; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855/genome/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855_stop_codons.wc -o $RSAT/public_html/data/genomes/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855/genome/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855_stop_codon_frequencies ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855/genome/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855_stop_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855/genome/Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855_stop_codon_frequencies ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 4866 ; Sum of sequence lengths 14598 ; discarded residues (other letters than ACGT) ; discarded occurrences (contain discarded residues) ; nb possible positions 4866 ; total oligo occurrences 4866 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ taa taa 0.5263049732840 2561 tga tga 0.3859432799014 1878 tag tag 0.0877517468146 427 ; Host name rsat-tagc ; Job started 2014-06-20.022726 ; Job done 2014-06-20.022726 ; Seconds 0.35 ; user 0.35 ; system 0.02 ; cuser 0 ; csystem 0