAM: Methyltransferase type 11; KEGG: nca:Noca_4919 methyltransferase type 11
YP_004333821.1	KEGG: mjl:Mjls_0026 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1
YP_004333822.1	KEGG: sen:SACE_1932 formamidase; PFAM: Acetamidase/Formamidase
YP_004333823.1	TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, KEGG: krh:KRH_22990  regulatory protein; SMART: Regulatory protein, FmdB
YP_004333824.1	KEGG: sma:SAV_1189 regulatory protein
YP_004333825.1	KEGG: cai:Caci_6436 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004333826.1	SMART: ATPase, AAA+ type, core; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; KEGG: ami:Amir_1616 GTP-binding protein EngA; HAMAP: GTP-binding, EngA; PFAM: GTP-binding protein, HSR1-related
YP_004333827.1	KEGG: sen:SACE_5233 1-acylglycerol-3-phosphate O-acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004333828.1	PFAM: Cytidylate kinase domain; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: sen:SACE_5234 cytidylate kinase
YP_004333829.1	KEGG: nda:Ndas_0977 chorismate mutase; TIGRFAM: Chorismate mutase, AroH class; PFAM: Chorismate mutase, AroH class
YP_004333830.1	TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: svi:Svir_25330 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4
YP_004333831.1	KEGG: sen:SACE_5238  segregation and condensation protein B; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote
YP_004333832.1	PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: ami:Amir_5427 chromosome segregation and condensation protein ScpA
YP_004333833.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sen:SACE_5241 chromosome partitioning protein (partial match)
YP_004333834.1	KEGG: cwo:Cwoe_0260 hypothetical protein
YP_004333835.1	TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: msm:MSMEG_3744 site-specific tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage
YP_004333836.1	KEGG: req:REQ_23690 fmn-dependent monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; PFAM: Luciferase-like, subgroup
YP_004333837.1	PFAM: NUDIX hydrolase domain; KEGG: rop:ROP_06630  ADP-ribose pyrophosphatase
YP_004333838.1	PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: sen:SACE_5244 CTP synthetase
YP_004333839.1	KEGG: amd:AMED_6021 hypothetical protein
YP_004333840.1	KEGG: amd:AMED_6022 hypothetical protein
YP_004333841.1	KEGG: ami:Amir_5439 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC
YP_004333842.1	KEGG: tcu:Tcur_2170 ATP-NAD/AcoX kinase; HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted
YP_004333843.1	TIGRFAM: Haemolysin A; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gbr:Gbro_2828 hemolysin A; SMART: RNA-binding S4
YP_004333845.1	KEGG: sen:SACE_5252 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase
YP_004333846.1	KEGG: sen:SACE_5253 hypothetical protein
YP_004333847.1	KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein
YP_004333848.1	TIGRFAM: Methylpurine-DNA glycosylase (MPG); HAMAP: Methylpurine-DNA glycosylase (MPG); KEGG: amd:AMED_6033 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG)
YP_004333849.1	KEGG: bcm:Bcenmc03_1755 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004333851.1	PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: rha:RHA1_ro00949 argininosuccinate lyase
YP_004333852.1	PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: nca:Noca_2474 argininosuccinate synthase
YP_004333853.1	TIGRFAM: Arginine repressor; HAMAP: Arginine repressor; KEGG: mab:MAB_2341 arginine repressor ArgR; PFAM: Arginine repressor, DNA-binding domain; Arginine repressor, C-terminal
YP_004333854.1	PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: mkm:Mkms_3012 ornithine carbamoyltransferase
YP_004333855.1	PFAM: Aminotransferase class-III; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: rop:ROP_06840 acetylornithine aminotransferase
YP_004333856.1	TIGRFAM: Acetylglutamate kinase; KEGG: sen:SACE_5260 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_004333857.1	PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: sen:SACE_5261 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
YP_004333858.1	KEGG: ami:Amir_5456 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; SMART: Semialdehyde dehydrogenase, NAD-binding
YP_004333859.1	PFAM: DNA alkylation repair enzyme; KEGG: amd:AMED_6049  DNA alkylation repair enzyme
YP_004333860.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: amd:AMED_6050 phenylalanyl-tRNA synthetase beta chain; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial
YP_004333861.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; KEGG: ami:Amir_5465 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal
YP_004333862.1	KEGG: ami:Amir_5470 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding
YP_004333863.1	TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: fri:FraEuI1c_1703 ribosomal protein L20; PFAM: Ribosomal protein L20
YP_004333864.1	TIGRFAM: Ribosomal protein L35, non-mitochondrial; HAMAP: Ribosomal protein L35, non-mitochondrial; KEGG: svi:Svir_25680 50S ribosomal protein L35; PFAM: Ribosomal protein L35
YP_004333865.1	TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor 3; KEGG: ami:Amir_5473 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal
YP_004333866.1	TIGRFAM: Excinuclease ABC, A subunit; HAMAP: Excinuclease ABC, A subunit; KEGG: nfa:nfa19110 excinuclease ABC subunit A; PFAM: ABC transporter-like
YP_004333867.1	KEGG: svi:Svir_25780 Zn-dependent hydrolase, glyoxylase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004333868.1	PFAM: Polyketide cyclase/dehydrase; KEGG: rha:RHA1_ro04095 hypothetical protein
YP_004333869.1	KEGG: amd:AMED_6371 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator
YP_004333871.1	KEGG: tbi:Tbis_3037 peptidase S9B dipeptidylpeptidase IV domain-containing protein
YP_004333872.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ami:Amir_2551 major facilitator superfamily MFS_1
YP_004333873.1	PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: ami:Amir_5503 peptidylprolyl isomerase FKBP-type
YP_004333874.1	manually curated; TIGRFAM: Phosphodiesterase MJ0936; KEGG: sen:SACE_5374  phosphoesterase; PFAM: Metallo-dependent phosphatase
YP_004333875.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mil:ML5_3936 antibiotic biosynthesis monooxygenase
YP_004333876.1	PFAM: ABC transporter-like; Dienelactone hydrolase; KEGG: amd:AMED_6109 ABC transport system ATP-binding protein fused with dipeptidyl-peptidase; SMART: ATPase, AAA+ type, core; Peptidase S15/CocE/NonD, C-terminal
YP_004333877.1	KEGG: ami:Amir_5515 hypothetical protein
YP_004333878.1	KEGG: amd:AMED_0033 hypothetical protein
YP_004333879.1	PFAM: Drug/metabolite transporter; KEGG: amd:AMED_8893 drug/metabolite transporter, DME family
YP_004333880.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sen:SACE_0264 LysR family transcriptional regulator
YP_004333881.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_4764 transcriptional regulator, TetR family
YP_004333882.1	KEGG: mau:Micau_0827 DoxX family protein
YP_004333883.1	KEGG: sma:SAV_7325 hypothetical protein
YP_004333884.1	KEGG: gbr:Gbro_2704 hypothetical protein
YP_004333885.1	KEGG: nfa:nfa13740 hypothetical protein
YP_004333886.1	PFAM: Protein of unknown function DUF2029; KEGG: nfa:nfa44660 hypothetical protein
YP_004333887.1	SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: nfa:nfa19020 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein
YP_004333888.1	PFAM: Domain of unknown function DUF402; KEGG: svi:Svir_25910 hypothetical protein
YP_004333889.1	KEGG: mva:Mvan_0621 hypothetical protein
YP_004333890.1	KEGG: cai:Caci_8916 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004333891.1	PFAM: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: gbr:Gbro_2870 dephospho-CoA kinase
YP_004333892.1	KEGG: ami:Amir_5521 hypothetical protein
YP_004333893.1	KEGG: sen:SACE_5431 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1
YP_004333894.1	PFAM: Methyltransferase type 11; KEGG: ami:Amir_5523 methyltransferase type 11
YP_004333895.1	KEGG: ami:Amir_5533 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_004333896.1	PFAM: Extracellular ligand-binding receptor; KEGG: nml:Namu_3060 extracellular ligand-binding receptor
YP_004333897.1	PFAM: ABC transporter permease; KEGG: mjl:Mjls_3034 inner-membrane translocator
YP_004333898.1	PFAM: ABC transporter permease; KEGG: rsa:RSal33209_0250 branched-chain amino acid transport system permease
YP_004333899.1	PFAM: ABC transporter-like; KEGG: nml:Namu_3057 ABC transporter-like protein; SMART: ATPase, AAA+ type, core
YP_004333900.1	PFAM: ABC transporter-like; KEGG: mil:ML5_3917 abc transporter related protein; SMART: ATPase, AAA+ type, core
YP_004333901.1	KEGG: amd:AMED_6148 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; ANTAR; SMART: Signal transduction response regulator, receiver domain
YP_004333902.1	PFAM: Domain of unknown function DUF1565; KEGG: scl:sce6360 hypothetical protein
YP_004333904.1	PFAM: Glycosyl transferase, family 28; KEGG: sen:SACE_6675 UDP-glucose:sterol glucosyltransferase
YP_004333905.1	KEGG: amd:AMED_4379 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004333906.1	KEGG: sco:SCO1025 integral membrane protein
YP_004333907.1	KEGG: svi:Svir_16950 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004333908.1	KEGG: tbi:Tbis_2596 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004333909.1	KEGG: kfl:Kfla_2125 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_004333910.1	TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: amd:AMED_7266 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004333911.1	TIGRFAM: Glyoxylate carboligase; KEGG: psa:PST_3114 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain
YP_004333912.1	TIGRFAM: Glycerate kinase; KEGG: tbi:Tbis_2591 glycerate kinase; PFAM: Glycerate kinase
YP_004333913.1	KEGG: saq:Sare_2893 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004333914.1	KEGG: cwo:Cwoe_1171 chorismate binding-like protein; PFAM: Chorismate binding, C-terminal; Aminotransferase, class IV
YP_004333915.1	PFAM: YkuD domain; KEGG: nfa:nfa51960 hypothetical protein
YP_004333916.1	KEGG: amd:AMED_0317 esterase/lipase-like protein
YP_004333917.1	KEGG: amd:AMED_0275 lysyl-tRNA synthetase
YP_004333918.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: kfl:Kfla_6852 transcriptional regulator, TetR family
YP_004333919.1	KEGG: nml:Namu_4881 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004333920.1	KEGG: rop:ROP_06490  fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004333921.1	PFAM: Protein of unknown function DUF1232; KEGG: mil:ML5_1161 hypothetical protein
YP_004333922.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: fre:Franean1_6014 PadR-like family transcriptional regulator
YP_004333923.1	KEGG: saq:Sare_4881 hypothetical protein
YP_004333924.1	KEGG: sro:Sros_9286 CO dehydrogenase maturation factor-like protein
YP_004333925.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: nmg:Nmag_1492 fumarylacetoacetate (FAA) hydrolase
YP_004333926.1	PFAM: Luciferase-like, subgroup; KEGG: bts:Btus_1281 luciferase-like, subgroup
YP_004333927.1	KEGG: sro:Sros_6284 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004333928.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: ade:Adeh_2212 LysR family transcriptional regulator
YP_004333929.1	TIGRFAM: 6-phosphogluconate dehydrogenase-related protein; KEGG: fal:FRAAL1567 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal
YP_004333930.1	TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: sna:Snas_2996 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding
YP_004333931.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sen:SACE_2942 hypothetical protein
YP_004333932.1	PFAM: Methyltransferase type 11; KEGG: gob:Gobs_0108 type 11 methyltransferase
YP_004333933.1	KEGG: fal:FRAAL4738 LuxR family transcriptional regulator
YP_004333935.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: nml:Namu_4764 transposase IS111A/IS1328/IS1533
YP_004333936.1	KEGG: met:M446_6961 nitrile hydratase
YP_004333937.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: rcu:RCOM_1892310 Nitrile hydratase subunit alpha, PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004333938.1	PFAM: FAD linked oxidase, N-terminal; KEGG: nml:Namu_2915 FAD linked oxidase domain-containing protein
YP_004333939.1	KEGG: rha:RHA1_ro09027 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR
YP_004333940.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: vei:Veis_0939 extracellular solute-binding protein
YP_004333941.1	KEGG: bja:blr0938  dioxygenase; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004333943.1	KEGG: bxe:Bxe_A3529 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004333944.1	KEGG: rha:RHA1_ro10365 dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like
YP_004333945.1	KEGG: tro:trd_A0791 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004333946.1	PFAM: Protein of unknown function DUF1707; KEGG: cai:Caci_0710 protein of unknown function DUF1707
YP_004333947.1	KEGG: sro:Sros_7324 hypothetical protein
YP_004333948.1	PFAM: Major facilitator superfamily MFS-1; KEGG: tcu:Tcur_4727 major facilitator superfamily protein
YP_004333949.1	KEGG: mil:ML5_2285 hypothetical protein
YP_004333950.1	PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; KEGG: amd:AMED_1985 pyruvate dehydrogenase E1 component; SMART: Transketolase-like, pyrimidine-binding domain
YP_004333951.1	KEGG: rha:RHA1_ro00541 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004333952.1	PFAM: Beta-lactamase-related; KEGG: gob:Gobs_4863 beta-lactamase
YP_004333953.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: tcu:Tcur_4894 alcohol dehydrogenase zinc-binding domain-containing protein; SMART: Polyketide synthase, enoylreductase
YP_004333954.1	PFAM: Major facilitator superfamily MFS-1; KEGG: msm:MSMEG_0534 permease, major facilitator family protein
YP_004333955.1	KEGG: rop:ROP_42840  GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004333956.1	KEGG: sna:Snas_4855 hypothetical protein
YP_004333959.1	HAMAP: DNA polymerase IV; KEGG: cai:Caci_5822 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_004333960.1	KEGG: fre:Franean1_3778 hypothetical protein
YP_004333961.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gob:Gobs_0487 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004333962.1	KEGG: fre:Franean1_3777 exonuclease SbcC
YP_004333963.1	KEGG: fre:Franean1_3776 nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD; PFAM: Metallo-dependent phosphatase
YP_004333964.1	PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase
YP_004333965.1	KEGG: rer:pREL1_0202 hypothetical protein; manually curated; PFAM: Integrase, N-terminal SAM-like, phage
YP_004333966.1	KEGG: msp:Mspyr1_54050 transcriptional regulator
YP_004333967.1	PFAM: Integrase, catalytic core, phage; KEGG: msp:Mspyr1_54040 site-specific recombinase XerD
YP_004333969.1	PFAM: Domain of unknown function DUF302; KEGG: bbt:BBta_1896 hypothetical protein
YP_004333970.1	KEGG: fre:Franean1_3775 hypothetical protein
YP_004333971.1	KEGG: mav:MAV_3625 hypothetical protein
YP_004333972.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; KEGG: ami:Amir_1444 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM
YP_004333973.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; Twin-arginine translocation pathway, signal sequence; KEGG: ami:Amir_1445 TRAP transporter solute receptor, TAXI family
YP_004333974.1	KEGG: amd:AMED_5688 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Tetratricopeptide TPR2
YP_004333975.1	PFAM: YCII-related; KEGG: rop:ROP_45120 hypothetical protein
YP_004333976.1	TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: sna:Snas_0200 hypothetical protein
YP_004333977.1	KEGG: amd:AMED_2365 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004333978.1	KEGG: ami:Amir_1447 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004333979.1	PFAM: ABC transporter-like; KEGG: amd:AMED_2363 ATPase component of ABC-type polar amino acid transport system; SMART: ATPase, AAA+ type, core
YP_004333980.1	KEGG: amd:AMED_2362 ABC transport system substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004333981.1	KEGG: svi:Svir_27720 amino acid ABC transporter membrane protein; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004333982.1	KEGG: ami:Amir_1451 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004333983.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: kfl:Kfla_6908 lysine exporter protein (LysE/YggA)
YP_004333984.1	KEGG: sco:SCO1748 expression regulator
YP_004333985.1	HAMAP: Glutamate-ammonia-ligase adenylyltransferase; KEGG: ami:Amir_0913 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase
YP_004333986.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fra:Francci3_1854 GCN5-related N-acetyltransferase
YP_004333987.1	TIGRFAM: Glutamine synthetase type I; KEGG: sen:SACE_1613 glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004333988.1	PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; KEGG: amd:AMED_1217 exported protease
YP_004333989.1	PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: amd:AMED_1209 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_004333990.1	PFAM: Glutamate--cysteine ligase, GCS2; KEGG: ava:Ava_4623 hypothetical protein
YP_004333991.1	PFAM: Nitroreductase-like; KEGG: azc:AZC_0950  nitroreductase
YP_004333992.1	KEGG: sen:SACE_1600 ribonuclease R; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R
YP_004333994.1	KEGG: sma:SAV_6344 hypothetical protein
YP_004333995.1	TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: mau:Micau_4347 hypothetical protein
YP_004333996.1	KEGG: svi:Svir_20690 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004333997.1	KEGG: sen:SACE_5140 carbon monoxide dehydrogenase large chain; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004333998.1	TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; KEGG: sen:SACE_1784 fumarate hydratase class I; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain
YP_004333999.1	KEGG: sen:SACE_1888  alanine rich lipoprotein LppW
YP_004334000.1	KEGG: sen:SACE_1780 acetyl-CoA synthetase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding
YP_004334001.1	KEGG: ami:Amir_1468 histone deacetylase superfamily; PFAM: Histone deacetylase superfamily
YP_004334002.1	KEGG: ami:Amir_1465 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor, diptheria toxin type
YP_004334003.1	TIGRFAM: UDP-glucose 4-epimerase; KEGG: sen:SACE_1774 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004334004.1	KEGG: ami:Amir_1461 hypothetical protein
YP_004334005.1	PFAM: Peptidase M23; KEGG: req:REQ_10850 metallopeptidase
YP_004334006.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: rop:ROP_13260 indolepyruvate ferredoxin oxidoreductase
YP_004334007.1	KEGG: gob:Gobs_2329 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004334008.1	KEGG: sro:Sros_5635 hypothetical protein
YP_004334009.1	PFAM: Beta-lactamase-like; KEGG: req:REQ_10450 metallo-beta-lactamase superfamily protein
YP_004334010.1	KEGG: svi:Svir_17040 hypothetical protein
YP_004334011.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa43330  short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004334012.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_1156 MDR-like permease
YP_004334013.1	KEGG: ami:Amir_5685 aromatic-L-amino-acid decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase
YP_004334014.1	PFAM: Periplasmic binding protein; KEGG: req:REQ_03550 substrate binding lipoprotein
YP_004334015.1	KEGG: sen:SACE_2691 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal
YP_004334016.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_3446 TetR family transcriptional regulator
YP_004334017.1	KEGG: tbi:Tbis_0526 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004334018.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_56230 3-hydroxyacyl-CoA dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004334019.1	TIGRFAM: Thiolase; KEGG: amd:AMED_3855 acetyl-CoA acyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004334020.1	KEGG: ace:Acel_0606 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334021.1	PFAM: Major facilitator superfamily MFS-1; Collagen-binding surface protein Cna-like, B-type domain; KEGG: amd:AMED_2033 MFS transporter, multidrug efflux transporter
YP_004334022.1	KEGG: nfa:nfa11310 hypothetical protein
YP_004334023.1	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: mil:ML5_5681 acyl-CoA dehydrogenase domain-containing protein
YP_004334024.1	KEGG: sen:SACE_3154 biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; Carboxyl transferase; SMART: Biotin carboxylase, C-terminal
YP_004334025.1	KEGG: mva:Mvan_0393 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal
YP_004334026.1	PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: mkm:Mkms_5277 acyl-CoA dehydrogenase domain-containing protein
YP_004334028.1	PFAM: UspA; KEGG: sma:SAV_7295 hypothetical protein
YP_004334029.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ace:Acel_0045 major facilitator transporter
YP_004334030.1	KEGG: ace:Acel_0044 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334031.1	KEGG: amd:AMED_8818 hypothetical protein
YP_004334032.1	KEGG: mva:Mvan_1920  short chain dehydrogenase
YP_004334033.1	KEGG: nml:Namu_3908 exodeoxyribonuclease V subunit gamma; TIGRFAM: Exodeoxyribonuclease V, RecC subunit
YP_004334034.1	TIGRFAM: Exodeoxyribonuclease V, beta subunit; KEGG: cfl:Cfla_2429 exodeoxyribonuclease V; PFAM: DNA helicase, UvrD/REP type
YP_004334035.1	TIGRFAM: Exodeoxyribonuclease V, alpha subunit; KEGG: nml:Namu_3906 exodeoxyribonuclease V subunit alpha; SMART: ATPase, AAA+ type, core
YP_004334036.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Signal transduction response regulator, receiver domain; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: fal:FRAAL1961  thioredoxin reductase; SMART: Signal transduction response regulator, receiver domain
YP_004334037.1	KEGG: rha:RHA1_ro04003 sensor kinase, two-component system; PFAM: ATPase-like, ATP-binding domain; Cyclic nucleotide-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004334038.1	KEGG: req:REQ_46000 hypothetical protein
YP_004334039.1	KEGG: lxx:Lxx21740 hypothetical protein
YP_004334040.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: mil:ML5_5193 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004334041.1	KEGG: fri:FraEuI1c_0839 drug resistance transporter, Bcr/CflA subfamily; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004334042.1	PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; KEGG: amd:AMED_2697 SARP family transcriptional regulator fused with ATPase domain
YP_004334043.1	PFAM: Branched-chain amino acid transport, AzlD; KEGG: rsk:RSKD131_2097 branched-chain amino acid transport
YP_004334044.1	PFAM: Branched-chain amino acid transport, permease; KEGG: hla:Hlac_1381 AzlC family protein
YP_004334045.1	KEGG: nca:Noca_1870 regulatory protein, MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334046.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpt:Mpe_A1008 hypothetical protein
YP_004334047.1	KEGG: ske:Sked_05160 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004334048.1	PFAM: Cysteine-rich domain; KEGG: mjl:Mjls_4766 hypothetical protein
YP_004334049.1	KEGG: fal:FRAAL3348  Fe4-S4 ferredoxin; TIGRFAM: Iron-sulphur cluster binding protein; PFAM: Domain of unknown function DUF162
YP_004334050.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: scb:SCAB_29181 hypothetical protein
YP_004334051.1	KEGG: nfa:nfa36990 hypothetical protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing
YP_004334052.1	KEGG: fre:Franean1_4792 hypothetical protein
YP_004334053.1	KEGG: fre:Franean1_4793 hypothetical protein
YP_004334054.1	KEGG: fre:Franean1_4794 membrane protein
YP_004334055.1	KEGG: fre:Franean1_1848 hypothetical protein
YP_004334056.1	KEGG: aau:AAur_pTC20181 pyridoxal-phosphate dependent enzyme; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004334057.1	KEGG: bge:BC1002_5910 hypothetical protein
YP_004334058.1	KEGG: rha:RHA1_ro00619 alkanesulfonate monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup
YP_004334059.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_3206 major facilitator transporter
YP_004334060.1	KEGG: bmj:BMULJ_04328 serine/threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004334061.1	PFAM: Cobalamin (vitamin B12)-binding; KEGG: ami:Amir_0967 cobalamin B12-binding domain protein
YP_004334062.1	KEGG: mil:ML5_5570 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like
YP_004334064.1	PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: amd:AMED_3432  RNA pseudouridylate synthase
YP_004334065.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: smd:Smed_5816 NADP oxidoreductase coenzyme F420-dependent
YP_004334066.1	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fal:FRAAL3649 LysR family transcriptional regulator
YP_004334067.1	KEGG: fra:Francci3_2566 hypothetical protein
YP_004334068.1	KEGG: rer:RER_18000 oxidoreductase; PFAM: FMN-dependent dehydrogenase
YP_004334069.1	KEGG: tbi:Tbis_0974 histidine kinase
YP_004334071.1	PFAM: Beta-lactamase-related; KEGG: sna:Snas_3562 beta-lactamase
YP_004334072.1	KEGG: sro:Sros_3610 hypothetical protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal
YP_004334073.1	KEGG: mav:MAV_4566 hypothetical protein
YP_004334074.1	SMART: HTH transcriptional regulator, DeoR N-terminal; KEGG: sen:SACE_7336 DeoR family transcriptional regulator
YP_004334075.1	KEGG: amd:AMED_6092 hypothetical protein; manually curated; HAMAP: Uncharacterised protein family UPF0225
YP_004334076.1	PFAM: ABC transporter-like; KEGG: cai:Caci_5807 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004334077.1	PFAM: ABC transporter-like; KEGG: cai:Caci_5809 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004334078.1	PFAM: Major facilitator superfamily MFS-1; KEGG: gbr:Gbro_0902 major facilitator superfamily protein
YP_004334079.1	TIGRFAM: Trehalose synthase; KEGG: mkm:Mkms_0356 trehalose synthase
YP_004334080.1	KEGG: amd:AMED_5931 hypothetical protein
YP_004334081.1	PFAM: Peptidase M28; KEGG: nml:Namu_2824 peptidase M28
YP_004334082.1	KEGG: art:Arth_0977 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal
YP_004334083.1	PFAM: Protein of unknown function DUF1470; KEGG: amd:AMED_3547 hypothetical protein
YP_004334084.1	KEGG: reu:Reut_C6041 hypothetical protein
YP_004334085.1	KEGG: bja:bll0271 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004334086.1	KEGG: bja:bll0271 hypothetical protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004334087.1	KEGG: sgr:SGR_6537 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Domain of unknown function DUF1503
YP_004334088.1	KEGG: mjl:Mjls_0419 hypothetical protein
YP_004334089.1	PFAM: Cupin 2, conserved barrel; KEGG: nda:Ndas_1181 cupin 2 conserved barrel domain protein
YP_004334090.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: gbr:Gbro_2555 alpha/beta hydrolase fold protein
YP_004334091.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: rpc:RPC_4620 hypothetical protein
YP_004334093.1	KEGG: amd:AMED_5171 dynamin family protein
YP_004334094.1	KEGG: mkm:Mkms_5685 hypothetical protein
YP_004334095.1	KEGG: fal:FRAAL3972  aldo/keto oxidoreductase, NAD(P)-dependent, related to aryl-alcohol dehydrogenases; PFAM: NADP-dependent oxidoreductase domain
YP_004334096.1	PFAM: Protein of unknown function DUF574; KEGG: saq:Sare_1317 hypothetical protein
YP_004334097.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-3; KEGG: ami:Amir_6871 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif
YP_004334099.1	KEGG: gob:Gobs_2804 hypothetical protein
YP_004334100.1	KEGG: mjl:Mjls_0719 hypothetical protein
YP_004334101.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nda:Ndas_5080 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004334102.1	KEGG: fre:Franean1_5228 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004334103.1	KEGG: pla:Plav_1774 alkanal monooxygenase; PFAM: Luciferase-like, subgroup
YP_004334104.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: kfl:Kfla_3790 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004334105.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: kfl:Kfla_3791 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004334106.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: tbi:Tbis_1849 binding-protein-dependent transporter inner membrane component
YP_004334107.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sro:Sros_5913 ABC-type dipeptide transport system periplasmic component-like protein
YP_004334108.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sro:Sros_5914 ABC transporter, permease
YP_004334109.1	PFAM: Polyketide cyclase/dehydrase; KEGG: fal:FRAAL2500 hypothetical protein
YP_004334110.1	KEGG: rop:ROP_23820 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004334111.1	KEGG: pla:Plav_1766 cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004334112.1	KEGG: rop:ROP_46170  oxidoreductase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup
YP_004334113.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rop:ROP_23780  TetR family transcriptional regulator
YP_004334114.1	KEGG: nml:Namu_0879 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core
YP_004334115.1	KEGG: nca:Noca_4298 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004334117.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: efa:EF0426 gluconate 5-dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004334118.1	KEGG: rha:RHA1_ro08377 hypothetical protein
YP_004334119.1	KEGG: rha:RHA1_ro02518 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004334120.1	KEGG: nml:Namu_1715 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal
YP_004334121.1	KEGG: mva:Mvan_2532 hypothetical protein
YP_004334122.1	KEGG: sgr:SGR_1958  catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive
YP_004334124.1	KEGG: msm:MSMEG_3335 transcriptional regulator, IclR family protein, PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004334125.1	PFAM: Aldehyde-lyase domain; KEGG: msm:MSMEG_6298 malyl-CoA lyase
YP_004334126.1	PFAM: MmgE/PrpD; KEGG: rop:ROP_31310 hypothetical protein
YP_004334127.1	KEGG: fal:FRAAL3412  alpha-methylacyl-CoA racemase; PFAM: CoA-transferase III
YP_004334128.1	KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004334129.1	PFAM: MaoC-like dehydratase; KEGG: sti:Sthe_1792 MaoC domain protein dehydratase
YP_004334130.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro05939 hypothetical protein
YP_004334131.1	PFAM: Protein of unknown function DUF2236; KEGG: sna:Snas_2225 hypothetical protein
YP_004334132.1	KEGG: nda:Ndas_1369 ATPase AAA-2 domain protein; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core
YP_004334133.1	KEGG: fri:FraEuI1c_4500  RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004334134.1	PFAM: YCII-related; KEGG: fri:FraEuI1c_4501 YCII-related protein
YP_004334135.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: amd:AMED_4721 activator of HSP90 ATPase
YP_004334136.1	PFAM: Domain of unknown function DUF125, transmembrane; KEGG: rop:ROP_21520 hypothetical membrane protein
YP_004334137.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004334138.1	KEGG: msm:MSMEG_6826 L-lactate permease; TIGRFAM: L-lactate permease; PFAM: L-lactate permease
YP_004334139.1	PFAM: Nitroreductase-like; KEGG: srt:Srot_1543 nitroreductase
YP_004334140.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; KEGG: avn:Avin_43690 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
YP_004334141.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: npu:Npun_R6557 alpha/beta hydrolase fold protein
YP_004334142.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rxy:Rxyl_0351 alcohol dehydrogenase GroES-like protein; SMART: Polyketide synthase, enoylreductase
YP_004334143.1	KEGG: bbe:BBR47_10970 glucose 1-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004334144.1	PFAM: Major facilitator superfamily MFS-1; KEGG: mta:Moth_2103 major facilitator transporter
YP_004334145.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: bur:Bcep18194_B1185 alpha/beta hydrolase
YP_004334146.1	KEGG: cak:Caul_1939 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004334147.1	PFAM: Luciferase-like, subgroup; KEGG: pla:Plav_0573 luciferase protein
YP_004334148.1	KEGG: gob:Gobs_4842  phytochrome sensor protein; PFAM: GAF; SMART: GAF
YP_004334149.1	KEGG: gob:Gobs_4842  phytochrome sensor protein; PFAM: GAF; SMART: GAF
YP_004334150.1	PFAM: Luciferase-like, subgroup; KEGG: fal:FRAAL4834  monooxygenase, FMN dependent
YP_004334151.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL4715 TetR family transcriptional regulator
YP_004334152.1	KEGG: ami:Amir_3198 acyl transferase
YP_004334153.1	KEGG: rer:RER_08310 zinc-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal
YP_004334154.1	KEGG: aac:Aaci_1851 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004334155.1	KEGG: nml:Namu_3832 hypothetical protein
YP_004334156.1	KEGG: sro:Sros_1038 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal
YP_004334157.1	PFAM: Monooxygenase, FAD-binding; KEGG: amd:AMED_5175 FAD-dependent oxidoreductase
YP_004334158.1	KEGG: amd:AMED_0662 hypothetical protein
YP_004334159.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gvi:glr3411 hypothetical protein
YP_004334160.1	KEGG: ami:Amir_3228 osmosensitive K channel His kinase sensor; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004334161.1	HAMAP: Potassium transporting ATPase, C subunit; KEGG: sen:SACE_6087 potassium-transporting ATPase C chain; PFAM: Potassium transporting ATPase, C subunit
YP_004334162.1	PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: sen:SACE_6088 potassium-transporting ATPase B chain
YP_004334163.1	PFAM: ATPase, K+ transporting, A subunit; TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: sen:SACE_6089 potassium-transporting ATPase subunit A
YP_004334164.1	TIGRFAM: ATPase, P-type, K+-transporting, F subunit; PFAM: ATPase, P-type, K+-transporting, F subunit
YP_004334166.1	KEGG: bra:BRADO2458  3-isopropylmalate dehydrogenase (LeuB); PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004334167.1	KEGG: gbr:Gbro_2862 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004334168.1	PFAM: Amidase; KEGG: rca:Rcas_2243 amidase
YP_004334169.1	KEGG: sgr:SGR_5476  acyl-CoA transferase; PFAM: CoA-transferase III
YP_004334170.1	KEGG: ctc:CTC01781 phenylhydantoinase; PFAM: Amidohydrolase 1
YP_004334171.1	KEGG: rxy:Rxyl_2747 N-carbamoylsarcosine amidase; PFAM: Isochorismatase-like
YP_004334172.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: afw:Anae109_2774 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004334173.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nca:Noca_0030 major facilitator transporter
YP_004334174.1	KEGG: hvo:HVO_A0568 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase
YP_004334175.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: scl:sce2610  oxidoreductase
YP_004334176.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rfr:Rfer_4176 major facilitator transporter
YP_004334177.1	PFAM: ABC transporter permease; KEGG: nca:Noca_0101 inner-membrane translocator
YP_004334178.1	PFAM: ABC transporter-like; KEGG: nca:Noca_0100 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004334179.1	KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like
YP_004334180.1	KEGG: art:Arth_4066 dihydropyrimidinase; PFAM: Amidohydrolase 1
YP_004334181.1	KEGG: bph:Bphy_6346 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004334182.1	KEGG: bbr:BB0695  polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; Cupin 2, conserved barrel
YP_004334183.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: cti:RALTA_A2298  hydrolase; 3-oxoadipate enol-lactonase
YP_004334184.1	KEGG: pth:PTH_1335 citrate lyase beta subunit; PFAM: Aldehyde-lyase domain
YP_004334185.1	HAMAP: Dihydroxy-acid dehydratase; KEGG: rxy:Rxyl_1326 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004334186.1	PFAM: ABC transporter permease; KEGG: nca:Noca_0101 inner-membrane translocator
YP_004334187.1	PFAM: ABC transporter-like; KEGG: nca:Noca_0100 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004334188.1	KEGG: nca:Noca_0099 ABC-type sugar transport system periplasmic component-like
YP_004334189.1	PFAM: Isochorismatase-like; KEGG: cag:Cagg_3089 N-carbamoylsarcosine amidase
YP_004334190.1	KEGG: rxy:Rxyl_0365 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004334191.1	KEGG: bbr:BB0695  polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_004334192.1	KEGG: msm:MSMEG_6300 transcriptional regulator, GntR family protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004334193.1	KEGG: amd:AMED_5017 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004334194.1	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Acetaldehyde dehydrogenase; KEGG: amd:AMED_4219 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase, C-terminal; Semialdehyde dehydrogenase, NAD-binding
YP_004334195.1	TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; KEGG: amd:AMED_4220 4-hydroxy-2-ketovalerate aldolase; PFAM: Pyruvate carboxyltransferase; DmpG-like communication
YP_004334197.1	PFAM: Methyltransferase type 11; KEGG: mau:Micau_3737 methyltransferase
YP_004334198.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: mau:Micau_3745 alpha/beta hydrolase fold protein
YP_004334199.1	PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: mau:Micau_3744 peptidase M20
YP_004334200.1	KEGG: mau:Micau_3736 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
YP_004334201.1	KEGG: rxy:Rxyl_0364 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004334202.1	KEGG: mil:ML5_4663 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004334203.1	PFAM: Methyltransferase type 11; KEGG: mau:Micau_3737 methyltransferase
YP_004334204.1	KEGG: mil:ML5_4661 hypothetical protein
YP_004334205.1	KEGG: mil:ML5_4660 hypothetical protein
YP_004334206.1	KEGG: mil:ML5_4659 nmt1/thi5 like domain protein
YP_004334207.1	PFAM: ABC transporter-like; KEGG: mil:ML5_4658 abc transporter related protein; SMART: ATPase, AAA+ type, core
YP_004334208.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mil:ML5_4657 binding-protein-dependent transport systems inner membrane component
YP_004334209.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_4656 short-chain dehydrogenase/reductase sdr; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004334210.1	PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: mil:ML5_4655 peptidase M20
YP_004334211.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: mau:Micau_3745 alpha/beta hydrolase fold protein
YP_004334212.1	KEGG: mil:ML5_4653 peroxiredoxin, ohr subfamily; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein
YP_004334213.1	KEGG: mil:ML5_4651 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004334214.1	KEGG: mau:Micau_3749 formyl-CoA transferase; PFAM: CoA-transferase III
YP_004334215.1	PFAM:  cyclase; KEGG: nca:Noca_4084 cyclase protein
YP_004334216.1	PFAM: MmgE/PrpD; KEGG: mil:ML5_4648 MmgE/PrpD family protein
YP_004334217.1	KEGG: mil:ML5_4647 amidohydrolase; PFAM: Amidohydrolase 1
YP_004334218.1	PFAM: Aldehyde-lyase domain; KEGG: mau:Micau_3753 HpcH/HpaI aldolase
YP_004334219.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS
YP_004334220.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kra:Krad_4270 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004334221.1	PFAM: Nitroreductase-like; KEGG: has:Halsa_0298 nitroreductase
YP_004334223.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: sti:Sthe_0116 Rieske (2Fe-2S) domain protein
YP_004334224.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: tbi:Tbis_1970 Rieske (2Fe-2S) domain-containing protein
YP_004334225.1	KEGG: nda:Ndas_1607  F420-dependent enzyme; TIGRFAM: F420-binding domain, PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004334226.1	PFAM: Major facilitator superfamily MFS-1; KEGG: kfl:Kfla_4810 major facilitator superfamily MFS_1
YP_004334227.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rha:RHA1_ro00483 TetR family transcriptional regulator
YP_004334228.1	TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; KEGG: fre:Franean1_5222 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib
YP_004334229.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: sgr:SGR_1000  hydrolase
YP_004334230.1	KEGG: rop:ROP_28170 CaiB/BaiF family protein; PFAM: CoA-transferase III
YP_004334231.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: fre:Franean1_3648 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_004334232.1	PFAM: YkuD domain; KEGG: sen:SACE_4786  secreted protein
YP_004334234.1	PFAM: Monooxygenase, FAD-binding; KEGG: sen:SACE_3057 pentachlorophenol monooxygenase
YP_004334235.1	KEGG: amd:AMED_5254 beta-lactamase class B; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004334236.1	PFAM: Luciferase-like, subgroup; KEGG: hje:HacjB3_02270 luciferase-like monooxygenase
YP_004334237.1	KEGG: mbt:JTY_1088 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004334238.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nda:Ndas_2798 metabolite/H+ symporter, major facilitator superfamily (MFS)
YP_004334239.1	PFAM: Helix-turn-helix, HxlR type; KEGG: gbr:Gbro_0274 helix-turn-helix domain-containing protein
YP_004334240.1	PFAM: Polyketide cyclase/dehydrase; KEGG: sma:SAV_7402 cyclase/dehydrase
YP_004334241.1	PFAM: Luciferase-like, subgroup; KEGG: amd:AMED_7646 FMN-dependent monooxygenase
YP_004334242.1	KEGG: rop:ROP_04590 hypothetical protein
YP_004334243.1	PFAM: Protein of unknown function DUF421; KEGG: rop:ROP_04580 hypothetical membrane protein
YP_004334244.1	KEGG: nda:Ndas_4662 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain
YP_004334245.1	KEGG: amd:AMED_6557 hypothetical protein
YP_004334246.1	KEGG: cwo:Cwoe_0784 PGAP1 family protein
YP_004334247.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_3028 short-chain dehydrogenase/reductase sdr
YP_004334248.1	KEGG: ami:Amir_3121 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like
YP_004334249.1	KEGG: amd:AMED_4259 hypothetical protein
YP_004334250.1	PFAM: Serine/threonine-protein kinase-like domain; KEGG: amd:AMED_3149 serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004334251.1	KEGG: bwe:BcerKBAB4_5427 ATPase
YP_004334252.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rop:ROP_pKNR-00040  plasmid partitioning protein ParA
YP_004334254.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: amd:AMED_5888 anti-anti-sigma factor
YP_004334255.1	KEGG: amd:AMED_5889 GAF domain-containing serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; GAF; SMART: Protein phosphatase 2C-like; GAF
YP_004334256.1	KEGG: sen:SACE_0974 gas vesicle synthesis-like protein; HAMAP: Gas vesicle structural protein; PFAM: Gas vesicle protein GvpA
YP_004334257.1	PFAM: Domain of unknown function DUF336; KEGG: pzu:PHZ_c2132 hypothetical protein
YP_004334258.1	PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal; KEGG: sen:SACE_3137 repressor in the phenylacetic acid catabolism
YP_004334259.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: aci:ACIAD1426 salicylate esterase
YP_004334260.1	KEGG: xce:Xcel_0312 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004334261.1	KEGG: amd:AMED_3360 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004334262.1	KEGG: bgf:BC1003_4453 nitrilase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004334263.1	KEGG: nfa:nfa12450 salicylyl-CoA 5-hydroxylase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004334264.1	PFAM: Cupin 2, conserved barrel; KEGG: bgf:BC1003_4454 cupin 2 conserved barrel domain-containing protein
YP_004334265.1	KEGG: swi:Swit_0820 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004334266.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: apt:APA01_23730 Asp/Glu racemase
YP_004334267.1	PFAM: Thioesterase superfamily; KEGG: aau:AAur_4027 thioesterase protein
YP_004334268.1	KEGG: cai:Caci_6602 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004334271.1	KEGG: amd:AMED_3903 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal; ATPase, AAA+ type, core
YP_004334272.1	KEGG: amd:AMED_3903 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004334274.1	PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_3910 hypothetical protein
YP_004334275.1	PFAM: Diacylglycerol kinase, catalytic domain; KEGG: fal:FRAAL5417 hypothetical protein
YP_004334276.1	KEGG: sen:SACE_3236 integral membrane protein
YP_004334277.1	PFAM: RDD; KEGG: rop:ROP_35210 hypothetical membrane protein
YP_004334278.1	KEGG: nml:Namu_5192 hypothetical protein
YP_004334279.1	KEGG: mar:MAE_61320 hypothetical protein; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related
YP_004334280.1	SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: nml:Namu_4121 ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal
YP_004334281.1	KEGG: nml:Namu_3444 sulfate transporter; TIGRFAM: Sulphate anion transporter; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS
YP_004334282.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004334283.1	PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: nfa:nfa32860 hypothetical protein
YP_004334284.1	PFAM: Ion transport 2; KEGG: nml:Namu_2957 ion transport 2 domain-containing protein
YP_004334285.1	KEGG: cai:Caci_6592 hypothetical protein
YP_004334289.1	KEGG: nfa:nfa23360 hypothetical protein
YP_004334290.1	KEGG: amd:AMED_9148 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004334291.1	KEGG: nml:Namu_0789 hypothetical protein
YP_004334292.1	KEGG: sma:SAV_1927 integral membrane protein
YP_004334293.1	TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: mjl:Mjls_3183 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain
YP_004334294.1	PFAM: Protein of unknown function DUF2252; KEGG: sgr:SGR_6314 hypothetical protein
YP_004334295.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rop:ROP_33170  vanillate transporter
YP_004334296.1	KEGG: gob:Gobs_2395 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004334297.1	PFAM: 4Fe-4S binding domain; KEGG: ace:Acel_0499 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_004334298.1	HAMAP: Ferredoxin--NADP reductase, type 2; KEGG: mil:ML5_1109 fad-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004334299.1	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: nca:Noca_2142 hypothetical protein
YP_004334300.1	KEGG: ajs:Ajs_4284 hydratase/decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004334301.1	KEGG: nfa:nfa33170  transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004334302.1	KEGG: ppf:Pput_2898 ring hydroxylating dioxygenase, alpha subunit; PFAM: Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal; Rieske [2Fe-2S] iron-sulphur domain
YP_004334303.1	PFAM: Amidohydrolase 2; KEGG: bam:Bamb_4307 aminocarboxymuconate-semialdehyde decarboxylase
YP_004334304.1	PFAM: Aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: rop:ROP_46330 p-cumate dioxygenase small subunit
YP_004334305.1	KEGG: sen:SACE_3295 alpha/beta hydrolase
YP_004334306.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: rop:ROP_54160  4-oxalocrotonate tautomerase
YP_004334307.1	KEGG: tcu:Tcur_0537 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004334308.1	KEGG: amd:AMED_8623 2-keto-4-pentenoate hydratase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004334309.1	PFAM: Protein of unknown function DUF421; KEGG: aai:AARI_18290 hypothetical protein
YP_004334310.1	KEGG: cai:Caci_3623 hypothetical protein
YP_004334311.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_1039 transcriptional regulator, TetR family
YP_004334312.1	PFAM: Hedgehog, N-terminal signaling domain; KEGG: lpa:lpa_01031 hypothetical protein
YP_004334313.1	KEGG: cms:CMS_1406  phosphatase
YP_004334314.1	KEGG: bcv:Bcav_2807 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1
YP_004334315.1	SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Nitrate reductase, alpha subunit; KEGG: req:REQ_04230 nitrate reductase alpha subunit NarG; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain
YP_004334316.1	KEGG: gbr:Gbro_3700 nitrate reductase subunit beta; TIGRFAM: Nitrate reductase, beta subunit
YP_004334317.1	KEGG: sro:Sros_1922 nitrate reductase delta subunit protein; TIGRFAM: Nitrate reductase chaperone, NarJ; PFAM: DMSO/Nitrate reductase chaperone
YP_004334318.1	TIGRFAM: Nitrate reductase, gamma subunit; KEGG: nml:Namu_3672 respiratory nitrate reductase subunit gamma; PFAM: Nitrate reductase, gamma subunit
YP_004334319.1	PFAM: Transposase, IS4-like; KEGG: sen:SACE_4676 IS402-like transposase
YP_004334320.1	KEGG: cai:Caci_0200 Clp domain protein
YP_004334322.1	PFAM: Phosphoesterase; KEGG: amd:AMED_7590 phospholipase C
YP_004334324.1	KEGG: jan:Jann_2625 alpha/beta hydrolase; PFAM: Alpha/beta hydrolase fold-1
YP_004334325.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: pol:Bpro_5180 mandelate racemase/muconate lactonizing enzyme; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004334326.1	TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: pol:Bpro_0535 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal
YP_004334327.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_5182 TetR family transcriptional regulator
YP_004334329.1	KEGG: cai:Caci_3610 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004334330.1	KEGG: cwo:Cwoe_3840 hypothetical protein
YP_004334331.1	KEGG: nml:Namu_2946 9-cis-epoxycarotenoid dioxygenase; PFAM: Carotenoid oxygenase
YP_004334332.1	KEGG: mpi:Mpet_0814 hypothetical protein
YP_004334333.1	KEGG: sro:Sros_8709 ATPase-like protein; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal
YP_004334334.1	PFAM: Alcohol dehydrogenase, C-terminal; KEGG: rop:ROP_04760  oxidoreductase
YP_004334336.1	KEGG: amd:AMED_3505 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004334338.1	KEGG: amd:AMED_3893 phthalate 4,5-dioxygenase; PFAM: Molybdenum cofactor sulfurase, C-terminal; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin
YP_004334339.1	KEGG: req:REQ_13370 integral membrane protein
YP_004334340.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: efe:EFER_2276  hydrolase or acyltransferase
YP_004334341.1	KEGG: cai:Caci_3634 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Metal-dependent phosphohydrolase, HD subdomain; SMART: Transcription regulator LuxR, C-terminal; Metal-dependent phosphohydrolase, HD domain
YP_004334342.1	KEGG: fal:FRAAL1383 hypothetical protein
YP_004334343.1	KEGG: fal:FRAAL1382 hypothetical protein
YP_004334344.1	PFAM: Protein of unknown function DUF955; KEGG: sgr:SGR_7016t hypothetical protein
YP_004334345.1	KEGG: fra:Francci3_0884 hypothetical protein
YP_004334346.1	PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: rpx:Rpdx1_2116 UBA/ThiF-type NAD/FAD-binding protein
YP_004334347.1	KEGG: sjp:SJA_C1-20390 hypothetical protein
YP_004334348.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: nml:Namu_4764 transposase IS111A/IS1328/IS1533
YP_004334349.1	PFAM: Ureohydrolase; KEGG: pdi:BDI_1757 arginase
YP_004334354.1	PFAM: Protein of unknown function DUF81; KEGG: sgr:SGR_5215 hypothetical protein
YP_004334355.1	KEGG: sen:SACE_0570 molybdate ABC molybdate transporter substrate-binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, MerR
YP_004334356.1	PFAM: Bile acid:sodium symporter; KEGG: rop:ROP_00110 hypothetical membrane protein
YP_004334357.1	KEGG: nfa:nfa22980  transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004334358.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: nfa:nfa22970 hypothetical protein
YP_004334359.1	TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: mpa:MAP0231c hypothetical protein
YP_004334360.1	manually curated
YP_004334361.1	PFAM: Aminoglycoside phosphotransferase; KEGG: mmi:MMAR_1490 hypothetical protein
YP_004334362.1	PFAM: Nucleoside phosphorylase domain; KEGG: ote:Oter_4454 purine phosphorylase 1
YP_004334363.1	PFAM: Major facilitator superfamily MFS-1; KEGG: art:Arth_3829 major facilitator transporter
YP_004334364.1	KEGG: rop:ROP_pROB01-03280 hypothetical protein; PFAM: Beta-lactamase-like; Rhodanese-like; SMART: Beta-lactamase-like; Rhodanese-like
YP_004334365.1	KEGG: rha:RHA1_ro11220 ArsR family transcriptional regulator; PFAM: Rhodanese-like; HTH transcriptional regulator, ArsR; SMART: Rhodanese-like; HTH transcriptional regulator, ArsR
YP_004334366.1	PFAM: Methyltransferase type 11; KEGG: gob:Gobs_1427 type 11 methyltransferase
YP_004334367.1	PFAM: Major facilitator superfamily MFS-1; KEGG: stp:Strop_2968 major facilitator transporter
YP_004334368.1	KEGG: dmo:Dmoj_GI15099 GI15099 gene product from transcript GI15099-RA
YP_004334371.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: tcu:Tcur_0090 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004334372.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: mjl:Mjls_0685 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004334373.1	KEGG: rha:RHA1_ro07031 hypothetical protein; PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase
YP_004334374.1	PFAM: DSBA-like thioredoxin domain; KEGG: nfa:pnf1420 hypothetical protein
YP_004334375.1	PFAM: YkuD domain; KEGG: sen:SACE_4786  secreted protein
YP_004334377.1	PFAM: Peptidase M23; KEGG: rop:ROP_10830 peptidase M23 family protein
YP_004334380.1	PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: cai:Caci_1675 hypothetical protein
YP_004334381.1	PFAM: Copper resistance protein CopC, core; KEGG: sro:Sros_6847 conserved hypothetical protein of Cu resistance protein CopC-like protein
YP_004334382.1	KEGG: amd:AMED_3101  lysyl tRNA synthetase-like protein
YP_004334383.1	PFAM: Methyltransferase type 11; KEGG: rxy:Rxyl_3149 glycosyl transferase protein
YP_004334385.1	KEGG: dmo:Dmoj_GI15099 GI15099 gene product from transcript GI15099-RA
YP_004334386.1	TIGRFAM: Natural resistance-associated macrophage protein; HAMAP: Manganese transport protein MntH; KEGG: mil:ML5_2269 mn2+/fe2+ transporter, nramp family; PFAM: Natural resistance-associated macrophage protein
YP_004334387.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: rop:ROP_pROB01-02560  cadmium-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_004334388.1	KEGG: nda:Ndas_1791 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004334389.1	KEGG: mmi:MMAR_2144 hypothetical protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004334391.1	PFAM: TrwC relaxase; KEGG: kfl:Kfla_2190 TrwC relaxase
YP_004334392.1	KEGG: scb:SCAB_46911 mobile element transfer protein
YP_004334394.1	KEGG: kfl:Kfla_2188 hypothetical protein
YP_004334395.1	KEGG: kfl:Kfla_2184 type IV secretory pathway VirD4 protein-like protein
YP_004334399.1	TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: kfl:Kfla_2180 DNA binding domain protein, excisionase
YP_004334400.1	KEGG: sen:SACE_0474 hypothetical protein
YP_004334401.1	PFAM: NUDIX hydrolase domain; KEGG: ami:Amir_1278 NUDIX hydrolase
YP_004334402.1	KEGG: sro:Sros_8675  transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004334403.1	KEGG: sna:Snas_6234 regulatory protein GntR HTH; PFAM: Integrase, catalytic core, phage; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004334404.1	KEGG: rha:RHA1_ro07102 hypothetical protein
YP_004334405.1	KEGG: mil:ML5_4917 hypothetical protein
YP_004334406.1	KEGG: amd:AMED_7516 hypothetical protein
YP_004334407.1	PFAM: Polyketide cyclase/dehydrase; KEGG: sen:SACE_5694 hypothetical protein
YP_004334408.1	PFAM: TIM-barrel signal transduction protein, predicted; KEGG: sen:SACE_5695 hypothetical protein
YP_004334409.1	PFAM: Uncharacterised protein family UPF0261; KEGG: sen:SACE_5696 hypothetical protein
YP_004334411.1	KEGG: rha:RHA1_ro00971 hypothetical protein; manually curated; PFAM: Uncharacterised protein family YphA
YP_004334412.1	KEGG: mil:ML5_3758 glucokinase, rok family; PFAM: ROK
YP_004334413.1	KEGG: gbr:Gbro_2527 hypothetical protein
YP_004334414.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_5232 aminoglycoside 6'-N-acetyltransferase
YP_004334415.1	PFAM: Tetracycline transcriptional regulator, TetR, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_6464  transcriptional regulator, TetR family
YP_004334416.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sro:Sros_6465 transporter
YP_004334417.1	KEGG: fre:Franean1_5043 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: Domain of unknown function DUF1503
YP_004334419.1	TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; KEGG: amd:AMED_2498 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; ArgK protein
YP_004334420.1	KEGG: gob:Gobs_1789 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334421.1	KEGG: nml:Namu_1846 NAD(P)H dehydrogenase (quinone); HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold
YP_004334422.1	PFAM: Major facilitator superfamily MFS-1; KEGG: srt:Srot_0667 major facilitator superfamily protein
YP_004334423.1	PFAM: Periplasmic binding protein; KEGG: fra:Francci3_3150 hypothetical protein
YP_004334424.1	KEGG: fri:FraEuI1c_3494 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core
YP_004334425.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004334426.1	PFAM: Alanine racemase, N-terminal; KEGG: req:REQ_14970 hypothetical protein
YP_004334427.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rha:RHA1_ro06868 major facilitator transporter
YP_004334428.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: req:REQ_14960 TetR family transcriptional regulator
YP_004334429.1	TIGRFAM: FAD-linked oxidoreductase; KEGG: rha:RHA1_ro06029 L-gulonolactone oxidase; PFAM: D-arabinono-1,4-lactone oxidase; FAD linked oxidase, N-terminal
YP_004334430.1	PFAM: NUDIX hydrolase domain; KEGG: gob:Gobs_3663 NUDIX hydrolase
YP_004334431.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rer:RER_53490 lipase
YP_004334432.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL4881  transcriptional regulator
YP_004334433.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1773 Rieske (2Fe-2S) domain-containing protein
YP_004334434.1	KEGG: ami:Amir_6644 hypothetical protein
YP_004334435.1	PFAM: Methyltransferase type 11; KEGG: stp:Strop_0183 methyltransferase type 11
YP_004334436.1	KEGG: stp:Strop_0182 helix-turn-helix domain-containing protein; PFAM: Cupin 2, conserved barrel; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004334437.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_2833 transcriptional regulator, TetR family
YP_004334438.1	PFAM: Cytochrome P450; KEGG: sna:Snas_2832 cytochrome P450
YP_004334439.1	PFAM: Major facilitator superfamily MFS-1; KEGG: scb:SCAB_2561 hypothetical protein
YP_004334440.1	KEGG: rha:RHA1_ro03286 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004334441.1	KEGG: kfl:Kfla_1943 cytochrome P450; PFAM: Cytochrome P450
YP_004334442.1	KEGG: ace:Acel_0148 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004334443.1	PFAM: Luciferase-like, subgroup; KEGG: sgr:SGR_1577  monooxygenase
YP_004334444.1	KEGG: tcu:Tcur_2334 luciferase-like monooxygenase; TIGRFAM: Luciferase-like, F420-dependent oxidoreductase, Rv2161c, predicted; PFAM: Luciferase-like, subgroup
YP_004334445.1	KEGG: rha:RHA1_ro07107 hypothetical protein
YP_004334446.1	KEGG: cyj:Cyan7822_2221 monooxygenase FAD-binding protein; PFAM: Monooxygenase, FAD-binding
YP_004334447.1	KEGG: reu:Reut_B3601 salicylate 1-monooxygenase; PFAM: Monooxygenase, FAD-binding
YP_004334448.1	PFAM: Patatin/Phospholipase A2-related; KEGG: tbi:Tbis_1218 patatin
YP_004334449.1	KEGG: pap:PSPA7_3908 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type
YP_004334450.1	KEGG: rha:RHA1_ro02996 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type
YP_004334451.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dvl:Dvul_0299 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004334452.1	KEGG: cwo:Cwoe_4525 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334453.1	KEGG: kfl:Kfla_4001 hypothetical protein
YP_004334454.1	KEGG: amd:AMED_7632 alpha/beta hydrolase
YP_004334455.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_7633 TetR family transcriptional regulator
YP_004334456.1	KEGG: svi:Svir_13830 hypothetical protein
YP_004334457.1	KEGG: svi:Svir_13820 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 12
YP_004334458.1	KEGG: amd:AMED_6586 hypothetical protein
YP_004334459.1	KEGG: svi:Svir_13800 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain
YP_004334460.1	KEGG: art:Arth_0254 hypothetical protein
YP_004334463.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_1769 hypothetical protein
YP_004334464.1	KEGG: ami:Amir_1274 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004334465.1	KEGG: rop:ROP_50070 hypothetical protein
YP_004334466.1	SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; Uncharacterised protein family HDIG; KEGG: ami:Amir_1271 deoxyguanosinetriphosphate triphosphohydrolase; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain
YP_004334467.1	PFAM: Domain of unknown function DUF218; KEGG: amd:AMED_6599 hypothetical protein
YP_004334468.1	KEGG: cwo:Cwoe_4124 protein of unknown function DUF182
YP_004334470.1	KEGG: scb:SCAB_11071 hypothetical protein
YP_004334471.1	KEGG: ami:Amir_1937 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004334472.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: amd:AMED_6601 two-component system histidine kinase
YP_004334473.1	PFAM: ABC-2 type transporter; KEGG: nml:Namu_3004 ABC-2 type transporter
YP_004334474.1	PFAM: ABC transporter-like; KEGG: amd:AMED_6603 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004334475.1	KEGG: nda:Ndas_1941 protein of unknown function DUF21; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core
YP_004334476.1	PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; KEGG: nda:Ndas_1940 protein of unknown function DUF21
YP_004334477.1	KEGG: ami:Amir_1266 glycyl-tRNA synthetase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding
YP_004334478.1	KEGG: sro:Sros_7536  transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004334479.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: cwo:Cwoe_1479 activator of HSP90 ATPase 1 family protein
YP_004334480.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ami:Amir_1263 antibiotic biosynthesis monooxygenase
YP_004334481.1	KEGG: rer:RER_37090 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004334482.1	PFAM: Ferric-uptake regulator; KEGG: scb:SCAB_61951 metal uptake regulator
YP_004334483.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: nfa:nfa14530  undecaprenyl pyrophosphate synthetase
YP_004334484.1	KEGG: ami:Amir_1257 hypothetical protein
YP_004334485.1	KEGG: fri:FraEuI1c_3510 transcription activator effector binding protein
YP_004334487.1	TIGRFAM: Recombination protein O, RecO; HAMAP: Recombination protein O, RecO; KEGG: ami:Amir_1255 DNA repair protein RecO; PFAM: Recombination protein O, RecO
YP_004334488.1	PFAM: Protein of unknown function DUF2470; Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: scl:sce4194 hypothetical protein
YP_004334489.1	KEGG: gob:Gobs_1138 hypothetical protein
YP_004334490.1	TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: sen:SACE_1487 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2
YP_004334491.1	PFAM: FAD dependent oxidoreductase; KEGG: sgr:SGR_3901 hydroxyglutarate oxidase
YP_004334492.1	KEGG: ami:Amir_1252 cytidine deaminase
YP_004334493.1	KEGG: sen:SACE_1485 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Domain of unknown function DUF21; Transporter-associated domain; SMART: Cystathionine beta-synthase, core
YP_004334494.1	TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: amd:AMED_6624  metalloprotease; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted
YP_004334495.1	KEGG: amd:AMED_6625 phosphate starvation-inducible protein PhoH; manually curated; PFAM: PhoH-like protein
YP_004334496.1	PFAM: Isochorismatase-like; KEGG: bav:BAV2792 isochorismatase hydrolase
YP_004334497.1	KEGG: req:REQ_09650 thiamine pyrophosphate req_0uiring enzyme; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
YP_004334498.1	PFAM:  cyclase; KEGG: sro:Sros_3051 hypothetical protein
YP_004334499.1	KEGG: fri:FraEuI1c_1236 hypothetical protein
YP_004334500.1	KEGG: ami:Amir_1243 protein of unknown function DUF558; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E
YP_004334501.1	HAMAP: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain; KEGG: ami:Amir_1242 chaperone DnaJ domain protein; SMART: Heat shock protein DnaJ, N-terminal
YP_004334502.1	TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: amd:AMED_6629 heat-inducible transcriptional repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal
YP_004334503.1	KEGG: sen:SACE_3690 hypothetical protein
YP_004334504.1	KEGG: amd:AMED_1355 hypothetical protein
YP_004334505.1	KEGG: amd:AMED_1356 ATPase component of ABC-type multidrug transport system; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004334506.1	KEGG: amd:AMED_1357 hypothetical protein
YP_004334507.1	KEGG: amd:AMED_1358 lipase class 2
YP_004334508.1	TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: amd:AMED_6654 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB
YP_004334509.1	PFAM: Secretion protein HlyD; KEGG: fal:FRAAL6470 hypothetical protein
YP_004334510.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: fal:FRAAL6467 ABC transporter permease
YP_004334511.1	PFAM: ABC transporter-like; KEGG: fal:FRAAL6466 ABC-type transport systems, involved in lipoprotein release, ATPase components; SMART: ATPase, AAA+ type, core
YP_004334512.1	TIGRFAM: Secretion protein HlyD; KEGG: fal:FRAAL6465 hypothetical protein
YP_004334513.1	KEGG: amd:AMED_6656 ferredoxin-nitrite reductase; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_004334514.1	KEGG: amd:AMED_6657 hypothetical protein
YP_004334515.1	TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; KEGG: sen:SACE_1475 phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulphate reductase
YP_004334516.1	TIGRFAM: Sulphate adenylyltransferase, small subunit; KEGG: sen:SACE_1474 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase
YP_004334517.1	TIGRFAM: Sulphate adenylyltransferase, large subunit; KEGG: ami:Amir_1235 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2
YP_004334518.1	TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; KEGG: ami:Amir_1234 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein
YP_004334519.1	PFAM: ABC transporter-like; KEGG: ami:Amir_1233 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004334520.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: amd:AMED_1543 permease component of ABC-type sulfonate/nitrate/taurine transport system
YP_004334521.1	KEGG: sen:SACE_1472 cobalamin (vitamin B12) biosynthesis CbiX protein; manually curated; PFAM: Cobalamin (vitamin B12) biosynthesis CbiX
YP_004334523.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: sen:SACE_0056  ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004334524.1	KEGG: ami:Amir_6222 hypothetical protein
YP_004334525.1	KEGG: sma:SAV_6696 monooxygenase; PFAM: Luciferase-like, subgroup
YP_004334526.1	KEGG: nml:Namu_1206 hypothetical protein
YP_004334527.1	KEGG: amd:AMED_8411 aromatic compounds degradation protein PaaI; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_004334528.1	PFAM: Crotonase, core; KEGG: svi:Svir_12770 enoyl-CoA hydratase
YP_004334529.1	TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: tcu:Tcur_2648 hypothetical protein
YP_004334530.1	KEGG: nca:Noca_0781 silent information regulator protein Sir2; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2
YP_004334531.1	PFAM: Barstar (barnase inhibitor); KEGG: svi:Svir_12760 barstar (barnase inhibitor)
YP_004334532.1	PFAM: Guanine-specific ribonuclease N1/T1; KEGG: sen:SACE_1461 guanine-specific ribonuclease N1 and T1
YP_004334533.1	KEGG: amd:AMED_6669 hypothetical protein
YP_004334534.1	KEGG: svi:Svir_12740 Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_004334535.1	SMART: Translation elongation factor EFG/EF2, C-terminal; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; KEGG: mva:Mvan_3881 GTP-binding protein LepA; HAMAP: GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal
YP_004334536.1	KEGG: gob:Gobs_4815 hypothetical protein
YP_004334537.1	KEGG: sro:Sros_3208 hypothetical protein
YP_004334538.1	KEGG: sen:SACE_2650 integral membrane protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_004334539.1	KEGG: sen:SACE_2651 hypothetical protein
YP_004334540.1	PFAM: NLP/P60; KEGG: fra:Francci3_1696 NLP/P60
YP_004334541.1	KEGG: mil:ML5_2851 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004334542.1	PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; KEGG: sro:Sros_6198 signal transduction histidine kinase-like protein
YP_004334543.1	KEGG: nml:Namu_0595 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase-like protein
YP_004334544.1	KEGG: mlu:Mlut_22490 hypothetical protein
YP_004334545.1	PFAM: Crotonase, core; KEGG: amd:AMED_3863 enoyl-CoA hydratase
YP_004334546.1	PFAM: O-methyltransferase, family 3; KEGG: fri:FraEuI1c_4952 O-methyltransferase 3
YP_004334547.1	manually curated; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; KEGG: amd:AMED_0827 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004334548.1	PFAM: Protein of unknown function DUF2000; KEGG: fal:FRAAL2351 hypothetical protein
YP_004334549.1	KEGG: fri:FraEuI1c_1834 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004334550.1	KEGG: ami:Amir_1368 cytochrome-c oxidase
YP_004334551.1	KEGG: svi:Svir_10630 heme/copper-type cytochrome/quinol oxidases, subunit 2; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal
YP_004334552.1	TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: svi:Svir_10620 asparagine synthase (glutamine-hydrolysing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II
YP_004334553.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: stp:Strop_0264 GCN5-related N-acetyltransferase
YP_004334554.1	KEGG: ami:Amir_0660 stearoyl-CoA 9-desaturase; PFAM: Fatty acid desaturase, type 1
YP_004334555.1	TIGRFAM: Diacylglycerol/lipid kinase; PFAM: Diacylglycerol kinase, catalytic domain; KEGG: tcu:Tcur_1799 diacylglycerol kinase catalytic subunit; SMART: Diacylglycerol kinase, catalytic domain
YP_004334556.1	KEGG: tcu:Tcur_1798 alkylglycerone-phosphate synthase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004334557.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: stp:Strop_2581 regulatory protein, TetR
YP_004334558.1	KEGG: saq:Sare_2773 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004334559.1	KEGG: amd:AMED_2190 adenosine kinase; PFAM: Carbohydrate/purine kinase
YP_004334560.1	KEGG: svi:Svir_10610 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_004334561.1	TIGRFAM: Glycerate kinase; KEGG: mil:ML5_3725 glycerate kinase; PFAM: Glycerate kinase
YP_004334562.1	KEGG: ami:Amir_1363 hypothetical protein
YP_004334563.1	KEGG: sen:SACE_1651 cobinamide kinase / conamide phosphate guanylyltransferase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase
YP_004334564.1	KEGG: amd:AMED_2180 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like
YP_004334565.1	KEGG: sen:SACE_1649  cobalamin 5'-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase
YP_004334566.1	TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: nml:Namu_1869 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV
YP_004334567.1	PFAM: Amino acid permease domain; KEGG: stp:Strop_0237 amino acid permease-associated region
YP_004334568.1	HAMAP: Peptidase, M17, probable cytosol aminopeptidase; KEGG: sen:SACE_1642 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal
YP_004334569.1	KEGG: mva:Mvan_3578 hypothetical protein
YP_004334570.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: svi:Svir_10500 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004334571.1	KEGG: sen:SACE_1638 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004334572.1	PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: rop:ROP_08790 hypothetical protein
YP_004334573.1	PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: svi:Svir_10460 lipoate-protein ligase B
YP_004334574.1	KEGG: rer:RER_01610 hypothetical protein
YP_004334575.1	KEGG: amd:AMED_2163  monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; PFAM: Luciferase-like, subgroup
YP_004334576.1	KEGG: amd:AMED_1817 lipoic acid synthetase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB
YP_004334577.1	KEGG: rop:ROP_08820 hypothetical membrane protein
YP_004334578.1	PFAM: RDD; KEGG: mva:Mvan_3584 RDD domain-containing protein
YP_004334579.1	TIGRFAM: Glutamine synthetase type I; KEGG: ami:Amir_0925 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp
YP_004334580.1	KEGG: sro:Sros_2262 hypothetical protein
YP_004334581.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; Tetracycline transcriptional regulator, TetR, C-terminal; KEGG: ach:Achl_3639 transcriptional regulator, TetR family
YP_004334582.1	KEGG: pca:Pcar_2806 cold shock proteins; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004334583.1	KEGG: sen:SACE_6758 stearoyl-CoA 9-desaturase; PFAM: Fatty acid desaturase, type 1
YP_004334584.1	PFAM: Protein of unknown function DUF1211, TMEM175; KEGG: cwo:Cwoe_0449 protein of unknown function DUF1211
YP_004334585.1	KEGG: gob:Gobs_3434 hypothetical protein; HAMAP: Uncharacterised protein family UPF0061; PFAM: Uncharacterised protein family UPF0061
YP_004334586.1	TIGRFAM: Pyruvate, phosphate dikinase; KEGG: nml:Namu_4080 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme
YP_004334587.1	PFAM: Acriflavin resistance protein; KEGG: sro:Sros_4438 hypothetical protein
YP_004334588.1	KEGG: sro:Sros_4541 hypothetical protein
YP_004334589.1	KEGG: sro:Sros_6431 hypothetical protein
YP_004334590.1	manually curated; KEGG: sti:Sthe_1357 peptidase S9 prolyl oligopeptidase active site domain protein
YP_004334592.1	KEGG: amd:AMED_2939 hypothetical protein
YP_004334593.1	KEGG: nml:Namu_5275 hypothetical protein
YP_004334594.1	KEGG: amd:AMED_2353 succinate dehydrogenase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: Ferredoxin
YP_004334595.1	KEGG: kfl:Kfla_5537 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_004334596.1	KEGG: msp:Mspyr1_03630 hypothetical protein
YP_004334597.1	KEGG: tcu:Tcur_1121 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; PFAM: 4Fe-4S binding domain; Ferredoxin
YP_004334598.1	TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; KEGG: mil:ML5_2258 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_004334599.1	TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit; KEGG: saq:Sare_1707 succinate dehydrogenase/fumarate reductase cytochrome b subunit
YP_004334600.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nda:Ndas_3924 transcriptional regulator, LysR family
YP_004334601.1	KEGG: mau:Micau_1534 regulatory protein RecX; HAMAP: Regulatory protein RecX; PFAM: Regulatory protein RecX
YP_004334602.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: mjl:Mjls_2134 recombinase A; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA
YP_004334603.1	KEGG: nml:Namu_3995 hypothetical protein
YP_004334604.1	PFAM: CoA-transferase III; KEGG: tbi:Tbis_0993 L-carnitine dehydratase/bile acid-inducible protein F
YP_004334606.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_4955 transcriptional regulator, TetR family
YP_004334607.1	PFAM: Drug/metabolite transporter; KEGG: nda:Ndas_1398 protein of unknown function DUF6 transmembrane
YP_004334608.1	KEGG: ami:Amir_1413 DEAD/H associated domain protein; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal
YP_004334609.1	KEGG: req:REQ_00430 protein
YP_004334610.1	TIGRFAM: Acetoacetyl-CoA synthase; KEGG: amd:AMED_3268 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004334614.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_2881 transcriptional regulator, TetR family
YP_004334615.1	KEGG: req:REQ_47430 integral membrane protein; TIGRFAM: Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC
YP_004334617.1	KEGG: cai:Caci_0175 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004334618.1	KEGG: bcv:Bcav_3542 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain
YP_004334619.1	PFAM: ABC-2 type transporter; KEGG: bcv:Bcav_3543 ABC-2 type transporter
YP_004334620.1	PFAM: ABC transporter-like; KEGG: bcv:Bcav_3544 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004334621.1	PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: ami:Amir_5790 DNA glycosylase/AP lyase, H2TH DNA-binding; SMART: DNA glycosylase/AP lyase, catalytic domain
YP_004334622.1	PFAM: PspA/IM30; KEGG: amd:AMED_6280 phage shock protein A
YP_004334623.1	KEGG: sen:SACE_5879 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004334624.1	KEGG: rop:ROP_67400 phosphatidylglycerophosphate synthase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004334625.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: ami:Amir_5800 MiaB-like tRNA modifying enzyme YliG; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM
YP_004334626.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: nfa:nfa38590 N-acetylglutamate synthase
YP_004334627.1	SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: fre:Franean1_7200 AraC family transcriptional regulator
YP_004334628.1	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: svi:Svir_22350 predicted rRNA methylase SpoU family
YP_004334629.1	KEGG: sco:SCO2566 hypothetical protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like
YP_004334630.1	KEGG: sen:SACE_5889 cell division FtsK/SpoIIIE; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma
YP_004334631.1	PFAM: Protein of unknown function DUF2249; Cupin 2, conserved barrel; KEGG: nca:Noca_4862 hypothetical protein
YP_004334632.1	PFAM: 4Fe-4S binding domain; KEGG: mav:MAV_3500  ferredoxin FdxA
YP_004334633.1	PFAM: LexA, DNA-binding domain; KEGG: nca:Noca_4860 transcriptional regulator
YP_004334634.1	KEGG: rha:RHA1_ro08094 hypothetical protein
YP_004334635.1	PFAM: Cupin 2, conserved barrel; KEGG: nml:Namu_3635 MarR family transcriptional regulator
YP_004334636.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004334637.1	PFAM: Isocitrate lyase/phosphorylmutase; KEGG: aco:Amico_1318 carboxyvinyl-carboxyphosphonatephosphorylmutase
YP_004334638.1	KEGG: fri:FraEuI1c_4418 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004334639.1	KEGG: gbr:Gbro_2860 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004334640.1	KEGG: gbr:Gbro_2859 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase
YP_004334641.1	PFAM: Isochorismatase-like; KEGG: gbr:Gbro_2858 isochorismatase hydrolase
YP_004334643.1	PFAM: Amidase; KEGG: sna:Snas_3274 amidase
YP_004334644.1	PFAM: Amidase; KEGG: sti:Sthe_2520 amidase
YP_004334645.1	PFAM: Amidase; KEGG: htu:Htur_4354 amidase
YP_004334646.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: mdi:METDI1865  dipeptide transporter; periplasmic binding component of ABC superfamily (DppA-like)
YP_004334647.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: gtn:GTNG_0477 oligopeptide ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004334648.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: nfa:nfa1670  ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004334649.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120432  permease component of ABC transporter
YP_004334650.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: msm:MSMEG_1085 dipeptide transport system permease DppB
YP_004334651.1	KEGG: nfa:nfa24460  transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004334652.1	KEGG: ami:Amir_5806 beta-lactamase domain protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like
YP_004334653.1	PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: svi:Svir_25250 dihydrodipicolinate synthase
YP_004334654.1	TIGRFAM: Conserved hypothetical protein CHP03085; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: sen:SACE_5900 hypothetical protein
YP_004334655.1	PFAM: Thymidylate synthase ThyX; TIGRFAM: Thymidylate synthase ThyX; HAMAP: Thymidylate synthase ThyX; KEGG: sen:SACE_5902 FAD-dependent thymidylate synthase
YP_004334656.1	PFAM: Protein of unknown function DUF1778; KEGG: sen:SACE_5903 hypothetical protein
YP_004334657.1	KEGG: ami:Amir_5813 hypothetical protein
YP_004334658.1	PFAM: Protein of unknown function DUF1006; KEGG: amd:AMED_6308 hypothetical protein
YP_004334659.1	PFAM: Drug/metabolite transporter; KEGG: sro:Sros_0382 hypothetical protein
YP_004334660.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_6309 GCN5-related N-acetyltransferase
YP_004334661.1	PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase, bacterial/plant; KEGG: rop:ROP_67260 dihydrodipicolinate reductase
YP_004334662.1	PFAM: Protein of unknown function DUF456; KEGG: nfa:nfa53640 hypothetical protein
YP_004334663.1	KEGG: sen:SACE_5913  zinc protease; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal
YP_004334664.1	KEGG: ami:Amir_5823 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA-binding domain; TIGRFAM: Guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology
YP_004334665.1	KEGG: mjl:Mjls_2082 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15
YP_004334666.1	KEGG: ami:Amir_5826 hypothetical protein
YP_004334667.1	SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: req:REQ_19270 riboflavin kinase; PFAM: FAD synthetase; Riboflavin kinase
YP_004334668.1	TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: ami:Amir_5828 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; tRNA pseudouridine synthase II, TruB, subfamily 2, C-terminal
YP_004334669.1	KEGG: amd:AMED_6327 DNA-damage-inducible protein F; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein
YP_004334670.1	KEGG: svi:Svir_19850 phospholipid N-methyltransferase
YP_004334671.1	PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; KEGG: ami:Amir_5831 phosphoesterase RecJ domain protein
YP_004334672.1	TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: svi:Svir_14590 ribosome-binding factor A; PFAM: Ribosome-binding factor A
YP_004334673.1	PFAM: Protein of unknown function DUF503; KEGG: sen:SACE_5925 hypothetical protein
YP_004334674.1	TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; KEGG: ami:Amir_5834 translation initiation factor IF-2; SMART: Ras small GTPase, Ras type
YP_004334675.1	TIGRFAM: Transcription termination factor NusA; PFAM: Transcription factor NusA, N-terminal; KEGG: ami:Amir_5836 transcription elongation factor NusA; SMART: RNA-binding domain, S1; K Homology
YP_004334676.1	KEGG: svi:Svir_14540 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP
YP_004334677.1	KEGG: rer:RER_26280 hypothetical protein
YP_004334678.1	KEGG: amd:AMED_6342 hypothetical protein
YP_004334679.1	PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: ami:Amir_5841 aminotransferase class V
YP_004334680.1	KEGG: sen:SACE_5933 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047
YP_004334681.1	PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; KEGG: scb:SCAB_53331 hypothetical protein
YP_004334682.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding; TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; KEGG: svi:Svir_10160 prolyl-tRNA synthetase
YP_004334683.1	KEGG: amd:AMED_5707 cold shock protein CspA; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004334684.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: kfl:Kfla_4294 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
YP_004334685.1	KEGG: tfu:Tfu_2822 homoserine O-acetyltransferase; manually curated; TIGRFAM: Homoserine acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; HAMAP: Homoserine acetyltransferase
YP_004334686.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: amd:AMED_7929 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004334687.1	PFAM: Uncharacterised protein family UPF0246; KEGG: mjl:Mjls_2726 hypothetical protein
YP_004334688.1	PFAM: Polysaccharide deacetylase; KEGG: amd:AMED_3934 hypothetical protein
YP_004334689.1	KEGG: amd:AMED_2059 RIO kinase 1; PFAM: RIO-like kinase; SMART: RIO kinase
YP_004334690.1	KEGG: ami:Amir_5853 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004334691.1	KEGG: ace:Acel_1446 cysteine--tRNA ligase; PFAM: Cysteinyl-tRNA synthetase, class Ia
YP_004334692.1	KEGG: cai:Caci_7191 hypothetical protein
YP_004334693.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ami:Amir_5865 GCN5-related N-acetyltransferase
YP_004334694.1	TIGRFAM: Mycothione reductase; KEGG: rha:RHA1_ro06610 mycothione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004334695.1	KEGG: ami:Amir_0660 stearoyl-CoA 9-desaturase; PFAM: Fatty acid desaturase, type 1
YP_004334696.1	KEGG: amd:AMED_6935 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004334697.1	KEGG: sen:SACE_6750 hypothetical protein
YP_004334698.1	PFAM: Amine oxidase; KEGG: sgr:SGR_5877  amine oxidoreductase
YP_004334699.1	PFAM: Protein of unknown function DUF1365; KEGG: rer:RER_23220 hypothetical protein
YP_004334700.1	KEGG: amd:AMED_2870 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase
YP_004334701.1	KEGG: amd:AMED_2950 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase
YP_004334702.1	PFAM: Protein of unknown function DUF1295; KEGG: cai:Caci_4267 protein of unknown function DUF1295
YP_004334703.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: tcu:Tcur_1893 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004334704.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: nda:Ndas_0741 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
YP_004334705.1	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: sen:SACE_5989 methionine aminopeptidase; PFAM: Peptidase M24, structural domain
YP_004334706.1	KEGG: bcv:Bcav_2730  transmembrane protein
YP_004334707.1	PFAM: Penicillin-binding protein, transpeptidase; NTF2-like N-terminal transpeptidase; KEGG: amd:AMED_2045 penicillin-binding protein, transpeptidase
YP_004334708.1	KEGG: ami:Amir_5887 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004334709.1	TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: sen:SACE_5992 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
YP_004334710.1	KEGG: fri:FraEuI1c_2951 hypothetical protein
YP_004334711.1	PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: ami:Amir_5889 peptidase M50
YP_004334712.1	PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: ami:Amir_5890 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_004334713.1	KEGG: amd:AMED_2035 hypothetical protein
YP_004334714.1	KEGG: rop:ROP_52850 hypothetical protein; manually curated; PFAM: DNA primase, small subunit
YP_004334715.1	TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: gob:Gobs_1595 hypothetical protein
YP_004334716.1	KEGG: kfl:Kfla_5255 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334717.1	PFAM: Uracil-DNA glycosylase-like; KEGG: tcu:Tcur_1752 uracil-DNA glycosylase superfamily
YP_004334718.1	PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: mpa:MAP0341 ATP-dependent DNA ligase
YP_004334719.1	TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: gbr:Gbro_2114 radical SAM enzyme, Cfr family; PFAM: Radical SAM
YP_004334720.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: bcv:Bcav_4163 pyridoxamine 5'-phosphate oxidase-related protein FMN-binding
YP_004334721.1	KEGG: vcn:VOLCADRAFT_33984 hypothetical protein
YP_004334722.1	KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA
YP_004334723.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: tcu:Tcur_2193 Rieske (2Fe-2S) domain-containing protein
YP_004334724.1	PFAM: Methyltransferase type 11; KEGG: ami:Amir_5905 methyltransferase type 11
YP_004334725.1	PFAM: Phosphatidate cytidylyltransferase; KEGG: svi:Svir_09930 CDP-diglyceride synthetase
YP_004334726.1	TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: svi:Svir_09920 ribosome recycling factor; PFAM: Ribosome recycling factor
YP_004334727.1	KEGG: ami:Amir_5909 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase
YP_004334728.1	TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Translation elongation factor EFTs/EF1B; KEGG: gbr:Gbro_2105 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal
YP_004334729.1	KEGG: ami:Amir_5911 ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2
YP_004334730.1	PFAM: Peptidase M23; KEGG: nfa:nfa41330  peptidase
YP_004334731.1	KEGG: svi:Svir_09870 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4
YP_004334732.1	KEGG: mjl:Mjls_1970 site-specific tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage
YP_004334733.1	KEGG: mtu:Rv2896c hypothetical protein; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A
YP_004334734.1	TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: req:REQ_18110 magnesium chelatase; SMART: ATPase, AAA+ type, core
YP_004334735.1	TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: svi:Svir_09830 conserved hypothetical protein TIGR00252; PFAM: Uncharacterised protein family UPF0102
YP_004334736.1	PFAM: Protein of unknown function DUF2469; KEGG: ami:Amir_5918 hypothetical protein
YP_004334737.1	KEGG: ami:Amir_5919 ribonuclease H; PFAM: Ribonuclease HII/HIII
YP_004334738.1	TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: amd:AMED_5515 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region
YP_004334739.1	TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: sen:SACE_6049 50S ribosomal protein L19; PFAM: Ribosomal protein L19
YP_004334740.1	PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: amd:AMED_1962 tRNA (guanine-N1-)-methyltransferase
YP_004334741.1	PFAM: MgtC/SapB transporter; KEGG: sen:SACE_3790  Mg2+ transporter-C (MgtC) family protein
YP_004334742.1	PFAM: Clp, N-terminal; KEGG: cai:Caci_7209 Clp domain protein
YP_004334743.1	KEGG: nfa:nfa51500 hypothetical protein
YP_004334744.1	TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: svi:Svir_09770 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel
YP_004334745.1	HAMAP: Uncharacterised protein family UPF0109, bacterial; KEGG: ami:Amir_5925 hypothetical protein
YP_004334746.1	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: amd:AMED_1958 small subunit ribosomal protein S16; PFAM: Ribosomal protein S16
YP_004334747.1	PFAM: Abortive infection protein; KEGG: mbt:JTY_0677  integral membrane protein
YP_004334748.1	PFAM: Amidohydrolase 1; KEGG: ami:Amir_5929 amidohydrolase
YP_004334749.1	TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: svi:Svir_09710 signal recognition particle subunit FFH/SRP54 (SRP54); SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core
YP_004334751.1	KEGG: mmi:MMAR_1788 nitrogen regulatory protein P-II GlnB; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII
YP_004334752.1	SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Protein-PII uridylyltransferase; KEGG: ami:Amir_5932 PII uridylyl-transferase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Amino acid-binding ACT
YP_004334753.1	KEGG: mav:MAV_3774 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII
YP_004334754.1	KEGG: gbr:Gbro_2079 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII
YP_004334755.1	KEGG: rha:RHA1_ro06530 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter
YP_004334756.1	TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: svi:Svir_09610 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core
YP_004334757.1	TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; SMCs flexible hinge; KEGG: svi:Svir_09570 condensin subunit Smc; SMART: SMCs flexible hinge
YP_004334758.1	manually curated; HAMAP: Acylphosphatase; KEGG: sro:Sros_7993 acylphosphatase-like protein; PFAM: Acylphosphatase-like
YP_004334759.1	KEGG: ami:Amir_5005 SCP-like extracellular; manually curated; PFAM: CAP domain
YP_004334760.1	KEGG: ami:Amir_5960 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004334761.1	KEGG: cmi:CMM_1697 Mg2+/Co2+ transporter; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like
YP_004334762.1	KEGG: amd:AMED_1798 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain
YP_004334763.1	KEGG: ami:Amir_5964 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding
YP_004334764.1	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: ami:Amir_5965 50S ribosomal protein L32; PFAM: Ribosomal protein L32p
YP_004334765.1	PFAM: Protein of unknown function DUF177; KEGG: amd:AMED_1794 hypothetical protein
YP_004334766.1	KEGG: sen:SACE_6104 large Ala/Glu-rich protein
YP_004334767.1	PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: svi:Svir_09450 phosphopantetheine adenylyltransferase
YP_004334768.1	KEGG: amd:AMED_1788 methyltransferase; TIGRFAM: RNA methyltransferase, RsmD; PFAM: RNA methyltransferase, RsmD
YP_004334769.1	SMART: Biotin carboxylase, C-terminal; TIGRFAM: Pyruvate carboxylase; KEGG: sco:SCO0546 pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Pyruvate carboxyltransferase; Carboxylase, conserved domain; Biotin/lipoyl attachment
YP_004334770.1	KEGG: gbr:Gbro_2781 hypothetical protein
YP_004334771.1	TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: sen:SACE_6119 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004334772.1	KEGG: ami:Amir_5978 Dak phosphatase; TIGRFAM: DAK2 domain-containing protein YloV; PFAM: Dak phosphatase
YP_004334773.1	TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: nfa:nfa41960 50S ribosomal protein L28; PFAM: Ribosomal protein L28
YP_004334774.1	TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: tcu:Tcur_3819 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like
YP_004334775.1	KEGG: srt:Srot_0993 transferase
YP_004334776.1	KEGG: sen:SACE_6539 multisubunit Na+:H+ antiporter MnhG subunit; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit
YP_004334777.1	KEGG: fre:Franean1_5210 hypothetical protein
YP_004334778.1	KEGG: sen:SACE_6541 cation antiporter
YP_004334779.1	KEGG: sen:SACE_6542  monovalent cation/H+ antiporter subunit D; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004334780.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: svi:Svir_14760 multisubunit Na+/H+ antiporter, MnhC subunit
YP_004334781.1	KEGG: dvm:DvMF_2183 malate synthase G; PFAM: Malate synthase
YP_004334782.1	KEGG: svi:Svir_02320 FAD/FMN-dependent dehydrogenase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004334783.1	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: svi:Svir_02310 FAD/FMN-dependent dehydrogenase
YP_004334784.1	PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: svi:Svir_02300 Fe-S oxidoreductase
YP_004334785.1	KEGG: rha:RHA1_ro06730 hypothetical protein
YP_004334786.1	KEGG: sen:SACE_3778 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004334787.1	KEGG: svi:Svir_02320 FAD/FMN-dependent dehydrogenase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004334788.1	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: svi:Svir_02310 FAD/FMN-dependent dehydrogenase
YP_004334789.1	PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: svi:Svir_02300 Fe-S oxidoreductase
YP_004334790.1	TIGRFAM: Thiamine-monophosphate kinase; KEGG: ami:Amir_5985 thiamine-monophosphate kinase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal
YP_004334791.1	PFAM: Transcription regulator AsnC-type, C-terminal; KEGG: nml:Namu_1487 AsnC family transcriptional regulator
YP_004334792.1	KEGG: nfa:nfa42020 hypothetical protein
YP_004334793.1	PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: req:REQ_31280 D-alanine-D-alanine ligase
YP_004334794.1	KEGG: bxe:Bxe_A2769  acetyl-CoA synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004334795.1	KEGG: bts:Btus_1727 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004334796.1	PFAM: Isochorismatase-like; KEGG: gbr:Gbro_2858 isochorismatase hydrolase
YP_004334797.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: gob:Gobs_4542 hypothetical protein
YP_004334798.1	KEGG: sen:SACE_1333 prolyl oligopeptidase
YP_004334799.1	PFAM: Mechanosensitive ion channel MscS; KEGG: sen:SACE_1332 MscS mechanosensitive ion channel
YP_004334800.1	PFAM: Globin, truncated bacterial-like; KEGG: amd:AMED_6822 oxygen-binding heme protein
YP_004334801.1	KEGG: ami:Amir_1134 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain
YP_004334802.1	KEGG: ami:Amir_1133 hypothetical protein
YP_004334803.1	PFAM: Thioesterase superfamily; KEGG: sna:Snas_4640 thioesterase superfamily protein
YP_004334804.1	PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: sen:SACE_1325 NAD-specific glutamate dehydrogenase
YP_004334805.1	KEGG: tpr:Tpau_0881 hypothetical protein
YP_004334806.1	TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: mav:MAV_1695  ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004334807.1	KEGG: req:REQ_30370 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding
YP_004334808.1	PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; Copper resistance D; KEGG: sen:SACE_1321 copper resistance transporter
YP_004334809.1	KEGG: sro:Sros_0115 phosphoprotein phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like
YP_004334810.1	PFAM: DNA methylase, adenine-specific; KEGG: sen:SACE_6614  type I restriction system adenine methylase
YP_004334811.1	KEGG: sna:Snas_6234 regulatory protein GntR HTH; PFAM: Integrase, catalytic core, phage; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004334812.1	PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase
YP_004334813.1	KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004334815.1	PFAM: ABC transporter-like; KEGG: cai:Caci_5722 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004334816.1	KEGG: amd:AMED_6504 ABC transport system permease
YP_004334817.1	PFAM: Protein of unknown function DUF347; KEGG: cai:Caci_8898 protein of unknown function DUF347
YP_004334818.1	KEGG: sen:SACE_4320 integral membrane protein
YP_004334819.1	KEGG: nca:Noca_1551 hypothetical protein
YP_004334820.1	PFAM: Protein of unknown function DUF1707; KEGG: fal:FRAAL2404 hypothetical protein
YP_004334821.1	KEGG: sma:SAV_4158 two-component system sensor kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004334822.1	KEGG: tfu:Tfu_0343 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004334823.1	PFAM: SNARE associated Golgi protein; KEGG: amd:AMED_6495 DedA-like membrane protein
YP_004334824.1	KEGG: afo:Afer_0701 hypothetical protein
YP_004334825.1	KEGG: nml:Namu_1164 PA-phosphatase-like phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004334826.1	KEGG: tgr:Tgr7_2376 hypothetical protein
YP_004334828.1	KEGG: gob:Gobs_0770 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004334829.1	KEGG: amd:AMED_6941 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004334830.1	KEGG: fri:FraEuI1c_2985 Dyp-type peroxidase; TIGRFAM: Tat-translocated enzyme; Dyp-type peroxidase; PFAM: Dyp-type peroxidase
YP_004334831.1	PFAM: Peptidase M75, Imelysin; KEGG: fri:FraEuI1c_2986 peptidase M75, imelysin
YP_004334832.1	PFAM: Iron permease FTR1; KEGG: fri:FraEuI1c_2987 iron permease FTR1
YP_004334833.1	PFAM: Penicillinase repressor; KEGG: fre:Franean1_7010 CopY family transcriptional regulator
YP_004334834.1	PFAM: Peptidase M48; KEGG: fri:FraEuI1c_2989 peptidase M48 Ste24p
YP_004334835.1	KEGG: mgi:Mflv_1496 hypothetical protein
YP_004334836.1	KEGG: mmi:MMAR_1549 hypothetical protein
YP_004334837.1	TIGRFAM: Acetate kinase; KEGG: fal:FRAAL5741 acetate kinase A (propionate kinase 2); PFAM: Acetate/butyrate kinase
YP_004334838.1	HAMAP: phosphoketolase; KEGG: mkm:Mkms_2837  phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal
YP_004334839.1	KEGG: mau:Micau_2779 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Transport-associated; UspA; SMART: Cystathionine beta-synthase, core
YP_004334840.1	PFAM: UspA; KEGG: sen:SACE_2455 universal stress protein
YP_004334841.1	PFAM: UspA; KEGG: mil:ML5_4708 UspA domain-containing protein
YP_004334842.1	PFAM: UspA; KEGG: mil:ML5_4708 UspA domain-containing protein
YP_004334843.1	SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: scb:SCAB_10521 oxidoreductase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_004334844.1	KEGG: sro:Sros_4837 gluconate kinase
YP_004334845.1	KEGG: nml:Namu_2400 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004334847.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mjl:Mjls_1106 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; Haemerythrin/HHE cation-binding motif
YP_004334849.1	KEGG: kra:Krad_0433  PAS/PAC sensor protein; PFAM: PAS fold-4; SMART: PAS
YP_004334850.1	KEGG: xce:Xcel_1117 hypothetical protein
YP_004334851.1	PFAM: Integrase, catalytic core; KEGG: mtb:TBMG_03231 transposase
YP_004334852.1	PFAM: Integrase, catalytic core, phage; KEGG: msp:Mspyr1_54040 site-specific recombinase XerD
YP_004334853.1	KEGG: msp:Mspyr1_54050 transcriptional regulator
YP_004334854.1	KEGG: rer:pREL1_0202 hypothetical protein; manually curated; PFAM: Integrase, N-terminal SAM-like, phage
YP_004334855.1	KEGG: rer:pREL1_0203  transposition helper protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004334856.1	PFAM: Integrase, catalytic core; KEGG: tpr:Tpau_1024 integrase catalytic region
YP_004334858.1	PFAM: Cell shape determining protein MreB/Mrl; KEGG: rop:ROP_03780 rod shape-determining protein MreB
YP_004334859.1	KEGG: fri:FraEuI1c_6395 hypothetical protein
YP_004334860.1	KEGG: fri:FraEuI1c_3801 hypothetical protein
YP_004334861.1	PFAM: Polysaccharide deacetylase; KEGG: fri:FraEuI1c_3800 polysaccharide deacetylase
YP_004334862.1	PFAM: Monogalactosyldiacylglycerol synthase; KEGG: saq:Sare_0629 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like protein
YP_004334863.1	KEGG: sro:Sros_5318 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SNARE associated Golgi protein; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004334864.1	KEGG: nca:Noca_1553 undecaprenyl-diphosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004334865.1	PFAM: Penicillinase repressor; KEGG: sco:SCO6358 hypothetical protein
YP_004334866.1	PFAM: Peptidase M48; KEGG: cai:Caci_9019 peptidase M48 Ste24p
YP_004334867.1	PFAM: Penicillin-binding protein, transpeptidase; Cell cycle protein; Penicillin-binding protein, dimerisation domain; KEGG: req:REQ_10960 peptidoglycan synthesis protein
YP_004334868.1	KEGG: req:REQ_10950 membrane protein
YP_004334869.1	KEGG: cma:Cmaq_1259 fructose-bisphosphate aldolase
YP_004334870.1	PFAM: Protein of unknown function DUF1876; KEGG: sen:SACE_2426 hypothetical protein
YP_004334871.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gvi:gll0133 hypothetical protein
YP_004334872.1	PFAM: Domain of unknown function DUF125, transmembrane; KEGG: rha:RHA1_ro04892 hypothetical protein
YP_004334873.1	KEGG: kfl:Kfla_3387 hypothetical protein
YP_004334875.1	KEGG: rha:RHA1_ro10169 acylamide amidohydrolase
YP_004334876.1	KEGG: scb:SCAB_84441 MarR family regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334877.1	KEGG: sen:SACE_0923 hypothetical protein
YP_004334878.1	KEGG: fra:Francci3_2241 hypothetical protein
YP_004334879.1	TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, KEGG: krh:KRH_22990  regulatory protein; SMART: Regulatory protein, FmdB
YP_004334880.1	KEGG: sen:SACE_1932 formamidase; PFAM: Acetamidase/Formamidase
YP_004334881.1	PFAM: Integrase, catalytic core; KEGG: sen:SACE_5133 IS630 family transposase
YP_004334882.1	KEGG: nml:Namu_0765 LuxR family two component transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004334884.1	PFAM: FhuF/siderophore biosynthesis protein; KEGG: req:REQ_32280 protein
YP_004334886.1	KEGG: rha:RHA1_ro10171 hypothetical protein
YP_004334888.1	KEGG: rha:RHA1_ro10172 hypothetical protein
YP_004334889.1	KEGG: rha:RHA1_ro10171 hypothetical protein
YP_004334890.1	KEGG: rha:RHA1_ro10170 hypothetical protein
YP_004334892.1	KEGG: cai:Caci_3304 Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, YjcE-like, bacteria; PFAM: Cation/H+ exchanger
YP_004334893.1	KEGG: aai:AARI_22160 hypothetical protein
YP_004334894.1	KEGG: svi:Svir_15360 hypothetical protein
YP_004334895.1	PFAM: Monooxygenase, FAD-binding; KEGG: amd:AMED_4862 FAD-dependent oxidoreductase
YP_004334896.1	PFAM: Rhodanese-like; KEGG: cfl:Cfla_0454 rhodanese domain protein; SMART: Rhodanese-like
YP_004334897.1	KEGG: scb:SCAB_86601 esterase LipW
YP_004334898.1	KEGG: nml:Namu_5170 transcriptional regulator CdaR
YP_004334899.1	manually curated; PFAM: Beta-lactamase-like; KEGG: sro:Sros_3006 metal-dependent hydrolase; SMART: Beta-lactamase-like
YP_004334900.1	PFAM: Crotonase, core; KEGG: amd:AMED_7205 enoyl-CoA hydratase/isomerase
YP_004334901.1	KEGG: rop:ROP_70910 hypothetical protein
YP_004334902.1	PFAM: Amidohydrolase 3; KEGG: rop:ROP_70920 hypothetical protein
YP_004334903.1	KEGG: fal:FRAAL1950  O-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (O-succinylbenzoyl-CoA synthetase); PFAM: AMP-dependent synthetase/ligase
YP_004334904.1	KEGG: rop:ROP_71030 hypothetical protein
YP_004334905.1	PFAM: Alpha/beta hydrolase fold-1; Glycosyl transferase, family 28, C-terminal; KEGG: bcv:Bcav_2695 alpha/beta hydrolase fold protein
YP_004334906.1	PFAM: Methyltransferase type 12; KEGG: bcv:Bcav_2696 methyltransferase type 12
YP_004334907.1	KEGG: mva:Mvan_3871 regulatory protein, LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004334908.1	KEGG: cwo:Cwoe_4409 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004334909.1	PFAM: Glutamine amidotransferase, class-II; KEGG: fal:FRAAL1888  glutamine amidotransferase
YP_004334910.1	PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: fri:FraEuI1c_5163 glutamate synthase alpha subunit domain protein
YP_004334911.1	KEGG: msm:MSMEG_6263 glutamate synthase protein; PFAM: Glutamate synthase, central-C
YP_004334912.1	TIGRFAM: Glutamine synthetase, type III; KEGG: msm:MSMEG_6260 glutamine synthetase, type III; PFAM: Glutamine synthetase, catalytic domain
YP_004334913.1	PFAM: FAD dependent oxidoreductase; KEGG: mei:Msip34_2428 FAD dependent oxidoreductase
YP_004334914.1	PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: sen:SACE_4493 sarcosine oxidase, delta chain
YP_004334915.1	KEGG: bvi:Bcep1808_7300 sarcosine oxidase alpha subunit family protein; PFAM: Glycine cleavage T-protein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Glycine cleavage T-protein, C-terminal barrel
YP_004334916.1	PFAM: Sarcosine oxidase, gamma subunit; KEGG: sen:SACE_4491 sarcosine oxidase gamma subunit
YP_004334917.1	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: mbt:JTY_2980 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT
YP_004334918.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: cwo:Cwoe_3588 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004334919.1	TIGRFAM: Thiolase; KEGG: amd:AMED_4613 acetyl-CoA acyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004334920.1	KEGG: fal:FRAAL4450  monomeric sarcosine oxidase (MSOX); PFAM: FAD dependent oxidoreductase
YP_004334921.1	KEGG: rop:ROP_19400  oxygenase
YP_004334923.1	TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: rha:RHA1_ro02225 nitrilotriacetate monoxygenase, component A
YP_004334924.1	KEGG: sma:SAV_7208 ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004334925.1	PFAM: ABC transporter-like; KEGG: sma:SAV_7209 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004334926.1	KEGG: sma:SAV_7210 ABC transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004334927.1	PFAM: FR47-like; KEGG: fri:FraEuI1c_3113 FR47 domain protein
YP_004334928.1	PFAM: Protein of unknown function DUF1684; KEGG: rop:ROP_19320 hypothetical protein
YP_004334929.1	KEGG: tbi:Tbis_1595 luciferase-like monooxygenase; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like, subgroup
YP_004334930.1	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: fri:FraEuI1c_3109 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004334932.1	KEGG: sma:SAV_3609 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334933.1	KEGG: scb:SCAB_20541 lipase
YP_004334934.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: bbt:BBta_2632  fumarylacetoacetate (FAA) hydrolase
YP_004334935.1	KEGG: bbt:BBta_2631  formyl-coenzyme A transferase, L-carnitine dehydratase; PFAM: CoA-transferase III
YP_004334936.1	PFAM: Crotonase, core; KEGG: bge:BC1002_4061 enoyl-CoA hydratase/isomerase
YP_004334937.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_3360 transcriptional regulator
YP_004334938.1	PFAM: Major facilitator superfamily MFS-1; Collagen-binding surface protein Cna-like, B-type domain; KEGG: cai:Caci_4425 drug resistance transporter, EmrB/QacA subfamily
YP_004334939.1	PFAM: Helix-turn-helix, HxlR type; KEGG: msm:MSMEG_3013  transcriptional regulator family protein
YP_004334940.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_1863 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004334941.1	KEGG: ccs:CCNA_01339 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004334942.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: fri:FraEuI1c_1865 activator of HSP90 ATPase 1 family protein
YP_004334943.1	KEGG: kfl:Kfla_4633 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain
YP_004334946.1	KEGG: nml:Namu_2934 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; 4Fe-4S binding domain; Cysteine-rich domain
YP_004334950.1	PFAM: Lipase, secreted; KEGG: nml:Namu_3126 secretory lipase
YP_004334951.1	KEGG: nml:Namu_5169 alpha/beta hydrolase fold-3 domain-containing protein
YP_004334952.1	KEGG: scb:SCAB_0611 hypothetical protein
YP_004334953.1	KEGG: cwo:Cwoe_1186 hypothetical protein
YP_004334954.1	KEGG: amd:AMED_2049 hypothetical protein
YP_004334955.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Daunorubicin resistance ABC transporter ATP-binding subunit; KEGG: sma:SAV_5961 ABC transporter ATP-binding protein; PFAM: ABC transporter-like
YP_004334956.1	PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro02603 multidrug ABC transporter permease
YP_004334957.1	KEGG: kfl:Kfla_0016 hypothetical protein
YP_004334958.1	KEGG: nml:Namu_5035 osmosensitive K+ channel histidine kinase-like protein
YP_004334959.1	KEGG: rop:ROP_49960 CaiB/BaiF family protein; PFAM: CoA-transferase III
YP_004334960.1	KEGG: amd:AMED_4854 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal
YP_004334961.1	PFAM: Methyltransferase type 11; KEGG: fal:FRAAL5015  methyltransferase
YP_004334962.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_1865 hypothetical protein
YP_004334963.1	PFAM: Biotin/lipoyl attachment; KEGG: sjp:SJA_C1-18650  acyltransferase
YP_004334964.1	PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; KEGG: sjp:SJA_C1-18660 pyruvate dehydrogenase E1 component beta subunit; SMART: Transketolase-like, pyrimidine-binding domain
YP_004334965.1	KEGG: rxy:Rxyl_3050 pyruvate dehydrogenase; PFAM: Dehydrogenase, E1 component
YP_004334966.1	KEGG: sma:SAV_1362 transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_004334967.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: scl:sce5373 hypothetical protein
YP_004334970.1	KEGG: mjl:Mjls_2672 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004334971.1	PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; KEGG: fri:FraEuI1c_3288 Cl-channel voltage-gated family protein
YP_004334972.1	PFAM: Crotonase, core; KEGG: reu:Reut_B5245 enoyl-CoA hydratase
YP_004334973.1	KEGG: rop:ROP_34590  molybdenum-pterin binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, MerR
YP_004334974.1	KEGG: bbe:BBR47_29730 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; PFAM: Amidohydrolase 2
YP_004334975.1	PFAM: Isochorismatase-like; KEGG: msp:Mspyr1_17060 nicotinamidase-like amidase
YP_004334976.1	TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: sro:Sros_4103  alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004334977.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: sco:SCO7594 oxidoreductase
YP_004334978.1	KEGG: amd:AMED_7471 hypothetical protein
YP_004334979.1	PFAM: Protein of unknown function DUF1486; KEGG: fre:Franean1_3128 hypothetical protein
YP_004334980.1	KEGG: sen:SACE_4181 ATP dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit
YP_004334981.1	KEGG: amd:AMED_4381 hypothetical protein
YP_004334982.1	KEGG: sgr:SGR_330 hypothetical protein
YP_004334984.1	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: mba:Mbar_A2518 sulfate transporter
YP_004334985.1	KEGG: aba:Acid345_3073 zinc-binding alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_004334986.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mno:Mnod_8441 alcohol dehydrogenase GroES domain protein; SMART: Polyketide synthase, enoylreductase
YP_004334987.1	PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: nml:Namu_0604 oxidoreductase molybdopterin binding
YP_004334988.1	PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; KEGG: sco:SCO7059 oxidoreductase
YP_004334989.1	KEGG: amd:AMED_7516 hypothetical protein
YP_004334990.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: nml:Namu_3456 methionine sulfoxide reductase A
YP_004334991.1	PFAM: Uracil-DNA glycosylase-like; KEGG: rmu:RMDY18_06580 uracil-DNA glycosylase
YP_004334992.1	PFAM: Peroxiredoxin, OsmC-like protein; GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sml:Smlt2722  OsmC-like protein
YP_004334993.1	KEGG: sil:SPO2304 hypothetical protein
YP_004334994.1	KEGG: req:REQ_31880 cytochrome c oxidase subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_004334995.1	PFAM: Ferritin/Dps protein; KEGG: sna:Snas_3834 ferritin Dps family protein
YP_004334996.1	KEGG: svi:Svir_15970 transaldolase; TIGRFAM: Transaldolase 2; PFAM: Transaldolase
YP_004334997.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bph:Bphy_3981 antibiotic biosynthesis monooxygenase
YP_004334998.1	KEGG: fri:FraEuI1c_4054 regulatory protein TetR
YP_004334999.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: saq:Sare_4813 TetR family transcriptional regulator
YP_004335000.1	KEGG: mjl:Mjls_0756 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004335001.1	KEGG: jan:Jann_0359 hypothetical protein
YP_004335002.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msp:Mspyr1_20300 transcriptional regulator, LysR family
YP_004335003.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sro:Sros_8702 hypothetical protein
YP_004335005.1	KEGG: svi:Svir_36320 esterase/lipase
YP_004335006.1	KEGG: sen:SACE_3297 cobalamin synthesis protein; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
YP_004335007.1	PFAM: Polyketide cyclase/dehydrase; KEGG: svi:Svir_02520 polyketide cyclase / dehydrase and lipid transport
YP_004335008.1	KEGG: saq:Sare_3490 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase
YP_004335009.1	PFAM: Protein of unknown function DUF985; KEGG: rop:ROP_50890 hypothetical protein
YP_004335010.1	PFAM: Protein of unknown function DUF1707; KEGG: rop:ROP_63340 hypothetical protein
YP_004335011.1	KEGG: mil:ML5_2527 php domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_004335012.1	KEGG: ami:Amir_1092 CHAD domain containing protein; PFAM: CHAD; SMART: CHAD
YP_004335013.1	KEGG: rop:ROP_30580  FAD-linked oxidase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004335014.1	PFAM: Amine oxidase; KEGG: mau:Micau_2203 amine oxidase
YP_004335015.1	KEGG: ami:Amir_0452 O-succinylbenzoate synthase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004335016.1	KEGG: cti:RALTA_A3198 cyclohexanone monooxygenase, flavin-containing monooxygenase (FMO); PFAM: FAD dependent oxidoreductase
YP_004335017.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tcu:Tcur_3836 TetR family transcriptional regulator
YP_004335018.1	PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: fal:FRAAL4326 iron utilization protein (partial match)
YP_004335019.1	KEGG: kra:Krad_3036 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335020.1	KEGG: amd:AMED_6746 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004335021.1	KEGG: amd:AMED_1207 undecaprenyl-diphosphatase; HAMAP: Bacitracin resistance protein BacA; PFAM: Bacitracin resistance protein BacA
YP_004335022.1	KEGG: amd:AMED_7688 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator
YP_004335023.1	PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: amd:AMED_1208 hypothetical protein
YP_004335024.1	PFAM: Glycosyl transferase, family 2; GtrA-like protein; KEGG: fra:Francci3_0318 glycosyl transferase protein
YP_004335025.1	PFAM: Glycosyl transferase, family 39; KEGG: fal:FRAAL3990  integral membrane protein
YP_004335026.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_6683 TetR family transcriptional regulator
YP_004335027.1	PFAM: Polyketide cyclase/dehydrase; KEGG: amd:AMED_6353 hypothetical protein
YP_004335028.1	KEGG: sen:SACE_1293 acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase
YP_004335029.1	KEGG: scb:SCAB_85211 hypothetical protein
YP_004335030.1	PFAM: Domain of unknown function DUF304l; KEGG: sen:SACE_1222 membrane-flanked domain-containing protein
YP_004335031.1	PFAM: Domain of unknown function DUF304l; KEGG: ami:Amir_1063 membrane-flanked domain protein
YP_004335032.1	PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, KEGG: amd:AMED_7081 hypothetical protein
YP_004335033.1	HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: sen:SACE_1292 oligoribonuclease; SMART: Exonuclease
YP_004335034.1	KEGG: rso:RSc2905 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein
YP_004335035.1	PFAM: Isochorismatase-like; KEGG: rhi:NGR_b01900 N-carbamoylsarcosine amidase
YP_004335036.1	PFAM: ABC transporter-like; KEGG: bbt:BBta_1368 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004335037.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b01890  amino acid ABC transporter, permease
YP_004335038.1	KEGG: vap:Vapar_0154 extracellular solute-binding protein, family 3
YP_004335039.1	KEGG: sto:ST0052 hypothetical protein; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related
YP_004335040.1	KEGG: bpy:Bphyt_6204 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004335041.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_4340 major facilitator transporter
YP_004335042.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sen:SACE_2644 LysR family transcriptional regulator
YP_004335043.1	PFAM: Amidohydrolase 2; KEGG: swi:Swit_1683 amidohydrolase 2
YP_004335044.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rlg:Rleg_5072 alpha/beta hydrolase fold protein
YP_004335045.1	KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004335046.1	KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004335047.1	KEGG: tro:trd_0579 oxidoreductase, large chain; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004335048.1	KEGG: fre:Franean1_3210 carbon monoxide dehydrogenase subunit G
YP_004335049.1	KEGG: mka:MK0724 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004335050.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rhi:NGR_b01850 hypothetical protein
YP_004335051.1	PFAM: Luciferase-like, subgroup; KEGG: rhi:NGR_b01860 probable monooxygenase
YP_004335052.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: mkm:Mkms_3844 alpha/beta hydrolase fold
YP_004335053.1	KEGG: cag:Cagg_0349 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain
YP_004335054.1	TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: ami:Amir_5484 mycothiol-dependent maleylpyruvate isomerase
YP_004335055.1	KEGG: saq:Sare_4933 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335056.1	KEGG: cfl:Cfla_0296 CoA-binding domain protein; PFAM: CoA-binding; SMART: CoA-binding
YP_004335057.1	PFAM: Monooxygenase, FAD-binding; KEGG: cwo:Cwoe_2817 monooxygenase FAD-binding protein
YP_004335058.1	KEGG: cfl:Cfla_0281 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004335059.1	PFAM: Cupin 2, conserved barrel; KEGG: aau:AAur_0331 gentisate 1,2-dioxygenase
YP_004335060.1	PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal; KEGG: bbe:BBR47_49950 phenylacetic acid degradation operon negative regulatory protein
YP_004335061.1	PFAM: SNARE associated Golgi protein; KEGG: mul:MUL_3280 transmembrane protein DedA
YP_004335062.1	KEGG: tbi:Tbis_2824 glucose sorbosone dehydrogenase
YP_004335063.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ccs:CCNA_02049 ABM superfamily monooxygenase
YP_004335064.1	TIGRFAM: Glycerol kinase; KEGG: saq:Sare_4607 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal
YP_004335065.1	KEGG: gob:Gobs_5039 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004335066.1	KEGG: sro:Sros_7483 MIP family channel protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein
YP_004335067.1	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: kfl:Kfla_3196 glycerol kinase
YP_004335068.1	KEGG: scb:SCAB_36181 glycerol phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_004335069.1	TIGRFAM: Kynureninase; KEGG: amd:AMED_6396 kynureninase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004335070.1	PFAM: Tryptophan 2,3-dioxygenase; KEGG: kra:Krad_1864 tryptophan 23-dioxygenase
YP_004335071.1	KEGG: sna:Snas_2830  transcriptional regulator
YP_004335072.1	PFAM: Uncharacterised protein family YphA; KEGG: rha:RHA1_ro04235 hypothetical protein
YP_004335073.1	KEGG: amd:AMED_3585 YVTN beta-propeller repeat-containing protein
YP_004335074.1	PFAM: Polysaccharide deacetylase; KEGG: amd:AMED_3586 polysaccharide deacetylase
YP_004335075.1	PFAM: Major facilitator superfamily MFS-1; KEGG: fri:FraEuI1c_1649 major facilitator superfamily MFS_1
YP_004335076.1	PFAM:  esterase; KEGG: amd:AMED_0317 esterase/lipase-like protein
YP_004335077.1	TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: kfl:Kfla_1879 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding
YP_004335078.1	PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004335079.1	TIGRFAM: Conserved hypothetical protein CHP03843; KEGG: sen:SACE_2204 phosphatidylinositol 3-and 4-kinase, catalytic
YP_004335080.1	TIGRFAM: Protein of unknown function DUF3090; KEGG: sen:SACE_2203 hypothetical protein
YP_004335081.1	TIGRFAM: Phosphomutase MSMEG4193, PFAM: Histidine phosphatase superfamily, clade-1; KEGG: svi:Svir_20000 fructose-2,6-bisphosphatase; SMART: Histidine phosphatase superfamily, clade-1
YP_004335082.1	TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: rer:RER_32020 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA
YP_004335083.1	PFAM: NADP-dependent oxidoreductase domain; KEGG: svi:Svir_20030 predicted oxidoreductase, aryl-alcohol dehydrogenase like protein
YP_004335084.1	KEGG: svi:Svir_20050 hypothetical protein
YP_004335085.1	manually curated; KEGG: nml:Namu_1085 hypothetical protein
YP_004335086.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: rha:RHA1_ro02339 NADPH:quinone reductase; SMART: Polyketide synthase, enoylreductase
YP_004335087.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cwo:Cwoe_4573 short-chain dehydrogenase/reductase SDR
YP_004335088.1	KEGG: svi:Svir_17060 hypothetical protein; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004335091.1	KEGG: sen:SACE_5164 phosphohistidine phosphatase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004335092.1	TIGRFAM: Domain of unknown function DUF11; KEGG: sus:Acid_0721 FG-GAP repeat-containing protein
YP_004335093.1	KEGG: cgr:CAGL0J02552g hypothetical protein
YP_004335094.1	KEGG: rop:ROP_16280  MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004335095.1	PFAM: Luciferase-like, subgroup; KEGG: rha:RHA1_ro01948 alkanal monooxygenase
YP_004335096.1	KEGG: msl:Msil_1993 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB
YP_004335097.1	PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: sro:Sros_6271 glucosamine--fructose-6-phosphate aminotransferase, isomerizing
YP_004335098.1	KEGG: sco:SCO2788 hypothetical protein
YP_004335099.1	PFAM: Domain of unknown function DUF559; KEGG: msm:MSMEG_5844 hypothetical protein
YP_004335100.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; Pentapeptide repeat; KEGG: ami:Amir_6252 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004335101.1	KEGG: rha:RHA1_ro02658 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335102.1	PFAM: Protein of unknown function DUF427; KEGG: rop:ROP_58660 hypothetical protein
YP_004335103.1	KEGG: nda:Ndas_3206  F420-dependent oxidoreductase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv3520c; PFAM: Luciferase-like, subgroup
YP_004335104.1	KEGG: rpc:RPC_2505 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004335105.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: ami:Amir_6253 alpha-ketoglutarate decarboxylase; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; 2-oxoacid dehydrogenase acyltransferase, catalytic domain
YP_004335106.1	KEGG: ami:Amir_6254 hypothetical protein
YP_004335107.1	KEGG: ami:Amir_0541 hypothetical protein
YP_004335108.1	PFAM: Cell divisionFtsK/SpoIIIE; KEGG: ami:Amir_0542 cell divisionFtsK/SpoIIIE
YP_004335110.1	KEGG: sen:SACE_0669 hypothetical protein
YP_004335111.1	KEGG: sen:SACE_3894 integral membrane protein
YP_004335112.1	KEGG: sen:SACE_1822 spore coat protein (outer); PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3; Multicopper oxidase, type 1
YP_004335113.1	KEGG: kfl:Kfla_5958 hypothetical protein
YP_004335114.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: kfl:Kfla_7067 transcriptional regulator, PadR-like family
YP_004335115.1	KEGG: mil:ML5_1039 hypothetical protein
YP_004335116.1	PFAM: Luciferase-like, subgroup; KEGG: rha:RHA1_ro11046 limonene 1,2-monooxygenase (NADH-dependent)
YP_004335117.1	PFAM: Helix-turn-helix, Fis-type; GAF; KEGG: msm:MSMEG_1970 sigma factor
YP_004335118.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: scb:SCAB_8441 oxidoreductase
YP_004335119.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: mta:Moth_2210 PadR family transcriptional regulator
YP_004335120.1	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: rop:ROP_60640  ABC transporter substrate-binding protein
YP_004335121.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_2815 ABC-type proline/glycine betaine transport systems, permease component
YP_004335122.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: amd:AMED_7958 permease component of ABC-type proline/glycine betaine transport system
YP_004335123.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: ami:Amir_6271 ABC transporter related; PFAM: ABC transporter-like
YP_004335124.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; KEGG: ami:Amir_6278 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS
YP_004335125.1	KEGG: nfa:nfa47090  malate dehydrogenase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding
YP_004335126.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rha:RHA1_ro03350 hydrolase
YP_004335127.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sro:Sros_1993  glyoxalase/dioxygenase
YP_004335128.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sro:Sros_8702 hypothetical protein
YP_004335129.1	KEGG: amd:AMED_6356 hypothetical protein
YP_004335131.1	KEGG: amd:AMED_6358 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335132.1	KEGG: amd:AMED_6359 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; ATPase-like, ATP-binding domain
YP_004335133.1	KEGG: sen:SACE_6418 hypothetical protein; manually curated; PFAM: Peptidase S24/S26A/S26B, conserved region
YP_004335134.1	TIGRFAM: Superoxide dismutase, Nickel-type; KEGG: sen:SACE_6419 superoxide dismutase; PFAM: Superoxide dismutase, Nickel-type
YP_004335135.1	PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: nfa:nfa6830  RNA pseudouridylate synthase
YP_004335136.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: rha:RHA1_ro01543 hypothetical protein
YP_004335137.1	PFAM: Methyltransferase type 11; KEGG: req:REQ_07710 sam dependent methyltransferase
YP_004335138.1	KEGG: amd:AMED_7967 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004335139.1	PFAM: YkuD domain; KEGG: sen:SACE_4786  secreted protein
YP_004335140.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amd:AMED_7968 acetyltransferase
YP_004335141.1	KEGG: ami:Amir_6287 hypothetical protein
YP_004335142.1	KEGG: ami:Amir_6288 diacylglycerol kinase catalytic region; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain
YP_004335143.1	PFAM: Transcription factor WhiB; KEGG: ami:Amir_6289 transcription factor WhiB
YP_004335144.1	KEGG: sen:SACE_6427  two-component system sensor kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold-4; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004335145.1	TIGRFAM: Anti-sigma factor RshA; KEGG: sen:SACE_6429 anti-sigma factor
YP_004335146.1	KEGG: ami:Amir_6292 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004335147.1	KEGG: amd:AMED_7976 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain
YP_004335148.1	KEGG: afo:Afer_1368 protein of unknown function DUF74; HAMAP: Uncharacterised protein family UPF0145; PFAM: Uncharacterised protein family UPF0145
YP_004335149.1	KEGG: ami:Amir_6294 hypothetical protein
YP_004335150.1	PFAM: Protein of unknown function DUF159; KEGG: amd:AMED_7978 hypothetical protein
YP_004335151.1	PFAM: Enolpyruvate transferase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: ami:Amir_6296 3-phosphoshikimate 1-carboxyvinyltransferase
YP_004335152.1	PFAM: Ribosome biogenesis GTPase RsgA, KEGG: sen:SACE_6436 GTPase EngC
YP_004335153.1	KEGG: sen:SACE_6437 hypothetical protein
YP_004335154.1	KEGG: ami:Amir_1754 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004335155.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_0302  transcriptional regulator, TetR family
YP_004335156.1	KEGG: mkm:Mkms_2678 hypothetical protein
YP_004335157.1	TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; KEGG: sen:SACE_1979 delta-1-pyrroline-5-carboxylate dehydrogenase precursor; PFAM: Aldehyde dehydrogenase domain
YP_004335158.1	PFAM: Protein of unknown function DUF1707; KEGG: nml:Namu_4245 hypothetical protein
YP_004335159.1	PFAM: Crotonase, core; KEGG: sen:SACE_3450 enoyl-CoA hydratase/isomerase
YP_004335160.1	PFAM: Formate/nitrite transporter; KEGG: kra:Krad_3500 formate/nitrite family of transporters-like protein
YP_004335161.1	KEGG: ami:Amir_6299 hypothetical protein
YP_004335162.1	KEGG: ami:Amir_6300 acyltransferase, WS/DGAT/MGAT; TIGRFAM: Acyltransferase, WS/DGAT/MGAT; PFAM: O-acyltransferase, WSD1, N-terminal
YP_004335163.1	KEGG: ami:Amir_6302 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding
YP_004335164.1	KEGG: amd:AMED_0219 hypothetical protein
YP_004335165.1	KEGG: amd:AMED_2112 L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase
YP_004335166.1	KEGG: mil:ML5_0745 hypothetical protein
YP_004335167.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; HTH transcriptional regulator, MarR; KEGG: ami:Amir_6303 HAD-superfamily hydrolase, subfamily IA, variant 3; SMART: HTH transcriptional regulator, MarR
YP_004335168.1	KEGG: rrs:RoseRS_1726 dihydrolipoyllysine-residue succinyltransferase
YP_004335169.1	SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: svi:Svir_30890 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold
YP_004335170.1	KEGG: ami:Amir_6306 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein
YP_004335171.1	PFAM: Phosphoribosyltransferase; KEGG: nml:Namu_1364 phosphoribosyltransferase
YP_004335172.1	KEGG: amd:AMED_7991 lipoprotein; PFAM: Lipoprotein LpqB, beta-propeller domain, C-terminal; GerMN domain; SMART: GerMN domain
YP_004335173.1	KEGG: ami:Amir_6309 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004335174.1	KEGG: ami:Amir_6310 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335175.1	PFAM: Thymidylate kinase; KEGG: amd:AMED_7999 dTMP kinase
YP_004335176.1	PFAM: NUDIX hydrolase domain; KEGG: sro:Sros_0188 hypothetical protein
YP_004335177.1	PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: Adenosylhomocysteinase; HAMAP: Adenosylhomocysteinase; KEGG: amd:AMED_8006 adenosylhomocysteinase
YP_004335178.1	KEGG: mil:ML5_5270 hypothetical protein
YP_004335179.1	KEGG: mva:Mvan_0905 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335180.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_5224 TetR family transcriptional regulator
YP_004335181.1	KEGG: fre:Franean1_5223 glycosyl transferase protein; TIGRFAM: UDP-glycosyltransferase, MGT; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal
YP_004335182.1	PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: kfl:Kfla_0865 hypothetical protein
YP_004335183.1	PFAM: Amino acid permease domain; KEGG: ami:Amir_6322 amino acid permease-associated region
YP_004335185.1	TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: mkm:Mkms_2150 L-alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, N-terminal; Alanine dehydrogenase/PNT, C-terminal
YP_004335186.1	KEGG: mab:MAB_3099c AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type
YP_004335187.1	KEGG: amd:AMED_8010 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004335188.1	TIGRFAM: Mannose-6-phosphate isomerase, type I; KEGG: svi:Svir_30990 mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type I
YP_004335189.1	KEGG: sen:SACE_6458 hypothetical protein
YP_004335190.1	PFAM: Uncharacterised protein family UPF0434/Trm112; KEGG: amd:AMED_8014 hypothetical protein
YP_004335191.1	PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: ami:Amir_6327 phosphomannomutase/phosphoglucomutase
YP_004335192.1	manually curated; KEGG: svi:Svir_31030 hypothetical protein
YP_004335193.1	manually curated; KEGG: svi:Svir_31040 hypothetical protein
YP_004335194.1	PFAM: Transcription factor WhiB; KEGG: nml:Namu_4172 transcription factor WhiB
YP_004335195.1	PFAM: Peptidase M50; KEGG: sen:SACE_6465 peptidase M50
YP_004335196.1	PFAM: NUDIX hydrolase domain; KEGG: ami:Amir_6335 NUDIX hydrolase
YP_004335197.1	TIGRFAM: F420-0:gamma-glutamyl ligase; Coenzyme F420 biosynthesis protein FbiB, C-terminal; HAMAP: F420-0:gamma-glutamyl ligase; KEGG: nfa:nfa46200 F420-0--gamma-glutamyl ligase; PFAM: F420-0 gamma-glutamyl ligase-related; Nitroreductase-like
YP_004335198.1	TIGRFAM: LPPG:Fo 2-phospho-L-lactate transferase; HAMAP: LPPG:FO 2-phospho-L-lactate transferase; KEGG: sen:SACE_6466 LPPG:FO 2-phospho-L-lactate transferase; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052
YP_004335199.1	KEGG: tpr:Tpau_3617 peroxiredoxin; PFAM: Glutathione peroxidase
YP_004335200.1	KEGG: svi:Svir_06190 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
YP_004335201.1	KEGG: tpr:Tpau_1064 nucleotidyl transferase; PFAM: Nucleotidyl transferase
YP_004335202.1	KEGG: svi:Svir_06160 predicted glycosyltransferase
YP_004335203.1	KEGG: nda:Ndas_2630 Sel1 domain protein repeat-containing protein
YP_004335204.1	PFAM: Glycosyl transferase, family 2; KEGG: tcu:Tcur_0625 glycosyl transferase 2 protein
YP_004335205.1	KEGG: amd:AMED_7688 LytR family transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator
YP_004335206.1	TIGRFAM: Conserved hypothetical protein CHP03089; KEGG: mgi:Mflv_4738 hypothetical protein
YP_004335207.1	KEGG: sen:SACE_4356 threonine dehydratase; TIGRFAM: Threonine dehydratase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal
YP_004335208.1	PFAM: Ribonuclease BN-related; KEGG: cwo:Cwoe_0752 ribonuclease BN
YP_004335209.1	PFAM: Uncharacterised protein family UPF0118; KEGG: rha:RHA1_ro04285 hypothetical protein
YP_004335210.1	KEGG: sco:SCO5332 hypothetical protein
YP_004335211.1	PFAM: Creatininase; KEGG: aau:AAur_pTC10048  creatinine amidohydrolase
YP_004335212.1	KEGG: aau:AAur_pTC10047  sporulation-associated protein
YP_004335213.1	KEGG: mau:Micau_5351 hypothetical protein
YP_004335215.1	KEGG: kfl:Kfla_2083 hypothetical protein
YP_004335216.1	PFAM: Cell divisionFtsK/SpoIIIE; KEGG: mau:Micau_5353 cell division protein FtsK/SpoIIIE
YP_004335218.1	KEGG: mau:Micau_5356 hypothetical protein
YP_004335221.1	KEGG: kfl:Kfla_2092 hypothetical protein
YP_004335222.1	KEGG: saq:Sare_3570 excisionase/Xis, DNA-binding
YP_004335223.1	PFAM: Integrase, catalytic core, phage; KEGG: ami:Amir_6364 integrase protein
YP_004335224.1	KEGG: sen:SACE_3580 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004335225.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sen:SACE_3581 TetR family transcriptional regulator
YP_004335226.1	PFAM: Protein of unknown function DUF1801; KEGG: sti:Sthe_1180 hypothetical protein
YP_004335227.1	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; KEGG: svi:Svir_06040 phosphoribosylaminoimidazole carboxylase, PurE protein; PFAM: Phosphoribosylaminoimidazole carboxylase, core
YP_004335228.1	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: ami:Amir_6368 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type
YP_004335229.1	PFAM: GtrA-like protein; KEGG: sen:SACE_6489 hypothetical protein
YP_004335230.1	KEGG: sen:SACE_6490 sensor kinase, two-component system; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004335231.1	KEGG: ami:Amir_6380 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335232.1	KEGG: svi:Svir_05970 histidinol-phosphate phosphatase; TIGRFAM: Histidinol-phosphate phosphatase, , inositol monophosphatase; PFAM: Inositol monophosphatase
YP_004335233.1	PFAM: MaoC-like dehydratase; KEGG: sen:SACE_6497 MaoC-like dehydratase
YP_004335234.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mab:MAB_3312 TetR family transcriptional regulator
YP_004335235.1	KEGG: mab:MAB_3311c hypothetical protein; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004335236.1	KEGG: fri:FraEuI1c_4053 hypothetical protein
YP_004335237.1	PFAM: Nitroreductase-like; KEGG: mab:MAB_3310c oxygen-insensitive NAD(P)H nitroreductase
YP_004335238.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: fra:Francci3_2731 alcohol dehydrogenase GroES-like protein; SMART: Polyketide synthase, enoylreductase
YP_004335239.1	PFAM: Major facilitator superfamily MFS-1; KEGG: fri:FraEuI1c_5524 major facilitator superfamily MFS_1
YP_004335240.1	PFAM: Protein of unknown function DUF1470; KEGG: amd:AMED_3547 hypothetical protein
YP_004335241.1	KEGG: hha:Hhal_2401 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2
YP_004335242.1	KEGG: xau:Xaut_2682 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal
YP_004335243.1	KEGG: gob:Gobs_2448 LytTr DNA-binding region; PFAM: LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain
YP_004335244.1	KEGG: xau:Xaut_2680 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal
YP_004335245.1	KEGG: svi:Svir_05920 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase
YP_004335246.1	PFAM: Domain of unknown function DUF304l; KEGG: sen:SACE_6500 membrane-flanked domain-containing protein
YP_004335247.1	KEGG: mil:ML5_1093 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal
YP_004335248.1	KEGG: svi:Svir_05890 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PFAM: Carboxyl transferase
YP_004335249.1	KEGG: tcu:Tcur_4131 hypothetical protein
YP_004335250.1	TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: sen:SACE_6507 Maf-like protein; PFAM: Maf-like protein
YP_004335251.1	PFAM: Rhodanese-like; KEGG: kra:Krad_3079 rhodanese domain protein; SMART: Rhodanese-like
YP_004335252.1	PFAM: Fe-S metabolism associated SufE; KEGG: gbr:Gbro_1834 Fe-S metabolism associated SufE
YP_004335253.1	KEGG: mau:Micau_4297 hypothetical protein
YP_004335254.1	PFAM: Uncharacterised protein family UPF0276; KEGG: mau:Micau_4298 hypothetical protein
YP_004335255.1	KEGG: mau:Micau_4299 hypothetical protein
YP_004335256.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: mjl:Mjls_1325 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal
YP_004335258.1	KEGG: bpr:GBP346_A4009 exonuclease
YP_004335260.1	KEGG: ami:Amir_6404 flavoprotein disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004335261.1	PFAM: AIG2-like; KEGG: sen:SACE_6527 hypothetical protein
YP_004335262.1	KEGG: ami:Amir_6396 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; SMART: Biotin carboxylase, C-terminal
YP_004335263.1	KEGG: ddr:Deide_10010  citrate (pro-3S)-lyase beta chain (citrase); PFAM: Aldehyde-lyase domain
YP_004335264.1	KEGG: afo:Afer_1346 propionyl-CoA carboxylase; PFAM: Carboxyl transferase
YP_004335265.1	PFAM: MaoC-like dehydratase; KEGG: dge:Dgeo_1254 MaoC-like protein dehydratase
YP_004335266.1	PFAM: Crotonase, core; KEGG: bpt:Bpet1119 enoyl-CoA hydratase
YP_004335267.1	KEGG: bxe:Bxe_A2757  crotonobetaine/carnitine-CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335268.1	PFAM: MaoC-like dehydratase; KEGG: bts:Btus_1731 MaoC domain protein dehydratase
YP_004335269.1	PFAM: Major facilitator superfamily MFS-1; KEGG: nfa:nfa24070  transporter
YP_004335270.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_1887 TetR family transcriptional regulator
YP_004335271.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: hje:HacjB3_06555  arylesterase, non-heme chloride peroxidase
YP_004335272.1	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: ami:Amir_6414 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004335273.1	KEGG: amd:AMED_0912 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004335274.1	TIGRFAM:  purine nucleotide phosphorylase; Inosine guanosine/xanthosine phosphorylase; KEGG: ami:Amir_6421 purine nucleotide phosphorylase; PFAM: Nucleoside phosphorylase domain
YP_004335275.1	PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; KEGG: ami:Amir_6422 phosphomannomutase
YP_004335276.1	PFAM: Lipase, GDSL; KEGG: cfl:Cfla_0383 ricin B lectin
YP_004335277.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ami:Amir_6428 transcriptional regulator, TetR family
YP_004335278.1	KEGG: mjl:Mjls_1267 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase
YP_004335279.1	KEGG: svi:Svir_01260 haloalkane dehalogenase; PFAM: Alpha/beta hydrolase fold-1
YP_004335281.1	KEGG: bcv:Bcav_0227 hypothetical protein
YP_004335282.1	KEGG: svi:Svir_05470 hypothetical protein
YP_004335283.1	PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: sna:Snas_1362 adenosine deaminase
YP_004335284.1	KEGG: ami:Amir_6447 hypothetical protein
YP_004335285.1	KEGG: amd:AMED_2893 MviN-like protein; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN
YP_004335286.1	PFAM: Polyketide cyclase/dehydrase; KEGG: rop:ROP_38140 hypothetical protein
YP_004335287.1	KEGG: rer:RER_20120 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal
YP_004335288.1	KEGG: ami:Amir_6469 ribonuclease; TIGRFAM: Conserved hypothetical protein CHP00766, YhjD; Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_004335289.1	TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: req:REQ_34370 tryptophan-tRNA synthetase trps; PFAM: Aminoacyl-tRNA synthetase, class Ib
YP_004335290.1	KEGG: sro:Sros_1535 9-cis-epoxycarotenoid dioxygenase; PFAM: Carotenoid oxygenase
YP_004335291.1	KEGG: sro:Sros_1545 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335292.1	KEGG: sro:Sros_1533 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; TIGRFAM: F420-dependent oxidoreductase, Rv3093c; PFAM: Luciferase-like, subgroup
YP_004335294.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: FO synthase, subunit 1; Complex F420, CofH; FO synthase, subunit 2; KEGG: sen:SACE_6594 FO synthase; HAMAP: FO synthase subunit 2; FO synthase, subunit 1; PFAM: Radical SAM
YP_004335295.1	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: mil:ML5_3805 YbaK/prolyl-tRNA synthetase associated region
YP_004335296.1	PFAM: Serine/threonine-protein kinase-like domain; KEGG: sen:SACE_5901 serine/threonine protein kinase; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain
YP_004335297.1	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: ami:Amir_6475 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_004335298.1	KEGG: ami:Amir_6477 hypothetical protein
YP_004335299.1	KEGG: gob:Gobs_4413 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, eukaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004335300.1	KEGG: ami:Amir_6499 hypothetical protein
YP_004335301.1	HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: sen:SACE_6651 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004335302.1	PFAM: Pentapeptide repeat; KEGG: sen:SACE_6655 pentapeptide repeat-containing protein
YP_004335303.1	KEGG: fra:Francci3_1993 hypothetical protein
YP_004335304.1	KEGG: sen:SACE_6660 error-prone DNA polymerase; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: DNA polymerase III, alpha subunit; HAMAP: DNA polymerase, error-prone; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_004335305.1	KEGG: amd:AMED_4174 major facilitator transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004335306.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bte:BTH_I2940 TetR family transcriptional regulator
YP_004335307.1	KEGG: fri:FraEuI1c_4664 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004335308.1	KEGG: sma:SAV_2809 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; Transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR
YP_004335309.1	KEGG: fal:FRAAL4104  FMN-dependent lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase
YP_004335310.1	KEGG: sen:SACE_6661  DNA-directed DNA polymerase
YP_004335311.1	KEGG: amd:AMED_0812 hypothetical protein
YP_004335312.1	PFAM: Glycosyl transferase, family 2; KEGG: cfl:Cfla_0377 glycosyl transferase 2
YP_004335314.1	KEGG: ami:Amir_6503 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain
YP_004335315.1	TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: nfa:nfa49870 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal
YP_004335316.1	KEGG: ami:Amir_6505 AAA ATPase containing von Willebrand factor type A (vWA) domain
YP_004335317.1	KEGG: nfa:nfa49890 antigen 34 kDa family protein
YP_004335318.1	SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: amd:AMED_0803 succinyl-CoA synthetase alpha subunit; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase
YP_004335319.1	PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; KEGG: amd:AMED_0802 succinyl-CoA synthetase beta subunit
YP_004335320.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: kfl:Kfla_1265 lipase class 2
YP_004335321.1	PFAM: Peptidase M23; KEGG: rop:ROP_pROB01-02760 peptidase M23 family protein
YP_004335322.1	KEGG: sen:SACE_6681  ATP-dependent DNA helicase; TIGRFAM: DNA helicase, ATP-dependent, PcrA type; PFAM: DNA helicase, UvrD/REP type
YP_004335323.1	TIGRFAM: Chorismate mutase, high GC Gram-positive bacteria/archaeal; PFAM: Chorismate mutase, type II; KEGG: sen:SACE_6683 chorismate mutase; SMART: Chorismate mutase
YP_004335324.1	KEGG: amd:AMED_0795 hypothetical protein
YP_004335325.1	KEGG: rci:RRC34 hypothetical protein
YP_004335326.1	PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase
YP_004335327.1	KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004335328.1	KEGG: ami:Amir_6525 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004335329.1	PFAM: ATPase-like, ATP-binding domain; Phage shock domain; KEGG: amd:AMED_0787 two-component system sensor kinase
YP_004335330.1	PFAM: Phage shock domain; KEGG: sen:SACE_6696 hypothetical protein
YP_004335332.1	PFAM: Methylenetetrahydrofolate reductase; KEGG: adg:Adeg_0345 methylenetetrahydrofolate reductase
YP_004335333.1	PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase; KEGG: sen:SACE_6701 GMP synthase
YP_004335334.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: scb:SCAB_86191 hypothetical protein
YP_004335335.1	KEGG: mav:MAV_3971 death-on-curing protein; TIGRFAM: Death-on-curing protein; PFAM: Filamentation induced by cAMP/death on curing-related
YP_004335336.1	PFAM: CopG-like DNA-binding; KEGG: fre:Franean1_5368 hypothetical protein
YP_004335337.1	manually curated; TIGRFAM: IMP dehydrogenase-related 2; KEGG: sen:SACE_6707 inosine 5-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase
YP_004335338.1	SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: svi:Svir_04740 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core
YP_004335339.1	KEGG: ami:Amir_6536 hypothetical protein
YP_004335340.1	KEGG: amd:AMED_0769 hypothetical protein
YP_004335341.1	manually curated; TIGRFAM: RNA polymerase sigma-70; KEGG: svi:Svir_04710 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004335342.1	KEGG: ami:Amir_6539 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004335343.1	KEGG: req:REQ_34970 hypothetical protein
YP_004335344.1	KEGG: ami:Amir_6541 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004335345.1	PFAM: Transcription factor WhiB; KEGG: ami:Amir_6542 transcription factor WhiB
YP_004335346.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: ami:Amir_6543 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_004335347.1	HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: ami:Amir_6544 chaperonin Cpn10; SMART: Chaperonin Cpn10
YP_004335348.1	KEGG: gbr:Gbro_1246 pyrrolo-quinoline quinone beta-propeller repeat-containing protein
YP_004335349.1	KEGG: sen:SACE_0624 aldo/keto reductase oxidoreductase; PFAM: NADP-dependent oxidoreductase domain
YP_004335350.1	PFAM: Peptidase M22, glycoprotease; TIGRFAM: Peptidase M22, O-sialoglycoprotein peptidase; Peptidase M22, glycoprotease, subgroup; HAMAP: Peptidase M22, O-sialoglycoprotein peptidase; KEGG: svi:Svir_04650 O-sialoglycoprotein endopeptidase
YP_004335351.1	KEGG: mav:MAV_4368 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004335352.1	KEGG: ami:Amir_6548 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease
YP_004335353.1	KEGG: nca:Noca_3196 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004335354.1	KEGG: req:REQ_35300 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria
YP_004335355.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: ami:Amir_6555 alpha/beta hydrolase fold protein
YP_004335356.1	PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: svi:Svir_04590 alanine racemase
YP_004335357.1	KEGG: amd:AMED_0737  ribokinase; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal
YP_004335358.1	KEGG: mva:Mvan_3404 hypothetical protein
YP_004335359.1	KEGG: ami:Amir_6559 dienelactone hydrolase-like protein
YP_004335362.1	TIGRFAM: Phosphoglucosamine mutase; KEGG: amd:AMED_0728 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal
YP_004335363.1	PFAM: Ribosomal protein S9; KEGG: nml:Namu_1177 30S ribosomal protein S9
YP_004335364.1	KEGG: amd:AMED_0726 large subunit ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13
YP_004335365.1	KEGG: sen:SACE_6782 hypothetical protein
YP_004335366.1	KEGG: ami:Amir_6567 protein of unknown function DUF909
YP_004335367.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gob:Gobs_4039 GCN5-related N-acetyltransferase
YP_004335368.1	KEGG: cfl:Cfla_2780 amidase; PFAM: Amidase
YP_004335369.1	PFAM: Acetamidase/Formamidase; KEGG: cfl:Cfla_2779 acetamidase/formamidase
YP_004335370.1	KEGG: bbt:BBta_2105  N-isopropylammelide isopropylaminohydrolase; PFAM: Amidohydrolase 3
YP_004335371.1	KEGG: mpo:Mpop_4351 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase
YP_004335373.1	KEGG: fri:FraEuI1c_4980 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_004335374.1	KEGG: ami:Amir_6569 heat shock protein 70
YP_004335375.1	PFAM: Cell divisionFtsK/SpoIIIE; KEGG: mau:Micau_5894 cell division protein FtsK/SpoIIIE
YP_004335376.1	KEGG: sro:Sros_8100 hypothetical protein; TIGRFAM: Type VII secretion system protein EccD; PFAM: Type VII secretion system protein EccD
YP_004335377.1	PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: tpr:Tpau_0863 peptidase S8 and S53 subtilisin kexin sedolisin
YP_004335378.1	PFAM: Type VII secretion system protein EccB; KEGG: gbr:Gbro_3295 hypothetical protein
YP_004335379.1	KEGG: sco:SCO1070 two component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004335380.1	KEGG: sco:SCO1071 two component system sensor kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004335381.1	PFAM: Protein of unknown function DUF1707; KEGG: amd:AMED_0797 hypothetical protein
YP_004335382.1	PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: tpr:Tpau_3380 tRNA pseudouridine synthase A
YP_004335383.1	TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: tpr:Tpau_3381 ribosomal protein L17; PFAM: Ribosomal protein L17
YP_004335384.1	SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: ami:Amir_6583 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal
YP_004335385.1	TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: sen:SACE_6804 30S ribosomal protein S4; SMART: RNA-binding S4
YP_004335386.1	KEGG: amd:AMED_0706 small subunit ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11
YP_004335387.1	KEGG: rop:ROP_62120 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13
YP_004335388.1	TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: ami:Amir_6587 ribosomal protein L36; PFAM: Ribosomal protein L36
YP_004335389.1	TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: amd:AMED_0702 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type
YP_004335390.1	KEGG: rha:RHA1_ro01581 NAD(P) transhydrogenase beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit
YP_004335391.1	KEGG: rop:ROP_12850 nicotinamide nucleotide transhydrogenase alpha subunit 2 PntAB
YP_004335392.1	KEGG: rop:ROP_12860 nicotinamide nucleotide transhydrogenase alpha subunit 1 PntAA; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal
YP_004335393.1	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: amd:AMED_0701 methionyl aminopeptidase; PFAM: Peptidase M24, structural domain
YP_004335394.1	TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: rha:RHA1_ro06154 adenylate kinase; PFAM: Adenylate kinase
YP_004335395.1	KEGG: sen:SACE_6813 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein
YP_004335396.1	TIGRFAM: Ribosomal protein L15, bacterial-type; KEGG: req:REQ_35670 50S ribosomal protein L15 RplO
YP_004335397.1	KEGG: kra:Krad_0706 ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain
YP_004335398.1	KEGG: sen:SACE_6819 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal
YP_004335399.1	KEGG: svi:Svir_04140 LSU ribosomal protein L18P; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5
YP_004335400.1	KEGG: ami:Amir_6599 ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain
YP_004335401.1	PFAM: Ribosomal protein S8; KEGG: ami:Amir_6600 ribosomal protein S8
YP_004335402.1	PFAM: Ribosomal protein S14; KEGG: kra:Krad_0701 ribosomal protein S14
YP_004335403.1	PFAM: Ribosomal protein L5; KEGG: ami:Amir_6602 ribosomal protein L5
YP_004335404.1	TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: amd:AMED_0688 large subunit ribosomal protein L24; SMART: KOW
YP_004335405.1	KEGG: ami:Amir_6604 ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e
YP_004335406.1	KEGG: req:REQ_35770 30S ribosomal protein S17 RpsQ; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17
YP_004335407.1	KEGG: ami:Amir_6606 ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29
YP_004335408.1	TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: nml:Namu_1130 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16
YP_004335409.1	TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: tpr:Tpau_3429 ribosomal protein S3; SMART: K Homology
YP_004335410.1	KEGG: amd:AMED_0682 large subunit ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17
YP_004335411.1	KEGG: ami:Amir_6610 ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15
YP_004335412.1	KEGG: sen:SACE_6833 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain
YP_004335413.1	PFAM: Ribosomal protein L25/L23; KEGG: svi:Svir_04000 50S ribosomal protein L23
YP_004335414.1	PFAM: Ribosomal protein L4/L1e; KEGG: bfa:Bfae_23800 50S ribosomal protein L4
YP_004335415.1	KEGG: ami:Amir_6614 ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3
YP_004335416.1	TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: ami:Amir_6615 30S ribosomal protein S10; PFAM: Ribosomal protein S10
YP_004335417.1	TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; KEGG: sco:SCO4662 elongation factor Tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal
YP_004335418.1	TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; KEGG: ami:Amir_6617 translation elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal
YP_004335419.1	KEGG: sen:SACE_6840 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7
YP_004335420.1	KEGG: sen:SACE_6841 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23
YP_004335421.1	SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: sen:SACE_6853 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5
YP_004335422.1	TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; KEGG: sen:SACE_6854 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7
YP_004335423.1	KEGG: tcu:Tcur_1238 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335424.1	TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: mav:MAV_4507 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal
YP_004335425.1	KEGG: rop:ROP_16540 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0
YP_004335426.1	KEGG: amd:AMED_1772 hypothetical protein
YP_004335427.1	KEGG: sen:SACE_6857 hypothetical protein
YP_004335428.1	KEGG: sen:SACE_6858  secreted protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related
YP_004335429.1	KEGG: amd:AMED_1775 ABC transport system substrate-binding protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related
YP_004335430.1	KEGG: sen:SACE_6860 MCE family protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related
YP_004335431.1	KEGG: svi:Svir_03740 virulence factor Mce family protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related
YP_004335432.1	KEGG: amd:AMED_0605 ABC transport system substrate-binding protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related
YP_004335433.1	KEGG: sen:SACE_6863  Mce family protein; TIGRFAM: Mammalian cell entry; PFAM: Mammalian cell entry-related
YP_004335434.1	PFAM: Domain of unknown function DUF140; KEGG: req:REQ_36790 integral membrane protein yrbe4b
YP_004335435.1	PFAM: Domain of unknown function DUF140; KEGG: amd:AMED_1781 ABC transport system permease
YP_004335436.1	PFAM: ABC transporter-like; KEGG: svi:Svir_03690 ABC-type transport system involved in resistance to organic solvents, ATPase component; SMART: ATPase, AAA+ type, core
YP_004335437.1	PFAM: Protein of unknown function DUF2236; KEGG: rha:RHA1_ro03740 hypothetical protein
YP_004335438.1	KEGG: rop:ROP_pROB01-04060 ribonucleotide-diphosphate reductase subunit beta
YP_004335439.1	KEGG: rop:ROP_pROB01-04070  alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase
YP_004335440.1	KEGG: mva:Mvan_0011 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004335441.1	KEGG: mva:Mvan_0010 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004335442.1	KEGG: mmi:MMAR_3152 hypothetical protein
YP_004335445.1	KEGG: pzu:PHZ_c3113 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR
YP_004335446.1	KEGG: svi:Svir_23620 predicted acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase III
YP_004335447.1	KEGG: ami:Amir_6639 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1
YP_004335448.1	TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, C-terminal domain; Ribosomal protein L11, N-terminal domain; KEGG: req:REQ_36850 50S ribosomal protein L11 RplK; SMART: Ribosomal protein L11
YP_004335449.1	TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KEGG: sen:SACE_6872  transcription antitermination regulator; SMART: Transcription antitermination protein, NusG, N-terminal
YP_004335450.1	KEGG: sen:SACE_6873 protein translocation complex preprotein translocase subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein
YP_004335451.1	KEGG: ami:Amir_6643 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004335452.1	KEGG: nml:Namu_1442 hypothetical protein
YP_004335453.1	PFAM: MaoC-like dehydratase; KEGG: svi:Svir_03560 acyl dehydratase
YP_004335454.1	KEGG: ami:Amir_6647 hypothetical protein
YP_004335455.1	TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: nfa:nfa51190 50S ribosomal protein L33; PFAM: Ribosomal protein L33
YP_004335456.1	KEGG: fal:FRAAL4195 hypothetical protein
YP_004335457.1	KEGG: cbr:CBG04650 Hypothetical protein CBG04650
YP_004335458.1	KEGG: sna:Snas_1757 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal
YP_004335459.1	KEGG: tbi:Tbis_2431 cytochrome P450; PFAM: Cytochrome P450
YP_004335460.1	KEGG: amd:AMED_0996 long-chain acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004335463.1	KEGG: fal:FRAAL1555 TenA family transcriptional activator; PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C
YP_004335464.1	PFAM: Membrane protein of unknown function; KEGG: mil:ML5_0169 hypothetical protein
YP_004335465.1	PFAM: Beta-lactamase-related; KEGG: amd:AMED_6648 beta-lactamase class C
YP_004335466.1	PFAM: Small multidrug resistance protein; KEGG: fra:Francci3_2692 small multidrug resistance protein
YP_004335467.1	PFAM: Patatin/Phospholipase A2-related; KEGG: cre:CHLREDRAFT_174129 hypothetical protein
YP_004335468.1	PFAM: Integrase, catalytic core; KEGG: mpa:MAP3854 hypothetical protein
YP_004335470.1	KEGG: gob:Gobs_1832 peptidase S15
YP_004335471.1	KEGG: scb:SCAB_3531 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_004335472.1	PFAM: BAAT/Acyl-CoA thioester hydrolase C-terminal; KEGG: ccs:CCNA_00926 acyl CoA thioesterase
YP_004335473.1	KEGG: sen:SACE_6312 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_004335474.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_3403 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004335475.1	PFAM: Domain of unknown function DUF336; KEGG: nfa:nfa26450 hypothetical protein
YP_004335476.1	KEGG: rha:RHA1_ro04719 hypothetical protein
YP_004335477.1	KEGG: fri:FraEuI1c_4776 dual specificity protein phosphatase
YP_004335478.1	KEGG: amd:AMED_4233 HemK protein; TIGRFAM: Conserved hypothetical protein CHP03704, protein-(glutamine-N5) methyltransferase; Modification methylase HemK; PFAM: Methyltransferase small
YP_004335479.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rop:ROP_13230  TetR family transcriptional regulator
YP_004335480.1	KEGG: ami:Amir_3310 transcriptional regulator, TetR family; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal
YP_004335481.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lwe:lwe2751 3-ketoacyl-(acyl-carrier-protein) reductase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004335482.1	KEGG: amd:AMED_7834 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004335483.1	KEGG: rop:ROP_13220  acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004335484.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_0715 3-oxoacyl-[acyl-carrier-protein] reductase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004335485.1	KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335486.1	TIGRFAM: Thiolase; KEGG: rha:RHA1_ro05543 thiolase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal
YP_004335487.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cwo:Cwoe_4573 short-chain dehydrogenase/reductase SDR
YP_004335489.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: azc:AZC_2116 hydantoin utilization protein B
YP_004335490.1	KEGG: axy:AXYL_04686 hydantoinase/oxoprolinase protein; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004335491.1	KEGG: cai:Caci_5437 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004335492.1	PFAM: Luciferase-like, subgroup; KEGG: hsl:OE2918F alkanesulfonate monooxygenase
YP_004335493.1	KEGG: cag:Cagg_0832 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335494.1	PFAM: Peptidase S54, rhomboid domain; KEGG: rop:ROP_60150 hypothetical membrane protein
YP_004335495.1	KEGG: ami:Amir_3562 bile acid:sodium symporter
YP_004335496.1	KEGG: nfa:nfa20960  transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004335497.1	KEGG: bid:Bind_2090 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004335498.1	PFAM: Negative transcriptional regulator; KEGG: tbi:Tbis_2719 FMN-binding negative transcriptional regulator
YP_004335499.1	PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: kra:Krad_2352 MOSC domain containing protein
YP_004335500.1	PFAM: Haem peroxidase, plant/fungal/bacterial; TIGRFAM: Catalase-peroxidase haem; HAMAP: Catalase-peroxidase haem; KEGG: ami:Amir_4193 catalase/peroxidase HPI
YP_004335501.1	KEGG: fri:FraEuI1c_2008 ferric uptake regulator, Fur family; manually curated; PFAM: Ferric-uptake regulator
YP_004335503.1	PFAM: Protein of unknown function DUF81; KEGG: sgr:SGR_5215 hypothetical protein
YP_004335504.1	KEGG: cfl:Cfla_3568 hypothetical protein
YP_004335505.1	KEGG: cwo:Cwoe_5131 hypothetical protein
YP_004335506.1	KEGG: req:REQ_34720 lipase; manually curated; PFAM: Lipase, GDSL
YP_004335507.1	KEGG: pth:PTH_2401 hydrolase
YP_004335508.1	KEGG: nfa:nfa2260 hypothetical protein
YP_004335509.1	KEGG: sgr:SGR_3587 hypothetical protein
YP_004335510.1	KEGG: cai:Caci_8555 hypothetical protein
YP_004335512.1	PFAM: Transcription factor WhiB; KEGG: tcu:Tcur_0266 transcription factor WhiB
YP_004335514.1	KEGG: ami:Amir_0921 DNA segregation ATPase FtsK/SpoIIIE-related protein; PFAM: Cell divisionFtsK/SpoIIIE; SMART: ATPase, AAA+ type, core
YP_004335515.1	KEGG: ami:Amir_0922 hypothetical protein
YP_004335516.1	KEGG: sro:Sros_8661 hypothetical protein
YP_004335517.1	PFAM: Integrase, catalytic core, phage; KEGG: amd:AMED_6149 integrase
YP_004335518.1	KEGG: amd:AMED_0579 hypothetical protein; HAMAP: Protein of unknown function DUF520; PFAM: Protein of unknown function DUF520
YP_004335519.1	PFAM: Drug/metabolite transporter; KEGG: nda:Ndas_5358 protein of unknown function DUF6 transmembrane
YP_004335520.1	KEGG: fre:Franean1_1505 hypothetical protein
YP_004335521.1	PFAM: Transposase, IS4-like; KEGG: sen:SACE_4676 IS402-like transposase
YP_004335524.1	KEGG: bbe:BBR47_04660 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004335525.1	KEGG: ade:Adeh_3289 SARP family transcriptional regulator; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal
YP_004335526.1	KEGG: gbm:Gbem_0528 hypothetical protein
YP_004335527.1	TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: sro:Sros_7305 hypothetical protein
YP_004335528.1	PFAM: Protein of unknown function DUF1486; KEGG: mlo:mll8193 hypothetical protein
YP_004335529.1	KEGG: sen:SACE_6884 protease HtpX-like protein; HAMAP: Peptidase M48, protease HtpX, PFAM: Peptidase M48
YP_004335530.1	PFAM: Thioesterase superfamily; KEGG: fri:FraEuI1c_2920 thioesterase superfamily protein
YP_004335531.1	PFAM: Crotonase, core; KEGG: ami:Amir_6663 enoyl-CoA hydratase
YP_004335532.1	TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; KEGG: ami:Amir_6664 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal
YP_004335533.1	KEGG: rha:RHA1_ro02389 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004335534.1	KEGG: amd:AMED_0538 hypothetical protein
YP_004335535.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: amd:AMED_8588 OmpA family protein
YP_004335536.1	TIGRFAM: RarD protein; KEGG: ami:Amir_6667 RarD protein, DMT superfamily transporter
YP_004335537.1	KEGG: ami:Amir_6668 polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_004335538.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; HAMAP: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: sen:SACE_6889 NADH dehydrogenase subunit N
YP_004335539.1	TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: ami:Amir_6670 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004335540.1	TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: svi:Svir_03270 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal
YP_004335541.1	KEGG: sen:SACE_6892 NADH dehydrogenase subunit K; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_004335542.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: amd:AMED_0529 NADH dehydrogenase I subunit J
YP_004335543.1	PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: amd:AMED_0528 NADH dehydrogenase I subunit I
YP_004335544.1	KEGG: ami:Amir_6675 NADH dehydrogenase subunit H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H
YP_004335545.1	SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: ami:Amir_6676 NADH dehydrogenase subunit G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain
YP_004335546.1	SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: sen:SACE_6897 NADH dehydrogenase I chain F; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004335547.1	KEGG: ami:Amir_6678 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit
YP_004335548.1	PFAM: NADH-quinone oxidoreductase, subunit D; TIGRFAM: NADH dehydrogenase I, subunit D; HAMAP: NAD(P)H-quinone oxidoreductase subunit D/H; KEGG: amd:AMED_0523 NADH dehydrogenase I subunit D
YP_004335549.1	TIGRFAM: NADH dehydrogenase, subunit C; HAMAP: NADH dehydrogenase, subunit C; KEGG: svi:Svir_03180 NADH dehydrogenase subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit
YP_004335550.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: ami:Amir_6681 NADH dehydrogenase subunit B
YP_004335551.1	KEGG: sen:SACE_6902 NADH dehydrogenase I chain A; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
YP_004335552.1	KEGG: sen:SACE_6903 electron transfer oxidoreductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD dependent oxidoreductase
YP_004335553.1	TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: mav:MAV_4584 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase
YP_004335554.1	PFAM: Glycosyl transferase, group 1; KEGG: amd:AMED_0515 glycosyl transferase
YP_004335555.1	PFAM: Glycosyl transferase, group 1; KEGG: sen:SACE_6905 glycosyl transferase, group 1
YP_004335556.1	PFAM: Inositol monophosphatase; KEGG: amd:AMED_0513 myo-inositol-1(or 4)-monophosphatase
YP_004335557.1	KEGG: sen:SACE_6910 hypothetical protein
YP_004335558.1	TIGRFAM: Isochorismate synthase; KEGG: ami:Amir_6694 isochorismate synthase; PFAM: Chorismate binding, C-terminal
YP_004335559.1	KEGG: msm:MSMEG_3290 regulatory protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004335560.1	KEGG: mav:MAV_2744 MOSC domain-containing protein; manually curated; PFAM: MOSC, N-terminal beta barrel; Molybdenum cofactor sulfurase, C-terminal
YP_004335561.1	TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: gbr:Gbro_2776 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein
YP_004335562.1	PFAM: Protein of unknown function DUF1470; KEGG: msp:Mspyr1_42590 hypothetical protein
YP_004335563.1	PFAM: Protein of unknown function DUF427; KEGG: rop:ROP_13420 hypothetical protein
YP_004335564.1	KEGG: gob:Gobs_2979 transposase IS4 family protein; manually curated; PFAM: Transposase, IS4-like
YP_004335565.1	KEGG: amd:AMED_3893 phthalate 4,5-dioxygenase; PFAM: Molybdenum cofactor sulfurase, C-terminal; 3-alpha domain; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin
YP_004335566.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kfl:Kfla_1161 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004335567.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: bid:Bind_2018 4-oxalocrotonate tautomerase
YP_004335568.1	PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; TIGRFAM: Menaquinone biosynthesis protein MenD; KEGG: nfa:nfa51330 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD
YP_004335569.1	KEGG: ami:Amir_4825 aminotransferase class-III; PFAM: Aminotransferase class-III
YP_004335570.1	KEGG: sgr:SGR_985  ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004335571.1	PFAM: FeS cluster biogenesis; KEGG: cwo:Cwoe_3919 HesB/YadR/YfhF-family protein
YP_004335572.1	KEGG: sro:Sros_7952 2,5-didehydrogluconate reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004335573.1	KEGG: nml:Namu_4576 hypothetical protein
YP_004335574.1	KEGG: sen:SACE_3788 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain
YP_004335575.1	PFAM: ANTAR; KEGG: gob:Gobs_0560  PAS/PAC sensor protein
YP_004335576.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fre:Franean1_4388 GCN5-related N-acetyltransferase
YP_004335577.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_2406 transcriptional regulator, TetR family protein
YP_004335578.1	TIGRFAM: Naphthoate synthase; KEGG: ami:Amir_6701 naphthoate synthase; PFAM: Crotonase, core
YP_004335579.1	KEGG: sen:SACE_1100 PDZ/DHR/GLGF
YP_004335580.1	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: amd:AMED_1284 ATP-dependent helicase HrpB; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain
YP_004335581.1	KEGG: cfl:Cfla_2727 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335582.1	PFAM: SH3, type 3; KEGG: ami:Amir_6699 hypothetical protein
YP_004335583.1	KEGG: sen:SACE_6917 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase
YP_004335584.1	KEGG: ami:Amir_6707 hypothetical protein
YP_004335585.1	KEGG: ami:Amir_6709 DNA binding domain protein, excisionase; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: HTH transcriptional regulator, MerR
YP_004335586.1	KEGG: amd:AMED_0501 hypothetical protein
YP_004335587.1	KEGG: amd:AMED_0500 hypothetical protein
YP_004335588.1	KEGG: svi:Svir_02970 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein
YP_004335589.1	PFAM: Cytochrome c biogenesis protein; KEGG: sen:SACE_6931 cytochrome c biogenesis membrane protein
YP_004335590.1	PFAM: Cytochrome c assembly protein, transmembrane domain; KEGG: sen:SACE_6932 cytochrome c-type biogenesis protein
YP_004335591.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: sen:SACE_6933 thiol-disulfide isomerase/thioredoxin
YP_004335592.1	KEGG: gbr:Gbro_1035 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1
YP_004335593.1	PFAM: Aminotransferase class-III; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: nfa:nfa51600 glutamate-1-semialdehyde aminotransferase
YP_004335594.1	KEGG: gob:Gobs_4422 hypothetical protein
YP_004335595.1	KEGG: bcv:Bcav_0688 hypothetical protein
YP_004335596.1	PFAM: RDD; KEGG: sro:Sros_9150 membrane protein/domain-like protein
YP_004335597.1	KEGG: ami:Amir_6727 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase
YP_004335598.1	KEGG: ami:Amir_6728 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
YP_004335599.1	TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: ami:Amir_6729 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain
YP_004335600.1	TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: sen:SACE_6946 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain
YP_004335601.1	HAMAP: Transcriptional repressor, redox-sensing, Rex; PFAM: CoA-binding; Rex DNA-binding, C-terminal; KEGG: amd:AMED_0479 AT-rich DNA-binding protein; SMART: CoA-binding
YP_004335602.1	KEGG: amd:AMED_7496 fasciclin repeat-containing protein; PFAM: FAS1 domain; SMART: FAS1 domain
YP_004335603.1	PFAM: Oxidoreductase, molybdopterin-binding domain; Moybdenum cofactor oxidoreductase, dimerisation; KEGG: ami:Amir_6733 oxidoreductase molybdopterin binding
YP_004335604.1	PFAM: Glutaredoxin-like; KEGG: svi:Svir_02830 glutaredoxin-like domain (DUF836)
YP_004335605.1	KEGG: sen:SACE_6950  fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335606.1	KEGG: ami:Amir_6736 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004335607.1	KEGG: ami:Amir_6737 hypothetical protein
YP_004335608.1	KEGG: svi:Svir_02790 HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase
YP_004335609.1	KEGG: ami:Amir_6739 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004335610.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ami:Amir_6740 NAD-dependent epimerase/dehydratase
YP_004335611.1	PFAM: Domain of unknown function DUF1713, mitochondria; KEGG: sen:SACE_6957 hypothetical protein
YP_004335612.1	KEGG: svi:Svir_02760 DNA-binding protein, excisionase; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory
YP_004335613.1	TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: svi:Svir_02750 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_004335614.1	KEGG: amd:AMED_0465 aromatic compounds degradation protein PaaI
YP_004335615.1	KEGG: saq:Sare_0409 proline dehydrogenase; PFAM: Proline dehydrogenase
YP_004335616.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: ami:Amir_6746 xylose isomerase domain protein TIM barrel
YP_004335617.1	KEGG: sen:SACE_6963 hypothetical protein
YP_004335618.1	PFAM: Ppx/GppA phosphatase; KEGG: ami:Amir_6748 Ppx/GppA phosphatase
YP_004335619.1	KEGG: amd:AMED_0460 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335620.1	KEGG: sen:SACE_6966  two-component system sensor kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004335621.1	KEGG: svi:Svir_02670 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; SMART: Histidine phosphatase superfamily, clade-1
YP_004335622.1	KEGG: svi:Svir_14940 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004335623.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gob:Gobs_0101 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004335624.1	KEGG: kra:Krad_3419  lipoprotein
YP_004335625.1	PFAM: Protein of unknown function DUF2596; KEGG: svi:Svir_02660 protein of unknown function (DUF2596)
YP_004335626.1	KEGG: ami:Amir_6757 UDP-N-acetylglucosamine; TIGRFAM: Mycothiol biosynthesis protein, MshA; PFAM: Glycosyl transferase, group 1
YP_004335627.1	KEGG: sen:SACE_0599 HSP90 family heat shock protein
YP_004335628.1	KEGG: amd:AMED_8485 hypothetical protein
YP_004335629.1	PFAM: Glutamine cyclotransferase; KEGG: gob:Gobs_3145 glutamine cyclotransferase
YP_004335630.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sen:SACE_0596 hypothetical protein
YP_004335631.1	KEGG: ami:Amir_0482 hypothetical protein
YP_004335632.1	KEGG: svi:Svir_34040 cold-shock DNA-binding protein family; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004335633.1	KEGG: amd:AMED_1463 fatty-acyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase
YP_004335634.1	TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: sma:SAV_2294 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal
YP_004335635.1	KEGG: ami:Amir_3551 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin
YP_004335636.1	PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: sen:SACE_0573 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004335637.1	KEGG: rop:ROP_34570  molybdate ABC transporter permease; TIGRFAM: NifC-like ABC-type porter; Molybdate ABC transporter, permease; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004335638.1	KEGG: kra:Krad_4177 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_004335639.1	KEGG: sen:SACE_0570 molybdate ABC molybdate transporter substrate-binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, MerR
YP_004335640.1	manually curated; KEGG: fri:FraEuI1c_3837 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004335641.1	TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM; Molybdenum cofactor synthesis C-terminal; KEGG: amd:AMED_8516 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB
YP_004335642.1	PFAM: ThiamineS; KEGG: mjl:Mjls_4861 thiamineS protein
YP_004335643.1	PFAM: Peptidase S58, DmpA; KEGG: sco:SCO3193 hypothetical protein
YP_004335644.1	KEGG: amd:AMED_7888 hypothetical protein
YP_004335645.1	KEGG: sro:Sros_5448 hypothetical protein
YP_004335646.1	KEGG: sro:Sros_2243 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335647.1	KEGG: sro:Sros_2242 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain
YP_004335648.1	KEGG: sma:SAV_6344 hypothetical protein
YP_004335650.1	PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: kfl:Kfla_5825 superoxide dismutase
YP_004335651.1	PFAM: PASTA; KEGG: fri:FraEuI1c_0501 serine/threonine protein kinase with PASTA sensor(s)
YP_004335652.1	KEGG: amd:AMED_7281 hypothetical protein
YP_004335653.1	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: gob:Gobs_4922 carbon monoxide dehydrogenase subunit G
YP_004335654.1	KEGG: sen:SACE_0538 carbon monoxide dehydrogenase medium subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004335655.1	KEGG: amd:AMED_1871 carbon-monoxide dehydrogenase large subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004335656.1	KEGG: svi:Svir_13110 aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004335657.1	PFAM: Glycosyl transferase, family 2; KEGG: gob:Gobs_4928 family 2 glycosyl transferase
YP_004335658.1	PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: nfa:nfa26840 hypothetical protein
YP_004335659.1	PFAM: Creatininase; KEGG: rop:ROP_61350 creatininase protein
YP_004335660.1	KEGG: fal:FRAAL4319 hypothetical protein; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
YP_004335661.1	KEGG: rha:RHA1_ro06072 coenzyme synthesis protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB
YP_004335662.1	KEGG: nfa:nfa34420 hypothetical protein
YP_004335664.1	PFAM: Protein of unknown function DUF952; GCN5-related N-acetyltransferase (GNAT) domain; KEGG: gob:Gobs_3986 hypothetical protein
YP_004335665.1	KEGG: fri:FraEuI1c_5323 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004335666.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rop:ROP_24720  oxidoreductase; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004335667.1	KEGG: mil:ML5_4663 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004335668.1	KEGG: amd:AMED_5932 hypothetical protein
YP_004335669.1	PFAM: ATPase-like, ATP-binding domain; KEGG: rop:ROP_04120  two-component histidine kinase
YP_004335670.1	KEGG: nml:Namu_0487 LuxR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004335671.1	PFAM: Glycoside hydrolase, family 16; KEGG: mil:ML5_5027 glycoside hydrolase 16
YP_004335672.1	PFAM: Polysaccharide deacetylase; KEGG: amd:AMED_1392 predicted xylanase/chitin deacetylase
YP_004335674.1	PFAM: Glycosyl transferase, family 2; KEGG: art:Arth_3658 glycosyl transferase protein
YP_004335676.1	PFAM: Peptidoglycan binding-like
YP_004335677.1	KEGG: gob:Gobs_4663 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004335678.1	KEGG: gob:Gobs_4664 (2Fe-2S)-binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004335679.1	KEGG: gob:Gobs_4665 aldehyde oxidase/xanthine dehydrogenase; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004335680.1	PFAM: Phosphomethylpyrimidine kinase type-1; manually curated; KEGG: ami:Amir_0424 phosphomethylpyrimidine kinase; TIGRFAM: Phosphomethylpyrimidine kinase type-2
YP_004335681.1	KEGG: mav:MAV_0120 hypothetical protein
YP_004335682.1	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ami:Amir_4048 protein of unknown function DUF214
YP_004335683.1	PFAM: ABC transporter-like; KEGG: kfl:Kfla_5714 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004335685.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: ami:Amir_4000 histidine kinase
YP_004335686.1	KEGG: sro:Sros_7377 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004335687.1	KEGG: amd:AMED_8570  serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF
YP_004335688.1	PFAM: Formylmethionine deformylase; TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: sen:SACE_0514  polypeptide deformylase
YP_004335689.1	KEGG: gbr:Gbro_0662 hypothetical protein
YP_004335690.1	KEGG: amd:AMED_8566 hypothetical protein
YP_004335691.1	PFAM: ATPase, AAA-type, core; KEGG: ami:Amir_0432 microtubule-severing ATPase; SMART: ATPase, AAA+ type, core
YP_004335692.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: amd:AMED_8564 phosphatidylserine synthase
YP_004335693.1	PFAM: Phosphatidylserine decarboxylase-related; TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase-related protein; KEGG: amd:AMED_8563 phosphatidylserine decarboxylase
YP_004335694.1	TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; KEGG: ami:Amir_0438 molybdenum cofactor synthesis domain protein; SMART: Molybdopterin binding
YP_004335695.1	KEGG: ami:Amir_0440 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004335696.1	TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: nml:Namu_4827 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_004335697.1	KEGG: rop:ROP_43410  DeoR family transcriptional regulator
YP_004335698.1	TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: rop:ROP_43400 hypothetical protein
YP_004335699.1	PFAM: Low temperature requirement A; KEGG: rha:RHA1_ro04267 low temperature requirement protein A
YP_004335700.1	PFAM: Phage shock domain; KEGG: ami:Amir_0450 phage shock protein C, PspC
YP_004335703.1	KEGG: sen:SACE_0545 ATP-dependent DNA helicase; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004335704.1	KEGG: amd:AMED_2491 histidine kinase-like ATPase containing nitrate/nitrite sensor domain; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain
YP_004335705.1	KEGG: svi:Svir_24600 hypothetical protein; PFAM: Dynein light chain-related; SMART: Dynein light chain-related
YP_004335706.1	PFAM: Protein of unknown function DUF742; KEGG: sen:SACE_0559 hypothetical protein
YP_004335707.1	PFAM: Uncharacterised protein family, ATP binding; KEGG: ami:Amir_0461 protein of unknown function ATP binding
YP_004335708.1	manually curated; KEGG: tcu:Tcur_2634 hypothetical protein
YP_004335709.1	KEGG: sen:SACE_0561 hypothetical protein
YP_004335710.1	KEGG: sen:SACE_0562 hypothetical protein
YP_004335711.1	KEGG: amd:AMED_1865 hypothetical protein
YP_004335712.1	PFAM: Transglycosylase-like; Peptidoglycan-binding lysin domain; KEGG: amd:AMED_8518 secreted protein
YP_004335713.1	KEGG: sen:SACE_0564 molybdenum cofactor biosynthesis protein; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain
YP_004335714.1	TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: ami:Amir_0467 molybdenum cofactor synthesis domain protein; SMART: Molybdopterin binding
YP_004335715.1	PFAM: Molybdopterin biosynthesis MoaE; KEGG: ami:Amir_0468 molybdopterin biosynthesis MoaE protein
YP_004335716.1	KEGG: rsa:RSal33209_2532 transglycosylase protein; PFAM: Transglycosylase-like; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_004335717.1	KEGG: rop:ROP_50460 hypothetical protein; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core
YP_004335718.1	KEGG: svi:Svir_13090 protein containing von Willebrand factor type A (vWA) domain protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A
YP_004335719.1	PFAM: XdhC- CoxI; KEGG: gob:Gobs_4952 hypothetical protein
YP_004335720.1	KEGG: nca:Noca_1906 hypothetical protein; PFAM: GerMN domain; Spore germination protein-like Gmad2, bacteria; SMART: GerMN domain
YP_004335721.1	KEGG: gob:Gobs_2268 hypothetical protein
YP_004335722.1	KEGG: sen:SACE_0508 thiazole synthase; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis
YP_004335723.1	KEGG: sro:Sros_2782  thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS
YP_004335724.1	KEGG: sen:SACE_0506 amino acid oxidase flavoprotein ThiO, TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase
YP_004335725.1	PFAM: Thiamine monophosphate synthase; TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; KEGG: amd:AMED_8579 thiamine-phosphate pyrophosphorylase
YP_004335726.1	KEGG: gob:Gobs_1366 hypothetical protein
YP_004335732.1	KEGG: eba:ebA7261 hypothetical protein
YP_004335743.1	KEGG: car:cauri_1937 hypothetical protein
YP_004335751.1	KEGG: cyp:PCC8801_3065 hypothetical protein
YP_004335752.1	KEGG: cyp:PCC8801_3064 hypothetical protein
YP_004335756.1	KEGG: kfl:Kfla_3342 hypothetical protein
YP_004335758.1	PFAM: Cell divisionFtsK/SpoIIIE; KEGG: fre:Franean1_1448 cell divisionFtsK/SpoIIIE
YP_004335759.1	KEGG: kfl:Kfla_0389 hypothetical protein
YP_004335760.1	KEGG: scb:SCAB_48371 hypothetical protein
YP_004335762.1	PFAM: Collagen triple helix repeat; KEGG: mno:Mnod_2610 collagen triple helix repeat protein
YP_004335763.1	KEGG: cwo:Cwoe_0556 carbohydrate-binding CenC domain protein
YP_004335764.1	KEGG: mva:Mvan_3608 hypothetical protein
YP_004335765.1	KEGG: stp:Strop_1047 hypothetical protein
YP_004335766.1	KEGG: scb:SCAB_48281 phage terminase
YP_004335767.1	KEGG: cef:CE0842 hypothetical protein
YP_004335768.1	PFAM: Peptidase S14, ClpP; KEGG: ppr:PBPRB1287 hypothetical protein
YP_004335769.1	KEGG: lxx:Lxx03890 hypothetical protein
YP_004335770.1	KEGG: lxx:Lxx03880 hypothetical protein
YP_004335771.1	KEGG: mav:MAV_0808 hypothetical protein
YP_004335780.1	KEGG: srt:Srot_0075 hypothetical protein
YP_004335784.1	KEGG: rer:RER_25240 hypothetical protein
YP_004335785.1	KEGG: dwi:Dwil_GK24884 GK24884 gene product from transcript GK24884-RA
YP_004335790.1	KEGG: sca:Sca_1292a  glycine-rich cell wall surface anchor protein
YP_004335792.1	KEGG: mar:MAE_16090 hypothetical protein
YP_004335797.1	PFAM: HTH transcriptional regulator, MerR
YP_004335798.1	PFAM: Integrase, catalytic core, phage; KEGG: nfa:nfa15600  phage integrase
YP_004335799.1	KEGG: stp:Strop_2956 hypothetical protein
YP_004335800.1	PFAM: Lipase, GDSL; KEGG: svi:Svir_34730 lysophospholipase L1-like esterase
YP_004335801.1	KEGG: sen:SACE_0486 ectoine hydroxylase; TIGRFAM: Ectoine hydroxylase; PFAM: Phytanoyl-CoA dioxygenase
YP_004335802.1	HAMAP: L-ectoine synthase; KEGG: svi:Svir_34790 L-ectoine synthase; PFAM: Ectoine synthase
YP_004335803.1	TIGRFAM: Diaminobutyrate--2-oxoglutarate aminotransferase; Diaminobutyrate-2-oxoglutarate transaminase; KEGG: amd:AMED_8596 diaminobutyrate-2-oxoglutarate transaminase; PFAM: Aminotransferase class-III
YP_004335804.1	TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; KEGG: sco:SCO1864 acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain
YP_004335805.1	KEGG: mno:Mnod_3429 FAD dependent oxidoreductase; PFAM: Lycopene cyclase-type, FAD-binding
YP_004335806.1	PFAM: Protein of unknown function DUF307; KEGG: amd:AMED_8507 hypothetical protein
YP_004335807.1	PFAM: Protein of unknown function DUF347; KEGG: cai:Caci_8898 protein of unknown function DUF347
YP_004335809.1	KEGG: fri:FraEuI1c_6484 protein of unknown function DUF2945
YP_004335810.1	PFAM: Protein of unknown function DUF427; KEGG: msp:Mspyr1_50770 hypothetical protein
YP_004335811.1	PFAM: Phosphate transporter; KEGG: cai:Caci_5449 phosphate transporter
YP_004335812.1	KEGG: cai:Caci_5448 hypothetical protein
YP_004335813.1	KEGG: fal:FRAAL1463 hypothetical protein
YP_004335814.1	KEGG: sma:SAV_7212 FMNH2-utilizing oxygenase
YP_004335815.1	TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: sma:SAV_7213 FMNH2-utilizing oxygenase
YP_004335816.1	PFAM: NADPH-dependent FMN reductase; KEGG: fri:FraEuI1c_0040 NADPH-dependent FMN reductase
YP_004335817.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: gob:Gobs_2217 alcohol dehydrogenase zinc-binding domain-containing protein; SMART: Polyketide synthase, enoylreductase
YP_004335818.1	TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: kfl:Kfla_5077 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding
YP_004335819.1	PFAM: Integrase, catalytic core; KEGG: mpa:MAP3854 hypothetical protein
YP_004335820.1	KEGG: saq:Sare_2786 hypothetical protein
YP_004335821.1	KEGG: fal:FRAAL4345 hypothetical protein
YP_004335822.1	KEGG: mau:Micau_3015 sigma-70 family RNA polymerase; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004335823.1	KEGG: scl:sce1195 hypothetical protein
YP_004335824.1	KEGG: cfl:Cfla_2394 cell division FtsK/SpoIIIE
YP_004335825.1	KEGG: nca:Noca_3309 peroxiredoxins-like
YP_004335826.1	KEGG: nfa:nfa25940 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03083, actinobacterial-type; PFAM: FAD dependent oxidoreductase
YP_004335827.1	KEGG: mau:Micau_3867 transcriptional activator domain-containing protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal
YP_004335828.1	KEGG: gob:Gobs_2919 integral membrane protein TerC; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC
YP_004335829.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aau:AAur_1135  glyoxalase protein
YP_004335830.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: amd:AMED_6110 transposase
YP_004335831.1	PFAM: Phospholipase/carboxylesterase; KEGG: nca:Noca_2054 phospholipase/carboxylesterase
YP_004335832.1	manually curated; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: sgr:SGR_2706 transcriptional regulator; SMART: HTH transcriptional regulator, GntR
YP_004335833.1	KEGG: sma:SAV_3428 hypothetical protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004335834.1	PFAM: Methyltransferase type 11; KEGG: pla:Plav_2291 hypothetical protein
YP_004335835.1	PFAM: Amidase; KEGG: svi:Svir_03450 amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
YP_004335836.1	PFAM: Glycosyl transferase, group 1; KEGG: mva:Mvan_5248 glycosyl transferase, group 1
YP_004335838.1	KEGG: cai:Caci_5167 K potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter
YP_004335839.1	KEGG: nml:Namu_1186 hypothetical protein
YP_004335840.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_C0598  carboxymuconolactone decarboxylase
YP_004335841.1	KEGG: mau:Micau_3319 hypothetical protein
YP_004335842.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_2033 MFS transporter, multidrug efflux transporter
YP_004335843.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: reu:Reut_C6321 zinc-containing alcohol dehydrogenase superfamily protein; SMART: Polyketide synthase, enoylreductase
YP_004335846.1	KEGG: amd:AMED_7729 cytochrome c oxidase subunit I; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I
YP_004335849.1	KEGG: sen:SACE_5023 hypothetical protein
YP_004335850.1	KEGG: sen:SACE_5022 regulator
YP_004335851.1	PFAM: YkuD domain; KEGG: rha:RHA1_ro02802 lipoprotein
YP_004335852.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: brh:RBRH_02667 2-nitropropane dioxygenase
YP_004335853.1	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sco:SCO5759 hypothetical protein
YP_004335854.1	SMART: HTH transcriptional regulator, ArsR; KEGG: fal:FRAAL3030 ArsR family transcriptional regulator
YP_004335855.1	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: sna:Snas_3694 bifunctional deaminase-reductase domain-containing protein
YP_004335856.1	KEGG: gob:Gobs_3845 membrane protein
YP_004335857.1	KEGG: amd:AMED_3417 hypothetical protein
YP_004335858.1	KEGG: amd:AMED_8476 heme oxygenase; PFAM: Haem oxygenase-like
YP_004335859.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: fal:FRAAL2958  gamma hydroxybutyrate dehydrogenase
YP_004335861.1	KEGG: gob:Gobs_1538 hypothetical protein
YP_004335862.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_4335 TetR family transcriptional regulator
YP_004335863.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bcv:Bcav_3063 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004335864.1	KEGG: rop:ROP_67110  DeoR family transcriptional regulator
YP_004335865.1	PFAM: Amidohydrolase 1; KEGG: amd:AMED_2548 metal-dependent hydrolase
YP_004335866.1	KEGG: nml:Namu_4086 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004335868.1	KEGG: bcv:Bcav_0752 hypothetical protein
YP_004335869.1	KEGG: nml:Namu_2612 cytochrome P450; PFAM: Cytochrome P450; Flavodoxin/nitric oxide synthase; FAD-binding, type 1; Oxidoreductase FAD/NAD(P)-binding
YP_004335870.1	KEGG: mil:ML5_2753 hypothetical protein
YP_004335871.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1773 Rieske (2Fe-2S) domain-containing protein
YP_004335872.1	PFAM: Domain of unknown function DUF1228; KEGG: rha:RHA1_ro00806 hypothetical protein
YP_004335873.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cai:Caci_8225 transcriptional regulator, TetR family
YP_004335874.1	KEGG: cai:Caci_5554 hypothetical protein
YP_004335875.1	PFAM: Luciferase-like, subgroup; KEGG: kfl:Kfla_6396 luciferase-like monooxygenase
YP_004335876.1	KEGG: chu:CHU_0455 pectate lyase-related protein
YP_004335878.1	KEGG: mav:MAV_3660 multimeric flavodoxin WrbA
YP_004335879.1	PFAM: Cation/H+ exchanger; KEGG: mjl:Mjls_4930 sodium/hydrogen exchanger
YP_004335880.1	KEGG: bac:BamMC406_4417 hypothetical protein
YP_004335881.1	PFAM: Cytochrome P450; KEGG: tbi:Tbis_2746 cytochrome P450
YP_004335882.1	KEGG: rop:ROP_pROB01-03170 aminotransferase; PFAM: Aminotransferase class-III
YP_004335884.1	PFAM: Cupin 2, conserved barrel; KEGG: cai:Caci_3556 cupin 2 conserved barrel domain protein
YP_004335885.1	KEGG: rxy:Rxyl_1852 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004335886.1	KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase
YP_004335887.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: rxy:Rxyl_1850 hydantoinase/oxoprolinase
YP_004335888.1	PFAM: Acetone carboxylase, gamma subunit-related; KEGG: rxy:Rxyl_1849  subunit of acetophenone carboxylase
YP_004335889.1	KEGG: eba:c1A102 subunit of acetophenone carboxylase; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004335890.1	PFAM: Hydantoinase B/oxoprolinase; KEGG: rxy:Rxyl_1847 hydantoinase B/oxoprolinase
YP_004335892.1	KEGG: rxy:Rxyl_1737 thiolase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal
YP_004335893.1	KEGG: hoh:Hoch_2125 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335894.1	PFAM: Polysaccharide deacetylase; KEGG: fra:Francci3_0165 polysaccharide deacetylase
YP_004335895.1	PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: nml:Namu_0604 oxidoreductase molybdopterin binding
YP_004335896.1	PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; KEGG: nml:Namu_0605 oxidoreductase FAD-binding domain-containing protein
YP_004335897.1	KEGG: tpr:Tpau_4141 carboxylesterase; PFAM: Carboxylesterase, type B
YP_004335898.1	KEGG: rer:RER_32400 TetR family transcriptional regulator
YP_004335899.1	PFAM: Glycoside hydrolase 15-related; KEGG: amd:AMED_3900 glucoamylase-like glycosyl hydrolase
YP_004335900.1	KEGG: sma:SAV_7048 cation efflux system protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004335901.1	PFAM: AMP-dependent synthetase/ligase; KEGG: fre:Franean1_6630 hypothetical protein
YP_004335902.1	KEGG: fri:FraEuI1c_4435 aminoglycoside phosphotransferase; PFAM: Aminoglycoside phosphotransferase; SMART: CHK kinase-like
YP_004335903.1	PFAM: Protein of unknown function DUF664; KEGG: sco:SCO5093 mini-circle protein
YP_004335904.1	PFAM: Beta-lactamase-related; KEGG: nml:Namu_3462 beta-lactamase
YP_004335905.1	KEGG: met:M446_5697 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin; Carbon monoxide dehydrogenase subunit G
YP_004335906.1	KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding
YP_004335907.1	PFAM: Crotonase, core; KEGG: reu:Reut_C5886 enoyl-CoA hydratase/isomerase
YP_004335908.1	KEGG: gka:GKP21 molybdopterin binding oxidoreductase large subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004335909.1	KEGG: gmc:GY4MC1_2421 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase
YP_004335910.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: fre:Franean1_3145 PadR-like family transcriptional regulator
YP_004335911.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: sco:SCO0154 hypothetical protein
YP_004335912.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fal:FRAAL1635 TetR family transcriptional regulator
YP_004335913.1	KEGG: tcu:Tcur_0280 glycoside hydrolase 13 domain-containing protein
YP_004335914.1	KEGG: rha:RHA1_ro08581 hypothetical protein
YP_004335915.1	KEGG: mau:Micau_3949 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004335916.1	KEGG: sen:SACE_3341 glycosyl transferase protein; manually curated; PFAM: Glycosyl transferase, family 2
YP_004335917.1	PFAM: Protein of unknown function DUF2064; KEGG: saq:Sare_2754 hypothetical protein
YP_004335918.1	PFAM: Methyltransferase type 12; KEGG: sen:SACE_3339  SAM-dependent methyltransferase
YP_004335920.1	KEGG: sen:SACE_3344 two-component system sensor kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004335921.1	KEGG: sen:SACE_3343 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335922.1	KEGG: mjl:Mjls_0708 oxidoreductase, molybdopterin binding; manually curated; PFAM: Oxidoreductase, molybdopterin-binding domain
YP_004335923.1	KEGG: mjl:Mjls_0707 hypothetical protein
YP_004335924.1	KEGG: amd:AMED_8323 hypothetical protein
YP_004335925.1	KEGG: sti:Sthe_2520 amidase; PFAM: Amidase
YP_004335927.1	KEGG: aau:AAur_pTC20145 nitrile hydratase b-subunit
YP_004335928.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: aau:AAur_pTC20146 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004335929.1	KEGG: aau:AAur_pTC20147 cobalt-containing nitrile hydratase beta subunit
YP_004335930.1	PFAM: Extracellular ligand-binding receptor; KEGG: aau:AAur_pTC20138  branched-chain amino acid ABC transporter
YP_004335931.1	KEGG: rer:RER_59200 nitrile hydratase regulator 2; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004335932.1	KEGG: mmi:MMAR_3279 hypothetical protein
YP_004335933.1	KEGG: msm:MSMEG_6684 agarase
YP_004335934.1	KEGG: rer:RER_06600 hypothetical protein
YP_004335935.1	PFAM: Integrase, catalytic core; KEGG: sen:SACE_5133 IS630 family transposase
YP_004335937.1	PFAM: 4Fe-4S binding domain; KEGG: mjl:Mjls_5668 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_004335938.1	PFAM: ABC transporter-like; KEGG: msm:MSMEG_1234 taurine import ATP-binding protein TauB; SMART: ATPase, AAA+ type, core
YP_004335939.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro06849 ABC transporter, permease
YP_004335940.1	KEGG: msm:MSMEG_1232 ABC transporter substrate-binding protein
YP_004335941.1	PFAM: 4Fe-4S binding domain; KEGG: mab:MAB_2240  ferredoxin
YP_004335942.1	KEGG: sco:SCO0610 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR
YP_004335943.1	KEGG: sme:SMa1501 hypothetical protein
YP_004335944.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: bbt:BBta_5144 hypothetical protein
YP_004335945.1	PFAM: Helix-turn-helix, HxlR type; KEGG: sen:SACE_3001 hypothetical protein
YP_004335946.1	KEGG: amd:AMED_7697 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004335947.1	KEGG: cai:Caci_7438 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain
YP_004335948.1	KEGG: fri:FraEuI1c_4109 hydrolase CocE/NonD family protein; TIGRFAM: CocE/NonD hydrolase; SMART: Peptidase S15/CocE/NonD, C-terminal
YP_004335949.1	PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; KEGG: rha:RHA1_ro06691 transcriptional regulator
YP_004335950.1	KEGG: rha:RHA1_ro08137 cyclohexanone monooxygenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004335951.1	KEGG: rha:RHA1_ro11053 N-acyl homoserine lactonase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004335952.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rha:RHA1_ro04805 major facilitator superfamily multidrug resistance protein
YP_004335953.1	PFAM: Peptidase M48; KEGG: nda:Ndas_0289 peptidase M48 Ste24p
YP_004335954.1	KEGG: amd:AMED_3902 integral membrane protein
YP_004335955.1	KEGG: sen:SACE_2415 integral membrane protein
YP_004335956.1	KEGG: spu:579074 similar to HLA-B-associated transcript 3
YP_004335958.1	KEGG: nfa:nfa28330  transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004335959.1	PFAM: Amidase; KEGG: nfa:nfa28320  amidase
YP_004335960.1	PFAM: Ribonuclease BN-related; KEGG: sco:SCO7414 integral membrane protein
YP_004335961.1	TIGRFAM: Conserved hypothetical protein CHP03086; Conserved hypothetical protein CHP03083, actinobacterial-type; KEGG: scb:SCAB_5731 hypothetical protein
YP_004335962.1	KEGG: nml:Namu_0665 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Monooxygenase, FAD-binding
YP_004335963.1	KEGG: nml:Namu_0666 hypothetical protein
YP_004335964.1	PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; KEGG: nda:Ndas_3497 sigma54 specific transcriptional regulator, Fis family
YP_004335965.1	PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: ami:Amir_1129 NAD-glutamate dehydrogenase
YP_004335966.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: amd:AMED_3802 short-chain dehydrogenase
YP_004335967.1	KEGG: sco:SCO0891 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004335968.1	KEGG: fri:FraEuI1c_2782  F420-dependent oxidoreductase
YP_004335969.1	KEGG: mva:Mvan_0652 regulatory protein
YP_004335970.1	KEGG: sma:SAV_1188 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004335971.1	KEGG: mva:Mvan_0647 nitrile hydratase
YP_004335972.1	TIGRFAM: Nitrile hydratase, alpha subunit; KEGG: mva:Mvan_0648 nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase, alpha subunit/Thiocyanate hydrolase, gamma subunit
YP_004335973.1	KEGG: mva:Mvan_0649 hypothetical protein
YP_004335974.1	PFAM: Acetamidase/Formamidase; KEGG: fri:FraEuI1c_0390 acetamidase/formamidase
YP_004335975.1	KEGG: mva:Mvan_0650 hypothetical protein
YP_004335976.1	PFAM: Cupin 2, conserved barrel; KEGG: sti:Sthe_2323 cupin 2 conserved barrel domain protein
YP_004335977.1	KEGG: nda:Ndas_0789 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; HTH transcriptional regulator, ArsR; SMART: Transcription regulator AsnC-type
YP_004335978.1	PFAM: Aminotransferase, class I/classII; KEGG: rsc:RCFBP_20493 transcriptional regulators containing a DNA-binding hth domain and an aminotransferase domain transcriptional regulator protein
YP_004335979.1	KEGG: rsa:RSal33209_0658 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII
YP_004335980.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pjd:Pjdr2_5222 extracellular solute-binding protein family 5
YP_004335981.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sti:Sthe_3428 binding-protein-dependent transport systems inner membrane component
YP_004335982.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5515 ABC transporter, permease
YP_004335983.1	KEGG: avi:Avi_1654 Zn-dependent hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004335984.1	PFAM: Amidohydrolase 1; KEGG: bpt:Bpet0100 imidazolonepropionase
YP_004335985.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: ret:RHE_CH03099 oligopeptide ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004335986.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dau:Daud_0389 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004335987.1	KEGG: ami:Amir_1933 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004335988.1	KEGG: amd:AMED_5727 two-component system histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain
YP_004335990.1	KEGG: svi:Svir_08000 hypothetical protein
YP_004335991.1	KEGG: rxy:Rxyl_2722 hypothetical protein
YP_004335993.1	KEGG: fra:Francci3_1987 mandelate racemase/muconate lactonizing enzyme; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004335994.1	KEGG: sco:SCO7412 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004335995.1	KEGG: rxy:Rxyl_2720 FAD linked oxidase-like protein; PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain
YP_004335996.1	KEGG: sco:SCO7413 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004335997.1	PFAM: Glycoside hydrolase 15-related; KEGG: rha:RHA1_ro08311 glycosyl hydrolase
YP_004335998.1	KEGG: tcu:Tcur_1124 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004335999.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: mpa:MAP2446c hypothetical protein
YP_004336000.1	PFAM: Protein of unknown function DUF1486; KEGG: pna:Pnap_4728 hypothetical protein
YP_004336001.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: nca:Noca_0210 alpha/beta hydrolase fold
YP_004336002.1	PFAM: Dienelactone hydrolase; KEGG: rpd:RPD_3874 dienelactone hydrolase
YP_004336003.1	KEGG: fre:Franean1_4746 3-(2,3-dihydroxyphenyl)propionate dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
YP_004336004.1	PFAM: Luciferase-like, subgroup; KEGG: ara:Arad_7171 luciferase
YP_004336005.1	KEGG: mjl:Mjls_1672 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004336006.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: amd:AMED_6110 transposase
YP_004336007.1	KEGG: tpr:Tpau_4273 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004336008.1	PFAM: Integrase, catalytic core; KEGG: rer:pREL1_0265 transposase
YP_004336009.1	KEGG: msp:Mspyr1_54050 transcriptional regulator
YP_004336010.1	PFAM: Integrase, catalytic core, phage; KEGG: msp:Mspyr1_54040 site-specific recombinase XerD
YP_004336011.1	PFAM: Integrase, catalytic core; KEGG: mtb:TBMG_03231 transposase
YP_004336012.1	PFAM: Transposase, mutator type; KEGG: gob:Gobs_2905 transposase mutator type
YP_004336013.1	PFAM: Amidase; KEGG: rme:Rmet_3556 amidase
YP_004336014.1	TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: rxy:Rxyl_1578 3-oxoadipate enol-lactonase; PFAM: Alpha/beta hydrolase fold-1
YP_004336015.1	KEGG: rha:RHA1_ro02523 hypothetical protein
YP_004336016.1	TIGRFAM: Cytidyltransferase-related; KEGG: nml:Namu_2214 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase
YP_004336018.1	KEGG: rxy:Rxyl_2822 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004336019.1	manually curated; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: bts:Btus_2062 alcohol dehydrogenase GroES domain protein; SMART: Polyketide synthase, enoylreductase
YP_004336020.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_0215 methane/phenol/toluene hydroxylase
YP_004336021.1	PFAM: Monooxygenase component MmoB/DmpM; KEGG: fra:Francci3_0214 monooxygenase component MmoB/DmpM
YP_004336022.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: fra:Francci3_0213 Rieske (2Fe-2S) protein
YP_004336023.1	PFAM: Toluene-4-monooxygenase system B; KEGG: bbt:BBta_1597 toluene-4-monooxygenase system protein B
YP_004336024.1	KEGG: bts:Btus_2069 methane/phenol/toluene hydroxylase; PFAM: Methane/phenol/toluene hydroxylase; YHS
YP_004336025.1	TIGRFAM: Muconolactone delta-isomerase; KEGG: rer:RER_54210 muconolactone isomerase; PFAM: Muconolactone delta-isomerase
YP_004336026.1	SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: Muconate/chloromuconate cycloisomerase; KEGG: rha:RHA1_ro02372 muconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal
YP_004336027.1	TIGRFAM: Catechol 1,2-dioxygenase, actinobacteria; KEGG: rha:RHA1_ro02373 catechol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal
YP_004336028.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: rer:RER_54270 phenol hydroxylase
YP_004336029.1	KEGG: rha:RHA1_ro08076 phenol 2-monoxygenase, reductase component; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding
YP_004336030.1	TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: rer:RER_54240 transcriptional regulator CatR; SMART: Transcription regulator IclR, N-terminal
YP_004336031.1	KEGG: cai:Caci_3238 hypothetical protein
YP_004336032.1	KEGG: xtr:100497072 WAS/WASL-interacting protein family member 2-like
YP_004336033.1	KEGG: tfu:Tfu_0073 chromosome partitioning ATPase
YP_004336034.1	KEGG: mxa:MXAN_2883  lipoprotein
YP_004336035.1	PFAM: Glycoside hydrolase, family 16; KEGG: mva:Mvan_0209 glycoside hydrolase protein
YP_004336036.1	KEGG: lma:LmjF35.0540 proteophosphoglycan 5
YP_004336037.1	PFAM: Integrase, catalytic core, phage; KEGG: mjl:Mjls_5285 phage integrase protein
YP_004336038.1	PFAM: Integrase, catalytic core, phage; KEGG: mjl:Mjls_5286  DNA integrase/recombinase
YP_004336039.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: nml:Namu_4764 transposase IS111A/IS1328/IS1533
YP_004336044.1	PFAM: Integrase, catalytic core, phage; KEGG: sna:Snas_6234 regulatory protein GntR HTH
YP_004336045.1	PFAM: ABC-2 type transporter; KEGG: kfl:Kfla_5292 ABC-2 type transporter
YP_004336046.1	PFAM: Protein of unknown function DUF1212; KEGG: ami:Amir_0372 protein of unknown function DUF1212
YP_004336047.1	KEGG: sen:SACE_0462 trehalose-6-phosphate synthase; PFAM: Glycosyl transferase, family 20
YP_004336048.1	KEGG: ami:Amir_0370 trehalose-phosphatase; TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase
YP_004336049.1	KEGG: ami:Amir_0346 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI
YP_004336050.1	PFAM: ABC transporter metal-binding lipoprotein; KEGG: cmi:CMM_2941  metal ABC transporter, substrate-binding protein
YP_004336051.1	PFAM: ABC transporter-like; KEGG: sen:SACE_0452 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004336052.1	PFAM: ABC-3; KEGG: ami:Amir_0354 ABC-3 protein
YP_004336053.1	TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: nfa:nfa4390  tRNA/rRNA methyltransferase; SMART: RNA 2-O ribose methyltransferase, substrate binding
YP_004336054.1	SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: sen:SACE_0443 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR
YP_004336055.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nca:Noca_2629 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004336056.1	TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: req:REQ_06320 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core
YP_004336057.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rop:ROP_43780 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_004336058.1	PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family
YP_004336059.1	PFAM: DR1885-like metal-binding protein; KEGG: sen:SACE_0437 hypothetical protein
YP_004336060.1	KEGG: svi:Svir_35070 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core
YP_004336061.1	KEGG: gbr:Gbro_0965 hypothetical protein
YP_004336062.1	KEGG: sen:SACE_0432 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif
YP_004336063.1	KEGG: sen:SACE_0431 hypothetical protein
YP_004336064.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: svi:Svir_35370 predicted hydrolase or acyltransferase of alpha/beta superfamily
YP_004336065.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: fri:FraEuI1c_2656 antibiotic biosynthesis monooxygenase
YP_004336066.1	PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; KEGG: amd:AMED_8708 SIR2 family NAD-dependent deacetylase
YP_004336067.1	KEGG: kfl:Kfla_6806  phytochrome sensor protein
YP_004336068.1	KEGG: sen:SACE_0414  ATP-dependent Clp protease; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core
YP_004336069.1	PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: sro:Sros_5976 iron transport/utilisation related protein
YP_004336070.1	KEGG: ami:Amir_0330 hypothetical protein
YP_004336071.1	PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: gob:Gobs_0637 lysyl-tRNA synthetase
YP_004336072.1	PFAM: Type III pantothenate kinase; TIGRFAM: Type III pantothenate kinase; HAMAP: Type III pantothenate kinase; KEGG: sen:SACE_0408 accessory factor Bvg
YP_004336073.1	PFAM: Aspartate decarboxylase; TIGRFAM: Aspartate decarboxylase; HAMAP: Aspartate decarboxylase; KEGG: amd:AMED_8737 aspartate 1-decarboxylase
YP_004336074.1	TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: svi:Svir_35550 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_004336075.1	PFAM:  oxidoreductase/dehydrogenase, Rossmann-like domain; Domain of unknown function DUF2520; KEGG: amd:AMED_8739 oxidoreductase
YP_004336076.1	KEGG: ami:Amir_0323 hypothetical protein
YP_004336077.1	KEGG: sen:SACE_0402 hypothetical protein
YP_004336078.1	TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: sen:SACE_0400 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_004336079.1	SMART: Dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; KEGG: mjl:Mjls_5153 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase
YP_004336080.1	TIGRFAM: Dihydropteroate synthase; KEGG: svi:Svir_35630 dihydropteroate synthase; PFAM: Pterin-binding
YP_004336081.1	PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: mva:Mvan_5371 GTP cyclohydrolase I
YP_004336082.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: amd:AMED_8748 cell division protease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular
YP_004336083.1	KEGG: uma:UM02006.1 hypothetical protein
YP_004336084.1	TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: sen:SACE_0395 hypoxanthine-guanine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004336085.1	TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; HAMAP: Lysidine-tRNA(Ile) synthetase; KEGG: amd:AMED_8754 cell cycle protein MesJ; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase
YP_004336086.1	KEGG: svi:Svir_35720 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP003883, coenzyme F420 biosynthesis associated; Protein of unknown function DUF2342; PFAM: Protein of unknown function DUF2342
YP_004336087.1	KEGG: sen:SACE_0392 hypothetical protein; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C
YP_004336088.1	HAMAP: Inorganic pyrophosphatase; KEGG: sen:SACE_0391  inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase
YP_004336089.1	KEGG: kfl:Kfla_6903 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like
YP_004336090.1	PFAM: Endoribonuclease L-PSP; KEGG: tbi:Tbis_2099 endoribonuclease L-PSP
YP_004336091.1	PFAM: vWA containing CoxE-like; KEGG: tro:trd_1210 VWA domain containing CoxE-like protein
YP_004336092.1	KEGG: aeh:Mlg_1565 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core
YP_004336093.1	KEGG: ttr:Tter_2234 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004336094.1	PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: rca:Rcas_0841 molybdopterin dehydrogenase FAD-binding
YP_004336095.1	KEGG: cwo:Cwoe_4103 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004336097.1	PFAM: FAD dependent oxidoreductase; KEGG: rhi:NGR_b01290  monooxygenase
YP_004336098.1	PFAM: Amino acid permease domain; KEGG: dae:Dtox_3628 amino acid permease-associated region
YP_004336099.1	PFAM: Amidohydrolase 1; KEGG: ppu:PP_3194 hypothetical protein
YP_004336100.1	PFAM: Bacterial transcriptional activator domain; KEGG: ach:Achl_4571 transcriptional activator domain protein
YP_004336101.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: ttr:Tter_0115 alpha/beta hydrolase fold protein
YP_004336102.1	KEGG: amd:AMED_9127 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004336103.1	TIGRFAM: Thiolase; KEGG: gob:Gobs_3827 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004336104.1	KEGG: tcu:Tcur_1474 enoyl-CoA hydratase; PFAM: MaoC-like dehydratase
YP_004336105.1	PFAM: ATPase-like, ATP-binding domain; KEGG: fra:Francci3_0218  serine/threonine kinase anti-sigma factor
YP_004336106.1	KEGG: ade:Adeh_1215 hypothetical protein
YP_004336107.1	PFAM: Survival protein SurE-like phosphatase/nucleotidase; KEGG: msm:MSMEG_6820 acid phosphatase SurE
YP_004336109.1	KEGG: amd:AMED_4129 hypothetical protein
YP_004336110.1	KEGG: sen:SACE_7037 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004336111.1	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: amd:AMED_7921 acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused with biotin carboxyl carrier subunit; SMART: Biotin carboxylase, C-terminal
YP_004336112.1	KEGG: ami:Amir_6230 propionyl-CoA carboxylase; PFAM: Carboxyl transferase
YP_004336114.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msp:Mspyr1_19800 transcriptional regulator, TetR family
YP_004336115.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ami:Amir_4284 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase
YP_004336116.1	PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting; KEGG: aau:AAur_0386  iron-chelator utilization protein
YP_004336117.1	KEGG: fre:Franean1_5943 MbtH domain-containing protein; PFAM: MbtH-like protein; SMART: MbtH-like protein
YP_004336118.1	KEGG: stp:Strop_2011 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004336119.1	HAMAP: Phosphoenolpyruvate carboxylase, bacterial/plant-type; KEGG: fal:FRAAL0594 phosphoenolpyruvate carboxylase (PEPCase) (PepC); PFAM: Phosphoenolpyruvate carboxylase
YP_004336120.1	KEGG: ach:Achl_0177 LamB/YcsF family protein; HAMAP: Uncharacterised protein family UPF0271, LamB/YcsF; PFAM: Uncharacterised protein family UPF0271, LamB/YcsF
YP_004336121.1	TIGRFAM: Conserved hypothetical protein CHP00370; PFAM: Allophanate hydrolase subunit 1; KEGG: nda:Ndas_3557 allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1
YP_004336122.1	SMART: Allophanate hydrolase subunit 2; TIGRFAM: Allophanate hydrolase subunit 2; KEGG: sen:SACE_1552 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2
YP_004336123.1	TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: svi:Svir_34570 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC
YP_004336124.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kfl:Kfla_0703 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004336125.1	KEGG: ddr:Deide_2p01800  transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004336126.1	KEGG: tcu:Tcur_2183 adenylate/guanylate cyclase with integral membrane sensor; PFAM: HAMP linker domain; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: HAMP linker domain; Adenylyl cyclase class-3/4/guanylyl cyclase
YP_004336127.1	PFAM: MaoC-like dehydratase; KEGG: gob:Gobs_0308 MaoC domain-containing protein dehydratase
YP_004336128.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: gob:Gobs_0307 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004336129.1	TIGRFAM: Thiolase; KEGG: gob:Gobs_0306 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal
YP_004336130.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: gob:Gobs_0305 TetR family transcriptional regulator
YP_004336131.1	KEGG: cai:Caci_3363 acyl-CoA oxidase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase, C-terminal
YP_004336132.1	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: sen:SACE_4681  zinc-binding NADP-dependent dehydrogenase; SMART: Polyketide synthase, enoylreductase
YP_004336133.1	KEGG: xce:Xcel_3194 hypothetical protein
YP_004336134.1	PFAM: Transposase, IS111A/IS1328/IS1533, N-terminal; Transposase, IS116/IS110/IS902; KEGG: amd:AMED_6110 transposase
YP_004336136.1	PFAM: Domain of unknown function DUF1205; KEGG: sec:SC2704  glycosyl transferase, related to UDP-glucuronosyltransferase
YP_004336137.1	KEGG: ach:Achl_2244 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII
YP_004336138.1	PFAM: Integrase, catalytic core; KEGG: sen:SACE_5133 IS630 family transposase
YP_004336139.1	KEGG: sen:SACE_3554 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; Alpha/beta hydrolase fold-1; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004336140.1	KEGG: gob:Gobs_3432 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004336141.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: sen:SACE_0174 PadR-like family transcriptional regulator
YP_004336142.1	KEGG: fal:FRAAL0273  dioxygenase; PFAM: Carotenoid oxygenase
YP_004336143.1	KEGG: sen:SACE_0172 hypothetical protein
YP_004336144.1	KEGG: fri:FraEuI1c_3823 PASTA domain containing protein; PFAM: PASTA; SMART: PASTA
YP_004336145.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kfl:Kfla_2674 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004336146.1	PFAM: Protein of unknown function DUF161; KEGG: ami:Amir_6791 protein of unknown function DUF161
YP_004336147.1	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: sgr:SGR_6589  ABC transporter ATPase and permease component; SMART: ATPase, AAA+ type, core
YP_004336148.1	KEGG: sro:Sros_9035 hypothetical protein
YP_004336149.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sro:Sros_9036  transcriptional regulator, TetR family
YP_004336150.1	PFAM: Domain of unknown function DUF151; KEGG: svi:Svir_22570 hypothetical protein
YP_004336151.1	PFAM: Major facilitator superfamily MFS-1; KEGG: mmi:MMAR_2797 sialic acid-transport integral membrane protein NanT
YP_004336152.1	KEGG: smd:Smed_2207 hypothetical protein
YP_004336153.1	KEGG: tcu:Tcur_3194 heat shock protein DnaJ domain-containing protein
YP_004336154.1	PFAM: PspA/IM30; KEGG: fra:Francci3_2228 phage shock protein A, PspA
YP_004336155.1	KEGG: nml:Namu_4252 amino acid/peptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter
YP_004336156.1	KEGG: bbt:BBta_1128 monooxygenase of the alternative pyrimidine degradation pathway; TIGRFAM: Luciferase-like, pyrimidine utilisation protein RutA; PFAM: Luciferase-like, subgroup
YP_004336157.1	PFAM: Luciferase-like, subgroup; KEGG: hje:HacjB3_02270 luciferase-like monooxygenase
YP_004336158.1	PFAM: MmgE/PrpD; KEGG: bxe:Bxe_A4086 hypothetical protein
YP_004336159.1	PFAM: Amidase; KEGG: sro:Sros_0559 amidase
YP_004336161.1	KEGG: nca:Noca_4073 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004336162.1	KEGG: sro:Sros_6624 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III
YP_004336163.1	KEGG: fre:Franean1_1994 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004336164.1	PFAM: NLP/P60; KEGG: req:REQ_28170 peptidase
YP_004336165.1	PFAM: NLP/P60; KEGG: mkm:Mkms_3349 NLP/P60 protein
YP_004336166.1	KEGG: gob:Gobs_0789 oxidoreductase domain-containing protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal
YP_004336167.1	KEGG: nca:Noca_0273 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX
YP_004336168.1	KEGG: gob:Gobs_2269 beta-lactamase domain-containing protein; HAMAP: Ribonuclease Z; PFAM: Beta-lactamase-like
YP_004336169.1	KEGG: cwo:Cwoe_4105 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004336170.1	KEGG: rhi:NGR_c05970 carbon monoxide dehydrogenase medium chain; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004336171.1	KEGG: fre:Franean1_2500 enoyl-CoA hydratase; PFAM: Crotonase, core; Peptidase S49
YP_004336172.1	KEGG: sti:Sthe_2811 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004336173.1	KEGG: rhi:NGR_c06050 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004336174.1	KEGG: kfl:Kfla_1519 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004336175.1	KEGG: sen:SACE_2875 modular polyketide synthase; PFAM: AMP-dependent synthetase/ligase
YP_004336176.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_1887 TetR family transcriptional regulator
YP_004336177.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ami:Amir_2728 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004336179.1	PFAM: Uncharacterised conserved protein UCP007542; KEGG: rer:RER_23850 hypothetical protein
YP_004336180.1	PFAM: Protein of unknown function DUF1023; KEGG: sco:SCO3760 secreted protein
YP_004336181.1	KEGG: cai:Caci_8900 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004336182.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: ami:Amir_6236 histidine kinase
YP_004336183.1	KEGG: tcu:Tcur_1622 threonine ammonia-lyase; manually curated; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004336184.1	TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: mmi:MMAR_0209 glycine cleavage system H protein GcvH_1; PFAM: Glycine cleavage H-protein
YP_004336185.1	KEGG: cwo:Cwoe_2578 transcriptional regulator, XRE family; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004336186.1	PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; KEGG: scl:sce8999 hypothetical protein
YP_004336187.1	TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: vap:Vapar_2967 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal
YP_004336188.1	PFAM: Luciferase-like, subgroup; KEGG: sen:SACE_3003 FMN-dependent monooxygenase
YP_004336189.1	PFAM: Polyketide cyclase/dehydrase; KEGG: amd:AMED_7647 cyclase/dehydrase
YP_004336190.1	HAMAP: Phosphoglycerate kinase; KEGG: sen:SACE_2144 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004336191.1	SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: tbi:Tbis_1993 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_004336192.1	KEGG: tkm:TK90_0853 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004336193.1	PFAM: Fructose-bisphosphate aldolase, class-I; KEGG: afo:Afer_0177 fructose-bisphosphate aldolase
YP_004336194.1	KEGG: mta:Moth_1948 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_004336196.1	PFAM: Fructose-bisphosphate aldolase, class-I; KEGG: tkm:TK90_1149 fructose-bisphosphate aldolase
YP_004336197.1	PFAM: Phosphoribulokinase/uridine kinase; KEGG: tcu:Tcur_1650 phosphoribulokinase/uridine kinase
YP_004336198.1	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: bts:Btus_2647 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_004336199.1	KEGG: mjl:Mjls_1083 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004336200.1	KEGG: msm:MSMEG_1493 sensor histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; GAF; ATPase-like, ATP-binding domain; SMART: GAF; ATPase-like, ATP-binding domain
YP_004336201.1	PFAM: Integrase, catalytic core; KEGG: mpa:MAP3854 hypothetical protein
YP_004336202.1	KEGG: mes:Meso_3436 fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase, class-I
YP_004336203.1	HAMAP: Ribulose bisphosphate carboxylase, large subunit; KEGG: tcu:Tcur_1655 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal
YP_004336204.1	PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: tcu:Tcur_1656 ribulose-bisphosphate carboxylase; SMART: Ribulose bisphosphate carboxylase, small chain
YP_004336205.1	TIGRFAM: CbxX/CfqX, monofunctional; PFAM: ATPase, AAA-type, core; KEGG: tcu:Tcur_1657 CbbX protein; SMART: ATPase, AAA+ type, core
YP_004336206.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tcu:Tcur_1654 LysR family transcriptional regulator
YP_004336207.1	KEGG: sti:Sthe_1846 hypothetical protein
YP_004336208.1	KEGG: sti:Sthe_1229 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004336209.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04494 potassium uptake protein
YP_004336210.1	KEGG: shl:Shal_0400 hypothetical protein
YP_004336211.1	PFAM: Ribonuclease BN-related; KEGG: sen:SACE_6591 tRNA-processing ribonuclease BN
YP_004336212.1	KEGG: req:REQ_28540 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004336213.1	TIGRFAM: Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A; KEGG: kra:Krad_3462 monoxygenase
YP_004336214.1	PFAM: ABC transporter-like; KEGG: mrd:Mrad2831_3305 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004336215.1	PFAM: ABC transporter permease; KEGG: cpy:Cphy_1259 inner-membrane translocator
YP_004336216.1	PFAM: ABC transporter permease; KEGG: sco:SCO7183 branched amino acid transport system permease
YP_004336217.1	PFAM: Extracellular ligand-binding receptor; KEGG: dat:HRM2_46760 extracellular ligand-binding receptor
YP_004336218.1	KEGG: req:REQ_28550 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004336219.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: tcu:Tcur_1455 binding-protein-dependent transport systems inner membrane component
YP_004336220.1	KEGG: tcu:Tcur_1454 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
YP_004336221.1	PFAM: ABC transporter-like; KEGG: tcu:Tcur_1453 ABC transporter-like protein; SMART: ATPase, AAA+ type, core
YP_004336222.1	KEGG: tcu:Tcur_1452 acyl-CoA dehydrogenase
YP_004336223.1	KEGG: tcu:Tcur_1451 hypothetical protein
YP_004336224.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: nfa:nfa21280  transcriptional regulator
YP_004336225.1	KEGG: amd:AMED_3568 hypothetical protein
YP_004336226.1	KEGG: fre:Franean1_2312  integral membrane protein
YP_004336227.1	PFAM: AMP-dependent synthetase/ligase; KEGG: rop:ROP_03140 hypothetical protein
YP_004336228.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amd:AMED_6990 TetR family transcriptional regulator
YP_004336229.1	PFAM: Protein of unknown function DUF1116; KEGG: lhk:LHK_01303 DUF1116 domain containing protein
YP_004336230.1	KEGG: gob:Gobs_2618 hypothetical protein
YP_004336231.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: svi:Svir_19260 glyoxalase/bleomycin resistance protein/dioxygenase superfamily
YP_004336232.1	PFAM: Glycosyl transferase, group 1; KEGG: scl:sce8998  secreted protein
YP_004336233.1	KEGG: tro:trd_0573 protein FdrA
YP_004336234.1	KEGG: kcr:Kcr_1250 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_004336235.1	KEGG: tbi:Tbis_2669 winged helix family transcriptional regulator ATPase; PFAM: Signal transduction response regulator, C-terminal; Bacterial transcriptional activator domain; Tetratricopeptide TPR-1; SMART: Signal transduction response regulator, C-terminal; Tetratricopeptide repeat
YP_004336236.1	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rle:RL0658 hypothetical protein
YP_004336238.1	KEGG: bge:BC1002_5635 hypothetical protein
YP_004336240.1	KEGG: mmg:MTBMA_c17440 dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004336241.1	KEGG: nca:Noca_4839 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA
YP_004336242.1	KEGG: amd:AMED_5011 hypothetical protein
YP_004336243.1	PFAM: Dienelactone hydrolase; KEGG: ace:Acel_1423 carboxymethylenebutenolidase
YP_004336244.1	KEGG: dak:DaAHT2_2657 phosphonopyruvate decarboxylase-related protein; PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme
YP_004336245.1	TIGRFAM: Cytidyltransferase-related; KEGG: pca:Pcar_0825 nicotinamide mononucleotide adenylyltransferase, OrfX-like
YP_004336246.1	KEGG: ppw:PputW619_3157 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004336247.1	PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: sco:SCO0804 hypothetical protein
YP_004336248.1	PFAM: Domain of unknown function DUF88; KEGG: mil:ML5_5375 hypothetical protein
YP_004336249.1	PFAM: Helix-turn-helix, HxlR type; KEGG: cai:Caci_1043 transcriptional regulator, HxlR family
YP_004336250.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: amd:AMED_1314 short-chain dehydrogenase
YP_004336251.1	KEGG: ami:Amir_5315 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004336252.1	PFAM: Cupin 2, conserved barrel; KEGG: ace:Acel_0692 cupin 2 domain-containing protein
YP_004336253.1	PFAM: Dienelactone hydrolase; KEGG: mjl:Mjls_2098 dienelactone hydrolase
YP_004336254.1	KEGG: ami:Amir_3938 hypothetical protein
YP_004336255.1	KEGG: amd:AMED_4489 ATP-dependent DNA ligase
YP_004336256.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: nfa:nfa29480 hypothetical protein
YP_004336257.1	PFAM: Beta-lactamase-related; KEGG: mxa:MXAN_2150 beta-lactamase
YP_004336258.1	KEGG: sna:Snas_0649 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004336259.1	KEGG: hau:Haur_1072 activator of HSP90 ATPase 1 family protein; manually curated; PFAM: Activator of Hsp90 ATPase homologue 1-like
YP_004336260.1	KEGG: gob:Gobs_2516 hypothetical protein
YP_004336261.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: sro:Sros_0098 transcriptional regulator, PadR family
YP_004336262.1	KEGG: sna:Snas_4756 hypothetical protein
YP_004336264.1	PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ach:Achl_0672 2OG-Fe(II) oxygenase
YP_004336266.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: afw:Anae109_2054 OsmC family protein
YP_004336267.1	KEGG: nml:Namu_2396 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Alpha/beta hydrolase fold-1; SMART: Transcription regulator LuxR, C-terminal
YP_004336268.1	PFAM: Amidohydrolase 2; KEGG: mlo:mlr9221 hypothetical protein
YP_004336269.1	PFAM: Amidohydrolase 2; KEGG: mlo:mlr9222 hypothetical protein
YP_004336270.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bja:bll7609 Rieske (2Fe-2S) domain-containing protein
YP_004336271.1	manually curated; PFAM: HTH transcriptional regulator, AraC; KEGG: tpr:Tpau_2986 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004336272.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro02414 lyase
YP_004336273.1	PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: mav:MAV_5159 methionine sulfoxide reductase A
YP_004336274.1	KEGG: rha:RHA1_ro05161 hypothetical protein
YP_004336275.1	KEGG: nml:Namu_0818 hypothetical protein
YP_004336276.1	KEGG: nca:Noca_4962 transcriptional activator domain-containing protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal
YP_004336277.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: gdi:GDI_2727 hypothetical protein
YP_004336278.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: amd:AMED_4619 LysR family transcriptional regulator
YP_004336279.1	KEGG: mrd:Mrad2831_3061 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase
YP_004336280.1	KEGG: fri:FraEuI1c_2507 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Cyclic nucleotide-binding domain; SMART: ATPase-like, ATP-binding domain; Cyclic nucleotide-binding domain
YP_004336281.1	KEGG: gob:Gobs_2550 helicase domain-containing protein; PFAM: Helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal
YP_004336282.1	PFAM: Short-chain dehydrogenase/reductase SDR; Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; KEGG: mes:Meso_2493 short-chain dehydrogenase/reductase SDR; SMART: Transcription regulator LuxR, C-terminal
YP_004336283.1	KEGG: cai:Caci_4599 luciferase-like monooxygenase; TIGRFAM: F420-dependent oxidoreductase-predicted, Rv1855c; PFAM: Luciferase-like, subgroup
YP_004336284.1	PFAM: Crotonase, core; KEGG: cwo:Cwoe_2706 enoyl-CoA hydratase/isomerase
YP_004336285.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_0501 transcriptional regulator, TetR family
YP_004336286.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: msm:MSMEG_5845  C4-dicarboxylate transporter
YP_004336287.1	KEGG: nfa:nfa21950  hydantoinase; PFAM: Hydantoinase B/oxoprolinase
YP_004336288.1	KEGG: rha:RHA1_ro00479 hydantoin utilization protein A; PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal
YP_004336289.1	PFAM: Monooxygenase, FAD-binding; KEGG: nfa:nfa21970  oxidoreductase
YP_004336290.1	KEGG: nfa:nfa21960  acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004336291.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: rop:ROP_34370 maleate cis-trans isomerase
YP_004336292.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rop:ROP_34380 hypothetical protein
YP_004336293.1	KEGG: rop:ROP_34390 hypothetical protein
YP_004336294.1	KEGG: nfa:nfa21900 hypothetical protein
YP_004336295.1	PFAM: Integrase, catalytic core; KEGG: mpa:MAP3854 hypothetical protein
YP_004336296.1	PFAM: Homogentisate 1,2-dioxygenase; KEGG: sen:SACE_3944 homogentisate 1,2-dioxygenase
YP_004336297.1	KEGG: rer:RER_57680 hypothetical protein
YP_004336298.1	PFAM: Heat shock protein Hsp20; KEGG: amd:AMED_3057 heat shock protein
YP_004336299.1	KEGG: cfa:608199 hypothetical protein LOC608199
YP_004336300.1	KEGG: gob:Gobs_2541 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain
YP_004336301.1	KEGG: gob:Gobs_2540  signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain
YP_004336302.1	PFAM: Transposase, IS4-like; KEGG: gob:Gobs_1406 hypothetical protein
YP_004336303.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: mil:ML5_1921 plasmid pria4b orf-3 family protein
YP_004336304.1	KEGG: gob:Gobs_3530 transposase
YP_004336305.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: amd:AMED_1482  transposase
YP_004336306.1	KEGG: tbi:Tbis_3219 hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like
YP_004336307.1	PFAM: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: tbi:Tbis_3220 hydrogenase expression/synthesis HypA
YP_004336308.1	KEGG: tbi:Tbis_3221 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004336309.1	PFAM: Protein of unknown function DUF1641; KEGG: tbi:Tbis_3222 hypothetical protein
YP_004336310.1	KEGG: tbi:Tbis_3223 hydrogenase (NiFe) small subunit HydA; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit
YP_004336311.1	KEGG: tbi:Tbis_3224 cytochrome-c3 hydrogenase; PFAM: Nickel-dependent hydrogenase, large subunit
YP_004336312.1	KEGG: mva:Mvan_2367 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein
YP_004336313.1	KEGG: msm:MSMEG_2266 hypothetical protein
YP_004336314.1	KEGG: msm:MSMEG_2267 TPR repeat-containing protein
YP_004336315.1	KEGG: chl:Chy400_2991 hypothetical protein
YP_004336316.1	PFAM: NIF system FeS cluster assembly, NifU, C-terminal; Rieske [2Fe-2S] iron-sulphur domain; KEGG: msm:MSMEG_2268 hypothetical protein
YP_004336317.1	PFAM: NHL repeat; KEGG: mva:Mvan_2370 NHL repeat-containing protein
YP_004336318.1	KEGG: tbi:Tbis_3230 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Carbamoyltransferase, HypF-type; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type
YP_004336319.1	KEGG: tbi:Tbis_3231 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC
YP_004336320.1	PFAM: Hydrogenase expression/formation protein, HupF/HypC; KEGG: tbi:Tbis_3232 hypothetical protein
YP_004336321.1	KEGG: mmi:MMAR_1860  sugar phosphate isomerase
YP_004336322.1	KEGG: mmi:MMAR_1859 hydrogenase maturation factor, HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein
YP_004336323.1	KEGG: mmi:MMAR_1858 hydrogenase maturation factor, HypC; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC
YP_004336324.1	KEGG: tbi:Tbis_3236 hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein
YP_004336325.1	KEGG: tbi:Tbis_3237 hypothetical protein
YP_004336326.1	KEGG: msm:MSMEG_2270 hypothetical protein
YP_004336328.1	KEGG: rha:RHA1_ro11310 hydroxyquinol 1,2-dioxygenase; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal; Catechol dioxygenase, N-terminal
YP_004336329.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro11311 hypothetical protein
YP_004336330.1	PFAM: Transposase, IS4-like; KEGG: gob:Gobs_1406 hypothetical protein
YP_004336331.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: mil:ML5_1921 plasmid pria4b orf-3 family protein
YP_004336332.1	PFAM: Transposase, IS4-like; KEGG: sen:SACE_4676 IS402-like transposase
YP_004336333.1	KEGG: gob:Gobs_2540  signal transduction histidine kinase
YP_004336334.1	PFAM: Peptidase M23; KEGG: xau:Xaut_4198 peptidase M23B
YP_004336338.1	KEGG: fri:FraEuI1c_4593 transcriptional regulator, SARP family
YP_004336341.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: nml:Namu_0557 alpha/beta hydrolase fold protein
YP_004336343.1	KEGG: nml:Namu_5075 hypothetical protein
YP_004336344.1	PFAM: Amidase; KEGG: rhi:NGR_b05700 indoleacetamide hydrolase
YP_004336345.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_2153 transcriptional regulator, TetR family protein
YP_004336346.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: art:Arth_0865 TetR family transcriptional regulator
YP_004336347.1	KEGG: cai:Caci_7157 hypothetical protein
YP_004336348.1	PFAM: ABC transporter-like; KEGG: kfl:Kfla_0628 ABC transporter related protein; SMART: ATPase, AAA+ type, core
YP_004336349.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: gob:Gobs_3888 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004336350.1	PFAM: FAD dependent oxidoreductase; KEGG: gob:Gobs_3895 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004336351.1	PFAM: Heavy metal transport/detoxification protein; KEGG: mil:ML5_0770 heavy metal transport/detoxification protein
YP_004336352.1	KEGG: gob:Gobs_3893 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004336353.1	KEGG: fri:FraEuI1c_1573 hypothetical protein
YP_004336354.1	KEGG: req:REQ_03350 sam dependent methyltransferase
YP_004336355.1	KEGG: mva:Mvan_1930 hypothetical protein
YP_004336356.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sro:Sros_4758 hypothetical protein
YP_004336357.1	PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: cwo:Cwoe_1418 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin
YP_004336358.1	KEGG: sgr:SGR_274  two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal
YP_004336359.1	KEGG: cwo:Cwoe_1411 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
YP_004336360.1	PFAM: Uncharacterised protein family YphA; KEGG: rha:RHA1_ro10353 hypothetical protein
YP_004336361.1	PFAM: Chloride channel, voltage gated; KEGG: amr:AM1_2979 Cl-channel, voltage gated
YP_004336362.1	PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: sro:Sros_7914 cytochrome d ubiquinol oxidase, subunit I
YP_004336363.1	PFAM: Cytochrome d ubiquinol oxidase, subunit II; KEGG: sro:Sros_7913 terminal oxidase subunit II
YP_004336364.1	PFAM: Glycoside hydrolase 15-related; KEGG: cwo:Cwoe_0874 glycoside hydrolase 15-related protein
YP_004336365.1	KEGG: nml:Namu_1841 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004336366.1	TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: npu:Npun_F3304 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding
YP_004336367.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_3368 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004336368.1	PFAM: Methyltransferase type 12; KEGG: rxy:Rxyl_0824 type 12 methyltransferase
YP_004336369.1	KEGG: fre:Franean1_0560 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004336371.1	PFAM: Copper amine oxidase, C-terminal; Copper amine oxidase, N3-terminal; Copper amine oxidase, N2-terminal; KEGG: fre:Franean1_7247 tyramine oxidase
YP_004336372.1	PFAM: Amino acid permease domain; KEGG: msm:MSMEG_1137 amino acid permease-associated region
YP_004336373.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ank:AnaeK_1572 regulatory protein TetR
YP_004336374.1	KEGG: lch:Lcho_4113 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain
YP_004336375.1	KEGG: cyn:Cyan7425_0749 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004336376.1	KEGG: hau:Haur_1254 cobyrinic acid ac-diamide synthase
YP_004336377.1	PFAM: Patatin/Phospholipase A2-related; Cyclic nucleotide-binding domain; KEGG: dal:Dalk_2094 cyclic nucleotide-binding protein; SMART: Cyclic nucleotide-binding domain
YP_004336378.1	KEGG: kva:Kvar_3050 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain
YP_004336379.1	KEGG: amd:AMED_2409 FAD linked oxidase-like protein; PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like
YP_004336380.1	PFAM: Bacterial transcriptional activator domain; KEGG: pol:Bpro_1406 transcriptional activator domain-containing protein
YP_004336381.1	KEGG: nml:Namu_0956 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004336382.1	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: nml:Namu_0955 hemerythrin HHE cation binding domain-containing protein
YP_004336383.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: msm:MSMEG_1587 alpha/beta hydrolase fold
YP_004336384.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: nar:Saro_2409 methionine synthase, vitamin-B12 independent
YP_004336385.1	PFAM: Beta-lactamase-related; KEGG: dsh:Dshi_2284 hypothetical protein
YP_004336386.1	KEGG: nml:Namu_1675 aminoglycoside phosphotransferase
YP_004336387.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rop:ROP_17540 MFS transporter
YP_004336389.1	PFAM: Cytochrome P450; KEGG: swi:Swit_1021 cytochrome P450
YP_004336390.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: fri:FraEuI1c_5691 hypothetical protein
YP_004336391.1	KEGG: nfa:nfa12460  transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004336392.1	KEGG: nfa:nfa21960  acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004336393.1	PFAM: Monooxygenase, FAD-binding; KEGG: reu:Reut_B5482 monooxygenase, FAD-binding
YP_004336394.1	PFAM: Flavodoxin/nitric oxide synthase; KEGG: mag:amb4017 multimeric flavodoxin WrbA
YP_004336395.1	KEGG: nfa:nfa21900 hypothetical protein
YP_004336396.1	KEGG: nfa:nfa21910 hypothetical protein
YP_004336397.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa21920 hypothetical protein
YP_004336398.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rop:ROP_34320  TetR family transcriptional regulator
YP_004336399.1	KEGG: cse:Cseg_1400 hypothetical protein
YP_004336401.1	KEGG: bpt:Bpet1649 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004336402.1	KEGG: sco:SCO1204 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004336403.1	PFAM: Major facilitator superfamily MFS-1; KEGG: dsy:DSY3923 hypothetical protein
YP_004336404.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_PC0000387 gamma-carboxymuconolactone decarboxylase
YP_004336405.1	KEGG: mrd:Mrad2831_3250 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_004336406.1	PFAM: Crotonase, core; KEGG: pzu:PHZ_p0199 enoyl-CoA hydratase/isomerase protein
YP_004336407.1	KEGG: rer:RER_08290 hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004336408.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dge:Dgeo_1081 6-phosphogluconate dehydrogenase, NAD-binding
YP_004336409.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: rso:RSc0298 B-ketoadipate enol-lactone hydrolase
YP_004336410.1	KEGG: cwo:Cwoe_4118  transcriptional regulator, PucR family
YP_004336411.1	KEGG: cwo:Cwoe_4112 5,10-methylenetetrahydromethanopterin reductase; PFAM: Luciferase-like, subgroup
YP_004336412.1	PFAM: Protein of unknown function DUF917; KEGG: cwo:Cwoe_4117 protein of unknown function DUF917
YP_004336413.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: tbi:Tbis_2949 hydantoinase/oxoprolinase
YP_004336414.1	PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal; KEGG: dka:DKAM_0739 molybdopterin dehydrogenase FAD-binding
YP_004336415.1	KEGG: cai:Caci_4735 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004336416.1	KEGG: cwo:Cwoe_4113 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004336417.1	KEGG: cwo:Cwoe_4103 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
YP_004336418.1	KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal
YP_004336419.1	KEGG: tro:trd_A0776 carbon monoxide dehydrogenase small chain (CO dehydrogenase subunit S) (CO-DH S); PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004336421.1	KEGG: ava:Ava_1387 BNR repeat-containing glycosyl hydrolase; PFAM: Peptidase M10, metallopeptidase; SMART: Peptidase, metallopeptidase
YP_004336422.1	PFAM: Luciferase-like, subgroup; KEGG: svi:Svir_26120 flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase
YP_004336423.1	PFAM: Domain of unknown function DUF336; KEGG: mau:Micau_3758 hypothetical protein
YP_004336424.1	KEGG: nar:Saro_1475 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004336425.1	KEGG: svi:Svir_26160 DNA-binding domain-containing protein, AraC-type; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain
YP_004336426.1	KEGG: sen:SACE_1570 hypothetical protein
YP_004336427.1	KEGG: sma:SAV_7223 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02678; PFAM: Conserved hypothetical protein CHP02678
YP_004336428.1	KEGG: sma:SAV_7222 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02677; PFAM: Conserved hypothetical protein CHP02677
YP_004336429.1	TIGRFAM: Conserved hypothetical protein CHP02680; KEGG: sma:SAV_7224 hypothetical protein
YP_004336430.1	PFAM: ATPase, AAA-4; KEGG: xce:Xcel_3059  transcriptional regulator
YP_004336431.1	PFAM: Protein of unknown function DUF1486; KEGG: gvi:glr2060 hypothetical protein
YP_004336432.1	KEGG: sen:SACE_0379 DNA polymerase III, delta' subunit; TIGRFAM: DNA polymerase III, delta prime subunit; SMART: ATPase, AAA+ type, core
YP_004336433.1	KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20
YP_004336434.1	PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PASTA; KEGG: sen:SACE_0314 penicillin binding protein (class A); SMART: PASTA
YP_004336435.1	PFAM: Transcription factor WhiB; KEGG: ami:Amir_0236 transcription factor WhiB
YP_004336436.1	SMART: Transcription regulator AbrB/SpoV, predicted; manually curated; TIGRFAM: Transcription regulator AbrB; KEGG: mno:Mnod_8631 SpoVT/AbrB domain protein; PFAM: Transcription regulator AbrB/SpoV, predicted
YP_004336437.1	PFAM: PilT protein, N-terminal; KEGG: tkm:TK90_1566 PilT protein domain protein
YP_004336438.1	KEGG: rop:ROP_28280 hypothetical protein
YP_004336439.1	KEGG: svi:Svir_36230 oxyanion-translocating ATPase
YP_004336440.1	KEGG: svi:Svir_36220 oxyanion-translocating ATPase
YP_004336441.1	KEGG: mcu:HMPREF0573_10749 hypothetical protein
YP_004336442.1	PFAM: Endoribonuclease L-PSP; KEGG: mav:MAV_0451 translation initiation inhibitor
YP_004336443.1	KEGG: ami:Amir_0242 hypothetical protein
YP_004336444.1	KEGG: ssc:100113399 basic proline-rich protein
YP_004336445.1	PFAM: Oxidoreductase, N-terminal; KEGG: amd:AMED_9030 hypothetical protein
YP_004336446.1	PFAM: NUDIX hydrolase domain; KEGG: req:REQ_31840 NUDIX superfamily hydrolase
YP_004336447.1	KEGG: ami:Amir_0248 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like
YP_004336448.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_8834 major facilitator transporter
YP_004336449.1	KEGG: ami:Amir_0253 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp
YP_004336450.1	KEGG: ami:Amir_0254 hypothetical protein
YP_004336451.1	SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; TIGRFAM: Endonuclease III/Nth; KEGG: mjl:Mjls_5203 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif
YP_004336452.1	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: sen:SACE_0332 redoxin
YP_004336453.1	PFAM: NUDIX hydrolase domain; KEGG: ami:Amir_0257 NUDIX hydrolase
YP_004336454.1	PFAM: Colicin V production, CvpA; Peptidase S1/S6, chymotrypsin/Hap; KEGG: sen:SACE_0334  membrane-associated serine protease
YP_004336455.1	KEGG: svi:Svir_38190 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase
YP_004336456.1	KEGG: svi:Svir_38200 hypothetical protein
YP_004336457.1	PFAM: Urease, alpha/gamma subunit; TIGRFAM: Urease, alpha/gamma subunit; HAMAP: Urease, gamma subunit; KEGG: amd:AMED_8450 urease gamma subunit
YP_004336458.1	PFAM: Urease, beta subunit; TIGRFAM: Urease, beta subunit; HAMAP: Urease, beta subunit; KEGG: ami:Amir_0507 urease, beta subunit
YP_004336459.1	PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; TIGRFAM: Urease, alpha subunit; HAMAP: Urease, alpha subunit; KEGG: amd:AMED_8448 urease alpha subunit
YP_004336460.1	KEGG: sen:SACE_0637  urease accessory protein
YP_004336461.1	TIGRFAM: Urease accessory protein UreG; HAMAP: Urease accessory protein UreG; KEGG: amd:AMED_8446 urease accessory protein UreG; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like
YP_004336462.1	KEGG: sen:SACE_0639  urease accessory protein; HAMAP: Urease accessory protein UreD; PFAM: Urease accessory protein UreD
YP_004336463.1	KEGG: svi:Svir_06320 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004336464.1	KEGG: mjl:Mjls_0494 hypothetical protein
YP_004336465.1	TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; KEGG: sen:SACE_7180 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II
YP_004336466.1	KEGG: svi:Svir_38280 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family; TIGRFAM: RNA polymerase sigma-E type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2
YP_004336468.1	PFAM: SNARE associated Golgi protein; KEGG: ami:Amir_6926 SNARE associated Golgi protein
YP_004336469.1	PFAM: SNARE associated Golgi protein; KEGG: ami:Amir_6928 SNARE associated Golgi protein
YP_004336470.1	PFAM: Glycoside hydrolase, family 76; KEGG: ami:Amir_6932 glycoside hydrolase 76
YP_004336471.1	KEGG: amd:AMED_4850 hypothetical protein; PFAM: Amidohydrolase 1
YP_004336472.1	KEGG: amd:AMED_4851 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal
YP_004336473.1	KEGG: amd:AMED_4852 predicted acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase III
YP_004336474.1	KEGG: nml:Namu_0045 citrate synthase
YP_004336475.1	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: nml:Namu_0046 extradiol ring-cleavage dioxygenase class III protein subunit B
YP_004336476.1	KEGG: nml:Namu_0047 hypothetical protein
YP_004336477.1	KEGG: nml:Namu_0050 alcohol dehydrogenase zinc-binding domain-containing protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase
YP_004336478.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: fre:Franean1_1892 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_004336479.1	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: svi:Svir_38470 rRNA methylase
YP_004336480.1	KEGG: sro:Sros_6483 ATP-dependent Zn protease-like protein; PFAM: ATPase, AAA-type, core; Peptidase M41; SMART: ATPase, AAA+ type, core
YP_004336481.1	KEGG: sro:Sros_6484 hypothetical protein
YP_004336482.1	TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: svi:Svir_38490 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004336483.1	KEGG: ami:Amir_6941 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR
YP_004336484.1	KEGG: sen:SACE_7191 hypothetical protein
YP_004336485.1	KEGG: amd:AMED_6632 hypothetical protein
YP_004336487.1	KEGG: ami:Amir_3481 hypothetical protein
YP_004336488.1	TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: ami:Amir_6943 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core
YP_004336489.1	PFAM: ATPase, AAA-type, core; KEGG: mmi:MMAR_1535 ATPase; SMART: ATPase, AAA+ type, core
YP_004336490.1	PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; KEGG: mmi:MMAR_1536 hypothetical protein
YP_004336491.1	KEGG: sen:SACE_7205 hypothetical protein; manually curated; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain
YP_004336492.1	KEGG: ami:Amir_6945 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase FAD/NAD(P)-binding; Globin, subset; Oxidoreductase, FAD-binding domain
YP_004336493.1	KEGG: sen:SACE_7207 heat shock regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004336494.1	SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: ami:Amir_6947 chaperone protein DnaJ; HAMAP: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, N-terminal
YP_004336495.1	KEGG: amd:AMED_9165 molecular chaperone GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor
YP_004336496.1	TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: ami:Amir_6949 molecular chaperone DnaK; PFAM: Heat shock protein 70
YP_004336497.1	KEGG: sen:SACE_2096 PE-PGRS family protein
YP_004336498.1	KEGG: svi:Svir_38140 hypothetical protein
YP_004336499.1	KEGG: sen:SACE_1599 hypothetical protein
YP_004336500.1	PFAM: NLP/P60; KEGG: amd:AMED_1189 lipoprotein
YP_004336501.1	KEGG: amd:AMED_1188 hypothetical protein
YP_004336502.1	KEGG: sen:SACE_1596 hypothetical protein
YP_004336503.1	KEGG: ami:Amir_0886 hypothetical protein
YP_004336504.1	KEGG: sen:SACE_1594 hypothetical protein
YP_004336505.1	KEGG: amd:AMED_1184 hypothetical protein
YP_004336506.1	PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: amd:AMED_4355  Fe-S oxidoreductase
YP_004336507.1	KEGG: spu:591086 similar to Nucb2b protein
YP_004336508.1	KEGG: sro:Sros_4334 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004336509.1	PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: gob:Gobs_4837 integral membrane sensor signal transduction histidine kinase
YP_004336510.1	PFAM: ABC transporter-like; KEGG: sen:SACE_0789 ABC-type transporter, ATPase component; SMART: ATPase, AAA+ type, core
YP_004336511.1	PFAM: ABC-2 type transporter; KEGG: cwo:Cwoe_5631 ABC-2 type transporter
YP_004336512.1	TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase; KEGG: ami:Amir_6959 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain
YP_004336513.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mjl:Mjls_1351 UDP-N-acetylglucosamine 2-epimerase
YP_004336514.1	PFAM: Monooxygenase, FAD-binding; KEGG: amd:AMED_2379 FAD-dependent oxidoreductase
YP_004336515.1	PFAM: Tetracycline transcriptional regulator, TetR, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sco:SCO7624 TetR family transcriptional regulator
YP_004336516.1	KEGG: sco:SCO3065 hypothetical protein
YP_004336517.1	KEGG: cfl:Cfla_3584 ATP-binding membrane protein
YP_004336518.1	KEGG: kfl:Kfla_3254 hypothetical protein
YP_004336519.1	KEGG: scl:sce4225 hypothetical protein
YP_004336520.1	PFAM: NLP/P60; KEGG: svi:Svir_07310 cell wall-associated hydrolase, invasion-associated protein
YP_004336521.1	KEGG: sen:SACE_1597 hypothetical protein
YP_004336522.1	KEGG: sen:SACE_1596 hypothetical protein
YP_004336523.1	KEGG: svi:Svir_07280 hypothetical protein
YP_004336524.1	KEGG: svi:Svir_07270 hypothetical protein
YP_004336525.1	KEGG: amd:AMED_1801 hypothetical protein
YP_004336526.1	KEGG: kfl:Kfla_2555 hypothetical protein
YP_004336527.1	KEGG: mva:Mvan_5243 hypothetical protein
YP_004336528.1	PFAM: Transglycosylase-like; KEGG: svi:Svir_32470 hypothetical protein
YP_004336529.1	KEGG: tfu:Tfu_0073 chromosome partitioning ATPase
YP_004336530.1	KEGG: ske:Sked_11770 hypothetical protein
YP_004336532.1	PFAM: Heat shock protein 70; KEGG: aau:AAur_3285  DnaK family protein
YP_004336533.1	KEGG: ach:Achl_3085 hypothetical protein
YP_004336534.1	KEGG: ach:Achl_3085 hypothetical protein
YP_004336535.1	KEGG: aau:AAur_3282 hypothetical protein
YP_004336536.1	PFAM: GTP-binding protein, HSR1-related; KEGG: ach:Achl_3083  GTPase of unknown function
YP_004336537.1	KEGG: amd:AMED_2993 isoquinoline 1-oxidoreductase alpha subunit; PFAM: [2Fe-2S]-binding; Ferredoxin
YP_004336538.1	KEGG: amd:AMED_2992 isoquinoline 1-oxidoreductase beta subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
YP_004336539.1	KEGG: ami:Amir_0559 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004336540.1	KEGG: ddr:Deide_2p01860  bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; muramoylpentapeptide carboxypeptidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Twin-arginine translocation pathway, signal sequence, bacterial/archaeal; Peptidoglycan binding-like; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; Peptidoglycan recognition protein, metazoa/bacteria
YP_004336541.1	PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: ami:Amir_6963 acyl-CoA dehydrogenase domain protein
YP_004336542.1	KEGG: rop:ROP_02680 hypothetical protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004336543.1	PFAM: Vancomycin resistance VanW; KEGG: mva:Mvan_1124 VanW family protein
YP_004336544.1	manually curated; PFAM: Chaperonin Cpn10; KEGG: sen:SACE_7319 GroES family molecular chaperone; SMART: Chaperonin Cpn10
YP_004336545.1	KEGG: sen:SACE_7308 hypothetical protein
YP_004336546.1	PFAM: Protein of unknown function DUF541; KEGG: ami:Amir_6970 protein of unknown function DUF541
YP_004336547.1	KEGG: ami:Amir_2415 hypothetical protein
YP_004336548.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: nml:Namu_2963 FxsA cytoplasmic membrane protein
YP_004336549.1	KEGG: sen:SACE_7296  dihydrolipoamide acyltransferase component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding
YP_004336550.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: sen:SACE_7295 pyruvate dehydrogenase E1 component beta subunit; SMART: Transketolase-like, pyrimidine-binding domain
YP_004336551.1	TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit subgroup x; KEGG: sen:SACE_7294 pyruvate dehydrogenase E1 component, alpha subunit; PFAM: Dehydrogenase, E1 component
YP_004336552.1	KEGG: amd:AMED_3003 hypothetical protein
YP_004336553.1	KEGG: amd:AMED_9209 ABC transport system substrate-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004336554.1	KEGG: amd:AMED_9208 permease component of ABC-type amino acid transport system; TIGRFAM: Amino acid ABC transporter, permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004336555.1	PFAM: ABC transporter-like; KEGG: sgr:SGR_2239  ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004336556.1	KEGG: amd:AMED_9241 carboxymuconolactone decarboxylase; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004336557.1	KEGG: tbi:Tbis_1574 superfamily I DNA/RNA helicase
YP_004336558.1	PFAM: Sodium/solute symporter; KEGG: amd:AMED_9243 solute:Na+ symporter, SSS family
YP_004336559.1	KEGG: ami:Amir_6998 hypothetical protein
YP_004336560.1	HAMAP: Phosphoenolpyruvate carboxykinase, GTP-utilising; KEGG: ami:Amir_6994 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, GTP-utilising
YP_004336561.1	KEGG: sro:Sros_4058  esterase
YP_004336562.1	KEGG: sro:Sros_4059 helix-turn-helix, type 11
YP_004336563.1	KEGG: bcv:Bcav_1650 chromosome replication initiation inhibitor protein; TIGRFAM: Transcription regulator ArgP; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding
YP_004336564.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: xce:Xcel_2243 lysine exporter protein (LysE/YggA)
YP_004336565.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bcv:Bcav_3406 major facilitator superfamily MFS_1
YP_004336566.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bcv:Bcav_3407 transcriptional regulator, TetR family
YP_004336567.1	KEGG: ami:Amir_4799 monooxygenase FAD-binding; PFAM: Monooxygenase, FAD-binding
YP_004336568.1	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: fre:Franean1_7123 TetR family transcriptional regulator
YP_004336569.1	KEGG: sen:SACE_4158 hypothetical protein
YP_004336571.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: rer:RER_31370 hypothetical protein
YP_004336572.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: req:REQ_23720 peptidase
YP_004336574.1	KEGG: mjl:Mjls_0164 hypothetical protein
YP_004336575.1	PFAM: Protein of unknown function DUF2339, transmembrane; KEGG: ami:Amir_7071 hypothetical protein
YP_004336576.1	TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; KEGG: sen:SACE_7256 tRNA (guanine-N7-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase
YP_004336577.1	KEGG: amd:AMED_4154 nitric-oxide synthase; PFAM: Nitric oxide synthase, oxygenase domain
YP_004336578.1	KEGG: ace:Acel_1660 phenylacetic acid degradation protein PaaD; TIGRFAM: Phenylacetic acid degradation protein PaaD; Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily
YP_004336579.1	KEGG: ach:Achl_2866 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain
YP_004336580.1	KEGG: gob:Gobs_1115 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004336581.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: saq:Sare_1431 extracellular solute-binding protein
YP_004336582.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mva:Mvan_3092 binding-protein-dependent transport systems inner membrane component
YP_004336583.1	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: saq:Sare_1429 ABC transporter related; SMART: ATPase, AAA+ type, core
YP_004336584.1	KEGG: mpa:MAP3642c hypothetical protein
YP_004336585.1	KEGG: sen:SACE_7247 N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase 1
YP_004336587.1	PFAM: Uncharacterised protein family UPF0118; KEGG: amd:AMED_9310 hypothetical protein
YP_004336588.1	PFAM: Coenzyme A transferase; KEGG: nfa:nfa35190  CoA transferase A subunit; SMART: Coenzyme A transferase
YP_004336589.1	PFAM: Coenzyme A transferase; KEGG: nda:Ndas_2284 coenzyme A transferase; SMART: Coenzyme A transferase
YP_004336590.1	TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: rxy:Rxyl_1578 3-oxoadipate enol-lactonase; PFAM: Alpha/beta hydrolase fold-1
YP_004336592.1	TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: svi:Svir_39470 primary replicative DNA helicase; SMART: ATPase, AAA+ type, core
YP_004336593.1	TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: saq:Sare_5065 50S ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal
YP_004336594.1	TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: sgr:SGR_3672 30S ribosomal protein S18; PFAM: Ribosomal protein S18
YP_004336595.1	KEGG: amd:AMED_9297 single-strand DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding
YP_004336596.1	TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, plastid/chloroplast; KEGG: req:REQ_46500 30S ribosomal protein S6 RpsF; PFAM: Ribosomal protein S6
YP_004336597.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: ami:Amir_7037 endonuclease IV; SMART: Endodeoxyribonuclease IV
YP_004336598.1	KEGG: ami:Amir_7036  integral membrane protein
YP_004336599.1	PFAM: NUDIX hydrolase domain; KEGG: sen:SACE_3330 NUDIX hydrolase
YP_004336600.1	KEGG: nml:Namu_5370 hypothetical protein
YP_004336601.1	manually curated; KEGG: svi:Svir_39350 predicted integral membrane protein
YP_004336602.1	KEGG: nfa:nfa55570  penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase
YP_004336603.1	KEGG: ami:Amir_7033 hypothetical protein
YP_004336604.1	PFAM: Transcription regulator PadR N-terminal-like; KEGG: ami:Amir_7032 transcriptional regulator, PadR-like family
YP_004336605.1	KEGG: amd:AMED_9284 myo-inositol-1-phosphate synthase; TIGRFAM: Myo-inositol 1-phosphate synthase, actinobacteria; PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase, GAPDH-like
YP_004336606.1	PFAM: NLP/P60; KEGG: rop:ROP_08530 NlpC/P60 family protein
YP_004336607.1	PFAM: Uncharacterised protein family UPF0158; KEGG: amd:AMED_5605 hypothetical protein
YP_004336608.1	PFAM: HEPN; KEGG: tga:TGAM_0259 hypothetical protein
YP_004336609.1	TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: sen:SACE_7373 leucyl-tRNA synthetase
YP_004336610.1	KEGG: sen:SACE_7375 hypothetical protein
YP_004336611.1	KEGG: ami:Amir_7076 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179
YP_004336612.1	PFAM: Major facilitator superfamily MFS-1; KEGG: ami:Amir_7077 major facilitator superfamily MFS_1
YP_004336613.1	KEGG: svi:Svir_39600 tRNA adenylyltransferase; TIGRFAM: tRNA adenylyltransferase; Uncharacterised protein family HDIG; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain
YP_004336614.1	PFAM: NUDIX hydrolase domain; KEGG: ami:Amir_7080 NUDIX hydrolase
YP_004336615.1	KEGG: ami:Amir_7081 hypothetical protein
YP_004336616.1	KEGG: ami:Amir_7083 hypothetical protein
YP_004336617.1	KEGG: ami:Amir_7084 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004336618.1	KEGG: tcr:506959.90 hypothetical protein
YP_004336619.1	TIGRFAM: Thioredoxin reductase; KEGG: sen:SACE_7384 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004336620.1	KEGG: rer:RER_60210 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004336621.1	KEGG: sen:SACE_7386 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; Peptidoglycan binding-like; SMART: Cell wall hydrolase/autolysin, catalytic
YP_004336622.1	KEGG: amd:AMED_9356 hypothetical protein
YP_004336623.1	KEGG: amd:AMED_9357 aminotransferase AvtA; PFAM: Aminotransferase, class I/classII
YP_004336624.1	HAMAP: D-alanine--D-alanine ligase; KEGG: ami:Amir_7091 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal
YP_004336625.1	KEGG: oaa:100075123 similar to splicing coactivator subunit SRm300
YP_004336626.1	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ami:Amir_7092 ParB-like partition protein; SMART: ParB-like nuclease
YP_004336627.1	KEGG: ami:Amir_7093 cobyrinic acid ac-diamide synthase; manually curated; PFAM: Cobyrinic acid a,c-diamide synthase
YP_004336628.1	TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: svi:Svir_39750 glucose-inhibited division protein B; PFAM: rRNA small subunit methyltransferase G
YP_004336629.1	KEGG: sen:SACE_7393 single-stranded nucleic acid binding R3H; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H
YP_004336630.1	KEGG: ami:Amir_7097 60 kDa inner membrane insertion protein; TIGRFAM: Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC
YP_004336631.1	TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: ami:Amir_7098 protein of unknown function DUF37; PFAM: Protein of unknown function DUF37
YP_004336632.1	TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: svi:Svir_39790 ribonuclease P protein component; PFAM: Ribonuclease P
YP_004336633.1	TIGRFAM: Ribosomal protein L34; HAMAP: Ribosomal protein L34; KEGG: cpu:cpfrc_02110 50S ribosomal protein L34; PFAM: Ribosomal protein L34
YP_004336634.1	TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: afl:Aflv_0784 phage associated DNA primase; SMART: Phage/plasmid primase, P4, C-terminal
YP_004336640.1	KEGG: cms:CMS_pCSL0098 putative partitioning protein ParA
YP_004336642.1	KEGG: sma:SAV_2075 hypothetical protein
YP_004336644.1	PFAM: Cell divisionFtsK/SpoIIIE; KEGG: mil:ML5_1658 hypothetical protein
YP_004336650.1	KEGG: cai:Caci_6923 hypothetical protein
YP_004336651.1	PFAM: IstB-like ATP-binding protein; KEGG: tpr:Tpau_1025 IstB domain protein ATP-binding protein
YP_004336652.1	PFAM: Polysaccharide biosynthesis protein; KEGG: rop:ROP_57940 putative polysaccharide biosynthesis protein
YP_004336653.1	PFAM: Methyltransferase type 11; KEGG: sfu:Sfum_3434 methyltransferase type 11
YP_004336654.1	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: nfa:pnf220 putative chromosome partitioning protein; SMART: ParB-like nuclease
YP_004336655.1	KEGG: mkm:Mkms_5580 putative plasmid partitioning protein
YP_004336656.1	PFAM: Integrase, catalytic core; KEGG: nml:Namu_3083 integrase catalytic subunit
YP_004336659.1	PFAM: Transposase, Tn3; KEGG: sro:Sros_4723 transposase, Tn3 family
YP_004336660.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004336661.1	PFAM: Cation efflux protein; KEGG: sco:SCO3521 integral membrane protein
YP_004336662.1	KEGG: sco:SCO3522 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004336663.1	KEGG: fra:Francci3_2363 resolvase-like protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal
YP_004336664.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004336665.1	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: hla:Hlac_2992 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004336667.1	KEGG: sgr:SGR_6027 putative integral membrane protein; PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase
YP_004336668.1	PFAM: Cytochrome c assembly protein, transmembrane domain; KEGG: msp:Mspyr1_25040 cytochrome c biogenesis protein
YP_004336669.1	PFAM: Redoxin; KEGG: mgi:Mflv_3216 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004336670.1	KEGG: ach:Achl_4522 hypothetical protein
YP_004336671.1	KEGG: gbr:Gbro_2650 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004336672.1	TIGRFAM: Mercury reductase, MerA; KEGG: mil:ML5_4212 mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004336674.1	PFAM: Integrase, catalytic core, phage; KEGG: fal:FRAAL3720 putative integrase
YP_004336675.1	KEGG: mkm:Mkms_5581 hypothetical protein
YP_004336676.1	PFAM: Amidase; KEGG: sro:Sros_0559 amidase
YP_004336678.1	PFAM: Luciferase-like, subgroup; KEGG: yen:YE1950 alkanesulfonate monooxygenase
YP_004336679.1	KEGG: nca:Noca_4063 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal
YP_004336680.1	PFAM: MaoC-like dehydratase; KEGG: nca:Noca_4064 dehydratase
YP_004336681.1	KEGG: sro:Sros_6624 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III
YP_004336682.1	KEGG: nca:Noca_4073 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain
YP_004336683.1	KEGG: amd:AMED_6293 TrpR binding protein WrbA; TIGRFAM: Flavoprotein WrbA; PFAM: Flavodoxin/nitric oxide synthase
YP_004336684.1	PFAM: Amidase; KEGG: nfa:nfa12060 putative amidase
YP_004336685.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: sli:Slin_1265 alpha/beta hydrolase fold protein
YP_004336686.1	PFAM: MmgE/PrpD; KEGG: bxe:Bxe_A4086 hypothetical protein
YP_004336687.1	manually curated; PFAM: Flavin reductase-like, FMN-binding; KEGG: fre:Franean1_4843 flavin reductase domain-containing protein; SMART: Flavin reductase-like, FMN-binding
YP_004336688.1	KEGG: svi:Svir_17410 hypothetical protein
YP_004336689.1	KEGG: rcu:RCOM_2060150 hypothetical protein
YP_004336690.1	PFAM: NLP/P60; KEGG: mil:ML5_6031 nlp/p60 protein
YP_004336691.1	KEGG: sro:Sros_1963 hypothetical protein
YP_004336692.1	KEGG: scl:sce6360 hypothetical protein
YP_004336693.1	KEGG: gob:Gobs_0687 ATP-binding protein
YP_004336694.1	KEGG: gob:Gobs_0686 hypothetical protein
YP_004336695.1	KEGG: gob:Gobs_0685 hypothetical protein
YP_004336696.1	KEGG: gob:Gobs_0684 hypothetical protein
YP_004336698.1	KEGG: nca:Noca_4716 hypothetical protein
YP_004336699.1	PFAM: Transglycosylase-like; KEGG: zro:ZYRO0F02728g hypothetical protein
YP_004336701.1	KEGG: mgi:Mflv_1504 hypothetical protein
YP_004336702.1	KEGG: mab:MAB_0630 hypothetical protein
YP_004336705.1	KEGG: esc:Entcl_2744 cell wall surface anchor family protein
YP_004336706.1	KEGG: stp:Strop_4198 hypothetical protein
YP_004336707.1	KEGG: hsa:4583 mucin 2, oligomeric mucus/gel-forming
YP_004336709.1	KEGG: tpr:Tpau_3922 hypothetical protein
YP_004336710.1	KEGG: amd:AMED_1799 hypothetical protein
YP_004336713.1	KEGG: ade:Adeh_1681 PE-PGRS family protein
YP_004336715.1	KEGG: bbr:BB1120 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal
YP_004336716.1	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; KEGG: bbr:BB1122 two-component system sensor kinase; SMART: ATPase-like, ATP-binding domain; PAS
YP_004336717.1	KEGG: bbr:BB1126 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal
YP_004336718.1	KEGG: cti:RALTA_A1472 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004336719.1	PFAM: Crotonase, core; KEGG: bbr:BB1123 enoyl-CoA hydratase
YP_004336720.1	KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal
YP_004336721.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rer:RER_51930 MFS transporter
YP_004336722.1	KEGG: tcu:Tcur_1474 enoyl-CoA hydratase; PFAM: MaoC-like dehydratase
YP_004336723.1	KEGG: bbr:BB1125 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase
YP_004336724.1	TIGRFAM: Thiolase; KEGG: tbi:Tbis_3121 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal
YP_004336725.1	PFAM: Transposase IS3/IS911family; KEGG: mva:Mvan_2521 transposase IS3/IS911 family protein
YP_004336726.1	PFAM: Integrase, catalytic core; KEGG: mva:Mvan_2522 integrase catalytic subunit
YP_004336728.1	KEGG: tbi:Tbis_2163 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004336729.1	KEGG: mbt:JTY_3127 putative alkyldihydroxyacetonephosphate synthase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004336730.1	manually curated; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: sen:SACE_3508 GntR family transcriptional regulator; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004336731.1	manually curated; KEGG: cai:Caci_8461 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III
YP_004336732.1	manually curated; KEGG: svi:Svir_18170 isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase
YP_004336733.1	KEGG: cai:Caci_3926 hypothetical protein
YP_004336734.1	KEGG: art:Arth_0469 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004336736.1	KEGG: rha:RHA1_ro08154 dehydratase/racemase; PFAM: CoA-transferase family III
YP_004336737.1	PFAM: Crotonase, core; KEGG: mul:MUL_0536 enoyl-CoA hydratase
YP_004336738.1	PFAM: Transposase, IS4-like; KEGG: mau:Micau_5192 transposase IS4 family protein
YP_004336739.1	KEGG: saq:Sare_3350 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal
YP_004336740.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: fri:FraEuI1c_6427 integrase family protein
YP_004336746.1	KEGG: amd:AMED_0080 hypothetical protein
YP_004336747.1	PFAM: Protein of unknown function DUF1173; KEGG: sna:Snas_5425 hypothetical protein
YP_004336749.1	KEGG: kfl:Kfla_2184 type IV secretory pathway VirD4 protein-like protein
YP_004336750.1	KEGG: kfl:Kfla_0387 hypothetical protein
YP_004336753.1	KEGG: tcu:Tcur_0423 hypothetical protein
YP_004336754.1	KEGG: scb:SCAB_57051 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004336758.1	KEGG: ami:Amir_1461 hypothetical protein
YP_004336759.1	KEGG: cmi:pCM2_0003 hypothetical protein
YP_004336763.1	KEGG: fre:Franean1_1320 nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease
YP_004336766.1	KEGG: art:Arth_4330 hypothetical protein
YP_004336767.1	KEGG: ach:Achl_3985 hypothetical protein
YP_004336768.1	KEGG: pth:PTH_2463 hypothetical protein
YP_004336769.1	PFAM: Primosome PriB/single-strand DNA-binding; KEGG: dge:Dgeo_0165 single-strand binding protein
YP_004336770.1	PFAM: Transcription factor WhiB; KEGG: mil:ML5_3052 transcription factor WhiB
YP_004336773.1	KEGG: stp:Strop_0062 hypothetical protein; PFAM: DNA primase/polymerase, bifunctional, N-terminal; SMART: DNA primase/polymerase, bifunctional, N-terminal
YP_004336777.1	KEGG: ace:Acel_1555 hypothetical protein
YP_004336780.1	PFAM: DNA recombination-mediator protein A; KEGG: svi:Svir_09850 DNA protecting protein DprA
YP_004336787.1	KEGG: mno:Mnod_4618 translation initiation factor IF-2
YP_004336788.1	KEGG: art:Arth_3833 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004336789.1	PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2; KEGG: msp:Mspyr1_54900 multicopper oxidase
YP_004336790.1	PFAM: Protein of unknown function DUF2078, membrane; KEGG: msp:Mspyr1_54890 membrane protein (DUF2078)
YP_004336791.1	PFAM: Domain of unknown function DUF302; KEGG: sco:SCO0165 hypothetical protein
YP_004336792.1	PFAM: Protein of unknown function DUF81; KEGG: sen:SACE_2431 membrane permease protein
YP_004336793.1	KEGG: mau:Micau_2767 rhodanese domain-containing protein; PFAM: Beta-lactamase-like; SMART: Rhodanese-like; Beta-lactamase-like
YP_004336794.1	KEGG: rop:ROP_00410 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004336795.1	PFAM: Protein of unknown function DUF156; KEGG: sen:SACE_5796 hypothetical protein
YP_004336796.1	PFAM: Transposase, mutator type; KEGG: rha:RHA1_ro08487 transposase mutator family protein
YP_004336797.1	PFAM: Integrase, catalytic core; KEGG: nml:Namu_3083 integrase catalytic subunit
YP_004336798.1	KEGG: swd:Swoo_0201 signal recognition particle-docking protein FtsY
YP_004336800.1	HAMAP: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: sgr:SGR_785 putative NADH dehydrogenase chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004336801.1	TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: sgr:SGR_786 putative NADH dehydrogenase chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004336802.1	KEGG: sgr:SGR_787 putative NADH dehydrogenase chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004336803.1	KEGG: sro:Sros_3680 NADH-ubiquinone oxidoreductase, chain 4L; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K
YP_004336804.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: sgr:SGR_789 putative NADH dehydrogenase chain J
YP_004336805.1	KEGG: sgr:SGR_790 putative NADH dehydrogenase chain H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H
YP_004336806.1	KEGG: sro:Sros_3683 hypothetical protein
YP_004336807.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: sgr:SGR_792 putative NADH dehydrogenase chain A
YP_004336808.1	PFAM: Domain of unknown function DUF305; KEGG: nfa:nfa38100 hypothetical protein
YP_004336810.1	KEGG: amd:AMED_8813 high-affinity nickel-transport protein; TIGRFAM: Nickel/cobalt transporter, high-affinity, bacteria; PFAM: Nickel/cobalt transporter, high-affinity
YP_004336811.1	PFAM: Protein of unknown function DUF156; KEGG: mkm:Mkms_0157 hypothetical protein
YP_004336812.1	KEGG: fre:Franean1_5745 heavy metal transport/detoxification protein; TIGRFAM: Copper ion-binding; PFAM: Heavy metal transport/detoxification protein
YP_004336813.1	KEGG: sen:SACE_4147 secreted protein
YP_004336814.1	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: fre:Franean1_5747 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004336816.1	KEGG: srt:Srot_2293 S-adenosylmethionine synthetase; manually curated; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; HAMAP: S-adenosylmethionine synthetase
YP_004336818.1	PFAM: Methyltransferase type 11; KEGG: sfu:Sfum_3434 methyltransferase type 11
YP_004336819.1	PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: fri:FraEuI1c_5602 filamentation induced by cAMP protein Fic
YP_004991158.1	KEGG: nfa:pnf11430 hypothetical protein
YP_004991161.1	KEGG: nfa:pnf11480 hypothetical protein
YP_004991164.1	KEGG: lcb:LCABL_26070 possible cell surface protein
YP_004991165.1	PFAM: Helix-turn-helix type 3; KEGG: tpr:Tpau_4134 putative DNA-binding protein
YP_004991167.1	manually curated; KEGG: amd:AMED_0903 hypothetical protein
YP_004991168.1	KEGG: amd:AMED_7102 hypothetical protein
YP_004991169.1	PFAM: Amidohydrolase 1; KEGG: amd:AMED_0901 amidohydrolase
YP_004991170.1	KEGG: tcu:Tcur_0281 hypothetical protein
YP_004991171.1	KEGG: scl:sce6360 hypothetical protein
YP_004991172.1	KEGG: nda:Ndas_1294 helix-turn-helix domain protein
YP_004991173.1	KEGG: sen:SACE_3387 bile acid-coenzyme A ligase; PFAM: AMP-dependent synthetase/ligase
YP_004991174.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: sme:SM_b20534 hypothetical protein
YP_004991175.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rha:RHA1_ro09044 ABC peptide transporter, ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004991176.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rha:RHA1_ro09045 ABC peptide transporter, ATP-binding component; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal
YP_004991177.1	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: fre:Franean1_3398 extracellular solute-binding protein
YP_004991178.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09046 ABC peptide transporter, permease component
YP_004991179.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro09047 ABC peptide transporter, permease component
YP_004991180.1	PFAM: Amidohydrolase 2; KEGG: fri:FraEuI1c_1470 amidohydrolase 2
YP_004991181.1	KEGG: ami:Amir_5343 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI
YP_004991182.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: ami:Amir_4009 oxidoreductase domain protein
YP_004991183.1	PFAM: Protein of unknown function DUF993; KEGG: ami:Amir_4008 hypothetical protein
YP_004991184.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: mau:Micau_3038 xylose isomerase domain-containing protein
YP_004991185.1	TIGRFAM: Glycerate kinase; KEGG: fra:Francci3_4457 glycerate kinase; PFAM: Glycerate kinase
YP_004991186.1	PFAM: Uncharacterised protein family YphA; KEGG: amd:AMED_7198 hypothetical protein
YP_004991187.1	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: swi:Swit_4311 extradiol ring-cleavage dioxygenase III subunit B
YP_004991188.1	KEGG: svi:Svir_14840 transcriptional regulator/sugar kinase; PFAM: ROK
YP_004991189.1	KEGG: rha:RHA1_ro10212 phthalate 3,4-dioxygenase ferredoxin subunit
YP_004991190.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bja:bll7609 Rieske (2Fe-2S) domain-containing protein
YP_004991191.1	PFAM: Amidohydrolase 2; KEGG: oca:OCAR_6791 amidohydrolase family
YP_004991192.1	PFAM: Major facilitator superfamily MFS-1; KEGG: rxy:Rxyl_2344 major facilitator transporter
YP_004991193.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: art:Arth_1913 oxidoreductase domain-containing protein
YP_004991194.1	PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: cai:Caci_5338 xylose isomerase domain protein TIM barrel
YP_004991195.1	PFAM: Xylose isomerase, TIM barrel domain; KEGG: ttr:Tter_2313 oxidoreductase domain protein
YP_004991196.1	PFAM: Ferredoxin soy-like; KEGG: rha:RHA1_ro10212 phthalate 3,4-dioxygenase ferredoxin subunit
YP_004991197.1	KEGG: kfl:Kfla_4098 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004991198.1	KEGG: ate:Athe_2312 hypothetical protein
YP_004991199.1	KEGG: nml:Namu_3667 transposase mutator type; manually curated; PFAM: Transposase, mutator type
YP_004991201.1	KEGG: mbt:JTY_3207 hypothetical protein
YP_004991202.1	PFAM: Transglycosylase-like; KEGG: yli:YALI0C11165g YALI0C11165p
YP_004991203.1	KEGG: mva:Mvan_5243 hypothetical protein
YP_004991204.1	KEGG: tcu:Tcur_0128 chromosome partitioning ATPase
YP_004991205.1	KEGG: kfl:Kfla_2555 hypothetical protein
YP_004991206.1	KEGG: ami:Amir_0167 PE-PGRS family protein
YP_004991207.1	PFAM: Helix-turn-helix type 3; KEGG: amd:AMED_1799 hypothetical protein
YP_004991208.1	KEGG: bcv:Bcav_1798 hypothetical protein
YP_004991209.1	PFAM: NLP/P60; KEGG: mil:ML5_6031 nlp/p60 protein
YP_004991210.1	KEGG: kfl:Kfla_2197 bifunctional DNA primase/polymerase; PFAM: DNA primase/polymerase, bifunctional, N-terminal; SMART: DNA primase/polymerase, bifunctional, N-terminal
YP_004991212.1	KEGG: tbi:Tbis_3041 hypothetical protein
YP_004991213.1	TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: svi:Svir_39470 primary replicative DNA helicase; SMART: ATPase, AAA+ type, core
YP_004991214.1	PFAM: Transposase, mutator type; KEGG: mbt:JTY_3135 putative transposase
YP_004991216.1	PFAM: Zeta toxin; KEGG: fra:Francci3_2358 zeta toxin
YP_004991217.1	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: fri:FraEuI1c_6427 integrase family protein
YP_004991218.1	PFAM: Transposase, mutator type; KEGG: nml:Namu_3667 transposase mutator type
YP_004991219.1	manually curated; KEGG: sen:SACE_3788 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; Cysteine-rich domain
YP_004991220.1	KEGG: gob:Gobs_1823 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type
YP_004991221.1	manually curated; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: svi:Svir_08590 transcriptional regulator; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR
YP_004991223.1	KEGG: reu:Reut_B3850 ethyl tert-butyl ether degradation EthD; TIGRFAM: Ethyl tert-butyl ether degradation EthD; PFAM: Ethyl tert-butyl ether degradation EthD
YP_004991224.1	KEGG: min:Minf_1839 NAD-dependent aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain
YP_004991225.1	KEGG: fra:Francci3_2519 oxidoreductase FAD-binding region; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding
YP_004991226.1	PFAM: Methane/phenol/toluene hydroxylase; KEGG: nca:Noca_4809 methane monooxygenase
YP_004991227.1	PFAM: Monooxygenase component MmoB/DmpM; KEGG: gbr:Gbro_3554 monooxygenase component MmoB/DmpM
YP_004991228.1	manually curated; KEGG: fra:Francci3_1236 hypothetical protein
YP_004991229.1	KEGG: cai:Caci_7826 aldehyde dehydrogenase; manually curated; PFAM: Aldehyde dehydrogenase domain
YP_004991230.1	KEGG: mkm:Mkms_4453 Mn2+/Fe2+ transporter; TIGRFAM: Natural resistance-associated macrophage protein; PFAM: Natural resistance-associated macrophage protein
YP_004991231.1	PFAM: Transposase, IS116/IS110/IS902; KEGG: sma:SAV_634 IS110 family transposase
YP_004991232.1	KEGG: mau:Micau_6070 integrase catalytic domain-containing protein; manually curated; PFAM: Integrase, catalytic core
YP_004991233.1	KEGG: sco:SCO6394 IS element ATP binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004991234.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: msp:Mspyr1_01360 transposase
YP_004991235.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: mau:Micau_4072 transposase IS116/IS110/IS902 family protein
YP_004991236.1	KEGG: aau:AAur_pTC10275 hypothetical protein
YP_004991237.1	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: nfa:pnf120 putative plasmid partitioning protein; SMART: ParB-like nuclease
YP_004991238.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: svi:Svir_22160 chromosome partitioning ATPase
YP_004991240.1	KEGG: ace:Acel_1025 hypothetical protein
YP_004991244.1	KEGG: fal:FRAAL6348 hypothetical protein
YP_004991245.1	manually curated; PFAM: Helix-turn-helix type 3; KEGG: nda:Ndas_2376 helix-turn-helix domain protein; SMART: Helix-turn-helix type 3
YP_004991246.1	PFAM: Transcription factor WhiB; KEGG: pak:HMPREF0675_4328 transcription factor WhiB
YP_004991247.1	KEGG: nfa:nfa7460 hypothetical protein
YP_004991250.1	KEGG: sna:Snas_6255 hypothetical protein
YP_004991253.1	KEGG: fri:FraEuI1c_5828 hypothetical protein
YP_004991254.1	PFAM: Transcription factor WhiB; KEGG: sen:SACE_6464 WhiB family transcriptional regulator
YP_004991255.1	PFAM: Streptomyces sporulation/cell division protein SsgA; KEGG: fri:FraEuI1c_2318 sporulation and cell division protein SsgA