-- dump date   	20120504_160154
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002972839.1	PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ret:RHE_PF00480 two-component sensor histidine kinase protein
YP_002972840.1	KEGG: ret:RHE_PF00481 sugar ABC transporter, substrate-binding protein
YP_002972841.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00482 sugar ABC transporter, ATP binding protein
YP_002972842.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PF00483 sugar ABC transporter, permease protein
YP_002972843.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PF00484 sugar ABC transporter, permease protein
YP_002972844.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ret:RHE_PF00485 gluconolactonase precursor protein
YP_002972845.1	KEGG: vei:Veis_3689 hypothetical protein
YP_002972846.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO2584 glyoxalase family protein
YP_002972847.1	PFAM: IS66 Orf2 family protein; KEGG: transposase
YP_002972848.1	PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PD00122 hypothetical protein
YP_002972849.1	PFAM: major facilitator superfamily MFS_1; KEGG: sme:SM_b20338 putative efflux protein
YP_002972850.1	PFAM: regulatory protein TetR; KEGG: sme:SM_b20337 putative transcriptional regulator protein
YP_002972851.1	PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: rec:RHECIAT_PA0000198 putative epoxide hydrolase protein
YP_002972852.1	KEGG: atc:AGR_pAT_742 conserved hypothetical protein
YP_002972853.1	PFAM: protein of unknown function DUF182; KEGG: hypothetical protein ; K07402 xanthine dehydrogenase accessory factor
YP_002972854.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dehydrogenase
YP_002972855.1	PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: oxidoreductase
YP_002972856.1	PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: oxidoreductase with iron-sulfur subunit
YP_002972857.1	PFAM: Creatininase; KEGG: rec:RHECIAT_PC0000101 probable creatininase protein
YP_002972858.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH02047 LysR family transcriptional regulator
YP_002972859.1	PFAM: NMT1/THI5 like domain protein; KEGG: ret:RHE_CH02046 nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
YP_002972860.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH02045 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
YP_002972861.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02044 nitrate/sulfonate/bicarbonate ABC transporter permease
YP_002972862.1	PFAM: Amidohydrolase 3; amidohydrolase; KEGG: ret:RHE_CH02043 cytosine deaminase
YP_002972863.1	PFAM: FAD linked oxidase domain protein; KEGG: rec:RHECIAT_PC0000095 putative FAD linked oxidase protein
YP_002972864.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: ret:RHE_CH02041 NAD(P)H dehydrogenase protein
YP_002972865.1	PFAM: Endoribonuclease L-PSP; KEGG: translation initiation inhibitor protein
YP_002972866.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PC0000675 methyl accepting chemotaxis protein
YP_002972867.1	PFAM: ferric iron reductase; KEGG: ret:RHE_PF00468 ferric iron reductase protein
YP_002972868.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ret:RHE_PF00469 ferrichrome-iron transporter, receptor protein
YP_002972869.1	PFAM: PilT protein domain protein; KEGG: gox:GOX2696 plasmid stabilization protein
YP_002972870.1	KEGG: swi:Swit_3888 hypothetical protein
YP_002972871.1	PFAM: regulatory protein TetR; KEGG: bja:blr7984 transcriptional regulatory protein
YP_002972872.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ret:RHE_PA00005 hypothetical protein
YP_002972873.1	PFAM: AAA-4 family protein; KEGG: hypothetical cytosolic protein
YP_002972874.1	KEGG: sme:SMa2301 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002972875.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: transcriptional regulator protein
YP_002972876.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_CH00609 oligopeptide ABC transporter, substrate-binding protein
YP_002972877.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: appB; oligopeptide ABC transporter ; K02033 peptide/nickel transport system permease protein
YP_002972878.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: appC; oligopeptide ABC transporter ; K02034 peptide/nickel transport system permease protein
YP_002972879.1	PFAM: dihydrodipicolinate synthetase; KEGG: dapAch1; dihydrodipicolinate synthase protein ; K01714 dihydrodipicolinate synthase
YP_002972880.1	KEGG: ret:RHE_CH00605 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002972881.1	KEGG: ret:RHE_CH00604 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002972882.1	PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_CH0000678 putative N-acetylneuraminate lyase subunit protein
YP_002972883.1	PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: reh:H16_A1299 transcriptional regulator, IclR-family
YP_002972884.1	PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_2532 extracellular solute-binding protein, family 5
YP_002972885.1	KEGG: bav:BAV2615 poly(aspartic acid) hydrolase
YP_002972886.1	KEGG: rpd:RPD_2474 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_002972887.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein
YP_002972888.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1562 ABC transporter, permease protein
YP_002972889.1	KEGG: bav:BAV1561 ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002972890.1	KEGG: bav:BAV1560 ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002972891.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_PF00470 hypothetical protein
YP_002972892.1	PFAM: OmpA/MotB domain protein; KEGG: rec:RHECIAT_PC0000696 probable outer membrane lipoprotein
YP_002972893.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_PF00474 TetR family transcriptional regulator
YP_002972894.1	KEGG: rec:RHECIAT_PC0000707 putative hydrolase protein
YP_002972895.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_PF00476 transcriptional regulator protein
YP_002972896.1	PFAM: RES domain protein; KEGG: mes:Meso_4168 hypothetical protein
YP_002972897.1	KEGG: hypothetical protein
YP_002972898.1	PFAM: glycoside hydrolase family 38; Glycoside hydrolase family 38 central region; glycosyl hydrolase 38 domain protein; KEGG: rec:RHECIAT_PC0000709 putative alpha-mannosidase protein
YP_002972899.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ret:RHE_PE00360 LacI family transcriptional regulator
YP_002972900.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00359 sugar ABC transporter, substrate-binding protein
YP_002972901.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00358 sugar ABC transporter, permease protein
YP_002972902.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00357 sugar ABC transporter, permease protein
YP_002972903.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00356 sugar ABC transporter, ATP-binding protein
YP_002972904.1	KEGG: ret:RHE_PE00355 putative inulin fructotransferase protein
YP_002972905.1	PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; KEGG: ret:RHE_PE00354 putative beta-fructofuranosidase protein
YP_002972907.1	KEGG: rec:RHECIAT_PC0000979 putative transcriptional regulator protein, ROK family
YP_002972908.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_PF00564 oxidoreductase protein
YP_002972909.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000981 putative sugar ABC transporter, substrate-binding protein
YP_002972910.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000982 putative sugar ABC transporter, permease protein
YP_002972911.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000983 putative sugar ABC transporter, permease protein
YP_002972912.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_PC0000984 probable transcriptional regulator protein, ROK family
YP_002972913.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rec:RHECIAT_PC0000985 putative xylose isomerase domain protein
YP_002972914.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00570 sugar ABC transporter, ATP-binding protein
YP_002972915.1	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: rec:RHECIAT_PC0000003 hypothetical protein
YP_002972916.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_002972917.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_002972918.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_PC0000006 hydrogen peroxide sensing transcriptional regulator protein, LysR family
YP_002972919.1	TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: ret:RHE_PF00004 catalase protein
YP_002972920.1	KEGG: rec:RHECIAT_PC0000010 hypothetical protein
YP_002972921.1	KEGG: scl:sce1418 sensor histidine kinase
YP_002972922.1	PFAM: protein of unknown function DUF1486; Limonene-12-epoxide hydrolase; KEGG: rec:RHECIAT_PC0000014 hypothetical protein
YP_002972923.1	PFAM: helix-turn-helix HxlR type; KEGG: rec:RHECIAT_PC0000015 putative transcriptional regulator protein
YP_002972924.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rec:RHECIAT_PC0000016 probable zinc-dependent oxidoreductase protein
YP_002972925.1	PFAM: thioesterase superfamily protein; KEGG: ret:RHE_PF00012 thioesterase protein
YP_002972926.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rec:RHECIAT_PC0000018 putative long-chain-fatty-acid--CoA ligase protein
YP_002972927.1	KEGG: ret:RHE_PF00014 acetyl-CoA acetyltransferase (beta-ketothiolase) protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_002972928.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:blr7595 hypothetical protein
YP_002972929.1	PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_PF00017 hypothetical protein
YP_002972930.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00018 hypothetical protein
YP_002972931.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_002972932.1	TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: rec:RHECIAT_PC0000025 putative ribonuclease protein
YP_002972935.1	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: oca:OCAR_7492 protein-L-isoaspartate
YP_002972936.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_PC0000167 putative acetyltransferase protein
YP_002972937.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sugar ABC transporter
YP_002972938.1	KEGG: hypothetical protein
YP_002972939.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K02026 multiple sugar transport system permease protein
YP_002972940.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K02025 multiple sugar transport system permease protein
YP_002972941.1	PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter
YP_002972942.1	TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: rec:RHECIAT_PC0000976 probable dihydroxyacetone kinase protein, phosphatase domain
YP_002972943.1	PFAM: Dak kinase; KEGG: rec:RHECIAT_PC0000975 probable dihydroxyacetone kinase protein, kinase domain
YP_002972944.1	KEGG: rec:RHECIAT_PC0000974 hypothetical protein
YP_002972945.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_PF00033 oxidoreductase protein
YP_002972946.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000972 putative ribose ABC transporter, permease protein
YP_002972947.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000971 probable ribose ABC transporter, ATP-binding protein
YP_002972948.1	KEGG: rec:RHECIAT_PC0000970 hypothetical protein
YP_002972949.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_PC0000969 probable ribose ABC transporter, substrate-binding protein
YP_002972950.1	KEGG: ret:RHE_PF00038 hypothetical protein
YP_002972951.1	PFAM: type III effector Hrp-dependent outers; KEGG: rec:RHECIAT_PC0000965 hypothetical protein
YP_002972952.1	PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rec:RHECIAT_PC0000964 ribulose bisphosphate carboxylaseoxygenase protein, large subunit
YP_002972953.1	Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization
YP_002972954.1	KEGG: rec:RHECIAT_PC0000032 hypothetical protein
YP_002972955.1	KEGG: rec:RHECIAT_PC0000054 hypothetical protein
YP_002972956.1	KEGG: ret:RHE_PF00065 putative two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_002972957.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_PC0000057 probable transcriptional regulator protein, GntR family
YP_002972958.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ret:RHE_PF00068 C4-dicarboxylate ABC transporter, substrate-binding protein
YP_002972959.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ret:RHE_PF00069 C4-dicarboxylate ABC transporter permease
YP_002972960.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rec:RHECIAT_PC0000060 probable C4-dicarboxylate ABC transporter, permease protein
YP_002972961.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rec:RHECIAT_PC0000061 probable zinc-dependent alcohol dehydrogenase protein
YP_002972962.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_PC0000064 probable transcriptional regulator protein, GntR family
YP_002972963.1	PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000063 putative dihydrodipicolinate synthetase protein
YP_002972964.1	PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PC0000062 putative oxidoreductase protein, NAD-binding site
YP_002972965.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_PF00438 alanine catabolic operon transcription regulator
YP_002972966.1	KEGG: ret:RHE_PF00437 alanine racemase protein; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_002972967.1	catalyzes the oxidative deamination of D-amino acids
YP_002972968.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PF00435 AraC family transcriptional regulator
YP_002972969.1	KEGG: rec:RHECIAT_CH0002235 probable hippurate hydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20
YP_002972970.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_002972971.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_002972972.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: smd:Smed_5075 putative transcriptional regulator, AsnC family
YP_002972973.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_002972974.1	PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ret:RHE_PF00433 MerR family transcriptional regulator
YP_002972975.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002972976.1	KEGG: rec:RHECIAT_PC0000636 hypothetical protein
YP_002972977.1	PFAM: TadE family protein; KEGG: rec:RHECIAT_PC0000635 hypothetical protein
YP_002972978.1	KEGG: ret:RHE_PF00423 hypothetical protein
YP_002972980.1	member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002972981.1	KEGG: ret:RHE_PF00421 putative amicyanin protein
YP_002972982.1	KEGG: ret:RHE_PF00420 hypothetical protein
YP_002972983.1	PFAM: protein of unknown function DUF488; KEGG: rec:RHECIAT_PC0000611 hypothetical protein
YP_002972984.1	KEGG: rec:RHECIAT_PC0000608 hypothetical protein
YP_002972985.1	PFAM: Aldehyde Dehydrogenase; KEGG: rec:RHECIAT_PC0000932 putative salicylaldehyde dehydrogenase protein
YP_002972986.1	catalyzes the formation of 5-alpha-androstane-3,17-dione from androsterone; Acts on other 3-alpha-hydroxysteroids and on 9-, 11- and 15-hydroxyprostaglandin.
YP_002972987.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000930 putative branched-chain amino acid ABC transporter, permease protein
YP_002972988.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000929 putative branched-chain amino acid ABC transporter, permease protein
YP_002972989.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000928 putative branched-chain amino acid ABC transporter, ATP-binding protein
YP_002972990.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000927 putative branched-chain amino acid ABC transporter, ATP-binding protein
YP_002972991.1	KEGG: rec:RHECIAT_PC0000926 putative branched-chain amino acid ABC transporter, substrate-binding protein
YP_002972992.1	PFAM: Aldehyde Dehydrogenase; KEGG: rec:RHECIAT_PC0000925 putative short-chain dehydrogenase protein
YP_002972993.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PC0000924 probable transcriptional regulator protein, AraC family
YP_002972994.1	PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: two component sensor kinase
YP_002972995.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: two component response regulator
YP_002972996.1	KEGG: hypothetical protein LOC100019413
YP_002972997.1	KEGG: hypothetical protein LOC687617
YP_002972998.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002087 adenylate/guanylate cyclase protein
YP_002972999.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_PC0000923 probable transcriptional regulator protein, MarR family
YP_002973000.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rec:RHECIAT_PC0000922 feruloyl-CoA synthetase protein
YP_002973001.1	catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA
YP_002973002.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_PC0000920 putative aryl-alcohol dehydrogenase protein
YP_002973003.1	PFAM: Aldehyde Dehydrogenase; KEGG: rec:RHECIAT_PC0000919 coniferyl-aldehyde dehydrogenase protein
YP_002973004.1	KEGG: ret:RHE_PF00417 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; 5TM Receptors of the LytS-YhcK type transmembrane region; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein
YP_002973005.1	TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ret:RHE_PF00416 formate dehydrogenase alpha chain protein
YP_002973006.1	KEGG: ret:RHE_PF00415 hypothetical protein
YP_002973007.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PC0000597 probable transcriptional regulator protein, AraC family
YP_002973008.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: rec:RHECIAT_PC0000640 putative malate dehydrogenase protein
YP_002973009.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sil:SPO0164 oxidoreductase, FMN-binding/pyridine nucleotide-disulfide oxidoreductase
YP_002973010.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000594 probable glycine betaine/L-proline ABC transporter, ATP-binding protein
YP_002973011.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000593 probable glycine betaine/L-proline ABC transporter, permease protein
YP_002973012.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ret:RHE_PF00410 amino acid ABC transporter substrate-binding protein
YP_002973013.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: ret:RHE_PF00409 putative pyrroline-5-carboxylate reductase protein
YP_002973014.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_PF00408 TetR family transcriptional regulator
YP_002973015.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_PC0000589 2,4-dienoyl-CoA reductase (NADPH) protein
YP_002973016.1	KEGG: ret:RHE_PF00406 putative transcriptional regulator protein
YP_002973017.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rec:RHECIAT_CH0004062 electron transport flavoprotein, beta subunit
YP_002973018.1	PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: electron transfer flavoprotein alpha-subunit alpha-etf flavoprotein ; K03522 electron transfer flavoprotein alpha subunit
YP_002973019.1	KEGG: ret:RHE_PF00403 hypothetical protein
YP_002973020.1	TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: atc:AGR_C_3072 alcohol dehydrogenase / formaldehyde dehydrogenase (glutathione)
YP_002973021.1	KEGG: ret:RHE_PF00401 S-formylglutathione hydrolase protein; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase
YP_002973022.1	catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione
YP_002973023.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_PC0000580 probable transcriptional regulator protein, GntR family
YP_002973024.1	PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000579 dihydrodipicolinate synthase protein
YP_002973025.1	PFAM: Aldehyde Dehydrogenase; KEGG: rec:RHECIAT_PC0000578 aldehyde dehydrogenase protein
YP_002973026.1	PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PC0000577 putative oxidoreductase protein
YP_002973027.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ret:RHE_PF00395 glycine betaine/L-proline ABC transporter, substrate-binding protein
YP_002973028.1	KEGG: rec:RHECIAT_PC0000575 probable glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002973029.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000574 probable glycine betaine/L-proline ABC transporter, permease protein
YP_002973030.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00392 glycine betaine/L-proline ABC transporter, permease protein
YP_002973031.1	PFAM: proline racemase; KEGG: rec:RHECIAT_PC0000572 putative proline racemase protein
YP_002973032.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PF00390 AraC family transcriptional regulator
YP_002973033.1	PFAM: peptidase M24; creatinase; KEGG: rec:RHECIAT_PC0000570 putative proline dipeptidase protein
YP_002973034.1	PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: ret:RHE_PF00389 putative ferredoxin oxidoreductase protein
YP_002973035.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: rec:RHECIAT_PC0000568 putative Rieske [2Fe-2S] dioxygenase protein
YP_002973036.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_PC0000567 putative transcriptional regulator protein, LysR family
YP_002973037.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: ret:RHE_PF00386 hypothetical protein
YP_002973038.1	KEGG: rec:RHECIAT_PC0000125 putative sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002973039.1	KEGG: rec:RHECIAT_PC0000126 hypothetical protein
YP_002973040.1	PFAM: NmrA family protein; KEGG: ret:RHE_PE00142 hypothetical protein
YP_002973041.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_PE00143 LysR family transcriptional regulator
YP_002973042.1	KEGG: sme:SMa5009 hypothetical protein
YP_002973043.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: zmo:ZMO1576 short-chain alcohol dehydrogenase
YP_002973044.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002789 putative transporter protein, MFS family
YP_002973045.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smd:Smed_2350 transcriptional regulator, LysR family
YP_002973046.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_PC0000565 proline dehydrogenase transcriptional activator protein
YP_002973047.1	KEGG: rec:RHECIAT_PC0000564 hypothetical protein
YP_002973048.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain
YP_002973049.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mlo:mll2320 hypothetical protein
YP_002973050.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PE00103 putative mandelate racemase/muconate lactonizing enzyme protein
YP_002973051.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PE00102 hypothetical protein
YP_002973052.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PE00101 GntR family transcriptional regulator
YP_002973053.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00100 sugar ABC transporter, substrate-binding protein
YP_002973054.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr2327 permease protein of sugar ABC transporter
YP_002973055.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr2328 permease protein of sugar ABC transporter
YP_002973056.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00097 sugar ABC transporter, ATP-binding protein
YP_002973057.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PE00096 putative galactonate dehydratase protein
YP_002973058.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: ret:RHE_PE00095 hypothetical protein
YP_002973059.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PC0000033 sucrose operon repressor, transcriptional regulator protein, LacI family
YP_002973060.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00047 sucrose ABC transporter, substrate-binding protein
YP_002973061.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00048 sucrose ABC transporter, permease protein
YP_002973062.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00049 sucrose ABC transporter, permease protein
YP_002973063.1	PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; KEGG: rec:RHECIAT_PC0000037 beta-fructofuranosidase protein
YP_002973064.1	PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PD00122 hypothetical protein
YP_002973065.1	PFAM: IS66 Orf2 family protein; KEGG: transposase
YP_002973066.1	PFAM: transposase IS66; KEGG: transposase
YP_002973067.1	KEGG: bur:Bcep18194_A4938 hypothetical protein
YP_002973068.1	PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: kpe:KPK_1760 putative helicase
YP_002973069.1	KEGG: kpe:KPK_1759 hypothetical protein
YP_002973070.1	PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: pde:Pden_3350 plasmid pRiA4b ORF-3 family protein
YP_002973072.1	KEGG: rec:RHECIAT_PB0000023 hypothetical protein
YP_002973073.1	PFAM: Domain of unknown function DUF1814; KEGG: rpe:RPE_3256 hypothetical protein
YP_002973074.1	KEGG: atc:AGR_pTi_287 hypothetical protein
YP_002973075.1	PFAM: Integrase catalytic region; KEGG: atc:AGR_L_547 hypothetical protein
YP_002973076.1	PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PD00313 insertion sequence transposase protein
YP_002973077.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0004273 rhizopine ABC transporter, substrate-binding protein
YP_002973078.1	KEGG: vsa:VSAL_I0028 hypothetical protein
YP_002973079.1	SMART: helix-turn-helix domain protein; KEGG: smd:Smed_6375 transcriptional regulator, XRE family
YP_002973081.1	KEGG: ret:RHE_PD00012 hypothetical protein
YP_002973082.1	KEGG: rec:RHECIAT_PB0000304 hypothetical protein
YP_002973083.1	TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mlo:mlr5930 ferredoxin 2[4Fe-4S] III, FdxB
YP_002973084.1	PFAM: transposase IS66; KEGG: smd:Smed_6340 transposase IS66
YP_002973085.1	PFAM: transposase IS66; KEGG: xau:Xaut_5015 transposase IS66
YP_002973086.1	PFAM: IS66 Orf2 family protein; KEGG: ret:RHE_CH00774 insertion sequence transposase protein
YP_002973087.1	PFAM: transposase IS3/IS911 family protein; KEGG: xau:Xaut_4842 transposase IS3/IS911 family protein
YP_002973088.1	PFAM: acyltransferase 3; KEGG: bbt:BBta_p0211 hypothetical protein
YP_002973089.1	PFAM: MaoC domain protein dehydratase; KEGG: sme:SMa0874 NodN dehydratase
YP_002973090.1	TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: sme:SMc00231 D-fructose-6-phosphate amidotransferase
YP_002973091.1	KEGG: smd:Smed_6263 maltose O-acetyltransferase
YP_002973093.1	PFAM: Beta-ketoacyl synthase; KEGG: smd:Smed_6194 beta-ketoacyl synthase
YP_002973094.1	PFAM: phosphopantetheine-binding; KEGG: sme:SMa0852 NodF acyl carrier protein
YP_002973095.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: smd:Smed_6183 transcriptional regulator, LysR family
YP_002973096.1	catalyzes the transfer of a fatty acyl group onto Nod factor, beta-(1,4)-N-acetylglucosamine oligosaccharide
YP_002973097.1	PFAM: polysaccharide deacetylase; KEGG: sme:SMa0868 NodB chitooligosaccharide deacetylase
YP_002973098.1	PFAM: glycosyl transferase family 2; chitin synthase; KEGG: smd:Smed_6186 glycosyl transferase family 2
YP_002973099.1	ATP-binding subunit; with NodJ is involved in the export of lipo-chitin oligosaccharide; involved in nodulation induction
YP_002973100.1	TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: smd:Smed_6188 ABC-2 type transporter, NodJ family
YP_002973101.1	TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mlo:msl5852 hypothetical protein
YP_002973102.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_5932 ferredoxin
YP_002973103.1	TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: mlo:mll5855 nitrogen fixation protein NifB
YP_002973104.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mlo:mll5857 nif-specific regulatory protein,NifA
YP_002973105.1	KEGG: sme:SMa0816 FixX ferredoxin-like protein
YP_002973106.1	PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll5860 nitrogen fixation protein,FixC
YP_002973107.1	PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ret:RHE_PD00225 electron transfer flavoprotein alpha subunit protein
YP_002973108.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rec:RHECIAT_PB0000268 electron transfer flavoprotein, beta subunit
YP_002973109.1	nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis
YP_002973110.1	TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; KEGG: ret:RHE_PD00201 nitrogenase, iron-molybdenum alpha chain protein
YP_002973111.1	KEGG: ret:RHE_PD00306 nitrogenase, iron-molybdenum beta chain protein; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1
YP_002973112.1	TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; KEGG: mlo:mlr5908 nitrogenase molybdenum-cofactor synthesis protein NifE
YP_002973113.1	KEGG: mlo:mlr5909 nitrogenase molybdenum-iron protein beta chain, NifN; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1
YP_002973116.1	PFAM: ROK family protein; KEGG: bha:BH1094 transcriptional repressor of the xylose operon
YP_002973117.1	PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter
YP_002973118.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ypm:YP_1499 putative binding-protein-dependent transport system, inner membrane component
YP_002973119.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_3638 sugar ABC transporter, permease protein, putative
YP_002973120.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: stm:STM2753 putative dehydrogenase
YP_002973121.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcv:XCV2238 sugar ABC transporter ATP-binding protein
YP_002973122.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mcpA; methyl-accepting chemotaxis protein
YP_002973123.1	PFAM: ROK family protein; KEGG: bha:BH1094 transcriptional repressor of the xylose operon
YP_002973124.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bxe:Bxe_B1456 putative DegT/DnrJ/EryC1/StrS aminotransferase
YP_002973125.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bra:BRADO0040 putative haloacid dehalogenase-like hydrolase; putative phosphatase
YP_002973126.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1014 GCN5-related N-acetyltransferase
YP_002973127.1	KEGG: ypm:YP_1878 glycerophosphoryl diester phosphodiesterase
YP_002973130.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: atu:Atu5094 ISL3 family transposase
YP_002973131.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: ret:RHE_PF00499 CRP family transcriptional regulator
YP_002973132.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: ret:RHE_PF00500 membrane protein precursor
YP_002973133.1	TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_PF00501 cation transport ATPase protein
YP_002973134.1	PFAM: FixH family protein; KEGG: rec:RHECIAT_PB0000326 cation pump membrane (nitrogen fixation) protein
YP_002973135.1	TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ret:RHE_PF00503 ferrodoxin oxidase protein
YP_002973136.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: ret:RHE_PF00504 cytochrome c oxidase, FixP chain (cbb3-type subunit III) protein
YP_002973137.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: ret:RHE_PF00505 cytochrome c oxidase, FixQ chain protein
YP_002973138.1	CcoO; FixO
YP_002973139.1	CcoN; FixN
YP_002973140.1	PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mno:Mnod_8476 transcriptional regulator, GntR family
YP_002973142.1	PFAM: Protein of unknown function DUF1778; KEGG: maq:Maqu_4288 hypothetical protein
YP_002973143.1	KEGG: maq:Maqu_4287 GCN5-related N-acetyltransferase
YP_002973144.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hypothetical transcription regulator protein
YP_002973145.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002973146.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: xau:Xaut_2262 helix-turn-helix domain-containing protein
YP_002973147.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002973148.1	PFAM: domain of unknown function DUF1738; KEGG: rec:RHECIAT_PB0000154 probable DNA conjugal transfer antirestriction protein
YP_002973149.1	PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: hypothetical protein
YP_002973150.1	PFAM: TRAG family protein; KEGG: traG; Ti-type conjugative transfer system protein TraG ; K03205 type IV secretion system protein VirD4
YP_002973151.1	KEGG: mobilization protein C
YP_002973152.1	TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: traA; Ti-type conjugative transfer relaxase TraA
YP_002973153.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PC0000562 methyl-accepting chemotaxis protein
YP_002973154.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PF00383 putative epimerase protein
YP_002973155.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PF00382 putative epimerase protein
YP_002973156.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PF00381 putative mandelate racemase protein
YP_002973157.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PF00380 GntR family transcriptional regulator
YP_002973158.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ret:RHE_PF00379 putative phosphoglycerate dehydrogenase protein
YP_002973159.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00378 sugar ABC transporter, ATP-binding protein
YP_002973160.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00377 sugar ABC transporter, ATP-binding protein
YP_002973161.1	KEGG: smd:Smed_5861 hypothetical protein
YP_002973162.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00376 sugar ABC transporter, permease protein
YP_002973163.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00375 sugar ABC transporter, permease protein
YP_002973164.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00374 putative sugar ABC transporter, substrate-binding protein
YP_002973165.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_PF00373 TetR family transcriptional regulator
YP_002973166.1	PFAM: protein of unknown function UPF0261; KEGG: ret:RHE_PF00372 hypothetical protein
YP_002973167.1	KEGG: sme:SMa1332 hypothetical protein
YP_002973168.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00370 hypothetical protein
YP_002973169.1	PFAM: peptidase M24; creatinase; KEGG: ret:RHE_PF00369 proline M24 family dipeptidase
YP_002973170.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: ret:RHE_PF00368 hypothetical protein
YP_002973171.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PF00367 GntR family transcriptional regulator
YP_002973172.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: ret:RHE_PF00366 putative malate dehydrogenase protein
YP_002973173.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: ret:RHE_PF00365 putative alcohol dehydrogenase protein
YP_002973174.1	PFAM: Aldehyde Dehydrogenase; KEGG: ret:RHE_PF00364 succinate-semialdehyde dehydrogenase protein
YP_002973175.1	KEGG: ret:RHE_PF00363 putative esterase/lipase/thiestherase protein
YP_002973176.1	PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_PF00361 deaminase protein
YP_002973177.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_PC0000560 probable transcriptional regulator protein (leucine-responsive), AsnC family
YP_002973178.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000559 probable oligopeptide ABC transporter, ATP-binding protein
YP_002973179.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000558 probable oligopeptide ABC transporter, permease protein
YP_002973180.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000557 probable oligopeptide ABC transporter, permease protein
YP_002973181.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000556 probable oligopeptide ABC transporter, substrate-binding protein
YP_002973182.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); KEGG: rec:RHECIAT_PC0000555 putative 2-haloacid dehalogenase protein
YP_002973183.1	PFAM: aminotransferase class-III; KEGG: ret:RHE_PF00349 hypothetical protein
YP_002973184.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_PC0000553 putative acetyltransferase protein
YP_002973185.1	PFAM: type III effector Hrp-dependent outers; KEGG: rec:RHECIAT_PC0000552 hypothetical protein
YP_002973186.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PF00346 putative hydroxypyruvate isomerase protein
YP_002973187.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rec:RHECIAT_PC0000550 putative 3-hydroxyisobutyrate dehydrogenase protein
YP_002973188.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: transcriptional regulator protein ; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
YP_002973189.1	PFAM: class II aldolase/adducin family protein; KEGG: rec:RHECIAT_PC0000547 putative aldolase protein
YP_002973190.1	TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sme:SMa1851 putative dehalogenase
YP_002973191.1	PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_PF00341 FAD-dependent oxidoreductase protein
YP_002973192.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH01582 hypothetical protein
YP_002973193.1	KEGG: rec:RHECIAT_PA0000245 hypothetical protein
YP_002973194.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: hpp:HPP12_p02 MccB
YP_002973196.1	KEGG: rsh:Rsph17029_2960 peptidase S8 and S53, subtilisin, kexin, sedolisin
YP_002973197.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: rsp:RSP_1300 hypothetical protein
YP_002973198.1	KEGG: rsh:Rsph17029_2958 SARP family transcriptional regulator
YP_002973199.1	KEGG: rec:RHECIAT_PC0000544 succinate-semialdehyde dehydrogenase (NAD(P)(+)) protein; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase
YP_002973200.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_002973201.1	PFAM: Aldehyde Dehydrogenase; KEGG: rec:RHECIAT_PC0000542 putative aldehyde dehydrogenase (NAD(+)) protein
YP_002973202.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: rec:RHECIAT_PC0000541 hypothetical protein
YP_002973203.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rec:RHECIAT_PC0000540 putative D-2-hydroxyacid dehydrogenase protein
YP_002973204.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_002973205.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_PC0000538 putative acetyltransferase protein
YP_002973206.1	KEGG: rec:RHECIAT_PC0000537 hypothetical protein
YP_002973207.1	TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mlo:mll0364 hypothetical protein
YP_002973208.1	KEGG: ret:RHE_PF00333 hypothetical protein
YP_002973209.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_PC0000534 probable transcriptional regulator protein, LysR family
YP_002973210.1	PFAM: HPP family protein; CBS domain containing protein; KEGG: ret:RHE_PF00331 hypothetical protein
YP_002973211.1	KEGG: sme:SMa1192 hypothetical protein
YP_002973212.1	KEGG: rec:RHECIAT_PC0000531 hypothetical protein
YP_002973213.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_002973214.1	PFAM: chaperonin Cpn10; KEGG: ret:RHE_PF00329 10 kDa chaperonin, heat shock protein
YP_002973215.1	KEGG: ret:RHE_PF00328 hypothetical protein
YP_002973216.1	KEGG: rec:RHECIAT_PC0000527 hypothetical protein
YP_002973217.1	KEGG: rec:RHECIAT_PC0000525 hypothetical protein
YP_002973218.1	KEGG: ret:RHE_PF00325 hypothetical protein
YP_002973220.1	KEGG: rec:RHECIAT_CH0001117 hypothetical protein
YP_002973221.1	PFAM: histidine triad (HIT) protein; KEGG: pde:Pden_2683 histidine triad (HIT) protein
YP_002973222.1	KEGG: ret:RHE_PF00322 hypothetical protein
YP_002973223.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000519 putative sugar ABC transporter, substrate-binding protein
YP_002973224.1	PFAM: protein of unknown function DUF624; KEGG: ret:RHE_PF00320 hypothetical protein
YP_002973225.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00319 putative sugar ABC transporter, ATP-binding protein
YP_002973226.1	PFAM: glycosyl hydrolase family 88; KEGG: rec:RHECIAT_PC0000516 putative glucoronyl hydrolase protein
YP_002973227.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000515 probable sugar ABC transporter, permease protein
YP_002973228.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00316 sugar ABC transporter, permease protein
YP_002973229.1	PFAM: Heparinase II/III family protein; KEGG: rec:RHECIAT_PC0000513 hypothetical protein
YP_002973230.1	KEGG: rec:RHECIAT_PC0000512 hypothetical protein
YP_002973231.1	PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PF00313 AraC family transcriptional regulator
YP_002973232.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PF00312 isochorismatase protein
YP_002973234.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rec:RHECIAT_PC0000511 probable two-component response regulator protein
YP_002973235.1	PFAM: ATP-binding region ATPase domain protein; Two-component sensor kinase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_PF00310 two-component sensor histidine kinase protein
YP_002973236.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00309 amino acid ABC transporter permease
YP_002973237.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000508 probable ABC transporter, ATP-binding protein
YP_002973238.1	KEGG: rec:RHECIAT_PC0000507 probable ABC transporter, substrate-binding protein
YP_002973239.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_PC0000506 probable transcriptional regulator protein, GntR family
YP_002973240.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: rec:RHECIAT_PC0000505 hypothetical protein
YP_002973241.1	PFAM: plasmid stabilization system; KEGG: rec:RHECIAT_PC0000504 putative plasmid stabilization protein
YP_002973242.1	KEGG: rec:RHECIAT_PC0000503 putative transcriptional regulator protein, LacI family
YP_002973243.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PF00300 rhizopine ABC transporter, substrate-binding protein
YP_002973244.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: ret:RHE_PF00299 methyl-accepting chemotaxis protein
YP_002973245.1	KEGG: rec:RHECIAT_PC0000496 hypothetical protein
YP_002973246.1	PFAM: major facilitator superfamily MFS_1; General substrate transporter; protein of unknown function DUF1228; KEGG: bcn:Bcen_1565 major facilitator transporter
YP_002973247.1	PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_5020 3-oxoadipate enol-lactonase
YP_002973248.1	PFAM: monooxygenase FAD-binding; KEGG: bmj:BMULJ_03963 salicylate hydroxylase
YP_002973249.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator LysR family
YP_002973250.1	PFAM: major facilitator superfamily MFS_1; KEGG: bmj:BMULJ_04338 permease of the major facilitator superfamily
YP_002973251.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00297 sugar ABC transporter, substrate-binding protein
YP_002973252.1	KEGG: ret:RHE_PF00296 hypothetical protein
YP_002973253.1	PFAM: glycosyl hydrolase family 88; KEGG: ret:RHE_PF00295 hypothetical protein
YP_002973254.1	SMART: Parallel beta-helix repeat; KEGG: rec:RHECIAT_PC0000491 probable polygalacturonase protein
YP_002973255.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00293 sugar ABC transporter, ATP-binding protein
YP_002973256.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00292 sugar ABC transporter, permease protein
YP_002973257.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000488 probable sugar ABC transporter, permease protein
YP_002973258.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_PC0000487 probable transcriptional regulator protein, ROK family
YP_002973259.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PC0000486 probable transcriptional regulator protein, AraC family
YP_002973260.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PC0000485 probable transcriptional regulator protein, LacI family
YP_002973261.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_PC0000484 probable transcriptional regulator protein, TetR family
YP_002973262.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_PC0000483 probable protein secretion protein, HlyD family
YP_002973263.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_PC0000482 probable protein secretion protein, HlyD family
YP_002973264.1	PFAM: acriflavin resistance protein; KEGG: ret:RHE_PF00284 efflux transporter protein
YP_002973265.1	PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rec:RHECIAT_PC0000480 hypothetical protein
YP_002973266.1	PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rec:RHECIAT_PC0000479 probable nucleotide permease protein
YP_002973267.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PC0000478 putative methyl-accepting chemotaxis protein
YP_002973268.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: rec:RHECIAT_PC0000476 magnesium/cobalt transporter protein
YP_002973269.1	PFAM: beta-lactamase domain protein; KEGG: ret:RHE_PF00279 beta-lactamase-like domain-containing protein
YP_002973270.1	KEGG: rec:RHECIAT_PC0000471 hypothetical protein
YP_002973271.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rec:RHECIAT_PC0000470 putative alpha amylase protein
YP_002973272.1	KEGG: rec:RHECIAT_PC0000469 probable trehalose synthase protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; aminoglycoside phosphotransferase; SMART: alpha amylase catalytic sub domain
YP_002973273.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_002973274.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00271 iron ABC transporter, ATP-binding protein
YP_002973275.1	PFAM: transport system permease protein; ABC-3 protein; KEGG: rec:RHECIAT_PC0000463 putative iron ABC transporter, permease protein
YP_002973276.1	PFAM: periplasmic binding protein; KEGG: ret:RHE_PF00269 iron ABC transporter, substrate-binding protein
YP_002973278.1	KEGG: hypothetical protein LOC100080937
YP_002973279.1	KEGG: sus:Acid_0190 hypothetical protein
YP_002973280.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PF00268 putative hydrolase protein
YP_002973281.1	KEGG: ret:RHE_PF00267 hypothetical protein
YP_002973282.1	KEGG: rec:RHECIAT_PC0000459 hypothetical protein
YP_002973283.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; GAF domain protein; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PC0000458 probable two-component sensor histidine kinase/response regulator hybrid protein
YP_002973284.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: rec:RHECIAT_PC0000457 probable two-component sensor histidine kinase/response regulator hybrid protein
YP_002973285.1	KEGG: sme:SM_b20121 hypothetical protein
YP_002973286.1	KEGG: ret:RHE_PF00263 1,4-alpha-glucan branching protein; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_002973287.1	KEGG: rec:RHECIAT_PC0000455 4-alpha-glucanotransferase protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77
YP_002973288.1	KEGG: rec:RHECIAT_PC0000451 hypothetical protein
YP_002973290.1	KEGG: ret:RHE_PF00258 hypothetical protein
YP_002973291.1	KEGG: ret:RHE_PF00257 hypothetical protein
YP_002973293.1	KEGG: rec:RHECIAT_PC0000447 hypothetical protein
YP_002973294.1	KEGG: rec:RHECIAT_PC0000446 hypothetical protein
YP_002973295.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PC0000445 probable transcriptional regulator protein, LacI family
YP_002973296.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000444 glutamine ABC transporter, substrate binding protein
YP_002973297.1	KEGG: glutamine ABC transporter; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; SMART: AAA ATPase
YP_002973298.1	PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_PF00253 D-amino acid oxidase protein
YP_002973299.1	KEGG: rec:RHECIAT_PC0000441 hypothetical protein
YP_002973300.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_PF00249 putative metal-dependent hydrolase protein
YP_002973301.1	KEGG: rec:RHECIAT_PC0000437 hypothetical protein
YP_002973302.1	PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: rec:RHECIAT_PC0000436 probable phospholipase D protein
YP_002973303.1	PFAM: protein of unknown function DUF763; KEGG: rec:RHECIAT_PC0000435 hypothetical protein
YP_002973304.1	KEGG: smd:Smed_5578 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_002973305.1	KEGG: hypothetical protein
YP_002973306.1	PFAM: MscS Mechanosensitive ion channel; KEGG: small-conductance mechanosensitive channel transmembrane protein
YP_002973307.1	KEGG: nonspecific acid phosphatase precursor
YP_002973308.1	PFAM: protein of unknown function DUF323; KEGG: hypothetical protein
YP_002973309.1	KEGG: hypothetical protein
YP_002973310.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; von Willebrand factor type A; SMART: Tetratricopeptide domain protein; von Willebrand factor type A; KEGG: tetratricopeptide TPR_4
YP_002973311.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: von Willebrand factor, type A
YP_002973312.1	KEGG: hypothetical protein
YP_002973313.1	PFAM: protein of unknown function DUF58; KEGG: hypothetical protein
YP_002973314.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: methanol dehydrogenase regulator MoxR-like protein ; K03924 MoxR-like ATPase
YP_002973315.1	PFAM: sulfatase; KEGG: sulfatase (sulfuric ester hydrolase) protein
YP_002973316.1	PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: hypothetical protein
YP_002973317.1	KEGG: hypothetical protein
YP_002973318.1	KEGG: hypothetical protein
YP_002973320.1	PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: smd:Smed_5642 protein of unknown function DUF1214
YP_002973321.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_PF00245 multidrug ABC transporter permease
YP_002973322.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: atu:Atu0672 LysR family transcriptional regulator
YP_002973323.1	PFAM: conserved hypothetical protein; KEGG: atc:AGR_C_1202 hypothetical protein
YP_002973324.1	KEGG: oan:Oant_3072 putative ABC transporter periplasmic sugar-binding protein
YP_002973325.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sugar ABC transporter ; K10441 ribose transport system ATP-binding protein
YP_002973326.1	PFAM: inner-membrane translocator; KEGG: sugar ABC transporter ; K10440 ribose transport system permease protein
YP_002973327.1	PFAM: putative sugar-binding domain protein; KEGG: ret:RHE_PB00075 CRP family transcriptional regulator
YP_002973328.1	PFAM: aldo/keto reductase; KEGG: aldoketo reductase protein
YP_002973329.1	PFAM: FAD dependent oxidoreductase; KEGG: glycerol-3-phosphate dehydrogenase protein ; K00111 glycerol-3-phosphate dehydrogenase
YP_002973330.1	PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: oan:Oant_3078 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_002973331.1	PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_PB00071 L-xylulose kinase protein
YP_002973332.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sme:SM_b20496 GMC oxidoreductase protein
YP_002973333.1	PFAM: Cold-shock protein DNA-binding; Ribonuclease B OB region domain; SMART: Cold shock protein; KEGG: cspA; cold shock protein ; K03704 cold shock protein (beta-ribbon, CspA family)
YP_002973334.1	KEGG: hypothetical protein
YP_002973335.1	KEGG: ret:RHE_PF00244 hypothetical protein
YP_002973336.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mcpGd; methyl-accepting chemotaxis protein
YP_002973337.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: oan:Oant_4408 glutathione-dependent formaldehyde-activating GFA
YP_002973338.1	PFAM: alpha/beta hydrolase fold; KEGG: hydrolase protein
YP_002973339.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000432 dipeptide ABC transporter, ATP-binding protein
YP_002973340.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000431 dipeptide ABC transporter, ATP-binding protein
YP_002973341.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000430 dipeptide ABC transporter, permease protein
YP_002973342.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000429 dipeptide ABC transporter, permease protein
YP_002973343.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000428 dipeptide ABC transporter, substrate-binding protein
YP_002973344.1	PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000427 dihydrodipicolinate synthase protein
YP_002973345.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ret:RHE_PF00237 calcium-binding protein, regucalcin
YP_002973346.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_PC0000425 putative UDP-glucose 4-epimerase protein
YP_002973347.1	PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PF00235 GntR family transcriptional regulator
YP_002973348.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000423 probable oligopeptide ABC transporter, substrate-binding protein
YP_002973349.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00233 oligopeptide ABC transporter, permease protein
YP_002973350.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000421 probable oligopeptide ABC transporter, permease protein
YP_002973351.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00231 oligopeptide ABC transporter, ATP-binding protein
YP_002973352.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rec:RHECIAT_PC0000419 putative racemase protein
YP_002973353.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PF00229 putative isomerase protein
YP_002973354.1	PFAM: NADPH-dependent FMN reductase; KEGG: rec:RHECIAT_PC0000417 putative NADPH:quinone reductase protein
YP_002973355.1	PFAM: nitroreductase; KEGG: ret:RHE_PF00227 nitroreductase protein
YP_002973356.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ret:RHE_PF00226 ArsR family transcriptional regulator
YP_002973357.1	PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rec:RHECIAT_PC0000414 probable transcriptional regulator protein (NodW-like)
YP_002973358.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_PF00224 putative two-component response regulator protein
YP_002973359.1	PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rec:RHECIAT_PC0000412 two-component response regulator protein - NodW mutant supressor protein
YP_002973360.1	KEGG: ret:RHE_PF00222 two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: MASE1 domain protein; ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_002973361.1	PFAM: NmrA family protein; KEGG: rec:RHECIAT_PC0000410 hypothetical protein
YP_002973362.1	TIGRFAM: plasmid partitioning protein RepA; PFAM: Cobyrinic acid ac-diamide synthase; regulatory protein MerR; KEGG: rec:RHECIAT_PC0000407 plasmid partitioning protein RepAc1
YP_002973363.1	KEGG: rec:RHECIAT_PC0000406 plasmid partitioning protein RepBc1; TIGRFAM: plasmid partitioning protein RepB; parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; SMART: ParB domain protein nuclease
YP_002973364.1	PFAM: replication protein C; KEGG: ret:RHE_PF00212 plasmid replication protein RepCf2
YP_002973365.1	PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000127 dihydrodipicolinate synthase protein
YP_002973366.1	PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: rec:RHECIAT_PC0000128 probable transcriptional regulator protein, GntR family
YP_002973367.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000129 probable sugar ABC transporter, substrate-binding protein
YP_002973368.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00097 sugar ABC transporter, permease protein
YP_002973369.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000131 probable sugar ABC transporter, permease protein
YP_002973370.1	PFAM: PfkB domain protein; KEGG: rec:RHECIAT_PC0000132 probable carbohydrate kinase protein, PfkB family
YP_002973371.1	PFAM: phosphate transporter; KEGG: pit; phosphate transporter protein ; K03306 inorganic phosphate transporter, PiT family
YP_002973372.1	PFAM: protein of unknown function DUF47; KEGG: rec:RHECIAT_CH0001043 probable phosphate transporter regulator protein
YP_002973373.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00078 sn-glycerol-3-phosphate ABC transporter, substrate-binding protein
YP_002973374.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00079 sn-glycerol-3-phosphate ABC transporter, permease protein
YP_002973375.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00080 sn-glycerol-3-phosphate ABC transporter, permease protein
YP_002973376.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_002973377.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ret:RHE_PC00082 glycerophosphoryldiester phosphodiesterase protein
YP_002973378.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: ret:RHE_PC00083 glycerol-3-phosphate transcriptional regulator protein
YP_002973379.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; KEGG: ret:RHE_PC00084 hypothetical protein
YP_002973380.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K02026 multiple sugar transport system permease protein
YP_002973381.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K02025 multiple sugar transport system permease protein
YP_002973382.1	PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter
YP_002973383.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: mlo:mlr7217 transcriptional regulator
YP_002973384.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: lipase protein
YP_002973385.1	PFAM: oxidoreductase domain protein; KEGG: oxidoreductase protein
YP_002973386.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr7228 hypothetical protein
YP_002973387.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: transcriptional regulator protein
YP_002973388.1	PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: aldolase ; K01623 fructose-bisphosphate aldolase, class I
YP_002973389.1	PFAM: PfkB domain protein; KEGG: fructokinase protein
YP_002973390.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sugar ABC transporter ; K10112 maltose/maltodextrin transport system ATP-binding protein
YP_002973391.1	PFAM: oxidoreductase domain protein; KEGG: sme:SMc03812 putative oxidoreductase protein
YP_002973392.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMc03811 hypothetical protein
YP_002973393.1	PFAM: alpha/beta hydrolase fold; KEGG: sme:SMc03810 hypothetical protein
YP_002973394.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: mlo:mlr7233 ribulose-5-phosphate 3-epimerase
YP_002973395.1	PFAM: ROK family protein; KEGG: transcriptional regulator protein ; K00845 glucokinase
YP_002973396.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_PC0000398 myo-inositol 2-dehydrogenase protein
YP_002973397.1	KEGG: ret:RHE_PF00204 hypothetical protein
YP_002973398.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_PC0000396 probable adenosylmethionine--8-amino-7-oxononanoate aminotransferase protein
YP_002973399.1	PFAM: aminotransferase class-III; KEGG: ret:RHE_PF00202 hypothetical protein
YP_002973400.1	PFAM: Aldehyde Dehydrogenase; KEGG: rec:RHECIAT_PC0000395 probable succinate-semialdehyde dehydrogenase (NAD(P)(+)) protein
YP_002973401.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_PF00200 AsnC family transcriptional regulator
YP_002973402.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PF00188 GntR family transcriptional regulator
YP_002973403.1	KEGG: ret:RHE_PF00187 amino acid ABC transporter ATP-binding protein; TIGRFAM: ectoine/hydroxyectoine ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002973404.1	KEGG: rec:RHECIAT_PC0000380 probable amino acid ABC transporter, substrate-binding protein; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_002973405.1	TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000379 probable amino acid ABC transporter, permease protein
YP_002973406.1	TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuD; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000378 probable amino acid ABC transporter, permease protein
YP_002973407.1	TIGRFAM: ectoine utilization protein EutA; PFAM: Asp/Glu/hydantoin racemase; KEGG: rec:RHECIAT_PC0000377 putative arylmalonate decarboxylase protein
YP_002973408.1	catalyzes the formation of 2-oxobutanoate from L-threonine; involved in ectoine utilization
YP_002973409.1	putative cyclodeaminase
YP_002973410.1	TIGRFAM: ectoine utilization protein EutD; PFAM: creatinase; peptidase M24; KEGG: rec:RHECIAT_PC0000374 probable Xaa-Pro dipeptidase protein
YP_002973411.1	TIGRFAM: ectoine utilization protein EutE; PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: rec:RHECIAT_PC0000373 putative succinylglutamate desuccinylase/aspartoacylase family protein
YP_002973412.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PC0000372 probable methyl-accepting chemotaxis protein
YP_002973413.1	KEGG: ret:RHE_PF00177 hypothetical protein
YP_002973414.1	KEGG: ret:RHE_PF00176 hypothetical protein
YP_002973415.1	KEGG: ret:RHE_PF00175 hypothetical protein
YP_002973417.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella
YP_002973418.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002973419.1	the hook connects flagellar basal body to the flagellar filament
YP_002973420.1	SMART: Calcium-binding EF-hand-containing protein; KEGG: ret:RHE_PF00170 calcium-binding protein
YP_002973421.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_PF00169 transcription regulator TetR
YP_002973422.1	PFAM: protein of unknown function DUF1217; KEGG: ret:RHE_PF00168 hypothetical protein
YP_002973423.1	KEGG: atc:AGR_L_3430 putative McpA; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; PAC repeat-containing protein
YP_002973424.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002973425.1	PFAM: regulatory protein TetR; KEGG: msl:Msil_1985 transcriptional regulator, TetR family
YP_002973426.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000366 probable amino acid ABC transporter, substrate-binding protein
YP_002973427.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00166 amino acid ABC transporter permease
YP_002973428.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000364 probable amino acid ABC transporter, permease protein
YP_002973429.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00164 amino acid ABC transporter ATP-binding protein
YP_002973430.1	PFAM: PilT protein domain protein; KEGG: mes:Meso_4581 PilT protein-like
YP_002973431.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: mes:Meso_4580 prevent-host-death family protein
YP_002973432.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000361 probable amino acid ABC transporter, substrate-binding protein
YP_002973433.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00161 amino acid ABC transporter permease
YP_002973434.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000360 probable amino acid ABC transporter, permease protein
YP_002973435.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000359 probable amino acid ABC transporter, ATP-binding protein
YP_002973436.1	PFAM: plasmid stabilization system; KEGG: rec:RHECIAT_PC0000823 probable plasmid stabilization protein
YP_002973437.1	KEGG: gdj:Gdia_1735 putative addiction module antidote protein, CopG/Arc/MetJ family
YP_002973438.1	PFAM: RES domain protein; KEGG: sme:SM_b20695 hypothetical protein
YP_002973439.1	KEGG: sme:SM_b20696 hypothetical protein
YP_002973440.1	PFAM: PspA/IM30 family protein; KEGG: rec:RHECIAT_PC0000357 probable negative regulator protein PspA family (suppresses sigma54-dependent transcription)
YP_002973441.1	KEGG: rec:RHECIAT_PC0000356 hypothetical protein
YP_002973442.1	PFAM: Ion transport 2 domain protein; KEGG: rec:RHECIAT_PC0000355 putative cation transporter (potassium channel) protein
YP_002973443.1	KEGG: rec:RHECIAT_PC0000354 hypothetical protein
YP_002973444.1	PFAM: protein of unknown function DUF350; KEGG: rec:RHECIAT_PC0000353 hypothetical protein
YP_002973445.1	PFAM: protein of unknown function DUF1190; KEGG: rec:RHECIAT_PC0000352 hypothetical protein
YP_002973446.1	PFAM: glutathionylspermidine synthase; KEGG: rec:RHECIAT_PC0000351 putative glutathionylspermidine synthetase protein
YP_002973447.1	KEGG: ret:RHE_PD00189 hypothetical protein
YP_002973448.1	KEGG: ret:RHE_PD00190 putative insertion sequence transposase protein
YP_002973449.1	PFAM: Integrase catalytic region; KEGG: smd:Smed_4886 integrase catalytic region
YP_002973450.1	KEGG: ret:RHE_PD00189 hypothetical protein
YP_002973451.1	PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00190 putative insertion sequence transposase protein
YP_002973452.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: hypothetical protein
YP_002973454.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator protein
YP_002973455.1	PFAM: helix-turn-helix HxlR type; KEGG: eca:ECA2934 putative transcriptional regulator
YP_002973456.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bcm:Bcenmc03_2497 NADP oxidoreductase coenzyme F420-dependent
YP_002973457.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_CH02362 LacI family transcription regulator
YP_002973458.1	PFAM: inner-membrane translocator; KEGG: sugar ABC transporter
YP_002973459.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sugar ABC transporter
YP_002973460.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hydroxypyruvate isomerase protein ; K01816 hydroxypyruvate isomerase
YP_002973461.1	PFAM: oxidoreductase domain protein; CoA-binding domain protein; Oxidoreductase domain; KEGG: mlo:mll1000 dehydrogenase
YP_002973462.1	KEGG: hypothetical protein
YP_002973463.1	PFAM: plasmid stabilization system; KEGG: hypothetical protein
YP_002973464.1	TIGRFAM: addiction module antidote protein, CC2985 family; KEGG: hypothetical protein
YP_002973465.1	KEGG: cti:RALTA_A1335 putative prolyl aminopeptidase, LuxR DNA binding domain C_term
YP_002973466.1	PFAM: major facilitator superfamily MFS_1; KEGG: lch:Lcho_4332 major facilitator transporter
YP_002973467.1	KEGG: hypothetical protein
YP_002973468.1	PFAM: GTPase EngC; KEGG: hypothetical protein ; K06949 ribosome biogenesis GTPase
YP_002973471.1	KEGG: rce:RC1_1703 glycerol metabolism activator AgmR
YP_002973472.1	PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bid:Bind_1769 amine oxidase
YP_002973473.1	PFAM: sodium/hydrogen exchanger; KEGG: ret:RHE_CH03359 Na+/H+ antiporter protein
YP_002973474.1	PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sme:SM_b20483 putative catabolite repressor protein
YP_002973476.1	KEGG: smd:Smed_3639 putative ABC transporter periplasmic sugar-binding protein
YP_002973477.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SM_b20485 putative sugar ABC transporter ATP-binding protein
YP_002973478.1	PFAM: inner-membrane translocator; KEGG: sme:SM_b20486 putative sugar ABC transporter permease protein
YP_002973479.1	PFAM: inner-membrane translocator; KEGG: smd:Smed_3636 inner-membrane translocator
YP_002973480.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SM_b20488 hypothetical protein
YP_002973481.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_002973482.1	PFAM: FAD dependent oxidoreductase; KEGG: glycerol-3-phosphate dehydrogenase protein ; K00111 glycerol-3-phosphate dehydrogenase
YP_002973483.1	PFAM: carbohydrate kinase FGGY; KEGG: lyxX; L-xylulose kinase protein ; K00880 L-xylulokinase
YP_002973484.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: transcriptional regulator protein
YP_002973485.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ribose ABC transporter ; K10439 ribose transport system substrate-binding protein
YP_002973486.1	PFAM: inner-membrane translocator; KEGG: ribose ABC transporter ; K10440 ribose transport system permease protein
YP_002973487.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ribose ABC transporter ; K10441 ribose transport system ATP-binding protein
YP_002973488.1	KEGG: hypothetical protein
YP_002973489.1	PFAM: carbohydrate kinase FGGY; KEGG: lyxX; L-xylulose kinase protein
YP_002973490.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_002973491.1	KEGG: D-erythrulose 4-phosphate dehydrogenase
YP_002973492.1	PFAM: putative sugar-binding domain protein; KEGG: smoC; sorbitol/mannitol operon transcriptional regulator protein
YP_002973493.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: glpRb; glycerol-3-phosphate transcriptional regulator protein
YP_002973494.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002973495.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_002973496.1	TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: rec:RHECIAT_PA0000196 putative ATP-dependent DNA ligase protein
YP_002973497.1	KEGG: hypothetical protein
YP_002973498.1	KEGG: hypothetical protein
YP_002973499.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00093 sugar ABC transporter, permease protein
YP_002973500.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000120 probable sugar ABC transporter, permease protein
YP_002973501.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000119 probable sugar ABC transporter, substrate-binding protein
YP_002973502.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00090 sugar ABC transporter, ATP-binding protein
YP_002973503.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: UDP-glucose 4-epimerase protein
YP_002973504.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: transcriptional regulator protein
YP_002973505.1	catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_002973506.1	PFAM: TrkA-C domain protein; Citrate transporter; KEGG: oan:Oant_3754 TrkA-C domain protein
YP_002973507.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: bbr:BB4684 putative malate/L-lactate dehydrogenase
YP_002973508.1	PFAM: extracellular solute-binding protein family 5; KEGG: atc:AGR_pAT_98 chain A, dipeptide binding protein complex with glycyl-L-leucine
YP_002973509.1	PFAM: dihydrodipicolinate synthetase; KEGG: rsp:RSP_3655 5-dehydro-4-deoxyglucarate dehydratase
YP_002973510.1	PFAM: Aldehyde Dehydrogenase; KEGG: sme:SM_b20262 putative semialdehyde dehydrogenase protein
YP_002973511.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: ret:RHE_PC00045 hypothetical protein
YP_002973512.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: reu:Reut_B4643 mandelate racemase/muconate lactonizing protein
YP_002973513.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_002973514.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: azc:AZC_2647 transcriptional regulatory protein
YP_002973515.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: mpo:Mpop_4878 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
YP_002973516.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SM_b20141 putative oligopeptide ABC transporter ATP-binding protein
YP_002973517.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b20142 putative oligopeptide ABC transporter permease protein
YP_002973518.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b20143 putative oligopeptide ABC transporter permease protein
YP_002973519.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: sme:SM_b20112 hypothetical protein
YP_002973520.1	KEGG: smd:Smed_4426 hypothetical protein
YP_002973521.1	PFAM: NUDIX hydrolase; KEGG: ret:RHE_PF00086 putative NTP pyrophosphohydrolase protein
YP_002973522.1	KEGG: rec:RHECIAT_PC0000134 hypothetical protein
YP_002973523.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rec:RHECIAT_CH0002612 hypothetical protein
YP_002973524.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: azc:AZC_4208 ABC transporter ATP-binding protein
YP_002973525.1	TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: sme:SM_b21373 putative sugar kinase protein
YP_002973526.1	PFAM: sugar isomerase (SIS); KEGG: aeh:Mlg_2865 glutamine--fructose-6-phosphate transaminase
YP_002973527.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_4515 binding-protein-dependent transport systems inner membrane component
YP_002973528.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2296 binding-protein-dependent transport systems inner membrane component
YP_002973529.1	PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_4557 extracellular solute-binding protein family 1
YP_002973530.1	PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gox:GOX1475 putative N-acetylglucosamine kinase
YP_002973531.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: sml:Smlt4437 putative aga operon DeoR family transcriptional repressor
YP_002973532.1	PFAM: glycoside hydrolase family 4; KEGG: pla:Plav_1937 glycoside hydrolase family protein
YP_002973533.1	PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swp:swp_2451 transcriptional regulator, AraC family
YP_002973534.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: flavin reductase protein
YP_002973535.1	PFAM: peptidase M24; KEGG: map1; methionine aminopeptidase protein
YP_002973536.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: potC; spermidine/putrescine ABC transporter
YP_002973537.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: polyamine ABC transporter
YP_002973538.1	PFAM: extracellular solute-binding protein family 1; KEGG: ABC transporter, substrate binding protein
YP_002973539.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ABC transporter
YP_002973540.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: amino acid ABC transporter
YP_002973541.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amino acid ABC transporter
YP_002973542.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hypothetical protein
YP_002973543.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: transcriptional regulator protein
YP_002973544.1	KEGG: psa:PST_0152 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002973545.1	KEGG: GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein
YP_002973546.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; SMART: ATP-binding region ATPase domain protein; KEGG: rpc:RPC_3862 signal transduction histidine kinase
YP_002973547.1	KEGG: aba:Acid345_4767 antibiotic biosynthesis monooxygenase domain protein
YP_002973548.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: aglR; transcriptional regulator protein ; K02529 LacI family transcriptional regulator
YP_002973549.1	PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein
YP_002973550.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K02025 multiple sugar transport system permease protein
YP_002973551.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K02026 multiple sugar transport system permease protein
YP_002973552.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sugar ABC transporter
YP_002973553.1	KEGG: hypothetical protein
YP_002973554.1	KEGG: cti:RALTA_A0065 antitoxin of a toxin/antitoxin system
YP_002973555.1	PFAM: SMC domain protein; KEGG: nwi:Nwi_0907 hypothetical protein
YP_002973556.1	PFAM: metallophosphoesterase; KEGG: nwi:Nwi_0908 exonuclease SbcD
YP_002973557.1	PFAM: Aldehyde Dehydrogenase; KEGG: pla:Plav_2376 aldehyde dehydrogenase
YP_002973558.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_002973559.1	KEGG: ret:RHE_PF00477 hypothetical protein
YP_002973560.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: bpy:Bphyt_4892 dimethylmenaquinone methyltransferase
YP_002973561.1	PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bpt:Bpet0874 IclR family transcriptional regulator
YP_002973562.1	PFAM: extracellular solute-binding protein family 5; KEGG: oca:OCAR_6076 ABC transporter
YP_002973563.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5079 binding-protein-dependent transport systems inner membrane component
YP_002973564.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3987 binding-protein-dependent transport systems inner membrane component
YP_002973565.1	KEGG: bce:BC1182 oligopeptide transport ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002973566.1	KEGG: bav:BAV0997 oligopeptide ABC transporter,ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002973567.1	KEGG: rec:RHECIAT_PA0000112 putative C-terminal processing peptidase protein; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein
YP_002973568.1	PFAM: MEKHLA domain protein; KEGG: hypothetical protein
YP_002973569.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: hippurate hydrolase protein
YP_002973570.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amino acid ABC transporter
YP_002973571.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amino acid ABC transporter
YP_002973572.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: amino acid ABC transporter
YP_002973573.1	KEGG: hypothetical protein
YP_002973574.1	PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: transcriptional regulator protein
YP_002973575.1	PFAM: response regulator receiver; SMART: response regulator receiver; regulatory protein LuxR; KEGG: ret:RHE_PF00479 two-component response regulator protein
YP_002973852.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_002973853.1	PFAM: saccharopine dehydrogenase; KEGG: rec:RHECIAT_CH0000398 probable saccharopine dehydrogenase protein (NAD(+), L-lysine-forming)
YP_002973854.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002973855.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_002973856.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00362 lactoylglutathione lyase protein
YP_002973857.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_002973858.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_002973859.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_002973860.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: rec:RHECIAT_CH0000405 inosine-adenosine-guanosine preferring nucleoside hydrolase protein
YP_002973861.1	PFAM: heat shock protein Hsp20; KEGG: ret:RHE_CH00367 molecular chaperone small heat shock protein
YP_002973862.1	PFAM: protein of unknown function DUF1150; KEGG: rec:RHECIAT_CH0000407 hypothetical protein
YP_002973863.1	KEGG: ret:RHE_CH02662 hypothetical protein
YP_002973865.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_002973866.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002973867.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ret:RHE_CH00371 transcriptional regulator protein
YP_002973868.1	transfers the fatty acyl group on membrane lipoproteins
YP_002973869.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0001286 probable adenylate cyclase protein
YP_002973870.1	KEGG: msl:Msil_1919 hypothetical protein
YP_002973871.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bpy:Bphyt_4729 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_002973873.1	PFAM: Acetamidase/Formamidase; KEGG: swi:Swit_0965 formamidase
YP_002973874.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sbl:Sbal_4073 (acyl-carrier-protein) phosphodiesterase
YP_002973875.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: eca:ECA2654 GntR family transcriptional regulator
YP_002973876.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: bph:Bphy_6989 alkylhydroperoxidase
YP_002973877.1	TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: oan:Oant_1078 chorismate mutase
YP_002973878.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: rec:RHECIAT_CH0000413 hemolysin protein
YP_002973879.1	PFAM: protein of unknown function UPF0054; KEGG: rec:RHECIAT_CH0000414 hypothetical protein
YP_002973880.1	PFAM: PhoH family protein; KEGG: rec:RHECIAT_CH0000415 phosphate starvation inducible protein
YP_002973881.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_002973882.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rec:RHECIAT_CH0000417 1-acyl-sn-glycerol-3-phosphate acyltransferase (phospholipid/glycerol acyltransferase) protein
YP_002973883.1	PFAM: ferric-uptake regulator; KEGG: rec:RHECIAT_CH0000418 ferric uptake regulation protein
YP_002973884.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000419 ribosomal-protein-alanine N-acetyltransferase protein
YP_002973885.1	PFAM: peptidase M22 glycoprotease; KEGG: ret:RHE_CH00380 O-sialoglycoprotein endopeptidase protein
YP_002973886.1	PFAM: Scaffold protein Nfu/NifU ; nitrogen-fixing NifU domain protein; KEGG: rec:RHECIAT_CH0000421 nitrogen fixation protein
YP_002973887.1	PFAM: UspA domain protein; KEGG: ret:RHE_CH00382 universal stress protein
YP_002973888.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002973889.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00384 glyoxalase protein
YP_002973890.1	PFAM: peptidase M15A; protein of unknown function DUF882; KEGG: rec:RHECIAT_CH0000425 hypothetical protein
YP_002973891.1	PFAM: regulatory protein TetR; KEGG: mes:Meso_3334 transcriptional regulator, TetR family
YP_002973892.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_3360 NAD-dependent epimerase/dehydratase family protein
YP_002973893.1	KEGG: reh:H16_A1246 hypothetical protein
YP_002973894.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: rec:RHECIAT_CH0000426 virulence factor transmembrane protein
YP_002973895.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_002973896.1	KEGG: rec:RHECIAT_CH0000428 hypothetical protein
YP_002973897.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002973898.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_002973899.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0000431 transcriptional regulator protein
YP_002973900.1	KEGG: rec:RHECIAT_CH0000432 hypothetical protein
YP_002973901.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0000433 two-component sensor histidine kinase/response regulator hybrid protein
YP_002973902.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002973903.1	PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ret:RHE_CH00393 rRNA methylase
YP_002973904.1	KEGG: rec:RHECIAT_CH0000436 probable SAM-dependent methyltransferase protein
YP_002973905.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0000437 hydrolase protein, MutT/NUDIX family
YP_002973906.1	PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rec:RHECIAT_CH0000438 hypothetical protein
YP_002973907.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000439 acetyltransferase protein
YP_002973908.1	KEGG: ret:RHE_CH00398 hypothetical protein
YP_002973909.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_002973910.1	TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: rec:RHECIAT_CH0000442 proteinase IV protein
YP_002973911.1	PFAM: protein of unknown function DUF1239; KEGG: rec:RHECIAT_CH0000443 hypothetical protein
YP_002973912.1	PFAM: OstA family protein; KEGG: rec:RHECIAT_CH0000444 hypothetical protein
YP_002973913.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000445 probable amino acid ABC transporter, ATP-binding protein
YP_002973914.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_002973915.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0000447 permease protein
YP_002973916.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rec:RHECIAT_CH0000448 probable sigma 54 modulation protein
YP_002973917.1	TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rec:RHECIAT_CH0000449 protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of the phosphotransferase system)
YP_002973919.1	PFAM: PfkB domain protein; KEGG: ret:RHE_CH00409 ribose kinase protein
YP_002973920.1	PFAM: protein of unknown function DUF195; KEGG: rec:RHECIAT_CH0000452 DNA recombination protein
YP_002973921.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0000453 probable methyl-accepting chemotaxis protein
YP_002973922.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002973923.1	KEGG: rec:RHECIAT_CH0000455 probable plasmid stabilization protein
YP_002973924.1	PFAM: PilT protein domain protein; KEGG: ret:RHE_CH00413 plasmid stability protein
YP_002973925.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_002973926.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002973927.1	KEGG: ret:RHE_CH00416 hypothetical protein
YP_002973928.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_002973929.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_002973930.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000462 hypothetical protein
YP_002973931.1	SMART: Calcium-binding EF-hand-containing protein; KEGG: ret:RHE_CH00420 hypothetical protein
YP_002973932.1	TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0000464 hydrolase protein
YP_002973933.1	KEGG: ret:RHE_CH00423 methylated-DNA-[protein]-cysteine S-methyltransferase protein; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Ada metal-binding domain protein; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type
YP_002973934.1	KEGG: ret:RHE_CH00424 carboxyphosphonoenolpyruvate phosphonomutase protein
YP_002973935.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ret:RHE_CH00425 L-lactate dehydrogenase (cytochrome) protein
YP_002973936.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_002973937.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rec:RHECIAT_CH0000470 RNA polymerase sigma-70 factor protein, ECF family
YP_002973938.1	KEGG: rec:RHECIAT_CH0000471 hypothetical protein
YP_002973939.1	PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: rec:RHECIAT_CH0000472 transforming growth factor-induced protein (and secreted protein MPB70)
YP_002973940.1	PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rec:RHECIAT_CH0000473 probable two-component sensor histidine kinase protein
YP_002973941.1	KEGG: ret:RHE_CH00433 hypothetical protein
YP_002973942.1	KEGG: ret:RHE_CH00434 hypothetical protein
YP_002973943.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0000476 probable cold shock protein
YP_002973944.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002973945.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_002973946.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_002973947.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_002973948.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0000481 methyl-accepting chemotaxis protein
YP_002973949.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0000482 two-component sensor histidine kinase protein
YP_002973950.1	KEGG: hypothetical protein
YP_002973951.1	KEGG: ret:RHE_CH03206 hypothetical protein
YP_002973952.1	PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_CH0004115 hypothetical protein
YP_002973953.1	KEGG: bur:Bcep18194_A6246 hypothetical protein
YP_002973954.1	KEGG: atc:AGR_L_287 hypothetical protein
YP_002973956.1	KEGG: rec:RHECIAT_CH0000509 hypothetical protein
YP_002973957.1	KEGG: rec:RHECIAT_CH0000510 hypothetical protein
YP_002973958.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr7575 O-methyl transferase
YP_002973959.1	KEGG: rec:RHECIAT_CH0000511 hypothetical protein
YP_002973960.1	KEGG: rec:RHECIAT_CH0000512 hypothetical protein
YP_002973961.1	KEGG: rec:RHECIAT_CH0000513 hypothetical protein
YP_002973962.1	PFAM: methyltransferase type 12; KEGG: ret:RHE_CH00448 phospholipid N-methyltransferase protein
YP_002973963.1	PFAM: regulatory protein TetR; KEGG: transcriptional regulator protein
YP_002973964.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0000515 probable oxidoreductase protein
YP_002973965.1	PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rec:RHECIAT_CH0000517 hypothetical protein
YP_002973966.1	PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_CH00451 D-amino acid dehydrogenase protein
YP_002973967.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: oxidoreductase protein
YP_002973968.1	PFAM: proline racemase; KEGG: ret:RHE_CH00452 proline racemase protein
YP_002973969.1	PFAM: transposase IS4 family protein; KEGG: ecd:ECDH10B_2558 IS186/IS421 transposase
YP_002973970.1	PFAM: regulatory protein TetR; KEGG: rpt:Rpal_2059 transcriptional regulator, TetR family
YP_002973971.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: atc:AGR_pAT_252 hypothetical protein
YP_002973972.1	KEGG: rec:RHECIAT_CH0000527 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002973973.1	KEGG: smd:Smed_4441 hypothetical protein
YP_002973974.1	PFAM: RbsD or FucU transport; KEGG: ret:RHE_CH00463 fucose dissimilation pathway protein
YP_002973975.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0000535 sugar transcriptional regulator protein, ROK family
YP_002973976.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH00465 fructose ABC transporter, substrate-binding protein
YP_002973977.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0000537 fructose ABC transporter, permease protein
YP_002973978.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000538 fructose ABC transporter, ATP-binding protein
YP_002973979.1	KEGG: ret:RHE_CH00468 fructose transport system kinase
YP_002973980.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_002973981.1	KEGG: ret:RHE_CH00470 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002973982.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000542 glyoxalase protein
YP_002973983.1	PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hne:HNE_3446 ISHne3, transposase
YP_002973984.1	PFAM: glutathione S-transferase domain; KEGG: mlo:mlr2042 glutathione S-transferase
YP_002973985.1	KEGG: rec:RHECIAT_CH0000543 hypothetical conserved membrane protein
YP_002973986.1	PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: rpd:RPD_2341 NmrA-like
YP_002973987.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH00473 TetR family transcriptional regulator
YP_002973988.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002973989.1	PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0000546 fructokinase protein
YP_002973990.1	PFAM: regulatory protein ArsR; hypothetical protein; SMART: regulatory protein ArsR; KEGG: ret:RHE_CH00427 ArsR family transcriptional regulator
YP_002973991.1	PFAM: fatty acid desaturase; KEGG: ret:RHE_CH00426 fatty acid desaturase protein
YP_002973992.1	KEGG: ret:RHE_CH00476 trehalose-6-phosphate synthase protein; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20
YP_002973993.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_002973994.1	activates fatty acids by binding to coenzyme A
YP_002973995.1	PFAM: PRC-barrel domain protein; KEGG: rec:RHECIAT_CH0000550 hypothetical protein
YP_002973996.1	PFAM: glycoside hydrolase family 2 sugar binding; KEGG: rec:RHECIAT_CH0000551 beta-mannosidase protein
YP_002973997.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00481 lactoylglutathione lyase protein
YP_002973998.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000553 probable proline/glycine betaine ABC transporter, permease protein
YP_002973999.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000554 probable proline/glycine betaine ABC transporter, ATP-binding protein
YP_002974000.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000555 probable proline/glycine betaine ABC transporter, permease protein
YP_002974001.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ret:RHE_CH00485 glycine betaine ABC transporter, substrate binding protein
YP_002974002.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0000558 probable transcriptional regulator protein, LysR family
YP_002974003.1	PFAM: CutC family protein; KEGG: rec:RHECIAT_CH0000559 copper homeostasis protein
YP_002974004.1	PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: rec:RHECIAT_CH0000560 probable Zn-dependent alcohol dehydrogenase protein
YP_002974005.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0000561 probable sugar ABC transporter, permease protein
YP_002974006.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH00491 sugar ABC transporter, ATP-binding protein
YP_002974007.1	KEGG: ret:RHE_CH00492 sugar ABC transporter, substrate-binding protein
YP_002974008.1	PFAM: RbsD or FucU transport; KEGG: ret:RHE_CH00493 fucose dissimilation pathway protein
YP_002974009.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0000565 L-fucose dehydrogenase protein
YP_002974010.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: rec:RHECIAT_CH0000566 probable altronate dehydratase protein
YP_002974011.1	PFAM: GntR domain protein; regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0000567 probable transcriptional regulator protein
YP_002974012.1	PFAM: transposase IS4 family protein; KEGG: ecl:EcolC_3640 transposase IS4 family protein
YP_002974013.1	PFAM: ABC transporter; ABC transporter; SbmABacA family protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000570 probable ABC transporter, ATP-binding protein
YP_002974014.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cak:Caul_1741 MarR family transcriptional regulator
YP_002974015.1	KEGG: cak:Caul_1742 hypothetical protein
YP_002974017.1	PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: reh:H16_A2216 SAM-dependent methyltransferase
YP_002974018.1	KEGG: rec:RHECIAT_PC0000028 hypothetical protein
YP_002974019.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH00498 multidrug transport protein
YP_002974020.1	KEGG: ret:RHE_CH00499 hypothetical protein
YP_002974021.1	TIGRFAM: addiction module antidote protein; KEGG: rru:Rru_A3082 transcriptional regulator
YP_002974022.1	TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: btr:Btr_1092 hypothetical protein
YP_002974023.1	KEGG: rec:RHECIAT_CH0000575 hypothetical protein
YP_002974024.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: rec:RHECIAT_CH0000578 probable dioxygenase protein
YP_002974025.1	KEGG: rec:RHECIAT_CH0000580 transcriptional regulator protein
YP_002974026.1	PFAM: protein of unknown function DUF344; KEGG: ret:RHE_CH00507 hypothetical protein
YP_002974027.1	KEGG: ret:RHE_CH00508 phosphate regulon, two-component sensor histidine kinase protein; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_002974028.1	KEGG: rec:RHECIAT_CH0000584 phosphate ABC transporter, substrate-binding protein
YP_002974029.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000585 phosphate ABC transporter, permease protein
YP_002974030.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH00511 phosphate ABC transporter, permease protein
YP_002974031.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002974032.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rec:RHECIAT_CH0000588 phosphate uptake transcriptional regulator protein
YP_002974033.1	KEGG: rec:RHECIAT_CH0000589 phosphate regulon, two-component response regulator protein; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver
YP_002974034.1	PFAM: GcrA cell cycle regulator; KEGG: rec:RHECIAT_CH0000590 hypothetical protein
YP_002974035.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_002974036.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_002974037.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_002974038.1	KEGG: rec:RHECIAT_CH0000594 hypothetical protein
YP_002974039.1	protein associated with Co2+ and Mg2+ efflux
YP_002974040.1	catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis
YP_002974041.1	Catalyzes the deamination of dCTP to form dUTP
YP_002974042.1	PFAM: integrase family protein; KEGG: oan:Oant_2329 phage integrase family protein
YP_002974044.1	PFAM: AAA ATPase; peptidase M41; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003340 ATP-dependent hydrolase protein
YP_002974046.1	KEGG: bbt:BBta_3314 hypothetical protein
YP_002974048.1	KEGG: sme:SMc02155 hypothetical protein
YP_002974049.1	PFAM: protein of unknown function DUF1156; KEGG: sme:SMc02154 hypothetical protein
YP_002974050.1	KEGG: sme:SMc04429 hypothetical protein
YP_002974051.1	KEGG: sme:SMc02153 hypothetical protein
YP_002974052.1	PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: sme:SMc02152 helicase protein
YP_002974053.1	PFAM: protein of unknown function DUF87; KEGG: rsh:Rsph17029_3200 ATPase-like protein
YP_002974054.1	KEGG: rsh:Rsph17029_3199 hypothetical protein
YP_002974055.1	PFAM: protein of unknown function DUF995; KEGG: smd:Smed_3668 protein of unknown function DUF995
YP_002974056.1	KEGG: sme:SM_b20462 cellulase H precursor protein
YP_002974057.1	KEGG: sme:SM_b20460 cellulose synthase protein
YP_002974058.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: sme:SM_b20459 UDP-glucose 4-epimerase protein
YP_002974059.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: sme:SM_b20458 dTDP-glucose 4,6-dehydratase protein; SNP /replace=T
YP_002974060.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PE00361 AraC family transcriptional regulator
YP_002974061.1	KEGG: ret:RHE_CH00530 hypothetical protein
YP_002974062.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00531 hypothetical protein
YP_002974063.1	KEGG: ecl:EcolC_3640 transposase IS4 family protein
YP_002974064.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH00532 methyl-accepting chemotaxis protein
YP_002974065.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_CH0000603 probable amino acid ABC transporter, substrate-binding protein
YP_002974066.1	KEGG: ret:RHE_CH00534 hypothetical protein
YP_002974067.1	KEGG: rec:RHECIAT_CH0000605 hypothetical protein
YP_002974068.1	PFAM: peptidase S24 and S26 domain protein; KEGG: rec:RHECIAT_CH0000606 phage-related transcriptional regulator protein
YP_002974069.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rec:RHECIAT_CH0000607 probable two-component response regulator protein
YP_002974070.1	KEGG: rec:RHECIAT_CH0000608 hypothetical protein
YP_002974071.1	PFAM: protein of unknown function DUF952; KEGG: ret:RHE_CH00539 hypothetical protein
YP_002974072.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_002974073.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ret:RHE_CH00541 DNA-damage-inducible F protein (Na+ driven multidrug efflux pump)
YP_002974074.1	PFAM: SCP-like extracellular; KEGG: rec:RHECIAT_CH0000612 hypothetical protein
YP_002974075.1	KEGG: rec:RHECIAT_CH0000613 hypothetical protein
YP_002974076.1	PFAM: methyltransferase type 12; TPR repeat-containing protein; tetratricopeptide TPR_2 repeat protein; KEGG: rec:RHECIAT_CH0000614 probable methyltransferase protein
YP_002974077.1	PFAM: protein of unknown function DUF161; KEGG: ret:RHE_CH00545 hypothetical protein
YP_002974079.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_CH0000617 hypothetical protein
YP_002974080.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: rec:RHECIAT_CH0000618 transcriptional regulator protein
YP_002974081.1	PFAM: protein of unknown function DUF161; KEGG: rec:RHECIAT_CH0000619 hypothetical protein
YP_002974082.1	PFAM: DEAD/DEAH box helicase; DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: rec:RHECIAT_CH0000620 ATP-dependent RNA/DNA helicase protein
YP_002974083.1	PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0000621 phosphoesterase protein
YP_002974084.1	KEGG: ret:RHE_CH00551 hypothetical protein
YP_002974085.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_CH0000623 dihydrofolate reductase protein
YP_002974086.1	KEGG: rec:RHECIAT_CH0000624 hypothetical protein
YP_002974087.1	PFAM: protein of unknown function DUF81; KEGG: ret:RHE_CH00554 permease protein
YP_002974088.1	PFAM: peptidoglycan-binding domain 1 protein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: rec:RHECIAT_CH0000627 hemaglutinin protein
YP_002974089.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000628 lactoylglutathione lyase protein
YP_002974090.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr7900 nodulation protein
YP_002974091.1	PFAM: acyl-CoA dehydrogenase; KEGG: rec:RHECIAT_CH0000630 acyl-CoA dehydrogenase protein
YP_002974092.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002974093.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: bac:BamMC406_6039 cupin 2 domain-containing protein
YP_002974094.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase; KEGG: ret:RHE_CH00559 enoyl-CoA hydratase protein
YP_002974095.1	KEGG: mxa:MXAN_3660 hypothetical protein
YP_002974096.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0000633 cold shock protein
YP_002974097.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0000634 probable transcriptional regulator protein, MarR family
YP_002974098.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH00562 hypothetical protein
YP_002974099.1	KEGG: rec:RHECIAT_CH0000636 hypothetical protein
YP_002974100.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0000637 probable transporter, permease protein
YP_002974101.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0000638 probable transcriptional regulator protein, TetR family
YP_002974102.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: ret:RHE_CH00566 two-component sensor histidine kinase/response regulator hybrid protein
YP_002974103.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_002974104.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002974105.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH00569 UDP-glucose 4-epimerase protein
YP_002974106.1	KEGG: rec:RHECIAT_CH0000643 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002974107.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_002974108.1	PFAM: UvrD/REP helicase; KEGG: rec:RHECIAT_CH0000646 ATP-dependent DNA helicase protein
YP_002974109.1	KEGG: ret:RHE_CH00574 hypothetical protein
YP_002974110.1	PFAM: transport-associated; KEGG: rec:RHECIAT_CH0000648 hypothetical protein
YP_002974111.1	KEGG: rec:RHECIAT_CH0000649 hypothetical protein
YP_002974112.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH00575 hypothetical protein
YP_002974113.1	KEGG: rec:RHECIAT_CH0000651 hypothetical protein
YP_002974114.1	KEGG: rec:RHECIAT_CH0000653 hypothetical protein
YP_002974115.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002974116.1	KEGG: rec:RHECIAT_CH0000655 hypothetical protein
YP_002974117.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_002974118.1	PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH00582 hypothetical protein
YP_002974119.1	SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: rec:RHECIAT_CH0000658 arsenate reductase (phosphatase) protein
YP_002974120.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002974121.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_002974122.1	PFAM: protein of unknown function DUF329; KEGG: rec:RHECIAT_CH0000661 hypothetical protein
YP_002974123.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sme:SMc00089 hypothetical protein
YP_002974124.1	PFAM: transposase IS3/IS911 family protein; KEGG: gdj:Gdia_2654 transposase IS3 family protein
YP_002974125.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0000667 protein secretion protein, HlyD family
YP_002974126.1	KEGG: rec:RHECIAT_CH0000668 protein ABC transporter protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: AAA ATPase
YP_002974127.1	KEGG: rec:RHECIAT_CH0000669 hypothetical protein
YP_002974128.1	KEGG: rec:RHECIAT_CH0000670 hypothetical protein
YP_002974130.1	PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0000671 transcriptional regulator protein, LuxR family
YP_002974131.1	KEGG: hypothetical protein
YP_002974132.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: short chain dehydrogenase
YP_002974133.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3579 hypothetical protein
YP_002974134.1	KEGG: rsq:Rsph17025_3581 hypothetical protein
YP_002974135.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsq:Rsph17025_3582 hypothetical protein
YP_002974136.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter
YP_002974137.1	PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter
YP_002974138.1	PFAM: xylose isomerase; KEGG: xylose isomerase protein
YP_002974139.1	PFAM: ROK family protein; KEGG: transcription regulator protein
YP_002974140.1	PFAM: PfkB domain protein; KEGG: fructokinase ; K00847 fructokinase
YP_002974141.1	PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
YP_002974142.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ribitol 2-dehydrogenase
YP_002974143.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc02339 oxidoreductase protein
YP_002974144.1	PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: aldolase protein ; K01623 fructose-bisphosphate aldolase, class I
YP_002974145.1	PFAM: oxidoreductase domain protein; KEGG: thuBf; myo-inositol 2-dehydrogenase protein
YP_002974146.1	PFAM: protein of unknown function DUF1498; KEGG: hypothetical protein ; K09988 hypothetical protein
YP_002974147.1	PFAM: PfkB domain protein; KEGG: iolC; myo-inositol catabolism
YP_002974148.1	Converts D-sorbitol to L-sorbose
YP_002974149.1	PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: L-iditol 2-dehydrogenase protein
YP_002974150.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: transcriptional regulator protein ; K02529 LacI family transcriptional regulator
YP_002974151.1	KEGG: ots:OTBS_0057 hypothetical protein
YP_002974152.1	KEGG: ret:RHE_CH00615 polysaccharidase protein
YP_002974153.1	PFAM: acyltransferase; KEGG: cak:Caul_4545 acyltransferase
YP_002974154.1	PFAM: O-antigen polymerase; KEGG: rec:RHECIAT_CH0003464 exopolysaccharide production protein
YP_002974155.1	KEGG: si:ch211-139a5.3
YP_002974156.1	KEGG: rec:RHECIAT_CH0000691 DNA helicase protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein
YP_002974157.1	KEGG: rec:RHECIAT_CH0000693 DNA helicase protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein
YP_002974158.1	KEGG: rec:RHECIAT_CH0000694 hypothetical protein
YP_002974159.1	KEGG: ret:RHE_CH00619 hypothetical protein
YP_002974160.1	PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0000696 stress-induced protein
YP_002974161.1	KEGG: rec:RHECIAT_CH0000697 FAD-dependent oxidoreductase protein
YP_002974162.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0000698 transporter permease protein
YP_002974163.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; phospholipase/carboxylesterase; KEGG: rec:RHECIAT_CH0000699 glyoxalase/bleomycin resistance protein/dioxygenase protein
YP_002974164.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0000700 probable two-component sensor histidine kinase/response regulator hybrid protein
YP_002974165.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0000701 probable two-component response regulator protein
YP_002974166.1	KEGG: rec:RHECIAT_CH0000702 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAC repeat-containing protein
YP_002974167.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0000703 two-component response regulator protein
YP_002974168.1	PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: ret:RHE_CH00628 LuxR family transcriptional regulator
YP_002974169.1	KEGG: rec:RHECIAT_CH0000705 two-component response regulator protein
YP_002974170.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH00630 two-component sensor histidine kinase protein
YP_002974171.1	part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002974172.1	KEGG: rec:RHECIAT_CH0000708 hypothetical protein
YP_002974173.1	PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: ret:RHE_CH00633 potassium-efflux system protein
YP_002974174.1	KEGG: ret:RHE_CH00634 hypothetical protein
YP_002974175.1	KEGG: ret:RHE_CH00635 glycosyltransferase protein
YP_002974177.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0000713 methyl-accepting chemotaxis protein
YP_002974178.1	KEGG: rec:RHECIAT_CH0000714 chemotaxis protein CheX
YP_002974179.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0000715 chemotaxis two-component response regulator protein
YP_002974180.1	KEGG: rec:RHECIAT_CH0000716 chemotaxis two-component sensor histidine kinase protein; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein
YP_002974181.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: rec:RHECIAT_CH0000717 chemotaxis signal transduction protein
YP_002974182.1	KEGG: rec:RHECIAT_CH0000718 methyl-accepting chemotaxis protein O-methyltransferase protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type
YP_002974183.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_002974184.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0000720 chemotaxis two-component response regulator protein
YP_002974185.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_002974186.1	KEGG: ret:RHE_CH00645 hypothetical protein
YP_002974187.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002974188.1	PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0000724 probable transcriptional regulator protein, LuxR family
YP_002974189.1	PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0000725 probable transcriptional regulator protein, LuxR family
YP_002974190.1	KEGG: rec:RHECIAT_CH0000726 hypothetical protein
YP_002974191.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_002974192.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002974193.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rec:RHECIAT_CH0000729 flagellar motor switch protein
YP_002974194.1	PFAM: surface presentation of antigens (SPOA) protein; KEGG: rec:RHECIAT_CH0000730 flagellar C-ring motor switch protein
YP_002974195.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002974196.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_002974197.1	involved in type III protein export during flagellum assembly
YP_002974198.1	KEGG: ret:RHE_CH00657 hypothetical protein
YP_002974199.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella
YP_002974200.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_002974201.1	forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_002974202.1	makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella
YP_002974203.1	required for the assembly of the flagellar basal body P-ring; Bradyrhizobium japonicum has two types of flagella, a single thick flagella and a few thin flagella; the protein in this cluster is associated with the thin flagella
YP_002974204.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_002974205.1	KEGG: rec:RHECIAT_CH0000741 exported flagella related protein
YP_002974206.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_002974207.1	PFAM: flagellar basal body-associated protein FliL; KEGG: ret:RHE_CH00666 flagellar biosynthesis transmembrane protein
YP_002974208.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002974209.1	KEGG: rec:RHECIAT_CH0000745 hypothetical protein
YP_002974210.1	PFAM: flagellin domain protein; KEGG: ret:RHE_CH00669 flagellin C protein
YP_002974211.1	PFAM: flagellin domain protein; KEGG: rec:RHECIAT_CH0000748 flagellin C protein
YP_002974212.1	PFAM: flagellin domain protein; KEGG: ret:RHE_CH00671 flagellin C protein
YP_002974213.1	PFAM: flagellin domain protein; KEGG: rec:RHECIAT_CH0000750 flagellin C protein
YP_002974214.1	KEGG: rec:RHECIAT_CH0000751 hypothetical protein
YP_002974215.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002974216.1	a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation
YP_002974217.1	KEGG: rec:RHECIAT_CH0000754 chemotaxis motility protein
YP_002974218.1	PFAM: Lytic transglycosylase catalytic; KEGG: ret:RHE_CH00677 hypothetical protein
YP_002974219.1	PFAM: transcriptional regulator domain protein; KEGG: ret:RHE_CH00678 two-component response regulator protein
YP_002974220.1	the hook connects flagellar basal body to the flagellar filament
YP_002974221.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002974222.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella
YP_002974223.1	acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_002974224.1	post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_002974225.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_002974226.1	FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum
YP_002974227.1	membrane protein involved in the flagellar export apparatus
YP_002974228.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_002974229.1	KEGG: rec:RHECIAT_CH0000766 hypothetical protein
YP_002974230.1	KEGG: rec:RHECIAT_CH0000767 hypothetical protein
YP_002974231.1	KEGG: ret:RHE_CH00690 hypothetical protein
YP_002974232.1	KEGG: ret:RHE_CH00691 hypothetical protein
YP_002974233.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: rec:RHECIAT_CH0000770 N-acetyl mannosamine transferase protein
YP_002974234.1	KEGG: rec:RHECIAT_CH0000771 succinoglycan biosynthesis transport protein
YP_002974235.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002974236.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_CH0000773 transcriptional regulator protein, LacI family
YP_002974237.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH00696 alpha-glucoside ABC transporter, substrate-binding protein
YP_002974238.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH00697 alpha-glucoside ABC transporter, permease protein
YP_002974239.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000777 alpha-glucoside ABC transporter, permease protein
YP_002974240.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ret:RHE_CH00699 alpha-glucosidase protein
YP_002974241.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000779 alpha-glucoside ABC transporter, ATP-binding protein
YP_002974242.1	KEGG: rec:RHECIAT_CH0000780 hypothetical protein
YP_002974243.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_002974244.1	TIGRFAM: 6-phosphogluconolactonase; KEGG: rec:RHECIAT_CH0000784 6-phosphogluconolactonase protein; SNP /replace=G
YP_002974245.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_002974246.1	PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_CH00705 oxidoreductase protein
YP_002974247.1	PFAM: glutamine synthetase catalytic region; KEGG: ret:RHE_CH00706 glutamine synthetase protein
YP_002974248.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rec:RHECIAT_CH0000788 hypothetical protein
YP_002974249.1	KEGG: hypothetical protein
YP_002974250.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0000790 methyl-accepting chemotaxis protein
YP_002974251.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH00709 methyl-accepting chemotaxis protein
YP_002974252.1	KEGG: rec:RHECIAT_CH0000792 hypothetical protein
YP_002974253.1	PFAM: regulatory protein LysR; KEGG: rec:RHECIAT_CH0000793 probable transcriptional regulator protein, LysR family
YP_002974254.1	KEGG: rec:RHECIAT_CH0000794 hypothetical protein
YP_002974255.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: ret:RHE_CH00712 isocitrate lyase protein
YP_002974256.1	PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0000796 probable transcriptional regulator protein
YP_002974257.1	PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc00770 putrescine-binding periplasmic protein
YP_002974258.1	KEGG: rec:RHECIAT_CH0000798 spermidine/putrescine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase
YP_002974259.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH00716 spermidine/putrescine ABC transporter, permease component I protein
YP_002974260.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000800 spermidine/putrescine ABC transporter, permease component II protein
YP_002974261.1	PFAM: AsmA family protein; KEGG: ret:RHE_CH00718 hypothetical protein
YP_002974262.1	AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase
YP_002974263.1	KEGG: rec:RHECIAT_CH0000804 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_002974264.1	TIGRFAM: phasin; KEGG: ret:RHE_CH00721 hypothetical protein
YP_002974265.1	KEGG: ret:RHE_CH00727 hypothetical protein
YP_002974266.1	KEGG: ret:RHE_CH00728 hypothetical protein
YP_002974267.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH00729 LysR family transcriptional regulator
YP_002974268.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rec:RHECIAT_CH0000812 antibiotic biosynthesis monooxygenase protein
YP_002974269.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde Dehydrogenase; KEGG: rec:RHECIAT_CH0000813 methylmalonate-semialdehyde dehydrogenase (acylating) protein
YP_002974270.1	rhizobial iron regulator; in Sinorhizobium meliloti mutations in this gene affect the expression of a number of iron-responsive operons
YP_002974271.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0000815 dipeptide ABC transporter, substrate-binding protein
YP_002974272.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000816 dipeptide ABC transporter, permease protein
YP_002974273.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000817 dipeptide ABC transporter, permease protein
YP_002974274.1	KEGG: ret:RHE_CH00739 dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase
YP_002974275.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_002974276.1	KEGG: rec:RHECIAT_CH0000820 gluconokinase protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase
YP_002974277.1	PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0000821 D-amino acid dehydrogenase protein; SNP /replace=C
YP_002974278.1	PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: ret:RHE_CH00743 hypothetical protein
YP_002974279.1	PFAM: chalcone and stilbene synthase domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rec:RHECIAT_CH0000823 probable chalcone synthase protein
YP_002974280.1	SMART: tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0000824 hypothetical protein
YP_002974281.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rec:RHECIAT_CH0000825 RNA polymerase sigma factor protein (sigma-24)
YP_002974282.1	KEGG: rec:RHECIAT_CH0000826 hypothetical protein
YP_002974283.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: atc:AGR_L_532 glucose-1-phosphate thymidylyltransferase
YP_002974284.1	KEGG: atc:AGR_L_531 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase
YP_002974285.1	KEGG: atc:AGR_L_529 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_002974286.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH00763 GDP-L-fucose synthase protein
YP_002974287.1	TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH00762 GDP-mannose 4,6-dehydratase protein
YP_002974288.1	PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: rpe:RPE_4236 N-acetylneuraminate synthase
YP_002974289.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rce:RC1_3770 oxidoreductase, short chain dehydrogenase
YP_002974290.1	PFAM: aldehyde Dehydrogenase; KEGG: rce:RC1_3767 aldehyde dehydrogenase, putative
YP_002974291.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: rce:RC1_3768 acylneuraminate cytidylyltransferase, putative
YP_002974292.1	PFAM: transketolase central region; transketolase domain protein; KEGG: rce:RC1_3769 transketolase, putative
YP_002974293.1	PFAM: Capsule polysaccharide biosynthesis protein; KEGG: rpe:RPE_4251 hypothetical protein
YP_002974294.1	KEGG: rsq:Rsph17025_4339 hypothetical protein
YP_002974295.1	KEGG: dde:Dde_0428 glycosyltransferase-like protein
YP_002974296.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dvm:DvMF_1854 NAD-dependent epimerase/dehydratase
YP_002974297.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH00756 alpha-glycosyltransferase protein
YP_002974298.1	PFAM: ABC transporter; KEGG: sfu:Sfum_3355 ABC transporter
YP_002974299.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rpe:RPE_4248 ABC transporter
YP_002974300.1	PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4247 glycosyl transferase, family 2
YP_002974301.1	TIGRFAM: methyltransferase FkbM family; KEGG: rpe:RPE_3384 methyltransferase FkbM family
YP_002974302.1	PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2
YP_002974303.1	PFAM: Capsule polysaccharide biosynthesis protein; KEGG: rpe:RPE_4251 hypothetical protein
YP_002974304.1	PFAM: glycosyl transferase group 1; KEGG: bov:BOV_0533 mannosyltransferase
YP_002974305.1	KEGG: neu:NE0499 glycosyl transferase family protein
YP_002974306.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily subfamily IIA hydrolase like protein; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH00830 hydrolase, haloacid dehalogenase-like family protein
YP_002974307.1	KEGG: ret:RHE_CH00831 bifunctional riboflavin kinase/FMN adenylyltransferase
YP_002974308.1	KEGG: smd:Smed_6262 hypothetical protein
YP_002974309.1	KEGG: smd:Smed_6261 NoeA host specific nodulation protein
YP_002974310.1	PFAM: sulfatase
YP_002974311.1	PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4528 transposase IS3/IS911 family protein
YP_002974312.1	TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: rec:RHECIAT_PC0000882 conjugal transfer protein A
YP_002974313.1	PFAM: DNA polymerase III subunit beta; SMART: HEPN domain protein; KEGG: sme:SMa0967 hypothetical protein
YP_002974317.1	PFAM: Ppx/GppA phosphatase; KEGG: ret:RHE_CH00788 exopolyphosphatase protein
YP_002974318.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rec:RHECIAT_CH0000875 ribosomal RNA methyltransferase/cell division protein
YP_002974319.1	KEGG: ret:RHE_CH00791 lactoylglutathione lyase protein
YP_002974320.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH00792 efflux transporter, permease protein
YP_002974321.1	PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0000878 beta-lactamase family protein
YP_002974322.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_002974323.1	KEGG: ret:RHE_CH00795 hypothetical protein
YP_002974324.1	PFAM: protein of unknown function DUF1123; KEGG: rec:RHECIAT_CH0000883 hypothetical protein
YP_002974325.1	TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bpa:BPP0822 autotransporter
YP_002974326.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0000884 probable transcriptional regulator protein, TetR family
YP_002974327.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH00800 LysR family transcriptional regulator
YP_002974328.1	PFAM: protein of unknown function DUF1127; KEGG: ret:RHE_CH00801 hypothetical protein
YP_002974329.1	KEGG: rec:RHECIAT_CH0000887 hypothetical protein
YP_002974330.1	KEGG: ret:RHE_CH00803 glutamate-cysteine ligase protein; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GCS2
YP_002974331.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002974332.1	PFAM: phosphate transporter; KEGG: ret:RHE_CH00805 phosphate ABC transporter permease
YP_002974333.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0000891 NTP pyrophosphohydrolase protein, MuT/NUDIX family
YP_002974334.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator protein
YP_002974335.1	PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; KEGG: ahcY; adenosylhomocysteinase protein ; K01251 adenosylhomocysteinase
YP_002974336.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: met:M446_1258 alcohol dehydrogenase
YP_002974337.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mms:mma_1919 LysR family transcriptional regulator
YP_002974338.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH00807 LysR family transcriptional regulator
YP_002974339.1	PFAM: FAD linked oxidase domain protein; KEGG: ret:RHE_CH00808 glycolate oxidase subunit D protein
YP_002974340.1	PFAM: FAD linked oxidase domain protein; KEGG: rec:RHECIAT_CH0000894 glycolate oxidase protein, subunit E
YP_002974341.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ret:RHE_CH00810 glycolate oxidase subunit F protein
YP_002974342.1	KEGG: rec:RHECIAT_CH0000896 hypothetical protein
YP_002974343.1	KEGG: rec:RHECIAT_CH0000897 lipid A oxidase (involved in formation of 2-aminogluconate) protein
YP_002974344.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH00813 hypothetical protein
YP_002974345.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH00814 hypothetical protein
YP_002974346.1	PFAM: methyladenine glycosylase; KEGG: rec:RHECIAT_CH0000900 DNA-3-methyladenine glycosylase I protein
YP_002974347.1	KEGG: rec:RHECIAT_CH0000901 hypothetical protein
YP_002974348.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0000902 hydrolase protein, HAD superfamily
YP_002974349.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00818 oxidoreductase protein
YP_002974350.1	PFAM: protein of unknown function DUF305; KEGG: rec:RHECIAT_CH0000904 hypothetical protein
YP_002974351.1	KEGG: rec:RHECIAT_CH0000905 hypothetical protein
YP_002974352.1	KEGG: rec:RHECIAT_CH0000906 hypothetical protein
YP_002974353.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002974354.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_002974355.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_002974356.1	PFAM: DoxX family protein; KEGG: ret:RHE_CH00824 hypothetical protein
YP_002974357.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH00825 glutathione S-transferase protein
YP_002974358.1	KEGG: rec:RHECIAT_CH0000912 hypothetical protein
YP_002974359.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_002974360.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002974361.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily subfamily IIA hydrolase like protein; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH00830 hydrolase, haloacid dehalogenase-like family protein
YP_002974362.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_002974363.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme
YP_002974364.1	KEGG: rec:RHECIAT_CH0000921 hypothetical protein
YP_002974365.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rec:RHECIAT_CH0000922 cytosine deaminase protein
YP_002974366.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: rec:RHECIAT_CH0000923 probable RNA-pseudouridine synthase protein, ribosomal large subunit B
YP_002974367.1	TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase putative; KEGG: rec:RHECIAT_CH0000924 methylase protein
YP_002974368.1	PFAM: Patatin; KEGG: rec:RHECIAT_CH0000925 hydrolase protein
YP_002974369.1	KEGG: hypothetical protein
YP_002974370.1	PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: cysJ; sulfite reductase
YP_002974371.1	KEGG: hypothetical protein
YP_002974372.1	TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: rec:RHECIAT_CH0000928 glutathione-regulated potassium-efflux transporter protein
YP_002974373.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rec:RHECIAT_CH0000929 modulator of DNA gyrase protein
YP_002974374.1	PFAM: inositol monophosphatase; KEGG: ret:RHE_CH00842 inositol monophosphatase protein
YP_002974375.1	KEGG: ret:RHE_CH00843 hypothetical protein
YP_002974376.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_002974377.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH00845 phosphoglycolate phosphatase protein
YP_002974378.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_002974379.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sil:SPO2668 LysR family transcriptional regulator
YP_002974380.1	PFAM: aminotransferase class IV; KEGG: dsh:Dshi_3150 aminotransferase class IV
YP_002974381.1	KEGG: rec:RHECIAT_CH0000936 hypothetical protein
YP_002974382.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_002974383.1	KEGG: rec:RHECIAT_CH0000938 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; SMART: response regulator receiver; PAS domain containing protein
YP_002974384.1	KEGG: ret:RHE_CH00850 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002974385.1	PFAM: PRC-barrel domain protein; KEGG: rec:RHECIAT_CH0000940 hypothetical protein
YP_002974386.1	PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: rec:RHECIAT_CH0000941 probable gluconolactonase protein
YP_002974387.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_002974388.1	PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ret:RHE_CH00854 2-dehydro-3-deoxygalactonokinase protein
YP_002974389.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH00855 3-oxoacyl-(acyl carrier protein) reductase protein
YP_002974390.1	PFAM: transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: ret:RHE_CH00856 IclR family transcriptional regulator
YP_002974391.1	PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0000947 transcriptional regulator protein, LuxR family
YP_002974392.1	PFAM: protein of unknown function DUF59; KEGG: ret:RHE_CH00859 ATP-binding protein (Mrp protein-like)
YP_002974393.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: ret:RHE_CH00860 magnesium/cobalt transporter protein
YP_002974394.1	PFAM: K potassium transporter; KEGG: rec:RHECIAT_CH0000951 potassium transporter protein
YP_002974395.1	PFAM: cell wall hydrolase SleB; KEGG: rec:RHECIAT_CH0000952 cell wall hydrolase protein involved in spore germination
YP_002974396.1	KEGG: rec:RHECIAT_CH0000953 ATP synthase protein, subunit I
YP_002974397.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_002974398.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_002974399.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.
YP_002974400.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_002974402.1	PFAM: transposase IS4 family protein; KEGG: ecl:EcolC_3640 transposase IS4 family protein
YP_002974403.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002974404.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ret:RHE_CH00869 hypothetical protein
YP_002974405.1	KEGG: rec:RHECIAT_CH0000960 glycosyltransferase protein
YP_002974406.1	KEGG: ret:RHE_CH00871 hypothetical protein
YP_002974407.1	TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: ret:RHE_CH00872 molybdenum cofactor biosynthesis protein
YP_002974408.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_002974409.1	PFAM: TPR repeat-containing protein; tetratricopeptide TPR_2 repeat protein; SMART: tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0000964 hypothetical protein
YP_002974410.1	PFAM: Polyprenyl synthetase; KEGG: ret:RHE_CH00875 octaprenyl-diphosphate synthase protein
YP_002974411.1	KEGG: rec:RHECIAT_CH0000966 hypothetical protein
YP_002974412.1	PFAM: methyltransferase small; KEGG: rec:RHECIAT_CH0000967 methyltransferase protein
YP_002974413.1	TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: ret:RHE_CH00878 manganese transport protein MntH
YP_002974414.1	PFAM: peptidase S49; KEGG: ret:RHE_CH00879 protease protein
YP_002974415.1	KEGG: rec:RHECIAT_CH0000970 hypothetical protein
YP_002974416.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002974417.1	KEGG: rec:RHECIAT_CH0000973 hypothetical protein
YP_002974418.1	PFAM: LemA family protein; KEGG: rec:RHECIAT_CH0000974 hypothetical protein
YP_002974419.1	KEGG: rec:RHECIAT_CH0000975 3-phosphoshikimate 1-carboxyvinyltransferase protein; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YP_002974420.1	KEGG: ret:RHE_CH00885 hypothetical protein
YP_002974421.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002974422.1	KEGG: rec:RHECIAT_CH0000978 hypothetical protein
YP_002974423.1	PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH00888 methyl-accepting chemotaxis protein
YP_002974424.1	PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH00888 methyl-accepting chemotaxis protein
YP_002974425.1	PFAM: protein of unknown function DUF523; KEGG: rec:RHECIAT_CH0000979 hypothetical protein
YP_002974426.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002974427.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: rec:RHECIAT_CH0000981 probable transcriptional accessory protein (RNA binding S1 domain)
YP_002974428.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: ret:RHE_CH00892 cyclopropane-fatty-acyl-phospholipid synthase protein
YP_002974429.1	PFAM: phosphoglycerate mutase; KEGG: ret:RHE_CH00893 phosphoglycerate mutase protein
YP_002974430.1	PFAM: MltA-interacting MipA family protein; KEGG: rec:RHECIAT_CH0000984 outer membrane scaffold protein, MipA family
YP_002974431.1	UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_002974432.1	PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: threonine dehydratase protein ; K01754 threonine dehydratase
YP_002974433.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: transcriptional regulator protein
YP_002974434.1	KEGG: rec:RHECIAT_CH0000987 hypothetical protein
YP_002974435.1	PFAM: protein of unknown function DUF1217; KEGG: ret:RHE_CH00897 hypothetical protein
YP_002974436.1	PFAM: FAD linked oxidase domain protein; KEGG: ret:RHE_CH00898 FAD-dependent oxidoreductase protein
YP_002974437.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; KEGG: rec:RHECIAT_CH0000990 probable translation factor protein
YP_002974438.1	KEGG: rec:RHECIAT_CH0000991 hypothetical protein
YP_002974439.1	KEGG: rec:RHECIAT_CH0000992 hypothetical protein
YP_002974440.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_CH00901 dioxygenase protein
YP_002974441.1	PFAM: BA14K family protein; KEGG: ret:RHE_CH00902 hypothetical protein
YP_002974442.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: rec:RHECIAT_CH0000996 probable magnesium and cobalt transporter protein
YP_002974443.1	PFAM: acyl-CoA dehydrogenase; acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_CH00905 acyl-CoA dehydrogenase protein
YP_002974444.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002974445.1	KEGG: rec:RHECIAT_CH0000999 hypothetical protein
YP_002974446.1	PFAM: (Uracil-5)-methyltransferase; KEGG: rec:RHECIAT_CH0001002 23S rRNA (uracil-5-)-methyltransferase protein
YP_002974447.1	KEGG: rec:RHECIAT_CH0001003 hemolysin protein; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein
YP_002974448.1	KEGG: mlo:mll1459 hypothetical protein
YP_002974449.1	PFAM: chemotaxis sensory transducer; CHASE3 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH00912 methyl-accepting chemotaxis protein
YP_002974450.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_002974451.1	PFAM: Pirin domain protein; KEGG: ret:RHE_CH00914 hypothetical protein
YP_002974452.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001008 short-chain dehydrogenase protein
YP_002974453.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_002974454.1	PFAM: histone deacetylase superfamily; KEGG: rec:RHECIAT_CH0001010 probable deacetylase protein
YP_002974455.1	KEGG: rec:RHECIAT_CH0001011 thioesterase protein
YP_002974456.1	KEGG: rec:RHECIAT_CH0001021 hypothetical protein
YP_002974457.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_CH00919 AsnC/GntR family transcriptional regulator
YP_002974458.1	PFAM: Malonyl-CoA decarboxylase; KEGG: ret:RHE_CH00920 malonyl-CoA decarboxylase protein
YP_002974459.1	catalyzes the formation of malonyl-CoA from malonate and CoA
YP_002974460.1	PFAM: Dicarboxylate carrier MatC domain protein; citrate transporter; KEGG: ret:RHE_CH00922 dicarboxylate-carrier protein
YP_002974461.1	PFAM: tRNA synthetase class I (M); KEGG: metS; methionyl-tRNA synthetase protein ; K01874 methionyl-tRNA synthetase
YP_002974462.1	KEGG: psp:PSPPH_1479 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_002974463.1	PFAM: alpha/beta hydrolase fold; KEGG: mes:Meso_4078 alpha/beta hydrolase fold
YP_002974464.1	KEGG: ret:RHE_PF00083 hypothetical protein
YP_002974465.1	PFAM: BioY protein; KEGG: ret:RHE_CH00928 biotin transporter protein
YP_002974466.1	PFAM: cobalt transport protein; KEGG: rec:RHECIAT_CH0001026 probable cobalt/biotin ABC transporter, permease protein
YP_002974467.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001027 probable cobalt/biotin ABC transporter, ATP-binding protein
YP_002974468.1	PFAM: protein of unknown function DUF1006; KEGG: rec:RHECIAT_CH0001029 hypothetical protein
YP_002974469.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: rec:RHECIAT_CH0001030 GTP cyclohydrolase II protein (riboflavin biosynthesis)
YP_002974470.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002974471.1	KEGG: GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002974472.1	PFAM: protein of unknown function DUF1344; KEGG: rec:RHECIAT_CH0001032 hypothetical protein
YP_002974473.1	PFAM: phosphoglycerate mutase; KEGG: ret:RHE_CH00937 phosphoglycerate mutase protein
YP_002974474.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_002974475.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_CH0001036 molecular chaperone protein DnaJ
YP_002974476.1	KEGG: ret:RHE_CH00940 hypothetical protein
YP_002974477.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_002974478.1	PFAM: polysaccharide deacetylase; KEGG: rec:RHECIAT_CH0001039 polysaccharide deacetylase protein
YP_002974479.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; beta-lactamase; Sporulation domain protein; KEGG: rec:RHECIAT_CH0001040 D-alanyl-D-alanine carboxypeptidase protein
YP_002974480.1	KEGG: rec:RHECIAT_CH0001041 hypothetical protein
YP_002974482.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH00949 acetyltransferase protein
YP_002974483.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ret:RHE_CH00950 Zn-dependent protease protein
YP_002974484.1	PFAM: Invasion associated locus B family protein; KEGG: ret:RHE_CH00951 hypothetical protein
YP_002974485.1	KEGG: ret:RHE_CH00952 cytochrome-c oxidase, subunit II protein; TIGRFAM: cytochrome C oxidase, subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region
YP_002974486.1	KEGG: ret:RHE_CH00953 cytochrome-c oxidase, subunit I protein; TIGRFAM: cytochrome C oxidase, subunit I; PFAM: cytochrome C oxidase subunit I
YP_002974487.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_002974488.1	KEGG: rec:RHECIAT_CH0001050 hypothetical protein
YP_002974489.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_002974490.1	PFAM: cytochrome C oxidase subunit III; KEGG: rec:RHECIAT_CH0001052 cytochrome C oxidase protein, subunit III
YP_002974491.1	PFAM: Chloramphenicol phosphotransferase family protein; KEGG: rec:RHECIAT_CH0001053 probable chloramphenicol phosphotransferase protein
YP_002974492.1	PFAM: protein of unknown function DUF983; KEGG: rec:RHECIAT_CH0001054 hypothetical conserved membrane protein
YP_002974493.1	PFAM: Surfeit locus 1 family protein; KEGG: rec:RHECIAT_CH0001055 transmembrane cytochrome oxidase complex biogenesis protein
YP_002974494.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_002974495.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_002974496.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002974497.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bid:Bind_1771 LysR family transcriptional regulator
YP_002974498.1	PFAM: carboxymuconolactone decarboxylase; Cupin 2 conserved barrel domain protein; KEGG: smd:Smed_4453 carboxymuconolactone decarboxylase
YP_002974499.1	KEGG: pde:Pden_3241 twin-arginine translocation pathway signal
YP_002974500.1	KEGG: ret:RHE_CH00964 hypothetical protein
YP_002974501.1	PFAM: CsbD family protein; KEGG: rec:RHECIAT_CH0001060 hypothetical protein
YP_002974502.1	PFAM: protein of unknown function DUF179; KEGG: rec:RHECIAT_CH0001061 transcriptional regulator protein
YP_002974503.1	KEGG: ret:RHE_CH00967 hypothetical protein
YP_002974504.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rec:RHECIAT_CH0001063 thioredoxin protein
YP_002974505.1	KEGG: hypothetical protein
YP_002974506.1	KEGG: nar:Saro_3538 hypothetical protein
YP_002974507.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_A2677 short-chain dehydrogenase/oxidoreductase
YP_002974508.1	PFAM: regulatory protein TetR; KEGG: bxe:Bxe_A2672 TetR family transcriptional regulator
YP_002974509.1	TIGRFAM: uncharacterized peroxidase-related enzyme; PFAM: carboxymuconolactone decarboxylase; KEGG: hypothetical protein
YP_002974510.1	KEGG: hypothetical protein
YP_002974511.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator protein
YP_002974512.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: oxidoreductase protein
YP_002974513.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: amino acid ABC transporter
YP_002974514.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: amino acid ABC transporter
YP_002974515.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amino acid ABC transporter
YP_002974516.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amino acid ABC transporter
YP_002974517.1	SNP /replace=T
YP_002974519.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001066 probable zinc ABC transporter, ATP-binding protein
YP_002974520.1	PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0001067 probable zinc ABC transporter, permease protein
YP_002974521.1	PFAM: periplasmic solute binding protein; KEGG: ret:RHE_CH00971 zinc ABC transporter substrate-binding protein
YP_002974522.1	KEGG: transporter
YP_002974523.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: rec:RHECIAT_CH0001069 hypothetical protein
YP_002974524.1	KEGG: ret:RHE_CH00975 hypothetical protein
YP_002974525.1	PFAM: endoribonuclease L-PSP; KEGG: sme:SMc01714 hypothetical protein
YP_002974526.1	PFAM: regulatory protein TetR; tetracyclin repressor domain protein; KEGG: sme:SMc01715 hypothetical protein
YP_002974527.1	KEGG: ret:RHE_CH01058 hypothetical protein
YP_002974528.1	PFAM: protein of unknown function DUF938; KEGG: reu:Reut_B5107 hypothetical protein
YP_002974529.1	PFAM: oxidoreductase molybdopterin binding; KEGG: smd:Smed_6027 oxidoreductase molybdopterin binding
YP_002974530.1	PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: ret:RHE_CH01063 SAM-dependent methyltransferase protein; SNP /replace=T
YP_002974531.1	KEGG: sme:SMa1929 hypothetical protein
YP_002974532.1	KEGG: ret:RHE_CH00976 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; Diverse 7TM receptor transmembrane region; GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein
YP_002974533.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001072 ribosomal-protein-alanine N-acetyltransferase protein
YP_002974534.1	PFAM: peptidase M16 domain protein; KEGG: rec:RHECIAT_CH0001073 probable processing peptidase protein
YP_002974535.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_002974536.1	KEGG: ret:RHE_CH00980 hypothetical protein
YP_002974537.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0001077 probable hydrolase phosphatase protein
YP_002974538.1	KEGG: hypothetical protein
YP_002974539.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mcpCf; methyl accepting chemotaxis protein
YP_002974543.1	SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0001081 transcriptional regulator protein
YP_002974544.1	PFAM: NIPSNAP family containing protein; KEGG: ret:RHE_CH00993 hypothetical protein
YP_002974545.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rec:RHECIAT_CH0001083 antibiotic biosynthesis monooxygenase protein
YP_002974546.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: ret:RHE_CH00995 site-specific DNA-methyltransferase (adenine-specific) protein
YP_002974547.1	KEGG: rec:RHECIAT_CH0001085 hypothetical protein
YP_002974548.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0001086 probable 2-haloacid dehalogenase protein
YP_002974549.1	KEGG: ret:RHE_CH00997 A/G-specific adenine glycosylase protein; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein
YP_002974550.1	PFAM: protein of unknown function DUF721; KEGG: rec:RHECIAT_CH0001088 hypothetical protein
YP_002974551.1	PFAM: RbsD or FucU transport; KEGG: bxe:Bxe_C1273 sugar binding or transport, RbsD/FucU
YP_002974552.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: acr:Acry_0501 periplasmic binding protein/LacI transcriptional regulator
YP_002974553.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mlo:mll1016 ATP-binding protein of sugar ABC transporter
YP_002974554.1	PFAM: inner-membrane translocator; KEGG: mlo:mll1013 permease protein of sugar ABC transporter
YP_002974555.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll1012 periplasmic ribose-binding protein
YP_002974556.1	KEGG: rec:RHECIAT_CH0001090 hypothetical protein
YP_002974557.1	KEGG: rec:RHECIAT_CH0001093 thiol-disulfide oxidoreductase protein
YP_002974558.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: rec:RHECIAT_CH0001094 chromosome partition protein
YP_002974559.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002974560.1	KEGG: ret:RHE_CH01004 hypothetical protein
YP_002974561.1	KEGG: rec:RHECIAT_CH0001103 hypothetical protein
YP_002974562.1	KEGG: ret:RHE_CH01005 hypothetical protein
YP_002974563.1	KEGG: ret:RHE_CH01006 hypothetical protein
YP_002974564.1	KEGG: ret:RHE_CH01007 hypothetical protein
YP_002974565.1	PFAM: saccharopine dehydrogenase; KEGG: ret:RHE_CH01011 hypothetical protein
YP_002974566.1	PFAM: thiol-disulphide oxidoreductase DCC; KEGG: ret:RHE_CH01012 hypothetical protein
YP_002974567.1	PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0001110 probable beta-lactamase family protein
YP_002974568.1	PFAM: transposase IS3/IS911 family protein; KEGG: sme:SMa2191 transposase, fragment
YP_002974569.1	PFAM: IS66 Orf2 family protein; KEGG: oan:Oant_4787 IS66 Orf2 family protein
YP_002974570.1	PFAM: transposase IS66; KEGG: sme:SMa2171 transposase
YP_002974571.1	KEGG: sme:SMa1608 hypothetical protein
YP_002974572.1	KEGG: rpb:RPB_3532 hypothetical protein
YP_002974573.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_CH0001115 probable oxidoreducatse protein
YP_002974574.1	KEGG: rec:RHECIAT_CH0001118 probable transcriptional regulator protein, TetR family
YP_002974575.1	PFAM: PspA/IM30 family protein; KEGG: ret:RHE_CH01020 negative regulator protein PspA (suppresses sigma54-dependent transcription)
YP_002974576.1	PFAM: YiaAB two helix domain protein; KEGG: rec:RHECIAT_CH0001120 hypothetical protein
YP_002974577.1	Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein
YP_002974578.1	KEGG: ret:RHE_CH01025 hypothetical protein
YP_002974579.1	KEGG: hypothetical protein
YP_002974581.1	KEGG: rec:RHECIAT_PC0000054 hypothetical protein
YP_002974582.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002974584.1	SMART: regulatory protein LuxR; KEGG: transcriptional regulator, LuxR family
YP_002974586.1	KEGG: rec:RHECIAT_CH0001129 hypothetical protein
YP_002974587.1	KEGG: ret:RHE_CH01031 hypothetical protein
YP_002974589.1	KEGG: rec:RHECIAT_CH0001131 hypothetical protein
YP_002974591.1	KEGG: ret:RHE_CH01033 hypothetical protein; SNP /replace=T
YP_002974593.1	KEGG: rec:RHECIAT_CH0001134 hypothetical protein
YP_002974594.1	KEGG: rec:RHECIAT_CH0001135 hypothetical protein
YP_002974595.1	KEGG: ret:RHE_CH01035 hypothetical protein
YP_002974596.1	KEGG: ret:RHE_CH01036 hypothetical protein
YP_002974597.1	KEGG: smd:Smed_4846 hypothetical protein
YP_002974598.1	PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ret:RHE_CH01037 LuxR family transcriptional regulator
YP_002974599.1	KEGG: ret:RHE_CH01038 hypothetical protein
YP_002974600.1	PFAM: NIPSNAP family containing protein; KEGG: mlo:mll2321 hypothetical protein
YP_002974601.1	PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_PE00141 trifolitoxin immunity protein
YP_002974602.1	PFAM: carboxylesterase type B; KEGG: rpe:RPE_1072 carboxylesterase, type B
YP_002974603.1	KEGG: smd:Smed_4456 hypothetical protein
YP_002974604.1	PFAM: glycosyl transferase family 25; KEGG: ret:RHE_CH01041 glycosyltransferase protein
YP_002974605.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH01042 two-component sensor histidine kinase protein
YP_002974606.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ret:RHE_CH01043 two-component response regulator protein
YP_002974607.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_CH01071 hypothetical protein
YP_002974608.1	KEGG: bxe:Bxe_B2414 cytochrome C
YP_002974609.1	PFAM: class II aldolase/adducin family protein; KEGG: adolase/adducin
YP_002974610.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rpb:RPB_2945 response regulator receiver domain-containing protein
YP_002974611.1	PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sensory transduction regulatory protein
YP_002974612.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mno:Mnod_5546 CDP-alcohol phosphatidyltransferase
YP_002974613.1	KEGG: psb:Psyr_1616 Rieske [2Fe-2S] region
YP_002974614.1	KEGG: csa:Csal_0745 cupin 2 protein
YP_002974616.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: pst:PSPTO_0835 riboflavin biosynthesis protein RibD domain-containing protein
YP_002974617.1	KEGG: atc:AGR_pAT_413 hypothetical protein
YP_002974618.1	KEGG: atc:AGR_pAT_414 hypothetical protein
YP_002974619.1	PFAM: endoribonuclease L-PSP; KEGG: atc:AGR_C_2721 hypothetical protein
YP_002974620.1	PFAM: regulatory protein TetR; KEGG: transcriptional regulator protein
YP_002974621.1	KEGG: rec:RHECIAT_CH0001159 transmembrane protein
YP_002974622.1	PFAM: transglutaminase domain protein; KEGG: ret:RHE_PE00204 hypothetical protein
YP_002974623.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: transcriptional regulator protein
YP_002974624.1	KEGG: hypothetical protein
YP_002974625.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002974626.1	KEGG: sme:SMc00958 hypothetical protein
YP_002974627.1	PFAM: transglycosylase-associated protein; KEGG: rec:RHECIAT_CH0001171 hypothetical conserved membrane protein
YP_002974628.1	PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001818 hypothetical protein
YP_002974629.1	PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001817 hypothetical protein
YP_002974630.1	KEGG: ret:RHE_CH03187 hypothetical protein
YP_002974631.1	PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0003441 probable glycosyltransferase protein
YP_002974633.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: atc:AGR_L_779 probable NTP pyrophosphohydrolase
YP_002974634.1	KEGG: rec:RHECIAT_CH0000408 hypothetical protein
YP_002974635.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rec:RHECIAT_CH0003680 purine deaminase protein
YP_002974636.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_PC0000011 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
YP_002974637.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fabG; 3-oxoacyl-(acyl carrier protein) reductase
YP_002974638.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: oan:Oant_3358 transcriptional regulator, LysR family; SNP /replace=A
YP_002974640.1	PFAM: aminoglycoside phosphotransferase; KEGG: bra:BRADO6511 phosphotransferase family protein
YP_002974641.1	KEGG: ret:RHE_CH01070 hypothetical protein
YP_002974643.1	SMART: regulatory protein ArsR; KEGG: ret:RHE_CH01046 ArsR family transcriptional regulator
YP_002974644.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001175 probable 3-oxoacyl-[acyl-carrier protein] reductase protein
YP_002974645.1	PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc2598 transcription regulator protein
YP_002974646.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eca:ECA2925 short chain dehydrogenase
YP_002974647.1	PFAM: glutathione S-transferase domain; KEGG: rso:RSc2594 glutathione-S-transferase protein
YP_002974648.1	PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc2591 transcriptional regulator transcription regulator protein
YP_002974649.1	PFAM: Limonene-12-epoxide hydrolase; KEGG: rso:RSc2590 hypothetical protein
YP_002974650.1	PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0002901 hypothetical protein
YP_002974652.1	KEGG: ccs:CCNA_02774 hypothetical protein
YP_002974654.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mex:Mext_1674 LysR substrate-binding
YP_002974655.1	PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; TrkA-N domain protein; KEGG: mch:Mchl_1991 NmrA family protein
YP_002974656.1	PFAM: Domain of unknown function DUF1857; KEGG: cak:Caul_4034 hypothetical protein
YP_002974657.1	PFAM: ThiJ/PfpI domain protein; KEGG: psb:Psyr_3319 ThiJ/PfpI
YP_002974658.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_2783 transcriptional regulator
YP_002974659.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lactoylglutathione lyase protein
YP_002974660.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01074 glutathione S-transferase protein
YP_002974661.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_CH01075 hypothetical protein
YP_002974662.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ret:RHE_CH01076 transcriptional regulator protein
YP_002974663.1	PFAM: DoxX family protein; KEGG: swi:Swit_0813 hypothetical protein
YP_002974664.1	KEGG: scl:sce6646 hypothetical protein
YP_002974665.1	PFAM: regulatory protein TetR; KEGG: transcriptional regulator protein
YP_002974666.1	SMART: regulatory protein ArsR; KEGG: scl:sce8846 ArsR family transcriptional regulator
YP_002974667.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: cak:Caul_4251 activator of HSP90 ATPase 1 family protein
YP_002974668.1	PFAM: aminoglycoside phosphotransferase; KEGG: aminoglycoside phosphotransferase
YP_002974669.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_PA0000051 adenylate cyclase protein
YP_002974671.1	PFAM: plasmid maintenance system killer; KEGG: rru:Rru_A1064 plasmid maintenance system killer
YP_002974672.1	KEGG: mlo:mlr1577 hypothetical protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_002974673.1	KEGG: oan:Oant_0631 hypothetical protein
YP_002974674.1	KEGG: rec:RHECIAT_CH0000572 hypothetical protein
YP_002974675.1	KEGG: bja:blr4007 hypothetical protein
YP_002974676.1	KEGG: hypothetical protein
YP_002974677.1	PFAM: regulatory protein TetR; KEGG: mlo:mlr4666 TetR family transcriptional regulator
YP_002974678.1	PFAM: protein of unknown function DUF159; KEGG: rec:RHECIAT_CH0002677 hypothetical protein
YP_002974679.1	KEGG: rec:RHECIAT_CH0002676 hypothetical protein
YP_002974680.1	KEGG: rec:RHECIAT_CH0001154 hypothetical protein
YP_002974681.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: short-chain dehydrogenase protein
YP_002974682.1	PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: transcriptional regulator AraC family
YP_002974683.1	PFAM: regulatory protein TetR; HMG-I and HMG-Y DNA-binding domain protein; KEGG: sme:SMa2008 transcriptional regulator
YP_002974684.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMa2009 hypothetical protein
YP_002974686.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH01040 hypothetical protein
YP_002974687.1	KEGG: ret:RHE_CH01069 hypothetical protein
YP_002974688.1	KEGG: hypothetical protein
YP_002974689.1	PFAM: dienelactone hydrolase; KEGG: rec:RHECIAT_CH0001184 hydrolase protein
YP_002974690.1	KEGG: ret:RHE_CH01091 hypothetical protein
YP_002974691.1	KEGG: ret:RHE_CH01092 terminase small subunit protein
YP_002974692.1	KEGG: ret:RHE_CH01093 terminase large subunit protein
YP_002974693.1	KEGG: rec:RHECIAT_CH0001190 hypothetical protein
YP_002974695.1	KEGG: rec:RHECIAT_CH0001192 hypothetical protein
YP_002974696.1	KEGG: rec:RHECIAT_CH0001193 hypothetical protein
YP_002974697.1	KEGG: rec:RHECIAT_CH0001194 hypothetical protein
YP_002974698.1	KEGG: smd:Smed_1340 hypothetical protein
YP_002974700.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sme:SMa1223 hypothetical protein
YP_002974703.1	PFAM: protein of unknown function DUF1488; KEGG: atu:Atu0470 hypothetical protein
YP_002974707.1	KEGG: ret:RHE_CH01120 serine protease DO-like protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein
YP_002974708.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_CH0001198 probable transcriptional regulator protein, LacI family
YP_002974709.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH01122 LysR family transcriptional regulator
YP_002974710.1	PFAM: NmrA family protein; KEGG: rec:RHECIAT_CH0001200 hypothetical protein
YP_002974711.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_CH01124 quinone oxidoreductase protein
YP_002974712.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH01125 LysR family transcriptional regulator
YP_002974713.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sme:SM_b21378 hypothetical protein
YP_002974714.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sme:SMa0112 hypothetical protein
YP_002974715.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rec:RHECIAT_CH0001202 peroxiredoxin protein
YP_002974716.1	may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ
YP_002974717.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_002974718.1	KEGG: rec:RHECIAT_CH0001213 phosphoadenosine-phosphosulfate reductase protein; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase
YP_002974719.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ret:RHE_CH01133 transcriptional regulator protein
YP_002974720.1	KEGG: rec:RHECIAT_CH0001215 hypothetical protein
YP_002974721.1	KEGG: rec:RHECIAT_CH0001216 hypothetical protein
YP_002974722.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mno:Mnod_6446 transcriptional regulator, MarR family
YP_002974723.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_0308 short-chain dehydrogenase/reductase SDR
YP_002974724.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bpy:Bphyt_4395 NADH:flavin oxidoreductase/NADH oxidase
YP_002974725.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_002974726.1	catalyzes the formation of betaine from betaine aldehyde
YP_002974727.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_002974728.1	KEGG: ret:RHE_CH01139 hypothetical protein
YP_002974729.1	KEGG: rec:RHECIAT_CH0001223 hypothetical protein
YP_002974730.1	TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_CH01141 quinone oxidoreductase protein
YP_002974731.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001227 transporter protein
YP_002974732.1	KEGG: rec:RHECIAT_CH0001228 transcriptional regulator protein
YP_002974733.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01143 transporter, permease protein
YP_002974734.1	KEGG: rec:RHECIAT_CH0001116 hypothetical protein
YP_002974735.1	PFAM: L-asparaginase II; KEGG: rec:RHECIAT_CH0001230 L-asparaginase II protein
YP_002974736.1	KEGG: hypothetical protein
YP_002974737.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: rec:RHECIAT_CH0001231 probable transcriptional regulator protein, DeoR family
YP_002974738.1	KEGG: rec:RHECIAT_CH0001232 hypothetical protein
YP_002974739.1	PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001233 glutathione S-transferase protein
YP_002974740.1	PFAM: protein of unknown function DUF661; KEGG: hypothetical protein
YP_002974741.1	KEGG: rec:RHECIAT_CH0001237 hypothetical protein
YP_002974742.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0001238 probable transcriptional regulator protein, LysR family
YP_002974743.1	PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001239 glutathione S-transferase protein
YP_002974744.1	KEGG: rec:RHECIAT_CH0001243 hypothetical protein
YP_002974745.1	KEGG: ret:RHE_CH01159 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein
YP_002974746.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rec:RHECIAT_CH0001247 glycerophosphoryl diester phosphodiesterase protein
YP_002974747.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH01162 peroxidase protein
YP_002974748.1	PFAM: tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: tetratricopeptide domain protein; KEGG: gsu:GSU2476 TPR domain-containing protein
YP_002974749.1	KEGG: rec:RHECIAT_CH0001249 exonuclease protein involved in mRNA processing
YP_002974750.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA
YP_002974752.1	KEGG: ret:RHE_CH01165 aminopeptidase protein
YP_002974753.1	KEGG: rec:RHECIAT_CH0001252 hypothetical protein
YP_002974754.1	PFAM: Domain of unknown function DUF1814; KEGG: rec:RHECIAT_CH0001253 hypothetical protein
YP_002974755.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH01167 hypothetical protein
YP_002974756.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0001255 hypothetical protein
YP_002974757.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ret:RHE_CH01169 cold shock protein
YP_002974758.1	KEGG: ret:RHE_CH01170 hypothetical protein
YP_002974759.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002974760.1	KEGG: rec:RHECIAT_CH0001259 hypothetical protein
YP_002974761.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_CH01173 MarR family transcriptional regulator
YP_002974762.1	PFAM: OsmC family protein; KEGG: ret:RHE_CH01174 organic hydroperoxide resistance (osmotically inducible) protein
YP_002974763.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0001262 probable transcriptional regulator protein, MarR family
YP_002974764.1	PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rec:RHECIAT_CH0001263 hypothetical protein
YP_002974765.1	PFAM: protein of unknown function DUF1579; KEGG: rec:RHECIAT_CH0001264 hypothetical protein
YP_002974766.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0001265 glyoxalase protein
YP_002974767.1	KEGG: hypothetical protein
YP_002974768.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001266 probable ABC transporter, ATP-binding protein
YP_002974769.1	KEGG: smd:Smed_1952 membrane-bound metal-dependent hydrolase
YP_002974770.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH01180 ABC transporter ATP-binding protein; SNP /replace=C
YP_002974771.1	PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: rec:RHECIAT_CH0001269 ATP-binding protein
YP_002974772.1	KEGG: ret:RHE_CH01182 hypothetical protein
YP_002974773.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0001271 hydrolase protein
YP_002974774.1	KEGG: ret:RHE_CH01184 hypothetical protein
YP_002974775.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_002974776.1	catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate
YP_002974777.1	PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: rec:RHECIAT_CH0001275 hemolysin protein
YP_002974778.1	PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: sme:SMc00975 chemoreceptor methyl-accepting chemotaxis transmembrane protein
YP_002974779.1	KEGG: bam:Bamb_5223 hypothetical protein
YP_002974780.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mex:Mext_2205 GCN5-related N-acetyltransferase
YP_002974781.1	KEGG: rec:RHECIAT_CH0002440 hypothetical protein
YP_002974782.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_CH01188 hypothetical protein
YP_002974784.1	PFAM: xylose isomerase; KEGG: hypothetical protein
YP_002974785.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_CH01189 alcohol dehydrogenase protein
YP_002974786.1	PFAM: aminotransferase class IV; KEGG: ret:RHE_CH01190 aminotransferase
YP_002974787.1	KEGG: rec:RHECIAT_CH0001282 hypothetical protein
YP_002974788.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0001283 probable transcriptional regulator protein, LysR family
YP_002974789.1	PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0001284 probable protein secretion protein, HlyD family
YP_002974790.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001285 probable multidrug resistance efflux system protein
YP_002974791.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH01194 adenylate cyclase protein
YP_002974792.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002974793.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01196 glutathione S-transferase protein
YP_002974794.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0001289 probable transcriptional regulator protein, TetR family
YP_002974795.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01198 multi-drug resistance efflux system protein
YP_002974796.1	KEGG: ret:RHE_CH01199 hypothetical protein
YP_002974797.1	PFAM: protein of unknown function DUF81; KEGG: rec:RHECIAT_CH0001292 hypothetical conserved membrane protein
YP_002974798.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0001293 phosphatidylethanolamine N-methyltransferase protein
YP_002974799.1	KEGG: rec:RHECIAT_CH0001294 hypothetical protein
YP_002974800.1	PFAM: manganese and iron superoxide dismutase; KEGG: rec:RHECIAT_CH0001295 superoxide dismutase protein
YP_002974801.1	PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0001296 probable phosphatase protein
YP_002974802.1	PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: transcriptional regulator protein
YP_002974803.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dehydrogenase/reductase protein
YP_002974804.1	PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0001297 transcriptional regulator protein
YP_002974805.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0001298 amino acid efflux protein, LysE family
YP_002974806.1	PFAM: cytochrome C prime; KEGG: rec:RHECIAT_CH0001303 cytochrome C556 signal peptide protein
YP_002974807.1	KEGG: rec:RHECIAT_CH0001304 diheme cytochrome C signal peptide protein
YP_002974808.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01216 glutathione S-transferase protein
YP_002974809.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001305 acetyltransferase protein
YP_002974810.1	PFAM: protein of unknown function DUF156; KEGG: rec:RHECIAT_CH0001306 hypothetical protein
YP_002974811.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ret:RHE_CH01219 cation efflux system protein
YP_002974812.1	PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0001308 beta-lactamase protein
YP_002974813.1	KEGG: cak:Caul_5096 hypothetical protein
YP_002974814.1	KEGG: rec:RHECIAT_CH0001309 glucose dehydrogenase (pyrroloquinoline-quinone) protein; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone
YP_002974815.1	PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: multidrug resistance ABC transporter
YP_002974816.1	PFAM: protein of unknown function UPF0061; KEGG: rec:RHECIAT_CH0001310 hypothetical protein
YP_002974817.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001311 probable efflux transporter protein
YP_002974818.1	PFAM: homocysteine S-methyltransferase; KEGG: smd:Smed_0597 homocysteine S-methyltransferase
YP_002974819.1	PFAM: regulatory protein TetR; KEGG: pzu:PHZ_c0609 transcriptional regulator, TetR family
YP_002974820.1	PFAM: protein of unknown function DUF1697; KEGG: ret:RHE_CH01225 hypothetical protein
YP_002974821.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: ret:RHE_CH01226 protease II protein
YP_002974822.1	PFAM: protein of unknown function DUF930; KEGG: ret:RHE_CH01227 hypothetical protein
YP_002974823.1	PFAM: polysaccharide deacetylase; KEGG: rec:RHECIAT_CH0001315 polysaccharide deacetylase protein
YP_002974824.1	KEGG: hypothetical protein
YP_002974825.1	PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0001316 sarcosine oxidase protein
YP_002974826.1	PFAM: protein of unknown function UPF0118; KEGG: ret:RHE_CH01230 permease protein
YP_002974827.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0001319 glyoxylase protein
YP_002974828.1	PFAM: UspA domain protein; KEGG: ret:RHE_CH01233 universal stress protein
YP_002974829.1	PFAM: Hly-III family protein; KEGG: ret:RHE_CH01234 hemolysin III protein
YP_002974830.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001322 probable phosphinothricin acetyltransferase (antibiotic resistance) protein
YP_002974831.1	PFAM: pentapeptide repeat protein; KEGG: rec:RHECIAT_CH0001323 hypothetical protein
YP_002974832.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_002974833.1	KEGG: rec:RHECIAT_CH0001337 hypothetical protein
YP_002974834.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_002974835.1	subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport
YP_002974836.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_002974837.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport
YP_002974838.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_002974839.1	subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_002974840.1	subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_002974841.1	PFAM: ROSMUCR transcriptional regulator; KEGG: ret:RHE_CH01249 transcriptional regulator protein - nodulation competitiveness determinant
YP_002974842.1	PFAM: Fe-S metabolism associated SufE; KEGG: rec:RHECIAT_CH0001346 Fe-S metabolism associated protein
YP_002974843.1	KEGG: rec:RHECIAT_CH0001347 hypothetical protein
YP_002974844.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0001348 probable two-component sensor histidine kinase protein
YP_002974845.1	PFAM: peptidoglycan-binding domain 1 protein; KEGG: rec:RHECIAT_CH0001349 peptidoglycan binding (cell wall degradation) protein
YP_002974846.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr1976 transcriptional regulator
YP_002974847.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ank:AnaeK_2444 short-chain dehydrogenase/reductase SDR
YP_002974848.1	PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: ret:RHE_CH01254 methyl-accepting chemotaxis protein
YP_002974849.1	PFAM: protein of unknown function DUF1491; KEGG: ret:RHE_CH01255 hypothetical protein
YP_002974850.1	KEGG: rec:RHECIAT_CH0001352 hypothetical protein
YP_002974851.1	KEGG: hypothetical protein
YP_002974852.1	KEGG: rec:RHECIAT_CH0001354 hypothetical protein
YP_002974854.1	KEGG: ret:RHE_CH01259 hypothetical protein
YP_002974855.1	PFAM: protein of unknown function DUF1214; KEGG: rec:RHECIAT_CH0001356 hypothetical conserved membrane protein
YP_002974856.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rec:RHECIAT_CH0001357 cell wall biosynthesis penicillin-binding protein, 1A family
YP_002974858.1	PFAM: protein of unknown function UPF0153; KEGG: rec:RHECIAT_CH0001358 hypothetical protein
YP_002974859.1	PFAM: Integral membrane protein TerC; KEGG: TerC family protein ; K05794 tellurite resistance protein TerC
YP_002974860.1	KEGG: hypothetical protein
YP_002974861.1	PFAM: Exopolysaccharide synthesis ExoD; KEGG: exopolysaccharide biosynthesis protein
YP_002974862.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0001359 probable transcriptional regulator protein, TetR family
YP_002974863.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH01264 short chain dehydrogenase
YP_002974864.1	PFAM: fatty acid desaturase; KEGG: rec:RHECIAT_CH0001361 probable fatty acid desaturase protein
YP_002974866.1	KEGG: msl:Msil_1057 hypothetical protein
YP_002974868.1	KEGG: rec:RHECIAT_CH0001363 hypothetical protein
YP_002974869.1	PFAM: major facilitator superfamily MFS_1; KEGG: efflux transporter
YP_002974870.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nodD3; nod transcriptional regulator protein
YP_002974871.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0001366 probable lactoylglutathione lyase protein
YP_002974872.1	PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: transglutaminase-like protein
YP_002974873.1	PFAM: protein of unknown function DUF1488; KEGG: sme:SMa1910 hypothetical protein
YP_002974874.1	KEGG: ret:RHE_CH01267 hypothetical protein
YP_002974875.1	KEGG: ret:RHE_CH01268 hypothetical protein
YP_002974876.1	KEGG: ret:RHE_CH01269 hypothetical protein
YP_002974877.1	PFAM: chaperonin Cpn10; KEGG: ret:RHE_CH01270 10 kDa chaperonin, heat shock protein
YP_002974878.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia and high GC gram-positive bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the R. leguminosarum protein in this cluster is transcribed under anaerobic conditions and is not necessary for growth
YP_002974879.1	KEGG: ret:RHE_CH01272 hypothetical protein
YP_002974880.1	KEGG: sme:SMa0121 hypothetical protein
YP_002974881.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: oxidoreductase protein
YP_002974882.1	PFAM: xylose isomerase; KEGG: myo-inositol catabolism protein ; K03335 myo-inositol catabolism protein IolE
YP_002974883.1	PFAM: xylose isomerase; KEGG: iolE; myo-inositol catabolism protein ; K06605 myo-inositol catabolism protein IolH
YP_002974884.1	PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: transcriptional regulator protein ; K02529 LacI family transcriptional regulator
YP_002974885.1	SMART: PDZ/DHR/GLGF domain protein; KEGG: rec:RHECIAT_CH0001367 probable serine protease protein
YP_002974886.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: transcriptional regulator protein
YP_002974887.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_C7081 oxidoreductase
YP_002974888.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0001368 probable transcriptional regulator protein, GntR family
YP_002974889.1	PFAM: protein of unknown function DUF983; KEGG: rec:RHECIAT_CH0001369 hypothetical conserved membrane protein
YP_002974890.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0001370 transcriptional regulator protein, LysR family
YP_002974891.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01278 glutathione S-transferase protein
YP_002974892.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ret:RHE_CH01279 pyridoxine 5'-phosphate oxidase protein
YP_002974893.1	PFAM: protein of unknown function DUF1348; KEGG: rec:RHECIAT_CH0001373 hypothetical protein
YP_002974894.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH01281 TetR family transcriptional regulator
YP_002974895.1	KEGG: rec:RHECIAT_CH0001375 hypothetical protein
YP_002974896.1	KEGG: rec:RHECIAT_CH0001376 hypothetical protein
YP_002974897.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: ret:RHE_CH01283 hypothetical protein
YP_002974898.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001378 transporter, permease protein; SNP /replace=A
YP_002974899.1	KEGG: ret:RHE_CH01285 hypothetical protein
YP_002974900.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0001381 two-component response regulator protein
YP_002974901.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0001382 two-component sensor histidine kinase protein
YP_002974902.1	KEGG: rec:RHECIAT_CH0001383 outer membrane lipoprotein-related protein
YP_002974903.1	TIGRFAM: cytochrome C-type biogenesis protein CcmI; PFAM: tetratricopeptide TPR_2 repeat protein; KEGG: ret:RHE_CH01289 cytochrome-C-type biogenesis protein
YP_002974904.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome C maturation system; periplasmic protein anchored to the inner membrane
YP_002974905.1	TIGRFAM: cytochrome C-type biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: rec:RHECIAT_CH0001386 cytochrome C biosynthesis protein
YP_002974906.1	PFAM: cytochrome C biogenesis protein; KEGG: rec:RHECIAT_CH0001387 cytochrome C biogenesis protein
YP_002974907.1	KEGG: rec:RHECIAT_CH0001388 serine protease Do protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein
YP_002974908.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0001389 two-component response regulator protein
YP_002974909.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH01295 two-component sensor histidine kinase protein
YP_002974910.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_002974911.1	PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001098 probable glutathione S-transferase protein
YP_002974912.1	KEGG: rec:RHECIAT_CH0001392 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein
YP_002974913.1	TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: rec:RHECIAT_CH0001393 aminopeptidase N protein
YP_002974914.1	KEGG: mcpV2; methyl-accepting chemotaxis protein
YP_002974915.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH01299 permease protein
YP_002974916.1	KEGG: ret:RHE_CH01300 hypothetical protein
YP_002974918.1	KEGG: rec:RHECIAT_CH0001397 hypothetical protein
YP_002974919.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rec:RHECIAT_CH0001398 probable DNA-directed DNA polymerase protein (uracil-DNA glycosylase)
YP_002974920.1	KEGG: rec:RHECIAT_CH0001399 molecular chaperone heat shock protein (HSP70)
YP_002974921.1	PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0001400 probable multidrug efflux transporter protein
YP_002974922.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0001401 probable protein secretion protein, HlyD family
YP_002974923.1	PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_CH01306 aminoglycoside phosphotransferase protein (antibiotic resistance protein)
YP_002974924.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH01307 3-oxoacyl-[acyl-carrier-protein] reductase protein
YP_002974925.1	PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; KEGG: ret:RHE_CH01308 electrotransfer ubiquinone oxidoreductase protein
YP_002974926.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0001405 hypothetical protein
YP_002974927.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001406 permease membrane protein
YP_002974928.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0001407 transcriptional regulator protein, AsnC family
YP_002974929.1	KEGG: ret:RHE_CH01312 magnesium (mg2+) transporter protein; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein
YP_002974930.1	TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: zinc-dependent alcohol dehydrogenase protein
YP_002974931.1	PFAM: helix-turn-helix HxlR type; KEGG: transcriptional regulator protein
YP_002974932.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001409 permease protein
YP_002974933.1	PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: ret:RHE_CH01314 diacylglycerol kinase protein
YP_002974934.1	PFAM: glutamine synthetase catalytic region; KEGG: ret:RHE_CH01315 glutamine synthetase protein
YP_002974935.1	PFAM: aminotransferase class-III; KEGG: ret:RHE_CH01316 aminotransferase
YP_002974936.1	KEGG: atc:AGR_C_1993 hypothetical protein
YP_002974937.1	PFAM: protein of unknown function UPF0156; KEGG: rec:RHECIAT_CH0001414 hypothetical protein
YP_002974938.1	KEGG: rec:RHECIAT_CH0001415 glycosyltransferase protein
YP_002974939.1	KEGG: rec:RHECIAT_CH0001416 glycosyltransferase protein
YP_002974940.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH01319 glycosyltransferase
YP_002974941.1	PFAM: glycosyl transferase family 39; KEGG: rec:RHECIAT_CH0001418 glycosyltransferase protein
YP_002974942.1	KEGG: ret:RHE_CH01321 hypothetical protein
YP_002974943.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; tetratricopeptide TPR_2 repeat protein; KEGG: ret:RHE_CH01322 RNA polymerase sigma factor protein (sigma-70)
YP_002974944.1	PFAM: YCII-related; KEGG: ret:RHE_CH01323 hypothetical protein
YP_002974945.1	PFAM: YCII-related; KEGG: ret:RHE_CH01324 hypothetical protein
YP_002974946.1	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0001423 hypothetical protein
YP_002974947.1	KEGG: ret:RHE_CH01326 hypothetical protein
YP_002974948.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_002974949.1	KEGG: rec:RHECIAT_CH0001426 hypothetical protein
YP_002974950.1	PFAM: plasmid stabilization system; KEGG: pde:Pden_0144 plasmid stabilization system
YP_002974951.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: sme:SM_b20628 hypothetical protein
YP_002974952.1	KEGG: ret:RHE_CH01328 hypothetical protein
YP_002974953.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: ret:RHE_CH01329 hypothetical protein
YP_002974954.1	catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate
YP_002974955.1	KEGG: rec:RHECIAT_CH0001430 hypothetical protein
YP_002974956.1	KEGG: rec:RHECIAT_CH0001431 hypothetical protein
YP_002974957.1	KEGG: rec:RHECIAT_CH0001432 hypothetical protein
YP_002974958.1	PFAM: regulatory protein LysR; KEGG: ret:RHE_CH01336 LysR family transcriptional regulator
YP_002974960.1	KEGG: ret:RHE_CH01337 hypothetical protein
YP_002974961.1	KEGG: rec:RHECIAT_CH0001436 hypothetical protein
YP_002974962.1	PFAM: multi antimicrobial extrusion protein MatE; KEGG: rec:RHECIAT_CH0001437 multidrug efflux protein, MatE family
YP_002974963.1	KEGG: mlo:msr3035 hypothetical protein
YP_002974964.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH01340 transcriptional regulator protein
YP_002974965.1	PFAM: protein of unknown function DUF1127; KEGG: hypothetical protein
YP_002974966.1	PFAM: Myo-inositol catabolism IolB domain protein; KEGG: ret:RHE_CH01341 myo-inositol catabolism protein
YP_002974967.1	PFAM: xylose isomerase; KEGG: iolE; myo-inositol catabolism protein ; K03335 myo-inositol catabolism protein IolE
YP_002974968.1	PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ret:RHE_CH01343 myo-inositol catabolism, acetolactate synthase protein
YP_002974969.1	PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0001441 5-dehydro-2-deoxygluconokinase protein (myo-inositol catabolism)
YP_002974970.1	PFAM: sugar isomerase (SIS); KEGG: rec:RHECIAT_CH0001442 transcriptional regulator protein
YP_002974971.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0001443 dehydrogenase/oxidoreductase protein
YP_002974972.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0001444 probable ferredoxin-NAD(+) reductase protein
YP_002974973.1	PFAM: porin; KEGG: ret:RHE_CH01349 porin outer membrane protein
YP_002974974.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH01379 hydrolase protein
YP_002974975.1	PFAM: Lytic transglycosylase catalytic; KEGG: rec:RHECIAT_CH0001448 probable murein transglycosylase protein
YP_002974976.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_002974977.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002974978.1	PFAM: protein of unknown function DUF88; KEGG: ret:RHE_CH01383 hypothetical protein
YP_002974979.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_002974980.1	KEGG: rec:RHECIAT_CH0001453 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase protein; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002974981.1	KEGG: ret:RHE_CH01386 hypothetical protein
YP_002974982.1	KEGG: ret:RHE_CH01387 hypothetical protein
YP_002974983.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002974984.1	KEGG: rec:RHECIAT_CH0001457 signal peptidase I protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein
YP_002974985.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002974986.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002974987.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; KEGG: rec:RHECIAT_CH0001460 probable transcriptional regulator protein, CRP/FNR family
YP_002974988.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_CH01393 two-component response regulator protein
YP_002974989.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_002974990.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_CH01395 oxidoreductase protein
YP_002974991.1	PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: rec:RHECIAT_CH0001464 molybdenum cofactor sulfurase protein
YP_002974992.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: ret:RHE_CH01397 metal-dependent phosphohydrolase protein
YP_002974993.1	KEGG: rec:RHECIAT_CH0001466 signal-transducer protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002974994.1	KEGG: ret:RHE_CH01399 hypothetical protein
YP_002974995.1	PFAM: superoxide dismutase copper/zinc binding; KEGG: rec:RHECIAT_CH0001468 superoxide dismutase protein
YP_002974996.1	PFAM: MscS Mechanosensitive ion channel; KEGG: rec:RHECIAT_CH0001469 mechanosensitive ion channel protein
YP_002974997.1	KEGG: ret:RHE_CH01402 tyrosine phosphatase protein
YP_002974998.1	KEGG: rec:RHECIAT_CH0001471 hydrolase protein
YP_002974999.1	TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rec:RHECIAT_CH0001472 aminomethyltransferase (glycine cleavage) protein
YP_002975000.1	KEGG: ret:RHE_CH01405 hypothetical protein
YP_002975001.1	KEGG: rec:RHECIAT_CH0001474 hypothetical protein
YP_002975002.1	KEGG: rec:RHECIAT_CH0001475 hypothetical protein
YP_002975003.1	PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH01407 ADP-ribose phosphorylase
YP_002975004.1	PFAM: protein of unknown function UPF0060; KEGG: rec:RHECIAT_CH0001477 hypothetical protein
YP_002975005.1	PFAM: protein of unknown function DUF159; KEGG: ret:RHE_CH01409 hypothetical protein
YP_002975006.1	KEGG: atc:AGR_C_1959 hypothetical protein
YP_002975007.1	KEGG: rec:RHECIAT_CH0001479 exopolysaccharide production CDP-diacylglycerol-serine O-phosphatidyltransferase protein; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_002975008.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_002975009.1	PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001481 ABC transporter, ATP-binding protein
YP_002975010.1	PFAM: peptidoglycan-binding LysM; KEGG: ret:RHE_CH01416 peptidoglycan binding protein
YP_002975011.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0001483 hypothetical protein
YP_002975012.1	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001488 permease protein
YP_002975013.1	TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: ret:RHE_CH01419 alpha-isopropylmalate/homocitrate synthase family transferase
YP_002975014.1	KEGG: rec:RHECIAT_CH0001490 proline iminopeptidase protein; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold
YP_002975015.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH01421 hypothetical protein
YP_002975016.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0001492 glutathione-dependent formaldehyde-activating protein
YP_002975017.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH01423 hypothetical protein
YP_002975018.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002975019.1	PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: ret:RHE_CH01426 glycosyl hydrolase, lysozyme protein
YP_002975020.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001498 probable oxidoreductase protein
YP_002975021.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_002975022.1	PFAM: Colicin V production protein; KEGG: ret:RHE_CH01429 colicin V production protein
YP_002975023.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002975025.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ret:RHE_CH01431 LysE family amino acid efflux protein
YP_002975026.1	KEGG: alr; alanine racemase ; K01775 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase
YP_002975027.1	unwinds double stranded DNA
YP_002975028.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002975029.1	KEGG: rec:RHECIAT_CH0001506 hypothetical protein
YP_002975030.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002975031.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002975032.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0001509 oxidoreductase protein
YP_002975033.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: ret:RHE_CH01442 [acyl-carrier protein] S-malonyltransferase protein
YP_002975034.1	catalyzes the formation of 3-hydroxyacyl-ACP from 3-keto-acyl-ACP; in the rhizobia this protein interacts with NodF to allow for the synthesis of highly polyunsaturated fatty acids necessary for nodulation
YP_002975035.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002975036.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002975037.1	PFAM: aminodeoxychorismate lyase; KEGG: rec:RHECIAT_CH0001514 aminodeoxychorismate lyase protein
YP_002975038.1	PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: ret:RHE_CH01447 hypothetical protein
YP_002975039.1	Essential for recycling GMP and indirectly, cGMP
YP_002975040.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002975041.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_002975042.1	KEGG: rec:RHECIAT_CH0001519 probable peptidyl-prolyl cis-trans isomerase protein
YP_002975043.1	PFAM: organic solvent tolerance protein; KEGG: ret:RHE_CH01452 organic solvent tolerance protein OstA
YP_002975044.1	PFAM: permease YjgP/YjgQ family protein; KEGG: ret:RHE_CH01453 permease protein
YP_002975045.1	PFAM: permease YjgP/YjgQ family protein; KEGG: ret:RHE_CH01454 permease protein
YP_002975046.1	PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ret:RHE_CH01455 phosphatase protein
YP_002975047.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_002975048.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_002975050.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0001526 D-galactose-1-dehydrogenase protein
YP_002975051.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: rec:RHECIAT_CH0001527 probable prolyl oligopeptidase protein
YP_002975052.1	PFAM: polysaccharide deacetylase; KEGG: rec:RHECIAT_CH0001535 polysaccharide deacetylase protein
YP_002975053.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001536 ABC transporter, ATP-binding protein
YP_002975054.1	KEGG: rec:RHECIAT_CH0001537 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002975055.1	PFAM: DinB family protein; KEGG: ret:RHE_CH01470 hypothetical protein
YP_002975056.1	PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001539 beta-aryl ether cleaving enzyme, lignin degradation protein
YP_002975057.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002975058.1	KEGG: ret:RHE_CH01473 hypothetical protein
YP_002975059.1	PFAM: protein of unknown function DUF1470; KEGG: rec:RHECIAT_CH0001542 hypothetical protein
YP_002975060.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0001543 probable ABC transporter, permease protein
YP_002975061.1	PFAM: molybdopterin biosynthesis MoaE protein; KEGG: rec:RHECIAT_CH0001544 molybdopterin converting factor protein, subunit 2
YP_002975062.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rec:RHECIAT_CH0001545 molybdopterin converting factor protein, subunit 1
YP_002975063.1	KEGG: rec:RHECIAT_CH0001546 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_002975064.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002975065.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH01480 short chain dehydrogenase
YP_002975066.1	PFAM: porin; OmpA domain protein transmembrane region-containing protein; KEGG: ret:RHE_CH01481 outer membrane protein
YP_002975067.1	PFAM: protein of unknown function DUF519; KEGG: rec:RHECIAT_CH0001551 hypothetical protein
YP_002975068.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: ret:RHE_CH01484 anaerobic dehydrogenase protein
YP_002975069.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0001553 ADP-ribose pyrophosphatase protein
YP_002975070.1	TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; amidohydrolase; KEGG: rec:RHECIAT_CH0001554 phosphonate metabolism protein
YP_002975071.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_002975072.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002975073.1	PFAM: protein of unknown function UPF0118; KEGG: rec:RHECIAT_CH0001557 permease protein
YP_002975074.1	KEGG: rec:RHECIAT_CH0001558 hypothetical protein
YP_002975075.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_002975076.1	PFAM: Ppx/GppA phosphatase; KEGG: rec:RHECIAT_CH0001560 exopolyphosphatase protein
YP_002975077.1	PFAM: Integrase catalytic region; KEGG: hne:HNE_3190 ISHne2, transposase
YP_002975078.1	KEGG: rec:RHECIAT_CH0001561 hypothetical protein
YP_002975079.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH01494 adenylate cyclase protein
YP_002975080.1	KEGG: rec:RHECIAT_CH0001563 ribonuclease III protein; TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease
YP_002975081.1	PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: rec:RHECIAT_CH0001564 probable metallo-oxidoreductase protein
YP_002975082.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002975083.1	PFAM: beta-lactamase; KEGG: beta-lactamase class C protein
YP_002975084.1	PFAM: regulatory protein TetR; KEGG: transcriptional regulator protein
YP_002975085.1	KEGG: ret:RHE_CH01498 hypothetical protein
YP_002975086.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002975087.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0001568 hypothetical protein
YP_002975088.1	TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: rec:RHECIAT_CH0001569 death-on-curing family (prophage maintenance system killer) protein
YP_002975089.1	TIGRFAM: addiction module antidote; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: rec:RHECIAT_CH0001570 transcriptional regulator protein
YP_002975090.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH01501 permease protein
YP_002975091.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_002975092.1	PFAM: RDD domain containing protein; KEGG: ret:RHE_CH01503 hypothetical protein
YP_002975093.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002975094.1	KEGG: ret:RHE_CH01505 hypothetical protein
YP_002975095.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0001576 probable transcriptional regulator protein, MarR family
YP_002975096.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding domain 1 protein; KEGG: ret:RHE_CH01507 peptidoglycan binding protein (involved in cell wall degradation)
YP_002975097.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002975098.1	PFAM: ATP-cone domain protein; KEGG: rec:RHECIAT_CH0001579 hypothetical protein
YP_002975099.1	TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_CH0001580 5-amino-6-(5-phosphoribosylamino)uracil reductase protein
YP_002975100.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002975101.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: rec:RHECIAT_CH0001582 glucose-1-phosphate thymidylyltransferase protein
YP_002975102.1	KEGG: rec:RHECIAT_CH0001583 dTDP-4-dehydrorhamnose reductase protein; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; NAD-dependent epimerase/dehydratase
YP_002975103.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0001584 dTDP-glucose-4,6-dehydratase protein
YP_002975104.1	KEGG: rec:RHECIAT_CH0001585 dTDP-4-dehydrorhamnose 3,5-epimerase protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_002975105.1	KEGG: rec:RHECIAT_CH0001586 hypothetical protein
YP_002975107.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH01522 acetyltransferase protein
YP_002975108.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_CH01523 hypothetical protein
YP_002975109.1	KEGG: rec:RHECIAT_CH0001594 hypothetical protein
YP_002975110.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002975111.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_002975112.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_002975113.1	PFAM: SmpA/OmlA domain protein; KEGG: rec:RHECIAT_CH0001599 outer membrane protein
YP_002975114.1	PFAM: Ubiquinol-cytochrome C chaperone; KEGG: rec:RHECIAT_CH0001600 hypothetical protein
YP_002975115.1	PFAM: protein of unknown function DUF177; KEGG: ret:RHE_CH01530 hypothetical protein
YP_002975116.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002975117.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002975118.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_002975119.1	PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rec:RHECIAT_CH0001605 probable transcriptional regulator protein, MerR family
YP_002975120.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_CH01535 two-component response regulator protein
YP_002975121.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0001607 two-component sensor histidine kinase protein
YP_002975122.1	PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001608 hypothetical protein
YP_002975123.1	KEGG: rec:RHECIAT_CH0001609 hypothetical protein
YP_002975124.1	TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; KEGG: rec:RHECIAT_CH0001610 cellulose synthase protein
YP_002975125.1	PFAM: cellulose synthase subunit B; KEGG: ret:RHE_CH01543 cellulose synthase protein
YP_002975126.1	PFAM: glycoside hydrolase family 8; KEGG: ret:RHE_CH01544 endoglucanase (glycoside hydrolase) protein
YP_002975127.1	KEGG: ret:RHE_CH01545 hypothetical protein
YP_002975128.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0001614 (DL)-glycerol-3-phosphatase protein
YP_002975129.1	PFAM: methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; methyltransferase type 12; KEGG: rec:RHECIAT_CH0001616 probable 3-demethylubiquinone-9 3-methyltransferase protein
YP_002975130.1	KEGG: rec:RHECIAT_CH0001617 hypothetical protein
YP_002975131.1	PFAM: protein of unknown function DUF982; KEGG: mes:Meso_0848 hypothetical protein
YP_002975132.1	KEGG: ret:RHE_CH01550 hypothetical protein
YP_002975133.1	KEGG: hypothetical protein
YP_002975134.1	KEGG: rec:RHECIAT_CH0001620 hypothetical protein
YP_002975135.1	PFAM: ROK family protein; KEGG: ret:RHE_CH01552 ROK family transcriptional regulator
YP_002975136.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001623 probable acetyltransferase protein
YP_002975137.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0001624 sugar ABC transporter, substrate-binding protein
YP_002975138.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0001625 sugar ABC transporter, permease protein
YP_002975139.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH01557 sugar ABC transporter, permease protein
YP_002975140.1	KEGG: rec:RHECIAT_CH0001627 hypothetical conserved membrane protein
YP_002975141.1	KEGG: rec:RHECIAT_CH0001628 probable glycosyltransferase protein; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate glucose phosphotransferase; PFAM: sugar transferase
YP_002975142.1	PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0001629 probable glycosyltransferase protein
YP_002975143.1	PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01561 polysaccharide export system protein
YP_002975144.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0001631 non-specific protein-tyrosine kinase (lipopolysaccharide biosynthesis) protein
YP_002975145.1	KEGG: rec:RHECIAT_CH0001632 hypothetical protein
YP_002975146.1	KEGG: rec:RHECIAT_CH0001633 hypothetical protein
YP_002975147.1	PFAM: cytochrome oxidase assembly; KEGG: rec:RHECIAT_CH0001634 probable cytochrome C oxidase protein
YP_002975148.1	PFAM: protein of unknown function DUF81; KEGG: rec:RHECIAT_CH0001635 hypothetical conserved membrane protein
YP_002975149.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_002975150.1	catalyzes the formation of putrescine from agmatine
YP_002975151.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01569 florfenicol/chloramphenicol resistance transporter protein
YP_002975152.1	forms a direct contact with the tRNA during translation
YP_002975153.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002975154.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0001640 probable transcriptional regulator protein, LysR family
YP_002975155.1	KEGG: rec:RHECIAT_CH0001641 hypothetical protein
YP_002975156.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002975157.1	KEGG: rec:RHECIAT_CH0001643 permease protein
YP_002975158.1	KEGG: rec:RHECIAT_CH0001645 hypothetical protein
YP_002975159.1	PFAM: CoA-binding domain protein; KEGG: ret:RHE_CH01576 hypothetical protein
YP_002975160.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_002975161.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: rec:RHECIAT_CH0001655 hypothetical protein
YP_002975162.1	KEGG: rec:RHECIAT_CH0001656 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002975163.1	TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: xac:XAC1577 ABC transporter phosphate binding protein
YP_002975164.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smt:Smal_1310 phosphate ABC transporter, inner membrane subunit PstC
YP_002975165.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xoo:XOO2464 ABC transporter phosphate permease
YP_002975166.1	KEGG: smt:Smal_1308 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase
YP_002975167.1	PFAM: cytochrome P450; KEGG: ret:RHE_CH01585 cytochrome P450 hydroxylase protein
YP_002975168.1	KEGG: ret:RHE_CH01586 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002975169.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002975170.1	binds and unfolds substrates as part of the ClpXP protease
YP_002975171.1	KEGG: rec:RHECIAT_CH0001661 ATP-dependent protease La protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase
YP_002975172.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: rec:RHECIAT_CH0001662 bacterial nucleoid DNA-binding protein
YP_002975173.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001663 permease protein
YP_002975174.1	KEGG: ret:RHE_CH01592 alkaline phosphatase protein
YP_002975175.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_CH01593 oxidoreductase protein
YP_002975176.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_CH01594 hypothetical protein
YP_002975177.1	KEGG: ret:RHE_CH01595 hypothetical protein
YP_002975178.1	KEGG: ret:RHE_CH01596 hypothetical protein
YP_002975179.1	PFAM: glutathione peroxidase; KEGG: rec:RHECIAT_CH0001669 glutathione peroxidase protein
YP_002975180.1	KEGG: rec:RHECIAT_CH0001670 hypothetical protein
YP_002975182.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975183.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_002975184.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975185.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975186.1	KEGG: ret:RHE_CH01607 hypothetical protein
YP_002975187.1	catalyzes the transfer of electrons from NADH to ubiquinone
YP_002975188.1	part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase
YP_002975189.1	KEGG: rec:RHECIAT_CH0001682 protein in NADH-ubiquinone oxidoreductase complex
YP_002975190.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975191.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975192.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975193.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975194.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975195.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002975196.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975197.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002975198.1	TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: rec:RHECIAT_CH0001691 biotin--[acetyl-CoA carboxylase] synthetase protein
YP_002975199.1	PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: rec:RHECIAT_CH0001692 metallo-beta-lactamase family protein
YP_002975200.1	KEGG: ret:RHE_CH01621 lactoylglutathione lyase protein; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase
YP_002975201.1	PFAM: protein of unknown function DUF1467; KEGG: rec:RHECIAT_CH0001694 hypothetical protein
YP_002975202.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002975203.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ret:RHE_CH01624 lipoprotein ABC transporter, permease protein
YP_002975204.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001697 probable lipoprotein ABC transporter, ATP-binding protein
YP_002975205.1	KEGG: rec:RHECIAT_CH0001698 hypothetical protein
YP_002975206.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_002975207.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH01628 hypothetical protein
YP_002975208.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_002975209.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001702 acetyltransferase protein
YP_002975210.1	KEGG: ret:RHE_CH01631 hypothetical protein
YP_002975211.1	KEGG: rec:RHECIAT_CH0001704 hypothetical protein
YP_002975212.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0001705 two-component response regulator protein
YP_002975213.1	involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP
YP_002975214.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002975215.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01635 ABC transporter permease
YP_002975216.1	PFAM: protein of unknown function DUF983; KEGG: rec:RHECIAT_CH0001709 hypothetical protein
YP_002975217.1	KEGG: rec:RHECIAT_CH0001710 exoribonuclease R protein; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: RNA binding S1 domain protein; SNP /replace=T
YP_002975218.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_002975219.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rec:RHECIAT_CH0001712 DNA processing chain A protein
YP_002975220.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_002975221.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_002975222.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_002975223.1	PFAM: acyl-CoA dehydrogenase; acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_CH01643 acyl-CoA dehydrogenase protein
YP_002975224.1	TIGRFAM: ribonuclease, Rne/Rng family; KEGG: rec:RHECIAT_CH0001717 probable ribonuclease protein
YP_002975225.1	KEGG: ret:RHE_CH01646 N-acetylmuramoyl-L-alanine amidase protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin
YP_002975226.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rec:RHECIAT_CH0001720 penicillin binding peptidoglycan synthetase protein
YP_002975227.1	catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA
YP_002975228.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sugar ABC transporter ; K10441 ribose transport system ATP-binding protein
YP_002975229.1	PFAM: inner-membrane translocator; KEGG: sugar ABC transporter ; K10440 ribose transport system permease protein
YP_002975230.1	KEGG: bcs:BCAN_A1667 rhizopine-binding protein precursor
YP_002975231.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bcs:BCAN_A1666 short chain dehydrogenase
YP_002975232.1	PFAM: Dak kinase; KEGG: smd:Smed_3823 glycerone kinase
YP_002975233.1	TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: sme:SM_b20313 glycerone kinase
YP_002975234.1	PFAM: Dak kinase; sugar-binding domain protein; KEGG: dihydroxyacetone kinase ; K05878 dihydroxyacetone kinase, N-terminal domain
YP_002975235.1	TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: dihydroxyacetone kinase, L subunit ; K05879 dihydroxyacetone kinase, C-terminal domain
YP_002975236.1	KEGG: rec:RHECIAT_CH0001722 hypothetical protein
YP_002975237.1	KEGG: rec:RHECIAT_CH0001723 hypothetical protein
YP_002975238.1	catalyzes the phosphorylation of NAD to NADP
YP_002975241.1	KEGG: rec:RHECIAT_CH0001727 hypothetical protein
YP_002975242.1	KEGG: ret:RHE_CH01654 metalloprotease inhibitor (transcriptional regulator) protein
YP_002975243.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ret:RHE_CH01655 tRNA/rRNA methyltransferase protein
YP_002975244.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002975246.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0001733 probable nucleoside-diphosphate-sugar epimerase protein
YP_002975247.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002975248.1	Modulates Rho-dependent transcription termination
YP_002975249.1	binds directly to 23S ribosomal RNA
YP_002975250.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002975251.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002975252.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002975253.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002975254.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_002975255.1	KEGG: rec:RHECIAT_CH0001743 hypothetical protein
YP_002975256.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002975257.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002975258.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002975259.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002975260.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002975261.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002975262.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002975263.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002975264.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002975265.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002975266.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002975267.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002975268.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002975269.1	one of the stabilizing components for the large ribosomal subunit
YP_002975270.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002975271.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002975272.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002975273.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002975274.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_002975275.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002975276.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002975277.1	binds 5S rRNA along with protein L5 and L25
YP_002975278.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002975279.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002975280.1	late assembly protein
YP_002975281.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002975282.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002975283.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002975284.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002975285.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002975286.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002975287.1	KEGG: rec:RHECIAT_CH0001776 hypothetical protein
YP_002975288.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_002975289.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_002975290.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002975292.1	KEGG: ret:RHE_CH01705 hypothetical protein
YP_002975293.1	PFAM: protein of unknown function DUF1232; KEGG: ret:RHE_CH01706 hypothetical protein
YP_002975294.1	KEGG: rec:RHECIAT_CH0001782 serine protease precursor protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein
YP_002975295.1	PFAM: AAA ATPase; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001783 ATPase protein
YP_002975296.1	PFAM: Domain of unknown function DUF1883; KEGG: rec:RHECIAT_CH0001785 hypothetical protein
YP_002975297.1	KEGG: hypothetical protein
YP_002975299.1	PFAM: dihydrodipicolinate synthetase; KEGG: dapA; dihydrodipicolinate synthase ; K01714 dihydrodipicolinate synthase; SNP /replace=A
YP_002975301.1	PFAM: alpha/beta hydrolase fold; KEGG: acp:A2cp1_3368 alpha/beta hydrolase
YP_002975302.1	KEGG: ret:RHE_CH01710 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein
YP_002975303.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH01711 dehydrogenase protein
YP_002975304.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0001788 probable transcriptional regulator protein, LysR family
YP_002975305.1	PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: ret:RHE_CH01713 nucleoside 2-deoxyribosyltransferase protein
YP_002975306.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ret:RHE_CH01714 esterase/lipase/thioesterase family protein
YP_002975307.1	PFAM: carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_CH0001791 hypothetical protein
YP_002975308.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: rec:RHECIAT_CH0001792 two-component sensor histidine kinase protein
YP_002975309.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_CH0001794 transcriptional regulator protein, LacI family
YP_002975310.1	PFAM: coenzyme A transferase; KEGG: ret:RHE_CH01720 acyl-CoA transferase protein
YP_002975311.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rec:RHECIAT_CH0001796 probable enoyl-CoA hydratase protein
YP_002975312.1	PFAM: aldehyde Dehydrogenase; KEGG: rec:RHECIAT_CH0001797 probable NAD-dependent L-sorbosone dehydrogenase protein
YP_002975313.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0001798 probable sugar ABC transporter, substrate-binding protein
YP_002975314.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003982 probable sugar ABC transporter, permease protein
YP_002975315.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH03707 sugar ABC transporter, permease protein
YP_002975316.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003980 probable sugar ABC transporter, ATP-binding protein
YP_002975317.1	PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: ret:RHE_CH01727 dehydrogenase protein
YP_002975318.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sme:SMc04390 L-sorbose dehydrogenase, FAD dependent protein
YP_002975319.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0001804 probable succinate dehydrogenase protein
YP_002975320.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0001805 oxidoreductase protein
YP_002975321.1	KEGG: rec:RHECIAT_CH0001806 hypothetical protein
YP_002975322.1	TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0001808 exodeoxyribonuclease III protein
YP_002975323.1	KEGG: ret:RHE_CH01732 hypothetical protein
YP_002975324.1	KEGG: ret:RHE_CH01733 hypothetical protein
YP_002975325.1	PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: ret:RHE_CH01734 two-component response regulator protein
YP_002975326.1	PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rec:RHECIAT_CH0001813 probable two-component sensor histidine kinase protein
YP_002975327.1	KEGG: rec:RHECIAT_CH0001814 hypothetical protein
YP_002975328.1	KEGG: ret:RHE_CH01736 ubiquinone/menaquinone biosynthesis methyltransferase protein
YP_002975329.1	KEGG: rec:RHECIAT_CH0001816 hypothetical protein
YP_002975330.1	PFAM: protein of unknown function DUF1236; KEGG: ret:RHE_CH01737 hypothetical protein
YP_002975332.1	PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0001819 hypothetical protein
YP_002975333.1	KEGG: rec:RHECIAT_CH0001820 hypothetical protein
YP_002975334.1	KEGG: rec:RHECIAT_CH0001821 hypothetical protein
YP_002975335.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_3272 regulatory protein
YP_002975336.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding domain 1 protein; KEGG: ret:RHE_CH01741 hypothetical protein
YP_002975337.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_002975338.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0001824 probable transcriptional regulator protein, AsnC family
YP_002975339.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH01744 AsnC family transcriptional regulator
YP_002975340.1	KEGG: ret:RHE_CH01745 4-hydroxyphenylpyruvate dioxygenase protein; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase
YP_002975341.1	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine
YP_002975342.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rec:RHECIAT_CH0001828 hydrolase, fumarylacetoacetate hydrolase family protein
YP_002975343.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01748 maleylacetoacetate isomerase protein
YP_002975344.1	KEGG: rsh:Rsph17029_3205 hypothetical protein
YP_002975346.1	KEGG: rpb:RPB_2536 hypothetical protein
YP_002975347.1	KEGG: rpe:RPE_2429 hypothetical protein
YP_002975348.1	PFAM: Integrase catalytic region; KEGG: rpe:RPE_2430 integrase, catalytic region
YP_002975349.1	KEGG: pde:Pden_0457 hypothetical protein
YP_002975353.1	KEGG: rec:RHECIAT_CH0003344 hypothetical protein
YP_002975355.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pfo:Pfl01_1036 NADH:flavin oxidoreductase/NADH oxidase
YP_002975356.1	PFAM: helix-turn-helix HxlR type; KEGG: transcriptional regulator protein
YP_002975357.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: eca:ECA2935 hypothetical protein
YP_002975359.1	KEGG: ret:RHE_CH01240 hypothetical protein
YP_002975360.1	PFAM: heat shock protein Hsp20; KEGG: rec:RHECIAT_PC0000697 probable small heat shock protein
YP_002975361.1	KEGG: rec:RHECIAT_PC0000531 hypothetical protein
YP_002975363.1	PFAM: MscS Mechanosensitive ion channel; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: mechanosensitive ion channel protein
YP_002975364.1	PFAM: ferritin Dps family protein; KEGG: atc:AGR_L_212 hypothetical protein
YP_002975365.1	KEGG: atc:AGR_pAT_694 hypothetical protein
YP_002975366.1	KEGG: msl:Msil_3585 cytochrome P460
YP_002975367.1	PFAM: major intrinsic protein; KEGG: scl:sce5615 MIP family channel protein
YP_002975368.1	KEGG: lpp:lpp1221 hypothetical protein
YP_002975369.1	PFAM: Nitrile hydratase alpha chain; KEGG: dsh:Dshi_1849 nitrile hydratase
YP_002975370.1	KEGG: bac:BamMC406_5178 hypothetical protein
YP_002975371.1	KEGG: bph:Bphy_3436 hypothetical protein
YP_002975372.1	KEGG: smd:Smed_5524 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_002975373.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: atc:AGR_L_218 hypothetical protein
YP_002975374.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aba:Acid345_3728 response regulator receiver protein
YP_002975375.1	KEGG: bja:blr7069 hypothetical protein
YP_002975376.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: msl:Msil_2566 alkylhydroperoxidase like protein, AhpD family
YP_002975377.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr6272 transcriptional regulatory protein
YP_002975378.1	KEGG: mms:mma_3330 hypothetical protein
YP_002975379.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ppw:PputW619_0231 two component LuxR family transcriptional regulator
YP_002975380.1	PFAM: alpha/beta hydrolase fold; KEGG: met:M446_1520 alpha/beta hydrolase fold
YP_002975381.1	PFAM: beta-lactamase; KEGG: bja:blr7067 cyclase
YP_002975382.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mlo:mll3525 hypothetical protein
YP_002975383.1	PFAM: protein of unknown function DUF1348; KEGG: mrd:Mrad2831_4684 hypothetical protein
YP_002975384.1	PFAM: peptidase C14 caspase catalytic subunit p20; SMART: peptidase C14, caspase precursor p45, core; KEGG: xau:Xaut_0773 peptidase C14 caspase catalytic subunit P20
YP_002975385.1	KEGG: smd:Smed_5524 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_002975386.1	PFAM: protein of unknown function DUF983; KEGG: smd:Smed_1973 protein of unknown function DUF983
YP_002975387.1	PFAM: protein of unknown function DUF302; KEGG: bav:BAV3286 exported protein
YP_002975388.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0813 short-chain dehydrogenase/reductase
YP_002975389.1	PFAM: alpha/beta hydrolase fold; KEGG: cak:Caul_0299 alpha/beta hydrolase fold
YP_002975390.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bpy:Bphyt_1098 short-chain dehydrogenase/reductase SDR
YP_002975391.1	KEGG: bpy:Bphyt_2428 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; serine/threonine protein kinase; PAC repeat-containing protein
YP_002975392.1	PFAM: beta-lactamase; KEGG: mpo:Mpop_4163 beta-lactamase
YP_002975393.1	KEGG: rec:RHECIAT_CH0003341 hypothetical protein
YP_002975394.1	PFAM: AAA ATPase; peptidase M41; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003340 ATP-dependent hydrolase protein
YP_002975396.1	TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: rec:RHECIAT_CH0003314 DNA-cytosine methyltransferase protein
YP_002975397.1	PFAM: hypothetical protein; KEGG: hypothetical protein
YP_002975399.1	KEGG: sme:SMa2012 hypothetical protein
YP_002975400.1	PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: rsq:Rsph17025_1822 UvrD/REP helicase
YP_002975401.1	KEGG: oan:Oant_4527 hypothetical protein
YP_002975402.1	KEGG: mag:amb3763 transposase
YP_002975404.1	KEGG: smd:Smed_1216 metallophosphoesterase
YP_002975407.1	PFAM: SMC domain protein; KEGG: bja:bll1930 hypothetical protein
YP_002975408.1	PFAM: peptidase C24 Calicivirus polyprotein ORF 1; KEGG: rpd:RPD_2286 hypothetical protein
YP_002975409.1	PFAM: metallophosphoesterase; KEGG: smd:Smed_1216 metallophosphoesterase
YP_002975411.1	KEGG: psa:PST_3923 predicted non-heme iron hydroxylase MppO
YP_002975413.1	KEGG: bja:blr0073 hypothetical protein
YP_002975414.1	KEGG: bja:blr0072 hypothetical protein
YP_002975415.1	KEGG: bja:blr0074 hypothetical protein
YP_002975416.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002975417.1	KEGG: vco:VC0395_0102 hypothetical protein
YP_002975418.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_002975419.1	PFAM: UspA domain protein; KEGG: rec:RHECIAT_CH0001841 probable universal stress protein
YP_002975420.1	PFAM: molybdopterin binding domain; KEGG: ret:RHE_CH01756 competence-damage associated protein (nucleotide-utilizing enzyme related tomolybdopterin-biosynthesis enzyme MoeA)
YP_002975421.1	stationary phase protein that binds TrpR repressor
YP_002975423.1	PFAM: VanZ family protein; KEGG: ret:RHE_CH01758 hypothetical protein
YP_002975424.1	catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic
YP_002975425.1	KEGG: ret:RHE_CH01760 hypothetical protein
YP_002975426.1	KEGG: rec:RHECIAT_CH0001848 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002975427.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001849 major facilitator family transporter protein
YP_002975428.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_CH0001850 3-oxoacyl-[acyl-carrier-protein] reductase protein
YP_002975429.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0001851 probable transcriptional regulator protein, TetR family
YP_002975430.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ret:RHE_CH01764 [acyl-carrier-protein] phosphodiesterase protein
YP_002975431.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0001853 probable transcriptional regulator protein, LysR family
YP_002975432.1	periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_002975434.1	PFAM: type IV pilus assembly PilZ; KEGG: rec:RHECIAT_CH0001855 hypothetical protein
YP_002975435.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001856 hypothetical conserved membrane protein
YP_002975436.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0001857 leucine-responsive transcriptional regulator protein, AsnC family
YP_002975437.1	KEGG: rec:RHECIAT_CH0001858 alanine dehydrogenase protein; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein
YP_002975438.1	PFAM: protein of unknown function DUF1203; KEGG: ret:RHE_CH01771 hypothetical protein
YP_002975439.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_PC0000208 methyltransferase protein
YP_002975441.1	KEGG: rec:RHECIAT_CH0001860 acetyltransferase protein
YP_002975442.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: ret:RHE_CH01773 thiosulfate sulfurtransferase protein
YP_002975443.1	PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: rec:RHECIAT_CH0001862 alanyl-tRNA synthetase protein
YP_002975444.1	CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis
YP_002975445.1	TIGRFAM: anti-sigma factor, , ChrR family; KEGG: rec:RHECIAT_CH0001864 anti-sigma factor transcriptional activator protein
YP_002975446.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001865 short-chain dehydrogenase/oxidoreductase protein
YP_002975447.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0001866 cyclopropane-fatty-acyl-phospholipid synthase protein
YP_002975448.1	PFAM: protein of unknown function DUF1365; KEGG: rec:RHECIAT_CH0001867 hypothetical protein
YP_002975449.1	PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0001868 amine oxidase protein
YP_002975450.1	PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rec:RHECIAT_CH0001869 deoxyribodipyrimidine photo-lyase protein
YP_002975451.1	KEGG: rec:RHECIAT_CH0001870 hypothetical protein
YP_002975452.1	KEGG: atc:AGR_L_1503 hypothetical protein
YP_002975453.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH01779 haloacid dehalogenase-like hydrolase
YP_002975454.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; molydopterin dinucleotide-binding region; KEGG: ret:RHE_CH01780 nitrate reductase large subunit protein
YP_002975455.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rec:RHECIAT_CH0001873 nitrite reductase (NAD(P)H) protein, small subunit
YP_002975456.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: rec:RHECIAT_CH0001874 nitrite reductase (NAD(P)H) protein, large subunit
YP_002975457.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001875 probable nitrate transporter protein
YP_002975458.1	KEGG: rec:RHECIAT_CH0001876 nitrate ABC transporter, substrate-binding protein
YP_002975459.1	PFAM: ANTAR domain protein; response regulator receiver; KEGG: ret:RHE_CH01785 two-component response regulator protein
YP_002975460.1	PFAM: glutathione S-transferase domain; KEGG: sit:TM1040_1931 glutathione S-transferase-like
YP_002975461.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: nolRch; transcriptional regulator protein (repressor of nodulation genes)
YP_002975462.1	KEGG: ABC transporter
YP_002975463.1	PFAM: Luciferase-like monooxygenase; KEGG: ssuD; alkanesulfonate monooxygenase protein
YP_002975464.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: atc:AGR_L_3113 hypothetical protein
YP_002975465.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: atc:AGR_L_3114 hypothetical protein
YP_002975466.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rec:RHECIAT_CH0001879 peroxidase protein
YP_002975467.1	PFAM: glutathione S-transferase domain; KEGG: swi:Swit_1664 glutathione S-transferase domain-containing protein
YP_002975468.1	PFAM: Lytic transglycosylase catalytic; KEGG: rec:RHECIAT_CH0001880 probable glycosyltransferase protein
YP_002975469.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: rec:RHECIAT_CH0001881 hypothetical protein
YP_002975470.1	PFAM: MOFRL domain protein; KEGG: ret:RHE_CH01794 hydroxypyruvate reductase protein
YP_002975471.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dapE1; succinyl-diaminopimelate desuccinylase protein
YP_002975472.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: potA; spermidine/putrescine ABC transporter
YP_002975473.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: potC; spermidine/putrescine ABC transporter
YP_002975474.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: potB; spermidine/putrescine ABC transporter
YP_002975475.1	PFAM: extracellular solute-binding protein family 1; KEGG: potD; spermidine/putrescine ABC transporter
YP_002975476.1	PFAM: amidohydrolase; KEGG: ade; adenine deaminase ; K01486 adenine deaminase
YP_002975477.1	KEGG: ret:RHE_CH01795 hypothetical protein
YP_002975478.1	KEGG: rpt:Rpal_2556 hypothetical protein
YP_002975479.1	KEGG: rpa:RPA2311 hypothetical protein
YP_002975480.1	KEGG: cff:CFF8240_1205 hypothetical protein
YP_002975481.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: pde:Pden_1170 ABC transporter
YP_002975482.1	PFAM: transport system permease protein; ABC transporter; KEGG: hmuU; hemin transport system ; K02015 iron complex transport system permease protein
YP_002975483.1	PFAM: periplasmic binding protein; KEGG: rpa:RPA2308 periplasmic iron siderophore binding protein of ABC transporter
YP_002975484.1	TIGRFAM: esterase, PHB depolymerase family; KEGG: sme:SMa1961 polyhydroxybutyrate depolymerase
YP_002975485.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_2496 helix-turn-helix domain-containing protein
YP_002975486.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1266 alcohol dehydrogenase
YP_002975487.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr5280 glucose dehydrogenase
YP_002975488.1	PFAM: Catalase domain protein; KEGG: smd:Smed_4123 catalase
YP_002975489.1	KEGG: ret:RHE_CH01798 hypothetical protein
YP_002975491.1	KEGG: ret:RHE_CH01805 hypothetical protein
YP_002975492.1	KEGG: rec:RHECIAT_CH0001892 hypothetical protein
YP_002975493.1	KEGG: ret:RHE_CH01807 hypothetical protein
YP_002975498.1	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: ret:RHE_CH01809 protein-L-isoaspartate O-methyltransferase protein
YP_002975499.1	KEGG: rec:RHECIAT_CH0001896 hypothetical protein
YP_002975500.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002975501.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rec:RHECIAT_CH0001898 probable outer membrane protein
YP_002975502.1	SMART: Sel1 domain protein repeat-containing protein; KEGG: ret:RHE_CH00733 exopolysaccharide production negative regulator protein
YP_002975503.1	TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0001901 exodeoxyribonuclease III protein
YP_002975504.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rec:RHECIAT_CH0001902 hypothetical protein
YP_002975505.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_002975506.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002975507.1	PFAM: Sporulation domain protein; KEGG: rec:RHECIAT_CH0001905 hypothetical protein
YP_002975508.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: rec:RHECIAT_CH0001906 probable beta-N-acetylhexosaminidase protein
YP_002975509.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: rec:RHECIAT_CH0001907 chromosome segregation and condensation protein A
YP_002975510.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rec:RHECIAT_CH0001908 chromosome segregation and condensation protein B
YP_002975511.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_002975512.1	mediates the export of protein precursors bearing twin-arginine signal peptides
YP_002975513.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rec:RHECIAT_CH0001911 sec-independent protein translocase protein
YP_002975514.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002975515.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_002975516.1	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins
YP_002975517.1	PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: ret:RHE_CH01829 lipoprotein precursor protein
YP_002975518.1	PFAM: protein of unknown function DUF815; KEGG: ret:RHE_CH01830 hypothetical protein; SNP /replace=C
YP_002975519.1	TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: ret:RHE_CH01831 preprotein tranlocase protein
YP_002975520.1	part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002975521.1	PFAM: protein of unknown function DUF498; KEGG: rec:RHECIAT_CH0001919 hypothetical protein
YP_002975522.1	PFAM: Squalene/phytoene synthase; KEGG: rec:RHECIAT_CH0001920 phytoene synthase protein
YP_002975523.1	KEGG: rec:RHECIAT_CH0001921 hypothetical protein
YP_002975524.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_002975525.1	PFAM: protein of unknown function DUF1127; KEGG: rec:RHECIAT_CH0001923 hypothetical protein
YP_002975526.1	PFAM: protein of unknown function DUF1127; KEGG: rec:RHECIAT_CH0001924 hypothetical protein
YP_002975527.1	KEGG: rec:RHECIAT_CH0001926 hypothetical conserved membrane protein
YP_002975528.1	KEGG: rec:RHECIAT_CH0001927 hypothetical conserved membrane protein
YP_002975529.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002975530.1	KEGG: ret:RHE_CH01843 hypothetical protein
YP_002975531.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rec:RHECIAT_CH0001931 hypothetical protein
YP_002975532.1	catalyzes the conversion of NADPH to NADH
YP_002975533.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rec:RHECIAT_CH0001934 L-lactate dehydrogenase (cytochrome) protein
YP_002975534.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_002975535.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_002975536.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0001937 probable transcriptional regulator protein, TetR family
YP_002975537.1	KEGG: rec:RHECIAT_CH0001938 hypothetical protein
YP_002975538.1	KEGG: ret:RHE_CH01851 hypothetical protein
YP_002975539.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_002975540.1	catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins
YP_002975541.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_002975542.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002975543.1	KEGG: rec:RHECIAT_CH0001944 hypothetical protein
YP_002975544.1	KEGG: rec:RHECIAT_CH0001945 hypothetical protein
YP_002975545.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH01860 acetyltransferase protein
YP_002975546.1	PFAM: protein of unknown function DUF1294; KEGG: ret:RHE_CH01861 inner membrane protein
YP_002975547.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002975548.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH01863 acetyltransferase protein
YP_002975550.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001950 acetyltransferase protein
YP_002975551.1	Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis
YP_002975552.1	KEGG: rec:RHECIAT_CH0001952 hypothetical protein
YP_002975553.1	KEGG: rec:RHECIAT_CH0001953 hypothetical protein
YP_002975554.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_002975555.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002975556.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002975557.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_002975558.1	PFAM: DSBA oxidoreductase; KEGG: rec:RHECIAT_CH0001958 probable outer membrane protein
YP_002975559.1	PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0001959 aspartate transaminase protein
YP_002975560.1	KEGG: ret:RHE_CH01874 hypothetical protein
YP_002975561.1	TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0001961 poly-beta-hydroxybutyrate polymerase protein
YP_002975562.1	KEGG: rec:RHECIAT_CH0001962 hypothetical protein
YP_002975563.1	PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0001963 succinyldiaminopimelate aminotransferase protein
YP_002975564.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002975565.1	KEGG: rec:RHECIAT_CH0001965 hypothetical protein
YP_002975566.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rec:RHECIAT_CH0001966 single-stranded-DNA-specific exonuclease protein
YP_002975567.1	PFAM: peptidase M15A; protein of unknown function DUF882; KEGG: rec:RHECIAT_CH0001970 hypothetical protein
YP_002975568.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0001971 lactoylglutathione lyase methylglyoxalase protein
YP_002975569.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ret:RHE_CH01885 cold shock protein
YP_002975570.1	PFAM: protein of unknown function DUF192; KEGG: rec:RHECIAT_CH0001973 hypothetical protein
YP_002975572.1	PFAM: ETC complex I subunit conserved region; KEGG: ret:RHE_CH01888 NADH-ubiquinone oxidoreductase protein
YP_002975573.1	PFAM: Hemolysin-type calcium-binding region; KEGG: ret:RHE_CH01892 RTX toxin hemolysin-type calcium-binding protein
YP_002975574.1	KEGG: rec:RHECIAT_CH0000408 hypothetical protein
YP_002975575.1	KEGG: hypothetical protein
YP_002975576.1	PFAM: protein of unknown function DUF982; KEGG: hypothetical protein
YP_002975577.1	KEGG: rec:RHECIAT_CH0002760 hypothetical protein
YP_002975578.1	KEGG: rec:RHECIAT_CH0001983 hypothetical protein
YP_002975579.1	KEGG: rec:RHECIAT_CH0001984 hypothetical protein
YP_002975580.1	KEGG: rec:RHECIAT_CH0001986 hypothetical protein
YP_002975581.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001987 general L-amino acid ABC transporter, ATP-binding protein
YP_002975582.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0001988 general L-amino acid ABC transporter, permease protein; SNP /replace=C
YP_002975583.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0001989 general L-amino acid ABC transporter, permease protein
YP_002975584.1	KEGG: rec:RHECIAT_CH0001990 general L-amino acid ABC transporter, substrate-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3
YP_002975585.1	catalyzes the formation of L-homocysteine from cystathionine
YP_002975586.1	PFAM: monooxygenase FAD-binding; KEGG: ret:RHE_CH01900 salicylate hydroxylase protein
YP_002975587.1	KEGG: rec:RHECIAT_CH0001994 hypothetical protein
YP_002975588.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH01902 hydrolase protein
YP_002975589.1	KEGG: rec:RHECIAT_CH0001996 serine acetyltransferase protein; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; transferase hexapeptide repeat containing protein
YP_002975590.1	KEGG: rec:RHECIAT_CH0001997 hypothetical protein
YP_002975591.1	TIGRFAM: phasin family protein; KEGG: rec:RHECIAT_CH0001998 hypothetical protein
YP_002975592.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_002975593.1	KEGG: rec:RHECIAT_CH0002000 ATP-dependent Clp protease protein, ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase
YP_002975594.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: mlo:mll5499 hypothetical protein
YP_002975595.1	PFAM: histidine triad (HIT) protein; KEGG: ret:RHE_CH01908 HIT family hydrolase
YP_002975596.1	PFAM: protein of unknown function DUF482; KEGG: ret:RHE_CH01909 hypothetical protein
YP_002975597.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rec:RHECIAT_CH0002003 probable glycerophosphoryl diester phosphodiesterase protein
YP_002975598.1	PFAM: endoribonuclease L-PSP; KEGG: ret:RHE_CH01911 translation initiation inhibitor protein
YP_002975599.1	PFAM: Domain of unknown function DUF1849; KEGG: rec:RHECIAT_CH0002005 hypothetical protein
YP_002975600.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002975601.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002975602.1	Catalyzes the phosphorylation of UMP to UDP
YP_002975603.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002975604.1	KEGG: rec:RHECIAT_CH0002014 undecaprenyl pyrophosphate synthetase protein; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_002975605.1	PFAM: phosphatidate cytidylyltransferase; KEGG: ret:RHE_CH01918 phosphatidate cytidylyltransferase protein
YP_002975606.1	KEGG: rec:RHECIAT_CH0002016 metallopeptidase protein; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein
YP_002975607.1	TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: ret:RHE_CH01920 outer membrane lipoprotein
YP_002975608.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_002975609.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002975610.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_002975611.1	PFAM: protein of unknown function DUF1009; KEGG: ret:RHE_CH01924 hypothetical protein
YP_002975612.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_002975613.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_002975614.1	TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: rec:RHECIAT_CH0002024 hypothetical protein
YP_002975615.1	Represses a number of genes involved in the response to DNA damage
YP_002975616.1	KEGG: ret:RHE_CH01929 hypothetical protein
YP_002975617.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_002975618.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002975619.1	PFAM: Septum formation initiator; KEGG: ret:RHE_CH01932 septum formation initiator protein
YP_002975620.1	TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; KEGG: rec:RHECIAT_CH0002030 pyruvate dehydrogenase (acetyl-transferring) protein, alpha subunit
YP_002975621.1	catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase
YP_002975622.1	TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: rec:RHECIAT_CH0002032 dihydrolipoamide S-acetyltransferase protein
YP_002975623.1	PFAM: lipolytic protein G-D-S-L family; KEGG: rec:RHECIAT_CH0002033 probable arylesterase protein
YP_002975624.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002034 acetyltransferase protein
YP_002975625.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002975626.1	KEGG: ret:RHE_CH01939 hypothetical protein
YP_002975627.1	PFAM: transglycosylase-associated protein; KEGG: rec:RHECIAT_CH0002037 transglycosylase-associated protein
YP_002975628.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_002975629.1	KEGG: ret:RHE_CH01942 DNA topology modulation kinase FlaR-like protein
YP_002975630.1	KEGG: DNA topology modulation kinase FlaR-like protein
YP_002975631.1	PFAM: cyclase/dehydrase; KEGG: rec:RHECIAT_CH0002041 oligoketide cyclase/dehydrase protein
YP_002975632.1	PFAM: CinA domain protein; KEGG: rec:RHECIAT_CH0002042 competence-damage inducible protein (nucleotide-utilizing enzyme)
YP_002975633.1	bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations
YP_002975634.1	TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; NADH:flavin oxidoreductase/NADH oxidase; KEGG: rec:RHECIAT_CH0002044 tRNA-dihydrouridine synthase protein
YP_002975635.1	PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH01947 nitrogen regulation (two-component sensor histidine kinase) protein
YP_002975636.1	KEGG: rec:RHECIAT_CH0002046 two-component response regulator nitrogen regulation protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase
YP_002975637.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002053 probable aldo/keto reductase protein (voltage-gated potassium channel beta subunit)
YP_002975640.1	KEGG: rec:RHECIAT_CH0002063 two-component sensor histidine kinase nitrogen regulation protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein
YP_002975641.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: rec:RHECIAT_CH0002064 two-component response regulator nitrogen regulation protein
YP_002975642.1	catalyzes the transamination of D-amino acids and their alpha-keto acids
YP_002975643.1	Stimulates the elongation of poly(A) tails
YP_002975644.1	TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: ret:RHE_CH01955 GTP-binding protein
YP_002975645.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_002975646.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rec:RHECIAT_CH0002069 guanine/cytosine deaminase protein
YP_002975647.1	KEGG: ret:RHE_CH01958 uroporphyrin-III C-methyltransferase protein; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_002975648.1	KEGG: rec:RHECIAT_CH0002072 hypothetical protein
YP_002975649.1	PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: ret:RHE_CH01960 sulfite reductase (NADPH) protein
YP_002975650.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0002074 hypothetical protein
YP_002975651.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rec:RHECIAT_CH0002075 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase protein
YP_002975652.1	PFAM: Auxin Efflux Carrier; KEGG: rec:RHECIAT_CH0002076 malonate transporter protein
YP_002975653.1	PFAM: beta-lactamase; KEGG: atc:AGR_L_1113 hypothetical protein
YP_002975654.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH01048 3-oxoacyl-[acyl-carrier protein] reductase protein
YP_002975655.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mlo:mlr2206 permease protein of amino acid ABC transporter
YP_002975656.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr2204 permease protein of amino acid ABC transporter
YP_002975657.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0237 amino acid ABC transporter permease
YP_002975658.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: mlo:mlr2201 binding protein component of amino acid ABC transporter
YP_002975659.1	PFAM: saccharopine dehydrogenase; KEGG: mlo:mlr2199 lysine oxoglutarate reductase/saccharopine dehydrogenase
YP_002975660.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mlo:mlr2198 transcriptional regulator
YP_002975661.1	PFAM: Ion transport 2 domain protein ; Ion transport protein; KEGG: sme:SM_b20361 ionic voltage-gated channel protein
YP_002975662.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0004013 3-oxoacyl-[acyl-carrier-protein] reductase protein
YP_002975663.1	PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: rec:RHECIAT_CH0002077 cytochrome C biogenesis protein
YP_002975664.1	KEGG: shl:Shal_2177 hypothetical protein
YP_002975667.1	KEGG: rec:RHECIAT_PC0000147 hypothetical protein
YP_002975670.1	PFAM: CsbD family protein; KEGG: sme:SM_b21330 hypothetical protein
YP_002975671.1	KEGG: rec:RHECIAT_CH0000675 hypothetical protein
YP_002975672.1	KEGG: rec:RHECIAT_CH0002084 hypothetical protein
YP_002975673.1	PFAM: monooxygenase FAD-binding; KEGG: ret:RHE_CH02023 hypothetical protein
YP_002975674.1	KEGG: ret:RHE_CH02024 hypothetical protein
YP_002975675.1	KEGG: rpe:RPE_0700 hypothetical protein
YP_002975676.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH02030 hypothetical protein
YP_002975677.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH02031 gualylate cyclase protein
YP_002975678.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH02032 hypothetical protein
YP_002975679.1	KEGG: hypothetical protein
YP_002975680.1	KEGG: ret:RHE_CH02033 hypothetical protein
YP_002975681.1	PFAM: major facilitator superfamily MFS_1; KEGG: pde:Pden_3045 major facilitator superfamily MFS_1
YP_002975682.1	PFAM: monooxygenase FAD-binding; KEGG: ret:RHE_CH02034 hypothetical protein
YP_002975683.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_CH02035 MarR family transcriptional regulator
YP_002975684.1	KEGG: ret:RHE_CH02049 hypothetical protein
YP_002975685.1	KEGG: rec:RHECIAT_CH0002097 hypothetical protein
YP_002975686.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0002098 dehydrogenase protein
YP_002975687.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0002099 probable transcriptional regulator protein, ROK family
YP_002975688.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH02053 sugar ABC transporter, substrate-binding protein
YP_002975689.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002101 probable sugar ABC transporter, permease protein
YP_002975690.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02055 sugar ABC transporter, permease protein
YP_002975691.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_CH02056 sugar ABC transporter, ATP-binding protein
YP_002975692.1	KEGG: rec:RHECIAT_CH0000568 hypothetical protein
YP_002975693.1	KEGG: atu:Atu0796 peptidase
YP_002975694.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0001144 glutathione-dependent formaldehyde-activating protein
YP_002975695.1	KEGG: bid:Bind_3529 hypothetical protein
YP_002975696.1	catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate
YP_002975697.1	PFAM: Mannonate dehydratase; KEGG: rec:RHECIAT_CH0002105 mannonate dehydratase protein
YP_002975698.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0002106 probable transcriptional regulator protein, GntR family
YP_002975699.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_CH02060 dipeptide ABC transporter, substrate-binding protein
YP_002975700.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02061 dipeptide ABC transporter, permease protein
YP_002975701.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02062 dipeptide ABC transporter, permease protein
YP_002975702.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH02063 dipeptide ABC transporter, ATP-binding protein
YP_002975703.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH02064 dipeptide ABC transporter, ATP-binding protein
YP_002975704.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ret:RHE_CH02066 LacI family transcription regulator
YP_002975705.1	KEGG: ret:RHE_CH02067 hypothetical protein
YP_002975706.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH02068 sugar ABC transporter, substrate-binding protein
YP_002975707.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02069 sugar ABC transporter, permease protein
YP_002975708.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02070 sugar ABC transporter, permease protein
YP_002975709.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002118 probable sugar ABC transporter, ATP-binding protein
YP_002975710.1	KEGG: rec:RHECIAT_CH0002119 hypothetical protein
YP_002975711.1	KEGG: rec:RHECIAT_CH0002121 hypothetical protein
YP_002975712.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH02073 hypothetical protein
YP_002975713.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH02074 HlyD family protein secretion protein
YP_002975714.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH02075 ABC transporter, ATP-binding protein
YP_002975715.1	PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0002125 ABC transporter, permease protein
YP_002975716.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hypothetical protein
YP_002975717.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_CH02077 GntR family transcriptional regulator
YP_002975718.1	PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: rec:RHECIAT_CH0002128 ferredoxin-NADP+ reductase protein
YP_002975719.1	KEGG: rec:RHECIAT_CH0002129 phosphatidylcholine synthase protein
YP_002975720.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002130 quinone oxidoreductase protein
YP_002975721.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002131 probable ABC transporter, ATP-binding protein
YP_002975722.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0002132 probable ABC transporter, permease protein
YP_002975723.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH02083 sugar ABC transporter, permease protein
YP_002975724.1	PFAM: basic membrane lipoprotein; KEGG: rec:RHECIAT_CH0002134 ABC transporter, substrate-binding protein
YP_002975725.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0002135 probable sugar ABC transporter, substrate-binding protein
YP_002975726.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH02086 sugar ABC transporter, ATP-binding protein
YP_002975727.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0002137 probable sugar ABC transporter, permease protein
YP_002975728.1	membrane component of a sugar ABC transporter system
YP_002975729.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_CH02089 GntR family transcriptional regulator
YP_002975730.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_002975731.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_002975732.1	PFAM: protein of unknown function DUF502; KEGG: rec:RHECIAT_CH0002142 hypothetical protein
YP_002975733.1	catalyzes branch migration in Holliday junction intermediates
YP_002975734.1	PFAM: protein of unknown function DUF339; KEGG: ret:RHE_CH02094 hypothetical protein
YP_002975735.1	KEGG: ret:RHE_CH02095 transcription-repair coupling factor (TrcF) protein; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; helicase domain protein; DEAD/DEAH box helicase; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_002975736.1	PFAM: OsmC family protein; KEGG: ret:RHE_CH02096 redox protein
YP_002975737.1	PFAM: DSBA oxidoreductase; KEGG: ret:RHE_CH02098 dithiol-disulfide isomerase protein (involved in polyketide biosynthesis)
YP_002975738.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_CH02099 peptide ABC transporter, substrate-binding protein
YP_002975739.1	PFAM: Invasion associated locus B family protein; KEGG: rec:RHECIAT_CH0002151 invasion-associated protein
YP_002975740.1	TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: ret:RHE_CH02101 hypothetical protein
YP_002975741.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: rec:RHECIAT_CH0002153 glutamine synthetase protein
YP_002975742.1	PFAM: nitrogen regulatory protein P-II; KEGG: rec:RHECIAT_CH0002154 nitrogen regulatory protein P-II
YP_002975743.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: rec:RHECIAT_CH0002155 carbohydrate kinase protein
YP_002975744.1	PFAM: protein of unknown function DUF808; KEGG: mch:Mchl_2082 protein of unknown function DUF808
YP_002975745.1	PFAM: protein of unknown function DUF72; KEGG: ret:RHE_CH02105 hypothetical protein
YP_002975746.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02106 acetyltransferase protein
YP_002975747.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_002975748.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002975750.1	PFAM: multiple antibiotic resistance (MarC)-related protein; Integral membrane protein TerC; KEGG: ret:RHE_CH02109 multiple antibiotic resistance transporter protein
YP_002975751.1	negatively supercoils closed circular double-stranded DNA
YP_002975752.1	KEGG: ret:RHE_CH02111 hypothetical protein
YP_002975753.1	KEGG: rec:RHECIAT_CH0002163 hypothetical protein
YP_002975754.1	KEGG: rec:RHECIAT_CH0002164 hypothetical protein
YP_002975755.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002975756.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rec:RHECIAT_CH0002166 peptidyl-prolyl cis-trans isomerase A signal peptide protein
YP_002975757.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rec:RHECIAT_CH0002167 peptidyl-prolyl cis-trans isomerase B signal peptide protein
YP_002975758.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_002975759.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002975760.1	PFAM: acyltransferase; KEGG: ret:RHE_CH02118 acetyltransferase protein
YP_002975761.1	KEGG: ret:RHE_CH02119 hypothetical protein
YP_002975762.1	FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.
YP_002975763.1	PFAM: helix-turn-helix HxlR type; KEGG: ret:RHE_CH02121 transcriptional regulator protein
YP_002975764.1	KEGG: rec:RHECIAT_CH0002182 hypothetical protein
YP_002975765.1	KEGG: bja:bll2373 hypothetical protein
YP_002975766.1	KEGG: sfu:Sfum_0359 alpha amylase, catalytic region
YP_002975767.1	KEGG: rec:RHECIAT_CH0002184 hypothetical protein
YP_002975769.1	KEGG: rec:RHECIAT_CH0002185 hypothetical protein
YP_002975771.1	PFAM: peptidase M16 domain protein; KEGG: rec:RHECIAT_CH0002192 probable peptidase/protease protein
YP_002975772.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02133 GNAT family acetyltransferase
YP_002975773.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_CH02134 MarR family transcriptional regulator
YP_002975774.1	PFAM: major facilitator superfamily MFS_1; KEGG: smd:Smed_1275 major facilitator superfamily MFS_1
YP_002975775.1	PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: speB2; agmatinase protein ; K01480 agmatinase
YP_002975776.1	PFAM: protein of unknown function DUF205; KEGG: cak:Caul_3589 hypothetical protein
YP_002975777.1	PFAM: transcriptional regulator domain protein; tetratricopeptide TPR_4; KEGG: ret:RHE_CH02136 adenylate cyclase
YP_002975778.1	PFAM: protein of unknown function DUF937; KEGG: ret:RHE_CH01088 hypothetical protein
YP_002975779.1	KEGG: rec:RHECIAT_CH0001182 hypothetical protein
YP_002975780.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rec:RHECIAT_CH0002195 peroxiredoxin protein
YP_002975781.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0002196 adenylate/guanylate cyclase protein
YP_002975782.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: ret:RHE_CH02790 acetolactate synthase 3 catalytic subunit
YP_002975783.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ret:RHE_PF00218 ribose operon transcriptional regulator
YP_002975784.1	KEGG: ret:RHE_PF00217 sugar ABC transporter substrate-binding protein
YP_002975785.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004011 probable sugar ABC transporter, ATP-binding protein
YP_002975786.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0004010 probable sugar ABC transporter, permease protein
YP_002975787.1	PFAM: Integrase catalytic region; KEGG: smd:Smed_4886 integrase catalytic region
YP_002975788.1	KEGG: ret:RHE_PD00189 hypothetical protein
YP_002975789.1	PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00190 insertion sequence transposase protein
YP_002975790.1	KEGG: rec:RHECIAT_CH0003310 superfamily I DNA and RNA helicase protein
YP_002975791.1	PFAM: MscS Mechanosensitive ion channel; KEGG: ret:RHE_CH02151 mechanosensitive ion channel protein
YP_002975792.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_0439 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002975793.1	PFAM: alpha/beta hydrolase fold; KEGG: reh:H16_B0901 predicted hydrolase or acyltransferase
YP_002975794.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smd:Smed_5569 transcriptional regulator, LysR family
YP_002975795.1	PFAM: protein of unknown function DUF599; KEGG: pzu:PHZ_c2989 hypothetical protein
YP_002975796.1	KEGG: jan:Jann_2804 allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2
YP_002975797.1	PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: bid:Bind_3141 allophanate hydrolase subunit 1
YP_002975799.1	PFAM: LamB/YcsF family protein; KEGG: jan:Jann_2802 hypothetical protein
YP_002975801.1	PFAM: PAS fold-3 domain protein; KEGG: atc:AGR_pAT_501 hypothetical protein
YP_002975802.1	PFAM: UspA domain protein; KEGG: ret:RHE_PD00016 universal stress UspA protein
YP_002975803.1	KEGG: nha:Nham_1901 membrane protein
YP_002975804.1	KEGG: ret:RHE_CH02152 hypothetical protein
YP_002975805.1	KEGG: ret:RHE_CH02153 hypothetical protein; SNP /replace=A
YP_002975806.1	PFAM: Integral membrane protein TerC; KEGG: ret:RHE_CH02154 TerC family transporter
YP_002975807.1	PFAM: beta-lactamase; KEGG: ret:RHE_CH02155 metal-dependent hydrolase protein
YP_002975808.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: deoxyribonuclease protein ; K03424 Mg-dependent DNase
YP_002975809.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002975810.1	PFAM: protein of unknown function DUF81; KEGG: rec:RHECIAT_CH0002243 hypothetical conserved membrane protein
YP_002975811.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_002975812.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_002975813.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rec:RHECIAT_CH0002246 D-alanyl-D-alanine carboxypeptidase protein
YP_002975814.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ret:RHE_CH02162 rare lipoprotein A precursor protein
YP_002975816.1	PFAM: GYD family protein; KEGG: ret:RHE_CH03186 hypothetical protein
YP_002975817.1	KEGG: atc:AGR_C_3960 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002975818.1	KEGG: ret:RHE_CH01803 hypothetical protein
YP_002975820.1	PFAM: protein of unknown function DUF849; KEGG: mlo:mll1845 hypothetical protein
YP_002975822.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002252 transporter protein
YP_002975823.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0002253 probable transcriptional regulator protein, LysR family
YP_002975824.1	PFAM: PhnA protein; KEGG: rec:RHECIAT_CH0002254 alkilphosphonate uptake protein
YP_002975825.1	PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: ret:RHE_CH02168 transglutaminase-like protein
YP_002975826.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: rec:RHECIAT_CH0002256 transglutaminase-like protein
YP_002975828.1	PFAM: Entericidin EcnAB; KEGG: ret:RHE_CH02170 hypothetical protein
YP_002975831.1	PFAM: transglycosylase-associated protein; KEGG: rec:RHECIAT_CH0002258 hypothetical conserved membrane protein
YP_002975832.1	KEGG: rec:RHECIAT_CH0002259 hypothetical protein
YP_002975833.1	KEGG: rec:RHECIAT_CH0002260 peptidyl-prolyl cis-trans isomerase D signal peptide protein
YP_002975834.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002975835.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_002975836.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: moaC; molybdenum cofactor biosynthesis protein C ; K03637 molybdenum cofactor biosynthesis protein C
YP_002975837.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: rec:RHECIAT_CH0002264 molybdopterin biosynthesis protein
YP_002975839.1	PFAM: methyltransferase small; KEGG: ret:RHE_CH02178 SAM-dependent methyltransferease protein
YP_002975840.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pde:Pden_2843 GCN5-related N-acetyltransferase
YP_002975841.1	PFAM: DEAD/DEAH box helicase; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ret:RHE_CH02179 ATP-dependent RNA helicase protein
YP_002975842.1	PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH02180 adenylate cyclase protein
YP_002975843.1	PFAM: FecR protein; KEGG: ret:RHE_CH02181 hypothetical protein
YP_002975844.1	PFAM: citrate synthase; KEGG: rec:RHECIAT_CH0002269 citrate synthase protein
YP_002975845.1	forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle
YP_002975846.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mxa:MXAN_3391 Aha1 domain family protein
YP_002975847.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002975848.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rec:RHECIAT_CH0002272 probable protein-export translocase protein
YP_002975849.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002975850.1	KEGG: rec:RHECIAT_CH0002274 hypothetical protein
YP_002975851.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002975852.1	PFAM: acyltransferase; KEGG: bja:blr2157 hypothetical protein
YP_002975853.1	KEGG: rec:RHECIAT_CH0002276 hypothetical protein
YP_002975854.1	PFAM: protein of unknown function UPF0118; KEGG: ret:RHE_CH02189 permease protein
YP_002975855.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002278 probable acetyltransferase protein
YP_002975856.1	KEGG: ret:RHE_CH02191 hypothetical protein
YP_002975857.1	KEGG: rec:RHECIAT_CH0002280 hypothetical protein
YP_002975858.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_CH0002281 hypothetical protein
YP_002975859.1	PFAM: nitroreductase; KEGG: rec:RHECIAT_CH0002282 nitroreductase protein
YP_002975860.1	KEGG: rec:RHECIAT_CH0002283 hypothetical protein
YP_002975861.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_002975862.1	PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein
YP_002975863.1	PFAM: protein of unknown function DUF1697; KEGG: rec:RHECIAT_CH0002286 hypothetical protein
YP_002975864.1	PFAM: protein of unknown function DUF37; KEGG: rec:RHECIAT_CH0002287 hypothetical protein
YP_002975865.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: ret:RHE_CH02200 nitrogen fixation protein
YP_002975866.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_002975867.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_002975868.1	PFAM: Patatin; KEGG: rec:RHECIAT_CH0002291 phosphoesterase protein
YP_002975869.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: rec:RHECIAT_CH0002292 inosine-5'-monophosphate dehydrogenase protein
YP_002975870.1	PFAM: Rhomboid family protein; KEGG: rec:RHECIAT_CH0002293 peptidase protein
YP_002975871.1	PFAM: protein of unknown function DUF1457; KEGG: rec:RHECIAT_CH0002295 hypothetical protein
YP_002975872.1	PFAM: type IV pilus assembly PilZ; KEGG: rec:RHECIAT_CH0002296 hypothetical protein
YP_002975873.1	KEGG: ret:RHE_CH02208 proline iminopeptidase protein; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold
YP_002975874.1	PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rec:RHECIAT_CH0002298 transglutaminase-like cysteine peptidase protein
YP_002975875.1	KEGG: rec:RHECIAT_CH0002299 hypothetical protein
YP_002975876.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; beta-lactamase; Sporulation domain protein; KEGG: ret:RHE_CH02211 serine-type D-Ala-D-Ala carboxypeptidase protein
YP_002975877.1	KEGG: ret:RHE_CH02212 hypothetical protein
YP_002975878.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0002302 hypothetical protein
YP_002975879.1	KEGG: ret:RHE_CH02214 L-serine dehydratase protein; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_002975880.1	KEGG: sme:SMa2267 hypothetical protein
YP_002975881.1	PFAM: acyltransferase; KEGG: rec:RHECIAT_PA0000025 acyltransferase protein
YP_002975882.1	KEGG: sil:SPO3180 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase
YP_002975883.1	PFAM: protein of unknown function DUF599; KEGG: rec:RHECIAT_CH0002324 hypothetical conserved membrane protein
YP_002975884.1	PFAM: protein of unknown function DUF1624; KEGG: rec:RHECIAT_CH0002325 hypothetical conserved membrane protein
YP_002975885.1	PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rec:RHECIAT_CH0002326 probable transcriptional regulator protein, MerR family
YP_002975886.1	KEGG: ret:RHE_CH02218 magnesium transporter protein; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein
YP_002975887.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002975888.1	PFAM: transport-associated; KEGG: ret:RHE_CH02220 hypothetical protein
YP_002975889.1	KEGG: rec:RHECIAT_CH0002330 hypothetical protein
YP_002975890.1	KEGG: rec:RHECIAT_CH0002331 hypothetical protein
YP_002975891.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_002975892.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02224 permease protein
YP_002975893.1	KEGG: ret:RHE_CH02225 hypothetical protein
YP_002975894.1	PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: rec:RHECIAT_CH0002336 propionyl-CoA carboxylase protein, alpha subunit
YP_002975895.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02228 acetyltransferase protein
YP_002975896.1	PFAM: protein of unknown function DUF188; KEGG: ret:RHE_CH02229 hypothetical protein
YP_002975897.1	PFAM: small multidrug resistance protein; KEGG: ret:RHE_CH02230 chaperone-like transmembrane protein
YP_002975898.1	PFAM: DoxX family protein; KEGG: ret:RHE_CH02231 hypothetical protein
YP_002975899.1	PFAM: carboxyl transferase; KEGG: ret:RHE_CH02232 propionyl-CoA carboxylase beta chain protein
YP_002975900.1	KEGG: ret:RHE_CH02233 hypothetical protein
YP_002975901.1	PFAM: ATP12 ATPase; KEGG: ret:RHE_CH02234 hypothetical protein
YP_002975902.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0002344 phosphoglycolate phosphatase protein
YP_002975903.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: rec:RHECIAT_CH0002345 RNA-pseudouridine synthase protein, ribosomal large subunit C
YP_002975904.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_002975905.1	KEGG: ret:RHE_CH02238 hypothetical protein
YP_002975906.1	PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: rec:RHECIAT_CH0002348 hypothetical protein
YP_002975907.1	KEGG: rec:RHECIAT_CH0002349 hypothetical protein
YP_002975908.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_002975909.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_002975910.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_002975911.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gdj:Gdia_1453 short-chain dehydrogenase/reductase SDR
YP_002975912.1	PFAM: regulatory protein TetR; KEGG: gdj:Gdia_1452 transcriptional regulator, TetR family
YP_002975913.1	PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: rec:RHECIAT_CH0002353 cell-wall lytic enzyme
YP_002975914.1	KEGG: atc:AGR_L_213 hypothetical protein; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase
YP_002975915.1	PFAM: ferritin Dps family protein; KEGG: azc:AZC_4121 low temperature-induced protein
YP_002975916.1	PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ret:RHE_CH02245 flagellar basal body rod protein
YP_002975917.1	TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rec:RHECIAT_CH0002356 hypothetical protein
YP_002975918.1	TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: ret:RHE_CH02248 hypothetical protein
YP_002975919.1	TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002358 selenocysteine lyase protein
YP_002975920.1	TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: ret:RHE_CH02250 ABC transporter involved in Fe-S cluster assembly, permease protein
YP_002975921.1	KEGG: rec:RHECIAT_CH0002360 ABC transporter involved in Fe-S cluster assembly, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: AAA ATPase
YP_002975922.1	KEGG: rec:RHECIAT_CH0002361 hypothetical protein
YP_002975923.1	with SufCD activates cysteine desulfurase SufS
YP_002975924.1	PFAM: aminotransferase class V; KEGG: rec:RHECIAT_CH0002363 cysteine desulfurase protein (nitrogenase cofactor synthesis protein)
YP_002975925.1	KEGG: ret:RHE_CH02255 alpha/beta hydrolase
YP_002975926.1	PFAM: acyltransferase; KEGG: rec:RHECIAT_CH0002365 nodulation protein X (probable sugar acetylase)
YP_002975927.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002366 acetyltransferase protein
YP_002975928.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_002975929.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002975930.1	KEGG: ret:RHE_CH02259 hypothetical protein
YP_002975931.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rec:RHECIAT_CH0002370 maltose alpha-D-glucosyltransferase protein
YP_002975932.1	KEGG: rec:RHECIAT_CH0002371 hypothetical protein
YP_002975933.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ret:RHE_CH02262 bacterioferritin comigratory protein
YP_002975934.1	PFAM: protein of unknown function DUF455; KEGG: ret:RHE_CH02263 hypothetical protein
YP_002975935.1	PFAM: peptidase M23; KEGG: rec:RHECIAT_CH0002374 probable metalloendopeptidase protein
YP_002975936.1	PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ret:RHE_CH02265 ATP dependent RNA helicase protein
YP_002975937.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002376 hydrolase protein, MutT/NUDIX family
YP_002975938.1	PFAM: TfoX domain protein; KEGG: rec:RHECIAT_CH0002377 regulator of competence-specific genes protein, TfoX family
YP_002975939.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: ret:RHE_CH02268 4-hydroxyphenylacetate 3-monooxygenase small chain protein
YP_002975940.1	PFAM: Extracellular ligand-binding receptor; KEGG: ret:RHE_CH02269 amino acid ABC transporter, substrate-binding protein
YP_002975941.1	KEGG: ret:RHE_CH02270 D-ribulose-5 phosphate 3-epimerase protein; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase
YP_002975942.1	KEGG: ret:RHE_CH02271 hypothetical protein
YP_002975943.1	KEGG: rec:RHECIAT_CH0002382 hypothetical protein
YP_002975944.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002975945.1	KEGG: ret:RHE_PE00429 hypothetical protein
YP_002975946.1	KEGG: ret:RHE_PE00428 hypothetical protein
YP_002975947.1	PFAM: protein of unknown function DUF1452; KEGG: rec:RHECIAT_CH0002384 hypothetical conserved membrane protein
YP_002975948.1	KEGG: rec:RHECIAT_CH0002385 hypothetical conserved membrane protein
YP_002975949.1	PFAM: protein of unknown function DUF1234; KEGG: rec:RHECIAT_CH0002386 hypothetical protein
YP_002975950.1	KEGG: rec:RHECIAT_CH0002387 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein
YP_002975951.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002975952.1	With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway
YP_002975953.1	in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown
YP_002975954.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002975955.1	KEGG: ret:RHE_CH02282 hypothetical protein
YP_002975956.1	KEGG: ret:RHE_CH02283 hypothetical protein
YP_002975957.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0002394 probable transcriptional regulator protein, GntR family
YP_002975958.1	KEGG: ret:RHE_CH02285 hypothetical protein
YP_002975959.1	PFAM: protein of unknown function DUF521; protein of unknown function DUF126; KEGG: hypothetical protein
YP_002975960.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002975961.1	PFAM: BolA family protein; KEGG: ret:RHE_CH02287 stress-induced morphogen protein
YP_002975962.1	KEGG: rec:RHECIAT_CH0002398 hypothetical protein
YP_002975963.1	KEGG: smd:Smed_1507 hypothetical protein
YP_002975964.1	KEGG: reu:Reut_A2664 hypothetical protein
YP_002975965.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: ret:RHE_CH02304 glutaredoxin protein
YP_002975966.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02305 Bcr/CflA subfamily drug resistance transporter
YP_002975967.1	PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rec:RHECIAT_CH0002402 probable multidrug resistance transporter protein
YP_002975968.1	PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0002404 inositol monophosphatase protein
YP_002975969.1	PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0002405 inositol monophosphatase protein
YP_002975970.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_002975971.1	catalyzes the formation of glutamate from glutamine
YP_002975972.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002975973.1	SMART: AAA ATPase; KEGG: ret:RHE_CH02313 hypothetical protein
YP_002975975.1	PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce4003 major facilitator superfamily permease
YP_002975976.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_002975977.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ret:RHE_CH02315 tRNA/rRNA methyltransferase protein
YP_002975978.1	KEGG: rec:RHECIAT_CH0002412 hypothetical conserved membrane protein
YP_002975979.1	KEGG: rec:RHECIAT_CH0002413 hypothetical protein
YP_002975980.1	Converts isocitrate to alpha ketoglutarate
YP_002975981.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02319 acetyltransferase protein
YP_002975982.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH02320 glutathione S-transferase protein
YP_002975983.1	PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0002417 probable transcriptional regulator protein, AraC family
YP_002975984.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002975985.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_002975986.1	PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0002421 ribokinase protein
YP_002975987.1	PFAM: Indigoidine synthase A family protein; KEGG: ret:RHE_CH02325 hypothetical protein
YP_002975988.1	PFAM: Integrase catalytic region; KEGG: hne:HNE_3190 ISHne2, transposase
YP_002975989.1	KEGG: rec:RHECIAT_CH0002423 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein
YP_002975990.1	KEGG: rec:RHECIAT_CH0002424 hypothetical protein
YP_002975991.1	PFAM: protein of unknown function DUF1062; KEGG: ret:RHE_CH02328 hypothetical protein
YP_002975992.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: rec:RHECIAT_CH0002426 DnaK suppressor protein
YP_002975993.1	PFAM: phosphoglycerate mutase; KEGG: ret:RHE_CH02330 phosphohistidine phosphatase protein
YP_002975994.1	PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rec:RHECIAT_CH0002429 hypothetical protein
YP_002975995.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0002430 hypothetical conserved membrane protein
YP_002975996.1	KEGG: rec:RHECIAT_CH0002431 hypothetical protein
YP_002975997.1	KEGG: ret:RHE_CH02334 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinas E protein; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK
YP_002975998.1	TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: ret:RHE_CH02335 dihydroneopterin aldolase protein
YP_002975999.1	KEGG: ret:RHE_CH02336 dihydropteroate synthase protein; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_002976000.1	PFAM: protein of unknown function DUF922; KEGG: rec:RHECIAT_CH0002435 hypothetical protein
YP_002976001.1	PFAM: ferredoxin; KEGG: ret:RHE_CH02338 ferredoxin, 2Fe-2S FDII electron transport iron-sulfur protein
YP_002976002.1	PFAM: Hpt domain protein; KEGG: rec:RHECIAT_CH0002437 hypothetical protein
YP_002976003.1	KEGG: ret:RHE_CH02340 hypothetical protein
YP_002976004.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_CH02341 isochorismatase protein
YP_002976005.1	PFAM: tRNA synthetase class II (G H P and S); KEGG: tRNA synthetase class II (G H P and S) ; K01880 glycyl-tRNA synthetase
YP_002976006.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; beta-lactamase; KEGG: ret:RHE_CH02344 D-alanyl-D-alanine carboxypeptidase protein
YP_002976007.1	KEGG: rec:RHECIAT_CH0002442 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein
YP_002976008.1	PFAM: protein of unknown function DUF330; KEGG: ret:RHE_CH02346 ABC transporter protein
YP_002976009.1	PFAM: Mammalian cell entry related domain protein; KEGG: ret:RHE_CH02347 ABC transporter protein
YP_002976010.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002445 probable ABC transporter, ATP-binding protein
YP_002976011.1	PFAM: protein of unknown function DUF140; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rec:RHECIAT_CH0002446 probable ABC transporter, permease protein
YP_002976012.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rec:RHECIAT_CH0002447 racemase/isomerase protein
YP_002976013.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002448 3-phenylpropionic acid permease protein
YP_002976014.1	PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0002449 UDP-2,3-diacylglucosamine hydrolase protein
YP_002976015.1	PFAM: phosphoglycerate mutase; KEGG: ret:RHE_CH02353 phosphoglycerate mutase protein
YP_002976016.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rru:Rru_A1118 hydrophobe/amphiphile efflux-1 HAE1
YP_002976017.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A1117 secretion protein HlyD
YP_002976018.1	PFAM: regulatory protein TetR; KEGG: atc:AGR_C_4219 hypothetical protein
YP_002976019.1	PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: rec:RHECIAT_CH0002451 probable FAD-dependent oxidoreductase protein
YP_002976020.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cvi:CV_0982 transcription regulator protein
YP_002976021.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: npdG; NADPH-dependent F420 reductase ; K06988
YP_002976022.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_002976023.1	PFAM: ribonuclease H; KEGG: ret:RHE_CH02363 ribonuclease H protein
YP_002976025.1	KEGG: ret:RHE_CH02367 hypothetical protein
YP_002976026.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_2039 3-oxoacyl-[acyl-carrier protein] reductase
YP_002976027.1	KEGG: ret:RHE_CH02368 nitroreductase protein; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase
YP_002976028.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: atc:AGR_L_1733 hypothetical protein
YP_002976029.1	PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll5686 transmembrane efflux protein
YP_002976030.1	PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll8348 multidrug efflux protein
YP_002976032.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: atc:AGR_C_3503 methyl-accepting chemotaxis protein McpV
YP_002976033.1	KEGG: vco:VC0395_0102 hypothetical protein
YP_002976034.1	KEGG: rec:RHECIAT_CH0002355 hypothetical protein
YP_002976035.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_002976036.1	PFAM: WD40 domain protein beta Propeller; KEGG: ret:RHE_CH02370 periplasmic component of the Tol biopolymer transport system
YP_002976037.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002976038.1	PFAM: protein of unknown function DUF1003; KEGG: rec:RHECIAT_CH0002461 hypothetical conserved membrane protein
YP_002976039.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1105 hypothetical protein
YP_002976040.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH02373 hypothetical protein
YP_002976041.1	PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ret:RHE_CH02374 multidrug resistance ABC transporter, ATP-binding and permease protein
YP_002976042.1	KEGG: rec:RHECIAT_CH0002465 3-deoxy-7-phosphoheptulonate synthase protein, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II
YP_002976043.1	KEGG: ret:RHE_CH02376 hypothetical protein
YP_002976044.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_002976045.1	KEGG: rec:RHECIAT_CH0002468 hypothetical protein
YP_002976046.1	catalyzes the hydrolysis of acylphosphate
YP_002976047.1	KEGG: ret:RHE_CH02379 hypothetical protein
YP_002976048.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_002976049.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_002976050.1	PFAM: Integrase catalytic region; KEGG: hne:HNE_3190 ISHne2, transposase
YP_002976051.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding domain 1 protein; KEGG: rec:RHECIAT_CH0002473 hypothetical protein
YP_002976053.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_002976054.1	KEGG: rec:RHECIAT_CH0002476 autoaggregation protein (adhering protein)
YP_002976055.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: rec:RHECIAT_CH0002477 fumarate hydratase protein, class I
YP_002976056.1	KEGG: rec:RHECIAT_CH0002478 hypothetical protein
YP_002976057.1	KEGG: ret:RHE_CH02386 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002976058.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ret:RHE_CH02387 pyridoxine biosynthesis protein
YP_002976059.1	KEGG: rec:RHECIAT_CH0002481 hypothetical protein
YP_002976060.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0002482 probable transcriptional regulator protein, MarR family
YP_002976061.1	PFAM: low temperature requirement A; KEGG: rec:RHECIAT_CH0002483 hypothetical conserved membrane protein
YP_002976062.1	PFAM: protein of unknown function DUF971; KEGG: ret:RHE_CH02391 hypothetical protein
YP_002976063.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_002976064.1	PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002486 probable ubiquinone/menaquinone biosynthesis methyltransferase protein
YP_002976065.1	PFAM: periplasmic binding protein; KEGG: rec:RHECIAT_CH0002487 iron ABC transporter, substrate-binding protein
YP_002976066.1	PFAM: transport system permease protein; KEGG: rec:RHECIAT_CH0002488 iron ABC transporter, permease protein
YP_002976067.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002489 iron ABC transporter, ATP-binding protein
YP_002976068.1	PFAM: sugar-binding domain protein; KEGG: rec:RHECIAT_CH0002490 probable transcriptional regulator protein
YP_002976069.1	PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_CH02396 glycerol kinase protein
YP_002976070.1	PFAM: transketolase domain protein; transketolase central region; KEGG: rec:RHECIAT_CH0002492 transketolase protein, C-terminal subunit
YP_002976071.1	PFAM: transketolase domain protein; KEGG: atc:AGR_C_3490 probable transketolase
YP_002976072.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0002494 ribose ABC transporter, permease protein
YP_002976073.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0002495 ribose ABC transporter, substrate-binding protein
YP_002976074.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002496 ribose ABC transporter, ATP-binding protein
YP_002976075.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH02402 short chain dehydrogenase
YP_002976076.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH02403 short chain dehydrogenase protein
YP_002976077.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: atc:AGR_C_3478 hypothetical protein
YP_002976078.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH02404 short chain dehydrogenase
YP_002976079.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02405 hypothetical protein
YP_002976080.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: ret:RHE_CH02406 molybdopterin-guanine dinucleotide biosynthesis protein
YP_002976081.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rec:RHECIAT_CH0002503 molybdopterin-guanine dinucleotide biosynthesis protein
YP_002976082.1	KEGG: rec:RHECIAT_CH0002504 two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein
YP_002976083.1	KEGG: rec:RHECIAT_CH0002505 probable protein kinase protein; PFAM: KaiA binding; SMART: AAA ATPase
YP_002976084.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0002506 probable transcriptional regulator protein, LysR family
YP_002976085.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_CH0002507 hypothetical protein
YP_002976086.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002508 aldo-keto reductase protein
YP_002976087.1	KEGG: ret:RHE_CH02410 maleylpyruvate isomerase protein; TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain
YP_002976088.1	PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0002510 probable stress-induced OsmC-like protein
YP_002976089.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0002511 probable two-component sensor histidine kinase protein
YP_002976090.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0002512 probable two-component response regulator protein
YP_002976091.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH02414 epoxide hydrolase protein
YP_002976092.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome C biogenesis protein transmembrane region; KEGG: rec:RHECIAT_CH0002514 cytochrome C biogenesis protein
YP_002976093.1	KEGG: rec:RHECIAT_CH0002515 hydrolase protein
YP_002976094.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: sme:SM_b21299 transcriptional regulator, DeoR family protein
YP_002976095.1	KEGG: sme:SM_b21300 deoxyribose-phosphate aldolase protein; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
YP_002976096.1	PFAM: aldehyde Dehydrogenase; KEGG: sme:SM_b21301 putatively membrane-anchored aldehyde dehydrogenase protein
YP_002976097.1	PFAM: RbsD or FucU transport; KEGG: smd:Smed_4633 RbsD or FucU transport
YP_002976098.1	TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: rbsK; ribokinase ; K00852 ribokinase
YP_002976099.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_7824 ABC transporter permease protein
YP_002976100.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_7823 ABC transporter, permease protein
YP_002976101.1	PFAM: extracellular solute-binding protein family 1; KEGG: bbt:BBta_7822 ABC-type sugar transport system, periplasmic component
YP_002976102.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bbt:BBta_7821 ABC transporter ATP-binding protein
YP_002976103.1	PFAM: OmpA/MotB domain protein; KEGG: rec:RHECIAT_CH0002516 outer membrane protein, OmpA family
YP_002976104.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: rec:RHECIAT_CH0002517 probable amino acid ABC transporter, substrate-binding protein
YP_002976105.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02419 amino acid ABC transporter permease
YP_002976106.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002519 probable amino acid ABC transporter, permease protein
YP_002976107.1	PFAM: Usg family protein; KEGG: ret:RHE_CH02421 phosphoribosylanthranilate isomerase subunit Usg protein
YP_002976108.1	KEGG: ret:RHE_CH02422 hypothetical protein
YP_002976109.1	PFAM: methyltransferase type 12; methyltransferase type 11; TPR repeat-containing protein; tetratricopeptide TPR_2 repeat protein; KEGG: rec:RHECIAT_CH0002522 methyltransferase protein
YP_002976110.1	PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0002523 glutathione S-transferase protein
YP_002976111.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0002524 probable transcriptional regulator protein, ArsR family
YP_002976112.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002525 hypothetical protein
YP_002976113.1	PFAM: Domain of unknown function DUF1801; KEGG: ret:RHE_CH02427 hypothetical protein
YP_002976114.1	PFAM: Domain of unknown function DUF1801; KEGG: ret:RHE_CH02428 hypothetical protein
YP_002976115.1	KEGG: ret:RHE_CH02429 hypothetical protein
YP_002976116.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002528 hypothetical protein
YP_002976117.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0002529 probable transcriptional regulator protein, ArsR family
YP_002976118.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aliphatic sulphonate ABC transporter ; K02049 sulfonate/nitrate/taurine transport system ATP-binding protein
YP_002976119.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aliphatic sulphonate ABC transporter ; K02050 sulfonate/nitrate/taurine transport system permease protein
YP_002976120.1	PFAM: Luciferase-like monooxygenase; KEGG: ret:RHE_CH02432 alkanesulfonate monooxygenase protein
YP_002976121.1	KEGG: aliphatic sulfonate substrate binding component of   ABC transporter ; K02051 sulfonate/nitrate/taurine   transport system substrate-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3
YP_002976122.1	KEGG: rec:RHECIAT_CH0002530 hypothetical protein
YP_002976123.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; oxidoreductase domain protein; KEGG: ret:RHE_CH02433 3-hydroxyisobutyrate dehydrogenase protein
YP_002976124.1	KEGG: ret:RHE_CH02434 hypothetical protein
YP_002976125.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_1707 transcriptional regulator
YP_002976126.1	PFAM: porin; KEGG: rec:RHECIAT_CH0002537 porin outer membrane protein
YP_002976127.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0002539 probable transcriptional regulator protein, AsnC family
YP_002976128.1	KEGG: ret:RHE_CH02439 uracil-DNA glycosylase protein
YP_002976129.1	PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: rec:RHECIAT_CH0002541 succinoglycan biosynthesis protein
YP_002976130.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0002542 probable two-component sensor histidine kinase protein
YP_002976131.1	PFAM: diacylglycerol kinase; KEGG: rec:RHECIAT_CH0002543 diacylglycerol kinase protein
YP_002976132.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_002976133.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_002976134.1	PFAM: protein of unknown function DUF1289; KEGG: ret:RHE_CH02445 hypothetical protein
YP_002976135.1	KEGG: rec:RHECIAT_CH0002547 hypothetical protein
YP_002976136.1	KEGG: ret:RHE_CH02448 hypothetical protein
YP_002976137.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH02449 LysR family transcriptional regulator
YP_002976138.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0002552 probable short-chain dehydrogenase protein
YP_002976139.1	PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0002553 multidrug ABC transporter, permease protein
YP_002976140.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH02452 multidrug ABC transporter, ATP-binding protein
YP_002976142.1	PFAM: glycoside hydrolase family 43; KEGG: ret:RHE_CH02453 beta-xylosidase protein
YP_002976143.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002557 probable oxidoreductase protein
YP_002976144.1	PFAM: oxidoreductase domain protein; KEGG: rec:RHECIAT_CH0002558 probable oxidoreductase protein
YP_002976145.1	PFAM: xylose isomerase; KEGG: rec:RHECIAT_CH0002559 xylose isomerase domain protein
YP_002976146.1	KEGG: rec:RHECIAT_CH0002560 beta-mannosidase protein
YP_002976147.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002561 probable sugar ABC transporter, ATP-binding protein
YP_002976148.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter ; K02026 multiple sugar transport system permease protein
YP_002976149.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002563 probable sugar ABC transporter, permease protein
YP_002976150.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002564 probable sugar ABC transporter, substrate-binding protein
YP_002976151.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_CH0002565 probable transcriptional regulator protein, LacI family
YP_002976152.1	TIGRFAM: leucyl-tRNA synthetase; KEGG: bcy:Bcer98_3415 leucyl-tRNA synthetase
YP_002976153.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0002059 probable transcriptional regulator protein, LysR family
YP_002976154.1	KEGG: ret:RHE_CH02463 hypothetical protein
YP_002976155.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002976156.1	KEGG: ret:RHE_CH02465 hypothetical protein
YP_002976157.1	PFAM: methyltransferase type 12; KEGG: rec:RHECIAT_CH0002568 hypothetical protein
YP_002976158.1	PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase protein ; K03824 acetyltransferase
YP_002976159.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cak:Caul_3749 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002976160.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_002976161.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_002976162.1	SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH02469 AraC family transcriptional regulator
YP_002976163.1	KEGG: rec:RHECIAT_CH0002572 hypothetical protein
YP_002976164.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0002573 glyoxalase protein
YP_002976165.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; KEGG: rec:RHECIAT_CH0002574 hypothetical protein
YP_002976166.1	acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_002976167.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002576 probable alcohol dehydrogenase protein
YP_002976168.1	FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.
YP_002976169.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002976170.1	PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rec:RHECIAT_CH0002579 probable hydroxymyristoyl-[acyl-carrier-protein] dehydratase protein
YP_002976171.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_002976172.1	PFAM: regulatory protein Crp; cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: rec:RHECIAT_CH0002581 transcriptional regulator protein, Fnr/CRP family
YP_002976173.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0002582 hypothetical protein
YP_002976174.1	KEGG: rec:RHECIAT_CH0002583 hypothetical protein
YP_002976175.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_002976176.1	TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002585 cobalamin biosynthesis protein, pyridoxal-phosphate-dependent aminotransferase protein
YP_002976177.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_002976178.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ret:RHE_CH02484 uroporphyrin-III C-methyltransferase protein
YP_002976179.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ret:RHE_CH02485 inosine-uridine preferring nucleoside hydrolase protein
YP_002976180.1	KEGG: rec:RHECIAT_CH0002589 probable precorrin-3B C17-methyltransferase protein
YP_002976181.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_002976182.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_002976183.1	TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_CH0002593 cobalamin biosynthesis protein
YP_002976184.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_002976185.1	PFAM: Chloride channel core; KEGG: rec:RHECIAT_CH0002596 chloride channel protein
YP_002976186.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002597 probable adenylate cyclase protein
YP_002976187.1	PFAM: protein of unknown function DUF1127
YP_002976188.1	KEGG: pca:Pcar_1705 hypothetical protein
YP_002976189.1	KEGG: mlo:mll1853 hypothetical protein
YP_002976190.1	PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: nwsB; two-component response regulator protein (NodW mutant supressor protein)
YP_002976191.1	Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate
YP_002976192.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_002976193.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ret:RHE_CH02495 amino acid ABC transporter, substrate-binding protein
YP_002976194.1	KEGG: ret:RHE_CH02496 hypothetical protein
YP_002976195.1	PFAM: Entericidin EcnAB; KEGG: rec:RHECIAT_CH0002602 entericidin B signal peptide protein
YP_002976196.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0002603 probable transcriptional regulator protein, LysR family
YP_002976197.1	KEGG: rec:RHECIAT_CH0002604 hypothetical protein
YP_002976198.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0002605 probable amino acid efflux protein, LysE family
YP_002976199.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_002976200.1	KEGG: rec:RHECIAT_CH0002844 hypothetical protein
YP_002976201.1	activates RNA polymerase to cleave back-tracked RNA during elongational pausing
YP_002976202.1	KEGG: rec:RHECIAT_CH0002609 hypothetical protein
YP_002976203.1	KEGG: rec:RHECIAT_CH0002610 hypothetical protein
YP_002976204.1	KEGG: ret:RHE_CH02503 hypothetical protein
YP_002976205.1	KEGG: smd:Smed_3788 hypothetical protein
YP_002976206.1	KEGG: sme:SMa0690 hypothetical protein
YP_002976207.1	KEGG: smd:Smed_5667 transmembrane protein
YP_002976208.1	PFAM: secretion protein HlyD family protein; KEGG: smd:Smed_5668 secretion protein HlyD family protein
YP_002976209.1	KEGG: smd:Smed_4883 hypothetical protein
YP_002976210.1	KEGG: sme:SMa0601 hypothetical protein
YP_002976211.1	PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: smd:Smed_4880 protein of unknown function DUF900 hydrolase family protein
YP_002976212.1	PFAM: MscS Mechanosensitive ion channel; KEGG: smd:Smed_3001 MscS mechanosensitive ion channel
YP_002976213.1	KEGG: nha:Nham_2986 hypothetical protein
YP_002976214.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: nmn:NMCC_1265 hypothetical protein
YP_002976215.1	KEGG: rec:RHECIAT_CH0002614 hypothetical protein
YP_002976216.1	PFAM: type III restriction protein res subunit; DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase; KEGG: rec:RHECIAT_CH0002615 hypothetical protein
YP_002976217.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0002616 probable transcriptional regulator protein, AraC family
YP_002976218.1	KEGG: ret:RHE_CH02526 two-component response regulator protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver
YP_002976219.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0002618 two-component response regulator protein
YP_002976221.1	KEGG: ret:RHE_CH02529 hypothetical protein
YP_002976222.1	PFAM: regulatory protein TetR; KEGG: oan:Oant_0432 transcriptional regulator, TetR family
YP_002976223.1	PFAM: DinB family protein; KEGG: cvi:CV_0712 hypothetical protein
YP_002976224.1	KEGG: mrd:Mrad2831_1376 hypothetical protein
YP_002976225.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ret:RHE_CH02531 ArsR family transcriptional regulator
YP_002976226.1	PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: rec:RHECIAT_CH0002621 protein-tyrosine-phosphatase protein
YP_002976227.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rsq:Rsph17025_1405 GCN5-related N-acetyltransferase
YP_002976228.1	PFAM: major intrinsic protein; KEGG: mes:Meso_4200 major intrinsic protein
YP_002976229.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: ret:RHE_CH02534 arsenate reductase protein
YP_002976230.1	TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: atc:AGR_pAT_462 hypothetical protein
YP_002976231.1	PFAM: major facilitator superfamily MFS_1; KEGG: transporter
YP_002976232.1	KEGG: rec:RHECIAT_CH0002624 hypothetical protein
YP_002976233.1	PFAM: MscS Mechanosensitive ion channel; KEGG: rec:RHECIAT_CH0002625 probable mechanosensitive channel protein
YP_002976234.1	PFAM: protein of unknown function DUF924; KEGG: ret:RHE_CH02538 hypothetical protein
YP_002976235.1	PFAM: histidine kinase dimerisation/phosphoacceptor; response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: rec:RHECIAT_CH0002627 probable two-component sensor histidine kinase protein
YP_002976236.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002628 probable transporter protein
YP_002976237.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002629 probable sugar ABC transporter, substrate-binding protein
YP_002976238.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002630 probable sugar ABC transporter, permease protein
YP_002976239.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002631 probable sugar ABC transporter, permease protein
YP_002976240.1	KEGG: rec:RHECIAT_CH0002632 hypothetical protein
YP_002976241.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002633 probable sugar ABC transporter, ATP-binding protein
YP_002976242.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002634 probable sugar ABC transporter, ATP-binding protein
YP_002976243.1	PFAM: Dak kinase; Dak phosphatase; KEGG: rec:RHECIAT_CH0002635 dihydroxyacetone kinase protein
YP_002976244.1	TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: rec:RHECIAT_CH0002636 probable PTS-dependent dihydroxyacetone kinase protein, ADP-binding subunit
YP_002976245.1	TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component; KEGG: rec:RHECIAT_CH0002637 probable PTS-dependent dihydroxyacetone kinase protein, phosphotransferase subunit
YP_002976246.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: rec:RHECIAT_CH0002638 probable protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of the phosphotransferase system)
YP_002976247.1	PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: rec:RHECIAT_CH0002639 phosphoenolpyruvate--protein phosphotransferase protein (enzyme I of the phosphotransferase system)
YP_002976248.1	KEGG: rec:RHECIAT_CH0002640 hypothetical protein
YP_002976249.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_002976250.1	KEGG: rec:RHECIAT_CH0002642 hypothetical protein
YP_002976251.1	PFAM: acetyl xylan esterase; KEGG: rec:RHECIAT_CH0002643 probable deacetylase protein
YP_002976252.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pfl:PFL_3429 quinone family NAD(P)H dehydrogenase
YP_002976253.1	PFAM: regulatory protein TetR; KEGG: pfo:Pfl01_3535 TetR family transcriptional regulator
YP_002976254.1	PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0002644 probable hydrolase protein
YP_002976255.1	KEGG: msl:Msil_2190 hypothetical protein
YP_002976256.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bja:blr1279 transcriptional regulatory protein
YP_002976257.1	KEGG: rec:RHECIAT_CH0002645 hypothetical protein
YP_002976258.1	PFAM: O-methyltransferase family 3; KEGG: methyltransferase protein
YP_002976259.1	PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: azc:AZC_3551 siderophore-interacting protein
YP_002976260.1	PFAM: FAD dependent oxidoreductase; KEGG: rpi:Rpic_2467 D-amino-acid dehydrogenase
YP_002976261.1	PFAM: peptidase C26; endoribonuclease L-PSP; glutamine amidotransferase class-I; KEGG: acr:Acry_1477 peptidase C26
YP_002976262.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1388 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_002976263.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1389 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_002976264.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: pol:Bpro_1390 ABC transporter
YP_002976265.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pol:Bpro_1391 extracellular solute-binding protein, family 3
YP_002976266.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_4230 transcriptional regulator, AraC family
YP_002976267.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0002648 probable transcriptional regulator protein, MarR family
YP_002976268.1	PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: smd:Smed_5519 epoxide hydrolase domain protein
YP_002976269.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002649 NTP pyrophosphohydrolase protein, MutT/NUDIX family
YP_002976270.1	KEGG: rec:RHECIAT_CH0002650 adenylate cyclase protein
YP_002976271.1	PFAM: OsmC family protein; KEGG: ret:RHE_CH02544 organic hydroperoxide resistance protein
YP_002976272.1	PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: methyltransferase protein
YP_002976273.1	KEGG: rec:RHECIAT_CH0002653 hypothetical protein
YP_002976274.1	PFAM: Extensin family protein; KEGG: rec:RHECIAT_CH0002654 hypothetical protein
YP_002976275.1	PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0002655 methyl-accepting chemotaxis protein
YP_002976276.1	PFAM: thioesterase superfamily protein; KEGG: ret:RHE_CH02548 acyl-CoA hydrolase protein
YP_002976277.1	KEGG: ret:RHE_CH02549 hypothetical protein
YP_002976278.1	KEGG: hypothetical protein
YP_002976279.1	KEGG: hypothetical protein
YP_002976280.1	PFAM: carboxymuconolactone decarboxylase; KEGG: ypm:YP_1846 decarboxylase
YP_002976281.1	KEGG: exported protein
YP_002976282.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator protein
YP_002976283.1	PFAM: aldo/keto reductase; KEGG: oxidoreductase protein
YP_002976284.1	PFAM: protein of unknown function DUF1501; KEGG: rec:RHECIAT_CH0002658 hypothetical protein
YP_002976285.1	PFAM: hypothetical protein; KEGG: ret:RHE_CH02551 hypothetical protein
YP_002976286.1	PFAM: protein of unknown function DUF486; KEGG: rec:RHECIAT_CH0002660 hypothetical protein
YP_002976287.1	PFAM: RDD domain containing protein
YP_002976288.1	PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: transporter ; K08178 MFS transporter, SHS family, lactate transporter
YP_002976289.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002661 probable SAM-dependent methyltransferase protein
YP_002976290.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: xac:XAC0581 AraC family transcriptional regulator
YP_002976291.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bja:blr4790 oxidoreductase
YP_002976292.1	PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_CH0002662 hypothetical conserved membrane protein
YP_002976293.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0002663 probable transcriptional regulator protein, LysR family
YP_002976294.1	PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: sulfate permease
YP_002976295.1	KEGG: rec:RHECIAT_CH0002664 hypothetical protein
YP_002976296.1	LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment
YP_002976297.1	KEGG: pau:PA14_46540 hypothetical protein
YP_002976298.1	PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rec:RHECIAT_CH0002667 hypothetical protein
YP_002976299.1	PFAM: Ankyrin; SMART: Ankyrin; KEGG: ankyrin repeat protein
YP_002976300.1	KEGG: hypothetical protein
YP_002976301.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: tetratricopeptide domain protein; KEGG: adenylate cyclase protein; SNP /replace=T
YP_002976302.1	PFAM: Rhomboid family protein; KEGG: rec:RHECIAT_CH0002672 hypothetical protein
YP_002976303.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002668 probable adenylate cyclase protein
YP_002976304.1	KEGG: rec:RHECIAT_CH0002671 hypothetical protein
YP_002976305.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH03835 hypothetical protein
YP_002976307.1	PFAM: glycoside hydrolase 15-related; KEGG: pst:PSPTO_3119 glycosy hydrolase family protein
YP_002976308.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002976309.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02565 acetyltransferase protein
YP_002976310.1	PFAM: Hemolysin-type calcium-binding region; Cadherin; SMART: Cadherin; KEGG: rec:RHECIAT_PC0000856 hemolysin-type calcium-binding protein
YP_002976311.1	PFAM: Cadherin; Hemolysin-type calcium-binding region; SMART: Cadherin; KEGG: rec:RHECIAT_PC0000856 hemolysin-type calcium-binding protein
YP_002976312.1	KEGG: rec:RHECIAT_CH0002678 hypothetical protein
YP_002976313.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0002680 cold shock protein
YP_002976314.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: rec:RHECIAT_CH0002682 tRNA-dihydrouridine synthase protein
YP_002976315.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: ret:RHE_CH02570 serine protease HtrA/DegQ family protein
YP_002976316.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH02571 chloride peroxidase protein
YP_002976317.1	KEGG: rec:RHECIAT_CH0002685 hypothetical protein
YP_002976318.1	KEGG: rec:RHECIAT_CH0002686 hypothetical protein
YP_002976319.1	PFAM: Haemolysin-type calcium binding domain protein; Hemolysin-type calcium-binding region; KEGG: mlo:mll1028 rhizobiocin RzcA
YP_002976320.1	PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0002688 hypothetical protein
YP_002976322.1	PFAM: BA14K family protein; KEGG: ret:RHE_CH02573 hypothetical protein
YP_002976323.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002689 hypothetical protein
YP_002976324.1	KEGG: rec:RHECIAT_CH0002690 hypothetical protein
YP_002976325.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH02576 two-component sensor histidine kinase protein
YP_002976326.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ret:RHE_CH02577 two-component response regulator protein
YP_002976328.1	PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_CH02065 oxidoreductase protein
YP_002976329.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH01150 ABC transporter, ATP-binding protein
YP_002976330.1	PFAM: protein of unknown function DUF990; KEGG: ret:RHE_CH01149 transporter, permease protein
YP_002976331.1	PFAM: protein of unknown function DUF990; KEGG: ret:RHE_CH01148 transporter, permease protein
YP_002976332.1	PFAM: helix-turn-helix HxlR type; KEGG: ret:RHE_CH02578 hypothetical protein
YP_002976333.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_CH0002695 probable dihydrofolate reductase protein
YP_002976334.1	KEGG: rec:RHECIAT_CH0002698 hypothetical protein
YP_002976335.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0002699 probable transcriptional regulator protein, TetR family
YP_002976336.1	PFAM: O-methyltransferase family 3; KEGG: rec:RHECIAT_CH0002700 methyltransferase protein
YP_002976337.1	PFAM: regulatory protein TetR; KEGG: rpb:RPB_4514 TetR family transcriptional regulator
YP_002976338.1	PFAM: aldo/keto reductase; KEGG: mms:mma_0249 hypothetical protein
YP_002976339.1	PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bbt:BBta_2718 transcriptional regulator
YP_002976340.1	KEGG: rec:RHECIAT_CH0002701 hypothetical protein
YP_002976341.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mlr1973 glycine cleavage system transcription activator
YP_002976342.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nha:Nham_3519 3-demethylubiquinone-9 3-methyltransferase
YP_002976343.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: acp:A2cp1_3326 short-chain dehydrogenase/reductase SDR
YP_002976344.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mxa:MXAN_6486 transcriptional regulator, MarR family
YP_002976345.1	KEGG: ade:Adeh_3528 hypothetical protein
YP_002976346.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0002707 probable transcriptional regulator protein, AsnC family
YP_002976347.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_002976349.1	PFAM: regulatory protein TetR; KEGG: bra:BRADO2966 TetR family transcriptional regulator
YP_002976350.1	TIGRFAM: methyltransferase; PFAM: O-methyltransferase domain protein; KEGG: bra:BRADO2967 hypothetical protein
YP_002976351.1	KEGG: sil:SPO0922 hypothetical protein
YP_002976352.1	KEGG: rec:RHECIAT_CH0002709 hypothetical protein
YP_002976354.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sucrose ABC transporter
YP_002976355.1	KEGG: pol:Bpro_1646 hypothetical protein
YP_002976356.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sme:SMc00283 transcription regulator protein
YP_002976357.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0002712 hypothetical protein
YP_002976358.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rec:RHECIAT_CH0002713 3-demethylubiquinone-9 3-O-methyltransferase protein
YP_002976359.1	PFAM: phosphoglycerate mutase; KEGG: rec:RHECIAT_PC0000521 phosphoglycerate mutase protein
YP_002976360.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: amidohydrolase
YP_002976361.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: glyoxalase/bleomycin resistance protein/dioxygenase
YP_002976362.1	KEGG: rec:RHECIAT_CH0002715 hypothetical protein
YP_002976363.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_002976364.1	PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rec:RHECIAT_CH0002718 probable ornithine cyclodeaminase protein
YP_002976365.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02595 acetyltransferase protein
YP_002976366.1	PFAM: pyridoxal-dependent decarboxylase; KEGG: ret:RHE_CH02599 pyridoxal-dependent amino acid decarboxylase protein
YP_002976367.1	KEGG: smt:Smal_3946 phosphatase
YP_002976368.1	PFAM: GCN5-related N-acetyltransferase; KEGG: afe:Lferr_1671 GCN5-related N-acetyltransferase
YP_002976369.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rpt:Rpal_1805 methyltransferase type 11
YP_002976370.1	KEGG: ret:RHE_CH02601 hypothetical protein
YP_002976371.1	PFAM: major facilitator superfamily MFS_1; KEGG: lch:Lcho_4332 major facilitator transporter
YP_002976372.1	PFAM: K potassium transporter; KEGG: rec:RHECIAT_CH0002728 potassium transporter protein
YP_002976373.1	TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: ret:RHE_CH02602 Na+/H+ antiporter protein
YP_002976374.1	PFAM: intradiol ring-cleavage dioxygenase; KEGG: rec:RHECIAT_CH0002729 protocatechuate 3,4-dioxygenase protein, beta chain
YP_002976375.1	PFAM: oxidoreductase molybdopterin binding; KEGG: rec:RHECIAT_PC0000046 molybdopterin-binding oxidoreductase protein
YP_002976376.1	PFAM: cytochrome B561; KEGG: rec:RHECIAT_PC0000045 transmembrane cytochrome b-type protein
YP_002976377.1	TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: rec:RHECIAT_PC0000044 hypothetical protein
YP_002976378.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_PC0000043 RNA polymerase sigma factor protein, ECF family
YP_002976379.1	PFAM: protein of unknown function DUF1109; KEGG: rec:RHECIAT_PC0000042 hypothetical protein
YP_002976380.1	KEGG: rec:RHECIAT_CH0002730 nodulation protein
YP_002976381.1	SMART: carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; KEGG: rec:RHECIAT_CH0002731 polysaccharidase protein
YP_002976382.1	SMART: Parallel beta-helix repeat; KEGG: ret:RHE_CH02606 polysaccharidase protein
YP_002976383.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mll8218 hypothetical protein
YP_002976384.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: transcriptional regulator protein
YP_002976385.1	PFAM: Limonene-12-epoxide hydrolase; protein of unknown function DUF1486; KEGG: eca:ECA1588 hypothetical protein
YP_002976386.1	PFAM: NmrA family protein; TrkA-N domain protein; KEGG: hypothetical protein
YP_002976387.1	PFAM: protein of unknown function DUF214; KEGG: ret:RHE_CH02607 hypothetical protein
YP_002976388.1	PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0002737 membrane transporter protein
YP_002976389.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002738 ABC transporter, ATP-binding protein
YP_002976390.1	PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH02610 hypothetical protein
YP_002976391.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0002740 probable transcriptional regulator protein, AraC family
YP_002976392.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH02699 mRNA-binding protein
YP_002976394.1	KEGG: cvi:CV_1450 hypothetical protein
YP_002976395.1	KEGG: hypothetical protein
YP_002976396.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: oxygenase (tetracycline 6-hydroxylase) protein
YP_002976397.1	KEGG: rec:RHECIAT_CH0002742 hypothetical conserved membrane protein
YP_002976398.1	PFAM: cytochrome C oxidase subunit III; KEGG: rec:RHECIAT_CH0002743 cytochrome C oxidase protein, subunit III
YP_002976399.1	PFAM: cytochrome C oxidase subunit III; KEGG: rec:RHECIAT_CH0002744 cytochrome C oxidase protein, subunit III
YP_002976400.1	KEGG: rec:RHECIAT_CH0002745 cytochrome C oxidase protein, subunit I; TIGRFAM: cytochrome C oxidase, subunit I; PFAM: cytochrome C oxidase subunit I
YP_002976401.1	PFAM: cytochrome C oxidase subunit II; KEGG: rec:RHECIAT_CH0002746 cytochrome C oxidase protein, subunit II
YP_002976402.1	PFAM: cytochrome C class I; KEGG: rec:RHECIAT_CH0002747 probable cytochrome C protein
YP_002976403.1	PFAM: metal-dependent protein hydrolase; KEGG: rec:RHECIAT_CH0002748 hydrolase protein
YP_002976404.1	KEGG: ret:RHE_CH00957 hypothetical protein
YP_002976405.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mpo:Mpop_4222 ABC transporter
YP_002976406.1	PFAM: transport system permease protein; KEGG: mpo:Mpop_4223 transport system permease protein
YP_002976407.1	PFAM: periplasmic binding protein; KEGG: oan:Oant_3916 periplasmic binding protein
YP_002976408.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: swi:Swit_4667 prevent-host-death family protein
YP_002976409.1	PFAM: PilT protein domain protein; KEGG: oan:Oant_4706 PilT protein domain protein
YP_002976410.1	PFAM: protein of unknown function DUF442; beta-lactamase; KEGG: ret:RHE_CH02621 metallo-beta-lactamase family protein
YP_002976411.1	PFAM: DsrE family protein; KEGG: mpt:Mpe_A1006 uncharacterized protein involved in oxidation of intracellular sulfur
YP_002976412.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mpt:Mpe_A1005 AraC family transcriptional regulator
YP_002976413.1	KEGG: mrd:Mrad2831_4235 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein
YP_002976414.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sme:SMa0114 two-component response regulator
YP_002976415.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PE00168 hypothetical protein
YP_002976416.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lactoylglutathione lyase protein
YP_002976417.1	KEGG: sme:SMc01535 hypothetical protein
YP_002976418.1	PFAM: aldo/keto reductase; KEGG: bja:bll4597 aldo-keto reductase
YP_002976419.1	KEGG: rec:RHECIAT_CH0002752 hypothetical protein
YP_002976420.1	KEGG: hypothetical protein
YP_002976421.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: phoP; two component response regulator
YP_002976422.1	PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: phoQ; two component sensor kinase
YP_002976424.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002976425.1	KEGG: ret:RHE_PF00327 hypothetical protein
YP_002976426.1	TIGRFAM: outer membrane adhesin like proteiin; KEGG: rec:RHECIAT_CH0002754 fusion protein: autoaggregation protein and hypothetical conserved protein
YP_002976427.1	KEGG: ret:RHE_PE00429 hypothetical protein
YP_002976428.1	KEGG: ret:RHE_PE00429 hypothetical protein
YP_002976429.1	KEGG: rec:RHECIAT_CH0000572 hypothetical protein
YP_002976430.1	SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0002756 transcriptional regulator protein
YP_002976431.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0002757 polysaccharide synthesis protein (nucleoside-diphosphate-sugar epimerase)
YP_002976432.1	KEGG: ret:RHE_CH02629 hypothetical protein
YP_002976433.1	KEGG: ret:RHE_CH02630 hypothetical protein
YP_002976434.1	KEGG: rec:RHECIAT_CH0002759 hypothetical protein
YP_002976435.1	KEGG: rec:RHECIAT_CH0002760 hypothetical protein
YP_002976436.1	KEGG: mpo:Mpop_1272 hypothetical protein
YP_002976437.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_CH02636 hypothetical protein
YP_002976438.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH02637 hypothetical protein
YP_002976439.1	PFAM: ThiJ/PfpI domain protein; KEGG: ret:RHE_CH02638 intracellular protease/amidase protein
YP_002976440.1	KEGG: mxa:MXAN_2139 hypothetical protein
YP_002976441.1	PFAM: regulatory protein TetR; KEGG: jan:Jann_2416 TetR family transcriptional regulator
YP_002976442.1	KEGG: ret:RHE_CH02664 hypothetical protein
YP_002976443.1	N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid
YP_002976444.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0001023 probable transcriptional regulator protein, LysR family
YP_002976445.1	KEGG: rec:RHECIAT_CH0002773 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002976446.1	KEGG: ret:RHE_CH02646 hypothetical protein
YP_002976447.1	PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002775 probable menaquinone biosynthesis methyltransferase protein
YP_002976448.1	PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; Cache domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0002776 transcriptional regulator protein
YP_002976449.1	KEGG: rec:RHECIAT_CH0002777 hypothetical protein
YP_002976450.1	KEGG: ret:RHE_CH02650 hypothetical protein
YP_002976451.1	KEGG: ret:RHE_CH02652 hypothetical protein
YP_002976452.1	PFAM: Glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; beta-galactosidase domain protein; KEGG: lacZ1; beta-D-galactosidase protein
YP_002976453.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sugar ABC transporter
YP_002976454.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002795 probable sugar ABC transporter, permease protein
YP_002976455.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02659 sugar ABC transporter, permease protein
YP_002976456.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002797 probable sugar ABC transporter, substrate-binding protein
YP_002976457.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0002798 probable transcriptional regulator protein, ROK family
YP_002976458.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_CH02663 hypothetical protein
YP_002976459.1	PFAM: conserved hypothetical protein; KEGG: dvm:DvMF_1885 hypothetical protein
YP_002976460.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_5175 NAD(P)H dehydrogenase (quinone)
YP_002976461.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: eba:ebA6753 hypothetical protein
YP_002976462.1	PFAM: small multidrug resistance protein; KEGG: reu:Reut_A2608 small multidrug resistance protein
YP_002976464.1	SMART: exonuclease; KEGG: hypothetical protein
YP_002976465.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02665 transporter, permease protein
YP_002976466.1	PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0002801 transcriptional regulator protein, GntR family
YP_002976467.1	PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hne:HNE_3446 ISHne3, transposase
YP_002976468.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0002803 two-component response regulator protein
YP_002976469.1	PFAM: CHASE4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH02668 two-component sensor histidine kinase protein
YP_002976470.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002805 acetyltransferase protein
YP_002976472.1	PFAM: aryldialkylphosphatase; KEGG: vei:Veis_1477 aryldialkylphosphatase
YP_002976473.1	KEGG: rec:RHECIAT_CH0002806 hypothetical protein
YP_002976474.1	KEGG: ret:RHE_CH02671 hypothetical protein
YP_002976475.1	PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rec:RHECIAT_CH0002808 hypothetical protein
YP_002976476.1	KEGG: rec:RHECIAT_CH0002809 hypothetical protein
YP_002976477.1	PFAM: metallophosphoesterase; KEGG: sme:SM_b21213 serinethreonine protein phosphatase
YP_002976478.1	KEGG: rsh:Rsph17029_3222 hypothetical protein
YP_002976479.1	PFAM: Luciferase-like monooxygenase; KEGG: ret:RHE_CH02675 alkanal monooxygenase-like protein
YP_002976480.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH02597 AraC family transcriptional regulator
YP_002976481.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: rec:RHECIAT_CH0002722 dioxygenase protein
YP_002976482.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0002813 probable transcriptional regulator protein, LysR family
YP_002976483.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02677 efflux transporter protein
YP_002976484.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ret:RHE_CH02678 ArsR family transcriptional regulator; SNP /replace=T
YP_002976485.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002821 probable adenylate cyclase protein
YP_002976486.1	KEGG: rec:RHECIAT_CH0002822 hypothetical protein
YP_002976487.1	KEGG: ret:RHE_CH02686 hypothetical protein
YP_002976488.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002824 hypothetical protein
YP_002976489.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002976490.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_A4032 short-chain dehydrogenase/reductase SDR
YP_002976491.1	PFAM: alpha/beta hydrolase fold; KEGG: mno:Mnod_1454 alpha/beta hydrolase
YP_002976492.1	PFAM: protein of unknown function DUF1211; KEGG: cti:RALTA_B1737 conserved hypothetical protein; membrane; DUF1211
YP_002976493.1	KEGG: bpy:Bphyt_7175 hypothetical protein
YP_002976494.1	PFAM: protein of unknown function DUF1470; KEGG: bja:bll6575 hypothetical protein
YP_002976495.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0002826 glyoxalase protein
YP_002976496.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: atc:AGR_L_3463 hypothetical protein
YP_002976497.1	PFAM: beta-lactamase; KEGG: atc:AGR_L_3464 AmpC cephalosporinase precursor protein ACC-1b
YP_002976498.1	PFAM: protein of unknown function DUF1194; KEGG: rec:RHECIAT_CH0002827 hypothetical protein
YP_002976499.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH02691 LysR family transcriptional regulator
YP_002976500.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0002829 3-oxoacyl-[acyl-carrier-protein] reductase protein
YP_002976501.1	PFAM: endoribonuclease L-PSP; KEGG: rec:RHECIAT_CH0002830 translation initiation inhibitor protein
YP_002976502.1	KEGG: rec:RHECIAT_CH0002831 hypothetical protein
YP_002976503.1	PFAM: FecR protein; TPR repeat-containing protein; SMART: tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0002832 exported protein, TonB-dependent receptor
YP_002976504.1	PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH02696 adenylate cyclase protein
YP_002976505.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sme:SM_b20715 transcriptional regulator, LysR family protein
YP_002976506.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: sme:SM_b20716 hypothetical protein
YP_002976507.1	KEGG: ret:RHE_CH02700 nucleotidyltransferase protein
YP_002976508.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ret:RHE_CH02701 fumarylpyruvate hydrolase protein; SNP /replace=C
YP_002976509.1	KEGG: ret:RHE_CH02702 acetyltransferase protein
YP_002976510.1	PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hne:HNE_3446 ISHne3, transposase
YP_002976511.1	PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: rec:RHECIAT_CH0002840 isoprenylcysteine methyltransferase protein
YP_002976512.1	KEGG: ret:RHE_CH02704 hypothetical protein
YP_002976513.1	KEGG: ret:RHE_CH02705 hypothetical protein
YP_002976514.1	PFAM: protein of unknown function DUF1486; KEGG: ret:RHE_CH02706 hypothetical protein
YP_002976515.1	PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: ret:RHE_CH02707 hypothetical protein
YP_002976516.1	KEGG: rec:RHECIAT_CH0002843 hypothetical protein
YP_002976517.1	KEGG: rec:RHECIAT_CH0002845 zinc uptake transcriptional regulator protein, Fur family
YP_002976518.1	PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0002846 zinc uptake ABC transporter, permease protein
YP_002976519.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002847 zinc uptake ABC transporter, ATP-binding protein
YP_002976520.1	PFAM: periplasmic solute binding protein; KEGG: rec:RHECIAT_CH0002848 zinc uptake ABC transporter, substrate-binding protein
YP_002976521.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_CH0002849 probable cobalamin biosynthesis protein
YP_002976522.1	KEGG: rec:RHECIAT_CH0002850 hypothetical protein
YP_002976523.1	KEGG: rec:RHECIAT_CH0002851 hypothetical protein
YP_002976524.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0002853 glyoxalase/bleomycin resistance-like protein
YP_002976525.1	PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: rec:RHECIAT_CH0002854 probable hemolysin protein
YP_002976526.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rec:RHECIAT_CH0002855 chromate transporter protein
YP_002976527.1	SMART: Rhodanese domain protein; KEGG: ret:RHE_CH02717 superoxide dismutase SodM-like protein
YP_002976528.1	KEGG: rec:RHECIAT_CH0002857 hypothetical protein
YP_002976529.1	KEGG: ret:RHE_CH02718 hypothetical protein
YP_002976531.1	KEGG: rec:RHECIAT_CH0002859 hypothetical protein
YP_002976532.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: rec:RHECIAT_CH0002863 phenazine antibiotic biosynthesis protein
YP_002976533.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002864 NTP pyrophosphohydrolase protein, MuT/NUDIX family
YP_002976534.1	PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0002865 endonuclease/exonuclease/phosphatase family protein
YP_002976535.1	KEGG: hypothetical protein
YP_002976536.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002866 iron(III) ABC transporter, ATP-binding protein
YP_002976537.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02724 iron(III) ABC transporter, permease protein
YP_002976538.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002868 iron(III) ABC transporter, substrate-binding protein; SNP /replace=T
YP_002976539.1	PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0002869 hydrolase protein
YP_002976540.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_CH02727 MarR family transcriptional regulator
YP_002976541.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_CH02728 oxidoreductase protein
YP_002976542.1	PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002872 probable aminotransferase protein
YP_002976543.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002976544.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: hypothetical protein
YP_002976545.1	PFAM: PilT protein domain protein; KEGG: hypothetical protein
YP_002976546.1	TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: ret:RHE_CH02731 hypothetical protein
YP_002976547.1	PFAM: plasmid stabilization system; KEGG: ret:RHE_CH02732 hypothetical protein
YP_002976548.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002875 SAM-dependent methyltransferase protein
YP_002976549.1	KEGG: hypothetical protein
YP_002976550.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002976551.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0002885 probable transcriptional regulator protein, TetR family
YP_002976552.1	KEGG: rec:RHECIAT_CH0002886 hypothetical protein
YP_002976553.1	KEGG: bmn:BMA10247_A2120 hypothetical protein
YP_002976554.1	KEGG: rec:RHECIAT_CH0002895 hypothetical protein
YP_002976555.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH02756 glycosyltransferase
YP_002976556.1	PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH02757 AraC family transcriptional regulator
YP_002976557.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_CH02758 alcohol dehydrogenase (NADP+) protein
YP_002976558.1	TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor G domain IV; KEGG: rec:RHECIAT_CH0002899 probable tetracycline resistance protein
YP_002976559.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0002900 NADH dehydrogenase protein
YP_002976560.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0002903 probable transcriptional regulator protein, AsnC family
YP_002976561.1	TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: ret:RHE_CH02763 aspartate racemase protein
YP_002976562.1	PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0002905 transcriptional regulator protein
YP_002976563.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH02765 TetR family transcriptional regulator
YP_002976564.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02766 antibiotic resistance permease protein
YP_002976565.1	KEGG: met:M446_4000 hypothetical protein
YP_002976566.1	PFAM: helix-turn-helix HxlR type; KEGG: ret:RHE_CH02767 transcriptional regulator protein
YP_002976567.1	PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0002909 hypothetical protein
YP_002976568.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_002976569.1	PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; regulatory protein LuxR; SMART: regulatory protein MerR; regulatory protein LuxR; KEGG: rec:RHECIAT_CH0002912 probable transcriptional regulator protein
YP_002976570.1	KEGG: rec:RHECIAT_CH0002913 exodeoxyribonuclease V protein, alpha subunit
YP_002976571.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0002914 probable transcriptional regulator protein, LysR family
YP_002976572.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: ret:RHE_CH02773 carboxymuconolactone decarboxylase protein
YP_002976573.1	PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH02774 hypothetical protein
YP_002976574.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_CH02775 hypothetical protein
YP_002976575.1	PFAM: MscS Mechanosensitive ion channel; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: ret:RHE_CH02776 mechanosensitive ion channel protein
YP_002976576.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ret:RHE_CH02777 transcriptional regulator protein
YP_002976577.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: smd:Smed_5709 transcriptional regulator, MarR family
YP_002976578.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: smd:Smed_5708 cupin 2 conserved barrel domain protein
YP_002976579.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr2408 hypothetical protein
YP_002976580.1	PFAM: Secreted repeat of unknown function; KEGG: rec:RHECIAT_CH0002919 lipoprotein protein
YP_002976581.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ret:RHE_CH02779 RNA polymerase sigma factor protein (sigma-24)
YP_002976582.1	KEGG: ret:RHE_CH02780 hypothetical protein
YP_002976583.1	KEGG: rec:RHECIAT_CH0002922 hypothetical protein
YP_002976584.1	PFAM: nitrile hydratase beta subunit; KEGG: rec:RHECIAT_CH0002923 nitrile hydratase protein, beta subunit
YP_002976585.1	KEGG: smd:Smed_2001 nitrile hydratase, alpha subunit; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain
YP_002976586.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: ret:RHE_CH02785 oxidoreductase protein
YP_002976587.1	KEGG: rec:RHECIAT_CH0002926 hypothetical conserved membrane protein
YP_002976588.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0002927 probable amino acid efflux protein, LysE family; SNP /replace=A
YP_002976589.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002928 aldo-keto reductase family protein
YP_002976590.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_002976591.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: rec:RHECIAT_CH0002930 acetolactate synthase III protein, large subunit
YP_002976592.1	PFAM: protein of unknown function DUF87; KEGG: rec:RHECIAT_CH0002932 hypothetical protein
YP_002976593.1	PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_CH0002933 dihydrodipicolinate synthase protein
YP_002976594.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0002934 probable amino acid efflux protein, LysE family
YP_002976595.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: bur:Bcep18194_B0395 GntR family transcriptional regulator
YP_002976596.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002976597.1	KEGG: rec:RHECIAT_CH0002937 phosphoserine phosphatase protein; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase
YP_002976598.1	KEGG: rec:RHECIAT_CH0002938 serine protease Do protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein
YP_002976599.1	KEGG: rec:RHECIAT_CH0002939 hydrolase serine protease transmembrane subunit C protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein
YP_002976600.1	KEGG: rec:RHECIAT_CH0002940 hydrolase serine protease transmembrane subunit K protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein
YP_002976601.1	PFAM: dihydrofolate reductase region; KEGG: rec:RHECIAT_CH0002941 dihydrofolate reductase protein
YP_002976602.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_002976603.1	PFAM: protein of unknown function DUF1321; KEGG: ret:RHE_CH02800 hypothetical protein
YP_002976604.1	KEGG: ret:RHE_CH02801 hypothetical protein
YP_002976605.1	KEGG: ret:RHE_CH02802 hypothetical protein
YP_002976606.1	KEGG: rec:RHECIAT_CH0002947 hypothetical protein
YP_002976607.1	PFAM: FAD linked oxidase domain protein; KEGG: rec:RHECIAT_CH0002948 D-lactate dehydrogenase (cytochrome) protein
YP_002976608.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002949 oxidoreductase protein
YP_002976609.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH02806 LysR family transcriptional regulator
YP_002976610.1	TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; KEGG: rec:RHECIAT_CH0002951 ammonia monooxygenase protein
YP_002976611.1	PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0002955 probable transcriptional regulator protein, AraC family
YP_002976612.1	KEGG: rec:RHECIAT_CH0002956 hypothetical protein
YP_002976613.1	PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: ret:RHE_CH02810 outer membrane lipoprotein
YP_002976614.1	PFAM: flagellin domain protein; KEGG: rec:RHECIAT_CH0002958 flagellin C protein
YP_002976615.1	PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH02812 acriflavin resistance efflux transporter
YP_002976616.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH02813 HlyD family protein secretion protein
YP_002976617.1	KEGG: rec:RHECIAT_CH0002961 adenylate cyclase protein
YP_002976618.1	PFAM: SpoVR family protein; KEGG: rec:RHECIAT_CH0002964 sporulation like protein, SpoVR family
YP_002976619.1	PFAM: protein of unknown function DUF444; KEGG: rec:RHECIAT_CH0002965 hypothetical protein
YP_002976620.1	PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: rec:RHECIAT_CH0002966 serine protein kinase protein
YP_002976621.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: ret:RHE_CH02818 hypothetical protein
YP_002976622.1	PFAM: UvrD/REP helicase; KEGG: rec:RHECIAT_CH0002969 ATP-dependent DNA helicase II protein
YP_002976623.1	KEGG: rec:RHECIAT_CH0002970 hypothetical protein
YP_002976624.1	KEGG: casA; calcium-binding protein
YP_002976625.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_CH02821 pyrazinamidase/nicotinamidase protein
YP_002976626.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_CH0002973 probable riboflavin biosynthesis protein
YP_002976627.1	KEGG: ret:RHE_CH02823 hypothetical protein
YP_002976628.1	KEGG: ret:RHE_CH02824 hypothetical protein
YP_002976629.1	PFAM: AzlC family protein; KEGG: rec:RHECIAT_CH0002975 branched-chain amino acid permease (azaleucine resistance) protein
YP_002976630.1	PFAM: branched-chain amino acid transport; KEGG: rec:RHECIAT_CH0002976 hypothetical conserved membrane protein
YP_002976631.1	PFAM: peptidase M24; creatinase; KEGG: ret:RHE_CH02827 aminopeptidase P protein
YP_002976633.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_002976634.1	PFAM: electron transport protein SCO1/SenC; KEGG: rec:RHECIAT_CH0002979 cytochrome C oxidase assembly factor protein
YP_002976635.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: rec:RHECIAT_CH0002981 chemotaxis signal transduction protein
YP_002976636.1	PFAM: CreA family protein; KEGG: rec:RHECIAT_CH0002982 hypothetical conserved protein, CreA family
YP_002976637.1	PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: ret:RHE_CH02833 DNA polymerase III, epsilon subunit protein
YP_002976638.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002984 probable acetyltransferase protein
YP_002976639.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_002976640.1	KEGG: ret:RHE_CH02836 hypothetical protein
YP_002976641.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rec:RHECIAT_CH0002987 DNA repair protein
YP_002976642.1	TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: ret:RHE_CH02838 hypothetical protein
YP_002976643.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_002976644.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002976645.1	TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: rec:RHECIAT_CH0002992 cell division protein
YP_002976646.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: ret:RHE_CH02842 cell division protein
YP_002976647.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002976648.1	porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure
YP_002976649.1	PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: ABC transporter; SNP /replace=A
YP_002976650.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0002995 UDP-glucose 4-epimerase protein
YP_002976651.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002976652.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002976653.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002976654.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rec:RHECIAT_CH0002999 cell division protein
YP_002976655.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_002976656.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002976657.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: ret:RHE_CH02851 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein; SNP /replace=C
YP_002976658.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_002976659.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rec:RHECIAT_CH0003004 cell division penicillin-binding protein
YP_002976660.1	KEGG: rec:RHECIAT_CH0003005 hypothetical protein
YP_002976661.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rec:RHECIAT_CH0003006 S-adenosyl-methyltransferase protein
YP_002976662.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_002976663.1	PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0003008 probable sarcosine oxidase protein
YP_002976664.1	PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_CH02858 sarcosine oxidase protein
YP_002976665.1	PFAM: Lytic transglycosylase catalytic; KEGG: rec:RHECIAT_CH0003010 probable transglycosylase protein
YP_002976666.1	KEGG: ret:RHE_CH02860 N-acetylmuramoyl-L-alanine amidase protein; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; peptidoglycan-binding domain 1 protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2
YP_002976667.1	PFAM: protein of unknown function DUF1332; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_CH0003012 molecular chaperone protein, DnaJ family; SNP /replace=G
YP_002976668.1	catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate
YP_002976669.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0003015 probable amino acid efflux protein, LysE family
YP_002976670.1	PFAM: Lytic transglycosylase catalytic; KEGG: ret:RHE_CH02864 transglycosylase protein
YP_002976671.1	PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0003017 6-aminohexanoate-dimer hydrolase protein
YP_002976672.1	KEGG: rec:RHECIAT_CH0003018 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase protein
YP_002976673.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0003019 S-adenosylmethionine:diacylgycerolhomoserine-N- methyltransferase protein
YP_002976674.1	PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: ret:RHE_CH02868 glycoside hydrolase protein
YP_002976675.1	TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: rec:RHECIAT_CH0003021 probable membrane-bound lytic murein transglycosylase protein
YP_002976676.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02870 permease protein
YP_002976677.1	KEGG: rec:RHECIAT_CH0003023 5,10-methylenetetrahydrofolate reductase protein; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_002976678.1	PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; regulatory protein ArsR; methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0003024 probable methyltransferase transcriptional regulator protein, ArsR family
YP_002976679.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_002976680.1	PFAM: ribonuclease T2; KEGG: rec:RHECIAT_CH0003026 probable enterobacter ribonuclease protein
YP_002976681.1	PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0003027 lysophospholipase protein
YP_002976682.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003028 transporter, permease protein
YP_002976683.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rec:RHECIAT_CH0003029 acyl-CoA transferase/L-carnitine dehydrogenase protein
YP_002976684.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ret:RHE_CH02878 acetolactate synthase 2 catalytic subunit
YP_002976685.1	PFAM: endoribonuclease L-PSP; KEGG: rec:RHECIAT_CH0003031 translation initiation inhibitor protein
YP_002976686.1	PFAM: protein of unknown function DUF442; KEGG: ret:RHE_CH02880 hypothetical protein
YP_002976687.1	KEGG: rec:RHECIAT_CH0003033 hypothetical protein
YP_002976688.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH02882 hypothetical protein
YP_002976689.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_CH02883 chromosome partitioning protein A
YP_002976690.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: ret:RHE_CH02884 alcohol dehydrogenase protein
YP_002976691.1	PFAM: aldehyde Dehydrogenase; KEGG: ret:RHE_CH02885 aldehyde dehydrogenase
YP_002976692.1	PFAM: glutamine synthetase catalytic region; KEGG: rec:RHECIAT_CH0003038 glutamine synthetase protein
YP_002976693.1	PFAM: amino acid permease-associated region; KEGG: rec:RHECIAT_CH0003039 amino acid permease protein
YP_002976694.1	PFAM: N-formylglutamate amidohydrolase; KEGG: ret:RHE_CH02888 N-formylglutamate amidohydrolase protein
YP_002976695.1	PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: ret:RHE_CH02889 RpiR family transcriptional regulator
YP_002976696.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003042 probable ABC transporter, substrate-binding protein
YP_002976697.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02891 ABC transporter permease
YP_002976698.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003044 probable ABC transporter, permease protein
YP_002976699.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003045 probable ABC transporter, ATP-binding protein
YP_002976700.1	PFAM: NIPSNAP family containing protein; KEGG: mlo:mlr4215 hypothetical protein
YP_002976701.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_CH02894 sugar ABC transporter, ATP-binding protein
YP_002976702.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0003047 probable oxidoreductase protein
YP_002976703.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003048 probable sugar ABC transporter, permease protein
YP_002976704.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003049 probable sugar ABC transporter, permease protein
YP_002976705.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH02898 sugar ABC transporter, substrate-binding protein
YP_002976706.1	PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: rec:RHECIAT_CH0003052 N-acetylglucosamine kinase protein
YP_002976707.1	PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0003053 probable transcriptional regulator protein
YP_002976708.1	PFAM: PilT protein domain protein; KEGG: tmz:Tmz1t_0047 PilT protein domain protein
YP_002976709.1	TIGRFAM: prevent-host-death family protein; KEGG: rec:RHECIAT_CH0003055 hypothetical protein
YP_002976710.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_002976711.1	PFAM: N-acylglucosamine 2-epimerase; KEGG: rec:RHECIAT_CH0003057 N-acylglucosamine 2-epimerase protein
YP_002976712.1	KEGG: cak:Caul_0754 hypothetical protein
YP_002976713.1	PFAM: protein of unknown function DUF336; KEGG: ret:RHE_CH02903 hypothetical protein
YP_002976714.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_CH0003059 flavin reductase protein
YP_002976715.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: rec:RHECIAT_CH0003060 probable hydantoin racemase protein
YP_002976716.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003061 probable spermidine/putrescine ABC transporter, permease protein
YP_002976717.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02907 spermidine/putrescine ABC transporter permease
YP_002976718.1	KEGG: rec:RHECIAT_CH0003063 probable spermidine/putrescine ABC transporter, substrate-binding protein
YP_002976719.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003064 probable spermidine/putrescine ABC transporter, ATP-binding protein
YP_002976720.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0003065 probable transcriptional regulator protein, GntR family
YP_002976721.1	KEGG: rec:RHECIAT_CH0000809 hypothetical protein
YP_002976722.1	KEGG: ret:RHE_CH02912 hypothetical protein; SNP /replace=C
YP_002976723.1	KEGG: rec:RHECIAT_CH0003068 hypothetical protein
YP_002976724.1	KEGG: ret:RHE_CH02913 hypothetical protein
YP_002976725.1	KEGG: hypothetical protein
YP_002976727.1	PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ret:RHE_CH02915 autoinducer transcriptional regulator protein
YP_002976728.1	PFAM: autoinducer synthesis protein; KEGG: rec:RHECIAT_CH0003073 autoinducer synthesis protein
YP_002976729.1	KEGG: rec:RHECIAT_CH0003074 hypothetical protein
YP_002976730.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0003075 probable two-component response regulator protein
YP_002976731.1	KEGG: bac:BamMC406_6706 hypothetical protein
YP_002976733.1	KEGG: rec:RHECIAT_CH0001888 hypothetical protein
YP_002976735.1	PFAM: protein of unknown function DUF541; KEGG: ret:RHE_CH02935 hypothetical protein
YP_002976736.1	KEGG: rec:RHECIAT_CH0003102 hypothetical protein
YP_002976737.1	KEGG: ret:RHE_CH02937 hypothetical protein
YP_002976738.1	PFAM: protein of unknown function UPF0047; KEGG: ret:RHE_CH02938 hypothetical protein
YP_002976739.1	PFAM: protein of unknown function DUF1428; KEGG: sme:SMc01560 hypothetical protein
YP_002976740.1	PFAM: protein of unknown function DUF922; KEGG: rec:RHECIAT_CH0003105 hypothetical protein
YP_002976741.1	PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: permease protein
YP_002976742.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: ret:RHE_CH02940 Crp/Fnr family transcriptional regulator
YP_002976743.1	KEGG: ret:RHE_CH02941 hypothetical protein
YP_002976745.1	PFAM: protein of unknown function DUF427; KEGG: rec:RHECIAT_CH0003107 hypothetical protein
YP_002976746.1	PFAM: B3/4 domain protein; KEGG: rec:RHECIAT_CH0003108 hypothetical protein
YP_002976747.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003109 permease protein
YP_002976748.1	PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH02946 AraC family transcriptional regulator
YP_002976749.1	PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_CH02947 aminoglycoside 3'-phosphotransferase protein
YP_002976750.1	KEGG: rec:RHECIAT_CH0003112 hypothetical protein
YP_002976751.1	PFAM: protein of unknown function DUF930; KEGG: rec:RHECIAT_CH0003113 hypothetical protein
YP_002976752.1	PFAM: protein of unknown function DUF930; KEGG: mlo:mlr0330 hypothetical protein
YP_002976753.1	PFAM: GYD family protein; KEGG: rec:RHECIAT_CH0003114 hypothetical protein
YP_002976754.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_002976755.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0003116 hypothetical protein
YP_002976756.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_002976757.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_002976758.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sme:SMc01426 hypothetical protein
YP_002976759.1	KEGG: rec:RHECIAT_CH0003119 ATP-dependent DNA helicase protein; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase; HRDC domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein
YP_002976760.1	synthesizes RNA primers at the replication forks
YP_002976761.1	KEGG: ret:RHE_CH02955 hypothetical protein
YP_002976762.1	KEGG: ret:RHE_CH02956 hypothetical protein
YP_002976763.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_002976764.1	KEGG: ret:RHE_CH02961 hypothetical protein
YP_002976765.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rec:RHECIAT_CH0003128 probable multidrug efflux protein
YP_002976766.1	PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: ret:RHE_CH02963 transporter, permease protein
YP_002976767.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0003130 oxidoreductase protein
YP_002976768.1	PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: ret:RHE_CH02964 zinc protease protein
YP_002976769.1	KEGG: hypothetical protein
YP_002976770.1	PFAM: LytTr DNA-binding region; KEGG: hypothetical protein
YP_002976771.1	four carb-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; carb is responsible for the amidotransferase activity
YP_002976772.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rec:RHECIAT_CH0003134 uracil DNA glycosylase protein
YP_002976773.1	PFAM: Radical SAM domain protein; KEGG: rec:RHECIAT_CH0003135 hypothetical protein
YP_002976774.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_002976775.1	PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0003137 lipopolysaccharide core biosynthesis mannosyltransferase protein
YP_002976776.1	involved in the transport of C4-dicarboxylates across the membrane
YP_002976777.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH02972 two-component sensor histidine kinase protein regulating C4-dicarboxylate transport system
YP_002976778.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: ret:RHE_CH02973 two-component response regulator protein regulating C4-dicarboxylate transport system
YP_002976779.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0003141 leucine-responsive transcriptional regulator protein, AsnC family
YP_002976780.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0003142 thioredoxin reductase (NADPH) protein
YP_002976781.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003143 probable transcriptional regulator protein, LysR family
YP_002976782.1	SMART: regulatory protein ArsR; KEGG: ret:RHE_CH02977 ArsR family transcriptional regulator
YP_002976783.1	PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_1336 major facilitator family transporter
YP_002976784.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rec:RHECIAT_CH0003145 glycerol trinitrate reductase protein
YP_002976785.1	Contains selenocysteine; PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: ret:RHE_CH02980 antibiotic resistance (streptomycin kinase) protein
YP_002976786.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH02989 hypothetical protein
YP_002976787.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003148 probable transcriptional regulator protein, LysR family
YP_002976788.1	PFAM: protein of unknown function UPF0157; KEGG: rec:RHECIAT_CH0003149 hypothetical protein
YP_002976789.1	KEGG: ret:RHE_CH02992 hypothetical protein
YP_002976790.1	PFAM: sodium/calcium exchanger membrane region; KEGG: rec:RHECIAT_CH0003151 LPS-associated cation exporter (Ca2+/H+ antiporter) protein
YP_002976791.1	KEGG: rec:RHECIAT_CH0003152 3-deoxy-manno-octulosonate cytidylyltransferase protein
YP_002976792.1	PFAM: glycosyl transferase family 8; KEGG: ret:RHE_CH02996 galactosyltransferase protein
YP_002976793.1	PFAM: PilT protein domain protein; KEGG: ret:RHE_CH02997 hypothetical protein
YP_002976794.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: jan:Jann_1433 prevent-host-death protein
YP_002976795.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002976796.1	PFAM: Vault protein inter-alpha-trypsin domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa; KEGG: rec:RHECIAT_CH0003156 vault protein inter-alpha-trypsin domain
YP_002976797.1	TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: ret:RHE_CH03001 hypothetical protein
YP_002976798.1	PFAM: glucose sorbosone dehydrogenase; KEGG: ret:RHE_CH03002 glucose dehydrogenase B protein
YP_002976799.1	KEGG: rec:RHECIAT_CH0003159 hypothetical protein
YP_002976800.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003160 transporter protein
YP_002976801.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0003162 cold shock protein
YP_002976802.1	PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0003163 hypothetical protein
YP_002976803.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PC0000478 methyl-accepting chemotaxis protein
YP_002976804.1	KEGG: ABC-type nitrate/sulfonate/bicarbonate transport   system protein, periplasmic component (substrate binding   protein) ; K02051 sulfonate/nitrate/taurine transport   system substrate-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3
YP_002976805.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nrtB; nitrate ABC transporter ; K02050 sulfonate/nitrate/taurine transport system permease protein
YP_002976806.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aliphatic sulphonate ABC transporter ; K02049 sulfonate/nitrate/taurine transport system ATP-binding protein
YP_002976807.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH03009 two-component sensor histidine kinase protein
YP_002976808.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0003167 probable two-component response regulator protein
YP_002976809.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0003168 probable transcriptional regulator protein, MarR family
YP_002976810.1	KEGG: rec:RHECIAT_CH0003169 hypothetical protein
YP_002976811.1	PFAM: protein of unknown function DUF1236; SH3 type 3 domain protein; KEGG: ret:RHE_CH03012 hypothetical protein
YP_002976812.1	PFAM: beta-lactamase; KEGG: ret:RHE_CH03013 hydrolase protein
YP_002976813.1	TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: rec:RHECIAT_CH0003172 chaperone methionine--tRNA ligase protein
YP_002976814.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002976815.1	PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0003174 hypothetical protein
YP_002976816.1	PFAM: protein of unknown function DUF526; KEGG: ret:RHE_CH03017 hypothetical protein
YP_002976817.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002976818.1	PFAM: protein of unknown function DUF185; KEGG: rec:RHECIAT_CH0003177 hypothetical protein
YP_002976819.1	PFAM: protein of unknown function DUF152; KEGG: rec:RHECIAT_CH0003178 hypothetical protein
YP_002976820.1	PFAM: peptidase M24; creatinase; KEGG: rec:RHECIAT_CH0003179 probable Xaa-Pro dipeptidase protein
YP_002976821.1	KEGG: ret:RHE_CH03022 hypothetical protein
YP_002976822.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_002976823.1	KEGG: ret:RHE_CH03024 hypothetical protein
YP_002976824.1	KEGG: atc:AGR_C_4046 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; MHYT domain protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002976825.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_002976826.1	KEGG: rec:RHECIAT_CH0003185 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein
YP_002976827.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ret:RHE_CH03027 amino acid ABC transporter, substrate-binding protein
YP_002976828.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002976829.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003188 acetyltransferase protein
YP_002976830.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_002976831.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002976832.1	KEGG: rec:RHECIAT_CH0003191 hypothetical protein
YP_002976833.1	PFAM: MaoC domain protein dehydratase; KEGG: ret:RHE_CH03033 enoyl-CoA hydratase protein
YP_002976834.1	PFAM: MaoC domain protein dehydratase; KEGG: rec:RHECIAT_CH0003193 enoyl-CoA hydratase protein
YP_002976835.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_002976836.1	PFAM: cytochrome C1; KEGG: ret:RHE_CH03036 ubiquinol--cytochrome C reductase, cytochrome C1 subunit protein
YP_002976837.1	PFAM: cytochrome b/b6 domain; KEGG: rec:RHECIAT_CH0003196 ubiquinol-cytochrome C reductase protein, cytochrome b subunit
YP_002976838.1	TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_CH03038 ubiquinol-cytochrome-c reductase, iron-sulfur subunit protein
YP_002976839.1	PFAM: endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_CH03039 endonuclease/exonuclease/phosphatase family protein
YP_002976840.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03040 ABC transporter ATP-binding protein
YP_002976841.1	KEGG: ret:RHE_CH03041 hypothetical protein
YP_002976842.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003201 probable ABC transporter, ATP-binding protein
YP_002976843.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rec:RHECIAT_CH0003203 tRNA/rRNA aminotransferase/methyltransferase protein
YP_002976844.1	TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: ret:RHE_CH03044 sodium-dependent phosphate transporter protein
YP_002976845.1	KEGG: ret:RHE_CH03045 hypothetical protein
YP_002976846.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_002976847.1	KEGG: rec:RHECIAT_CH0003207 hypothetical protein
YP_002976848.1	KEGG: rec:RHECIAT_CH0003208 hypothetical protein
YP_002976849.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: rec:RHECIAT_CH0003209 poly(A) polymerase protein
YP_002976850.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0003210 probable NTP pyrophosphohydrolase protein, MutT/NUDIX family
YP_002976851.1	PFAM: protein of unknown function DUF1285; KEGG: rec:RHECIAT_CH0003211 hypothetical protein
YP_002976852.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: ret:RHE_CH03052 methanol dehydrogenase regulator MoxR-like protein
YP_002976853.1	KEGG: rec:RHECIAT_CH0003213 hypothetical protein
YP_002976854.1	TIGRFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003214 hypothetical protein
YP_002976855.1	PFAM: protein of unknown function DUF1355; KEGG: rec:RHECIAT_CH0003215 hypothetical protein
YP_002976856.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003216 acetyltransferase protein
YP_002976857.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003217 probable acetyltransferase protein
YP_002976858.1	KEGG: ret:RHE_CH03061 glutathione S-transferase protein
YP_002976859.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0003219 hydrolase protein, MutT/NUDIX family
YP_002976860.1	PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003220 phosphoesterase protein
YP_002976861.1	KEGG: rec:RHECIAT_CH0003221 hypothetical protein
YP_002976862.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: rec:RHECIAT_CH0003222 RNA polymerase sigma factor protein (sigma-24)
YP_002976863.1	KEGG: rec:RHECIAT_CH0003223 hypothetical protein
YP_002976864.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: qor; quinone oxidoreductase protein
YP_002976865.1	PFAM: helix-turn-helix HxlR type; KEGG: transcriptional regulator protein
YP_002976866.1	TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rec:RHECIAT_CH0003224 2-isopropylmalate synthase protein
YP_002976867.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: rec:RHECIAT_CH0003225 benzoate transporter protein
YP_002976868.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002976869.1	KEGG: rec:RHECIAT_CH0003228 hypothetical protein
YP_002976870.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_002976871.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rec:RHECIAT_CH0003230 probable cation efflux protein
YP_002976872.1	KEGG: rec:RHECIAT_CH0003231 hypothetical protein
YP_002976873.1	KEGG: rec:RHECIAT_CH0003232 hypothetical protein
YP_002976874.1	trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II
YP_002976875.1	TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rec:RHECIAT_CH0003234 probable outer membrane iron receptor protein
YP_002976876.1	PFAM: Extensin family protein; KEGG: rec:RHECIAT_CH0003235 hypothetical protein
YP_002976877.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: mlo:msr2423 hypothetical protein
YP_002976878.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: atc:AGR_C_3278 hypothetical protein
YP_002976879.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_002976880.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003237 hypothetical protein
YP_002976881.1	KEGG: ret:RHE_CH03079 hypothetical protein
YP_002976882.1	PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; SMART: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0003239 probable transcriptional regulator protein, LuxR family
YP_002976883.1	PFAM: PAS fold-3 domain protein; KEGG: ret:RHE_CH03081 hypothetical protein
YP_002976884.1	KEGG: rec:RHECIAT_CH0003240 hypothetical protein
YP_002976885.1	KEGG: ret:RHE_CH03083 hypothetical protein
YP_002976886.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_002976887.1	TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rec:RHECIAT_CH0003243 proline/glycine betaine ABC transporter, substrate-binding protein
YP_002976888.1	TIGRFAM: choline ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003244 proline/glycine betaine ABC transporter, permease protein
YP_002976889.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003245 proline/glycine betaine ABC transporter, ATP-binding protein
YP_002976890.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_CH0003246 hypothetical protein
YP_002976891.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0003247 transcriptional regulator protein (repressor of nodulation genes), ArsR family
YP_002976892.1	catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor
YP_002976893.1	KEGG: rec:RHECIAT_CH0003249 phosphohydrolase protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002976894.1	PFAM: Extracellular ligand-binding receptor; KEGG: rec:RHECIAT_CH0003251 amino acid ABC transporter, substrate-binding protein
YP_002976896.1	KEGG: ret:RHE_CH03094 adenine deaminase protein; TIGRFAM: adenine deaminase; PFAM: amidohydrolase
YP_002976897.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rec:RHECIAT_CH0003254 probable alpha-glucosidase protein
YP_002976898.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0003255 oligopeptide ABC transporter, substrate-binding protein
YP_002976899.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003256 oligopeptide ABC transporter, permease protein
YP_002976900.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH03098 oligopeptide ABC transporter, permease protein
YP_002976901.1	KEGG: ret:RHE_CH03099 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase
YP_002976902.1	KEGG: rec:RHECIAT_CH0003259 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase
YP_002976903.1	KEGG: ret:RHE_CH03101 hypothetical protein
YP_002976904.1	PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0003261 2-dehydro-3-deoxygluconokinase protein
YP_002976905.1	KEGG: ret:RHE_CH03103 glutamine synthetase translation inhibitor protein
YP_002976906.1	PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: ret:RHE_CH03104 glutamine synthetase II protein
YP_002976907.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH03105 glycosyltransferase
YP_002976908.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ret:RHE_CH03106 lipase protein
YP_002976909.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0003267 probable transcriptional regulator protein, MarR family
YP_002976910.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002976911.1	KEGG: rec:RHECIAT_CH0003269 hypothetical protein
YP_002976912.1	PFAM: NnrUfamily protein; KEGG: rec:RHECIAT_CH0003270 nitrate reductase protein
YP_002976913.1	KEGG: rec:RHECIAT_CH0003271 hypothetical protein
YP_002976914.1	in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope
YP_002976915.1	PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0003273 permease protein
YP_002976916.1	PFAM: transcriptional regulator PadR family protein; KEGG: ret:RHE_CH03114 PadR family transcriptional regulator
YP_002976917.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential
YP_002976918.1	PFAM: Luciferase-like monooxygenase; KEGG: rec:RHECIAT_CH0003277 probable oxidoreductase protein
YP_002976919.1	PFAM: Excinuclease ABC C subunit domain protein; KEGG: sme:SMc00344 hypothetical protein
YP_002976920.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0003278 hypothetical protein
YP_002976921.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_CH0003279 probable RNA polymerase sigma factor protein (sigma-70)
YP_002976922.1	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0003280 hypothetical protein
YP_002976923.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cak:Caul_5147 metal dependent phosphohydrolase
YP_002976924.1	PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_5992 AraC family transcriptional regulator
YP_002976925.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0003281 glycerol kinase protein
YP_002976926.1	TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0003282 D-beta-hydroxybutyrate dehydrogenase protein
YP_002976927.1	TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; ferredoxin; KEGG: ret:RHE_CH03124 xanthine dehydrogenase protein
YP_002976929.1	KEGG: rec:RHECIAT_CH0003284 xanthine dehydrogenase protein, B subunit; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead
YP_002976930.1	TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: rec:RHECIAT_CH0003285 xanthine dehydrogenase protein, C subunit
YP_002976931.1	KEGG: rec:RHECIAT_CH0003286 hypothetical protein
YP_002976932.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003287 probable transcriptional regulator protein, LysR family
YP_002976933.1	KEGG: rec:RHECIAT_CH0003288 hypothetical protein
YP_002976934.1	PFAM: peptidase S51 dipeptidase E; KEGG: rec:RHECIAT_CH0003289 hypothetical conserved fusion protein
YP_002976935.1	PFAM: protein of unknown function DUF989; KEGG: rec:RHECIAT_CH0003290 hypothetical protein
YP_002976936.1	Catalyzes the deamination of guanine
YP_002976937.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rec:RHECIAT_CH0003294 L-lactate dehydrogenase (cytochrome) protein
YP_002976938.1	PFAM: PspA/IM30 family protein; KEGG: rec:RHECIAT_CH0003356 phage-related protein
YP_002976939.1	PFAM: protein of unknown function DUF1449; KEGG: ret:RHE_CH03137 hypothetical protein
YP_002976940.1	PFAM: band 7 protein; SMART: band 7 protein; KEGG: ret:RHE_CH03138 hypothetical protein
YP_002976941.1	PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003359 DNA repair protein
YP_002976942.1	TIGRFAM: hydroxyisourate hydrolase; PFAM: transthyretin; KEGG: rec:RHECIAT_CH0003360 transthyretin-like protein
YP_002976943.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_002976944.1	PFAM: protein of unknown function DUF86; KEGG: rec:RHECIAT_CH0003362 hypothetical protein
YP_002976945.1	TIGRFAM: OHCU decarboxylase; KEGG: rec:RHECIAT_CH0003363 hypothetical protein
YP_002976946.1	KEGG: ret:RHE_CH03142 chitooligosaccharide deacetylase protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase
YP_002976947.1	PFAM: protein of unknown function DUF1045; KEGG: rec:RHECIAT_CH0003365 hypothetical protein
YP_002976948.1	PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0003366 probable D-amino acid oxidase protein
YP_002976949.1	PFAM: protein of unknown function DUF752; KEGG: rec:RHECIAT_CH0003367 hypothetical protein
YP_002976950.1	TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: mch:Mchl_3466 addiction module antidote protein, CopG/Arc/MetJ family
YP_002976951.1	PFAM: plasmid stabilization system; KEGG: mch:Mchl_3467 plasmid stabilization system
YP_002976952.1	KEGG: ret:RHE_CH03146 two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein
YP_002976953.1	KEGG: rec:RHECIAT_CH0003370 hypothetical protein
YP_002976954.1	PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rec:RHECIAT_CH0003371 probable transporter protein
YP_002976955.1	PFAM: dihydrodipicolinate synthetase; KEGG: ret:RHE_CH03149 dihydrodipicolinate synthase protein
YP_002976956.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ret:RHE_CH03150 LacI family transcription regulator
YP_002976957.1	PFAM: HEAT domain containing protein; KEGG: rec:RHECIAT_CH0003374 DNA alkylation repair protein
YP_002976958.1	PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: rec:RHECIAT_CH0003375 ATP-dependent RNA helicase protein
YP_002976959.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003376 hypothetical conserved membrane protein
YP_002976960.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rec:RHECIAT_CH0003377 hypothetical protein
YP_002976961.1	PFAM: protein of unknown function DUF403; KEGG: rec:RHECIAT_CH0003378 hypothetical protein
YP_002976962.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: ret:RHE_CH03158 transglutaminase protein
YP_002976963.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: metal dependent phosphohydrolase with a response regulator receiver protein ; K07814 two-component system response regulator
YP_002976964.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_002976965.1	PFAM: aldehyde Dehydrogenase; KEGG: ret:RHE_CH03161 aldehyde dehydrogenase
YP_002976966.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ret:RHE_CH03162 GguC protein
YP_002976967.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03163 xylose ABC transporter, permease protein
YP_002976968.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03164 xylose ABC transporter, ATP-binding protein
YP_002976969.1	KEGG: rec:RHECIAT_CH0003387 xylose ABC transporter, substrate-binding protein
YP_002976970.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH03166 LysR family transcriptional regulator
YP_002976971.1	KEGG: ret:RHE_CH03167 hypothetical protein
YP_002976972.1	KEGG: ret:RHE_CH03168 hypothetical protein
YP_002976974.1	KEGG: rec:RHECIAT_CH0003390 hypothetical protein
YP_002976975.1	PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0003391 myo-inositol 2-dehydrogenase protein
YP_002976976.1	PFAM: ROK family protein; KEGG: ret:RHE_CH03171 transcriptional regulator protein
YP_002976977.1	TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; KEGG: rec:RHECIAT_CH0003393 xylose ABC transporter, substrate-binding protein
YP_002976978.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003394 xylose ABC transporter, permease protein
YP_002976979.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003395 xylose ABC transporter, ATP-binding protein
YP_002976980.1	KEGG: rec:RHECIAT_CH0003429 hypothetical protein
YP_002976981.1	PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: ret:RHE_CH03184 hypothetical protein
YP_002976982.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: rec:RHECIAT_CH0003436 probable UDP-glucose 4-epimerase protein
YP_002976983.1	KEGG: rec:RHECIAT_CH0003437 probable glycosyltransferase protein
YP_002976984.1	PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_7448 glycosyl transferase, group 2 family protein
YP_002976985.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03196 glycosyltransferase
YP_002976986.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mrd:Mrad2831_4620 ABC transporter
YP_002976987.1	PFAM: ABC transporter; KEGG: mxa:MXAN_4623 O-antigen ABC exporter, permease protein
YP_002976988.1	PFAM: glycosyl transferase family 2; polysaccharide deacetylase; methyltransferase type 12; methyltransferase type 11; NodS family protein; KEGG: mlo:mll3280 hypothetical protein
YP_002976989.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03198 glycosyltransferase
YP_002976990.1	KEGG: rec:RHECIAT_CH0003443 hypothetical protein
YP_002976991.1	KEGG: rec:RHECIAT_CH0003445 hypothetical protein
YP_002976992.1	PFAM: TfuA domain protein core; KEGG: ret:RHE_CH03204 hypothetical protein
YP_002976993.1	PFAM: protein of unknown function DUF181; KEGG: ret:RHE_CH03205 hypothetical protein
YP_002976994.1	KEGG: ret:RHE_CH03206 hypothetical protein
YP_002976995.1	KEGG: ret:RHE_CH03207 hypothetical protein
YP_002976996.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0003450 probable transcriptional regulator protein
YP_002976997.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: ret:RHE_CH03209 methyltransferase protein
YP_002976998.1	KEGG: ret:RHE_CH03210 exopolysaccharide production protein
YP_002977000.1	KEGG: ret:RHE_CH03212 endo-1,4-beta-xylanase protein; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10
YP_002977001.1	PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0003454 glycosyl transferase protein
YP_002977002.1	KEGG: ret:RHE_CH03214 acetyltransferase protein
YP_002977003.1	PFAM: ExoV-like protein; KEGG: ret:RHE_CH03215 ketal pyruvate transferase protein
YP_002977004.1	PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH03216 exopolysaccharide polymerization and/or export protein
YP_002977005.1	PFAM: polysaccharide pyruvyl transferase; KEGG: ret:RHE_CH03217 exopolysaccharide polymerization protein
YP_002977006.1	KEGG: ret:RHE_CH03218 galactosyltransferase protein
YP_002977007.1	PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0003461 glycosyltransferase protein
YP_002977008.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03222 glycosyltransferase protein
YP_002977009.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03223 glycosyltransferase protein
YP_002977010.1	PFAM: oligosaccharide biosynthesis protein Alg14 like; KEGG: ret:RHE_CH03225 glucuronosyltransferase protein
YP_002977011.1	PFAM: Glycosyltransferase 28 domain; KEGG: ret:RHE_CH03226 glucuronosyltransferase protein
YP_002977012.1	PFAM: lipolytic protein G-D-S-L family; KEGG: ret:RHE_CH03227 acyl-CoA thioesterase/lipase protein
YP_002977013.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03228 HlyD family protein secretion protein
YP_002977014.1	KEGG: ret:RHE_CH03229 protease/lipase ABC transporter, ATP-binding and permease protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase
YP_002977015.1	SMART: carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; KEGG: ret:RHE_CH03230 polysaccharidase protein
YP_002977016.1	KEGG: ret:RHE_CH03231 autoaggregation protein
YP_002977017.1	KEGG: ret:RHE_CH03232 hypothetical protein
YP_002977018.1	TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0003473 exopolysaccharide polymerization protein
YP_002977019.1	KEGG: rec:RHECIAT_CH0003474 exopolysaccharide inner membrane protein
YP_002977020.1	PFAM: polysaccharide export protein; KEGG: rec:RHECIAT_CH0003475 exopolysaccharide export protein
YP_002977021.1	KEGG: rec:RHECIAT_CH0003476 endo-1,4-beta-xylanase protein (exopolysaccharide export)
YP_002977022.1	PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: ret:RHE_CH03237 hypothetical protein
YP_002977023.1	KEGG: rec:RHECIAT_CH0003478 UDP-glucose 6-dehydrogenase protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_002977024.1	PFAM: metallophosphoesterase; KEGG: ret:RHE_CH03239 serine/threonine specific protein phosphatase protein
YP_002977025.1	KEGG: rec:RHECIAT_CH0003482 hypothetical protein
YP_002977026.1	PFAM: phospholipase/carboxylesterase; KEGG: ret:RHE_CH03240 esterase/lipase/thioesterase protein
YP_002977027.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0003485 probable dioxygenase protein
YP_002977028.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002977029.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: ret:RHE_CH03243 phosphomannomutase protein
YP_002977030.1	KEGG: rec:RHECIAT_CH0003488 mannose-1-phosphate guanylyltransferase (GDP) protein; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein
YP_002977031.1	KEGG: rec:RHECIAT_CH0003489 hypothetical protein
YP_002977032.1	PFAM: endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_CH03246 endonuclease/exonuclease/phosphatase family protein
YP_002977033.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0003491 UDP-glucuronic acid epimerase protein
YP_002977034.1	KEGG: rec:RHECIAT_CH0003492 hypothetical protein
YP_002977035.1	KEGG: rec:RHECIAT_CH0003493 hypothetical protein
YP_002977036.1	PFAM: transcriptional regulator TetR ; regulatory protein TetR; KEGG: rec:RHECIAT_CH0003494 probable transcriptional regulator protein, TetR family
YP_002977037.1	PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03250 hypothetical protein
YP_002977038.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003496 probable ABC transporter, ATP-binding protein
YP_002977039.1	PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0003497 probable ABC transporter, permease protein
YP_002977040.1	PFAM: ABC transporter; KEGG: ret:RHE_CH03253 ABC transporter permease
YP_002977041.1	PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0003499 hypothetical protein
YP_002977043.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH03255 myo-inositol 2-dehydrogenase protein
YP_002977044.1	PFAM: protein of unknown function DUF1037; KEGG: ret:RHE_CH03256 trehalosemaltose utilization protein
YP_002977045.1	PFAM: small multidrug resistance protein; KEGG: rec:RHECIAT_CH0003503 methyl viologen/ethidium resistance protein
YP_002977046.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0003504 probable transcriptional regulator protein, TetR family
YP_002977047.1	PFAM: globin; KEGG: rec:RHECIAT_CH0003505 globin family protein
YP_002977048.1	PFAM: protein of unknown function DUF423; KEGG: rec:RHECIAT_CH0003506 hypothetical protein
YP_002977049.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rec:RHECIAT_CH0003507 antibiotic biosynthesis monooxygenase protein
YP_002977050.1	KEGG: rec:RHECIAT_CH0003508 hypothetical protein
YP_002977051.1	KEGG: ret:RHE_CH03264 hypothetical protein
YP_002977052.1	TIGRFAM: TonB family protein; KEGG: ret:RHE_CH03265 membrane protein, transduces energy to outer membrane receptors
YP_002977053.1	KEGG: rec:RHECIAT_CH0003511 hypothetical protein
YP_002977054.1	KEGG: ret:RHE_CH03267 hemin transport system, hemin uptake protein
YP_002977055.1	PFAM: Haemin-degrading family protein; KEGG: rec:RHECIAT_CH0003513 hemin transport system, degrading protein
YP_002977056.1	PFAM: periplasmic binding protein; KEGG: rec:RHECIAT_CH0003514 hemin transport system, hemin-binding protein
YP_002977057.1	PFAM: transport system permease protein; KEGG: ret:RHE_CH03270 hemin transport system, permease protein
YP_002977058.1	with HmuTU is involved in the transport of hemin
YP_002977059.1	PFAM: protein of unknown function DUF883 ElaB; KEGG: ret:RHE_CH03272 hypothetical protein
YP_002977060.1	KEGG: rec:RHECIAT_CH0003518 hypothetical protein
YP_002977061.1	PFAM: transposase IS4 family protein; KEGG: ecd:ECDH10B_2558 IS186/IS421 transposase
YP_002977062.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002977063.1	KEGG: rec:RHECIAT_CH0003520 hypothetical protein
YP_002977064.1	in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media
YP_002977065.1	PFAM: HWE histidine kinase; KEGG: ret:RHE_CH03276 two-component sensor histidine kinase protein
YP_002977066.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_002977067.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_002977068.1	TIGRFAM: peptide chain release factor H; PFAM: Class I peptide chain release factor; KEGG: bra:BRADO6515 class I peptide chain release factor domain-containing protein
YP_002977069.1	TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; KEGG: bbt:BBta_1125 hypothetical protein
YP_002977070.1	upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism
YP_002977071.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: rec:RHECIAT_CH0003527 rhodanese-related sulfurtransferase protein
YP_002977072.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0003528 probable alcohol dehydrogenase protein
YP_002977073.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH03286 LysR family transcriptional regulator
YP_002977074.1	PFAM: Haem oxygenase-like; KEGG: rec:RHECIAT_CH0003530 heme oxygenase protein
YP_002977075.1	PFAM: PAS fold-2 domain protein; Phytochrome central region domain protein; HWE histidine kinase; response regulator receiver; GAF domain protein; SMART: GAF domain protein; response regulator receiver; KEGG: rec:RHECIAT_CH0003531 phytochrome protein
YP_002977076.1	PFAM: tetracycline transcriptional regulator YcdC domain protein; regulatory protein TetR; KEGG: rec:RHECIAT_CH0003532 probable transcriptional regulator protein, TetR family
YP_002977077.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_002977078.1	PFAM: Barstar (barnase inhibitor); KEGG: bac:BamMC406_3430 hypothetical protein
YP_002977079.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_002977080.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_CH0003536 hypothetical protein
YP_002977081.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03294 nitrate/sulfonate ABC transporter, ATP-binding protein
YP_002977082.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003538 probable nitrate/sulfonate ABC transporter, permease protein
YP_002977083.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003539 probable nitrate/sulfonate ABC transporter, permease protein
YP_002977084.1	PFAM: NMT1/THI5 like domain protein; KEGG: rec:RHECIAT_CH0003540 probable nitrate/sulfonate ABC transporter, substrate-binding protein
YP_002977085.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03298 HlyD family protein secretion protein
YP_002977086.1	PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003542 probable acriflavin resistance protein (transporter protein)
YP_002977087.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: regulator of biofilm formation Fnr family
YP_002977088.1	TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: ret:RHE_CH03300 urease accessory protein
YP_002977089.1	PFAM: urease accessory protein UreF; KEGG: ret:RHE_CH03301 urease accessory protein
YP_002977090.1	PFAM: UreE urease accessory domain protein; KEGG: rec:RHECIAT_CH0003545 urease accessory protein
YP_002977091.1	KEGG: rec:RHECIAT_CH0003546 probable urease-associated protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002977092.1	KEGG: rec:RHECIAT_CH0003547 probable urease-associated protein
YP_002977093.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_002977094.1	KEGG: ret:RHE_CH03306 urease-associated protein
YP_002977095.1	PFAM: protein of unknown function DUF1311; KEGG: rec:RHECIAT_CH0003550 probable urease-associated protein
YP_002977096.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_002977097.1	PFAM: protein of unknown function DUF1272; KEGG: ret:RHE_CH03309 urease-associated protein; SNP /replace=C
YP_002977098.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_002977099.1	PFAM: urease accessory protein UreD; KEGG: ureD; urease accessory protein ; K03190 urease accessory protein
YP_002977100.1	KEGG: rec:RHECIAT_CH0003555 ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter; SMART: AAA ATPase
YP_002977101.1	KEGG: rec:RHECIAT_CH0003557 probable UreA or short-chain amide ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter; SMART: AAA ATPase
YP_002977102.1	TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003558 probable UreA or short-chain amide ABC transporter, permease protein
YP_002977103.1	TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003559 probable UreA or short-chain amide ABC transporter, permease protein
YP_002977104.1	TIGRFAM: urea ABC transporter, urea binding protein; KEGG: ret:RHE_CH03317 UreA or short-chain amide ABC transporter, substrate-binding protein
YP_002977105.1	KEGG: rec:RHECIAT_CH0003561 phosphatase protein; TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related
YP_002977106.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: rec:RHECIAT_CH0003562 probable two-component sensor histidine kinase protein
YP_002977107.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rec:RHECIAT_CH0003563 probable two-component response regulator protein
YP_002977108.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sme:SMc01943 2-hydroxyacid dehydrogenase
YP_002977109.1	PFAM: Extracellular ligand-binding receptor; KEGG: ret:RHE_CH03321 amino acid ABC transporter, substrate-binding protein
YP_002977110.1	KEGG: ret:RHE_CH03322 hypothetical protein
YP_002977111.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003566 amino acid ABC transporter, ATP-binding protein
YP_002977112.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003567 amino acid ABC transporter, ATP-binding protein
YP_002977113.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03325 amino acid ABC transporter, permease protein
YP_002977114.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003569 amino acid ABC transporter, permease protein
YP_002977115.1	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0003571 exopolysaccharide production protein
YP_002977116.1	PFAM: sugar transferase; KEGG: rec:RHECIAT_CH0003572 exopolysaccharide production CDP-diacylglycerol-serine O-phosphatidyltransferase protein
YP_002977117.1	KEGG: ret:RHE_CH03329 hypothetical protein
YP_002977118.1	PFAM: protein of unknown function DUF1153; KEGG: ret:RHE_CH03330 hypothetical protein
YP_002977119.1	KEGG: ret:RHE_CH03331 hypothetical protein
YP_002977120.1	KEGG: ret:RHE_CH03332 acetyltransferase protein
YP_002977121.1	KEGG: rec:RHECIAT_CH0003577 hypothetical protein
YP_002977122.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0003578 two-component response regulator protein controls chromosomal replication initiation
YP_002977123.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_CH03335 two-component response regulator protein
YP_002977124.1	KEGG: ret:RHE_CH03336 hypothetical protein
YP_002977125.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003581 hypothetical protein
YP_002977126.1	KEGG: ret:RHE_CH03338 hypothetical protein
YP_002977127.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ret:RHE_CH03339 RNA methylase protein
YP_002977128.1	KEGG: rec:RHECIAT_CH0003584 hypothetical protein
YP_002977129.1	KEGG: ret:RHE_CH03341 pseudouridylate synthase, ribosomal large subunit D protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein
YP_002977130.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_002977131.1	KEGG: rec:RHECIAT_CH0003587 hypothetical protein
YP_002977132.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002977133.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003589 hypothetical conserved membrane protein
YP_002977134.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003590 acetyltransferase protein; SNP /replace=A
YP_002977135.1	KEGG: rec:RHECIAT_CH0003591 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002977136.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_002977137.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: 6-phosphogluconatedehydrogenase protein ; K00042 2-hydroxy-3-oxopropionate reductase
YP_002977138.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003593 multidrug-efflux system, acriflavin resistance protein
YP_002977139.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0003594 multidrug-efflux system secretion protein, HlyD family
YP_002977140.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: rec:RHECIAT_CH0003595 esterase protein
YP_002977141.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003596 probable transcriptional regulator protein, LysR family
YP_002977142.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: short-chain oxidoreductase protein
YP_002977143.1	member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria
YP_002977144.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003598 probable transcriptional regulator protein, LysR family
YP_002977145.1	KEGG: ret:RHE_CH03354 hypothetical protein
YP_002977146.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_002977147.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH03356 multidrug resistance protein
YP_002977148.1	PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0003602 probable protein secretion protein, HlyD family
YP_002977149.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_CH03358 MarR family transcriptional regulator
YP_002977150.1	PFAM: sodium/hydrogen exchanger; KEGG: rec:RHECIAT_CH0003604 probable Na+/H+ antiporter protein
YP_002977151.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03360 HlyD family multidrug-efflux system secretion protein
YP_002977152.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003606 multidrug-efflux system, acriflavin resistance protein
YP_002977153.1	PFAM: metallophosphoesterase; KEGG: ret:RHE_CH03362 serine/threonine specific protein phosphatase protein
YP_002977154.1	PFAM: acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase; KEGG: ret:RHE_CH03363 FMNH2-dependent monooxygenase protein
YP_002977155.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rec:RHECIAT_CH0003609 transcriptional regulator protein
YP_002977156.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_CH0003610 3-oxoacyl-[acyl-carrier-protein] reductase protein
YP_002977157.1	PFAM: xylose isomerase; KEGG: ret:RHE_CH03366 hydroxypyruvate isomerase protein
YP_002977158.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: smd:Smed_5554 periplasmic binding protein/LacI transcriptional regulator
YP_002977159.1	PFAM: extracellular solute-binding protein family 5; KEGG: smd:Smed_5555 extracellular solute-binding protein family 5
YP_002977160.1	PFAM: protein of unknown function DUF187; KEGG: smd:Smed_5556 protein of unknown function DUF187
YP_002977161.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5557 binding-protein-dependent transport systems inner membrane component
YP_002977162.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_5558 binding-protein-dependent transport systems inner membrane component
YP_002977163.1	PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase; KEGG: smd:Smed_5559 ABC transporter
YP_002977164.1	KEGG: smd:Smed_5560 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: xylose isomerase
YP_002977165.1	KEGG: mes:Meso_4460 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent
YP_002977166.1	PFAM: Glycoside hydrolase family 42 domain protein; KEGG: sus:Acid_7597 beta-galactosidase
YP_002977167.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: yen:YE0487 ABC transporter, ATP-binding protein
YP_002977168.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: psp:PSPPH_2745 dipeptide transporter DppD-like protein
YP_002977169.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE0489 transporter, permease protein
YP_002977170.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_00581 ABC transport system permease protein
YP_002977171.1	KEGG: rec:RHECIAT_CH0003612 hypothetical protein
YP_002977172.1	PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: ret:RHE_CH03368 hypothetical protein
YP_002977173.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_002977174.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003615 sn-glycerol-3-phosphate ABC transporter, permease protein
YP_002977175.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003616 sn-glycerol-3-phosphate ABC transporter, permease protein
YP_002977176.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003617 sn-glycerol 3-phosphate ABC transporter, substrate-binding protein
YP_002977177.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0003618 probable transcriptional regulator protein, ROK family
YP_002977178.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003619 probable sugar ABC transporter, substrate-binding protein
YP_002977179.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003620 probable sugar ABC transporter, permease protein
YP_002977180.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003621 probable sugar ABC transporter, permease protein
YP_002977181.1	PFAM: sugar isomerase (SIS); KEGG: rec:RHECIAT_CH0003622 probable sugar-processing enzyme, possibly aminotransferase protein
YP_002977182.1	PFAM: PfkB domain protein; KEGG: ret:RHE_CH03378 sugar kinase protein
YP_002977183.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003624 probable sugar ABC transporter, ATP-binding protein
YP_002977184.1	PFAM: glycoside hydrolase family 16; KEGG: ret:RHE_CH03380 endo-1,3-1,4-beta-glycanase protein
YP_002977185.1	PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH03381 exopolysaccharide polymerization/export protein
YP_002977186.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH03382 glycosyltransferase
YP_002977187.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH03383 glycosyltransferase
YP_002977188.1	PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_CH03384 transcriptional regulator protein
YP_002977189.1	PFAM: sugar transferase; KEGG: ret:RHE_CH03385 exopolysaccharide production protein
YP_002977190.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: ret:RHE_CH03386 exopolysaccharide transporter
YP_002977191.1	KEGG: ret:RHE_CH03387 glycosyltransferase
YP_002977192.1	PFAM: polysaccharide export protein; KEGG: ret:RHE_CH03388 exopolysaccharide biosynthesis protein
YP_002977193.1	KEGG: ret:RHE_CH03389 hypothetical protein
YP_002977195.1	PFAM: glycosyl transferase family 8; KEGG: ret:RHE_CH03391 glycosyltransferase
YP_002977197.1	KEGG: ret:RHE_CH03392 hypothetical protein
YP_002977198.1	PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_CH03384 transcriptional regulator protein
YP_002977199.1	PFAM: sugar transferase; KEGG: ret:RHE_CH03385 exopolysaccharide production protein
YP_002977201.1	PFAM: acyltransferase; KEGG: ret:RHE_CH03393 acetyltransferase protein
YP_002977202.1	KEGG: ret:RHE_CH03394 pyrroloquinoline-quinone-dependent quinate dehydrogenase protein; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone
YP_002977203.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; tetratricopeptide TPR_2 repeat protein; SMART: tetratricopeptide domain protein; KEGG: mlo:mll3276 adenylate cyclase Cya3
YP_002977204.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; tetratricopeptide TPR_4; tetratricopeptide TPR_2 repeat protein; SMART: tetratricopeptide domain protein; KEGG: adenylate cyclase protein
YP_002977205.1	KEGG: hypothetical protein
YP_002977206.1	PFAM: Ankyrin; SMART: Ankyrin; KEGG: ankyrin repeat protein
YP_002977207.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mll1686 transcriptional regulator
YP_002977208.1	KEGG: rec:RHECIAT_CH0003433 probable sugar ABC transporter, substrate-binding protein
YP_002977209.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ret:RHE_CH03191 UDP-glucose 4-epimerase protein
YP_002977210.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03190 sugar ABC transporter, ATP-binding protein
YP_002977211.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03189 sugar ABC transporter, permease protein
YP_002977212.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004121 sugar ABC transporter, ATP-binding protein
YP_002977213.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1221 probable sugar transport inner membrane protein
YP_002977214.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1220 probable uspA protein
YP_002977215.1	PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1217 hypothetical protein
YP_002977216.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3585 short-chain dehydrogenase/reductase SDR
YP_002977217.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bps:BPSS2073 GntR family regulator protein
YP_002977218.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bbr:BB4687 mandelate racemase
YP_002977219.1	KEGG: sgl:SG0242 hypothetical protein
YP_002977221.1	PFAM: FAD dependent oxidoreductase; KEGG: tbd:Tbd_1475 hypothetical protein
YP_002977222.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7886 3-oxoacyl-[acyl-carrier-protein] reductase
YP_002977223.1	PFAM: protein of unknown function DUF883 ElaB; KEGG: rec:RHECIAT_CH0003648 hypothetical protein
YP_002977224.1	KEGG: rec:RHECIAT_CH0003649 hypothetical protein
YP_002977225.1	PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: ret:RHE_CH03406 pseudouridylate synthase, ribosomal large subunit protein
YP_002977226.1	Involved in nucleotide synthesis and salvage
YP_002977227.1	PFAM: citrate transporter; TrkA-C domain protein; KEGG: rec:RHECIAT_CH0003652 transporter protein
YP_002977228.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002977229.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0003654 probable transcriptional regulator protein, TetR family
YP_002977230.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0003655 probable protein secretion protein, HlyD family
YP_002977231.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH03412 multidrug ABC transporter
YP_002977232.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ret:RHE_CH03413 nodulation protein (outer membrane efflux protein)
YP_002977233.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_CH0003658 probable transcriptional regulator protein, LacI family
YP_002977235.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ret:RHE_CH03419 inosine-uridine preferring nucleoside hydrolase protein
YP_002977236.1	PFAM: amidohydrolase; KEGG: rec:RHECIAT_CH0003664 adenine deaminase protein
YP_002977237.1	PFAM: periplasmic solute binding protein; KEGG: zinc ABC transporter ; K11604 manganese/iron transport system substrate-binding protein
YP_002977238.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: zinc ABC transporter
YP_002977239.1	PFAM: ABC transporter; transport system permease protein; KEGG: znuB; zinc uptake ABC transporter ; K11605 manganese/iron transport system permease protein
YP_002977240.1	PFAM: ABC transporter; KEGG: zinc ABC transporter ; K11606 manganese/iron transport system permease protein
YP_002977241.1	KEGG: rec:RHECIAT_CH0003665 hippurate hydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002977242.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: rec:RHECIAT_CH0003666 hypothetical protein
YP_002977243.1	PFAM: protein of unknown function DUF1468; KEGG: rec:RHECIAT_CH0003667 hypothetical protein
YP_002977244.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003668 hypothetical protein
YP_002977245.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: ret:RHE_CH03433 two-component response regulator protein
YP_002977246.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH03434 two-component sensor histidine kinase protein
YP_002977247.1	PFAM: oxidoreductase molybdopterin binding; KEGG: ret:RHE_CH03435 oxidoreductase protein
YP_002977248.1	KEGG: rec:RHECIAT_CH0003672 hypothetical protein
YP_002977249.1	KEGG: rec:RHECIAT_CH0003673 hypothetical protein
YP_002977250.1	KEGG: ret:RHE_CH03438 hypothetical protein
YP_002977251.1	PFAM: phosphoglycerate mutase; KEGG: rec:RHECIAT_CH0003675 phosphoglycerate mutase protein
YP_002977253.1	KEGG: rec:RHECIAT_CH0003677 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002977254.1	PFAM: phosphate transporter; KEGG: phosphate transporter ; K03306 inorganic phosphate transporter, PiT family
YP_002977255.1	Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation
YP_002977256.1	PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: rec:RHECIAT_CH0003679 xylulose-5-phosphate/fructose-6-phosphate phosphoketolase protein
YP_002977258.1	SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0003681 transcriptional regulator protein, AraC family for p-hydroxybenzoate hydroxylase protein
YP_002977259.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_002977260.1	PFAM: Extracellular ligand-binding receptor; KEGG: ret:RHE_CH03445 branched-chain amino acid ABC transporter, substrate-binding protein
YP_002977261.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003684 probable branched-chain amino acid ABC transporter, permease protein
YP_002977262.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003685 probable branched-chain amino acid ABC transporter, permease protein
YP_002977263.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03448 branched chain amino acid ABC transporter ATP-binding protein
YP_002977264.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03449 branched chain amino acid ABC transporter ATP-binding protein
YP_002977265.1	TIGRFAM: outer membrane adhesin like proteiin; KEGG: ret:RHE_CH03450 autoaggregation protein (adhering protein)
YP_002977267.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002977269.1	KEGG: sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein
YP_002977270.1	KEGG: rec:RHECIAT_CH0003692 hypothetical protein
YP_002977271.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_002977272.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_002977273.1	PFAM: surface antigen msp4 family protein; KEGG: rec:RHECIAT_CH0003695 probable heat resistant agglutinin 1 protein
YP_002977274.1	KEGG: ret:RHE_PE00274 hypothetical protein
YP_002977275.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002977276.1	KEGG: rec:RHECIAT_CH0003697 cell division metalloproteinase protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002977277.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ret:RHE_CH03459 cell cycle protein MesJ/cytosine deaminase-related protein
YP_002977278.1	TIGRFAM: tol-pal system protein YbgF; PFAM: tetratricopeptide TPR_2 repeat protein; KEGG: rec:RHECIAT_CH0003699 hypothetical protein
YP_002977279.1	TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rec:RHECIAT_CH0003700 outer membrane peptidoglycan-associated lipoprotein
YP_002977280.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_002977282.1	KEGG: rec:RHECIAT_CH0003703 outer membrane protein
YP_002977283.1	TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rec:RHECIAT_CH0003704 biopolymer transporter protein, ExbD/TolR family
YP_002977284.1	TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: rec:RHECIAT_CH0003705 biopolymer transporter protein
YP_002977285.1	TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: rec:RHECIAT_CH0003706 probable 4-hydroxybenzoyl-CoA thioesterase protein
YP_002977286.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_CH0003707 sulfoquinovosyl diacylglycerol protein (sulfolipid biosynthesis)
YP_002977287.1	PFAM: glycosyl transferase family 8; KEGG: rec:RHECIAT_CH0003708 glycosyltransferase protein (sulfolipid biosynthesis)
YP_002977288.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0003709 sulfolipid biosynthesis protein
YP_002977289.1	KEGG: msl:Msil_0613 TonB family protein
YP_002977290.1	TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rec:RHECIAT_CH0003710 probable 5-formyltetrahydrofolate cyclo-ligase protein
YP_002977291.1	PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003711 phosphatase protein
YP_002977292.1	KEGG: rec:RHECIAT_CH0003712 hypothetical protein
YP_002977293.1	KEGG: rec:RHECIAT_CH0003713 hypothetical protein
YP_002977294.1	PFAM: protein of unknown function DUF28; KEGG: rec:RHECIAT_CH0003714 hypothetical protein
YP_002977295.1	PFAM: Luciferase-like monooxygenase; KEGG: ret:RHE_CH03476 oxidoreductase protein
YP_002977296.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0003716 probable methyl-accepting chemotaxis protein
YP_002977297.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_002977298.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: ret:RHE_CH03479 regulator protein of stationary/sporulation gene expression
YP_002977299.1	PFAM: PilT protein domain protein; KEGG: ret:RHE_CH03480 nucleic acid-binding protein
YP_002977300.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002977301.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002977302.1	PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003722 probable phosphatase protein
YP_002977303.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0003723 nucleoside hydrolase protein, MutT/NUDIX family
YP_002977304.1	PFAM: DinB family protein; KEGG: ret:RHE_CH03484 hypothetical protein
YP_002977305.1	PFAM: virulence factor family protein; KEGG: ret:RHE_CH03485 acid tolerance and virulence protein
YP_002977306.1	PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: rec:RHECIAT_CH0003726 hypothetical protein
YP_002977307.1	PFAM: DoxX family protein; KEGG: rec:RHECIAT_CH0003727 hypothetical protein
YP_002977308.1	PFAM: MscS Mechanosensitive ion channel; KEGG: rec:RHECIAT_CH0003728 probable small-conductance mechanosensitive channel transmembrane protein
YP_002977309.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_002977310.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0003730 hypothetical protein
YP_002977311.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ret:RHE_CH03490 ArsR family transcriptional regulator
YP_002977312.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0003732 hypothetical protein
YP_002977313.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH03492 UDP-glucose 4-epimerase protein
YP_002977314.1	KEGG: hypothetical protein
YP_002977315.1	PFAM: protein of unknown function DUF710; KEGG: ret:RHE_CH03493 hypothetical protein
YP_002977316.1	KEGG: ret:RHE_CH03494 hypothetical protein
YP_002977317.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002977318.1	KEGG: gap; glyceraldehyde-3-phosphate dehydrogenase, type   I ; K00134 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_002977320.1	KEGG: ret:RHE_CH03497 hypothetical protein
YP_002977321.1	KEGG: rec:RHECIAT_CH0003739 hypothetical protein
YP_002977322.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_002977323.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002977324.1	PFAM: fructose-bisphosphate aldolase class-I; KEGG: ret:RHE_CH03500 fructose-bisphosphate aldolase protein
YP_002977325.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: rec:RHECIAT_CH0003744 phenazine biosynthesisprotein
YP_002977326.1	KEGG: rec:RHECIAT_CH0003745 hypothetical protein
YP_002977327.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH03503 transporter permease protein
YP_002977328.1	PFAM: protein of unknown function DUF1192; KEGG: ret:RHE_CH03504 hypothetical protein
YP_002977329.1	PFAM: protein of unknown function DUF1465; KEGG: ret:RHE_CH03505 hypothetical protein
YP_002977330.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002977331.1	KEGG: rec:RHECIAT_CH0003750 probable multidrug ABC transporter, ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase
YP_002977332.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003751 hypothetical protein
YP_002977333.1	PFAM: protein of unknown function DUF1508; KEGG: rec:RHECIAT_CH0003753 hypothetical protein
YP_002977334.1	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0003754 hypothetical protein
YP_002977335.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: ret:RHE_CH03511 RNA polymerase ECF-subfamily sigma factor
YP_002977336.1	PFAM: OmpA/MotB domain protein; KEGG: ret:RHE_CH03512 hypothetical protein
YP_002977337.1	KEGG: ret:RHE_CH03513 hypothetical protein
YP_002977338.1	PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0003758 myo-inositol-1(or 4)-monophosphatase protein
YP_002977339.1	PFAM: regulatory protein TetR; KEGG: sme:SMa2381 hypothetical protein
YP_002977340.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_1860 short chain dehydrogenase/reductase family oxidoreductase
YP_002977341.1	KEGG: ret:RHE_CH03515 chemotaxis-specific methylesterase protein; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver
YP_002977342.1	KEGG: rec:RHECIAT_CH0003765 methyl-accepting chemotaxis protein O-methyltransferase protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type
YP_002977343.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ret:RHE_CH03517 chemotaxis signal transduction protein
YP_002977344.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0003767 methyl-accepting chemotaxis protein
YP_002977345.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0003768 methyl-accepting chemotaxis protein
YP_002977346.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_CH0003769 methyl accepting chemotaxis protein
YP_002977347.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ret:RHE_CH03521 chemotaxis signal transduction protein
YP_002977348.1	PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: rec:RHECIAT_CH0003771 chemotaxis two-component sensor histidine kinase protein
YP_002977349.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_CH03523 chemotaxis two-component response regulator protein
YP_002977350.1	KEGG: rec:RHECIAT_CH0003773 hypothetical protein
YP_002977351.1	KEGG: ret:RHE_CH03525 chemotaxis sensory transducer protein
YP_002977352.1	PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: rec:RHECIAT_CH0003775 hypothetical protein
YP_002977353.1	catalyzes the formation of thiamine monophosphate from 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate and 4-methyl-5-(2-phosphono-oxyethyl)-thiazole
YP_002977354.1	PFAM: protein of unknown function DUF81; KEGG: ret:RHE_CH03528 transporter, permease protein
YP_002977355.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ret:RHE_CH03529 transcriptional regulator protein
YP_002977356.1	PFAM: protein of unknown function DUF465; KEGG: rec:RHECIAT_CH0003779 hypothetical protein
YP_002977357.1	PFAM: protein of unknown function DUF465; KEGG: rec:RHECIAT_CH0003780 hypothetical protein
YP_002977358.1	KEGG: rec:RHECIAT_CH0003781 phosphoribosylaminoimidazole carboxylase protein, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_002977359.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_002977360.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_002977361.1	PFAM: TPR repeat-containing protein; SMART: tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0003784 hypothetical protein
YP_002977362.1	PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0003785 probable esterase/hydrolase protein
YP_002977363.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase protein
YP_002977364.1	SMART: helix-turn-helix domain protein; KEGG: transcriptional regulator protein
YP_002977365.1	KEGG: rec:RHECIAT_CH0003786 gamma-glutamyltranspeptidase protein; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_002977366.1	PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ret:RHE_CH03537 threonine dehydratase protein
YP_002977367.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SM_b20214 oxidoreductase protein
YP_002977368.1	PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mno:Mnod_1034 transcriptional regulator, AraC family
YP_002977369.1	KEGG: bra:BRADO2096 hypothetical protein
YP_002977370.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH03538 LysR family transcriptional regulator
YP_002977371.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: ret:RHE_CH03539 hypothetical protein
YP_002977372.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_CH0003790 hypothetical protein
YP_002977373.1	KEGG: rec:RHECIAT_CH0003791 hypothetical protein
YP_002977374.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0003792 probable amino-acid efflux protein
YP_002977375.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002977376.1	PFAM: protein of unknown function DUF1036; KEGG: ret:RHE_CH03543 hypothetical protein
YP_002977377.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rec:RHECIAT_CH0003795 amidohydrolase protein
YP_002977378.1	PFAM: protein of unknown function DUF1244; KEGG: ret:RHE_CH03545 hypothetical protein
YP_002977379.1	KEGG: rec:RHECIAT_CH0003797 hypothetical protein
YP_002977380.1	PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: rec:RHECIAT_CH0003800 hypothetical protein
YP_002977381.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: rec:RHECIAT_CH0003801 sigma-54-dependent transcriptional regulator (activator) protein
YP_002977382.1	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase F; KEGG: rec:RHECIAT_CH0003802 oligoendopeptidase F protein
YP_002977383.1	catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine
YP_002977384.1	PFAM: aminotransferase class IV; KEGG: rec:RHECIAT_CH0003804 probable 4-amino-4-deoxychorismate lyase protein
YP_002977385.1	KEGG: sml:Smlt1006 hypothetical protein
YP_002977386.1	PFAM: homospermidine synthase; KEGG: rec:RHECIAT_CH0003806 homospermidine synthase protein
YP_002977387.1	KEGG: ret:RHE_CH03554 outer membrane lipoprotein
YP_002977388.1	KEGG: rec:RHECIAT_CH0003808 hypothetical protein
YP_002977389.1	PFAM: 5'-nucleotidase domain protein; metallophosphoesterase; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: ret:RHE_CH03555 5'-nucleotidase protein
YP_002977390.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_002977391.1	PFAM: band 7 protein; SMART: band 7 protein; KEGG: rec:RHECIAT_CH0003811 membrane protease protein
YP_002977392.1	PFAM: protein of unknown function DUF107; KEGG: rec:RHECIAT_CH0003812 hypothetical protein
YP_002977393.1	KEGG: ret:RHE_CH03559 polysialic acid capsule expression protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein
YP_002977394.1	KEGG: ret:RHE_CH03560 hypothetical protein
YP_002977395.1	KEGG: rec:RHECIAT_CH0003815 UTP--glucose-1-phosphate uridylyltransferase protein; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase
YP_002977396.1	TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: rec:RHECIAT_CH0003816 probable membrane-bound lytic murein transglycosylase protein
YP_002977397.1	PFAM: protein of unknown function DUF459; KEGG: rec:RHECIAT_CH0003817 hypothetical protein
YP_002977398.1	KEGG: rec:RHECIAT_CH0003818 hypothetical protein
YP_002977399.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_002977400.1	PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ret:RHE_CH03566 glutamate synthase large subunit protein
YP_002977401.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rec:RHECIAT_CH0003822 low-specificity L-threonine aldolase protein
YP_002977402.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003823 probable transcriptional regulator protein, LysR family
YP_002977403.1	PFAM: Bile acid:sodium symporter; KEGG: ret:RHE_CH03570 Na+/bile acid cotransporter protein
YP_002977404.1	PFAM: heat shock protein Hsp20; KEGG: ret:RHE_CH03571 molecular chaperone small heat shock protein
YP_002977405.1	PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0003826 lysophospholipase protein
YP_002977406.1	TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: ret:RHE_CH03573 monophosphatase protein
YP_002977407.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rec:RHECIAT_CH0003837 probable N-formylglutamate amidohydrolase protein
YP_002977408.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0003838 probable two-component response regulator protein
YP_002977410.1	KEGG: rec:RHECIAT_CH0003842 hypothetical protein
YP_002977411.1	KEGG: ret:RHE_CH03580 hypothetical protein
YP_002977412.1	PFAM: MgtC/SapB transporter; KEGG: smd:Smed_0348 MgtC/SapB transporter
YP_002977413.1	KEGG: rec:RHECIAT_CH0003844 hypothetical protein
YP_002977414.1	KEGG: rec:RHECIAT_CH0003845 hypothetical protein
YP_002977416.1	PFAM: protein of unknown function DUF475; Integral membrane protein TerC; KEGG: rec:RHECIAT_CH0003846 hypothetical protein
YP_002977417.1	KEGG: smd:Smed_4254 hypothetical protein
YP_002977418.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: ret:RHE_CH03582 hypothetical protein
YP_002977419.1	KEGG: ret:RHE_CH03583 hypothetical protein
YP_002977420.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003850 hypothetical protein
YP_002977421.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003851 probable iron ABC transporter, substrate-binding protein
YP_002977423.1	PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ornithine carbamoyltransferase protein ; K00611 ornithine carbamoyltransferase
YP_002977424.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; tetratricopeptide TPR_2 repeat protein; SMART: tetratricopeptide domain protein; KEGG: ret:RHE_CH03586 adenylate cyclase protein
YP_002977425.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ret:RHE_CH03587 two-component response regulator protein
YP_002977426.1	PFAM: Two-component sensor kinase domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH03588 two-component sensor histidine kinase protein
YP_002977427.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: rec:RHECIAT_CH0003856 transglutaminase-like protein; SNP /replace=C
YP_002977428.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: rec:RHECIAT_CH0003857 hypothetical protein
YP_002977429.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: rec:RHECIAT_CH0003858 transglutaminase-like protein
YP_002977430.1	KEGG: rec:RHECIAT_CH0003859 hypothetical protein
YP_002977431.1	KEGG: rec:RHECIAT_CH0003861 glycogen phosphorylase protein; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_002977432.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_002977433.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_002977434.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_002977435.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_002977436.1	KEGG: rec:RHECIAT_CH0003866 glycosyl hydrolase (glycogen debranching) protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_002977437.1	PFAM: MaoC domain protein dehydratase; KEGG: rec:RHECIAT_CH0003867 dehydratase nodulation protein
YP_002977438.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0003868 probable glyoxylase protein
YP_002977439.1	TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase gamma subunit; KEGG: ret:RHE_CH03600 sarcosine oxidase gamma subunit protein
YP_002977440.1	TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; FAD dependent oxidoreductase; KEGG: ret:RHE_CH03601 sarcosine oxidase alpha subunit protein
YP_002977441.1	TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: ret:RHE_CH03602 sarcosine oxidase delta subunit protein
YP_002977442.1	KEGG: hypothetical protein
YP_002977443.1	TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_CH03603 sarcosine oxidase beta subunit protein
YP_002977444.1	KEGG: ret:RHE_CH03604 hypothetical protein
YP_002977445.1	PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH03605 adenylate cyclase protein
YP_002977446.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002977447.1	PFAM: TPR repeat-containing protein; tetratricopeptide TPR_2 repeat protein; SMART: tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0003877 probable O-linked GlcNAc transferase protein
YP_002977448.1	PFAM: HWE histidine kinase; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH03609 two-component sensor histidine kinase protein
YP_002977449.1	PFAM: protein of unknown function DUF992; KEGG: rec:RHECIAT_CH0003879 hypothetical protein
YP_002977450.1	PFAM: NAD(P) transhydrogenase beta subunit; KEGG: rec:RHECIAT_CH0003880 NAD(P)(+) transhydrogenase (AB-specific) protein, beta subunit
YP_002977451.1	KEGG: rec:RHECIAT_CH0003881 NAD(P)(+) transhydrogenase (AB-specific) protein, alpha subunit
YP_002977452.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rec:RHECIAT_CH0003882 NAD(P)(+) transhydrogenase (AB-specific) protein, alpha subunit
YP_002977453.1	PFAM: aa3 type cytochrome C oxidase subunit IV; KEGG: ret:RHE_CH03614 hypothetical protein
YP_002977454.1	KEGG: ret:RHE_CH03615 hypothetical protein
YP_002977455.1	KEGG: rec:RHECIAT_CH0003885 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein
YP_002977456.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ret:RHE_CH03617 TRAP mannitol/C4-dicarboxylate transporter, permease protein
YP_002977457.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ret:RHE_CH03618 TRAP mannitol/C4-dicarboxylate transporter, permease protein
YP_002977458.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ret:RHE_CH03619 TRAP mannitol/C4-dicarboxylate transporter, substrate-binding protein
YP_002977459.1	PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: rec:RHECIAT_CH0003889 probable glutamine amidotransferase protein
YP_002977460.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: rec:RHECIAT_CH0003890 probable oxidoreductase/dehydrogenase protein
YP_002977461.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_CH03622 LacI family transcription regulator
YP_002977462.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_CH03623 MarR family transcriptional regulator
YP_002977463.1	PFAM: creatininase; KEGG: rec:RHECIAT_CH0003893 creatininase protein
YP_002977464.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: ret:RHE_CH03625 cobalamin synthesis protein P47K family
YP_002977465.1	SMART: WD-40 repeat protein; KEGG: ret:RHE_CH03626 hypothetical protein
YP_002977466.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_4578 GCN5-related N-acetyltransferase (GNAT)
YP_002977467.1	KEGG: rec:RHECIAT_CH0003896 serine acetyltransferase protein; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; transferase hexapeptide repeat containing protein
YP_002977468.1	KEGG: rec:RHECIAT_CH0003897 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002977469.1	PFAM: beta-lactamase; KEGG: sme:SM_b20965 exported enzyme, 6-aminohexanoate-dimer hydrolase protein
YP_002977470.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003898 acetyltransferase protein
YP_002977471.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rec:RHECIAT_CH0003899 probable ornithine decarboxylase protein
YP_002977472.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH03630 LysR family transcriptional regulator
YP_002977473.1	PFAM: protein of unknown function DUF1007; KEGG: rec:RHECIAT_CH0003901 hypothetical protein
YP_002977474.1	PFAM: high-affinity nickel-transporter; KEGG: rec:RHECIAT_CH0003902 ABC transporter, permease protein
YP_002977475.1	KEGG: rec:RHECIAT_CH0003903 hypothetical protein
YP_002977476.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003904 probable acetyltransferase protein
YP_002977477.1	PFAM: protein of unknown function DUF533; KEGG: rec:RHECIAT_CH0003905 hypothetical protein
YP_002977478.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_002977479.1	PFAM: adenylate cyclase; KEGG: ret:RHE_CH03636 hypothetical protein
YP_002977480.1	PFAM: CHAD domain containing protein; KEGG: ret:RHE_CH03637 hypothetical protein
YP_002977481.1	PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: rec:RHECIAT_CH0003909 probable rhodanese-related sulfurtransferase protein
YP_002977482.1	KEGG: ret:RHE_CH03639 sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002977483.1	KEGG: rec:RHECIAT_CH0003911 beta-glucosidase protein; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1
YP_002977484.1	PFAM: DoxX family protein; KEGG: rec:RHECIAT_CH0003912 hypothetical conserved membrane protein
YP_002977485.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH03642 oxidoreductase protein
YP_002977486.1	PFAM: xylose isomerase; AP endonuclease 2 domain protein; KEGG: rec:RHECIAT_CH0003914 xylose isomerase domain protein
YP_002977487.1	KEGG: rec:RHECIAT_CH0003915 probable sugar ABC transporter, substrate-binding protein
YP_002977488.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03645 sugar ABC transporter, permease protein
YP_002977489.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03646 sugar ABC transporter, ATP-binding protein
YP_002977490.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ret:RHE_CH03647 LacI family transcription regulator
YP_002977491.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_002977492.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0003920 xylulose kinase protein
YP_002977493.1	PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ret:RHE_CH03650 LacI family transcription regulator
YP_002977494.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0003922 probable multidrug efflux transporter, permease protein
YP_002977495.1	PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0003923 protein secretion protein, HlyD family
YP_002977496.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH03653 TetR family transcriptional regulator
YP_002977497.1	PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0003925 probable transcriptional regulator protein; SNP /replace=T
YP_002977498.1	PFAM: Integral membrane protein TerC; KEGG: ret:RHE_CH03655 TerC family transporter protein
YP_002977499.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002977500.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_002977501.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cak:Caul_2398 short-chain dehydrogenase/reductase SDR
YP_002977502.1	PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cak:Caul_2399 AraC family transcriptional regulator
YP_002977503.1	KEGG: rec:RHECIAT_CH0003929 hypothetical protein
YP_002977504.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0003930 probable transcriptional regulator protein, LysR family
YP_002977505.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH03660 spermidine/putrescine ABC transporter, substrate-binding protein
YP_002977506.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003932 probable spermidine/putrescine ABC transporter, ATP-binding protein
YP_002977507.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003933 probable spermidine/putrescine ABC transporter, permease protein
YP_002977508.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003934 probable spermidine/putrescine ABC transporter, permease protein
YP_002977509.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_002977510.1	PFAM: protein of unknown function DUF1328; KEGG: rec:RHECIAT_CH0003936 hypothetical protein
YP_002977511.1	KEGG: hypothetical protein
YP_002977512.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: two-component sensor histidine kinase protein
YP_002977513.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: two-component response regulator protein
YP_002977516.1	PFAM: DoxX family protein; KEGG: rec:RHECIAT_CH0003937 hypothetical protein
YP_002977517.1	PFAM: protein of unknown function DUF1345; KEGG: rec:RHECIAT_CH0003938 hypothetical protein
YP_002977518.1	KEGG: ret:RHE_CH03667 transaldolase B; TIGRFAM: transaldolase; PFAM: transaldolase
YP_002977519.1	PFAM: sugar-binding domain protein; KEGG: rec:RHECIAT_CH0003941 probable transcriptional regulator protein
YP_002977520.1	KEGG: rec:RHECIAT_CH0003942 hypothetical protein
YP_002977521.1	KEGG: rec:RHECIAT_CH0003943 probable 6-O-methylguanine-DNA methyltransferase (DNA repair) protein; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type
YP_002977522.1	KEGG: ret:RHE_CH03670 hypothetical protein
YP_002977523.1	KEGG: rec:RHECIAT_CH0003945 endonuclease III protein; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein
YP_002977524.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH03672 TetR family transcriptional regulator
YP_002977525.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH03673 glyoxalase/bleomycin resistance-like protein
YP_002977526.1	role in sulfur assimilation
YP_002977527.1	PFAM: helix-turn-helix protein RpiR; KEGG: rec:RHECIAT_CH0003949 transcriptional regulator protein
YP_002977528.1	TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0003950 ribulokinase protein
YP_002977529.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0003951 probable hydrolase phosphatase protein
YP_002977530.1	PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: rec:RHECIAT_CH0003952 mannitol 2-dehydrogenase protein
YP_002977531.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_CH03679 sorbitol/mannitol ABC transporter, ATP-binding protein
YP_002977532.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH03680 sorbitol/mannitol ABC transporter, permease protein
YP_002977533.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003955 sorbitol/mannitol ABC transporter, permease protein
YP_002977534.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003956 sorbitol/mannitol ABC transporter, substrate-binding protein
YP_002977535.1	PFAM: sugar-binding domain protein; KEGG: rec:RHECIAT_CH0003957 sorbitol/mannitol operon transcriptional regulator protein
YP_002977536.1	PFAM: Exopolysaccharide synthesis ExoD; KEGG: ret:RHE_CH03684 exopolysaccharide biosynthesis protein
YP_002977537.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0003959 transcriptional regulator protein, ROK family
YP_002977538.1	PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: ret:RHE_CH03686 beta-N-acetylhexosaminidase protein
YP_002977539.1	PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003961 multidrug efflux transporter protein
YP_002977540.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0003962 multidrug efflux transporter protein
YP_002977541.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0003963 transcriptional regulator protein, TetR family
YP_002977542.1	PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0003964 osmotically inducible protein
YP_002977543.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH03691 short chain dehydrogenase
YP_002977544.1	PFAM: Aldose 1-epimerase; KEGG: rec:RHECIAT_CH0003966 aldose-1-epimerase protein
YP_002977545.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_002977546.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_002977547.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0003969 probable sugar ABC transporter, substrate-binding protein
YP_002977548.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_CH03696 GntR family transcriptional regulator
YP_002977549.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_CH03697 galactonate dehydratase protein
YP_002977550.1	PFAM: DoxX family protein; KEGG: ret:RHE_CH03698 hypothetical protein
YP_002977551.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002977552.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH03700 adenylate cyclase protein
YP_002977553.1	SMART: regulatory protein LacI; KEGG: rec:RHECIAT_CH0003975 transcriptional regulator protein
YP_002977554.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: ret:RHE_CH03702 hypothetical protein
YP_002977555.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0003977 oxidoreductase protein
YP_002977556.1	PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: ret:RHE_CH03704 gluconolactonase protein
YP_002977557.1	PFAM: protein of unknown function DUF1037; KEGG: mmw:Mmwyl1_0027 hypothetical protein
YP_002977558.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sugar ABC transporter
YP_002977559.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_0352 binding-protein-dependent transport systems inner membrane component
YP_002977560.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_0362 binding-protein-dependent transport systems inner membrane component
YP_002977561.1	PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_3812 extracellular solute-binding protein family 1
YP_002977562.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:bll6385 oxidoreductase
YP_002977563.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: mes:Meso_1929 transcriptional regulator, LacI family
YP_002977564.1	PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: rec:RHECIAT_CH0003979 beta-D-galactosidase protein
YP_002977565.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003980 probable sugar ABC transporter, ATP-binding protein
YP_002977566.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH03707 sugar ABC transporter, permease protein
YP_002977567.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003982 probable sugar ABC transporter, permease protein; SNP /replace=G
YP_002977568.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003983 probable sugar ABC transporter, substrate-binding protein
YP_002977569.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_CH03710 LacI family transcriptional regulator
YP_002977570.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rec:RHECIAT_CH0003984 succinoglycan biosynthesis transcriptional regulator protein
YP_002977571.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: ret:RHE_CH03712 6-pyruvoyl tetrahydropterin synthase protein
YP_002977572.1	TIGRFAM: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; PFAM: Radical SAM domain protein; KEGG: rec:RHECIAT_CH0003986 organic-radical-activating protein
YP_002977573.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0003987 adenylate cyclase protein
YP_002977574.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_002977575.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002977576.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_002977577.1	TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0003991 glutaredoxin protein
YP_002977578.1	TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH03719 heavy metal-transporting ATPase protein
YP_002977579.1	PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ret:RHE_CH03720 MerR family transcriptional regulator
YP_002977580.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: ret:RHE_CH03721 dehydrogenase protein
YP_002977581.1	KEGG: rec:RHECIAT_CH0003995 peptide-methionine (R)-S-oxide reductase protein; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B
YP_002977582.1	PFAM: GAF domain protein; helix-turn-helix Fis-type; KEGG: rec:RHECIAT_CH0003996 probable transcriptional regulator protein
YP_002977583.1	PFAM: aldehyde Dehydrogenase; KEGG: rec:RHECIAT_CH0003997 aldehyde dehydrogenase (NAD(+)) protein
YP_002977584.1	PFAM: protein of unknown function DUF779; KEGG: rec:RHECIAT_CH0003998 hypothetical protein
YP_002977585.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rec:RHECIAT_CH0003999 intracellular protease protein, PfpI family
YP_002977586.1	KEGG: ret:RHE_CH03726 hypothetical protein
YP_002977587.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH03727 3-oxoacyl-[acyl-carrier protein] reductase protein
YP_002977588.1	PFAM: sodium/calcium exchanger membrane region; KEGG: rec:RHECIAT_CH0004002 Ca2+/H+ antiporter protein
YP_002977589.1	KEGG: rec:RHECIAT_CH0004003 hypothetical protein
YP_002977590.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_CH0004005 multidrug efflux protein
YP_002977591.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0004006 multidrug efflux protein, Acr/RND family
YP_002977592.1	KEGG: rec:RHECIAT_CH0004009 hypothetical protein
YP_002977593.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PC0000747 methyl-accepting chemotaxis protein
YP_002977594.1	PFAM: peptidase M23; KEGG: rec:RHECIAT_CH0004020 peptidase protein, M23/M37 family
YP_002977595.1	KEGG: rec:RHECIAT_CH0004021 chaperone heat-shock protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase
YP_002977596.1	KEGG: rec:RHECIAT_CH0004022 hypothetical protein
YP_002977597.1	KEGG: ret:RHE_CH03755 protoporphyrinogen oxidase (methyltransferase) protein; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; methyltransferase type 12
YP_002977598.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002977599.1	KEGG: rec:RHECIAT_CH0004025 phosphoenolpyruvate--protein phosphotransferase protein (enzyme I of the phosphotransferase system); TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; GAF domain protein; SMART: GAF domain protein
YP_002977600.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_002977601.1	Involved in ubiquinone biosynthesis
YP_002977602.1	PFAM: protein of unknown function DUF1178; KEGG: rec:RHECIAT_CH0004028 hypothetical protein
YP_002977603.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ret:RHE_CH03761 amidohydrolase protein
YP_002977604.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0004030 glutaredoxin protein
YP_002977605.1	KEGG: rec:RHECIAT_CH0004031 competence protein F (phosphoribosyltransferase protein)
YP_002977606.1	KEGG: rec:RHECIAT_CH0004032 methyltransferase protein
YP_002977607.1	PFAM: Flp/Fap pilin component; KEGG: rec:RHECIAT_CH0004033 pilus component protein
YP_002977608.1	KEGG: ret:RHE_CH03765 hypothetical protein
YP_002977609.1	TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH03766 NTP pyrophosphohydrolase protein
YP_002977610.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004036 acetyltransferase protein
YP_002977611.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_002977612.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rec:RHECIAT_CH0004038 peptidyl-prolyl cis-trans isomerase D signal peptide protein
YP_002977613.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002977614.1	PFAM: polysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0004040 polysaccharide export related protein
YP_002977615.1	KEGG: ret:RHE_CH03772 hypothetical protein
YP_002977616.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rec:RHECIAT_CH0004042 acetyl-CoA synthetase protein
YP_002977617.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_CH03774 oxidoreductase (aldo/keto reductase) protein
YP_002977618.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH03775 TetR family transcriptional regulator
YP_002977619.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0004046 probable monocarboxylate transporter, permease protein
YP_002977620.1	KEGG: rec:RHECIAT_PC0000828 hypothetical protein
YP_002977621.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_0304 transcriptional regulator, LysR family
YP_002977622.1	KEGG: rec:RHECIAT_CH0004048 hypothetical protein
YP_002977623.1	KEGG: rec:RHECIAT_CH0004049 hypothetical protein
YP_002977624.1	PFAM: sodium/hydrogen exchanger; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: rec:RHECIAT_CH0004050 probable cation transporter protein
YP_002977625.1	KEGG: rec:RHECIAT_CH0004051 hypothetical protein
YP_002977626.1	KEGG: ret:RHE_CH03782 transmembrane-associated alkaline phosphatase protein
YP_002977627.1	KEGG: rec:RHECIAT_CH0004053 hypothetical protein
YP_002977628.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rec:RHECIAT_CH0004054 endonuclease protein
YP_002977629.1	PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: rec:RHECIAT_CH0004055 DNA-3-methyladenine glycosidase II protein
YP_002977630.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_002977631.1	TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: rec:RHECIAT_CH0004057 ribonuclease protein
YP_002977632.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH03788 short chain dehydrogenase
YP_002977633.1	KEGG: rec:RHECIAT_CH0004059 hypothetical protein
YP_002977634.1	TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ret:RHE_CH03790 hypothetical protein
YP_002977635.1	PFAM: Rhomboid family protein; KEGG: ret:RHE_CH03791 hypothetical protein
YP_002977636.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ret:RHE_PF00405 electron transport flavoprotein, beta subunit
YP_002977637.1	PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: electron transfer flavoprotein alpha-subunit alpha-etf flavoprotein ; K03522 electron transfer flavoprotein alpha subunit
YP_002977638.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_002977639.1	PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rec:RHECIAT_CH0004065 thiol:disulfide interchange protein
YP_002977640.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_002977641.1	KEGG: rec:RHECIAT_CH0004067 hypothetical protein
YP_002977642.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rec:RHECIAT_CH0004068 diaminopimelate decarboxylase protein
YP_002977643.1	KEGG: rec:RHECIAT_CH0004069 hypothetical protein
YP_002977644.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_CH03799 two-component response regulator protein
YP_002977645.1	KEGG: rec:RHECIAT_CH0004071 hypoxanthine phosphoribosyltransferase protein; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_002977646.1	KEGG: ret:RHE_CH03801 hypothetical protein
YP_002977647.1	KEGG: rec:RHECIAT_CH0004073 cell division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: AAA ATPase
YP_002977648.1	KEGG: ret:RHE_CH03803 cell division protein
YP_002977649.1	PFAM: protein of unknown function DUF218; KEGG: rec:RHECIAT_CH0004075 hypothetical protein
YP_002977650.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rec:RHECIAT_CH0004076 1-acylglycerol-3-phosphate O-acyltransferase protein
YP_002977651.1	PFAM: ChaC family protein; AIG2 family protein; KEGG: rec:RHECIAT_CH0004077 cation transporter protein
YP_002977652.1	KEGG: ret:RHE_CH03807 hypothetical protein
YP_002977653.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH03808 acetyltransferase protein
YP_002977654.1	dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate
YP_002977655.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002977656.1	PFAM: methyltransferase type 11; KEGG: rec:RHECIAT_CH0004082 methyltransferase protein
YP_002977657.1	KEGG: ret:RHE_CH03812 hydroxyacylgluthatione hydrolase protein; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase
YP_002977658.1	PFAM: protein of unknown function DUF985; KEGG: rec:RHECIAT_CH0004084 hypothetical protein
YP_002977659.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH03814 hypothetical protein
YP_002977660.1	KEGG: ret:RHE_CH03815 hypothetical protein
YP_002977661.1	required for 70S ribosome assembly
YP_002977662.1	TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: ret:RHE_CH03817 hypothetical protein
YP_002977663.1	KEGG: rec:RHECIAT_CH0004090 hypothetical protein
YP_002977664.1	KEGG: ret:RHE_CH03819 hypothetical protein
YP_002977665.1	KEGG: rec:RHECIAT_CH0004092 cobalamin biosynthesis protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A
YP_002977666.1	KEGG: ret:RHE_CH03821 cobalamin biosynthesis protein; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5
YP_002977667.1	PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_CH0004094 molecular chaperone protein DnaJ
YP_002977668.1	PFAM: BolA family protein; KEGG: bolA; stress induced morphogen ; K05527 BolA protein
YP_002977669.1	PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: rec:RHECIAT_CH0004095 hemolysin protein
YP_002977670.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_002977671.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002977672.1	KEGG: hypothetical signal peptide protein
YP_002977673.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_002977674.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_002977675.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0004100 hypothetical protein
YP_002977676.1	PFAM: SirA family protein; KEGG: rec:RHECIAT_CH0004101 hypothetical protein
YP_002977677.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_CH0004102 probable cobalamin synthesis protein
YP_002977678.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: rec:RHECIAT_CH0004103 D-alanyl-D-alanine carboxypeptidase protein
YP_002977679.1	KEGG: rec:RHECIAT_CH0004104 probable amidohydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002977680.1	PFAM: acyltransferase; KEGG: ret:RHE_CH00333 acetyltransferase protein
YP_002977681.1	KEGG: rec:RHECIAT_CH0004116 hypothetical protein
YP_002977682.1	KEGG: rec:RHECIAT_CH0004117 hypothetical protein
YP_002977684.1	PFAM: transport-associated; KEGG: rec:RHECIAT_CH0004118 hypothetical protein
YP_002977685.1	KEGG: rec:RHECIAT_CH0004119 hypothetical protein
YP_002977686.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002977687.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_CH03840 sugar ABC transporter, ATP-binding protein
YP_002977688.1	PFAM: protein of unknown function DUF1680; KEGG: rec:RHECIAT_CH0004122 hypothetical protein
YP_002977689.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH03842 sugar ABC transporter, permease protein
YP_002977690.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0004124 sugar ABC transporter, permease protein
YP_002977691.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH03844 sugar ABC transporter, substrate-binding protein
YP_002977692.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_CH03845 LacI family transcriptional regulator
YP_002977693.1	catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine
YP_002977694.1	PFAM: 17 kDa surface antigen; KEGG: rec:RHECIAT_CH0004128 hypothetical protein
YP_002977695.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rec:RHECIAT_CH0004129 outer membrane protein, protective antigen
YP_002977696.1	PFAM: protein of unknown function DUF490; KEGG: rec:RHECIAT_CH0004130 hypothetical protein
YP_002977697.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH03850 transcriptional regulator protein
YP_002977698.1	TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: ret:RHE_CH03851 arginase protein
YP_002977699.1	TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: ret:RHE_CH03852 ornithine--oxo-acid transaminase
YP_002977700.1	PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ret:RHE_CH03853 chemotaxis signal transduction protein
YP_002977701.1	KEGG: rec:RHECIAT_CH0004135 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; PAC repeat-containing protein
YP_002977702.1	PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_343 hypothetical protein
YP_002977703.1	KEGG: rec:RHECIAT_CH0004136 formate dehydrogenase protein, delta subunit
YP_002977704.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_002977705.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: ret:RHE_CH03857 formate dehydrogenase, alpha subunit protein; SNP /replace=T
YP_002977706.1	PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: ret:RHE_CH03858 formate dehydrogenase, beta subunit protein
YP_002977707.1	catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor
YP_002977708.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_CH03860 LysR family transcriptional regulator
YP_002977709.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0004142 probable transcriptional regulator protein, ArsR family
YP_002977710.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0004143 oxidoreductase protein
YP_002977711.1	KEGG: rec:RHECIAT_CH0004144 redox-sensitive transcriptional regulator-activator protein; TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR
YP_002977712.1	PFAM: NADPH-dependent FMN reductase; KEGG: reductase protein
YP_002977713.1	PFAM: YKOF domain protein; KEGG: mlo:mll1759 hypothetical protein
YP_002977714.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0004145 nitrate/sulfonate/bicarbonate ABC transporter, permease protein
YP_002977715.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03865 nitrate/sulfonate/bicarbonate ABC transporter, ATP-binding protein
YP_002977716.1	PFAM: NMT1/THI5 like domain protein; KEGG: ret:RHE_CH03866 nitrate/sulfonate/bicarbonate ABC transporter, substrate-binding protein
YP_002977717.1	PFAM: acyltransferase; KEGG: rec:RHECIAT_CH0004148 acyltransferase protein
YP_002977718.1	PFAM: sugar transferase; KEGG: ret:RHE_CH03868 exopolysaccharide production protein
YP_002977719.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_002977720.1	KEGG: cak:Caul_4736 hypothetical protein
YP_002977721.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002977722.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_002977723.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002977724.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_002977725.1	KEGG: ret:RHE_CH03874 hypothetical protein
YP_002977726.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_002977727.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: oligopeptide ABC transporter ; K02032 peptide/nickel transport system ATP-binding protein
YP_002977728.1	KEGG: oligopeptide ABC transporter ; K02031 peptide/nickel   transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase
YP_002977729.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00192 oligopeptide ABC transporter, permease protein
YP_002977730.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000149 ABC transporter, permease protein
YP_002977731.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PE00194 oligopeptide ABC transporter, ATP-binding protein
YP_002977732.1	PFAM: glycoside hydrolase family 39; KEGG: sus:Acid_3646 glycoside hydrolase family protein
YP_002977733.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mlr2114 transcriptional regulator
YP_002977734.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pol:Bpro_3819 oxidoreductase-like
YP_002977735.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_002977736.1	PFAM: amidohydrolase 2; KEGG: mes:Meso_3756 amidohydrolase 2
YP_002977737.1	PFAM: dihydrodipicolinate synthetase; KEGG: ret:RHE_CH03876 dihydrodipicolinate synthase protein
YP_002977738.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004159 acetyltransferase protein, GNAT family
YP_002977739.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rec:RHECIAT_CH0004160 acyltransferase protein
YP_002977740.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_002977741.1	PFAM: GumN family protein; KEGG: rec:RHECIAT_CH0004162 hypothetical protein
YP_002977743.1	PFAM: cytochrome B561; KEGG: rec:RHECIAT_CH0004163 probable cytochrome b561 protein
YP_002977744.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002977745.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH03884 oxidoreductase protein
YP_002977746.1	KEGG: rec:RHECIAT_CH0004166 hypothetical protein
YP_002977747.1	KEGG: ret:RHE_CH03886 hypothetical protein
YP_002977748.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_002977749.1	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0004169 hypothetical protein
YP_002977750.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_002977751.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_002977752.1	KEGG: rec:RHECIAT_CH0004172 hypothetical protein
YP_002977753.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_002977754.1	Catalyzes the reversible oxidation of malate to oxaloacetate
YP_002977755.1	PFAM: AFG1-family ATPase; KEGG: rec:RHECIAT_CH0004175 ATP-binding protein
YP_002977756.1	PFAM: outer membrane lipoprotein omp19; KEGG: rec:RHECIAT_CH0004176 outer membrane lipoprotein
YP_002977757.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_002977758.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_002977759.1	TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rec:RHECIAT_CH0004180 succinate dehydrogenase protein, membrane anchor subunit
YP_002977760.1	TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rec:RHECIAT_CH0004181 succinate dehydrogenase protein, cytochrome b subunit
YP_002977761.1	KEGG: rec:RHECIAT_CH0004182 hypothetical protein
YP_002977762.1	PFAM: endoribonuclease L-PSP; KEGG: mpo:Mpop_4502 endoribonuclease L-PSP
YP_002977763.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_2019 transcriptional regulator, LysR family
YP_002977764.1	PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mlr6534 ABC transporter, polyamine transport protein, ATP-binding protein
YP_002977765.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2723 ABC transporter permease protein
YP_002977766.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1970 ABC transporter permease protein 2
YP_002977767.1	KEGG: azc:AZC_1637 ABC transporter substrate binding protein
YP_002977768.1	TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_2025 agmatinase
YP_002977769.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: mlo:mlr4897 amino acid ABC transporter, periplasmic binding protein
YP_002977770.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr4898 amino acid ABC transporter, permease protein
YP_002977771.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr4899 amino acid ABC transporter, permease protein
YP_002977772.1	catalyzes the formation of L-proline from L-ornithine
YP_002977773.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nocR; transcriptional regulator LysR family
YP_002977774.1	TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; SNP /replace=A
YP_002977775.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: 3-polyprenyl-4-hydroxybenzoate decarboxylase ; K03186   3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX
YP_002977776.1	PFAM: extracellular solute-binding protein family 5; KEGG: dppA; ABC transporter substrate binding protein (dipeptide) ; K02035 peptide/nickel transport system substrate-binding protein
YP_002977777.1	KEGG: carboxyphosphonoenolpyruvate phosphonomutase; SNP /replace=G
YP_002977778.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dppB; ABC transporter membrane spanning protein (dipeptide) ; K02033 peptide/nickel transport system permease protein
YP_002977779.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dppC; ABC transporter membrane spanning protein (dipeptide)
YP_002977780.1	KEGG: ABC transporter nucleotide binding/ATPase protein   (oligopeptide) ; K02031 peptide/nickel transport system   ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase
YP_002977781.1	KEGG: ABC transporter nucleotide binding/ATPase protein   (oligopeptide) ; K02032 peptide/nickel transport system   ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase
YP_002977782.1	KEGG: hypothetical protein
YP_002977783.1	KEGG: allantoinase protein
YP_002977784.1	KEGG: hutH; histidine ammonia-lyase ; K01745 histidine   ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase
YP_002977785.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_002977786.1	PFAM: amidohydrolase; KEGG: ade; adenine deaminase ; K01486 adenine deaminase
YP_002977787.1	KEGG: rec:RHECIAT_CH0000226 hypothetical protein
YP_002977788.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: C4-dicarboxylate-binding protein
YP_002977789.1	KEGG: C4-dicarboxylate transport system
YP_002977790.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: C4-dicarboxylate transport system
YP_002977791.1	PFAM: aminotransferase class-III; KEGG: 4-aminobutyrate aminotransferase protein ; K01845 glutamate-1-semialdehyde 2,1-aminomutase
YP_002977792.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: psp:PSPPH_2772 LysR family transcriptional regulator
YP_002977793.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: mmw:Mmwyl1_1615 glycoside hydrolase family 3 protein
YP_002977795.1	KEGG: rec:RHECIAT_CH0004183 methyltransferase protein
YP_002977796.1	PFAM: protein of unknown function DUF55; KEGG: rec:RHECIAT_CH0004184 hypothetical protein
YP_002977797.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_002977798.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002977799.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002977800.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_002977801.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane
YP_002977802.1	KEGG: rec:RHECIAT_CH0004190 hypothetical protein
YP_002977803.1	PFAM: HemY domain protein; KEGG: ret:RHE_CH03907 hypothetical protein
YP_002977804.1	PFAM: protein of unknown function DUF1332; KEGG: ret:RHE_CH03908 hypothetical protein
YP_002977805.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_002977806.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0004194 permease protein
YP_002977807.1	PFAM: protein of unknown function YGGT; KEGG: rec:RHECIAT_CH0004195 hypothetical conserved membrane protein
YP_002977808.1	PFAM: protein of unknown function DUF167; KEGG: ret:RHE_CH03912 hypothetical protein
YP_002977809.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_002977810.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004198 acetyltransferase protein
YP_002977811.1	TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: rec:RHECIAT_CH0004199 GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A) protein
YP_002977812.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: rec:RHECIAT_CH0004200 peptidyl-dipeptidase protein
YP_002977813.1	KEGG: ret:RHE_CH03917 hypothetical protein
YP_002977814.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0004202 amino acid efflux protein
YP_002977815.1	PFAM: transcriptional regulator domain protein; SMART: AAA ATPase; KEGG: mlo:mlr6681 transcriptional regulator
YP_002977816.1	PFAM: OsmC family protein; KEGG: mlo:mll6679 stress-induced protein
YP_002977817.1	PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: bja:bll6264 hydrolase
YP_002977818.1	PFAM: OsmC family protein; KEGG: bja:bll4012 organic hydroperoxide resistance protein
YP_002977819.1	KEGG: ret:RHE_CH02543 adenylate cyclase protein
YP_002977820.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_002977821.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_CH0004208 probable oxidoreductase protein
YP_002977822.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0004209 amino acid efflux protein, LysE family
YP_002977823.1	KEGG: bja:bll6557 hypothetical protein
YP_002977824.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03927 ABC transporter, ATP-binding protein
YP_002977825.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0004211 sugar ABC transporter, permease protein
YP_002977826.1	PFAM: protein of unknown function DUF534; KEGG: ret:RHE_CH03929 ABC transporter, substrate-binding protein
YP_002977827.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rec:RHECIAT_CH0004213 hypothetical protein
YP_002977828.1	KEGG: ret:RHE_CH03931 hypothetical protein
YP_002977829.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rec:RHECIAT_CH0004215 probable RNA polymerase sigma factor protein (sigma-70), ECF family
YP_002977830.1	PFAM: protein of unknown function DUF1232; KEGG: rec:RHECIAT_CH0004216 hypothetical protein
YP_002977831.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_002977832.1	PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: ret:RHE_CH03935 tyrosine phosphatase protein
YP_002977833.1	TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: rec:RHECIAT_CH0004219 2'-5' RNA ligase protein
YP_002977834.1	PFAM: lipolytic protein G-D-S-L family; KEGG: rec:RHECIAT_CH0004220 probable acyl-CoA thioesterase protein
YP_002977835.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03938 ABC transporter, ATP-binding protein (involved in lysophospholipase L1 biosynthesis)
YP_002977836.1	PFAM: protein of unknown function DUF214; KEGG: ret:RHE_CH03939 ABC transporter, permease protein (involved in lysophospholipase L1 biosynthesis)
YP_002977837.1	PFAM: protein of unknown function UPF0005; KEGG: rec:RHECIAT_CH0004223 hypothetical conserved membrane protein
YP_002977838.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH03941 phosphinothricin N-acetyltransferase (antibiotic resistance) protein
YP_002977839.1	KEGG: rec:RHECIAT_CH0004225 hypothetical protein
YP_002977840.1	PFAM: protein of unknown function DUF1223; KEGG: ret:RHE_CH03943 hypothetical protein
YP_002977841.1	Catalyzes the conversion of citrate to isocitrate
YP_002977842.1	ATP-binding protein; required for proper cytochrome C maturation
YP_002977843.1	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C-type biogenesis protein CcmB; KEGG: rec:RHECIAT_CH0004229 heme ABC transporter, permease protein (involved in cytochrome C biogenesis)
YP_002977844.1	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: ret:RHE_CH03948 heme ABC transporter, permease protein (involved in cytochrome-c biogenesis)
YP_002977845.1	TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: rec:RHECIAT_CH0004231 probable heme transporter protein (involved in cytochrome C biogenesis)
YP_002977846.1	TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ret:RHE_CH03950 thiol disulfide interchange protein (involved in cytochrome-c biogenesis)
YP_002977847.1	KEGG: rec:RHECIAT_CH0004233 hypothetical protein
YP_002977848.1	Involved in cell division; probably involved in intracellular septation
YP_002977849.1	KEGG: ret:RHE_CH03953 cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_002977850.1	KEGG: rec:RHECIAT_CH0004236 methylase protein (RNA modification enzyme), MiaB family; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_002977851.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_002977852.1	KEGG: ret:RHE_CH03956 hypothetical protein
YP_002977853.1	KEGG: rec:RHECIAT_CH0004239 signal recognition particle GTP-binding protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_002977854.1	catalyzes the interconversion of chorismate to prephenate
YP_002977855.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002977856.1	Essential for efficient processing of 16S rRNA
YP_002977857.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002977858.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002977859.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: rec:RHECIAT_CH0004245 amino acid ABC transporter, substrate-binding protein
YP_002977860.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0004246 amino acid ABC transporter, permease protein
YP_002977862.1	KEGG: met:M446_6749 hypothetical protein
YP_002977863.1	KEGG: atu:Atu8028 hypothetical protein
YP_002977864.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_002977865.1	KEGG: rec:RHECIAT_CH0004248 transporter protein
YP_002977866.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0004249 probable 2,5-didehydrogluconate reductase protein
YP_002977867.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH03967 hypothetical protein
YP_002977868.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ret:RHE_CH03968 two-component response regulator protein
YP_002977869.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: ret:RHE_CH03969 cAMP-dependent kinase protein
YP_002977870.1	TIGRFAM: exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0004253 exodeoxyribonuclease III protein
YP_002977871.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rec:RHECIAT_CH0004254 outer membrane lipoproteins carrier protein
YP_002977872.1	PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004255 cell division protein; SNP /replace=C
YP_002977873.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rec:RHECIAT_CH0004256 ammonium transporter protein
YP_002977874.1	PFAM: nitrogen regulatory protein P-II; KEGG: rec:RHECIAT_CH0004257 nitrogen regulatory protein P-II
YP_002977875.1	TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: rec:RHECIAT_CH0004258 acyl-CoA thioesterase II protein
YP_002977876.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ret:RHE_CH03976 2-octaprenyl-6-methoxyphenyl hydroxylase
YP_002977877.1	PFAM: protein of unknown function DUF343; KEGG: rec:RHECIAT_CH0004260 hypothetical protein
YP_002977878.1	PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: ret:RHE_CH03978 ATP-dependent protease La 2 protein
YP_002977879.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ret:RHE_CH03979 thioredoxin protein
YP_002977880.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rec:RHECIAT_CH0004263 hypothetical protein
YP_002977881.1	PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: ret:RHE_CH04060 hypothetical protein
YP_002977882.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ansR; L-asparagine operon transcriptional regulator protein (repressor)
YP_002977883.1	PFAM: extracellular solute-binding protein family 5; KEGG: dipeptide ABC transporter ; K02035 peptide/nickel transport system substrate-binding protein
YP_002977884.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: peptide ABC transporter ; K02033 peptide/nickel transport system permease protein
YP_002977885.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dppCf; dipeptide ABC transporter ; K02034 peptide/nickel transport system permease protein
YP_002977886.1	PFAM: gamma-glutamyltranspeptidase; KEGG: ggt; gamma-glutamyltransferase ; K00681 gamma-glutamyltranspeptidase
YP_002977887.1	PFAM: protein of unknown function DUF1028; KEGG: hypothetical protein
YP_002977888.1	PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase; KEGG: peptide ABC transporter ; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
YP_002977889.1	KEGG: rec:RHECIAT_CH0004347 hypothetical protein
YP_002977890.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_CH04058 iron(III) ABC transporter, ATP-binding protein
YP_002977891.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0004345 iron(III) ABC transporter, permease protein
YP_002977892.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH04056 iron(III) ABC transporter, substrate-binding protein
YP_002977893.1	PFAM: aldehyde Dehydrogenase; KEGG: rec:RHECIAT_CH0004343 probable aldehyde dehydrogenase protein
YP_002977894.1	PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0004342 probable oxidoreductase protein
YP_002977895.1	PFAM: protein of unknown function DUF1338; KEGG: rec:RHECIAT_CH0004341 hypothetical protein
YP_002977896.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0004340 probable transcriptional regulator protein, LysR family
YP_002977897.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH04051 transcriptional regulator protein
YP_002977898.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH04050 cellobiosyl-diphosphoprenyl alpha-mannosyltransferase protein
YP_002977899.1	PFAM: polysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0004337 teichuronic acid biosynthesis protein
YP_002977900.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH04048 glycosyltransferase protein
YP_002977901.1	PFAM: glycoside hydrolase family 2 sugar binding; KEGG: ret:RHE_CH04047 beta-mannosidase protein
YP_002977902.1	PFAM: Domain of unknown function DUF1839; KEGG: ret:RHE_CH04046 hypothetical protein
YP_002977903.1	KEGG: rec:RHECIAT_CH0004334 serine--tRNA ligase protein
YP_002977904.1	PFAM: acyl-CoA dehydrogenase; KEGG: rec:RHECIAT_CH0004333 acyl-CoA dehydrogenase protein
YP_002977905.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_002977906.1	KEGG: ret:RHE_CH04042 L-lysine 2,3-aminomutase protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein
YP_002977907.1	PFAM: tRNA synthetase class II (D K and N); KEGG: ret:RHE_CH04041 lysyl-tRNA synthetase protein
YP_002977908.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002977909.1	PFAM: sugar isomerase (SIS); KEGG: ret:RHE_CH04038 hypothetical protein
YP_002977910.1	KEGG: rec:RHECIAT_CH0004326 N-acetylglucosamine-6-phosphate deacetylase protein; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase
YP_002977911.1	PFAM: sugar isomerase (SIS); KEGG: ret:RHE_CH04036 glucosamine--fructose-6-phosphate aminotransferase protein
YP_002977912.1	PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0004324 probable transcriptional regulator protein
YP_002977913.1	PFAM: Aldose 1-epimerase; KEGG: rec:RHECIAT_CH0004323 aldose-1-epimerase protein
YP_002977914.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_002977915.1	PFAM: ABC transporter; ABC transporter; SbmABacA family protein; KEGG: ret:RHE_CH04032 ABC transporter permease/ATP-binding protein
YP_002977916.1	KEGG: hypothetical protein
YP_002977917.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004320 ABC transporter, ATP-binding protein
YP_002977918.1	TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: rec:RHECIAT_CH0004319 thiamine pyrophosphokinase protein
YP_002977919.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0004318 probable transcriptional regulator protein, MarR family
YP_002977920.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH04028 transporter, permease protein
YP_002977921.1	PFAM: peptidase M48 Ste24p; KEGG: rec:RHECIAT_CH0004316 metalloprotease protein
YP_002977922.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production
YP_002977923.1	PFAM: transcription factor CarD; KEGG: ret:RHE_CH04025 CarD family transcriptional regulator; SNP /replace=C
YP_002977924.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rec:RHECIAT_CH0004312 ferredoxin III protein
YP_002977925.1	PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: rec:RHECIAT_CH0004311 heat shock protein (ribosome-associated)
YP_002977926.1	PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: rec:RHECIAT_CH0004310 ATP-dependent DNA helicase protein
YP_002977927.1	KEGG: pzu:PHZ_c2987 hypothetical protein
YP_002977928.1	PFAM: 17 kDa surface antigen; KEGG: ret:RHE_CH04021 hypothetical protein
YP_002977929.1	TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0004307 acetoacetyl-CoA reductase protein
YP_002977930.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_002977931.1	TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: rec:RHECIAT_CH0004305 carbon flux regulator protein
YP_002977932.1	KEGG: rec:RHECIAT_CH0004304 hypothetical protein
YP_002977933.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002977934.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH04014 glutathione S-transferase protein
YP_002977935.1	PFAM: Domain of unknown function DUF1868; KEGG: rec:RHECIAT_CH0004301 hypothetical protein
YP_002977936.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_002977937.1	PFAM: Polyprenyl synthetase; KEGG: rec:RHECIAT_CH0004299 geranyltranstransferase protein
YP_002977938.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002977939.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_002977940.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH04008 transporter, permease protein
YP_002977941.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: rec:RHECIAT_CH0004295 probable transcriptional regulator protein, DeoR family
YP_002977942.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: multidrug ABC transporter
YP_002977943.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ret:RHE_CH04006 amino acid ABC transporter substrate-binding protein
YP_002977944.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH04005 amino acid ABC transporter permease
YP_002977945.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004292 probable amino acid ABC transporter, ATP-binding protein
YP_002977946.1	PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_CH04003 reductase protein
YP_002977947.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_002977948.1	PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ret:RHE_CH04001 LuxR family transcriptional regulator
YP_002977949.1	responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA
YP_002977950.1	KEGG: nwi:Nwi_3115 transposase
YP_002977951.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0004286 glyoxalase protein
YP_002977952.1	KEGG: rec:RHECIAT_CH0004285 protein required for succinylation of osmoregulated periplasmic glucans
YP_002977953.1	PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: rec:RHECIAT_CH0004284 beta-1,2-glucan production associated transmembrane protein
YP_002977954.1	KEGG: rec:RHECIAT_CH0004283 hypothetical protein
YP_002977955.1	KEGG: rec:RHECIAT_CH0004282 hypothetical protein
YP_002977956.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH03996 dipeptide ABC transporter, ATP-binding protein
YP_002977957.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004280 dipeptide ABC transporter, ATP-binding protein
YP_002977958.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0004279 dipeptide ABC transporter, permease protein
YP_002977959.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH03993 dipeptide ABC transporter, permease protein
YP_002977960.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_CH03992 dipeptide ABC transporter, substrate-binding protein
YP_002977961.1	PFAM: peptidase M19 renal dipeptidase; KEGG: ret:RHE_CH03991 membrane dipeptidase protein
YP_002977962.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0004275 probable sugar ABC transporter, permease protein
YP_002977963.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004274 probable sugar ABC transporter, ATP-binding protein
YP_002977964.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0004273 rhizopine ABC transporter, substrate-binding protein
YP_002977965.1	KEGG: rec:RHECIAT_CH0004272 hypothetical protein
YP_002977966.1	PFAM: sulfatase; KEGG: ret:RHE_CH03986 sulfatase (sulfuric ester hydrolase) protein
YP_002977967.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH03985 UDP-glucose 4-epimerase protein
YP_002977968.1	KEGG: rec:RHECIAT_CH0004269 hypothetical protein
YP_002977969.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004268 acetyltransferase protein
YP_002977970.1	KEGG: rec:RHECIAT_CH0004267 hypothetical protein
YP_002977971.1	KEGG: rec:RHECIAT_CH0004266 hypothetical protein
YP_002977972.1	KEGG: rec:RHECIAT_CH0004265 hypothetical protein
YP_002977973.1	TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: rec:RHECIAT_CH0004351 50S ribosomal protein L21
YP_002977974.1	involved in the peptidyltransferase reaction during translation
YP_002977975.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004353 acetyltransferase protein
YP_002977976.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004354 acetyltransferase protein
YP_002977977.1	PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0004355 phosphatase protein
YP_002977978.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002977979.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002977980.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_002977981.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_002977982.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0004361 molybdenum ABC transporter, substrate-binding protein
YP_002977983.1	part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE
YP_002977984.1	KEGG: ret:RHE_CH04073 molybdenum ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter ATPase; PFAM: ABC transporter; TOBE domain protein; SMART: AAA ATPase
YP_002977985.1	PFAM: regulatory protein LysR; KEGG: ret:RHE_CH04074 molybdenum-binding transcriptional regulator-repressor protein (molybdenum transport associatedprotein)
YP_002977986.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rec:RHECIAT_CH0004365 hypothetical protein
YP_002977987.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_002977988.1	PFAM: peptidase M23; KEGG: rec:RHECIAT_CH0004367 metalloendopeptidase protein
YP_002977989.1	KEGG: rec:RHECIAT_CH0004368 C-terminal processing peptidase protein; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein
YP_002977990.1	PFAM: protein of unknown function DUF610 YibQ; KEGG: rec:RHECIAT_CH0004369 hypothetical protein
YP_002977991.1	hydrolyzes diadenosine polyphosphate
YP_002977992.1	TIGRFAM: bacterioferritin; PFAM: ferritin Dps family protein; KEGG: ret:RHE_CH04081 bacterioferritin protein
YP_002977993.1	KEGG: rec:RHECIAT_CH0004372 hypothetical protein
YP_002977994.1	KEGG: rec:RHECIAT_CH0004373 DNA polymerase III protein, alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III alpha subunit; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_002977995.1	KEGG: ret:RHE_CH04085 hypothetical protein
YP_002977996.1	PFAM: protein of unknown function DUF1025; KEGG: ret:RHE_CH04086 hypothetical protein
YP_002977997.1	KEGG: ret:RHE_CH04087 hypothetical protein
YP_002977998.1	PFAM: HpcH/HpaI aldolase; KEGG: rec:RHECIAT_CH0004378 citrate lyase protein, beta subunit
YP_002977999.1	KEGG: rec:RHECIAT_CH0004379 hypothetical protein
YP_002978000.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rec:RHECIAT_CH0004380 hypothetical protein
YP_002978001.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_002978002.1	PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rec:RHECIAT_CH0004382 probable threonine ammonia-lyase protein
YP_002978003.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_002978004.1	PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ret:RHE_CH04094 phosphatase protein
YP_002978005.1	PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0004385 transporter, permease protein
YP_002978006.1	PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0004386 hypothetical conserved membrane protein
YP_002978007.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004387 ABC transporter, ATP-binding protein
YP_002978008.1	KEGG: ret:RHE_CH04098 hypothetical protein
YP_002978009.1	PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; KEGG: ret:RHE_CH04099 alkaline phosphatase protein
YP_002978011.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002978012.1	TIGRFAM: lytic murein transglycosylase; KEGG: rec:RHECIAT_CH0004392 membrane-bound lytic murein transglycosylase protein
YP_002978013.1	KEGG: rec:RHECIAT_CH0004393 sensory box GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002978014.1	PFAM: carbonic anhydrase; KEGG: rec:RHECIAT_CH0004394 carbonic anhydrase protein
YP_002978015.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_002978016.1	PFAM: NAD-glutamate dehydrogenase; KEGG: ret:RHE_CH04105 NAD-specific glutamate dehydrogenase protein
YP_002978017.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH04106 hypothetical protein
YP_002978018.1	involved in de novo purine biosynthesis
YP_002978020.1	PFAM: Heparinase II/III family protein; KEGG: rec:RHECIAT_CH0004400 hypothetical protein
YP_002978021.1	PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rec:RHECIAT_CH0004401 probable RNA methyltransferase - sun protein
YP_002978022.1	metalloprotease
YP_002978023.1	PFAM: protein of unknown function DUF1674; KEGG: rec:RHECIAT_CH0004403 hypothetical protein
YP_002978024.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_002978025.1	PFAM: protein of unknown function DUF1013; KEGG: rec:RHECIAT_CH0004405 hypothetical protein
YP_002978026.1	PFAM: flagellin domain protein; KEGG: rec:RHECIAT_CH0004406 flagellin C protein
YP_002978027.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rec:RHECIAT_CH0004407 probable propionate-CoA ligase protein
YP_002978028.1	PFAM: alanine racemase; KEGG: ret:RHE_CH04115 hypothetical protein
YP_002978029.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002978030.1	KEGG: ret:RHE_CH04117 hypothetical protein
YP_002978031.1	required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA
YP_002978032.1	KEGG: rec:RHECIAT_CH0004412 chromosome partitioning protein B; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease
YP_002978033.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_CH04120 chromosome partitioning protein A
YP_002978034.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_002978035.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002978036.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002978037.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002978038.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0004418 hypothetical protein
YP_002978039.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_002978040.1	PFAM: protein of unknown function DUF299; KEGG: rec:RHECIAT_CH0000002 hypothetical protein
YP_002978041.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_002978042.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_002978043.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_002978044.1	3'-5' exonuclease of DNA polymerase III
YP_002978045.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_002978046.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_002978047.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: ret:RHE_CH00008 translocase transmembrane protein
YP_002978048.1	PFAM: MltA domain protein; 3D domain protein; KEGG: rec:RHECIAT_CH0000010 membrane-bound lytic murein transglycosylase protein
YP_002978049.1	PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: rec:RHECIAT_CH0000011 DNA repair protein, Smr/MutS family
YP_002978050.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0000012 transcriptional regulator protein
YP_002978051.1	negatively supercoils closed circular double-stranded DNA
YP_002978052.1	PFAM: nitroreductase; KEGG: rec:RHECIAT_CH0000014 probable oxidoreductase protein
YP_002978053.1	KEGG: rec:RHECIAT_CH0000015 hypothetical protein
YP_002978054.1	KEGG: rec:RHECIAT_CH0000016 glutathione-S-transferase protein
YP_002978055.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rec:RHECIAT_CH0000017 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase
YP_002978056.1	TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: ret:RHE_CH00017 intracellular PHB depolymerase protein
YP_002978057.1	KEGG: ret:RHE_CH00018 hypothetical protein
YP_002978058.1	PFAM: protein of unknown function DUF45; KEGG: ret:RHE_CH00019 zinc metallopeptidase protein
YP_002978059.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_002978060.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002978061.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_002978062.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_002978063.1	KEGG: rec:RHECIAT_CH0000025 FolC; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein
YP_002978064.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rec:RHECIAT_CH0000026 thioredoxin protein
YP_002978065.1	TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: ret:RHE_CH00026 nuclease/helicase protein, ATP dependent
YP_002978066.1	TIGRFAM: double-strand break repair protein AddB; KEGG: ret:RHE_CH00027 hypothetical protein
YP_002978067.1	PFAM: nucleotidyl transferase; KEGG: ret:RHE_CH00028 nucleotidyltransferase protein
YP_002978068.1	PFAM: protein of unknown function UPF0079; aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: rec:RHECIAT_CH0000030 hypothetical protein
YP_002978069.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: rec:RHECIAT_CH0000031 probable two-component sensor histidine kinase protein
YP_002978070.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_002978071.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: rec:RHECIAT_CH0000033 phosphocarrier protein HPr protein
YP_002978072.1	PFAM: PTS system fructose subfamily IIA component; KEGG: rec:RHECIAT_CH0000034 probable protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of the phosphotransferase system)
YP_002978073.1	KEGG: rec:RHECIAT_CH0000035 hypothetical protein
YP_002978074.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ret:RHE_CH00035 two-component sensor histidine kinase protein
YP_002978075.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0000037 two-component response regulator protein
YP_002978076.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_002978077.1	PFAM: Class I peptide chain release factor; KEGG: ret:RHE_CH00038 hypothetical protein
YP_002978078.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: rec:RHECIAT_CH0000041 alkylated DNA repair protein
YP_002978079.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_002978080.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_002978081.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002978082.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_002978083.1	KEGG: rec:RHECIAT_CH0000046 hypothetical protein
YP_002978084.1	KEGG: rec:RHECIAT_CH0000047 hypothetical protein
YP_002978085.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002978086.1	KEGG: ret:RHE_CH00046 hypothetical protein
YP_002978087.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_002978088.1	heat shock protein involved in degradation of misfolded proteins
YP_002978089.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll5006 aminoglycoside 6'-N-acetyltransferase
YP_002978090.1	heat shock protein involved in degradation of misfolded proteins
YP_002978091.1	PFAM: protein of unknown function DUF1402; KEGG: rec:RHECIAT_CH0000053 hypothetical protein
YP_002978092.1	PFAM: cytochrome P450; KEGG: rec:RHECIAT_CH0000054 probable cytochrome P450 protein
YP_002978093.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_002978094.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0000056 hypothetical protein
YP_002978095.1	PFAM: protein of unknown function DUF1052; KEGG: rec:RHECIAT_CH0000057 hypothetical protein
YP_002978096.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0000058 two-component response regulator protein
YP_002978097.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH00056 two-component sensor histidine kinase protein
YP_002978098.1	KEGG: rec:RHECIAT_CH0000060 ATP-dependent helicase protein; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicase ; helicase domain protein
YP_002978099.1	catalyzes the formation of L-proline from L-ornithine
YP_002978100.1	KEGG: rec:RHECIAT_CH0000069 hypothetical protein
YP_002978101.1	SMART: tetratricopeptide domain protein; KEGG: atc:AGR_L_3032 hypothetical protein
YP_002978102.1	KEGG: atc:AGR_L_2996 hypothetical protein
YP_002978103.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: atc:AGR_L_2998 alkaline proteinase secretion protein; SNP /replace=G
YP_002978104.1	KEGG: atc:AGR_L_3000 ABC protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: AAA ATPase
YP_002978105.1	KEGG: atc:AGR_L_3002 hypothetical protein
YP_002978106.1	KEGG: atc:AGR_L_3004 hypothetical protein
YP_002978107.1	PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: ret:RHE_CH00066 LuxR family transcriptional regulator
YP_002978108.1	KEGG: rec:RHECIAT_CH0000071 hypothetical protein
YP_002978109.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH00068 dTDP-glucose 4,6-dehydratase protein; SNP /replace=A
YP_002978110.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_CH0000073 UDP-glucose 4-epimerase protein
YP_002978111.1	KEGG: rec:RHECIAT_CH0000074 probable cellulose synthase protein
YP_002978112.1	PFAM: protein of unknown function DUF995; KEGG: ret:RHE_CH00071 hypothetical protein
YP_002978113.1	KEGG: rec:RHECIAT_CH0000076 polysaccharide degradation protein
YP_002978114.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0000077 sugar ABC transporter, substrate-binding protein
YP_002978115.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_CH00074 LacI family transcription regulator
YP_002978116.1	KEGG: rec:RHECIAT_CH0000079 hypothetical protein
YP_002978117.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_CH00076 D-2-hydroxyacid dehydrogenase protein
YP_002978118.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0000081 oxidoreducatse protein
YP_002978119.1	PFAM: xylose isomerase; KEGG: ret:RHE_CH00078 endonuclease protein
YP_002978120.1	PFAM: protein of unknown function DUF993; KEGG: ret:RHE_CH00079 hypothetical protein
YP_002978121.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0000084 oxidoreductase protein
YP_002978122.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_CH00081 TetR family transcriptional regulator
YP_002978123.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH00082 sugar ABC transporter, substrate-binding protein
YP_002978124.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000087 probable sugar ABC transporter, permease protein
YP_002978125.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000088 probable sugar ABC transporter, permease protein
YP_002978126.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH00085 oxidoreductase protein
YP_002978127.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_CH00086 sugar ABC transporter, ATP binding protein
YP_002978128.1	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: ret:RHE_CH00087 choline kinase protein
YP_002978129.1	PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein barrel; Sarcosine oxidase gamma subunit; glycine cleavage T protein (aminomethyl transferase); KEGG: rec:RHECIAT_CH0000092 probable sarcosine dehydrogenase protein
YP_002978130.1	PFAM: Integrase catalytic region; KEGG: hne:HNE_3190 ISHne2, transposase
YP_002978131.1	PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: rec:RHECIAT_CH0000093 D-mannonate oxidoreductase protein
YP_002978132.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_002978133.1	PFAM: SlyX family protein; KEGG: rec:RHECIAT_CH0000095 hypothetical protein
YP_002978134.1	KEGG: rec:RHECIAT_CH0000096 succinate-semialdehyde dehydrogenase (NAD(P)(+)) protein; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde Dehydrogenase
YP_002978135.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_002978136.1	PFAM: Cupin 2 conserved barrel domain protein; regulatory protein MerR; helix-turn-helix domain protein; SMART: regulatory protein MerR; helix-turn-helix domain protein; KEGG: ret:RHE_CH00094 MerR family transcriptional regulator
YP_002978137.1	PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; KEGG: ret:RHE_CH00095 RNAse D protein
YP_002978138.1	KEGG: rec:RHECIAT_CH0000100 hypothetical protein
YP_002978139.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002978140.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_002978141.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_002978142.1	KEGG: ret:RHE_CH00099 hypothetical protein
YP_002978143.1	KEGG: rec:RHECIAT_CH0000105 excinuclease ABC protein, C subunit
YP_002978144.1	PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ret:RHE_PE00352 taurine dioxygenase protein
YP_002978145.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: alcohol dehydrogenase protein ; K07119
YP_002978146.1	KEGG: azc:AZC_3160 ABC transporter substrate binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3
YP_002978147.1	KEGG: rec:RHECIAT_PA0000023 hypothetical protein
YP_002978148.1	KEGG: cysE; serine O-acetyltransferase ; K00640 serine   O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; transferase hexapeptide repeat containing protein
YP_002978149.1	KEGG: ret:RHE_CH00101 hypothetical protein
YP_002978150.1	PFAM: protein of unknown function DUF1275; KEGG: ret:RHE_CH00102 hypothetical protein
YP_002978151.1	PFAM: protein of unknown function DUF218; KEGG: rec:RHECIAT_CH0000139 hypothetical protein
YP_002978152.1	KEGG: ret:RHE_CH00104 hypothetical protein
YP_002978153.1	PFAM: protein of unknown function UPF0126; KEGG: rec:RHECIAT_CH0000141 hypothetical conserved membrane protein
YP_002978154.1	PFAM: ferric-uptake regulator; KEGG: rec:RHECIAT_CH0000142 iron transcriptional regulator protein
YP_002978156.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_002978157.1	FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002978158.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_002978159.1	PFAM: methyltransferase small; KEGG: rec:RHECIAT_CH0000146 probable rRNA (guanine-N(2)-)-methyltransferase protein; SNP /replace=G
YP_002978160.1	KEGG: ret:RHE_CH00111 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein
YP_002978161.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002978162.1	PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0000150 hydrolase protein
YP_002978163.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_002978164.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_002978165.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002978166.1	PFAM: protein of unknown function DUF448; KEGG: ret:RHE_CH00117 hypothetical protein
YP_002978167.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002978168.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_002978169.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000158 acetyltransferase protein
YP_002978170.1	TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding domain 1 protein; KEGG: rec:RHECIAT_CH0000159 probable transglycosylase protein
YP_002978171.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_002978172.1	PFAM: MOSC domain containing protein; KEGG: ret:RHE_CH00124 hypothetical protein
YP_002978173.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000162 hypothetical protein
YP_002978174.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_002978175.1	PFAM: histidine triad (HIT) protein; KEGG: ret:RHE_CH00127 hypothetical protein
YP_002978176.1	PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: ret:RHE_CH00128 MutT/NUDIX family NTP pyrophosphohydrolase
YP_002978177.1	PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0000166 transcriptional regulator protein
YP_002978178.1	KEGG: rec:RHECIAT_CH0000167 hypothetical protein
YP_002978179.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000168 glyoxalase/dioxygenase protein
YP_002978180.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_002978181.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_002978182.1	PFAM: cytochrome C class I; KEGG: ret:RHE_CH00133 cytochrome-c protein
YP_002978183.1	PFAM: Auxin Efflux Carrier; KEGG: rec:RHECIAT_CH0000172 probable ABC transporter, permease protein
YP_002978184.1	PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0000173 sugar kinase protein
YP_002978185.1	PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ret:RHE_CH00136 hypothetical protein
YP_002978186.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ret:RHE_CH00138 D-2-hydroxyacid dehydrogenase protein
YP_002978187.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000176 acetyltransferase protein
YP_002978188.1	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase
YP_002978189.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_002978190.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0000180 transcriptional regulator protein, Cro/CI family
YP_002978191.1	KEGG: ret:RHE_CH00143 hypothetical protein
YP_002978192.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002978193.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002978194.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rec:RHECIAT_CH0000184 probable penicillin binding protein
YP_002978195.1	KEGG: rec:RHECIAT_CH0000185 hypothetical protein
YP_002978196.1	PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ret:RHE_CH00147 hypothetical protein
YP_002978197.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ret:RHE_CH00148 hypothetical protein
YP_002978198.1	KEGG: rec:RHECIAT_CH0000188 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; MHYT domain protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002978199.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rec:RHECIAT_CH0000189 probable transcriptional regulator protein, MarR family; SNP /replace=C
YP_002978200.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_002978201.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: rec:RHECIAT_CH0000191 cell division protein
YP_002978202.1	TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: rec:RHECIAT_CH0000198 ATP-binding phosphonate metabolism protein (ribose 1,5-bisphosphate phosphokinase)
YP_002978203.1	TIGRFAM: phosphonate metabolism protein PhnM; PFAM: Amidohydrolase 3; amidohydrolase; KEGG: ret:RHE_CH00155 phosphonate metabolism protein
YP_002978204.1	TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045; KEGG: rec:RHECIAT_CH0000200 hypothetical protein
YP_002978205.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000201 probable phosphonate ABC transporter, permease protein
YP_002978206.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000202 probable phosphonate ABC transporter, permease protein
YP_002978207.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rec:RHECIAT_CH0000203 probable phosphonate ABC transporter, substrate-binding protein
YP_002978208.1	KEGG: ret:RHE_CH00160 phosphonate ABC transporter ATP-binding; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase
YP_002978209.1	TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: ret:RHE_CH00161 acetyltransferase protein
YP_002978210.1	KEGG: ret:RHE_CH00162 phosphonate ABC transporter ATP-binding; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter; SMART: AAA ATPase
YP_002978211.1	KEGG: rec:RHECIAT_CH0000207 probable phosphonate ABC transporter, ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter; SMART: AAA ATPase
YP_002978212.1	PFAM: phosphonate metabolism PhnJ; KEGG: ret:RHE_CH00164 C-P (carbon-phosphorus) lyase component protein
YP_002978213.1	PFAM: phosphonate metabolism; KEGG: rec:RHECIAT_CH0000209 phosphonate metabolism protein
YP_002978214.1	TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: ret:RHE_CH00166 carbon-phosphorus lyase complex subunit
YP_002978215.1	TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: rec:RHECIAT_CH0000211 phosphonate metabolism protein
YP_002978216.1	KEGG: rec:RHECIAT_CH0000212 probable transcriptional regulator protein, GntR family; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH
YP_002978217.1	catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_002978218.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_002978219.1	PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0000215 multidrug ABC transporter, ATPase and permease protein
YP_002978220.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_002978221.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_002978222.1	D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm
YP_002978223.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0000219 probable peptide ABC transporter, substrate-binding protein
YP_002978224.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000220 probable peptide ABC transporter, permease protein
YP_002978225.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000221 peptide ABC transporter, permease protein
YP_002978226.1	PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH00178 peptide ABC transporter, ATP binding protein
YP_002978227.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0000223 2-hydroxyacid dehydrogenase protein
YP_002978228.1	KEGG: ret:RHE_CH00180 hypothetical protein
YP_002978229.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_002978230.1	KEGG: rec:RHECIAT_CH0000226 hypothetical protein
YP_002978231.1	KEGG: rec:RHECIAT_CH0000227 hypothetical protein
YP_002978232.1	PFAM: protein of unknown function DUF1234; KEGG: hypothetical protein ; K07002
YP_002978233.1	PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; SMART: regulatory protein AsnC/Lrp family; KEGG: mlo:mlr1825 transcriptional regulator
YP_002978234.1	KEGG: ret:RHE_CH00186 hypothetical protein
YP_002978235.1	PFAM: basic membrane lipoprotein; KEGG: rec:RHECIAT_CH0000232 probable outer membrane lipoprotein
YP_002978236.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_CH00188 sugar ABC transporter, ATP-binding protein
YP_002978237.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH00189 sugar ABC transporter, permease protein
YP_002978238.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH00190 sugar ABC transporter, permease protein
YP_002978239.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002978240.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_002978241.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_002978242.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_002978243.1	KEGG: ret:RHE_CH00195 hypothetical protein
YP_002978244.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_002978245.1	catalyzes the formation of inosine from adenosine
YP_002978246.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_002978247.1	KEGG: ret:RHE_CH00199 hypothetical protein
YP_002978248.1	PFAM: TadE family protein; KEGG: rec:RHECIAT_CH0000245 hypothetical protein
YP_002978249.1	KEGG: rec:RHECIAT_CH0000246 pilus subunit transmembrane protein
YP_002978250.1	PFAM: Flp/Fap pilin component; KEGG: rec:RHECIAT_CH0000247 pilus subunit protein
YP_002978251.1	PFAM: peptidase A24A prepilin type IV; KEGG: ret:RHE_CH00203 prepilin peptidase protein
YP_002978252.1	TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rec:RHECIAT_CH0000249 pilus assembly protein
YP_002978253.1	PFAM: type II and III secretion system protein; transport-associated; KEGG: rec:RHECIAT_CH0000250 pilus assembly secretion protein
YP_002978254.1	TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: rec:RHECIAT_CH0000251 pilus assembly protein
YP_002978255.1	KEGG: ret:RHE_CH00207 pilus assembly protein, response regulator protein
YP_002978256.1	PFAM: type II secretion system protein E; KEGG: ret:RHE_CH00208 pilus assembly secretion ATP-binding protein
YP_002978257.1	PFAM: type II secretion system protein; KEGG: rec:RHECIAT_CH0000254 probable pilus assembly protein
YP_002978258.1	PFAM: type II secretion system protein; KEGG: rec:RHECIAT_CH0000255 pilus component protein
YP_002978259.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0000256 probable amino acid efflux protein, LysE family
YP_002978260.1	PFAM: tetratricopeptide TPR_4; KEGG: rec:RHECIAT_CH0000257 pilus assembly protein (contains TPR repeats)
YP_002978261.1	PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ret:RHE_CH00213 leucine aminopeptidase protein
YP_002978263.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_CH00216 MarR family transcriptional regulator
YP_002978264.1	PFAM: NLP/P60 protein; KEGG: ret:RHE_CH00217 endopeptidase-related protein
YP_002978265.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002978266.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH00219 peptide ABC transporter permease
YP_002978267.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000263 probable ABC transporter, permease protein
YP_002978268.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0000264 probable ABC transporter, substrate-binding protein
YP_002978269.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator protein
YP_002978270.1	PFAM: peptidase S58 DmpA; KEGG: rec:RHECIAT_CH0000265 peptidase protein
YP_002978271.1	KEGG: rec:RHECIAT_CH0000266 hypothetical protein
YP_002978272.1	PFAM: aminotransferase class-III; aminoglycoside phosphotransferase; KEGG: ret:RHE_CH00224 hypothetical protein
YP_002978273.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_002978274.1	PFAM: acyltransferase; KEGG: rec:RHECIAT_CH0000269 exopolysaccharide production protein
YP_002978275.1	KEGG: rec:RHECIAT_CH0000270 probable polysaccharide biosynthesis protein
YP_002978276.1	PFAM: glycoside hydrolase family 5; KEGG: rec:RHECIAT_CH0000271 probable carboxymethyl cellulase protein
YP_002978277.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0000272 probable succinoglycan biosynthesis transport protein
YP_002978278.1	KEGG: ret:RHE_CH00230 hypothetical protein
YP_002978280.1	PFAM: Cephalosporin hydroxylase; KEGG: azc:AZC_3471 cephalosporin hydroxylase
YP_002978281.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pfo:Pfl01_1514 DegT/DnrJ/EryC1/StrS aminotransferase
YP_002978282.1	PFAM: Cephalosporin hydroxylase; KEGG: azc:AZC_3471 cephalosporin hydroxylase
YP_002978283.1	KEGG: cak:Caul_4924 hexapaptide repeat-containing transferase
YP_002978284.1	PFAM: glycosyl transferase family 2; KEGG: azc:AZC_3476 glycosyltransferase
YP_002978285.1	KEGG: azc:AZC_3477 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_002978286.1	PFAM: C-methyltransferase; methyltransferase domain protein; methyltransferase type 12; methyltransferase type 11; KEGG: azc:AZC_3478 NDP-hexose 3-C-methyltransferase protein
YP_002978287.1	TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: azc:AZC_3479 CDP-glucose 4,6-dehydratase
YP_002978288.1	TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: azc:AZC_3480 glucose-1-phosphate cytidylyltransferase
YP_002978289.1	KEGG: ppf:Pput_4881 poly(hydroxyalkanoate) granule-associated protein
YP_002978290.1	PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0000276 hypothetical protein
YP_002978291.1	TIGRFAM: conserved hypothetical protein; PFAM: Selenoprotein W-related; KEGG: rec:RHECIAT_CH0000277 hypothetical protein
YP_002978292.1	PFAM: glutamine amidotransferase class-I; KEGG: rec:RHECIAT_CH0000278 probable glutamine amidotransferase protein
YP_002978293.1	KEGG: rec:RHECIAT_CH0000279 maltose O-acetyltransferase protein
YP_002978294.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0000280 glutathione-dependent formaldehyde-activating protein
YP_002978295.1	PFAM: CcdB protein; KEGG: rec:RHECIAT_CH0000281 hypothetical protein
YP_002978296.1	KEGG: rec:RHECIAT_CH0000282 hypothetical protein
YP_002978297.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002978298.1	PFAM: TENA/THI-4 domain protein; KEGG: rec:RHECIAT_CH0000284 probable transcriptional activator regulator protein, TenA family
YP_002978299.1	PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0000285 probable transcriptional regulator protein, LacI family
YP_002978300.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000286 probable acetyltransferase protein
YP_002978301.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH00252 haloacid dehalogenase-like hydrolase
YP_002978302.1	PFAM: histone deacetylase superfamily; KEGG: rec:RHECIAT_CH0000288 acetylpolyamine aminohydrolase protein
YP_002978303.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_002978304.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH00255 permease protein
YP_002978305.1	KEGG: rec:RHECIAT_CH0000291 hypothetical protein
YP_002978306.1	PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: ret:RHE_CH00257 hypothetical protein
YP_002978307.1	PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rec:RHECIAT_CH0000293 transglutaminase-like cysteine peptidase protein
YP_002978308.1	KEGG: rec:RHECIAT_CH0000294 hydrolase protein
YP_002978309.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002978310.1	TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: rpmI; ribosomal protein L35 ; K02916 large subunit ribosomal protein L35
YP_002978311.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002978312.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002978313.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002978314.1	KEGG: rec:RHECIAT_CH0000301 hypothetical protein
YP_002978315.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0000302 probable oxidoreductase protein, aldo/keto reductase family
YP_002978316.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0000303 probable transcriptional regulator protein, LysR family
YP_002978317.1	PFAM: protein of unknown function DUF892; KEGG: rec:RHECIAT_CH0000304 hypothetical protein
YP_002978318.1	KEGG: ret:RHE_CH00269 hypothetical protein
YP_002978319.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH00270 acetyltransferase protein
YP_002978320.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00271 aldo/keto reductase family oxidoreductase
YP_002978321.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0000308 probable oxidoreductase protein
YP_002978322.1	PFAM: GtrA family protein; KEGG: ret:RHE_CH00273 hypothetical protein
YP_002978323.1	PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0000310 probable glycosyltransferase protein
YP_002978324.1	KEGG: rec:RHECIAT_CH0000311 hypothetical protein; SNP /replace=G
YP_002978325.1	KEGG: rec:RHECIAT_CH0000312 hypothetical protein
YP_002978326.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_002978327.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rec:RHECIAT_CH0000314 probable NAD(P)H dehydrogenase (quinone) protein
YP_002978328.1	PFAM: peptidase M29 aminopeptidase II; KEGG: ret:RHE_CH00280 aminopeptidase protein
YP_002978329.1	PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH00281 glutathione S-transferase protein
YP_002978330.1	PFAM: regulatory protein MarR; KEGG: ret:RHE_CH00282 MarR family transcriptional regulator
YP_002978331.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rec:RHECIAT_CH0000320 hypothetical protein
YP_002978332.1	PFAM: arsenate reductase and related; KEGG: rec:RHECIAT_CH0000321 probable arsenate reductase protein
YP_002978333.1	PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: ret:RHE_CH00285 hypothetical protein
YP_002978334.1	KEGG: pol:Bpro_2442 2',5' RNA ligase; SNP /replace=G
YP_002978335.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: rec:RHECIAT_CH0000323 probable methylated-DNA-[protein]-cysteine S-methyltransferase protein
YP_002978336.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0000324 short-chain dehydrogenase/oxidoreductase protein
YP_002978337.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH00289 short chain dehydrogenase
YP_002978338.1	KEGG: ret:RHE_CH00290 hypothetical protein
YP_002978339.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0000327 probable transcriptional regulator protein, LysR family
YP_002978340.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0000328 probable transcriptional regulator protein, AraC family
YP_002978341.1	PFAM: PEBP family protein; KEGG: ret:RHE_CH00293 phosphatidylethanolamine-binding protein
YP_002978342.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH00294 acetyltransferase protein
YP_002978343.1	PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bja:blr4000 transcriptional regulatory protein
YP_002978344.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_CH0000331 riboflavin biosynthesis reductase protein
YP_002978345.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator protein
YP_002978346.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr5278 glucose dehydrogenase
YP_002978347.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: idhA; myo-inositol 2-dehydrogenase protein ; K06988
YP_002978348.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002978349.1	Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002978350.1	PFAM: thioesterase superfamily protein; KEGG: rec:RHECIAT_CH0000336 phenylacetic acid degradation protein
YP_002978351.1	KEGG: rec:RHECIAT_CH0000337 hypothetical protein
YP_002978352.1	PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000338 hypothetical protein
YP_002978353.1	KEGG: rec:RHECIAT_CH0000339 hypothetical protein
YP_002978354.1	PFAM: protein of unknown function DUF1111; KEGG: ret:RHE_CH00303 hypothetical protein
YP_002978355.1	KEGG: rec:RHECIAT_CH0000341 hypothetical protein
YP_002978356.1	PFAM: Fmu (Sun) domain protein; KEGG: rec:RHECIAT_CH0000342 tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
YP_002978357.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: rec:RHECIAT_CH0000343 probable rare lipoprotein A protein
YP_002978358.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_CH0000345 nucleoside-diphosphate-sugar epimerase protein
YP_002978359.1	PFAM: hypothetical protein; HEAT domain containing protein; KEGG: rec:RHECIAT_CH0000346 iron-sulfur cluster binding protein
YP_002978360.1	PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0000347 glutathione S-transferase protein
YP_002978361.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002978362.1	KEGG: ret:RHE_CH00311 hypothetical protein
YP_002978363.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: ret:RHE_CH00312 NADH dehydrogenase/NADH dehydrogenase (ubiquinone) protein
YP_002978364.1	PFAM: protein of unknown function DUF1330; KEGG: rec:RHECIAT_CH0000351 hypothetical protein
YP_002978365.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_002978366.1	PFAM: phosphoglycerate mutase; KEGG: rec:RHECIAT_CH0000353 phosphoglycerate mutase protein
YP_002978367.1	KEGG: ret:RHE_CH00316 phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolaminen- methyltransfe r ase protein
YP_002978368.1	PFAM: protein of unknown function DUF72; KEGG: rec:RHECIAT_CH0000355 hypothetical protein
YP_002978369.1	binds the polymerase to DNA and acts as a sliding clamp
YP_002978370.1	PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rec:RHECIAT_CH0000357 methyltransferase protein
YP_002978371.1	PFAM: protein of unknown function UPF0102; KEGG: rec:RHECIAT_CH0000358 hypothetical protein
YP_002978372.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: rec:RHECIAT_CH0000359 hypothetical protein
YP_002978373.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: transcriptional regulator protein ; K02529 LacI family transcriptional regulator
YP_002978374.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0000687 ribose ABC transporter, substrate-binding protein
YP_002978375.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rbsAch1; ribose ABC transporter ; K10441 ribose transport system ATP-binding protein
YP_002978376.1	PFAM: inner-membrane translocator; KEGG: rbsCch1; ribose ABC transporter ; K10440 ribose transport system permease protein
YP_002978377.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_002978378.1	KEGG: ret:RHE_CH00323 Mg-chelatase protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002978379.1	KEGG: mes:Meso_2096 hypothetical protein
YP_002978380.1	TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rec:RHECIAT_CH0000364 cysteine synthase protein
YP_002978381.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rec:RHECIAT_CH0000365 probable amino acid efflux protein, LysE family
YP_002978382.1	PFAM: ferritin Dps family protein; KEGG: azc:AZC_4121 low temperature-induced protein
YP_002978383.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH00327 transporter permease protein
YP_002978384.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH00328 AsnC family transcriptional regulator
YP_002978385.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000368 acetyltransferase protein
YP_002978386.1	catalyzes the formation of dUMP from dUTP
YP_002978387.1	TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: rec:RHECIAT_CH0000370 peptide chain release factor 3 protein
YP_002978388.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sme:SMc01570 transcription regulator protein
YP_002978389.1	PFAM: glutathione S-transferase domain; KEGG: sml:Smlt1073 glutathione S-transferase
YP_002978390.1	PFAM: endoribonuclease L-PSP; KEGG: sme:SM_b20118 hypothetical protein
YP_002978391.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mlo:mlr7283 transcriptional regulator
YP_002978392.1	PFAM: protein of unknown function UPF0066; KEGG: hypothetical protein
YP_002978393.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH00337 hypothetical protein
YP_002978394.1	PFAM: peptidase S10 serine carboxypeptidase; KEGG: rec:RHECIAT_CH0000375 carboxypeptidase-related protein
YP_002978395.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0000376 probable cyanate transporter protein
YP_002978396.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_CH0000377 probable transcriptional regulator protein, GntR family
YP_002978397.1	PFAM: Pirin domain protein; KEGG: pirin protein ; K06911
YP_002978398.1	PFAM: glutamine amidotransferase class-II; KEGG: ret:RHE_CH00341 glutamine amidotransferase protein
YP_002978399.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_002978400.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PF00142 short chain dehydrogenase
YP_002978401.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH00343 short chain dehydrogenase
YP_002978402.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_CH0000381 probable transcriptional regulator protein, LysR family
YP_002978403.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator protein
YP_002978404.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0000382 transporter permease protein
YP_002978405.1	KEGG: SpoVT/AbrB-like protein
YP_002978406.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_002978407.1	KEGG: ret:RHE_CH00348 hypothetical protein
YP_002978408.1	PFAM: protein of unknown function DUF917; KEGG: rec:RHECIAT_CH0000387 hypothetical protein
YP_002978409.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_002978410.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rec:RHECIAT_CH0000389 allantoinase protein
YP_002978411.1	PFAM: phenylalanine/histidine ammonia-lyase; KEGG: rec:RHECIAT_CH0000390 histidine ammonia-lyase protein
YP_002978412.1	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: rec:RHECIAT_CH0000391 ubiquinone biosynthesis protein
YP_002978413.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_002978414.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_002978415.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002978416.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002978484.1	KEGG: rbsB; ABC transporter substrate binding protein   (ribose)
YP_002978485.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sugar ABC transporter
YP_002978486.1	PFAM: inner-membrane translocator; KEGG: sugar ABC transporter
YP_002978487.1	PFAM: inner-membrane translocator; KEGG: ribose ABC transporter
YP_002978488.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_PC0000325 glycerol kinase protein
YP_002978489.1	KEGG: rec:RHECIAT_PC0000326 putative sugar ABC transporter, substrate-binding protein
YP_002978490.1	KEGG: rec:RHECIAT_PC0000327 hypothetical conserved membrane protein
YP_002978491.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000328 probable sugar ABC transporter, permease protein
YP_002978492.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000329 probable sugar ABC transporter, permease protein
YP_002978493.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000330 probable sugar ABC transporter, ATP-binding protein
YP_002978494.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000331 probable sugar ABC transporter, ATP-binding protein
YP_002978495.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_002978496.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: rec:RHECIAT_PC0000333 probable transcriptional regulator protein, DeoR family
YP_002978497.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_PB00017 hypothetical protein
YP_002978498.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_PB00016 LysR family transcriptional regulator
YP_002978499.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PB00015 putative acetyltransferase protein
YP_002978500.1	PFAM: protein of unknown function DUF992; KEGG: ret:RHE_PB00014 hypothetical protein
YP_002978501.1	PFAM: 17 kDa surface antigen; KEGG: smd:Smed_1985 17 kDa surface antigen
YP_002978502.1	KEGG: sme:SMc01489 putative signal peptide protein
YP_002978503.1	PFAM: protein of unknown function DUF1328; KEGG: smd:Smed_0341 protein of unknown function DUF1328
YP_002978504.1	KEGG: rec:RHECIAT_PC0000337 hypothetical protein
YP_002978505.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: glyoxalase/bleomycin resistance protein/dioxygenase ; K07032
YP_002978506.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PB00012 ABC transporter ATP-binding protein
YP_002978507.1	KEGG: ret:RHE_PB00011 hypothetical protein
YP_002978508.1	PFAM: Aldose 1-epimerase; KEGG: ret:RHE_PB00010 putative aldose 1-epimerase protein
YP_002978509.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PC0000341 multidrug efflux transporter protein
YP_002978510.1	PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_PC0000342 multidrug efflux transporter protein
YP_002978511.1	PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_PC0000343 multidrug efflux transcriptional regulator protein, TetR family
YP_002978512.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_002978513.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PB00005 GntR family transcriptional regulator
YP_002978514.1	KEGG: ret:RHE_PB00004 hypothetical protein
YP_002978515.1	KEGG: rec:RHECIAT_PC0000347 hypothetical protein
YP_002978516.1	PFAM: O-antigen polymerase; KEGG: rec:RHECIAT_PC0000348 putative O-antigen ligase protein
YP_002978517.1	PFAM: polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_PC0000349 dTDP-glucose 4,6-dehydratase protein
YP_002978518.1	PFAM: sugar transferase; KEGG: rec:RHECIAT_PC0000350 galactosyltransferase protein
YP_002978519.1	KEGG: rec:RHECIAT_CH0003150 hypothetical protein
YP_002978520.1	PFAM: protein of unknown function DUF1355; KEGG: psb:Psyr_0772 hypothetical protein
YP_002978521.1	KEGG: bph:Bphy_3460 rhamnose ABC transporter, periplasmic rhamnose-binding protein
YP_002978522.1	PFAM: inner-membrane translocator; KEGG: bpy:Bphyt_5682 monosaccharide-transporting ATPase
YP_002978523.1	PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; KEGG: jan:Jann_2595 ABC transporter related
YP_002978524.1	PFAM: ROK family protein; KEGG: bvi:Bcep1808_1509 ROK family protein
YP_002978525.1	TIGRFAM: ribosomal protein S21; KEGG: rpsU; ribosomal protein S21
YP_002978526.1	PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: molecular chaperone DnaJ family
YP_002978527.1	KEGG: smd:Smed_6375 transcriptional regulator, XRE family
YP_002978528.1	KEGG: atc:AGR_pAT_667 hypothetical protein
YP_002978529.1	PFAM: protein of unknown function DUF214; KEGG: atc:AGR_pAT_665 putative ABC transporter permease protein
YP_002978530.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_pAT_191 AttE-like ABC transporter, ATP binding protein
YP_002978531.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: ret:RHE_PE00161 hypothetical protein
YP_002978532.1	KEGG: rec:RHECIAT_PB0000304 hypothetical protein
YP_002978533.1	KEGG: ret:RHE_PD00012 hypothetical protein
YP_002978534.1	molecular chaperone
YP_002978535.1	PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: selA; L-seryl-tRNA(ser) selenium transferase protein ; K07141
YP_002978536.1	KEGG: hypothetical protein ; K07402 xanthine dehydrogenase   accessory factor
YP_002978537.1	PFAM: protein of unknown function DUF182; KEGG: smd:Smed_1483 protein of unknown function DUF182
YP_002978538.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: bglSf; beta-glucosidase protein
YP_002978539.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: transcriptional regulator protein
YP_002978540.1	KEGG: bid:Bind_2986 isochorismatase hydrolase
YP_002978541.1	KEGG: mlo:mll1738 ATP-binding protein of polyamine ABC transporter; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_002978542.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll1739 permease protein of polyamine ABC transporter
YP_002978543.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll1740 permease protein of polyamine ABC transporter
YP_002978544.1	PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mll1741 periplasmic spermidine/putrescine-binding protein or ABC transporter
YP_002978545.1	PFAM: glycoside hydrolase family 37; KEGG: saz:Sama_3625 cell wall surface anchor family protein
YP_002978546.1	KEGG: ect:ECIAI39_4377 hypothetical protein, putative carbohydrate binding domain
YP_002978547.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; cytochrome c class I; KEGG: cytochrome-c oxidase protein
YP_002978548.1	PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: xdhA; xanthine dehydrogenase protein
YP_002978550.1	PFAM: monooxygenase FAD-binding; KEGG: spe:Spro_2311 monooxygenase FAD-binding
YP_002978551.1	PFAM: alpha/beta hydrolase fold; KEGG: ppw:PputW619_2141 alpha/beta hydrolase fold
YP_002978552.1	PFAM: Asp/Glu/hydantoin racemase; KEGG: ppg:PputGB1_3577 Asp/Glu/hydantoin racemase
YP_002978553.1	PFAM: isochorismatase hydrolase; KEGG: ppf:Pput_1896 isochorismatase hydrolase
YP_002978554.1	KEGG: ppf:Pput_1892 hypothetical protein
YP_002978555.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: transcriptional regulator protein
YP_002978558.1	PFAM: major facilitator superfamily MFS_1; KEGG: mno:Mnod_6367 major facilitator superfamily MFS_1
YP_002978559.1	PFAM: sodium/calcium exchanger membrane region; KEGG: msl:Msil_3452 sodium/calcium exchanger membrane region
YP_002978560.1	PFAM: replication protein C; KEGG: ret:RHE_PF00212 plasmid replication protein RepCf2
YP_002978561.1	KEGG: oan:Oant_4455 ParB-like partition protein; TIGRFAM: plasmid partitioning protein RepB; parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; SMART: ParB domain protein nuclease
YP_002978562.1	TIGRFAM: plasmid partitioning protein RepA; PFAM: Cobyrinic acid ac-diamide synthase; regulatory protein MerR; KEGG: mlo:mll9654 replication protein A
YP_002978563.1	KEGG: similar to collagen type IV alpha 4 chain
YP_002978566.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: atc:AGR_L_203 hybrid histidine protein kinase-phosphate acceptor regulatory protein
YP_002978567.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: atc:AGR_L_201 hypothetical protein
YP_002978568.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002179 iron(III) ABC transporter, substrate-binding protein
YP_002978569.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002178 iron(III) ABC transporter, substrate-binding protein
YP_002978570.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002177 iron(III) ABC transporter, permease protein
YP_002978571.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002176 iron(III) ABC transporter, ATP-binding protein
YP_002978572.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gdi:GDI2021 putative hydrolase protein
YP_002978573.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: transcriptional regulator protein
YP_002978574.1	PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH02122 MutT/NUDIX family hydrolase
YP_002978575.1	PFAM: NUDIX hydrolase; KEGG: vpa:VPA0218 hypothetical protein
YP_002978576.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: lch:Lcho_4051 protein of unknown function UPF0052 and CofD
YP_002978577.1	KEGG: bsu:BSU00500 UDP-N-acetylglucosamine pyrophosphorylase
YP_002978578.1	PFAM: inositol monophosphatase; KEGG: sme:SM_b20150 putative inositol monophosphatase protein
YP_002978579.1	KEGG: sme:SM_b20151 hypothetical protein
YP_002978580.1	KEGG: smd:Smed_6375 transcriptional regulator, XRE family
YP_002978581.1	PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: molecular chaperone DnaJ family
YP_002978582.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH01582 hypothetical protein
YP_002978583.1	KEGG: mno:Mnod_4786 beta-lactamase domain protein
YP_002978584.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_002978585.1	KEGG: ret:RHE_PF00150 hypothetical protein
YP_002978586.1	KEGG: sme:SMc01547 hypothetical protein
YP_002978587.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMa2267 hypothetical protein
YP_002978588.1	KEGG: rec:RHECIAT_PC0000447 hypothetical protein
YP_002978589.1	PFAM: glycoside hydrolase 15-related; KEGG: pst:PSPTO_2493 glycosy hydrolase family protein
YP_002978590.1	PFAM: protein of unknown function DUF1127; KEGG: hypothetical protein
YP_002978591.1	KEGG: bcz:BCZK4404 hypothetical protein
YP_002978592.1	PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sme:SM_b21419 putative transcriptional regulator, AraC family protein
YP_002978593.1	KEGG: jan:Jann_3094 periplasmic binding protein/LacI transcriptional regulator
YP_002978594.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_3093 ABC transporter related
YP_002978595.1	PFAM: inner-membrane translocator; KEGG: jan:Jann_3092 inner-membrane translocator
YP_002978596.1	KEGG: sme:SM_b21420 putative L-arabinose isomerase protein
YP_002978597.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_PC0000157 probable transcriptional regulator protein
YP_002978598.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_PB00161 fosmidomycin antibiotic resistence permease protein
YP_002978599.1	PFAM: NADPH-dependent FMN reductase; KEGG: NAD(P)H-dependent FMN reductase protein
YP_002978600.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ret:RHE_PB00160 amino acid ABC transporter substrate-binding protein
YP_002978601.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000160 putative ABC transporter, ATP-binding protein
YP_002978602.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter membrane spanning protein ; K02072 D-methionine transport system permease protein
YP_002978603.1	KEGG: rec:RHECIAT_PC0000162 probable monooxygenase protein
YP_002978604.1	MDM; functions in conversion of succinate to propionate
YP_002978605.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ret:RHE_PB00156 hypothetical protein
YP_002978606.1	PFAM: oxidoreductase domain protein; KEGG: rec:RHECIAT_PC0000165 probable oxidoreductase protein
YP_002978607.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_PB00154 oxidoreductase protein
YP_002978608.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_PC0000168 putative glyoxalase protein
YP_002978610.1	TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: atzF; allophanate hydrolase ; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A
YP_002978611.1	KEGG: ret:RHE_PE00118 putative UreA amidolyase protein; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1
YP_002978612.1	TIGRFAM: urea carboxylase-associated protein 1; KEGG: ret:RHE_PE00119 hypothetical protein
YP_002978613.1	TIGRFAM: urea carboxylase-associated protein 2; KEGG: rec:RHECIAT_PC0000105 hypothetical protein
YP_002978614.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter ; K02049 sulfonate/nitrate/taurine transport system ATP-binding protein
YP_002978615.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00122 putative ABC transporter, permease protein
YP_002978616.1	TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; PFAM: NLPA lipoprotein; KEGG: ABC transporter ; K02051 sulfonate/nitrate/taurine transport system substrate-binding protein
YP_002978617.1	PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PC0000169 probable transcriptional regulator protein, AraC family
YP_002978618.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PB00150 sugar ABC transporter, substrate-binding protein
YP_002978619.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00149 sugar ABC transporter, permease protein
YP_002978620.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000171 probable sugar ABC transporter, permease protein
YP_002978621.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PB00147 sugar ABC transporter, ATP-binding protein
YP_002978622.1	PFAM: oxidoreductase domain protein; aldo/keto reductase; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: rec:RHECIAT_PC0000173 probable oxidoreductase protein
YP_002978623.1	TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: azc:AZC_0586 putative outer membrane lipoprotein
YP_002978624.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: rec:RHECIAT_PC0000174 cytochrome bd ubiquinol oxidase protein, subunit II
YP_002978625.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: rec:RHECIAT_PC0000175 cytochrome bd ubiquinol oxidase protein, subunit I
YP_002978626.1	KEGG: rec:RHECIAT_PC0000176 putative ABC transporter involved in cytochrome bd biosynthesis, ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002978627.1	KEGG: rec:RHECIAT_PC0000177 putative ABC transporter involved in cytochrome bd biosynthesis, ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase
YP_002978628.1	KEGG: rec:RHECIAT_PC0000178 putative transcriptional regulator protein
YP_002978629.1	KEGG: cps:CPS_1445 hypothetical protein
YP_002978630.1	KEGG: met:M446_1543 hypothetical protein
YP_002978631.1	KEGG: met:M446_1542 hypothetical protein
YP_002978632.1	PFAM: HupE/UreJ protein; KEGG: ret:RHE_PB00145 hypothetical protein
YP_002978633.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_PB00144 phosphoglycerate oxidoreductase protein
YP_002978634.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: rec:RHECIAT_PC0000182 putative import inner membrane translocase protein, TIM family
YP_002978635.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ret:RHE_PB00140 hypothetical protein
YP_002978636.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000184 putative sugar ABC transporter, substrate-binding protein
YP_002978637.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000185 putative sugar ABC transporter, permease protein
YP_002978638.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000186 putative sugar ABC transporter, permease protein
YP_002978639.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000187 putative sugar ABC transporter, ATP-binding protein
YP_002978640.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ret:RHE_PB00135 glycerophosphoryl diester phosphodiesterase protein
YP_002978641.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PC0000189 putative transcriptional regulator protein, LacI family
YP_002978642.1	PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_PC0000190 putative myo-inositol monophosphatase protein
YP_002978643.1	KEGG: GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002978644.1	KEGG: ret:RHE_PB00132 hypothetical protein
YP_002978645.1	PFAM: aminotransferase class V; KEGG: ret:RHE_PB00131 aspartate aminotransferase protein
YP_002978646.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PB00130 putative oligopeptide ABC transporter, ATP binding protein
YP_002978647.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000194 probable ABC transporter, ATP-binding protein
YP_002978648.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000195 probable ABC transporter, permease protein
YP_002978649.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000196 probable ABC transporter, permease protein
YP_002978650.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000197 probable oligopeptide ABC transporter, substrate-binding protein
YP_002978651.1	KEGG: ret:RHE_PB00125 DszA family monooxygenase
YP_002978652.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PB00124 putative sugar ABC transporter, permease protein
YP_002978653.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PB00123 sugar ABC transporter, ATP-binding protein
YP_002978654.1	KEGG: ret:RHE_PB00122 sugar ABC transporter, substrate-binding protein
YP_002978655.1	PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase domain protein; KEGG: ret:RHE_PB00121 acyl-CoA dehydrogenase protein
YP_002978656.1	PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase domain protein; KEGG: ret:RHE_PB00120 FMNH2-dependent monooxygenase protein
YP_002978658.1	KEGG: ret:RHE_PB00119 nitrilotriacetate monooxygenase protein, component A
YP_002978659.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_PB00118 LacI family transcription regulator
YP_002978660.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: ret:RHE_PB00117 putative oxidoreductase protein
YP_002978661.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rec:RHECIAT_PC0000200 putative xylose isomerase domain protein
YP_002978662.1	PFAM: extracellular solute-binding protein family 1; KEGG: sme:SM_b21595 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor
YP_002978663.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b21594 putative sugar uptake ABC transporter permease protein
YP_002978664.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4914 binding-protein-dependent transport systems inner membrane component
YP_002978665.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000204 probable sugar ABC transporter, ATP-binding protein
YP_002978666.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: transcriptional regulator LacI family ; K02529 LacI family transcriptional regulator
YP_002978667.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ABC transporter nucleotide binding/ATPase protein
YP_002978668.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter nucleotide binding/ATPase protein
YP_002978669.1	PFAM: inner-membrane translocator; KEGG: ABC transporter membrane spanning protein (sugar)
YP_002978670.1	PFAM: aryldialkylphosphatase; KEGG: resiniferatoxin-binding phosphotriesterase-related protein ; K07048
YP_002978671.1	PFAM: protein of unknown function DUF1355; KEGG: atc:AGR_L_3482 hypothetical protein
YP_002978672.1	PFAM: photosystem I assembly BtpA; KEGG: hypothetical protein ; K06971
YP_002978673.1	PFAM: TENA/THI-4 domain protein; KEGG: rsp:RSP_3694 putative transcription activator
YP_002978674.1	PFAM: PfkB domain protein; KEGG: rbsK; ribokinase ; K00852 ribokinase
YP_002978675.1	PFAM: inositol monophosphatase; KEGG: ret:RHE_PB00111 myo-inositol-1(or 4)-monophosphatase protein
YP_002978676.1	PFAM: Transport-associated OB domain protein; KEGG: ABC transporter nucleotide binding/ATPase protein
YP_002978677.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_002978678.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rsq:Rsph17025_2061 LysR family transcriptional regulator
YP_002978679.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsh:Rsph17029_3085 short-chain dehydrogenase/reductase SDR
YP_002978680.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: mes:Meso_3140 hypothetical protein
YP_002978681.1	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: pcm1; protein-L-isoaspartate O-methyltransferase protein ; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_002978682.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_002978683.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000210 probable sugar ABC transporter, permease protein
YP_002978684.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000211 putative sugar ABC transporter, permease protein
YP_002978685.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PB00104 sugar ABC transporter, ATP-binding protein
YP_002978686.1	PFAM: Amidase; KEGG: ret:RHE_PB00103 putative amidase protein
YP_002978687.1	PFAM: basic membrane lipoprotein; KEGG: ret:RHE_PB00102 putative lipoprotein periplasmic protein
YP_002978688.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rec:RHECIAT_PC0000216 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein
YP_002978689.1	PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: ret:RHE_PB00100 putative acyltransferase protein
YP_002978690.1	PFAM: phosphatidate cytidylyltransferase; KEGG: rec:RHECIAT_PC0000218 phosphatidate cytidylyltransferase protein
YP_002978691.1	KEGG: ret:RHE_PB00098 hypothetical protein
YP_002978692.1	PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: ret:RHE_PB00097 DnaJ family molecular chaperone
YP_002978693.1	PFAM: UspA domain protein; KEGG: ret:RHE_PB00096 putative universal stress protein
YP_002978694.1	PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rec:RHECIAT_PC0000222 putative NAD-binding phosphogluconate dehydrogenase-like protein
YP_002978695.1	TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: hypothetical protein
YP_002978696.1	YghU; B2989; one of eight putative glutathione transferase proteins from E. coli
YP_002978697.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000232 probable dipeptide ABC transporter, substrate-binding protein
YP_002978698.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000233 probable dipeptide ABC transporter, ATP-binding protein
YP_002978699.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00092 peptide ABC transporter permease
YP_002978700.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000235 probable dipeptide ABC transporter, permease protein
YP_002978701.1	TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_PC0000236 proline iminopeptidase protein
YP_002978702.1	PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: rec:RHECIAT_PC0000237 probable transcriptional regulator protein, LuxR family
YP_002978703.1	KEGG: rec:RHECIAT_PC0000238 proline iminopeptidase protein; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold
YP_002978704.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: transcriptional regulator protein
YP_002978705.1	PFAM: NmrA family protein; KEGG: hypothetical protein
YP_002978706.1	PFAM: Acetamidase/Formamidase; KEGG: rec:RHECIAT_PC0000239 probable acetamidase/formamidase protein
YP_002978708.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_002978709.1	converts acetoacetate to acetone and carbon dioxide
YP_002978710.1	PFAM: Patatin; KEGG: patatin-like phospholipase domain-containing protein ; K07001
YP_002978711.1	PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00190 putative insertion sequence transposase protein
YP_002978712.1	KEGG: ret:RHE_PD00189 hypothetical protein
YP_002978713.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0004010 probable sugar ABC transporter, permease protein
YP_002978714.1	KEGG: smd:Smed_4886 integrase catalytic region
YP_002978715.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH01378 HlyD family protein secretion protein
YP_002978716.1	PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000253 putative toxin secretion ABC transporter protein
YP_002978717.1	KEGG: ret:RHE_CH01376 hypothetical protein
YP_002978718.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: ret:RHE_CH01375 P47K family cobalamin synthesis protein
YP_002978719.1	KEGG: rec:RHECIAT_PC0000256 hypothetical protein
YP_002978720.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: ret:RHE_CH01373 P47K family cobalamin synthesis protein
YP_002978721.1	KEGG: ret:RHE_CH01372 hypothetical protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein
YP_002978722.1	PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01370 exopolysaccharide biosynthesis protein
YP_002978723.1	PFAM: polysaccharide biosynthesis protein; KEGG: rec:RHECIAT_PC0000260 probable transmembrane polysaccharide biosynthesis protein
YP_002978724.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ret:RHE_CH01368 aminotransferase protein (involved in cell wall biogenesis)
YP_002978725.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: ret:RHE_CH01367 UDP-glucose 4-epimerase protein
YP_002978726.1	KEGG: rec:RHECIAT_PC0000263 putative acetyltransferase protein
YP_002978727.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ret:RHE_CH01365 putative aminotransferase protein
YP_002978728.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH01364 oxidoreductase protein
YP_002978729.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: ret:RHE_CH01363 acetyltransferase protein
YP_002978730.1	PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ret:RHE_CH01362 two-component response regulator protein
YP_002978731.1	KEGG: ret:RHE_CH01361 hypothetical protein
YP_002978732.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ret:RHE_CH01360 dTDP-glucose 4,6-dehydratase protein
YP_002978733.1	KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase
YP_002978734.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: ret:RHE_CH01358 putative teichoic acid biosynthesis, UDP-N-acetyl-D-mannosaminuronic acid transferase protein
YP_002978736.1	KEGG: ret:RHE_CH01356 hypothetical protein
YP_002978737.1	PFAM: O-antigen polymerase; KEGG: ret:RHE_CH01355 exopolysaccharide production protein
YP_002978738.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH01354 glycosyltransferase
YP_002978739.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH01353 putative glycosyltransferase protein
YP_002978740.1	PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH01352 glycosyltransferase
YP_002978741.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: ret:RHE_CH01351 exopolysaccharide biosynthesis protein
YP_002978742.1	TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH01350 GDP-mannose 4,6-dehydratase protein
YP_002978743.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: mpo:Mpop_5160 NAD-dependent epimerase/dehydratase
YP_002978744.1	TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: traA; Ti-type conjugative transfer relaxase TraA
YP_002978745.1	KEGG: mobilization protein C
YP_002978746.1	PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: ret:RHE_CH02651 hypothetical protein
YP_002978747.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002978748.1	KEGG: rec:RHECIAT_CH0003079 hypothetical protein
YP_002978749.1	PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: sal:Sala_1706 methyltransferase type 12
YP_002978750.1	PFAM: regulatory protein LuxR; alpha/beta hydrolase fold; SMART: regulatory protein LuxR; KEGG: bph:Bphy_5343 LuxR family transcriptional regulator
YP_002978751.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: FAD-dependent L-sorbose dehydrogenase protein
YP_002978752.1	PFAM: Aldose 1-epimerase; KEGG: spe:Spro_4225 aldose 1-epimerase
YP_002978753.1	PFAM: inner-membrane translocator; KEGG: spe:Spro_4227 monosaccharide-transporting ATPase
YP_002978754.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ecc:c3069 ABC transporter ATP-binding protein
YP_002978755.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ect:ECIAI39_2751 putative sugar transporter subunit: periplasmic-binding component of ABC superfamily
YP_002978756.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: transcriptional regulator, GntR family
YP_002978757.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0001648 hypothetical protein
YP_002978758.1	TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0002887 L-ribulokinase protein
YP_002978759.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rdh; ribitol 2-dehydrogenase
YP_002978760.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH02748 putative hydrolase protein
YP_002978761.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rec:RHECIAT_CH0002889 glycerophosphoryl diester phosphodiesterase protein
YP_002978762.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH02750 sn-glycerol-3-phosphate ABC transporter, permease protein
YP_002978763.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0002891 sn-glycerol-3-phosphate ABC transporter, permease protein
YP_002978764.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002892 sn-glycerol-3-phosphate ABC transporter, substrate-binding protein
YP_002978765.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_002978766.1	PFAM: putative sugar-binding domain protein; KEGG: rec:RHECIAT_CH0002894 putative transcriptional regulator protein, DeoR family
YP_002978767.1	KEGG: ret:RHE_PB00041 L-isoaspartyl protein carboxyl methyltransferase protein; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11
YP_002978768.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PB00038 GntR family transcriptional regulator
YP_002978769.1	KEGG: rec:RHECIAT_PC0000315 hypothetical protein
YP_002978770.1	KEGG: rec:RHECIAT_PC0000316 probable oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002978771.1	KEGG: ret:RHE_PB00035 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_002978772.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00034 putative oligopeptide ABC transporter, permease protein
YP_002978773.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00033 putative oligopeptide ABC transporter, permease protein
YP_002978774.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PB00032 putative oligopeptide ABC transporter, substrate-binding protein
YP_002978775.1	PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000321 dihydrodipicolinate synthase protein
YP_002978776.1	KEGG: ret:RHE_PB00030 putative glycosyl hydrolase protein
YP_002978777.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: rec:RHECIAT_PC0000323 probable iron alcohol dehydrogenase protein
YP_002978778.1	KEGG: rec:RHECIAT_PC0000324 4-hydroxythreonine-4-phosphate dehydrogenase protein; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_002978779.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rec:RHECIAT_CH0001235 hypothetical protein
YP_002978780.1	PFAM: PilT protein domain protein; KEGG: sme:SMa0453 hypothetical protein
YP_002978781.1	PFAM: RES domain protein; KEGG: mlo:mlr9079 hypothetical protein
YP_002978782.1	KEGG: mlo:mlr9078 hypothetical protein
YP_002978783.1	PFAM: alanyl-tRNA synthetase class IIc; KEGG: ret:RHE_PB00027 class II aminoacyl t-RNA synthetase domain-containing protein
YP_002978784.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll8571 ABC transporter, permease protein
YP_002978785.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll8572 ABC transporter, ATP-binding protein
YP_002978786.1	PFAM: NMT1/THI5 like domain protein; KEGG: mlo:mll8573 hypothetical protein
YP_002978787.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll8574 hypothetical protein
YP_002978788.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rpb:RPB_3417 AraC family transcriptional regulator
YP_002978790.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: cvi:CV_2781 hypothetical protein
YP_002978791.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bbr:BB2470 hypothetical protein
YP_002978792.1	KEGG: mes:Meso_1108 hypothetical protein
YP_002978794.1	LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment
YP_002978797.1	KEGG: mpo:Mpop_0106 glutaredoxin
YP_002978798.1	KEGG: sme:SMc03832  signal peptide protein
YP_002978800.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; KEGG: mch:Mchl_4788 histidine kinase
YP_002978801.1	KEGG: ret:RHE_CH01758 hypothetical protein
YP_002978802.1	KEGG: hypothetical protein
YP_002978803.1	PFAM: BA14K family protein; KEGG: bcs:BCAN_B0743 BA14K family protein
YP_002978804.1	PFAM: protein of unknown function DUF982; KEGG: sme:SM_b21296 hypothetical protein
YP_002978805.1	PFAM: monooxygenase FAD-binding; KEGG: ftn:FTN_1049 hypothetical protein
YP_002978806.1	KEGG: rec:RHECIAT_PC0000150 hypothetical protein
YP_002978807.1	KEGG: sme:SM_b20236 hypothetical protein
YP_002978810.1	PFAM: protein of unknown function DUF1223; KEGG: xau:Xaut_1385 hypothetical protein
YP_002978811.1	KEGG: bra:BRADO6716  thioredoxin (H-type,TRX-H)
YP_002978812.1	PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mrd:Mrad2831_5394 cytochrome c biogenesis protein transmembrane region
YP_002978813.1	KEGG: rec:RHECIAT_PB0000304 hypothetical protein
YP_002978814.1	KEGG: ret:RHE_PD00012 hypothetical protein
YP_002978821.1	KEGG: nmu:Nmul_A0115 hypothetical protein
YP_002978822.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: GK23888 gene product from transcript GK23888-RA
YP_002978823.1	PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bra:BRADO3551 hypothetical protein
YP_002978824.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: Prss8; protease, serine, 8 (prostasin) ; K08664 protease, serine, 8 (prostasin)
YP_002978825.1	PFAM: Peptidase S53 propeptide; KEGG: bac:BamMC406_5169 peptidase S53 propeptide
YP_002978826.1	KEGG: hypothetical protein
YP_002978827.1	KEGG: lpp:lpp2172 hypothetical protein
YP_002978828.1	KEGG: mxa:MXAN_2365 hypothetical protein
YP_002978829.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: afw:Anae109_1811 peptidase S8 and S53 subtilisin kexin sedolisin
YP_002978831.1	SMART: phospholipase D/Transphosphatidylase; KEGG: rpc:RPC_3413 hypothetical protein
YP_002978832.1	KEGG: jan:Jann_2613 hypothetical protein
YP_002978833.1	SMART: AAA ATPase; KEGG: bcm:Bcenmc03_0023 AAA ATPase
YP_002978834.1	KEGG: scl:sce1431 hypothetical protein
YP_002978835.1	PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PD00345 insertion sequence transposase protein
YP_002978836.1	KEGG: xca:xccb100_2632 hypothetical protein
YP_002978838.1	KEGG: dac:Daci_1708 hypothetical protein
YP_002978839.1	KEGG: pde:Pden_1438 pathogenesis-related protein
YP_002978840.1	KEGG: pae:PA1939 hypothetical protein
YP_002978841.1	PFAM: protein of unknown function DUF1612; KEGG: Y4cF protein
YP_002978842.1	PFAM: integrase family protein; KEGG: integrase IntA
YP_002978843.1	KEGG: bph:Bphy_4499 hypothetical protein
YP_002978844.1	SMART: AAA ATPase; KEGG: mlo:mlr9349 hypothetical protein
YP_002978845.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: hypothetical protein
YP_002978846.1	PFAM: replication protein C; KEGG: repC; replication protein C
YP_002978847.1	KEGG: repB; replication protein B; TIGRFAM: plasmid partitioning protein RepB; parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; SMART: ParB domain protein nuclease
YP_002978848.1	TIGRFAM: plasmid partitioning protein RepA; PFAM: Cobyrinic acid ac-diamide synthase; regulatory protein MerR; KEGG: ret:RHE_PA00033 plasmid partitioning protein RepAa2; SNP /replace=C
YP_002978849.1	PFAM: autoinducer synthesis protein; KEGG: smd:Smed_5375 autoinducer synthesis protein
YP_002978850.1	VirB11 family protein; ATPase
YP_002978851.1	PFAM: Conjugal transfer protein TrbC; KEGG: trbC; conjugal transfer protein ; K03197 type IV secretion system protein VirB2
YP_002978852.1	PFAM: Conjugal transfer TrbD family protein; KEGG: ret:RHE_PA00176 conjugal transfer protein D
YP_002978853.1	type IV secretion system ATPase; VirB4 family
YP_002978854.1	TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: trbJ; P-type conjugative transfer protein TrbJ
YP_002978856.1	TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: atc:AGR_pTi_76 conjugal transfer protein TrbL
YP_002978857.1	PFAM: Conjugal transfer protein; KEGG: ret:RHE_PA00172 conjugal transfer protein F
YP_002978858.1	TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: trbG; P-type conjugative transfer protein TrbG ; K03204 type IV secretion system protein VirB9
YP_002978859.1	KEGG: trbH; conjugal transfer protein
YP_002978860.1	PFAM: conjugation TrbI family protein; KEGG: atc:AGR_pTi_71 conjugal transfer protein TrbI
YP_002978861.1	PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: xau:Xaut_4889 autoinducer-binding domain-containing protein
YP_002978862.1	KEGG: vei:Veis_3722 hypothetical protein
YP_002978863.1	KEGG: vei:Veis_3723 hypothetical protein
YP_002978864.1	PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: mlo:mlr1334 two-component response regulator
YP_002978865.1	PFAM: transcriptional regulator domain protein; KEGG: mlo:mlr5913 phosphate regulatory protein
YP_002978866.1	PFAM: Amidohydrolase 3; KEGG: ilo:IL0605 hypothetical protein
YP_002978867.1	PFAM: MmgE/PrpD family protein; KEGG: mlo:mll9010 hypothetical protein
YP_002978868.1	PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mxa:MXAN_7463  ornithine cyclodeaminase
YP_002978869.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: oan:Oant_4151 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_002978870.1	KEGG: demethylmenaquinone methyltransferase protein
YP_002978871.1	PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ppu:PP_4466 TauD/TfdA family dioxygenase
YP_002978872.1	KEGG: scl:sce9306 spermidine/putrescine transport system ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_002978873.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_5050 binding-protein-dependent transport systems inner membrane component
YP_002978874.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_5049 binding-protein-dependent transport systems inner membrane component
YP_002978875.1	PFAM: extracellular solute-binding protein family 1; KEGG: xau:Xaut_0863 extracellular solute-binding protein
YP_002978876.1	PFAM: protein of unknown function DUF433; KEGG: ret:RHE_PA00164 hypothetical protein
YP_002978877.1	KEGG: ret:RHE_PA00163 hypothetical protein
YP_002978878.1	PFAM: TraH_2 family protein; KEGG: ret:RHE_PA00162 conjugal transfer protein H
YP_002978879.1	PFAM: TraB family protein; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ret:RHE_PA00161 conjugal transfer protein B
YP_002978880.1	TIGRFAM: conjugative transfer signal peptidase TraF; KEGG: ret:RHE_PA00160 conjugal transfer protein F
YP_002978881.1	conjugal transfer system TraA; oriT nicking enzyme
YP_002978882.1	PFAM: TraC family protein; KEGG: ret:RHE_PA00158 conjugal transfer protein C
YP_002978883.1	PFAM: Conjugal transfer TraD family protein; KEGG: traD; conjugal transfer protein Dtr system
YP_002978884.1	VirD4 family
YP_002978886.1	PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: hypothetical protein
YP_002978887.1	PFAM: protein of unknown function DUF736; KEGG: hypothetical protein
YP_002978889.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: 2-hydroxyhepta-24-diene-1
YP_002978890.1	PFAM: Acetoacetate decarboxylase; KEGG: hypothetical protein
YP_002978891.1	PFAM: monooxygenase FAD-binding; KEGG: bbt:BBta_5585  FAD-binding monooxygenase
YP_002978892.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: oxidoreductase
YP_002978893.1	PFAM: Glutathione S-transferase domain; KEGG: attY; glutathione S-transferase
YP_002978894.1	PFAM: protein of unknown function DUF1486; KEGG: hypothetical protein
YP_002978895.1	PFAM: Carbohydrate-selective porin OprB; KEGG: carbohydrate-selective porin ; K07267 porin
YP_002978896.1	PFAM: major facilitator superfamily MFS_1; KEGG: MFS permease
YP_002978897.1	PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: indole dioxygenase
YP_002978898.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: flavoprotein oxidoreductase
YP_002978899.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: transcriptional regulator
YP_002978900.1	PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bra:BRADO2272  catechol 1,2-dioxygenase
YP_002978901.1	PFAM: monooxygenase FAD-binding; KEGG: bra:BRADO2271 2,4-dichlorophenol 6-monooxygenase (2, 4-dichlorophenol hydroxylase)
YP_002978902.1	PFAM: inner-membrane translocator; KEGG: ABC transporter membrane spanning protein (branched chain amino acid) ; K01998 branched-chain amino acid transport system permease protein
YP_002978903.1	PFAM: inner-membrane translocator; KEGG: ABC transporter membrane spanning protein (branched chain amino acid) ; K01997 branched-chain amino acid transport system permease protein
YP_002978904.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter ; K01996 branched-chain amino acid transport system ATP-binding protein
YP_002978905.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter nucleotide binding/ATPase protein ; K01995 branched-chain amino acid transport system ATP-binding protein
YP_002978906.1	KEGG: ABC transporter substrate-binding protein ; K01999   branched-chain amino acid transport system substrate-binding protein
YP_002978907.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: atc:AGR_C_4594 hypothetical protein
YP_002978908.1	PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: bra:BRADO2264  catechol 1,2-dioxygenase
YP_002978909.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bra:BRADO2263 LysR family transcriptional regulator
YP_002978910.1	PFAM: domain of unknown function DUF1738; KEGG: rec:RHECIAT_PB0000154 probable DNA conjugal transfer antirestriction protein
YP_002978911.1	KEGG: rec:RHECIAT_PC0000719 hypothetical protein
YP_002978912.1	KEGG: ret:RHE_PD00012 hypothetical protein
YP_002978913.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pde:Pden_3439 two component transcriptional regulator, winged helix family
YP_002978914.1	PFAM: Invasion associated locus B family protein; KEGG: nwi:Nwi_0706 invasion associated locus B
YP_002978916.1	PFAM: type II and III secretion system protein; transport-associated; KEGG: rec:RHECIAT_CH0000250 pilus assembly secretion protein
YP_002978918.1	PFAM: protein of unknown function DUF72; KEGG: nis:NIS_1306 hypothetical protein
YP_002978921.1	KEGG: hypothetical protein
YP_002978922.1	PFAM: heat shock protein Hsp20; KEGG: rec:RHECIAT_PC0000697 probable small heat shock protein
YP_002978923.1	KEGG: ret:RHE_CH01240 hypothetical protein
YP_002978925.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_PE00253 hypothetical protein
YP_002978926.1	KEGG: cak:Caul_3297 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS domain containing protein
YP_002978927.1	KEGG: rec:RHECIAT_PB0000073 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002978928.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rec:RHECIAT_PC0000303  alcohol dehydrogenase protein
YP_002978929.1	KEGG: ret:RHE_PB00040 hypothetical protein
YP_002978932.1	KEGG: rec:RHECIAT_CH0002822 hypothetical protein
YP_002978933.1	KEGG: ret:RHE_PF00063 hypothetical protein
YP_002978934.1	KEGG: ret:RHE_PF00062 hypothetical protein
YP_002978935.1	SMART: regulatory protein Crp; KEGG: rec:RHECIAT_PC0000048 hypothetical protein
YP_002978936.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ret:RHE_PF00120  two-component response regulator protein
YP_002978938.1	KEGG: ret:RHE_PF00054 hypothetical protein
YP_002978939.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: smd:Smed_4042 thiamine pyrophosphate protein domain protein TPP-binding
YP_002978940.1	KEGG: rec:RHECIAT_PC0000288  diheme cytochrome c-type signal-peptide protein
YP_002978941.1	PFAM: protein of unknown function DUF1003; KEGG: smd:Smed_3877 protein of unknown function DUF1003
YP_002978943.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: ret:RHE_PB00050  oxidoreductase protein
YP_002978944.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ret:RHE_PB00051  oxidoreductase protein
YP_002978945.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_PC0000296 probable UDP-glucose 4-epimerase protein
YP_002978946.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_PC0000295 probable nucleoside diphosphate epimerase protein
YP_002978947.1	PFAM: glycosyl transferase group 1; KEGG: smd:Smed_3889 glycosyl transferase group 1
YP_002978948.1	KEGG: ret:RHE_PB00055 hypothetical protein
YP_002978949.1	KEGG: ret:RHE_PB00056 hypothetical protein
YP_002978950.1	KEGG: rec:RHECIAT_PC0000291 hypothetical protein
YP_002978951.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ret:RHE_PB00058 dTDP-glucose 4,6-dehydratase protein
YP_002978952.1	PFAM: Methyltransferase type 11; methyltransferase ; Methyltransferase type 12; KEGG: rec:RHECIAT_PC0000289  methyltransferase protein
YP_002978953.1	KEGG: ret:RHE_PF00053 hypothetical protein
YP_002978954.1	KEGG: rec:RHECIAT_PC0000523 hypothetical protein
YP_002978956.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_PC0000304  oxidoreductase protein
YP_002978957.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_PC0000039 probable RNA polymerase sigma-E factor protein (sigma-24), ECF family
YP_002978958.1	PFAM: protein of unknown function DUF892; KEGG: rec:RHECIAT_PC0000038 hypothetical protein
YP_002978959.1	KEGG: rec:RHECIAT_PC0000280 hypothetical protein
YP_002978960.1	KEGG: ret:RHE_CH01080 hypothetical protein
YP_002978961.1	KEGG: ret:RHE_CH01081 hypothetical protein
YP_002978963.1	KEGG: rec:RHECIAT_PC0000053 hypothetical protein
YP_002978964.1	KEGG: rec:RHECIAT_PC0000054 hypothetical protein
YP_002978966.1	KEGG: dehydrogenase/flavin-dependent oxidoreductase protein
YP_002978967.1	KEGG: ret:RHE_PF00044 hypothetical protein; SNP /replace=G
YP_002978968.1	KEGG: mlo:mlr7120 AgaE protein, conversion of agropinic acid to mannopinic acid
YP_002978969.1	KEGG: dnaE; DNA polymerase III alpha chain ; K02337 DNA    polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_002978970.1	KEGG: rec:RHECIAT_CH0003329 hypothetical protein
YP_002978971.1	KEGG: hypothetical protein
YP_002978972.1	KEGG: rec:RHECIAT_PC0000606 hypothetical protein
YP_002978973.1	KEGG: ret:RHE_CH02735  L-sorbosone dehydrogenase protein
YP_002978974.1	PFAM: glycosyl transferase group 1; KEGG: smd:Smed_5684 glycosyl transferase group 1
YP_002978975.1	KEGG: smd:Smed_5685 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like
YP_002978976.1	PFAM: glycosyl transferase group 1; oxidoreductase domain protein; Oxidoreductase domain; Alcohol dehydrogenase zinc-binding domain protein; KEGG: smd:Smed_5686 glycosyl transferase group 1
YP_002978977.1	PFAM: glycosyl transferase group 1; KEGG: smd:Smed_5687 glycosyl transferase group 1
YP_002978978.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: atc:AGR_pAT_398 hypothetical oxidoreductase IN CITA-SSPB intergenic region
YP_002978979.1	PFAM: protein of unknown function DUF892; KEGG: rec:RHECIAT_PC0000038 hypothetical protein
YP_002978980.1	KEGG: rec:RHECIAT_CH0001318 hypothetical protein
YP_002978981.1	KEGG: ret:RHE_PF00059 hypothetical protein
YP_002978982.1	PFAM: protein of unknown function DUF1470; KEGG: rec:RHECIAT_PC0000141 hypothetical protein
YP_002978983.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_PC0000142 hypothetical conserved membrane protein
YP_002978984.1	KEGG: ret:RHE_CH01082 nutrient deprivation-induced protein
YP_002978985.1	PFAM: protein of unknown function DUF1469; KEGG: ret:RHE_CH01083 nutrient deprivation-induced protein
YP_002978986.1	KEGG: ret:RHE_CH01084 nutrient deprivation-induced protein
YP_002978988.1	KEGG: rec:RHECIAT_CH0003150 hypothetical protein
YP_002978990.1	PFAM: protein of unknown function DUF982; KEGG: smd:Smed_4387 protein of unknown function DUF982
YP_002978991.1	KEGG: bbt:BBta_6062 hypothetical protein
YP_002978992.1	KEGG: bja:bll6124 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE2 domain protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002978993.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rec:RHECIAT_CH0001812 probable two-component response regulator protein
YP_002978994.1	PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1897 major facilitator transporter
YP_002978997.1	catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_002978998.1	KEGG: smd:Smed_5311 hypothetical protein
YP_002978999.1	PFAM: heat shock protein Hsp20; KEGG: atc:AGR_pAT_69 small heat shock protein HspB
YP_002979000.1	PFAM: protein of unknown function DUF982; KEGG: atu:Atu5053 hypothetical protein
YP_002979001.1	KEGG: atc:AGR_pAT_73 hypothetical protein
YP_002979003.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rpb:RPB_4041 response regulator receiver domain-containing protein
YP_002979006.1	KEGG: gbe:GbCGDNIH1_2332 sensory transduction protein kinase
YP_002979007.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0003075 probable two-component response regulator protein
YP_002979009.1	PFAM: porin; KEGG: rec:RHECIAT_CH0002083 outer membrane protein
YP_002979010.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mlo:msr0960 hypothetical protein
YP_002979011.1	KEGG: ypk:y3376 hypothetical protein
YP_002979012.1	PFAM: Patatin; KEGG: hypothetical protein
YP_002979013.1	PFAM: acriflavin resistance protein; KEGG: Acr family transporter
YP_002979014.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: HlyD family secretion protein
YP_002979015.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nodT; nodulation protein T precursor
YP_002979016.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: two-component response regulator protein ; K07662 two-component system, OmpR family, response regulator CpxR
YP_002979018.1	KEGG: rru:Rru_A2948 hypothetical protein
YP_002979019.1	KEGG: sme:SMa1706 hypothetical protein
YP_002979021.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pag:PLES_41911  transcriptional regulator
YP_002979022.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: galE; UDP-glucose 4-epimerase
YP_002979023.1	PFAM: aldo/keto reductase; KEGG: bpy:Bphyt_4529 aldo/keto reductase
YP_002979024.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_PE00404 oxidoreductase protein
YP_002979025.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sus:Acid_5930 short-chain dehydrogenase/reductase SDR
YP_002979026.1	PFAM: extracellular solute-binding protein family 1; KEGG: bacterial extracellular solute-binding protein
YP_002979027.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: malF; ABC transporter membrane spanning protein (maltose)
YP_002979028.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aglG; ABC transporter membrane spanning protein ; K02026 multiple sugar transport system permease protein
YP_002979029.1	KEGG: hypothetical protein
YP_002979030.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: transcriptional regulator LacI family ; K02529 LacI family transcriptional regulator
YP_002979031.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: smd:Smed_4163 ABC transporter related
YP_002979032.1	KEGG: hypothetical protein
YP_002979033.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase/reductase SDR precursor ; K00059 3-oxoacyl-
YP_002979034.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azc:AZC_4370  dehydrogenase
YP_002979035.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bcs:BCAN_A0681 dihydroorotase
YP_002979036.1	PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bbr:BB0539 hypothetical protein
YP_002979037.1	PFAM: polysaccharide deacetylase; KEGG: bbr:BB0695  polysaccharide deacetylase
YP_002979038.1	PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: azc:AZC_4371  short-chain dehydrogenase
YP_002979039.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bav:BAV0621 short chain dehydrogenase/reductase
YP_002979040.1	TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: reh:H16_A3075 D-hydantoinase
YP_002979041.1	PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A0226 major facilitator transporter
YP_002979042.1	KEGG: sil:SPO3046 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMC domain protein; SMART: AAA ATPase
YP_002979043.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dppCf; dipeptide ABC transporter ; K02034 peptide/nickel transport system permease protein
YP_002979044.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll1659 permease protein of oligopeptide ABC transporter
YP_002979045.1	PFAM: extracellular solute-binding protein family 5; KEGG: mlo:mlr8282 hypothetical protein
YP_002979046.1	PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rde:RD1_2634 transcriptional regulator, AraC family
YP_002979047.1	KEGG: hypothetical protein
YP_002979048.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mlr7095 sugar ABC transporter, ATP-binding protein
YP_002979049.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7094 ABC transporter, permease protein
YP_002979050.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7093 ABC transporter, permease protein
YP_002979051.1	PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr7091 sugar ABC transporter, periplasmic binding protein
YP_002979052.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: mlo:mlr7090 transcriptional regulator
YP_002979053.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mlo:mll7089 mandelate racemase
YP_002979054.1	PFAM: TspO/MBR family protein; KEGG: tspO; tryptophan-rich sensory protein ; K07185 tryptophan-rich sensory protein
YP_002979055.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B1289  transcriptional regulator, LysR family
YP_002979056.1	KEGG: mpt:Mpe_A3666 hypothetical protein
YP_002979057.1	PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bja:bll3347 hypothetical protein; SNP /replace=C
YP_002979058.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cps:CPS_2972 FMN-dependent NADH-azoreductase
YP_002979059.1	PFAM: Amidase; KEGG: pfl:PFL_1361 hypothetical protein
YP_002979060.1	PFAM: polysaccharide deacetylase; KEGG: sit:TM1040_0328 polysaccharide deacetylase
YP_002979061.1	KEGG: yen:YE0806 hypothetical protein
YP_002979062.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sit:TM1040_0322 LysR family transcriptional regulator
YP_002979063.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5936 xylose isomerase domain-containing protein
YP_002979064.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sus:Acid_2859 alcohol dehydrogenase
YP_002979066.1	KEGG: pen:PSEEN0847 hypothetical protein
YP_002979067.1	PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: oan:Oant_4761 histone family protein DNA-binding protein
YP_002979068.1	KEGG: hypothetical protein
YP_002979070.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002979071.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sme:SMc02184  transcription regulator protein
YP_002979072.1	PFAM: DEAD/DEAH box helicase; TRCF domain protein; transcription factor CarD; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; KEGG: mno:Mnod_1599 DEAD/DEAH box helicase
YP_002979073.1	PFAM: alpha/beta hydrolase fold; KEGG: epoxide hydrolase protein
YP_002979074.1	PFAM: major royal jelly protein; KEGG: mrd:Mrad2831_6245 hypothetical protein
YP_002979075.1	KEGG: mlo:mll8067 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein
YP_002979076.1	PFAM: HWE histidine kinase; KEGG: atc:AGR_pAT_130 hypothetical protein
YP_002979077.1	KEGG: atc:AGR_pAT_129 hypothetical protein; PFAM: KaiA binding; SMART: AAA ATPase
YP_002979079.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: ccs:CCNA_03285 magnesium and cobalt transport protein CorA
YP_002979081.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: met:M446_5631 metal dependent phosphohydrolase
YP_002979083.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: bpt:Bpet3003 hypothetical protein
YP_002979084.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr7675  quinone oxidoreductase
YP_002979085.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bph:Bphy_3555 metal dependent phosphohydrolase
YP_002979087.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: azc:AZC_1362 two-component response regulator
YP_002979088.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: nodW; two-component nodulation response regulator protein
YP_002979089.1	KEGG: bpy:Bphyt_2428 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; tyrosine protein kinase; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; serine/threonine protein kinase; histidine kinase A domain protein; PAS domain containing protein
YP_002979091.1	KEGG: rec:RHECIAT_PA0000289 hypothetical protein
YP_002979092.1	KEGG: ret:RHE_PC00096 hypothetical protein
YP_002979093.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: atc:AGR_L_3471 hypothetical protein
YP_002979094.1	PFAM: regulatory protein TetR; KEGG: atc:AGR_L_3469 hypothetical protein
YP_002979096.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: short-chain dehydrogenase protein
YP_002979097.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpc:RPC_3421 short-chain dehydrogenase/reductase SDR
YP_002979098.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bra:BRADO3708 LysR family transcriptional regulator
YP_002979099.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smd:Smed_2363 transcriptional regulator, LysR family
YP_002979100.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mno:Mnod_3453 alcohol dehydrogenase zinc-binding domain protein
YP_002979101.1	KEGG: ret:RHE_CH00433 hypothetical protein
YP_002979102.1	PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; KEGG: mes:Meso_4076 histidine kinase
YP_002979103.1	PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: atc:AGR_C_3007 hypothetical protein
YP_002979104.1	KEGG: psp:PSPPH_0943 circadian oscillation regulator KaiC-like protein; PFAM: KaiA binding; Circadian clock protein KaiC central region; SMART: AAA ATPase
YP_002979105.1	KEGG: psb:Psyr_2450 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein
YP_002979106.1	KEGG: rec:RHECIAT_PC0000054 hypothetical protein
YP_002979107.1	KEGG: rec:RHECIAT_PC0000053 hypothetical protein
YP_002979108.1	KEGG: rec:RHECIAT_PC0000054 hypothetical protein
YP_002979110.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH01085  esterase protein
YP_002979111.1	KEGG: smd:Smed_5308 hypothetical protein
YP_002979112.1	SMART: response regulator receiver; KEGG: ret:RHE_PF00120  two-component response regulator protein
YP_002979113.1	KEGG: ret:RHE_PB00043 hypothetical protein
YP_002979114.1	KEGG: rru:Rru_A2294 alpha amylase, catalytic region
YP_002979116.1	KEGG: rec:RHECIAT_PC0000148 hypothetical protein
YP_002979117.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO4879  short-chain dehydrogenase/reductase (modular)
YP_002979119.1	KEGG: rec:RHECIAT_PC0000454 hypothetical protein
YP_002979120.1	KEGG: smd:Smed_3780 hypothetical protein
YP_002979121.1	KEGG: smd:Smed_3779 hypothetical protein
YP_002979122.1	KEGG: atc:AGR_pAT_694 hypothetical protein
YP_002979124.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002979125.1	KEGG: rec:RHECIAT_CH0002664 hypothetical protein
YP_002979126.1	KEGG: sme:SM_b20236 hypothetical protein
YP_002979127.1	KEGG: rec:RHECIAT_PC0000150 hypothetical protein
YP_002979128.1	PFAM: UbiA prenyltransferase; KEGG: ret:RHE_CH03427  integral membrane prenyltransferase protein
YP_002979129.1	KEGG: ret:RHE_CH03426 hypothetical protein
YP_002979130.1	PFAM: FAD linked oxidase domain protein; KEGG: ret:RHE_CH03425  oxidoreductase protein
YP_002979131.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH03424 short chain dehydrogenase
YP_002979132.1	KEGG: rec:RHECIAT_PC0000155 hypothetical protein
YP_002979133.1	KEGG: ret:RHE_CH03422 hypothetical protein
YP_002979135.1	KEGG: rec:RHECIAT_CH0001677 NADH-ubiquinone oxidoreductase protein, chain C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit
YP_002979136.1	KEGG: nouD; NADH ubiquinone oxidoreductase chain D ; K00333   NADH dehydrogenase I subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa
YP_002979137.1	TIGRFAM: cyanophycinase; PFAM: peptidase S51 dipeptidase E; KEGG: cps:CPS_1870 cyanophycinase
YP_002979138.1	PFAM: peptidase T2 asparaginase 2; KEGG: dvu:DVU2242 asparaginase family protein
YP_002979139.1	TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; RimK domain protein ATP-grasp; KEGG: cps:CPS_1871 cyanophycin synthetase; SNP /replace=T
YP_002979141.1	PFAM: protein of unknown function DUF892; KEGG: ret:RHE_PF00058 hypothetical protein
YP_002979142.1	KEGG: bpd:BURPS668_A0145 hypothetical protein
YP_002979143.1	PFAM: manganese containing catalase; KEGG: smd:Smed_6390 catalase
YP_002979144.1	KEGG: oan:Oant_4636 heat shock protein HSP20
YP_002979145.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_002979147.1	KEGG: mrd:Mrad2831_4921 hypothetical protein
YP_002979148.1	KEGG: rec:RHECIAT_PB0000025 hypothetical conserved membrane protein
YP_002979149.1	PFAM: protein of unknown function DUF982; KEGG: atc:AGR_C_3319 hypothetical protein
YP_002979150.1	PFAM: beta-lactamase domain protein; KEGG: mes:Meso_3529 beta-lactamase-like
YP_002979151.1	TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bms:BR1903 succinate dehydrogenase, hydrophobic membrane anchor protein
YP_002979152.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_PF00052 RNA polymerase sigma-E factor
YP_002979153.1	KEGG: mes:Meso_0331 hypothetical protein
YP_002979154.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bxe:Bxe_B2482  zinc-containing dehydrogenase
YP_002979155.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ret:RHE_PF00060 hypothetical protein
YP_002979156.1	TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: mlo:mll9633 formate dehydrogenase
YP_002979157.1	KEGG: mlo:mll9632 cytochrome c oxidase subunit III
YP_002979158.1	TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: ret:RHE_PB00065 cytochrome c oxidase subunit II protein
YP_002979159.1	KEGG: mlo:mll9630 cytochrome c oxidase subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_002979160.1	PFAM: cytochrome c oxidase subunit III; KEGG: ret:RHE_PB00063  cytochrome c oxidase subunit III protein
YP_002979161.1	KEGG: rec:RHECIAT_PC0000287  cytochrome c protein, class I
YP_002979162.1	KEGG: rec:RHECIAT_PC0000288  diheme cytochrome c-type signal-peptide protein
YP_002979163.1	PFAM: protein of unknown function DUF1452; KEGG: bcn:Bcen_1288 hypothetical protein
YP_002979164.1	PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002174  hydrolase protein
YP_002979165.1	KEGG: nwi:Nwi_2311 hypothetical protein
YP_002979166.1	PFAM: NmrA family protein; KEGG: rpc:RPC_1503 NmrA-like
YP_002979167.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rpc:RPC_1502 AraC family transcriptional regulator
YP_002979168.1	KEGG: rec:RHECIAT_CH0003417 hypothetical protein
YP_002979169.1	KEGG: atc:AGR_pAT_694 hypothetical protein
YP_002979170.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002979171.1	PFAM: protein of unknown function DUF892; KEGG: ret:RHE_PF00051 hypothetical protein
YP_002979172.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ret:RHE_PF00137 thioredoxin reductase (NADPH) protein
YP_002979174.1	KEGG: mch:Mchl_3374 transcriptional regulator, Crp/Fnr family
YP_002979175.1	KEGG: mrd:Mrad2831_2158 hypothetical protein
YP_002979176.1	KEGG: ret:RHE_PF00328 hypothetical protein
YP_002979177.1	PFAM: Usg family protein; KEGG: ret:RHE_CH01237 phosphoribosylanthranilate isomerase subunit
YP_002979178.1	PFAM: chaperonin Cpn10; KEGG: ret:RHE_PF00329 10 kDa chaperonin, heat shock protein
YP_002979179.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_002979180.1	KEGG: ret:RHE_CH01240 hypothetical protein
YP_002979181.1	PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0001328  glycosyltransferase protein
YP_002979182.1	PFAM: Amylo-alpha-16-glucosidase; KEGG: ret:RHE_CH01242 hypothetical protein
YP_002979184.1	KEGG: bpy:Bphyt_5869 protein of unknown function DUF1486
YP_002979185.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: msl:Msil_3365 NADP oxidoreductase coenzyme F420-dependent
YP_002979186.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr5278 glucose dehydrogenase
YP_002979187.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr3992 transcriptional regulatory protein
YP_002979188.1	KEGG: sme:SM_b20413 hypothetical protein
YP_002979189.1	TIGRFAM: PIN domain protein family protein; PFAM: PilT protein domain protein; KEGG: bvi:Bcep1808_6071 PilT domain-containing protein
YP_002979192.1	PFAM: K potassium transporter; KEGG: mlo:mll1417 potassium uptake protein Kup
YP_002979193.1	PFAM: sodium/hydrogen exchanger; KEGG: rpc:RPC_1941 sodium/hydrogen exchanger
YP_002979195.1	PFAM: glycosyl transferase family 28; KEGG: nwi:Nwi_2852 glycosyl transferase family protein
YP_002979196.1	PFAM: protein of unknown function DUF326; KEGG: ret:RHE_CH02512 hypothetical protein
YP_002979197.1	PFAM: protein of unknown function DUF305; KEGG: ret:RHE_CH02513 hypothetical protein
YP_002979199.1	KEGG: rec:RHECIAT_CH0003417 hypothetical protein
YP_002979200.1	KEGG: atc:AGR_pAT_694 hypothetical protein
YP_002979201.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002979202.1	KEGG: rru:Rru_A0538 hypothetical protein
YP_002979203.1	PFAM: protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A0537 hypothetical protein
YP_002979205.1	KEGG: rec:RHECIAT_CH0003417 hypothetical protein
YP_002979206.1	KEGG: atc:AGR_pAT_694 hypothetical protein
YP_002979207.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002979208.1	TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: bja:blr0513 succinate dehydrogenase hydrophobic membrane anchor protein subunit
YP_002979209.1	PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: rpsD; ribosomal protein S4 ; K02986 small subunit ribosomal protein S4
YP_002979210.1	KEGG: ret:RHE_PF00065  two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_002979211.1	PFAM: protein of unknown function DUF378; KEGG: rsq:Rsph17025_0607 hypothetical protein
YP_002979212.1	KEGG: rce:RC1_3376 hypothetical protein; SNP /replace=G
YP_002979213.1	KEGG: xcv:XCV2756 hypothetical protein
YP_002979214.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SM_b20076 short chain dehydrogenase
YP_002979215.1	KEGG: mch:Mchl_4521 hypothetical protein
YP_002979216.1	KEGG: pmy:Pmen_3125 hypothetical protein
YP_002979217.1	KEGG: ret:RHE_PF00053 hypothetical protein
YP_002979218.1	PFAM: alpha/beta hydrolase fold; KEGG: rpt:Rpal_3816 alpha/beta hydrolase fold
YP_002979219.1	KEGG: ret:RHE_PF00120  two-component response regulator protein
YP_002979220.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: bra:BRADO3944 oxidoreductase NAD(P)-binding subunit
YP_002979221.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PB00044  short chain oxidoreductase protein; SNP /replace=A; SNP /replace=A
YP_002979222.1	KEGG: rec:RHECIAT_PA0000166 hypothetical protein
YP_002979223.1	KEGG: ret:RHE_PE00211 hypothetical protein
YP_002979224.1	KEGG: ret:RHE_PB00039 hypothetical protein
YP_002979226.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: sme:SM_b21448  DNA polymerase related protein
YP_002979227.1	KEGG: mpo:Mpop_0752 hypothetical protein
YP_002979228.1	KEGG: sme:SM_b20088 hypothetical protein; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: Erythromycin esterase; protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_002979229.1	KEGG: smd:Smed_2023 hypothetical protein
YP_002979230.1	KEGG: met:M446_5492 hypothetical protein
YP_002979231.1	KEGG: rec:RHECIAT_PC0000454 hypothetical protein
YP_002979232.1	PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mlo:mll4526 transcriptional regulatory
YP_002979233.1	KEGG: gur:Gura_3576 hypothetical protein
YP_002979235.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002979236.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: oan:Oant_1848 transcriptional regulator, XRE family
YP_002979237.1	KEGG: pde:Pden_3157 plasmid pRiA4b ORF-3 family protein
YP_002979240.1	KEGG: rec:RHECIAT_CH0000474 hypothetical protein
YP_002979241.1	KEGG: hypothetical protein
YP_002979242.1	KEGG: ret:RHE_CH00434 hypothetical protein
YP_002979243.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0000476 probable cold shock protein
YP_002979244.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rec:RHECIAT_CH0003075 probable two-component response regulator protein
YP_002979246.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: psb:Psyr_2743 lysine exporter protein LysE/YggA
YP_002979248.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: swi:Swit_3974 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_002979249.1	PFAM: DoxX family protein; KEGG: bpy:Bphyt_5146 DoxX family protein
YP_002979250.1	KEGG: rpe:RPE_1949 hypothetical protein
YP_002979251.1	PFAM: protein of unknown function DUF692; KEGG: rpe:RPE_1948 hypothetical protein
YP_002979252.1	KEGG: bra:BRADO7096 hypothetical protein
YP_002979253.1	PFAM: K potassium transporter; KEGG: mlo:mll1417 potassium uptake protein Kup
YP_002979254.1	PFAM: sodium/hydrogen exchanger; KEGG: rpc:RPC_1941 sodium/hydrogen exchanger
YP_002979255.1	PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: nwi:Nwi_2852 glycosyl transferase family protein
YP_002979256.1	KEGG: rec:RHECIAT_CH0001455 hypothetical protein
YP_002979257.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_002979258.1	TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: pca:Pcar_2528 caa3-type cytochrome c oxidase, subunit IV
YP_002979259.1	PFAM: cytochrome c oxidase subunit III; KEGG: mno:Mnod_6884 cytochrome c oxidase subunit III
YP_002979260.1	KEGG: noc:Noc_1245 cytochrome c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_002979261.1	TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: reu:Reut_B4435 cytochrome c oxidase, subunit II:cytochrome c, class I:cytochrome c oxidase subunit II, transmembrane region
YP_002979262.1	KEGG: sus:Acid_0496 electron transport protein SCO1/SenC
YP_002979263.1	KEGG: gdj:Gdia_0830 hypothetical protein
YP_002979264.1	KEGG: nha:Nham_4183 hypothetical protein
YP_002979265.1	KEGG: mpo:Mpop_0021 hypothetical protein
YP_002979266.1	KEGG: sus:Acid_0492 transmembrane prediction
YP_002979267.1	PFAM: Polysulphide reductase NrfD; KEGG: aba:Acid345_3002 polysulphide reductase, NrfD
YP_002979268.1	KEGG: mrd:Mrad2831_1043 molybdopterin oxidoreductase, iron-sulfur binding subunit
YP_002979269.1	KEGG: met:M446_5825 chaperone protein HtpG
YP_002979270.1	PFAM: protein of unknown function DUF1058; KEGG: hypothetical protein
YP_002979271.1	KEGG: sme:SMa1192 hypothetical protein
YP_002979272.1	KEGG: bac:BamMC406_6732 hypothetical protein
YP_002979274.1	KEGG: ret:RHE_CH03931 hypothetical protein
YP_002979275.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bbr:BB2470 hypothetical protein
YP_002979276.1	PFAM: protein of unknown function UPF0118; KEGG: mlo:mlr4869 hypothetical protein
YP_002979277.1	KEGG: mlo:msl1788 hypothetical protein
YP_002979278.1	KEGG: rpt:Rpal_3825 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone
YP_002979283.1	PFAM: Chloride channel core; KEGG: chloride channel protein
YP_002979284.1	KEGG: bbt:BBta_6668 hypothetical protein
YP_002979285.1	KEGG: sal:Sala_0113 hypothetical protein
YP_002979287.1	KEGG: glo:Glov_1418 hypothetical protein
YP_002979288.1	PFAM: Cold-shock protein DNA-binding; Ribonuclease B OB region domain; SMART: Cold shock protein; KEGG: cspA; cold shock protein ; K03704 cold shock protein (beta-ribbon, CspA family)
YP_002979289.1	PFAM: protein of unknown function DUF88; KEGG: hypothetical protein
YP_002979290.1	KEGG: rfr:Rfer_1186 hypothetical protein
YP_002979292.1	PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: eum:ECUMN_2971 conserved hypothetical protein from bactreriophage origin; putative CBS domain
YP_002979293.1	KEGG: nar:Saro_3943 hypothetical protein
YP_002979294.1	KEGG: nar:Saro_3944 hypothetical protein
YP_002979295.1	KEGG: nar:Saro_3947 HSP90 family molecular chaperone-like protein
YP_002979296.1	PFAM: Radical SAM domain protein; KEGG: nar:Saro_3946 radical SAM domain-containing protein
YP_002979297.1	TIGRFAM: DGQHR domain protein; KEGG: nar:Saro_3945 hypothetical protein
YP_002979298.1	KEGG: ecm:EcSMS35_4320 hypothetical protein
YP_002979299.1	PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: mxa:MXAN_7274 SNF2/helicase domain protein
YP_002979302.1	KEGG: ppd:Ppro_0239 hypothetical protein
YP_002979303.1	PFAM: protein of unknown function DUF1612; KEGG: atc:AGR_pAT_23 hypothetical protein
YP_002979304.1	TIGRFAM: prevent-host-death family protein; KEGG: rec:RHECIAT_PC0000869 hypothetical protein
YP_002979305.1	KEGG: rec:RHECIAT_PC0000870 hypothetical protein
YP_002979306.1	KEGG: sme:SMa2255 hypothetical protein
YP_002979307.1	PFAM: integrase family protein; KEGG: ret:RHE_PA00002 site-specific integrase protein
YP_002979308.1	PFAM: Rv0623 family protein transcription factor; KEGG: rru:Rru_A1269 transcription factor
YP_002979309.1	PFAM: PilT protein domain protein; KEGG: nha:Nham_4577 PilT protein-like
YP_002979310.1	PFAM: replication protein C; KEGG: ret:RHE_PC00234 plasmid replication protein RepCc
YP_002979311.1	KEGG: ret:RHE_PC00233 plasmid partitioning protein RepBc; TIGRFAM: plasmid partitioning protein RepB; parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; SMART: ParB domain protein nuclease
YP_002979312.1	TIGRFAM: plasmid partitioning protein RepA; PFAM: Cobyrinic acid ac-diamide synthase; regulatory protein MerR; KEGG: ret:RHE_PC00232 plasmid partitioning protein RepAc
YP_002979313.1	KEGG: ret:RHE_PC00229 hypothetical protein
YP_002979314.1	KEGG: ret:RHE_PC00228 trehalose-phosphatase protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; trehalose-phosphatase; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase type 3
YP_002979315.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PC00227 AraC family transcriptional regulator
YP_002979316.1	KEGG: ret:RHE_PC00226 putative sugar ABC transporter, substrate-binding protein
YP_002979317.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00225 sugar ABC transporter, ATP-binding protein
YP_002979318.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00224 sugar ABC transporter, permease protein
YP_002979319.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PC00223 ribitol 2-dehydrogenase protein
YP_002979320.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_PC00222 short chain dehydrogenase/reductase family oxidoreductase
YP_002979321.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: hypothetical protein
YP_002979322.1	KEGG: hypothetical protein
YP_002979323.1	PFAM: regulatory protein TetR; KEGG: transcriptional regulator protein
YP_002979324.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bid:Bind_3301 integral membrane sensor signal transduction histidine kinase
YP_002979325.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bra:BRADO3955 OmpR family two-component transcriptional regulator
YP_002979326.1	KEGG: bja:blr7618 hypothetical protein
YP_002979327.1	KEGG: smd:Smed_3631 hypothetical protein
YP_002979328.1	KEGG: ret:RHE_PC00209 autoaggregation protein
YP_002979330.1	KEGG: hypothetical protein
YP_002979331.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002979333.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ret:RHE_PC00206 hypothetical protein
YP_002979334.1	PFAM: Domain of unknown function DUF1814; KEGG: smd:Smed_5454 domain of unknown function DUF1814
YP_002979335.1	KEGG: smd:Smed_5453 hypothetical protein
YP_002979336.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_PC00205 LysR family transcriptional regulator
YP_002979337.1	PFAM: aldo/keto reductase; KEGG: ret:RHE_PC00204 putative oxidoreductase
YP_002979338.1	PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rce:RC1_2728 colicin V secretion
YP_002979339.1	PFAM: secretion protein HlyD family protein; KEGG: rce:RC1_2734 HlyD family secretion protein
YP_002979340.1	KEGG: mex:Mext_0452 hypothetical protein
YP_002979342.1	KEGG: hypothetical protein
YP_002979343.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; KEGG: bpt:Bpet2621 putative peptidase
YP_002979344.1	PFAM: protein of unknown function DUF344; KEGG: ret:RHE_PC00203 hypothetical protein
YP_002979345.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: transcriptional regulator
YP_002979346.1	KEGG: hypothetical protein
YP_002979347.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: met:M446_0008 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_002979348.1	KEGG: ret:RHE_PC00202 putative oxidoreductase protein
YP_002979349.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PC00201 sugar ABC transporter, ATP-binding protein
YP_002979350.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00200 sugar ABC transporter, permease protein
YP_002979351.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00199 sugar ABC transporter, permease protein
YP_002979352.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00198 sugar ABC transporter, substrate-binding protein
YP_002979353.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PC00197 putative myo-inositol catabolism protein
YP_002979354.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_PC00196 LacI family transcription regulator
YP_002979355.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: xac:XAC2429 hypothetical protein
YP_002979356.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: xac:XAC2428 hypothetical protein
YP_002979357.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ret:RHE_PC00192 acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_002979358.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; protein of unknown function DUF201; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: ret:RHE_PC00191 acetyl-CoA carboxylase, biotin carboxylase protein
YP_002979359.1	KEGG: ret:RHE_PC00190 hypothetical protein
YP_002979360.1	PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: ret:RHE_PC00189 hypothetical protein
YP_002979361.1	KEGG: ret:RHE_PC00188 hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2
YP_002979362.1	PFAM: LamB/YcsF family protein; KEGG: ret:RHE_PC00187 hypothetical protein
YP_002979363.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002979364.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_PC00185 LysR family transcriptional regulator
YP_002979365.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_PC00184 short chain dehydrogenase/reductase family oxidoreductase
YP_002979366.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00183 amino acid ABC transporter permease
YP_002979367.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00182 amino acid ABC transporter permease
YP_002979368.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00181 amino acid ABC transporter ATP-binding protein
YP_002979369.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00180 amino acid ABC transporter substrate-binding protein
YP_002979370.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: atc:AGR_L_1159 hypothetical protein
YP_002979371.1	KEGG: ret:RHE_PC00178 hypothetical protein
YP_002979372.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ret:RHE_PC00177 hypothetical protein
YP_002979373.1	PFAM: Endoribonuclease L-PSP; KEGG: ret:RHE_PC00176 hypothetical protein
YP_002979374.1	KEGG: ret:RHE_PC00175 hypothetical protein
YP_002979375.1	PFAM: amidohydrolase 2; KEGG: ret:RHE_PC00174 hypothetical protein
YP_002979376.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00173 sugar ABC transporter, permease protein
YP_002979377.1	PFAM: inner-membrane translocator; KEGG: bms:BRA0994 ribose ABC transporter, permease protein
YP_002979378.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00172 sugar ABC transporter, ATP-binding protein
YP_002979379.1	KEGG: ret:RHE_PC00171 sugar ABC transporter, substrate-binding protein
YP_002979380.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ret:RHE_PC00170 IclR family transcriptional regulator
YP_002979381.1	KEGG: ret:RHE_PC00169 monooxygenase protein
YP_002979382.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00168 aliphatic sulfonate ABC transporter permease
YP_002979383.1	KEGG: ret:RHE_PC00167 aliphatic sulfonate ABC transporter substrate-binding protein
YP_002979384.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00166 aliphatic sulfonate ABC transporter ATP-binding protein
YP_002979385.1	PFAM: Chloride channel core; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: ret:RHE_PC00165 chloride channel protein
YP_002979386.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ret:RHE_PC00164 MarR family transcriptional regulator
YP_002979387.1	PFAM: homocysteine S-methyltransferase; KEGG: ret:RHE_PC00163 homocysteine S-methyltransferase protein
YP_002979388.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00162 amino acid ABC transporter permease
YP_002979389.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00161 amino acid ABC transporter permease
YP_002979390.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00160 amino acid ABC transporter substrate-binding protein
YP_002979391.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00159 amino acid ABC transporter ATP-binding protein
YP_002979392.1	PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_PC00158 AsnC family transcriptional regulator
YP_002979393.1	KEGG: ret:RHE_PC00157 two-component sensor histidine kinase protein; PFAM: Cache type 2 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_002979394.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; LexA DNA-binding domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: ret:RHE_PC00156 two-component response regulator protein
YP_002979395.1	KEGG: ret:RHE_PC00155 hypothetical protein
YP_002979396.1	PFAM: Na+/solute symporter; KEGG: ret:RHE_PC00154 monocarboxylic acid permease protein
YP_002979397.1	PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ret:RHE_PC00153 methyl-accepting chemotaxis protein
YP_002979398.1	PFAM: Luciferase-like monooxygenase; KEGG: ret:RHE_PC00151 putative FMNH2-dependent aliphatic sulfonate monooxygenase protein
YP_002979399.1	KEGG: scl:sce5568 nitrilotriacetate monooxygenase component A
YP_002979400.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0167 ABC transporter ATP-binding protein
YP_002979401.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9180 permease of ABC transporter
YP_002979402.1	KEGG: mlo:mll9181 hypothetical protein
YP_002979403.1	KEGG: ret:RHE_PC00150 hypothetical protein
YP_002979404.1	KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein
YP_002979405.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00148 sugar ABC transporter, permease protein
YP_002979406.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00147 sugar ABC transporter, ATP-binding protein
YP_002979407.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: ret:RHE_PC00146 6-phosphogluconatedehydrogenase protein
YP_002979408.1	KEGG: ret:RHE_PC00145 gluconate kinase protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase
YP_002979409.1	catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate
YP_002979410.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ret:RHE_PC00143 D-2-hydroxyacid dehydrogensase protein
YP_002979411.1	PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ret:RHE_PC00142 L-idonate 5-dehydrogenase protein
YP_002979412.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ret:RHE_PC00141 LacI family transcription regulator
YP_002979413.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ret:RHE_PC00140 gluconolactonase protein
YP_002979414.1	PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: ret:RHE_PC00139 hypothetical protein
YP_002979415.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: ret:RHE_PC00138 RNA polymerase sigma-E factor
YP_002979416.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ret:RHE_PC00137 lipase/esterase protein
YP_002979417.1	PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: ret:RHE_PC00136 hypothetical protein
YP_002979418.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00133 peptide ABC transporter, ATP-binding protein
YP_002979419.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00132 peptide ABC transporter, permease protein
YP_002979420.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00131 peptide ABC transporter, permease protein
YP_002979421.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PC00130 peptide ABC transporter, substrate-binding protein
YP_002979422.1	catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA
YP_002979423.1	PFAM: CoA-binding domain protein; KEGG: ret:RHE_PC00128 acyl-CoA synthetase protein
YP_002979424.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PC00127 acyl-CoA dehydrogenase protein
YP_002979425.1	Converts (S)-3-hydroxyacyl-CoA to 3-oxyacyl-CoA; may also act as a thioesterase
YP_002979426.1	PFAM: protein of unknown function DUF849; KEGG: ret:RHE_PC00125 hypothetical protein
YP_002979427.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PC00124 AraC family transcriptional regulator
YP_002979428.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_PC00123 LysR family transcriptional regulator
YP_002979429.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_PC00122 hypothetical protein
YP_002979430.1	TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ret:RHE_PC00119 glutathione-independent formaldehyde dehydrogenase protein
YP_002979431.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00118 amino acid ABC transporter substrate-binding protein
YP_002979432.1	KEGG: ret:RHE_PC00117 putative kinase/esterase protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002979433.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PC00116 hypothetical protein
YP_002979434.1	TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: speB; agmatinase ; K01480 agmatinase
YP_002979435.1	PFAM: aminotransferase class I and II; KEGG: aspB2; aspartate transaminase protein
YP_002979436.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_PC0000729 putative flavin reductase protein
YP_002979437.1	KEGG: monooxygenase protein
YP_002979438.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: transcriptional regulator protein
YP_002979439.1	PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: hutC; histidine utilization repressor
YP_002979440.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: amino acid ABC transporter
YP_002979441.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amino acid ABC transporter
YP_002979442.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amino acid ABC transporter
YP_002979443.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amino acid ABC transporter
YP_002979444.1	KEGG: ret:RHE_PE00109 hypothetical protein
YP_002979445.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PE00110 putative isochorismatase hydrolase protein
YP_002979446.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000087 probable sugar ABC transporter, ATP-binding protein
YP_002979447.1	TIGRFAM: ring-opening amidohydrolase; KEGG: cyanuric acid amidohydrolase
YP_002979448.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PE00112 putative isochorismatase protein
YP_002979449.1	formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate
YP_002979450.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PE00113 sugar ABC transporter, permease protein
YP_002979451.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000090 probable sugar ABC transporter, permease protein
YP_002979452.1	PFAM: basic membrane lipoprotein; KEGG: rec:RHECIAT_PC0000091 putative ABC transporter, substrate-binding protein
YP_002979453.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_PC0000092 probable transcriptional regulator protein, GntR family
YP_002979454.1	KEGG: rec:RHECIAT_PC0000679 nitrate ABC transporter, ATP-binding protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase
YP_002979455.1	TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00453 nitrate ABC transporter, permease protein
YP_002979456.1	KEGG: rec:RHECIAT_PC0000677 nitrate ABC transporter, substrate-binding protein
YP_002979457.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00085 sugar ABC transporter, permease protein
YP_002979458.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00086 sugar ABC transporter, permease protein
YP_002979459.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00087 sugar ABC transporter, ATP-binding protein
YP_002979460.1	PFAM: basic membrane lipoprotein; KEGG: ret:RHE_PC00088 hypothetical protein
YP_002979461.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ret:RHE_PC00089 hydrolase protein
YP_002979462.1	PFAM: Glutathione S-transferase domain; KEGG: ret:RHE_PC00090 glutathione S-transferase protein
YP_002979463.1	KEGG: ret:RHE_PC00091 hypothetical protein
YP_002979464.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_PC00092 oxidoreductase protein
YP_002979465.1	KEGG: ret:RHE_PC00093 hypothetical protein
YP_002979466.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbt:BBta_2294 transcriptional regulator
YP_002979467.1	KEGG: mlo:mll3417 hypothetical protein
YP_002979468.1	PFAM: beta-lactamase domain protein; KEGG: bbt:BBta_2292 metallo-beta-lactamase superfamily protein
YP_002979469.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fhuC; ABC transporter nucleotide binding/ATPase protein (ferrichrome) ; K02013 iron complex transport system ATP-binding protein
YP_002979470.1	PFAM: periplasmic binding protein; KEGG: fhuD; ABC transporter substrate binding protein (ferrichrome) ; K02016 iron complex transport system substrate-binding protein
YP_002979471.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_002979472.1	KEGG: esterase
YP_002979473.1	TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0156; KEGG: pmy:Pmen_2127 CopG/Arc/MetJ family transcriptional regulator
YP_002979474.1	KEGG: sme:SMa0572 hypothetical protein
YP_002979475.1	PFAM: PhnA protein; KEGG: mno:Mnod_7168 PhnA protein
YP_002979476.1	KEGG: xau:Xaut_4992 hypothetical protein
YP_002979477.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rec:RHECIAT_PC0000250 hypothetical protein
YP_002979478.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: pde:Pden_1534 filamentation induced by cAMP protein Fic
YP_002979480.1	KEGG: transposase
YP_002979481.1	KEGG: rec:RHECIAT_PB0000162 transport secretion system IV protein, VirB5
YP_002979482.1	KEGG: rec:RHECIAT_PC0000911 transport secretion system IV protein, VirB1
YP_002979483.1	KEGG: ret:RHE_PD00142 hypothetical protein
YP_002979484.1	KEGG: rec:RHECIAT_PC0000913 hypothetical protein
YP_002979485.1	PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1948 UbiA prenyltransferase
YP_002979486.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pna:Pnap_2974 haloacid dehalogenase domain protein hydrolase
YP_002979487.1	PFAM: GtrA family protein; KEGG: bat:BAS5286 GtrA family protein
YP_002979488.1	KEGG: hypothetical protein
YP_002979489.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002979490.1	PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: ret:RHE_PC00072 branched-chain alpha-keto acid dehydrogenase subunit E2
YP_002979491.1	PFAM: Transketolase central region; Transketolase domain protein; KEGG: ret:RHE_PC00071 2-oxoisovalerate dehydrogenase beta subunit protein
YP_002979492.1	PFAM: dehydrogenase E1 component; KEGG: ret:RHE_PC00070 2-oxoisovalerate dehydrogenase alpha subunit protein
YP_002979493.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PC00069 acyl-CoA dehydrogenase protein
YP_002979494.1	KEGG: ret:RHE_PC00068 thiolase protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_002979495.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PC00067 3-hydroxyacyl-CoA dehydrogenase protein
YP_002979496.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PC00066 AraC family transcriptional regulator
YP_002979497.1	TIGRFAM: prevent-host-death family protein; KEGG: xau:Xaut_5007 prevent-host-death family protein
YP_002979498.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PC00064 isovaleryl-CoA dehydrogenase protein
YP_002979499.1	PFAM: carboxyl transferase; KEGG: ret:RHE_PC00063 methylcrotonoyl-CoA carboxylase non-biotinylated subunit protein
YP_002979500.1	PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: ret:RHE_PC00062 methylcrotonoyl-CoA carboxylase biotinylated subunit protein
YP_002979501.1	PFAM: MaoC domain protein dehydratase; KEGG: ret:RHE_PC00061 putative amine oxidase protein
YP_002979502.1	PFAM: HpcH/HpaI aldolase; KEGG: ret:RHE_PC00060 citrate lyase, beta subunit protein
YP_002979503.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ret:RHE_PC00059 nodulation protein
YP_002979504.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ret:RHE_PC00058 two-component sensor histidine kinase protein
YP_002979505.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ret:RHE_PC00057 two-component response regulator protein
YP_002979507.1	PFAM: peptidase M24; creatinase; KEGG: map1; methionine aminopeptidase protein
YP_002979508.1	PFAM: alpha/beta hydrolase fold; KEGG: mmw:Mmwyl1_2460 alpha/beta hydrolase fold
YP_002979509.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PC00043 AsnC/GntR family transcriptional regulator protein
YP_002979510.1	PFAM: dihydrodipicolinate synthetase; KEGG: ret:RHE_PC00042 dihydrodipicolinate synthetase protein
YP_002979511.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: smd:Smed_2142 ABC transporter related
YP_002979512.1	PFAM: protein of unknown function DUF1680; KEGG: smd:Smed_2143 protein of unknown function DUF1680
YP_002979513.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2144 binding-protein-dependent transport systems inner membrane component
YP_002979514.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2145 binding-protein-dependent transport systems inner membrane component
YP_002979515.1	PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_2146 extracellular solute-binding protein family 1
YP_002979516.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: smd:Smed_2147 periplasmic binding protein/LacI transcriptional regulator
YP_002979517.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_PC00041 LacI family transcription regulator
YP_002979518.1	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ret:RHE_PC00040 putative alpha-L-rhamnosidase protein
YP_002979519.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00039 sugar ABC transporter, substrate-binding protein
YP_002979520.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00038 sugar ABC transporter, permease protein
YP_002979521.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00037 sugar ABC transporter, substrate-binding protein
YP_002979522.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PC00036 sugar ABC transporter, ATP-binding protein
YP_002979523.1	KEGG: sme:SM_b21509 putative plasmid stability protein
YP_002979525.1	KEGG: pfl:PFL_5484 hypothetical protein
YP_002979526.1	KEGG: ret:RHE_PC00033 hypothetical protein
YP_002979527.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ret:RHE_PC00032 succinate-semialdehyde dehydrogenase protein
YP_002979528.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PC00031 polyamine ABC transporter ATP-binding protein
YP_002979529.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00030 polyamine ABC transporter permease
YP_002979530.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00029 polyamine ABC transporter permease
YP_002979531.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00028 polyamine ABC transporter substrate-binding protein
YP_002979532.1	PFAM: NIPSNAP family containing protein; KEGG: ret:RHE_PC00027 hypothetical protein
YP_002979533.1	PFAM: Aldehyde Dehydrogenase; KEGG: ret:RHE_PC00026 aldehyde dehydrogenase protein
YP_002979534.1	PFAM: Luciferase-like monooxygenase; KEGG: ret:RHE_PC00025 monooxygenase protein
YP_002979535.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: ret:RHE_PC00024 flavoprotein oxidoreductase protein
YP_002979536.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PC00023 hydrolase protein
YP_002979537.1	PFAM: protein of unknown function DUF1185; KEGG: ret:RHE_PC00022 hypothetical protein
YP_002979538.1	PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PC00021 GntR family transcriptional regulator
YP_002979539.1	KEGG: ret:RHE_PC00020 hypothetical protein
YP_002979540.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: ret:RHE_PC00002 hypothetical protein
YP_002979541.1	PFAM: Domain of unknown function DUF1814; KEGG: bja:bll1927 hypothetical protein
YP_002979542.1	KEGG: bja:bll1928 hypothetical protein
YP_002979543.1	TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: traA; Ti-type conjugative transfer relaxase TraA
YP_002979544.1	KEGG: mobilization protein C
YP_002979545.1	PFAM: TRAG family protein; KEGG: traG; Ti-type conjugative transfer system protein TraG ; K03205 type IV secretion system protein VirD4
YP_002979546.1	PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: hypothetical protein
YP_002979547.1	PFAM: domain of unknown function DUF1738; KEGG: rec:RHECIAT_PB0000154 probable DNA conjugal transfer antirestriction protein
YP_002979548.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002979549.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rpa:RPA2243 XRE family transcriptional regulator
YP_002979550.1	PFAM: Ankyrin; SMART: Ankyrin; KEGG: similar to ankyrin 2,3/unc44
YP_002979552.1	PFAM: Peptidase M15A; protein of unknown function DUF882; KEGG: ccs:CCNA_00583 hypothetical protein
YP_002979556.1	PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: hypothetical protein
YP_002979557.1	PFAM: peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat protein; KEGG: mgm:Mmc1_3477 peptidase C14, caspase catalytic subunit P20
YP_002984577.1	PFAM: helix-turn-helix domain protein; cupin; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_PA0000338 putative transcriptional regulator protein
YP_002984578.1	PFAM: glutamine amidotransferase class-II; KEGG: glxB; amidophosphoribosyl transferase protein
YP_002984579.1	PFAM: glutamate synthase alpha subunit domain protein; KEGG: smd:Smed_3292 glutamate synthase alpha subunit domain protein
YP_002984580.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: sme:SMc02612 putative oxidoreductase protein
YP_002984581.1	TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region; KEGG: ret:RHE_PE00418 glutamine sinthetase protein
YP_002984582.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_002984583.1	PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: aminomethyltransferase protein ; K00605 aminomethyltransferase
YP_002984584.1	KEGG: ret:RHE_PE00414 hypothetical protein
YP_002984585.1	PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ret:RHE_PE00413 ferredoxin protein
YP_002984586.1	KEGG: ret:RHE_PE00412 hypothetical protein; SNP /replace=G
YP_002984587.1	PFAM: flavin-containing monooxygenase FMO; KEGG: ret:RHE_PE00411 monooxygenase protein
YP_002984588.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: ret:RHE_PE00410 putative chemotaxis protein
YP_002984589.1	blocks the formation of polar Z-ring septums
YP_002984590.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_PE00408 cell division inhibitor MinD protein
YP_002984591.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_002984592.1	KEGG: hypothetical protein
YP_002984593.1	KEGG: hypothetical protein; SNP /replace=C
YP_002984594.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cold shock protein ; K03704 cold shock protein (beta-ribbon, CspA family)
YP_002984595.1	PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: ret:RHE_PE00406 aminomethyltransferase protein
YP_002984596.1	PFAM: amino acid permease-associated region; KEGG: ret:RHE_PE00405 amino acid transporter, permease protein
YP_002984597.1	PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_PA0000323 probable alcohol dehydrogenase protein
YP_002984598.1	PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: ret:RHE_PE00403 putative amine oxidase protein
YP_002984599.1	PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: hypothetical protein
YP_002984600.1	catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide
YP_002984601.1	KEGG: ret:RHE_CH00448 phospholipid N-methyltransferase protein
YP_002984602.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mlo:mll5373 two-component response regulator
YP_002984603.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:blr4803 two-component hybrid sensor and regulator
YP_002984604.1	3'-5' exonuclease of DNA polymerase III
YP_002984605.1	PFAM: protein of unknown function DUF1127; KEGG: ret:RHE_PE00401 hypothetical protein; SNP /replace=C; SNP /replace=G; SNP /replace=C
YP_002984606.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_002984607.1	TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_PA0000318 putative 2-deoxy-D-gluconate 3-dehydrogenase protein
YP_002984608.1	PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: ret:RHE_PE00398 GntR family transcriptional regulator; SNP /replace=G
YP_002984609.1	KEGG: ret:RHE_PE00396 hypothetical protein
YP_002984610.1	KEGG: sbn:Sbal195_2140 hypothetical protein
YP_002984611.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: gdi:GDI2107 putative exodeoxyribonuclease; SNP /replace=A
YP_002984613.1	PFAM: PRC-barrel domain protein; KEGG: hypothetical protein
YP_002984614.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000315 putative multidrug resistance transporter protein; SNP /replace=G
YP_002984615.1	PFAM: flagellin domain protein; KEGG: ret:RHE_PE00392 flagellin C protein
YP_002984616.1	PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: rec:RHECIAT_PA0000313 probable beta-N-acetylhexosaminidase protein
YP_002984617.1	PFAM: helix-turn-helix HxlR type; KEGG: transcriptional regulator
YP_002984618.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: oxidoreductase protein
YP_002984619.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: zinc-binding oxidoreductase protein
YP_002984620.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PA0000312 putative transcriptional regulator protein, AraC family; SNP /replace=A
YP_002984621.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_PA0000311 hypothetical conserved membrane protein
YP_002984622.1	PFAM: ROK family protein; KEGG: rec:RHECIAT_PA0000310 probable transcriptional regulator protein, ROK/CRP family
YP_002984623.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000309 probable transporter, permease protein
YP_002984624.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PE00386 short chain dehydrogenase
YP_002984625.1	PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: rec:RHECIAT_PA0000307 putative transcriptional regulator protein
YP_002984626.1	PFAM: Endoribonuclease L-PSP; KEGG: ret:RHE_PE00384 YigF family translation initiation factor
YP_002984627.1	KEGG: rec:RHECIAT_PA0000305 hypothetical protein
YP_002984628.1	PFAM: Microcystin LR degradation protein MlrC-like; MlrC domain protein; KEGG: ret:RHE_PE00382 hypothetical protein
YP_002984629.1	PFAM: alanine racemase; KEGG: rec:RHECIAT_PA0000303 putative amino acid processing protein
YP_002984630.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0002791 adenylate cyclase protein
YP_002984631.1	PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000297 probable sugar uptake ABC transporter, ATP-binding protein
YP_002984632.1	PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00370 sugar uptake ABC transporter, substrate-binding protein
YP_002984633.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00369 sugar uptake ABC transporter, permease protein; SNP /replace=G; SNP /replace=C
YP_002984634.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000294 probable sugar uptake ABC transporter, permease protein
YP_002984635.1	PFAM: oxidoreductase; Oxidoreductase domain; KEGG: ret:RHE_PE00367 oxidoreductase protein
YP_002984636.1	PFAM: dienelactone hydrolase; KEGG: rec:RHECIAT_PA0000292 probable dienelactone hydrolase protein
YP_002984637.1	PFAM: MmgE/PrpD family protein; KEGG: oan:Oant_3094 MmgE/PrpD family protein
YP_002984638.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_5821 LysR family transcriptional regulator
YP_002984639.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: atc:AGR_L_2884 hypothetical protein
YP_002984640.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_2886 probable peptide ABC transporter permease protein Y4TP
YP_002984641.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02028 peptide ABC transporter permease
YP_002984642.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: atc:AGR_L_2889 probable ATP-binding component of ABC transporter
YP_002984643.1	KEGG: sme:SMc02026 putative beta-lactamase precursor protein
YP_002984644.1	PFAM: extracellular solute-binding protein family 5; KEGG: smd:Smed_2436 extracellular solute-binding protein family 5
YP_002984645.1	TIGRFAM: amidohydrolase; KEGG: sme:SMc02024 hypothetical protein
YP_002984646.1	PFAM: Extracellular ligand-binding receptor; KEGG: mrd:Mrad2831_4419 putative amidase expression-regulating protein
YP_002984647.1	PFAM: ANTAR domain protein; KEGG: mrd:Mrad2831_4420 response regulator receiver/ANTAR domain-containing protein
YP_002984648.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mrd:Mrad2831_4421 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_002984649.1	PFAM: Extracellular ligand-binding receptor; KEGG: mrd:Mrad2831_4422 extracellular ligand-binding receptor
YP_002984650.1	PFAM: inner-membrane translocator; KEGG: mrd:Mrad2831_4423 inner-membrane translocator
YP_002984651.1	PFAM: ABC transporter; inner-membrane translocator; SMART: AAA ATPase; KEGG: mrd:Mrad2831_4424 ABC transporter
YP_002984652.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mrd:Mrad2831_4425 ABC transporter
YP_002984653.1	PFAM: Amidase; KEGG: reh:H16_A1469 amidase
YP_002984654.1	PFAM: protein of unknown function DUF606; KEGG: ret:RHE_PE00365 hypothetical protein
YP_002984655.1	PFAM: protein of unknown function DUF606; KEGG: ret:RHE_PE00364 hypothetical protein
YP_002984656.1	PFAM: uracil-DNA glycosylase; KEGG: G:T/U mismatch-specific DNA glycosylase
YP_002984657.1	PFAM: MOSC domain containing protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: mno:Mnod_6438 MOSC domain containing protein
YP_002984658.1	PFAM: pirin; KEGG: sme:SMa1262 hypothetical protein
YP_002984659.1	KEGG: rec:RHECIAT_PA0000289 hypothetical protein
YP_002984660.1	KEGG: ret:RHE_PE00395 hypothetical protein
YP_002984661.1	KEGG: atc:AGR_L_1428 hypothetical protein
YP_002984662.1	TIGRFAM: hypothetical protein; KEGG: mes:Meso_0637 putative hypothetical protein
YP_002984663.1	PFAM: protein of unknown function DUF1206; KEGG: ret:RHE_PF00085 hypothetical protein
YP_002984664.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pag:PLES_10311 putative acetyltransferase, GNAT family
YP_002984665.1	TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; cupin; KEGG: rec:RHECIAT_PA0000276 hypothetical protein
YP_002984666.1	PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000275 putative peptide ABC transporter, ATP-binding protein
YP_002984667.1	PFAM: L-seryl-tRNA selenium transferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rec:RHECIAT_PA0000274 L-seryl-tRNA(sec) selenium transferase protein
YP_002984668.1	PFAM: Endoribonuclease L-PSP; KEGG: rec:RHECIAT_PA0000273 putative translation initiation inhibitor protein, YjgF family
YP_002984669.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000272 probable peptide ABC transporter, permease protein
YP_002984670.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00341 peptide ABC transporter, permease protein
YP_002984671.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000270 probable peptide ABC transporter, substrate-binding protein
YP_002984672.1	PFAM: protein of unknown function DUF1349; KEGG: rec:RHECIAT_PA0000269 hypothetical protein
YP_002984673.1	KEGG: ABC transporter substrate-binding protein ; K01999   branched-chain amino acid transport system substrate-binding protein
YP_002984674.1	PFAM: ANTAR domain protein; KEGG: response regulator antiterminator domain-containing protein
YP_002984675.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3258 ABC peptide transporter, inner membrane subunit
YP_002984676.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component ; K02033 peptide/nickel transport system permease protein
YP_002984677.1	PFAM: extracellular solute-binding protein family 5; KEGG: csa:Csal_0212 extracellular solute-binding protein, family 5
YP_002984678.1	PFAM: Acetamidase/Formamidase; KEGG: formamidase
YP_002984679.1	PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: smd:Smed_1749 ABC transporter
YP_002984680.1	KEGG: ret:RHE_PE00337 hydoxyethylthiazole kinase protein; TIGRFAM: hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase
YP_002984681.1	KEGG: ret:RHE_PE00336 thiamine-phosphate pyrophosphorylase protein; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_002984682.1	TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: rec:RHECIAT_PA0000265 phosphomethylpyrimidine kinase protein
YP_002984683.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_PA0000264 hypothetical protein
YP_002984684.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: rec:RHECIAT_PA0000263 putative beta-N-acetylhexosaminidase protein
YP_002984685.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000262 putative ABC transporter, substrate-binding protein
YP_002984686.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00331 putative peptide ABC transporter, permease protein
YP_002984687.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000260 putative ABC transporter, permease protein
YP_002984688.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00329 putative peptide ABC transporter, ATP-binding protein
YP_002984689.1	PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000258 putative ABC transporter, ATP-binding protein
YP_002984690.1	KEGG: rec:RHECIAT_PA0000257 hypothetical protein
YP_002984691.1	PFAM: HpcH/HpaI aldolase; KEGG: rec:RHECIAT_PA0000256 probable hydroxyacid aldolase protein
YP_002984692.1	KEGG: rec:RHECIAT_PA0000255 hypothetical protein
YP_002984693.1	TIGRFAM: choline sulfate-utilization transcription factor; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PE00325 LysR family transcriptional regulator
YP_002984694.1	TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: ret:RHE_PE00324 choline sulfatase protein
YP_002984695.1	PFAM: xylose isomerase; KEGG: ret:RHE_PE00323 hypothetical protein
YP_002984696.1	PFAM: Amidase; KEGG: ret:RHE_PE00322 hypothetical protein
YP_002984697.1	KEGG: ret:RHE_PE00321 hypothetical protein
YP_002984698.1	PFAM: Protein of unknown function DUF1810; KEGG: rec:RHECIAT_PA0000248 hypothetical protein
YP_002984699.1	KEGG: rec:RHECIAT_PA0000247 hypothetical protein
YP_002984700.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_PE00303 TetR family transcriptional regulator
YP_002984701.1	KEGG: rec:RHECIAT_PA0000245 hypothetical protein
YP_002984702.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PE00299 oxidoreductase
YP_002984703.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ret:RHE_PE00298 IclR family transcriptional regulator
YP_002984704.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_002984705.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_PA0000240 probable RNA polymerase sigma factor protein
YP_002984706.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: ret:RHE_PE00293 hypothetical protein
YP_002984707.1	TIGRFAM: L-rhamnose catabolism isomerase; PFAM: xylose isomerase; KEGG: rec:RHECIAT_PA0000238 putative sugar isomerase protein
YP_002984708.1	PFAM: protein of unknown function UPF0057; KEGG: atu:Atu0413 stress induced protein
YP_002984709.1	TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_PA0000237 putative oxidoreductase protein, short-chain dehydrogenases/reductases (SDR) family
YP_002984710.1	PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: rec:RHECIAT_PA0000236 probable transcriptional regulator protein, DeoR family
YP_002984711.1	TIGRFAM: rhamnose ABC transporter periplasmic rhamnose-binding protein; KEGG: ret:RHE_PE00289 sugar ABC transporter, substrate-binding protein
YP_002984712.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000234 probable sugar ABC transporter, ATP-binding protein; SNP /replace=G
YP_002984713.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PE00287 sugar ABC transporter, permease protein
YP_002984714.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PA0000232 putative sugar ABC transporter, permease protein
YP_002984715.1	TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: ret:RHE_PE00285 hypothetical protein
YP_002984716.1	PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_PA0000230 putative sugar kinase protein; SNP /replace=G; SNP /replace=C
YP_002984717.1	KEGG: ret:RHE_PE00283 hypothetical protein
YP_002984718.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: smd:Smed_2139 helix-turn-helix-domain containing protein AraC type
YP_002984719.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: sme:SMc01611 putative ferrichrome-iron receptor precursor protein
YP_002984720.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00282 ferrichrome-iron transporter, ATP-binding protein
YP_002984721.1	PFAM: periplasmic binding protein; KEGG: azc:AZC_1624 ABC Fe+3 hydroxamate (ferrichrome) transporter
YP_002984722.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_002984723.1	PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: hypothetical protein ; K07229
YP_002984724.1	TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: ret:RHE_PE00281 putative 3-hydroxyisobutyrate dehydrogenase protein
YP_002984725.1	PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: ret:RHE_PE00280 alcohol dehydrogenase
YP_002984726.1	PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PA0000225 probable branched-chain amino acid ABC transporter, permease protein
YP_002984727.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_PE00278 branched chain amino acid ABC transporter permease
YP_002984728.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00277 branched chain amino acid ABC transporter ATP-binding protein
YP_002984729.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000222 putative branched-chain amino acid ABC transporter, ATP-binding protein
YP_002984730.1	PFAM: Extracellular ligand-binding receptor; KEGG: rec:RHECIAT_PA0000221 probable branched-chain amino acid ABC transporter, substrate-binding protein
YP_002984732.1	PFAM: glycoside hydrolase family 5; KEGG: mno:Mnod_6857 glycoside hydrolase family 5
YP_002984733.1	PFAM: polysaccharide biosynthesis protein; KEGG: mno:Mnod_6867 polysaccharide biosynthesis protein
YP_002984734.1	PFAM: glycosyl transferase family 2; KEGG: mno:Mnod_6856 glycosyl transferase family 2; SNP /replace=G
YP_002984735.1	PFAM: Protein of unknown function DUF1616; KEGG: mno:Mnod_6869 protein of unknown function DUF1616
YP_002984736.1	KEGG: oan:Oant_4241 hypothetical protein
YP_002984737.1	KEGG: mno:Mnod_6870 putative transmembrane protein; SNP /replace=G
YP_002984738.1	PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_6871 glycosyl transferase group 1
YP_002984739.1	PFAM: glycosyl transferase family 2; KEGG: mno:Mnod_6872 glycosyl transferase family 2
YP_002984740.1	PFAM: polysaccharide export protein; KEGG: mno:Mnod_6863 polysaccharide export protein; SNP /replace=G
YP_002984741.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ret:RHE_PE00273 LysR family transcriptional regulator
YP_002984742.1	PFAM: cupin; KEGG: rec:RHECIAT_PA0000218 putative pectin degradation protein
YP_002984743.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rec:RHECIAT_PA0000217 glutaryl-CoA dehydrogenase protein
YP_002984744.1	KEGG: ret:RHE_PE00271 hypothetical protein
YP_002984745.1	Enables the enzymatic reduction of mercuric ions to elemental mercury
YP_002984746.1	PFAM: hypothetical protein; KEGG: rec:RHECIAT_PA0000214 hypothetical conserved membrane protein
YP_002984747.1	PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: rec:RHECIAT_PA0000213 probable xylitol dehydrogenase protein
YP_002984748.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_002984750.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_002984751.1	KEGG: rec:RHECIAT_PA0000209 potassium-transporting ATPase protein, C chain; TIGRFAM: potassium-transporting ATPase subunit C; PFAM: K transporting ATPase KdpC subunit
YP_002984752.1	PFAM: Osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_PA0000208 two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel)
YP_002984753.1	PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ret:RHE_PE00262 two-component response regulator
YP_002984754.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rec:RHECIAT_PA0000206 putative PTS system, regulator protein
YP_002984755.1	PFAM: porin; KEGG: rec:RHECIAT_PA0000205 porin outer membrane protein
YP_002984756.1	TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00259 sulfate uptake ABC transporter, substrate-binding protein
YP_002984757.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000203 putative sulfate uptake ABC transporter, permease protein
YP_002984758.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00257 sulfate uptake ABC transporter, permease protein
YP_002984759.1	KEGG: rec:RHECIAT_PA0000201 probable sulfate uptake ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter; SMART: AAA ATPase
YP_002984760.1	PFAM: cell wall hydrolase SleB; KEGG: ret:RHE_PE00255 putative cell wall-associated hydrolase protein
YP_002984761.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_002984762.1	PFAM: metallophosphoesterase; KEGG: esa:ESA_pESA3p05456 hypothetical protein
YP_002984763.1	PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00248 sugar ABC transporter, ATP-binding protein
YP_002984764.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00247 sugar ABC transporter, permease protein
YP_002984765.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000191 probable sugar ABC transporter, permease protein
YP_002984766.1	PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PA0000190 putative sugar ABC transporter, substrate-binding protein
YP_002984767.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ret:RHE_PE00244 hypothetical protein
YP_002984768.1	PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rec:RHECIAT_PA0000188 probable transcriptional regulator protein, GntR family
YP_002984770.1	PFAM: carboxylesterase type B; KEGG: asu:Asuc_2093 carboxylesterase type B
YP_002984771.1	PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: rpb:RPB_0526 short chain dehydrogenase; SNP /replace=T; SNP /replace=A; SNP /replace=G; SNP /replace=C; SNP /replace=C
YP_002984772.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mll2472 transcriptional regulator
YP_002984773.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mlr0919 transcriptional regulator
YP_002984774.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_PA0000174 putative endonuclease/exonuclease/phosphatase protein
YP_002984775.1	PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: rec:RHECIAT_PA0000173 transmembrane cardiolipin synthetase protein
YP_002984776.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase; KEGG: ret:RHE_PE00232 DNA-directed DNA polymerase protein
YP_002984777.1	KEGG: rec:RHECIAT_PA0000171 hypothetical protein
YP_002984778.1	KEGG: rec:RHECIAT_PA0000169 hypothetical protein
YP_002984779.1	PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; KEGG: rec:RHECIAT_PA0000168 putative two-component sensor histidine kinase/response regulator hybrid protein
YP_002984780.1	KEGG: rec:RHECIAT_PA0000167 hypothetical protein
YP_002984781.1	KEGG: rec:RHECIAT_PA0000166 hypothetical protein
YP_002984782.1	KEGG: rec:RHECIAT_PA0000165 hypothetical protein
YP_002984783.1	PFAM: Glutathione S-transferase domain; KEGG: ret:RHE_PE00210 glutathione S-transferase protein
YP_002984784.1	TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: rec:RHECIAT_PA0000163 putative DNA ligase protein
YP_002984785.1	KEGG: rec:RHECIAT_PA0000162 probable DNA topoisomerase I protein
YP_002984786.1	KEGG: rec:RHECIAT_PA0000161 glycosyl hydrolase (glycogen debranching) protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_002984787.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_PA0000160 probable dehydrogenase/reductase protein
YP_002984788.1	KEGG: rsp:RSP_4068 hypothetical protein
YP_002984789.1	KEGG: mlo:mlr3301 hypothetical protein
YP_002984790.1	PFAM: peptidase C14 caspase catalytic subunit p20; Peptidoglycan-binding domain 1 protein; KEGG: scl:sce0912 hypothetical protein
YP_002984791.1	PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_PE00206 hypothetical protein
YP_002984792.1	PFAM: sulfatase; KEGG: pla:Plav_3137 sulfatase; SNP /replace=G; SNP /replace=C; SNP /replace=C; SNP /replace=T; SNP /replace=T; SNP /replace=G; SNP /replace=T; SNP /replace=G; SNP /replace=T; SNP /replace=G; SNP /replace=C
YP_002984793.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1246 hypothetical protein
YP_002984794.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mrd:Mrad2831_2891 binding-protein-dependent transport systems inner membrane component
YP_002984795.1	PFAM: extracellular solute-binding protein family 1; KEGG: bcz:BCZK1634 sugar ABC transporter, sugar-binding protein
YP_002984796.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmj:BMULJ_03283 LysR family transcriptional regulator
YP_002984797.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PE00205 putative acetyltransferase protein; SNP /replace=G
YP_002984798.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_002984799.1	KEGG: rec:RHECIAT_PA0000155 3-oxoadipate CoA-transferase protein, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_002984800.1	KEGG: rec:RHECIAT_PA0000154 3-oxoadipate CoA-transferase protein, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_002984801.1	KEGG: ret:RHE_PE00200 IclR family transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR
YP_002984802.1	PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_PA0000152 probable transcriptional regulator protein, ArsR family
YP_002984803.1	PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: ret:RHE_PE00195 alpha-L-arabinofuranosidase protein; SNP /replace=A; SNP /replace=C
YP_002984804.1	PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PE00194 oligopeptide ABC transporter, ATP-binding protein
YP_002984805.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000149 putative ABC transporter, permease protein
YP_002984806.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000148 probable oligopeptide ABC transporter, permease protein; SNP /replace=C
YP_002984807.1	KEGG: rec:RHECIAT_PA0000147 probable oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SNP /replace=T
YP_002984808.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000146 probable ABC transporter, ATP-binding protein
YP_002984809.1	KEGG: ret:RHE_CH02148 putative sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CHASE domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_002984810.1	TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: traA; Ti-type conjugative transfer relaxase TraA
YP_002984811.1	KEGG: mobilization protein C
YP_002984812.1	KEGG: traG; Ti-type conjugative transfer system protein   TraG ; K03205 type IV secretion system protein VirD4
YP_002984813.1	TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: smd:Smed_5805 HipA domain protein
YP_002984814.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pde:Pden_1547 XRE family transcriptional regulator
YP_002984815.1	PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: hypothetical protein
YP_002984816.1	PFAM: domain of unknown function DUF1738; KEGG: rec:RHECIAT_PB0000154 probable DNA conjugal transfer antirestriction protein
YP_002984817.1	KEGG: rec:RHECIAT_PA0000115 putative sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein
YP_002984818.1	KEGG: ret:RHE_PC00121 hypothetical protein
YP_002984819.1	KEGG: hypothetical protein
YP_002984820.1	PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: rde:RD1_A0063 succinoglycan biosynthesis protein ExoI
YP_002984821.1	PFAM: OmpA/MotB domain protein; KEGG: hypothetical protein
YP_002984822.1	KEGG: hypothetical protein
YP_002984823.1	KEGG: hypothetical protein
YP_002984824.1	KEGG: hypothetical protein
YP_002984825.1	PFAM: ThiJ/PfpI domain protein; KEGG: sus:Acid_1477 ThiJ/PfpI domain-containing protein
YP_002984826.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: mno:Mnod_8518 4-oxalocrotonate tautomerase
YP_002984827.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: smd:Smed_3914 4-oxalocrotonate tautomerase
YP_002984828.1	KEGG: bpy:Bphyt_1688 conserved hypothetical protein, thioredoxin-like fold
YP_002984829.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SM_b20210 putative oxidoreductase protein
YP_002984830.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr6270 hypothetical protein
YP_002984831.1	KEGG: atc:AGR_L_213 hypothetical protein; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase
YP_002984834.1	PFAM: transcriptional regulator domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00532 LuxR family transcriptional regulator
YP_002984835.1	PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: ret:RHE_PF00533 two-component response regulator protein
YP_002984836.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PF00536 epoxide hydrolase protein
YP_002984837.1	PFAM: Luciferase-like monooxygenase; KEGG: rec:RHECIAT_CH0000674 probable luciferase protein; SNP /replace=A
YP_002984838.1	KEGG: ret:RHE_PF00537 hypothetical protein
YP_002984839.1	PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: smd:Smed_5539 protein of unknown function DUF1228
YP_002984840.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: ret:RHE_PF00539 dioxygenase protein
YP_002984841.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5537 short-chain dehydrogenase/reductase SDR
YP_002984842.1	PFAM: Endoribonuclease L-PSP; KEGG: smd:Smed_5536 endoribonuclease L-PSP
YP_002984843.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ret:RHE_PF00542 enoyl-CoA hydratase protein
YP_002984844.1	KEGG: ret:RHE_PF00543 hypothetical protein
YP_002984845.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PF00544 isochorismatase protein
YP_002984846.1	PFAM: Aldehyde Dehydrogenase; KEGG: smd:Smed_5547 aldehyde dehydrogenase
YP_002984847.1	PFAM: NADPH-dependent FMN reductase; KEGG: smd:Smed_5533 NADPH-dependent FMN reductase
YP_002984848.1	catalyzes the formation of pyruvate from D-cysteine
YP_002984849.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_5531 short-chain dehydrogenase/reductase SDR
YP_002984850.1	PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: smd:Smed_5530 epoxide hydrolase domain protein
YP_002984851.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_PF00545 hypothetical protein; SNP /replace=G
YP_002984852.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smd:Smed_5526 LysR family transcriptional regulator
YP_002984853.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: smd:Smed_5540 response regulator receiver protein
YP_002984854.1	KEGG: smd:Smed_5522 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SNP /replace=C; SNP /replace=G; SNP /replace=C; SNP /replace=T
YP_002984855.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: smd:Smed_5521 response regulator receiver protein
YP_002984856.1	KEGG: smd:Smed_5522 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_002984857.1	PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: smd:Smed_5519 epoxide hydrolase domain protein
YP_002984858.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; BA14K family protein; KEGG: rec:RHECIAT_CH0001201 penicillin binding protein B
YP_002984859.1	PFAM: protein of unknown function UPF0118; KEGG: smd:Smed_5154 protein of unknown function UPF0118
YP_002984860.1	PFAM: protein of unknown function DUF421; KEGG: mes:Meso_3510 conserved hypothetical membrane-anchored protein
YP_002984861.1	KEGG: smd:Smed_3722 hypothetical protein
YP_002984862.1	KEGG: rsq:Rsph17025_4126 hypothetical protein
YP_002984863.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_PF00052 RNA polymerase sigma-E factor
YP_002984864.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SM_b20076 short chain dehydrogenase
YP_002984865.1	KEGG: mex:Mext_4153 hypothetical protein
YP_002984866.1	PFAM: K potassium transporter; KEGG: mlo:mll1417 potassium uptake protein Kup
YP_002984867.1	KEGG: atc:AGR_L_3014 hypothetical protein
YP_002984868.1	KEGG: rec:RHECIAT_CH0000185 hypothetical protein
YP_002984869.1	PFAM: glycoside hydrolase family 4; KEGG: rec:RHECIAT_PA0000101 alpha-galactosidase protein
YP_002984870.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00093 peptide ABC transporter, ATP-binding protein
YP_002984871.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000099 probable peptide ABC transporter, permease protein
YP_002984872.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000098 probable peptide ABC transporter, permease protein
YP_002984873.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000097 alpha-galactoside ABC transporter, substrate-binding protein
YP_002984874.1	PFAM: glycoside hydrolase family 4; KEGG: rec:RHECIAT_PA0000096 alpha-galactosidase protein
YP_002984875.1	PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PA0000095 probable transcriptional regulator protein, AraC family
YP_002984876.1	PFAM: Methyltransferase type 12; Methyltransferase type 11; O-methyltransferase family 2; KEGG: methyltransferase protein
YP_002984877.1	KEGG: ret:RHE_PE00087 hypothetical protein
YP_002984878.1	KEGG: rec:RHECIAT_PA0000093 hypothetical protein
YP_002984879.1	KEGG: rec:RHECIAT_PA0000092 hypothetical protein
YP_002984880.1	PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); KEGG: ret:RHE_PE00084 putative sarcosine dehydrogenase protein
YP_002984881.1	KEGG: atc:AGR_C_1484 hypothetical protein
YP_002984882.1	KEGG: ret:RHE_CH02020 hypothetical protein
YP_002984883.1	PFAM: MscS Mechanosensitive ion channel; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: mechanosensitive ion channel protein
YP_002984884.1	KEGG: rru:Rru_A1975 XRE family transcriptional regulator
YP_002984885.1	KEGG: mlo:msl4971 hypothetical protein
YP_002984886.1	KEGG: mntH; manganese transporter protein
YP_002984887.1	PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ret:RHE_PE00083 hypothetical protein
YP_002984889.1	KEGG: rec:RHECIAT_PC0000054 hypothetical protein
YP_002984890.1	KEGG: rec:RHECIAT_PC0000053 hypothetical protein
YP_002984891.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002984892.1	KEGG: rec:RHECIAT_CH0002698 hypothetical protein
YP_002984893.1	PFAM: protein of unknown function DUF323; KEGG: mlo:mll5466 hypothetical protein
YP_002984894.1	KEGG: sme:SMa0945 hypothetical protein
YP_002984895.1	PFAM: sulfatase; KEGG: sme:SMa0943 arylsulfatase
YP_002984896.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: smd:Smed_5632 response regulator receiver protein
YP_002984897.1	PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sme:SMa1686 two-component response regulator
YP_002984898.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sme:SMa1684 sensory histidine kinase
YP_002984899.1	PFAM: sulfatase; KEGG: smd:Smed_5768 sulfatase
YP_002984900.1	PFAM: haloacid dehalogenase; KEGG: smd:Smed_1238 NapD-like protein
YP_002984901.1	KEGG: smd:Smed_5770 tetratricopeptide TPR_2 repeat protein; TIGRFAM: cytochrome C family protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein
YP_002984902.1	KEGG: rec:RHECIAT_CH0002048 hypothetical protein
YP_002984903.1	KEGG: smd:Smed_5626 hypothetical protein
YP_002984904.1	PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: bja:blr2659 hypothetical protein
YP_002984905.1	KEGG: ret:RHE_PE00082 hypothetical protein
YP_002984906.1	PFAM: phenylalanine/histidine ammonia-lyase; KEGG: rec:RHECIAT_PA0000088 histidine ammonia-lyase protein
YP_002984907.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00080 octopine ABC transporter, ATP-binding protein
YP_002984908.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00079 octopine ABC transporter, permease protein
YP_002984909.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000085 octopine ABC transporter, permease protein
YP_002984910.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PA0000084 probable octopine ABC transporter, substrate-binding protein
YP_002984911.1	KEGG: ret:RHE_PE00076 histidine utilization transcriptional regulator (repressor) protein; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH
YP_002984912.1	KEGG: atc:AGR_pAT_694 hypothetical protein
YP_002984913.1	KEGG: rec:RHECIAT_CH0003417 hypothetical protein
YP_002984915.1	KEGG: rec:RHECIAT_PA0000081 putative transcriptional regulator protein, GntR family; TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH
YP_002984916.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_002984917.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_002984918.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_002984919.1	TIGRFAM: N-formylglutamate amidohydrolase; PFAM: N-formylglutamate amidohydrolase; KEGG: ret:RHE_PE00071 formiminoglutamase protein
YP_002984920.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_002984921.1	PFAM: protein of unknown function DUF886; KEGG: rec:RHECIAT_PA0000075 hypothetical protein
YP_002984922.1	PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_PA0000074 putative molecular chaperone, DnaJ family
YP_002984923.1	PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: ret:RHE_PE00067 hypothetical protein
YP_002984925.1	PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001818 hypothetical protein
YP_002984926.1	PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001817 hypothetical protein; SNP /replace=G; SNP /replace=C
YP_002984927.1	KEGG: atc:AGR_pAT_788 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SNP /replace=C
YP_002984928.1	KEGG: sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002984929.1	LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment
YP_002984930.1	KEGG: hypothetical protein ; K08482 circadian clock protein   KaiC
YP_002984931.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: two-component response regulator protein; SNP /replace=C
YP_002984932.1	KEGG: rec:RHECIAT_CH0002095 hypothetical protein
YP_002984933.1	KEGG: ret:RHE_PF00494 hypothetical protein
YP_002984934.1	KEGG: ret:RHE_PF00493 hypothetical protein
YP_002984935.1	PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_CH0000995 hypothetical protein
YP_002984936.1	KEGG: GF17570 gene product from transcript GF17570-RA
YP_002984937.1	KEGG: rec:RHECIAT_PC0000299 hypothetical protein
YP_002984938.1	KEGG: mlo:msr1747 hypothetical protein
YP_002984939.1	KEGG: rec:RHECIAT_CH0003322 hypothetical protein
YP_002984940.1	KEGG: smd:Smed_5629 hypothetical protein
YP_002984941.1	KEGG: azc:AZC_3686 hypothetical protein
YP_002984942.1	PFAM: OmpA/MotB domain protein; KEGG: hypothetical protein
YP_002984943.1	KEGG: cysteine rich repeat protein
YP_002984945.1	KEGG: atc:AGR_C_1859 hypothetical protein
YP_002984946.1	KEGG: smd:Smed_4883 hypothetical protein
YP_002984947.1	KEGG: rde:RD1_A0006 hypothetical protein
YP_002984948.1	PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: sme:SMa0599 hypothetical protein
YP_002984949.1	KEGG: smd:Smed_4881 hypothetical protein
YP_002984950.1	KEGG: smd:Smed_5626 hypothetical protein
YP_002984951.1	PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: smd:Smed_4882 protein of unknown function DUF1214
YP_002984952.1	PFAM: protein of unknown function DUF81; KEGG: rec:RHECIAT_PC0000140 hypothetical conserved membrane protein
YP_002984953.1	KEGG: hypothetical protein
YP_002984954.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002984955.1	KEGG: Ku protein ; K10979 DNA end-binding protein Ku; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein
YP_002984956.1	KEGG: Ku protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein
YP_002984957.1	PFAM: protein of unknown function DUF159; KEGG: msl:Msil_3101 protein of unknown function DUF159
YP_002984961.1	KEGG: rec:RHECIAT_CH0002698 hypothetical protein
YP_002984962.1	PFAM: protein of unknown function DUF497; KEGG: btr:Btr_0515 hypothetical protein
YP_002984963.1	KEGG: oan:Oant_0615 hypothetical protein
YP_002984964.1	PFAM: protein of unknown function DUF983; KEGG: mes:Meso_2074 protein of unknown function DUF983
YP_002984965.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: azc:AZC_3800 putative cobalamin synthesis protein
YP_002984966.1	KEGG: azc:AZC_3799 hypothetical protein
YP_002984967.1	PFAM: nitrile hydratase beta subunit; KEGG: azc:AZC_3798 putative nitrile hydratase beta subunit
YP_002984968.1	KEGG: azc:AZC_3797 nitrile hydratase alpha subunit; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain
YP_002984969.1	KEGG: azc:AZC_3796 putative transmembrane nitrile hydratase
YP_002984970.1	TIGRFAM: cobalt transporter, subunit CbtB; KEGG: atc:AGR_C_1611 hypothetical protein
YP_002984971.1	TIGRFAM: cobalt transporter, subunit CbtA; KEGG: atc:AGR_C_1613 hypothetical protein
YP_002984972.1	KEGG: atc:AGR_C_1615 hypothetical protein
YP_002984973.1	PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: azc:AZC_3794 AraC-like protein
YP_002984974.1	TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: rec:RHECIAT_CH0001158 probable ATP-dependent DNA ligase protein
YP_002984975.1	KEGG: rec:RHECIAT_CH0002676 hypothetical protein
YP_002984976.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002984977.1	KEGG: ret:RHE_CH02629 hypothetical protein
YP_002984978.1	KEGG: ret:RHE_CH02630 hypothetical protein
YP_002984979.1	KEGG: rec:RHECIAT_CH0001156 hypothetical protein
YP_002984980.1	KEGG: ret:RHE_PF00494 hypothetical protein
YP_002984981.1	KEGG: bra:BRADO0858 hypothetical protein; SNP /replace=T
YP_002984982.1	PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: bbt:BBta_3692 PAS/PAC sensor hybrid histidine kinase; SNP /replace=C; SNP /replace=C; SNP /replace=T
YP_002984983.1	KEGG: ret:RHE_CH02913 hypothetical protein
YP_002984984.1	PFAM: transposase IS4 family protein; KEGG: cak:Caul_4244 transposase IS4 family protein
YP_002984986.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03200 glycosyltransferase; SNP /replace=G
YP_002984987.1	PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: atu:Atu4671 response regulator
YP_002984988.1	PFAM: HipA domain protein; KEGG: smd:Smed_4463 HipA domain protein
YP_002984989.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: smd:Smed_4462 XRE family transcriptional regulator
YP_002984990.1	KEGG: ret:RHE_CH01054 hypothetical protein
YP_002984991.1	KEGG: ret:RHE_CH01053 hypothetical protein
YP_002984992.1	TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: rec:RHECIAT_CH0001158 probable ATP-dependent DNA ligase protein
YP_002984993.1	PFAM: fatty acid hydroxylase; KEGG: ret:RHE_PF00492 hypothetical protein
YP_002984994.1	SNP /replace=A
YP_002984995.1	KEGG: hypothetical protein
YP_002984996.1	KEGG: rec:RHECIAT_PC0000054 hypothetical protein
YP_002984997.1	KEGG: mch:Mchl_3377 hypothetical protein
YP_002985000.1	KEGG: rec:RHECIAT_CH0002676 hypothetical protein
YP_002985002.1	KEGG: ret:RHE_CH01091 hypothetical protein
YP_002985004.1	KEGG: bra:BRADO0858 hypothetical protein
YP_002985005.1	KEGG: atc:AGR_pAT_75 hypothetical protein
YP_002985006.1	PFAM: phospholipase/carboxylesterase; KEGG: phospholipase/carboxylesterase ; K06999
YP_002985008.1	KEGG: rec:RHECIAT_PB0000199 hypothetical protein
YP_002985010.1	KEGG: mno:Mnod_0083 hypothetical protein
YP_002985011.1	PFAM: protein of unknown function DUF1452; KEGG: ret:RHE_CH01796 hypothetical protein
YP_002985012.1	KEGG: ret:RHE_CH02132 hypothetical protein
YP_002985013.1	PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4528 transposase IS3/IS911 family protein
YP_002985014.1	PFAM: UspA domain protein; KEGG: mfa:Mfla_2660 hypothetical protein
YP_002985015.1	KEGG: rec:RHECIAT_CH0003320 hypothetical protein
YP_002985016.1	KEGG: msl:Msil_2190 hypothetical protein
YP_002985018.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002985019.1	KEGG: rec:RHECIAT_CH0003322 hypothetical protein
YP_002985020.1	KEGG: rec:RHECIAT_CH0003323 hypothetical protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein
YP_002985021.1	KEGG: rec:RHECIAT_CH0003324 hypothetical protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein
YP_002985022.1	KEGG: rec:RHECIAT_CH0003325 hypothetical protein
YP_002985023.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002985024.1	KEGG: mno:Mnod_0562 hypothetical protein
YP_002985027.1	KEGG: bbr:BB1712 hypothetical protein
YP_002985028.1	KEGG: ret:RHE_CH01107 hypothetical protein
YP_002985029.1	PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4528 transposase IS3/IS911 family protein
YP_002985030.1	KEGG: mno:Mnod_7561 ATPase AAA; TIGRFAM: ATPase AAA; PFAM: AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_002985032.1	KEGG: rec:RHECIAT_PB0000068 hypothetical protein
YP_002985033.1	KEGG: rec:RHECIAT_CH0003325 hypothetical protein
YP_002985034.1	KEGG: smd:Smed_5689 hypothetical protein
YP_002985035.1	KEGG: smd:Smed_5690 hypothetical protein
YP_002985036.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; sterile alpha motif SAM protein; Sterile alpha motif homology 2; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; sterile alpha motif SAM protein; KEGG: smd:Smed_5691 sterile alpha motif SAM protein; SNP /replace=G; SNP /replace=A; SNP /replace=A; SNP /replace=G; SNP /replace=T; SNP /replace=G; SNP /replace=G; SNP /replace=G; SNP /replace=C
YP_002985037.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_4467 LysR family transcriptional regulator
YP_002985038.1	PFAM: Arc domain protein DNA binding domain protein; KEGG: aav:Aave_1717 Arc domain protein DNA binding domain protein
YP_002985040.1	TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: xoo:XOO0606 XorII very-short-patch-repair endonuclease
YP_002985041.1	TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ngk:NGK_0307 DNA cytosine methyltransferase M.NgoMIII
YP_002985043.1	KEGG: rec:RHECIAT_PA0000068 hypothetical protein
YP_002985044.1	KEGG: ret:RHE_PE00063 putative hydrolase protein
YP_002985045.1	PFAM: RES domain protein; KEGG: rec:RHECIAT_PA0000066 hypothetical protein
YP_002985046.1	KEGG: ret:RHE_PE00061 hypothetical protein
YP_002985047.1	KEGG: rec:RHECIAT_CH0002395 hypothetical protein
YP_002985048.1	TIGRFAM: pca operon transcription factor PcaQ; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rec:RHECIAT_PA0000064 transcriptional regulator protein, LysR family
YP_002985049.1	KEGG: rec:RHECIAT_PA0000063 beta-ketoadipate enol-lactone hydrolase protein; TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Ndr family protein
YP_002985050.1	KEGG: ret:RHE_PE00058 gamma-carboxymuconolactone decarboxylase protein; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase
YP_002985051.1	TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: ret:RHE_PE00057 protocatechuate 3,4-dioxygenase beta chain protein
YP_002985052.1	KEGG: ret:RHE_PE00056 protocatechuate 3,4-dioxygenase alpha chain protein; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase
YP_002985053.1	Catalyzes the cycloisomerization of cis,cis-muconate
YP_002985054.1	KEGG: sme:SMa2151 putative DNA-binding protein
YP_002985055.1	catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate
YP_002985056.1	PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; UBA/THIF-type NAD/FAD binding protein; KEGG: azc:AZC_1453 shikimate dehydrogenase family protein
YP_002985057.1	PFAM: oxidoreductase; Oxidoreductase domain; KEGG: bja:bll6385 putative oxidoreductase
YP_002985058.1	PFAM: ABC transporter; SMART: AAA ATPase; KEGG: azc:AZC_1452 ABC transporter ATP-binding protein
YP_002985059.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1450 ABC transporter permease protein
YP_002985060.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1449 ABC transporter permease protein
YP_002985061.1	PFAM: dehydroquinase class II; KEGG: azc:AZC_1447 dehydroquinase
YP_002985062.1	PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: azc:AZC_1451 ABC transporter substrate-binding protein
YP_002985063.1	PFAM: xylose isomerase; KEGG: hppD; 4-hydroxyphenylpyruvate dioxygenase ; K00457 4-hydroxyphenylpyruvate dioxygenase
YP_002985064.1	PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: smd:Smed_5700 GntR family transcriptional regulator
YP_002985065.1	PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: jan:Jann_4140 GntR family transcriptional regulator
YP_002985066.1	PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0001173 hypothetical protein
YP_002985067.1	KEGG: rec:RHECIAT_CH0001172 hypothetical protein
YP_002985068.1	KEGG: esa:ESA_02044 hypothetical protein
YP_002985069.1	KEGG: rec:RHECIAT_CH0001807 hypothetical protein
YP_002985070.1	KEGG: rec:RHECIAT_PA0000058 putative hydrolase protein, beta-lactamase superfamily
YP_002985071.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_PE00053 hypothetical protein
YP_002985072.1	PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PE00052 putative hydrolase protein
YP_002985073.1	KEGG: rec:RHECIAT_PA0000055 hypothetical protein
YP_002985074.1	PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_PA0000054 putative glycosyltransferase protein
YP_002985075.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; ferredoxin; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_PE00049 adenylate cyclase protein
YP_002985076.1	TIGRFAM: methyltransferase FkbM family; KEGG: rec:RHECIAT_PA0000052 hypothetical protein; SNP /replace=G
YP_002985077.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: cvi:CV_2781 hypothetical protein
YP_002985078.1	PFAM: Chloride channel core; KEGG: chloride channel protein; SNP /replace=C
YP_002985079.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_002985080.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_B2548 FAD dependent oxidoreductase
YP_002985081.1	PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: atc:AGR_C_402 hypothetical protein
YP_002985082.1	PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ret:RHE_CH02028 saccharide ABC transporter, ATP-binding protein
YP_002985083.1	KEGG: rec:RHECIAT_PA0000050 hypothetical protein
YP_002985084.1	KEGG: rec:RHECIAT_PA0000049 hypothetical protein
YP_002985085.1	KEGG: predicted protein
YP_002985086.1	KEGG: mno:Mnod_5305 glyoxalase/bleomycin resistance protein/dioxygenase
YP_002985087.1	PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PC00116 hypothetical protein
YP_002985088.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002985089.1	KEGG: rec:RHECIAT_PC0000306 hypothetical protein
YP_002985090.1	KEGG: rec:RHECIAT_PC0000311 hypothetical protein
YP_002985091.1	KEGG: rec:RHECIAT_PA0000046 probable UDP-glucose 6-dehydrogenase protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase ; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding
YP_002985092.1	KEGG: rec:RHECIAT_PA0000045 adenylate cyclase protein
YP_002985093.1	PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00042 oligopeptide ABC transporter, ATP-binding protein
YP_002985094.1	PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000043 probable oligopeptide ABC transporter, substrate-binding protein
YP_002985095.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00040 oligopeptide ABC transporter, permease protein
YP_002985096.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00039 oligopeptide ABC transporter, permease protein
YP_002985097.1	KEGG: rec:RHECIAT_PA0000040 membrane-anchored protein
YP_002985098.1	PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_PA0000039 glycosyltransferase protein
YP_002985099.1	PFAM: Glycosyltransferase 28 domain; KEGG: rec:RHECIAT_PA0000038 putative glycosyltransferase protein
YP_002985100.1	PFAM: ABC transporter; KEGG: rec:RHECIAT_PA0000037 putative multidrug ABC transporter, ATP-binding and permease protein
YP_002985101.1	PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: rec:RHECIAT_PA0000036 putative transcriptional regulator protein
YP_002985102.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ret:RHE_PE00033 hypothetical protein
YP_002985103.1	KEGG: rec:RHECIAT_PA0000033 hypothetical protein
YP_002985104.1	PFAM: General substrate transporter; KEGG: rec:RHECIAT_PA0000031 putative ABC transporter, permease protein; SNP /replace=A; SNP /replace=T; SNP /replace=G; SNP /replace=C; SNP /replace=A
YP_002985105.1	TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II; KEGG: ret:RHE_PE00030 cytochrome o ubiquinol oxidase, subunit II protein
YP_002985106.1	KEGG: rec:RHECIAT_PA0000029 cytochrome o ubiquinol oxidase protein, subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_002985107.1	TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: ret:RHE_PE00028 cytochrome o ubiquinol oxidase, subunit III protein
YP_002985108.1	TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: rec:RHECIAT_PA0000027 cytochrome o ubiquinol oxidase protein, subunit IV
YP_002985109.1	PFAM: Surfeit locus 1 family protein; KEGG: rec:RHECIAT_PA0000026 probable cytochrome c oxidase complex biogenesis factor protein
YP_002985110.1	KEGG: rec:RHECIAT_PA0000024 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_002985111.1	KEGG: ret:RHE_PE00023 hypothetical protein
YP_002985112.1	KEGG: ret:RHE_PE00021 hypothetical protein
YP_002985113.1	PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000021 putative ABC transporter, ATP-binding protein; SNP /replace=T; SNP /replace=G; SNP /replace=G
YP_002985114.1	PFAM: ABC transporter; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000020 putative multidrug ABC transporter, ATP-binding protein
YP_002985115.1	KEGG: ret:RHE_PE00018 hypothetical protein
YP_002985116.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PA0000017 probable transcriptional regulator protein, LacI family
YP_002985117.1	PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000016 putative tartrate transporter protein
YP_002985118.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000015 putative multidrug transporter protein, Bcr/CflA subfamily
YP_002985119.1	PFAM: regulatory protein TetR; KEGG: ret:RHE_PE00014 TetR family transcriptional regulator
YP_002985120.1	LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment
YP_002985121.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_PA0000012 hypothetical protein
YP_002985122.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_002985123.1	PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; N/apple PAN domain protein; SMART: Apple; KEGG: ret:RHE_PE00010 hypothetical protein
YP_002985124.1	TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; Penicillin-binding domain protein; penicillin-binding protein transpeptidase; KEGG: rec:RHECIAT_PA0000009 probable penicillin-binding protein
YP_002985125.1	KEGG: ret:RHE_PE00008 putative maltooligosyl trehalose synthase protein; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_002985126.1	KEGG: rec:RHECIAT_PA0000007 copper-transporting ATPase protein; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; YHS domain protein; SMART: TRASH domain protein
YP_002985127.1	KEGG: ret:RHE_PE00006 copper eflux transcriptional regulator protein; TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR
YP_002985129.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity
YP_002985130.1	KEGG: rec:RHECIAT_PA0000003 hypothetical protein
YP_002985131.1	PFAM: protein of unknown function UPF0005; KEGG: rec:RHECIAT_PA0000002 hypothetical protein
YP_002985132.1	KEGG: sme:SMa1014 HmrR
YP_002985133.1	KEGG: ret:RHE_CH02511 putative cytochrome c-like protein
YP_002985134.1	KEGG: ret:RHE_CH02512 hypothetical protein
YP_002985135.1	PFAM: protein of unknown function DUF305; KEGG: ret:RHE_CH02513 hypothetical protein
YP_002985137.1	KEGG: ret:RHE_CH02514 hypothetical protein
YP_002985138.1	PFAM: protein of unknown function DUF1612; KEGG: rec:RHECIAT_PA0000001 hypothetical protein
YP_002985139.1	PFAM: replication protein C; KEGG: rec:RHECIAT_PA0000383 plasmid replication protein RepCa
YP_002985140.1	KEGG: rec:RHECIAT_PA0000382 plasmid partitioning protein RepBa; TIGRFAM: plasmid partitioning protein RepB; parB-like partition protein; PFAM: RepB plasmid partition; ParB domain protein nuclease; SMART: ParB domain protein nuclease
YP_002985141.1	TIGRFAM: plasmid partitioning protein RepA; PFAM: Cobyrinic acid ac-diamide synthase; regulatory protein MerR; KEGG: rec:RHECIAT_PA0000381 plasmid partitioning protein RepAa
YP_002985142.1	catalyzes the formation of precorrin 6x from precorrin 5
YP_002985143.1	TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: ret:RHE_PE00455 sulfite reductase, beta subunit (hemoprotein) protein; SNP /replace=A
YP_002985144.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_002985145.1	catalyzes the formation of precorrin-3 from precorrin-2
YP_002985146.1	catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine
YP_002985147.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_002985148.1	KEGG: ret:RHE_PE00450 precorrin-6Y C5,15-methyltransferase (decarboxylating) protein; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_002985149.1	TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rec:RHECIAT_PA0000372 precorrin-4 c(11)-methyltransferase protein
YP_002985150.1	PFAM: xylose isomerase; KEGG: rec:RHECIAT_PA0000371 putative sugar epimerase protein
YP_002985151.1	PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PA0000370 probable transcriptional regulator protein, LacI family
YP_002985152.1	PFAM: fatty acid desaturase; KEGG: rec:RHECIAT_PA0000369 hydrocarbon oxigenase protein
YP_002985153.1	TIGRFAM: Rieske [2Fe-2S] domain protein, MocE subfamily; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_PE00445 ferredoxin of the Rieseke type protein
YP_002985154.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_PA0000367 ferredoxin--NAD(+) reductase protein
YP_002985155.1	PFAM: Ketopantoate hydroxymethyltransferase; KEGG: rec:RHECIAT_PA0000366 probable ketopantoate hydroxymethyltransferase protein
YP_002985156.1	KEGG: rec:RHECIAT_PA0000365 hypothetical protein
YP_002985157.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_002985158.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_002985159.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_002985160.1	PFAM: transcriptional activator domain; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rec:RHECIAT_PA0000361 putative trifolitoxin related protein; SNP /replace=C; SNP /replace=C
YP_002985162.1	PFAM: protein of unknown function DUF181; KEGG: rec:RHECIAT_PA0000360 hypothetical protein
YP_002985163.1	PFAM: TfuA domain protein core; KEGG: ret:RHE_PE00436 hypothetical protein
YP_002985164.1	KEGG: rec:RHECIAT_PA0000358 hypothetical protein
YP_002985165.1	PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_PA0000357 putative transcriptional regulator protein, Cro/CI family
YP_002985166.1	PFAM: amidohydrolase; KEGG: rec:RHECIAT_PA0000354 putative amidohydrolase protein
YP_002985167.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: ret:RHE_PE00432 IclR family transcriptional regulator
YP_002985168.1	PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_PE00431 short chain dehydrogenase/reductase family oxidoreductase
YP_002985169.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rec:RHECIAT_PA0000351 putative racemase protein
YP_002985170.1	PFAM: peptidase C14 caspase catalytic subunit p20; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: ret:RHE_PE00124 hypothetical protein
YP_002985171.1	KEGG: ret:RHE_PE00125 hypothetical protein
YP_002985173.1	KEGG: ret:RHE_PE00126 hypothetical protein
YP_002985175.1	KEGG: ret:RHE_PE00128 hypothetical protein
YP_002985176.1	PFAM: OmpA/MotB domain protein; KEGG: ret:RHE_PE00129 hypothetical protein
YP_002985177.1	PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: ret:RHE_PE00130 hypothetical protein
YP_002985178.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; peptidase C14 caspase catalytic subunit p20; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: ret:RHE_PE00131 serine protease
YP_002985179.1	PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; KEGG: ret:RHE_PE00132 putative serine proteinase inhibitor protein
YP_002985180.1	SMART: serine/threonine protein kinase; KEGG: ret:RHE_PE00133 putative serine(threonine) kinase protein
YP_002985181.1	PFAM: protein of unknown function DUF982; KEGG: ret:RHE_PE00134 hypothetical protein
YP_002985182.1	TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: atc:AGR_C_1484 hypothetical protein
YP_002985183.1	PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ret:RHE_PE00147 hypothetical protein
YP_002985184.1	PFAM: type II secretion system protein; KEGG: ret:RHE_PE00148 putative pilus assembly protein
YP_002985185.1	PFAM: type II secretion system protein; KEGG: ret:RHE_PE00149 hypothetical protein; SNP /replace=T
YP_002985186.1	PFAM: type II secretion system protein E; KEGG: ret:RHE_PE00150 putative type II secretion system protein
YP_002985187.1	TIGRFAM: Flp pilus assembly protein CpaB; KEGG: ret:RHE_PE00151 hypothetical protein
YP_002985189.1	KEGG: ret:RHE_PE00153 hypothetical protein
YP_002985190.1	KEGG: ret:RHE_PE00154 hypothetical protein
YP_002985191.1	KEGG: ret:RHE_PE00155 hypothetical protein
YP_002985192.1	PFAM: peptidase A24A prepilin type IV; KEGG: ret:RHE_PE00156 hypothetical protein
YP_002985195.1	PFAM: type II secretion system protein E; KEGG: ret:RHE_PE00157 putative type II secretion system protein
YP_002985196.1	PFAM: sarcosine oxidase subunit gamma; KEGG: ret:RHE_PE00427 sarcosine oxidase subunit gamma protein
YP_002985197.1	TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rec:RHECIAT_PA0000342 sarcosine oxidase protein, alpha subunit; SNP /replace=A
YP_002985198.1	PFAM: sarcosine oxidase subunit delta heterotetrameric; KEGG: rec:RHECIAT_PA0000341 sarcosine oxidase protein, delta subunit
YP_002985199.1	TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PA0000340 sarcosine oxidase protein, beta subunit; SNP /replace=C; SNP /replace=G
YP_002985200.1	PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PA0000339 putative transcriptional regulator protein, AraC family; SNP /replace=G; SNP /replace=C