-- dump date 20120504_160154 -- class Genbank::CDS -- table cds_note -- id note YP_002277890.1 PFAM: protein of unknown function DUF303 acetylesterase KEGG: rec:RHECIAT_CH0002780 hypothetical protein YP_002277893.1 PFAM: Forkhead-associated protein; KEGG: ret:RHE_PE00147 hypothetical protein YP_002277894.1 PFAM: type II secretion system protein; KEGG: ret:RHE_PE00148 pilus assembly protein YP_002277895.1 PFAM: type II secretion system protein; KEGG: ret:RHE_PE00149 hypothetical protein YP_002277896.1 PFAM: type II secretion system protein E; KEGG: ret:RHE_PE00150 bacterial type II secretion system protein YP_002277897.1 TIGRFAM: Flp pilus assembly protein CpaB; KEGG: ret:RHE_PE00151 hypothetical protein YP_002277899.1 KEGG: ret:RHE_PE00153 hypothetical protein YP_002277900.1 KEGG: ret:RHE_PE00154 hypothetical protein YP_002277901.1 KEGG: ret:RHE_PE00155 hypothetical protein YP_002277902.1 PFAM: peptidase A24A prepilin type IV; KEGG: ret:RHE_PE00156 hypothetical protein YP_002277905.1 PFAM: type II secretion system protein E; KEGG: ret:RHE_PE00157 bacterial type II secretion system protein YP_002277906.1 KEGG: rec:RHECIAT_PA0000344 hypothetical protein YP_002277907.1 PFAM: sarcosine oxidase subunit gamma; KEGG: rec:RHECIAT_PA0000343 sarcosine oxidase protein, gamma subunit YP_002277908.1 TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: rec:RHECIAT_PA0000342 sarcosine oxidase protein, alpha subunit YP_002277909.1 TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: rec:RHECIAT_PA0000341 sarcosine oxidase protein, delta subunit YP_002277910.1 TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PA0000340 sarcosine oxidase protein, beta subunit YP_002277911.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: rec:RHECIAT_PA0000339 transcriptional regulator protein, AraC family YP_002277912.1 PFAM: helix-turn-helix domain protein; cupin; KEGG: rec:RHECIAT_PA0000338 transcriptional regulator protein YP_002277913.1 PFAM: glutamine amidotransferase class-II; KEGG: ret:RHE_PE00421 amidophosphoribosyl transferase protein YP_002277914.1 PFAM: glutamate synthase alpha subunit domain protein; KEGG: ret:RHE_PE00420 formyl-methanofuran dehydrogenase domain 3 protein YP_002277915.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; dihydroorotate dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: ret:RHE_PE00419 glutamate synthase large subunit 2 protein YP_002277916.1 TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region; KEGG: rec:RHECIAT_PA0000334 glutamine sinthetase protein YP_002277917.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_002277918.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002277919.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: smd:Smed_3311 glycine cleavage T protein (aminomethyl transferase) YP_002277920.1 KEGG: ret:RHE_PE00414 hypothetical protein YP_002277921.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ret:RHE_PE00413 probable ferredoxin protein YP_002277922.1 KEGG: ret:RHE_PE00412 hypothetical protein YP_002277923.1 PFAM: flavin-containing monooxygenase FMO; KEGG: ret:RHE_PE00411 probable monooxygenase protein YP_002277924.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: ret:RHE_PE00410 chemotaxis protein YP_002277925.1 blocks the formation of polar Z-ring septums YP_002277926.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_PE00408 cell division inhibitor MinD protein YP_002277927.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_002277928.1 KEGG: smd:Smed_5161 hypothetical protein YP_002277929.1 KEGG: ret:RHE_CH00434 hypothetical protein YP_002277930.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: smd:Smed_4458 cold-shock protein YP_002277931.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: ret:RHE_PE00406 probable aminomethyltransferase protein YP_002277932.1 PFAM: amino acid permease-associated region; KEGG: ret:RHE_PE00405 probable amino acid transporter, permease protein YP_002277933.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_PA0000323 probable alcohol dehydrogenase protein YP_002277934.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PA0000322 amine oxidase protein YP_002277935.1 3'-5' exonuclease of DNA polymerase III YP_002277936.1 PFAM: protein of unknown function DUF1127; KEGG: ret:RHE_PE00401 hypothetical protein YP_002277937.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate YP_002277938.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_PA0000318 2-deoxy-D-gluconate 3-dehydrogenase protein YP_002277939.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PA0000317 transcriptional regulator protein, GntR family YP_002277940.1 KEGG: rec:RHECIAT_PA0000316 hypothetical protein YP_002277941.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000315 multidrug resistance transporter protein YP_002277942.1 PFAM: flagellin domain protein; KEGG: rec:RHECIAT_PA0000314 flagellin C protein YP_002277943.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000262 ABC transporter, substrate-binding protein YP_002277944.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aha:AHA_3094 peptide ABC transporter, permease protein YP_002277945.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00330 peptide ABC transporter, permease protein YP_002277946.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: vha:VIBHAR_07043 ABC-type transporter ATPase componen YP_002277947.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00328 peptide ABC transporter, ATP-binding protein YP_002277948.1 PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: rec:RHECIAT_PA0000313 probable beta-N-acetylhexosaminidase protein YP_002277949.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: atu:Atu3405 haloalkanoic acid dehalogenase YP_002277950.1 PFAM: O-methyltransferase family 2; methyltransferase small; methyltransferase; KEGG: rec:RHECIAT_CH0000851 SAM-dependent methyltransferase protein YP_002277951.1 PFAM: ROK family protein; KEGG: rec:RHECIAT_PA0000310 probable transcriptional regulator protein, ROK/CRP family YP_002277952.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000309 probable transporter, permease protein YP_002277953.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PE00386 short chain dehydrogenase YP_002277954.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rec:RHECIAT_PA0000307 transcriptional regulator protein YP_002277955.1 PFAM: endoribonuclease L-PSP; KEGG: ret:RHE_PE00384 probable translation initiation inhibitor protein, YjgF family YP_002277956.1 KEGG: rec:RHECIAT_PA0000305 hypothetical protein YP_002277957.1 PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: rec:RHECIAT_PA0000304 hypothetical protein YP_002277958.1 PFAM: alanine racemase; KEGG: rec:RHECIAT_PA0000303 amino acid processing protein YP_002277959.1 KEGG: bvi:Bcep1808_2635 hypothetical protein YP_002277960.1 KEGG: bvi:Bcep1808_2634 hypothetical protein YP_002277961.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000297 probable sugar uptake ABC transporter, ATP-binding protein YP_002277962.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00370 probable sugar uptake ABC transporter, substrate-binding protein YP_002277963.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00369 probable sugar uptake ABC transporter, permease protein YP_002277964.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00368 probable sugar uptake ABC transporter, permease protein YP_002277965.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_PE00367 probable oxidoreductase protein YP_002277966.1 PFAM: dienelactone hydrolase; KEGG: rec:RHECIAT_PA0000292 probable dienelactone hydrolase protein YP_002277967.1 KEGG: mrd:Mrad2831_4419 amidase expression-regulating protein YP_002277968.1 PFAM: ANTAR domain protein; KEGG: mrd:Mrad2831_4420 response regulator receiver and ANTAR domain protein YP_002277969.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mrd:Mrad2831_4421 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002277970.1 PFAM: extracellular ligand-binding receptor; KEGG: mrd:Mrad2831_4422 extracellular ligand-binding receptor YP_002277971.1 PFAM: inner-membrane translocator; KEGG: mrd:Mrad2831_4423 inner-membrane translocator YP_002277972.1 PFAM: inner-membrane translocator; ABC transporter; SMART: AAA ATPase; KEGG: mrd:Mrad2831_4424 ABC transporter YP_002277973.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mrd:Mrad2831_4425 ABC transporter YP_002277974.1 PFAM: amidase; KEGG: reh:H16_A1469 amidase YP_002277975.1 KEGG: rec:RHECIAT_PA0000289 hypothetical protein YP_002277976.1 KEGG: ret:RHE_PE00365 hypothetical protein YP_002277977.1 KEGG: rec:RHECIAT_PA0000290 hypothetical protein YP_002277978.1 KEGG: rec:RHECIAT_PA0000220 hypothetical protein YP_002277979.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: oan:Oant_3754 TrkA-C domain protein YP_002277980.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_002277981.1 PFAM: periplasmic binding protein; KEGG: pde:Pden_1168 periplasmic binding protein YP_002277982.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: pde:Pden_1169 transport system permease protein YP_002277983.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: pde:Pden_1170 ABC transporter YP_002277984.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: eca:ECA3093 hypothetical protein YP_002277985.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_4324 GntR domain protein YP_002277986.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bid:Bind_2080 NAD-dependent epimerase/dehydratase YP_002277987.1 PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000118 probable sugar ABC transporter, ATP-binding protein YP_002277988.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000119 probable sugar ABC transporter, substrate-binding protein YP_002277989.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000120 probable sugar ABC transporter, permease protein YP_002277990.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000121 probable sugar ABC transporter, permease protein YP_002277991.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rec:RHECIAT_CH0002612 hypothetical protein YP_002277992.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_CH00601 probable transcriptional regulator protein, TetR family YP_002277993.1 PFAM: endoribonuclease L-PSP; KEGG: atc:AGR_C_2721 hypothetical protein YP_002277994.1 PFAM: NUDIX hydrolase; KEGG: mlo:mlr1881 hypothetical protein YP_002277995.1 KEGG: smd:Smed_4426 hypothetical protein YP_002277996.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_PC0000244 hypothetical protein YP_002277997.1 PFAM: substrate transporter; major facilitator superfamily MFS_1; KEGG: atc:AGR_C_4589 benzoate transport protein YP_002277998.1 PFAM: regulatory protein MarR; KEGG: pol:Bpro_2058 transcriptional regulator, MarR family YP_002277999.1 PFAM: flavin reductase; KEGG: atc:AGR_C_4599 hypothetical protein YP_002278000.1 PFAM: acyl-CoA dehydrogenase; KEGG: atc:AGR_C_4598 hypothetical protein YP_002278001.1 PFAM: amidohydrolase; KEGG: atc:AGR_C_4595 hypothetical protein YP_002278002.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: atc:AGR_C_4594 hypothetical protein YP_002278003.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: rha:RHA1_ro01857 6-chlorohydroxyquinol-1,2-dioxygenase YP_002278004.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_002278005.1 TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rec:RHECIAT_PA0000196 ATP-dependent DNA ligase protein YP_002278006.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_4013 hypothetical protein YP_002278007.1 PFAM: major facilitator superfamily MFS_1; KEGG: lch:Lcho_4332 major facilitator superfamily MFS_1 YP_002278008.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ret:RHE_PF00485 probable gluconolactonase precursor protein YP_002278009.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PF00484 probable sugar ABC transporter, permease protein YP_002278010.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PF00483 probable sugar ABC transporter, permease protein YP_002278011.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PF00482 probable sugar ABC transporter, ATP binding protein YP_002278012.1 KEGG: ret:RHE_PF00481 probable sugar ABC transporter, substrate-binding protein YP_002278013.1 PFAM: ATP-binding region ATPase domain protein; KEGG: ret:RHE_PF00480 probable two-component sensor histidine kinase protein YP_002278014.1 PFAM: response regulator receiver; SMART: regulatory protein LuxR; KEGG: ret:RHE_PF00479 probable two-component response regulator protein YP_002278015.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: rec:RHECIAT_CH0000188 sensory box/GGDEF family protein YP_002278016.1 PFAM: protein of unknown function DUF1206; KEGG: rec:RHECIAT_PC0000073 hypothetical protein YP_002278017.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PE00360 transcriptional regulator protein, LacI family YP_002278018.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00359 probable sugar ABC transporter, substrate-binding protein YP_002278019.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00358 probable sugar ABC transporter, permease protein YP_002278020.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00357 probable sugar ABC transporter, permease protein YP_002278021.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00356 probable sugar ABC transporter, ATP-binding protein YP_002278022.1 KEGG: ret:RHE_PE00355 inulin fructotransferase protein YP_002278023.1 KEGG: ret:RHE_PE00354 beta-fructofuranosidase protein; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32 YP_002278024.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ret:RHE_PE00353 carboxymuconolactone decarboxylase protein YP_002278025.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ret:RHE_PE00352 taurine dioxygenase protein YP_002278026.1 catalyzes the formation of fumarate from aspartate YP_002278027.1 PFAM: L-asparaginase II; KEGG: rec:RHECIAT_PA0000280 L-asparaginase II protein YP_002278028.1 PFAM: amino acid permease-associated region; KEGG: ret:RHE_PE00349 L-asparagine permease protein YP_002278029.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PA0000278 L-asparagine operon transcriptional regulator protein (repressor), GntR family YP_002278030.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PE00347 L-asparagine operon transcriptional regulator (repressor) protein, GntR family YP_002278031.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; cupin; KEGG: rec:RHECIAT_PA0000276 hypothetical protein YP_002278032.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000275 peptide ABC transporter, ATP-binding protein YP_002278033.1 TIGRFAM: pyridoxal phosphate-dependent enzyme; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; L-seryl-tRNA selenium transferase; KEGG: rec:RHECIAT_PA0000274 L-seryl-tRNA(sec) selenium transferase protein YP_002278034.1 PFAM: endoribonuclease L-PSP; KEGG: ret:RHE_PE00343 translation initiation inhibitor protein, YjgF family YP_002278035.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000272 probable peptide ABC transporter, permease protein YP_002278036.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00341 probable peptide ABC transporter, permease protein YP_002278037.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000270 probable peptide ABC transporter, substrate-binding protein YP_002278038.1 PFAM: protein of unknown function DUF1349; KEGG: rec:RHECIAT_PA0000269 hypothetical protein YP_002278042.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bhe:BH06670 filamentous hemagglutinin YP_002278045.1 KEGG: btr:Btr_1170 hypothetical protein YP_002278046.1 PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: btr:Btr_0409 hemolysin activation protein precursor YP_002278047.1 PFAM: hypothetical protein; KEGG: gbe:GbCGDNIH1_1665 hypothetical protein YP_002278048.1 PFAM: hydroxyethylthiazole kinase; KEGG: ret:RHE_PE00337 hydoxyethylthiazole kinase protein YP_002278049.1 KEGG: ret:RHE_PE00336 thiamine-phosphate pyrophosphorylase protein; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_002278050.1 KEGG: rec:RHECIAT_PA0000265 phosphomethylpyrimidine kinase protein; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_002278051.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PE00334 hypothetical protein YP_002278052.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: rec:RHECIAT_PA0000263 beta-N-acetylhexosaminidase protein YP_002278053.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000262 ABC transporter, substrate-binding protein YP_002278054.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00331 peptide ABC transporter, permease protein YP_002278055.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000260 ABC transporter, permease protein YP_002278056.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00329 peptide ABC transporter, ATP-binding protein YP_002278057.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00328 peptide ABC transporter, ATP-binding protein YP_002278058.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH01330 probable glyoxalase protein YP_002278059.1 KEGG: rec:RHECIAT_PA0000257 hypothetical protein YP_002278060.1 PFAM: HpcH/HpaI aldolase; KEGG: rec:RHECIAT_PA0000256 probable hydroxyacid aldolase protein YP_002278061.1 KEGG: rec:RHECIAT_PA0000255 hypothetical protein YP_002278062.1 TIGRFAM: choline sulfate-utilization transcription factor; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PA0000253 probable transcriptional regulator protein, LysR family YP_002278063.1 TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: ret:RHE_PE00324 choline sulfatase protein YP_002278064.1 PFAM: xylose isomerase; KEGG: ret:RHE_PE00323 hypothetical protein YP_002278065.1 PFAM: amidase; KEGG: ret:RHE_PE00322 hypothetical protein YP_002278066.1 KEGG: ret:RHE_PE00321 hypothetical protein YP_002278067.1 PFAM: Protein of unknown function DUF1810; KEGG: rec:RHECIAT_PA0000248 hypothetical protein YP_002278068.1 KEGG: rec:RHECIAT_PA0000247 hypothetical protein YP_002278069.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_PE00303 transcriptional regulator protein, TetR family YP_002278070.1 KEGG: rec:RHECIAT_PA0000245 hypothetical protein YP_002278071.1 KEGG: ret:RHE_PE00301 hypothetical protein YP_002278072.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: ret:RHE_PE00300 probable N-methylhydantoinase (ATP-hydrolyzing)/5-oxoprolinase protein YP_002278073.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_PA0000243 oxidoreductase protein YP_002278074.1 TIGRFAM: prevent-host-death family protein; KEGG: swi:Swit_1318 prevent-host-death family protein YP_002278075.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rec:RHECIAT_PA0000242 transcriptional regulator protein, IclR family YP_002278076.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_002278077.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_PE00294 probable RNA polymerase sigma factor protein, ECF subfamily YP_002278078.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_PA0000239 hypothetical protein YP_002278079.1 TIGRFAM: L-rhamnose catabolism isomerase; PFAM: xylose isomerase; KEGG: rec:RHECIAT_PA0000238 sugar isomerase protein YP_002278080.1 TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_PA0000237 oxidoreductase protein, short-chain dehydrogenases/reductases (SDR) family YP_002278081.1 PFAM: regulatory protein DeoR; hypothetical protein; KEGG: rec:RHECIAT_PA0000236 probable transcriptional regulator protein, DeoR family YP_002278082.1 TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein YP_002278083.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00288 probable sugar ABC transporter, ATP-binding protein YP_002278084.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PE00287 probable sugar ABC transporter, permease protein YP_002278085.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PE00286 probable sugar ABC transporter, permease protein YP_002278086.1 TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: ret:RHE_PE00285 hypothetical protein YP_002278087.1 PFAM: carbohydrate kinase; KEGG: rec:RHECIAT_PA0000230 sugar kinase protein YP_002278088.1 KEGG: ret:RHE_PE00283 hypothetical protein YP_002278089.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00282 ferrichrome-iron transporter, ATP-binding protein YP_002278090.1 KEGG: ret:RHE_PE00281 3-hydroxyisobutyrate dehydrogenase protein; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding YP_002278091.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rec:RHECIAT_PA0000226 probable alcohol dehydrogenase protein, glucose-methanol-choline (GMC) family YP_002278092.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PA0000225 probable branched-chain amino acid ABC transporter, permease protein YP_002278093.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PE00278 probable branched-chain amino acid ABC transporter, permease protein YP_002278094.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00277 probable branched-chain amino acid ABC transporter, ATP-binding protein YP_002278095.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000222 branched-chain amino acid ABC transporter, ATP-binding protein YP_002278096.1 KEGG: rec:RHECIAT_PA0000221 probable branched-chain amino acid ABC transporter, substrate-binding protein YP_002278097.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PE00273 probable transcriptional regulator protein, LysR family YP_002278098.1 KEGG: bbt:BBta_3444 membrane protein of unknown function YP_002278099.1 KEGG: bpa:BPP2186 decarboxylase YP_002278101.1 PFAM: cupin; KEGG: rec:RHECIAT_PA0000218 pectin degradation protein YP_002278102.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase; KEGG: rec:RHECIAT_PA0000217 glutaryl-CoA dehydrogenase protein YP_002278103.1 KEGG: rec:RHECIAT_PA0000216 hypothetical protein YP_002278104.1 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_002278105.1 PFAM: SNARE associated Golgi protein; KEGG: rec:RHECIAT_PA0000214 hypothetical conserved membrane protein YP_002278106.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_PA0000213 probable xylitol dehydrogenase protein YP_002278107.1 PFAM: copper resistance protein CopC; KEGG: rec:RHECIAT_PA0000212 hypothetical protein YP_002278108.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002278110.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002278111.1 KEGG: rec:RHECIAT_PA0000209 potassium-transporting ATPase protein, C chain; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit YP_002278112.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: ret:RHE_PE00263 two-component sensor histidine kinase protein (probably regulates osmosensitive potassium channel) YP_002278113.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ret:RHE_PE00262 two-component response regulator protein (probably regulates osmosensitive potassium channel) YP_002278114.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rec:RHECIAT_PA0000206 PTS system, regulator protein YP_002278115.1 PFAM: porin; KEGG: rec:RHECIAT_PA0000205 porin outer membrane protein YP_002278116.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PA0000204 probable sulfate uptake ABC transporter, substrate-binding protein YP_002278117.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000203 sulfate uptake ABC transporter, permease protein YP_002278118.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00257 probable sulfate uptake ABC transporter, permease protein YP_002278119.1 KEGG: rec:RHECIAT_PA0000201 probable sulfate uptake ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase YP_002278120.1 PFAM: cell wall hydrolase SleB; KEGG: rec:RHECIAT_PA0000200 cell wall-associated hydrolase protein YP_002278121.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002278122.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000193 probable sugar ABC transporter, ATP-binding protein YP_002278123.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00247 probable sugar ABC transporter, permease protein YP_002278124.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000191 probable sugar ABC transporter, permease protein YP_002278125.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PA0000190 sugar ABC transporter, substrate-binding protein YP_002278126.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rec:RHECIAT_PA0000189 cystathionine gamma-synthase protein YP_002278127.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PA0000188 probable transcriptional regulator protein, GntR family YP_002278128.1 KEGG: atc:AGR_L_3014 hypothetical protein YP_002278129.1 KEGG: rec:RHECIAT_PA0000187 hypothetical protein YP_002278130.1 KEGG: rec:RHECIAT_PA0000186 cytochrome c-like protein YP_002278131.1 PFAM: cytochrome B561; KEGG: rec:RHECIAT_PA0000185 cytochrome b561 protein YP_002278132.1 KEGG: rec:RHECIAT_PA0000184 hypothetical protein YP_002278133.1 KEGG: rec:RHECIAT_PA0000183 hypothetical protein YP_002278134.1 KEGG: ret:RHE_CH02518 hypothetical conserved membrane protein YP_002278135.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: rec:RHECIAT_PA0000181 multicopper oxidase protein YP_002278136.1 PFAM: blue (type 1) copper domain protein; KEGG: ret:RHE_CH02520 copper-containing oxidase protein YP_002278137.1 KEGG: rec:RHECIAT_PA0000179 hypothetical protein YP_002278138.1 KEGG: ret:RHE_PE00237 hypothetical protein YP_002278139.1 KEGG: ret:RHE_PE00236 hypothetical protein YP_002278140.1 KEGG: rec:RHECIAT_PA0000175 hypothetical protein YP_002278141.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_PE00234 endonuclease/exonuclease/phosphatase protein YP_002278142.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: rec:RHECIAT_PA0000173 transmembrane cardiolipin synthetase protein YP_002278143.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: ret:RHE_PE00232 probable DNA-directed DNA polymerase protein YP_002278144.1 KEGG: rec:RHECIAT_PA0000171 hypothetical protein YP_002278145.1 KEGG: rec:RHECIAT_PA0000170 hypothetical protein YP_002278146.1 KEGG: rec:RHECIAT_PA0000169 hypothetical protein YP_002278147.1 PFAM: glutathione S-transferase; KEGG: ret:RHE_PE00210 glutathione S-transferase protein YP_002278148.1 TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: rec:RHECIAT_PA0000163 DNA ligase protein YP_002278149.1 KEGG: rec:RHECIAT_PA0000162 probable DNA topoisomerase I protein YP_002278150.1 KEGG: rec:RHECIAT_PA0000161 glycosyl hydrolase (glycogen debranching) protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002278151.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_PA0000160 probable dehydrogenase/reductase protein YP_002278152.1 KEGG: fjo:Fjoh_4680 hypothetical protein YP_002278153.1 KEGG: rec:RHECIAT_CH0000569 hypothetical protein YP_002278154.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_PE00206 hypothetical protein YP_002278155.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_PA0000157 acetyltransferase protein YP_002278156.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_002278157.1 KEGG: ret:RHE_PE00202 3-oxoadipate CoA-transferase subunit B protein; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_002278158.1 KEGG: rec:RHECIAT_PA0000154 3-oxoadipate CoA-transferase protein, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_002278159.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ret:RHE_PE00200 probable transcriptional regulator protein, IclR family YP_002278160.1 TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: mlo:mlr8246 acid phosphatase YP_002278161.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: mlo:mlr1826 methylamine utilization protein YP_002278162.1 PFAM: regulatory protein ArsR; KEGG: ret:RHE_PE00196 probable transcriptional regulator protein, ArsR family YP_002278163.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: ret:RHE_PE00195 probable alpha-L-arabinofuranosidase protein YP_002278164.1 PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PE00194 probable oligopeptide ABC transporter, ATP-binding protein YP_002278165.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000149 ABC transporter, permease protein YP_002278166.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000148 probable oligopeptide ABC transporter, permease protein YP_002278167.1 KEGG: ret:RHE_PE00191 probable oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002278168.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000146 probable ABC transporter, ATP-binding protein YP_002278169.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_PC0000478 methyl-accepting chemotaxis protein YP_002278170.1 KEGG: rec:RHECIAT_PA0000112 C-terminal processing peptidase protein; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_002278171.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002278172.1 KEGG: hmo:HM1_1017 hypothetical protein YP_002278173.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hmo:HM1_1016 ATPase YP_002278174.1 PFAM: glycoside hydrolase family 4; KEGG: rec:RHECIAT_PA0000101 alpha-galactosidase protein YP_002278175.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00093 probable peptide ABC transporter, ATP-binding protein YP_002278176.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00092 probable peptide ABC transporter, permease protein YP_002278177.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PA0000098 probable peptide ABC transporter, permease protein YP_002278178.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000097 alpha-galactoside ABC transporter, substrate-binding protein YP_002278179.1 PFAM: glycoside hydrolase family 4; KEGG: rec:RHECIAT_PA0000096 alpha-galactosidase protein YP_002278180.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rec:RHECIAT_PA0000095 probable transcriptional regulator protein, AraC family YP_002278181.1 PFAM: O-methyltransferase family 2; Methyltransferase type 11; methyltransferase; KEGG: mpt:Mpe_A0328 hypothetical protein YP_002278182.1 KEGG: ret:RHE_PE00087 hypothetical protein YP_002278183.1 KEGG: rec:RHECIAT_PA0000093 hypothetical protein YP_002278184.1 KEGG: rec:RHECIAT_PA0000092 hypothetical protein YP_002278185.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rec:RHECIAT_PA0000091 sarcosine dehydrogenase protein YP_002278186.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: ret:RHE_PE00083 hypothetical protein YP_002278187.1 PFAM: cytochrome c oxidase subunit II; KEGG: mrd:Mrad2831_0033 cytochrome c oxidase, subunit II YP_002278188.1 KEGG: rec:RHECIAT_PA0000089 hypothetical protein YP_002278189.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: rec:RHECIAT_PA0000088 histidine ammonia-lyase protein YP_002278190.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ret:RHE_PE00080 octopine ABC transporter, ATP-binding protein YP_002278191.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00079 octopine ABC transporter, permease protein YP_002278192.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00078 octopine ABC transporter, permease protein YP_002278193.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PE00077 probable octopine ABC transporter, substrate-binding protein YP_002278194.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rec:RHECIAT_PA0000082 histidine utilization transcriptional regulator (repressor) protein YP_002278195.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rec:RHECIAT_PA0000081 transcriptional regulator protein, GntR family YP_002278196.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_002278197.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_002278198.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002278199.1 KEGG: atc:AGR_C_2159 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_002278200.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ret:RHE_PE00071 formiminoglutamase protein YP_002278201.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002278202.1 PFAM: protein of unknown function DUF886; KEGG: rec:RHECIAT_PA0000075 hypothetical protein YP_002278203.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_PA0000074 molecular chaperone, DnaJ family YP_002278204.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: ret:RHE_PE00067 hypothetical protein YP_002278205.1 KEGG: rec:RHECIAT_PA0000068 hypothetical protein YP_002278206.1 KEGG: ret:RHE_PE00063 hydrolase protein YP_002278207.1 PFAM: RES domain protein; KEGG: rec:RHECIAT_PA0000066 hypothetical protein YP_002278208.1 KEGG: rec:RHECIAT_PA0000065 hypothetical protein YP_002278209.1 TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PA0000064 transcriptional regulator protein, LysR family YP_002278210.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: rec:RHECIAT_PA0000063 beta-ketoadipate enol-lactone hydrolase protein YP_002278211.1 KEGG: ret:RHE_PE00058 gamma-carboxymuconolactone decarboxylase protein; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase YP_002278212.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: ret:RHE_PE00057 protocatechuate 3,4-dioxygenase beta chain protein YP_002278213.1 KEGG: ret:RHE_PE00056 protocatechuate 3,4-dioxygenase alpha chain protein; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase YP_002278214.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_002278215.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: azc:AZC_1453 shikimate dehydrogenase family protein YP_002278216.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bja:bll6385 oxidoreductase YP_002278217.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: azc:AZC_1452 ABC transporter ATP-binding protein YP_002278218.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1450 ABC transporter permease protein YP_002278219.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_1449 ABC transporter permease protein YP_002278220.1 PFAM: dehydroquinase class II; KEGG: azc:AZC_1447 dehydroquinase YP_002278221.1 PFAM: extracellular solute-binding protein family 3; KEGG: azc:AZC_1451 ABC transporter substrate binding protein YP_002278222.1 PFAM: xylose isomerase; KEGG: oan:Oant_4428 4-hydroxyphenylpyruvate dioxygenase YP_002278223.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_5700 transcriptional regulator, GntR family YP_002278224.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: jan:Jann_4140 transcriptional regulator, GntR family YP_002278225.1 PFAM: beta-lactamase domain protein; KEGG: rec:RHECIAT_PA0000058 hydrolase protein, beta-lactamase superfamily YP_002278226.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_PE00053 hypothetical protein YP_002278227.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PE00052 hydrolase protein YP_002278228.1 KEGG: rec:RHECIAT_PA0000055 hypothetical protein YP_002278229.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_PA0000054 glycosyltransferase protein YP_002278230.1 PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_PE00049 adenylate cyclase protein YP_002278231.1 TIGRFAM: methyltransferase FkbM family; KEGG: rec:RHECIAT_PA0000052 hypothetical protein YP_002278232.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_CH01124 probable quinone oxidoreductase protein YP_002278233.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH01125 probable transcriptional regulator protein, LysR family YP_002278234.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_B2548 FAD dependent oxidoreductase YP_002278235.1 PFAM: protein of unknown function UPF0074; hypothetical protein; KEGG: atc:AGR_C_402 hypothetical protein YP_002278236.1 KEGG: rec:RHECIAT_PA0000050 hypothetical protein YP_002278237.1 KEGG: rec:RHECIAT_PA0000049 hypothetical protein YP_002278238.1 KEGG: rec:RHECIAT_PA0000046 probable UDP-glucose 6-dehydrogenase protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002278239.1 KEGG: rec:RHECIAT_PA0000045 adenylate cyclase protein YP_002278240.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PE00042 probable oligopeptide ABC transporter, ATP-binding protein YP_002278241.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PA0000043 probable oligopeptide ABC transporter, substrate-binding protein YP_002278242.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00040 probable oligopeptide ABC transporter, permease protein YP_002278243.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00039 probable oligopeptide ABC transporter, permease protein YP_002278244.1 KEGG: rec:RHECIAT_PA0000040 membrane-anchored protein YP_002278245.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_PA0000039 glycosyltransferase protein YP_002278246.1 PFAM: Glycosyltransferase 28 domain; KEGG: rec:RHECIAT_PA0000038 glycosyltransferase protein YP_002278247.1 PFAM: hypothetical protein; KEGG: bid:Bind_0532 helix-turn-helix type 11 domain protein YP_002278248.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00839 glyoxalase protein YP_002278249.1 PFAM: protein of unknown function DUF55; KEGG: rec:RHECIAT_CH0000926 hypothetical protein YP_002278250.1 PFAM: ABC transporter; KEGG: rec:RHECIAT_PA0000037 multidrug ABC transporter, ATP-binding and permease protein YP_002278251.1 PFAM: cyclic nucleotide-binding; KEGG: rec:RHECIAT_PA0000036 transcriptional regulator protein YP_002278252.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ret:RHE_PE00033 hypothetical protein YP_002278253.1 KEGG: ret:RHE_PE00032 hypothetical protein YP_002278254.1 PFAM: substrate transporter; KEGG: rec:RHECIAT_PA0000031 ABC transporter, permease protein YP_002278255.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: rec:RHECIAT_PA0000030 cytochrome o ubiquinol oxidase protein, subunit II YP_002278256.1 KEGG: rec:RHECIAT_PA0000029 cytochrome o ubiquinol oxidase protein, subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_002278257.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: ret:RHE_PE00028 cytochrome o ubiquinol oxidase, subunit III protein YP_002278258.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: ret:RHE_PE00027 cytochrome o ubiquinol oxidase, subunit IV protein YP_002278259.1 PFAM: Surfeit locus 1 family protein; KEGG: ret:RHE_PE00026 probable cytochrome oxidase complex biogenesis factor protein YP_002278260.1 PFAM: acyltransferase 3; KEGG: ret:RHE_PE00025 acyltransferase protein YP_002278261.1 KEGG: ret:RHE_PE00024 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002278262.1 KEGG: ret:RHE_PE00023 hypothetical protein YP_002278263.1 KEGG: ret:RHE_PE00021 hypothetical protein YP_002278264.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000021 ABC transporter, ATP-binding protein YP_002278265.1 PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: rec:RHECIAT_PA0000020 multidrug ABC transporter, ATP-binding protein YP_002278266.1 KEGG: ret:RHE_PE00018 hypothetical protein YP_002278267.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PA0000018 transcriptional regulator protein YP_002278268.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PA0000017 probable transcriptional regulator protein, LacI family YP_002278269.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000016 tartrate transporter protein YP_002278270.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PA0000015 multidrug transporter protein, Bcr/CflA subfamily YP_002278271.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_PE00014 probable transcriptional regulator protein, TetR family YP_002278272.1 LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment YP_002278273.1 KEGG: rec:RHECIAT_PA0000012 hypothetical protein YP_002278274.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_002278275.1 PFAM: alpha-2-macroglobulin domain protein; N/apple PAN domain protein; alpha-2-macroglobulin domain protein 2; KEGG: ret:RHE_PE00010 hypothetical protein YP_002278276.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: ret:RHE_PE00009 probable penicillin-binding protein YP_002278277.1 KEGG: ret:RHE_PE00008 maltooligosyl trehalose synthase protein; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002278278.1 KEGG: ret:RHE_PE00007 copper-transporting ATPase protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_002278279.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: ret:RHE_PE00006 copper eflux transcriptional regulator protein, MerR family YP_002278281.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity YP_002278282.1 KEGG: rec:RHECIAT_PA0000003 hypothetical protein YP_002278283.1 PFAM: protein of unknown function UPF0005; KEGG: rec:RHECIAT_PA0000002 hypothetical protein YP_002278284.1 PFAM: protein of unknown function DUF1612; KEGG: rec:RHECIAT_PA0000001 hypothetical protein YP_002278285.1 PFAM: replication protein C; KEGG: rec:RHECIAT_PA0000383 plasmid replication protein RepCa YP_002278286.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: rec:RHECIAT_PA0000382 plasmid partitioning protein RepBa YP_002278287.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: rec:RHECIAT_PA0000381 plasmid partitioning protein RepAa YP_002278288.1 catalyzes the formation of precorrin 6x from precorrin 5 YP_002278289.1 TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: rec:RHECIAT_PA0000378 precorrin-3b synthase protein YP_002278290.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_002278291.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_002278292.1 catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine YP_002278293.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_002278294.1 KEGG: rec:RHECIAT_PA0000373 precorrin-6Y C5,15-methyltransferase (decarboxylating) protein; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002278295.1 KEGG: rec:RHECIAT_PA0000372 precorrin-4 c(11)-methyltransferase protein; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002278296.1 PFAM: xylose isomerase; KEGG: ret:RHE_PE00448 sugar epimerase protein YP_002278297.1 PFAM: regulatory protein LacI; KEGG: ret:RHE_PE00447 probable transcriptional regulator protein, LacI family YP_002278298.1 PFAM: fatty acid desaturase; KEGG: rec:RHECIAT_PA0000369 hydrocarbon oxigenase protein YP_002278299.1 TIGRFAM: Rieske [2Fe-2S] domain protein, MocE subfamily; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_PE00445 ferredoxin of the Rieseke type protein YP_002278300.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_PA0000367 ferredoxin--NAD(+) reductase protein YP_002278301.1 PFAM: ketopantoate hydroxymethyltransferase; KEGG: rec:RHECIAT_PA0000366 probable ketopantoate hydroxymethyltransferase protein YP_002278302.1 KEGG: rec:RHECIAT_PA0000365 hypothetical protein YP_002278303.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002278304.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002278305.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002278306.1 PFAM: TPR repeat-containing protein; transcriptional activator domain; Tetratricopeptide TPR_2 repeat protein; KEGG: rec:RHECIAT_PA0000361 trifolitoxin related protein YP_002278307.1 PFAM: protein of unknown function DUF181; KEGG: rec:RHECIAT_PA0000360 hypothetical protein YP_002278308.1 PFAM: TfuA domain protein core; KEGG: ret:RHE_PE00436 hypothetical protein YP_002278309.1 KEGG: rec:RHECIAT_PA0000358 hypothetical protein YP_002278310.1 PFAM: helix-turn-helix domain protein; KEGG: rec:RHECIAT_PA0000357 transcriptional regulator protein, Cro/CI family YP_002278311.1 PFAM: amidohydrolase; KEGG: rec:RHECIAT_PA0000354 amidohydrolase protein YP_002278312.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rec:RHECIAT_PA0000353 probable transcriptional regulator protein, IclR family YP_002278313.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_PA0000352 probable oxidoreductase protein YP_002278314.1 PFAM: mandelate racemase; KEGG: rec:RHECIAT_PA0000351 racemase protein YP_002278315.1 PFAM: Sel1 domain protein repeat-containing protein; peptidase C14 caspase catalytic subunit p20; KEGG: ret:RHE_PE00124 hypothetical protein YP_002278316.1 KEGG: ret:RHE_PE00125 hypothetical protein YP_002278317.1 KEGG: bpd:BURPS668_A2834 hypothetical protein YP_002278318.1 KEGG: ret:RHE_PE00126 hypothetical protein YP_002278320.1 KEGG: ret:RHE_PE00128 hypothetical protein YP_002278321.1 PFAM: OmpA/MotB domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: ret:RHE_PE00129 hypothetical protein YP_002278322.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: ret:RHE_PE00130 hypothetical protein YP_002278323.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; peptidase C14 caspase catalytic subunit p20; KEGG: ret:RHE_PE00131 serine protease protein, trypsin family YP_002278324.1 PFAM: proteinase inhibitor I4 serpin; KEGG: ret:RHE_PE00132 serine proteinase inhibitor protein YP_002278325.1 SMART: serine/threonine protein kinase; KEGG: ret:RHE_PE00133 serine(threonine) kinase protein YP_002278326.1 PFAM: protein of unknown function DUF982; KEGG: ret:RHE_PE00134 hypothetical protein YP_002278327.1 PFAM: pentapeptide repeat protein; KEGG: mmw:Mmwyl1_2777 pentapeptide repeat protein YP_002278328.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; regulatory protein ArsR; KEGG: mlo:mlr1825 probable transcriptional regulator YP_002278329.1 PFAM: protein of unknown function DUF1234; KEGG: mlo:mll1824 hypothetical protein YP_002278330.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002278331.1 KEGG: ret:RHE_CH01413 hypothetical protein YP_002278332.1 PFAM: regulatory protein ArsR; KEGG: ret:RHE_CH01412 probable transcriptional regulator protein, ArsR family YP_002278333.1 KEGG: ret:RHE_PE00397 hypothetical protein YP_002278334.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: rec:RHECIAT_CH0001205 4-oxalocrotonate tautomerase protein YP_002278335.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PE00136 probable transcriptional regulator protein, LysR family YP_002278336.1 KEGG: vvu:VV1_2447 hypothetical protein YP_002278339.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0004013 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002278369.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ret:RHE_PC00057 probable two-component response regulator protein YP_002278370.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_PC00058 probable two-component sensor histidine kinase protein YP_002278371.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ret:RHE_PC00059 nodulation protein YP_002278372.1 PFAM: HpcH/HpaI aldolase; KEGG: ret:RHE_PC00060 citrate lyase, beta subunit protein YP_002278373.1 PFAM: MaoC domain protein dehydratase; KEGG: ret:RHE_PC00061 amine oxidase protein YP_002278374.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ret:RHE_PC00062 methylcrotonoyl-CoA carboxylase biotinylated subunit protein YP_002278375.1 PFAM: carboxyl transferase; KEGG: ret:RHE_PC00063 methylcrotonoyl-CoA carboxylase non-biotinylated subunit protein YP_002278376.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PC00064 isovaleryl-CoA dehydrogenase protein YP_002278377.1 TIGRFAM: prevent-host-death family protein; KEGG: xau:Xaut_5007 prevent-host-death family protein YP_002278378.1 KEGG: ret:RHE_PC00065 hypothetical protein YP_002278379.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PC00066 probable transcriptional regulator protein, AraC family YP_002278380.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PC00067 probable 3-hydroxyacyl-CoA dehydrogenase protein YP_002278381.1 KEGG: ret:RHE_PC00068 probable thiolase protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_002278382.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PC00069 probable acyl-CoA dehydrogenase protein YP_002278383.1 PFAM: dehydrogenase E1 component; KEGG: ret:RHE_PC00070 2-oxoisovalerate dehydrogenase alpha subunit protein YP_002278384.1 PFAM: transketolase; Transketolase domain protein; KEGG: ret:RHE_PC00071 2-oxoisovalerate dehydrogenase beta subunit protein YP_002278385.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: ret:RHE_PC00072 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_002278386.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002278387.1 PFAM: hypothetical protien; KEGG: ret:RHE_PC00075 probable stomatin-like protein YP_002278388.1 PFAM: protein of unknown function DUF107; KEGG: ret:RHE_PC00076 membrane protein for nodulation competitiveness YP_002278389.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ret:RHE_PE00318 hypothetical protein YP_002278390.1 KEGG: ret:RHE_PE00317 hypothetical protein YP_002278391.1 KEGG: ret:RHE_PE00316 hypothetical protein YP_002278392.1 PFAM: type II secretion system protein; KEGG: ret:RHE_PE00315 TadC pilus assembly protein YP_002278393.1 PFAM: type II secretion system protein; KEGG: ret:RHE_PE00314 TadB pilus assembly protein YP_002278394.1 PFAM: type II secretion system protein E; KEGG: ret:RHE_PE00313 probable CpaF pilus assembly protein, ATPase CpaF YP_002278395.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_PE00312 hypothetical protein YP_002278396.1 KEGG: ret:RHE_PE00311 pilus assembly protein YP_002278397.1 PFAM: TadE family protein; KEGG: ret:RHE_PE00310 hypothetical protein YP_002278398.1 PFAM: TadE family protein; KEGG: ret:RHE_PE00309 hypothetical protein YP_002278399.1 KEGG: ret:RHE_PE00308 hypothetical protein YP_002278400.1 KEGG: ret:RHE_PE00307 hypothetical protein YP_002278401.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: ret:RHE_PE00306 CpaC pilus assembly Q protein YP_002278402.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: ret:RHE_PE00305 CpaB pilus assembly protein YP_002278403.1 KEGG: bvi:Bcep1808_6479 Flp/Fap pilin component YP_002278404.1 PFAM: peptidase A24A prepilin type IV; KEGG: ret:RHE_PE00304 CpaA pilus assembly protein YP_002278406.1 PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00190 insertion sequence transposase protein YP_002278407.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO5095 transcriptional regulator TtuA (tartrate utilization transcriptional regulator) YP_002278408.1 KEGG: rpc:RPC_4630 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_002278409.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_PC0000560 probable transcriptional regulator protein (leucine-responsive), AsnC family YP_002278410.1 PFAM: aminotransferase class-III; KEGG: smd:Smed_5596 hypothetical protein YP_002278411.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMa1853 hypothetical protein YP_002278412.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: smd:Smed_5598 haloacid dehalogenase, type II YP_002278413.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; KEGG: sme:SMa1848 GabD5 succinate semialdehyde dehdyrogenase YP_002278414.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ret:RHE_CH02027 probable threonine dehydratase protein YP_002278415.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: ret:RHE_CH02026 ornithine cyclodeaminase protein YP_002278416.1 PFAM: Aldehyde dehydrogenase; KEGG: atc:AGR_L_1806 aldehyde dehydrogenase YP_002278417.1 PFAM: FAD dependent oxidoreductase; KEGG: pde:Pden_4967 FAD dependent oxidoreductase YP_002278418.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pst:PSPTO_0244 hypothetical protein YP_002278419.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: smd:Smed_5603 protein of unknown function DUF861 cupin_3 YP_002278420.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: smd:Smed_5604 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_002278421.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002278422.1 PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_2039 acetyltransferase YP_002278423.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bmc:BAbS19_II08930 protein of unknown function DUF6 YP_002278424.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mes:Meso_2466 transcriptional regulator, AraC family YP_002278425.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: mes:Meso_2465 4-hydroxyphenylacetate 3-hydroxylase YP_002278426.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: mes:Meso_2464 flavin reductase-like, FMN-binding YP_002278427.1 KEGG: nfa:nfa22290 cytochrome P450 monooxygenase YP_002278428.1 PFAM: Aldehyde dehydrogenase; KEGG: bmc:BAbS19_II10540 aldehyde dehydrogenase YP_002278429.1 PFAM: amino acid permease; KEGG: bmt:BSUIS_B1400 hypothetical protein YP_002278430.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bmc:BAbS19_II10520 bacterial regulatory protein, IclR family YP_002278431.1 PFAM: protein of unknown function UPF0261; KEGG: bmb:BruAb2_1104 hypothetical protein YP_002278432.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bme:BMEII0129 hydrolase family protein YP_002278433.1 PFAM: aminotransferase class-III; KEGG: bme:BMEII0130 hypothetical protein YP_002278434.1 PFAM: aminotransferase class-III; KEGG: bme:BMEII0131 4-aminobutyrate aminotransferase YP_002278435.1 PFAM: aminoglycoside phosphotransferase; KEGG: bcs:BCAN_B1195 homoserine kinase YP_002278436.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bcs:BCAN_B1193 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_002278437.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; KEGG: bmt:BSUIS_B1391 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_002278438.1 TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bmt:BSUIS_B1390 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_002278439.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; KEGG: smd:Smed_3222 succinic semialdehyde dehydrogenase YP_002278440.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bmt:BSUIS_B1389 hypothetical protein YP_002278441.1 KEGG: bcs:BCAN_B1188 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase YP_002278442.1 KEGG: bov:BOV_A1060 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase YP_002278443.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I0053 oxidoreductase, short-chain dehydrogenase/reductase family YP_002278444.1 KEGG: bml:BMA10229_A1835 hypothetical protein YP_002278445.1 KEGG: bpm:BURPS1710b_0273 hypothetical protein YP_002278446.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bpl:BURPS1106A_0050 transcriptional regulator YP_002278447.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bml:BMA10229_A1842 branched-chain amino acid ABC transporter, ATP-binding protein YP_002278448.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I0046 branched-chain amino acid ABC transporter, ATP-binding protein YP_002278449.1 PFAM: inner-membrane translocator; KEGG: bmv:BMASAVP1_A3287 branched-chain amino acid ABC transporter, permease protein YP_002278450.1 PFAM: inner-membrane translocator; KEGG: bpd:BURPS668_0056 ABC transporter, permease protein YP_002278451.1 KEGG: bte:BTH_I0049 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative YP_002278452.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_B3144 glucose-methanol-choline oxidoreductase YP_002278453.1 PFAM: Aldehyde dehydrogenase; KEGG: bmt:BSUIS_B1384 hypothetical protein YP_002278454.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bmc:BAbS19_II10370 helix-turn-helix, AraC type YP_002278455.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: bme:BMEII0133 homoprotocatechuate degradative operon repressor YP_002278456.1 KEGG: ret:RHE_PC00093 hypothetical protein YP_002278457.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: ret:RHE_PC00092 probable oxidoreductase protein YP_002278458.1 KEGG: ret:RHE_PC00091 hypothetical protein YP_002278459.1 PFAM: Glutathione S-transferase domain; KEGG: ret:RHE_PC00090 glutathione S-transferase protein YP_002278460.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ret:RHE_PC00089 probable hydrolase protein YP_002278461.1 PFAM: basic membrane lipoprotein; KEGG: ret:RHE_PC00088 hypothetical protein YP_002278462.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00087 probable sugar ABC transporter, ATP-binding protein YP_002278463.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00086 probable sugar ABC transporter, permease protein YP_002278464.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00085 probable sugar ABC transporter, permease protein YP_002278465.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ret:RHE_CH01847 L-lactate dehydrogenase (cytochrome) protein YP_002278466.1 KEGG: rec:RHECIAT_PC0000677 nitrate ABC transporter, substrate-binding protein YP_002278467.1 TIGRFAM: nitrate ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00453 nitrate ABC transporter, permease protein YP_002278468.1 KEGG: rec:RHECIAT_PC0000679 nitrate ABC transporter, ATP-binding protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_002278469.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000092 probable transcriptional regulator protein, GntR family YP_002278470.1 PFAM: basic membrane lipoprotein; KEGG: rec:RHECIAT_PC0000091 ABC transporter, substrate-binding protein YP_002278471.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000090 probable sugar ABC transporter, permease protein YP_002278472.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PE00113 probable sugar ABC transporter, permease protein YP_002278474.1 PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PE00112 isochorismatase protein YP_002278475.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000087 probable sugar ABC transporter, ATP-binding protein YP_002278476.1 PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PE00110 isochorismatase hydrolase protein YP_002278477.1 KEGG: ret:RHE_PE00109 hypothetical protein YP_002278478.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sil:SPO0164 oxidoreductase, FMN-binding/pyridine nucleotide-disulfide oxidoreductase YP_002278479.1 PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PC00116 hypothetical protein YP_002278480.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ret:RHE_PC00117 kinase/esterase protein YP_002278481.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00118 probable amino acid ABC transporter, substrate-binding protein YP_002278483.1 TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_PC00119 probable glutathione-independent formaldehyde dehydrogenase protein YP_002278484.1 KEGG: ret:RHE_PC00121 hypothetical protein YP_002278485.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_PC00122 hypothetical protein YP_002278486.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PC00123 probable transcriptional regulator protein, LysR family YP_002278487.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PC00124 probable transcriptional regulator protein, AraC family YP_002278488.1 PFAM: protein of unknown function DUF849; KEGG: ret:RHE_PC00125 hypothetical protein YP_002278489.1 Converts (S)-3-hydroxyacyl-CoA to 3-oxyacyl-CoA; may also act as a thioesterase YP_002278490.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PC00127 probable acyl-CoA dehydrogenase protein YP_002278491.1 PFAM: CoA-binding domain protein; KEGG: ret:RHE_PC00128 probable acyl-CoA synthetase protein YP_002278492.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA YP_002278493.1 PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PC00130 probable peptide ABC transporter, substrate-binding protein YP_002278494.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00131 probable peptide ABC transporter, permease protein YP_002278495.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00132 probable peptide ABC transporter, permease protein YP_002278496.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00133 probable peptide ABC transporter, ATP-binding protein YP_002278497.1 PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_PC00134 probable transcriptional regulator protein, Cro/CI family YP_002278498.1 PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PC00135 probable peptide ABC transporter, substrate-binding-protein YP_002278499.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: ret:RHE_PC00136 hypothetical protein YP_002278500.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ret:RHE_PC00137 probable lipase/esterase protein YP_002278501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_PC00138 probable RNA polymerase sigma-E factor (sigma-24) protein, ECF subfamily YP_002278502.1 PFAM: von Willebrand factor type A; KEGG: ret:RHE_PC00139 hypothetical protein YP_002278503.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ret:RHE_PC00140 probable gluconolactonase protein YP_002278504.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PC00141 probable transcriptional regulator protein, LacI family YP_002278505.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_PC00142 L-idonate 5-dehydrogenase protein YP_002278506.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_PC00143 probable D-2-hydroxyacid dehydrogensase protein YP_002278507.1 catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate YP_002278508.1 KEGG: ret:RHE_PC00145 gluconate kinase protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_002278509.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ret:RHE_PC00146 probable 6-phosphogluconatedehydrogenase protein YP_002278510.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00147 probable sugar ABC transporter, ATP-binding protein YP_002278511.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00148 probable sugar ABC transporter, permease protein YP_002278512.1 KEGG: ret:RHE_PC00149 sugar ABC transporter, substrate-binding protein YP_002278513.1 KEGG: ret:RHE_PC00150 hypothetical protein YP_002278514.1 KEGG: mlo:mll9181 hypothetical protein YP_002278515.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce0166 ABC transporter permease protein YP_002278516.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll9179 ABC transporter ATP-binding subunit YP_002278517.1 KEGG: npu:Npun_F1746 monooxygenase-like protein YP_002278518.1 PFAM: monooxygenase; KEGG: ret:RHE_PC00151 FMNH2-dependent aliphatic sulfonate monooxygenase protein YP_002278519.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: kra:Krad_2011 diguanylate cyclase YP_002278520.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ret:RHE_PC00153 methyl-accepting chemotaxis protein YP_002278521.1 PFAM: Na+/solute symporter; KEGG: ret:RHE_PC00154 monocarboxylic acid permease protein YP_002278522.1 KEGG: ret:RHE_PC00155 hypothetical protein YP_002278523.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: ret:RHE_PC00156 probable two-component response regulator protein YP_002278524.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein; KEGG: ret:RHE_PC00157 probable two-component sensor histidine kinase protein YP_002278525.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_PC00158 probable transcriptional regulator protein, AsnC family YP_002278526.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00159 probable amino acid ABC transporter, ATP-binding protein YP_002278527.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00160 probable amino acid ABC transporter, substrate-binding protein YP_002278528.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00161 probable amino acid ABC transporter, permease protein YP_002278529.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00162 probable amino acid ABC transporter, permease protein YP_002278530.1 PFAM: homocysteine S-methyltransferase; KEGG: ret:RHE_PC00163 probable homocysteine S-methyltransferase protein YP_002278531.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_PC00164 probable transcriptional regulator protein, MarR family YP_002278532.1 PFAM: CBS domain containing protein; chloride channel core; KEGG: ret:RHE_PC00165 probable chloride channel protein YP_002278533.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: mes:Meso_4580 prevent-host-death family protein YP_002278534.1 PFAM: PilT protein domain protein; KEGG: mes:Meso_4581 PilT protein-like YP_002278535.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00166 probable aliphatic sulphonate ABC transporter, ATP-binding protein YP_002278536.1 PFAM: NMT1/THI5 like domain protein; KEGG: ret:RHE_PC00167 probable aliphatic sulphonate ABC transporter, substrate-binding protein YP_002278537.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00168 probable aliphatic sulphonate ABC transporter, permease protein YP_002278538.1 KEGG: ret:RHE_PC00169 probable monooxygenase protein YP_002278539.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: ret:RHE_PC00179 S-adenosylmethionine: 2-demethylmenaquinone methyltransferase protein YP_002278540.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00180 probable amino acid ABC transporter, substrate-binding protein YP_002278541.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00181 probable amino acid ABC transporter, ATP-binding protein YP_002278542.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00182 probable amino acid ABC transporter, permease protein YP_002278543.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00183 probable amino acid ABC transporter, permease protein YP_002278544.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: ret:RHE_PC00184 probable oxidoreductase protein, short chain dehydrogenase/reductase (SDR) family YP_002278545.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PC00185 probable transcriptional regulator protein, LysR family YP_002278546.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002278547.1 PFAM: LamB/YcsF family protein; KEGG: ret:RHE_PC00187 hypothetical protein YP_002278548.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: ret:RHE_PC00188 hypothetical protein YP_002278549.1 PFAM: Allophanate hydrolase subunit 1; KEGG: ret:RHE_PC00189 hypothetical protein YP_002278550.1 KEGG: ret:RHE_PC00190 hypothetical protein YP_002278551.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ret:RHE_PC00191 acetyl-CoA carboxylase, biotin carboxylase protein YP_002278552.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ret:RHE_PC00192 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_002278553.1 PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PD00313 probable insertion sequence transposase protein YP_002278554.1 PFAM: Integrase catalytic region; KEGG: atc:AGR_L_547 hypothetical protein YP_002278556.1 KEGG: ret:RHE_PC00193 hypothetical protein YP_002278557.1 KEGG: ret:RHE_PC00194 hypothetical protein YP_002278558.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ret:RHE_PC00195 adenylate cyclase protein YP_002278559.1 TIGRFAM: prevent-host-death family protein; KEGG: nwi:Nwi_0856 prevent-host-death protein YP_002278560.1 PFAM: PilT protein domain protein; KEGG: nwi:Nwi_0857 PilT protein YP_002278561.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PC00196 probable transcriptional regulator protein, LacI family YP_002278562.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PC00197 myo-inositol catabolism protein YP_002278563.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00198 probable sugar ABC transporter, substrate-binding protein YP_002278564.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00199 probable sugar ABC transporter, permease protein YP_002278565.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00200 probable sugar ABC transporter, permease protein YP_002278566.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PC00201 probable sugar ABC transporter, ATP-binding protein YP_002278567.1 KEGG: sma:SAV709 hypothetical protein YP_002278568.1 PFAM: helix-turn-helix domain protein; KEGG: bur:Bcep18194_B2562 transcriptional regulator, XRE family YP_002278569.1 PFAM: protein of unknown function DUF344; KEGG: ret:RHE_PC00203 hypothetical protein YP_002278570.1 PFAM: aldo/keto reductase; KEGG: ret:RHE_PC00204 probable oxidoreductase protein, aldo-keto aldolase family YP_002278571.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PC00205 probable transcriptional regulator protein, LysR family YP_002278572.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ret:RHE_PC00206 hypothetical protein YP_002278574.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002278576.1 KEGG: ret:RHE_PC00209 autoaggregation protein YP_002278577.1 KEGG: smd:Smed_3631 hypothetical protein YP_002278578.1 KEGG: bja:blr7618 hypothetical protein YP_002278579.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bid:Bind_3302 two component transcriptional regulator YP_002278580.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bid:Bind_3301 integral membrane sensor signal transduction histidine kinase YP_002278581.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0298 transcriptional regulator, TetR family YP_002278582.1 KEGG: bur:Bcep18194_B0299 hypothetical protein YP_002278583.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: ret:RHE_PC00222 probable oxidoreductase protein, short-chain dehydrogenase-reductase (SDR) family YP_002278584.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PC00223 probable ribitol 2-dehydrogenase protein YP_002278585.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PC00224 probable sugar ABC transporter, permease protein YP_002278586.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00225 probable sugar ABC transporter, ATP-binding protein YP_002278587.1 KEGG: ret:RHE_PC00226 sugar ABC transporter, substrate-binding protein YP_002278588.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PC00227 probable transcriptional regulator protein, AraC family YP_002278589.1 KEGG: ret:RHE_PC00228 trehalose-phosphatase protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase type 3 YP_002278590.1 KEGG: ret:RHE_PC00229 hypothetical protein YP_002278591.1 KEGG: ret:RHE_CH02734 hypothetical conserved membrane protein YP_002278592.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PF00218 probable ribose operon transcriptional regulator (repressor) protein, LacI family YP_002278593.1 KEGG: rec:RHECIAT_CH0004012 probable sugar ABC transporter, substrate-binding protein YP_002278594.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0004011 probable sugar ABC transporter, ATP-binding protein YP_002278595.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0004010 probable sugar ABC transporter, permease protein YP_002278596.1 PFAM: Integrase catalytic region; KEGG: sme:SMa2047 TRm24 transposase YP_002278598.1 KEGG: sme:SMa1697 hypothetical protein YP_002278599.1 KEGG: sme:SMa1702 hypothetical protein YP_002278600.1 KEGG: sme:SMa1586 SyrB2 regulator YP_002278601.1 KEGG: smd:Smed_5251 hypothetical protein YP_002278602.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bam:Bamb_4298 L-carnitine dehydratase/bile acid-inducible protein F YP_002278603.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sit:TM1040_3389 glucose-methanol-choline oxidoreductase YP_002278605.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_3411 transcriptional regulator, LysR family YP_002278606.1 PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_5858 major facilitator superfamily MFS_1 YP_002278607.1 PFAM: regulatory protein LacI; KEGG: sme:SMb20483 catabolite repressor protein YP_002278608.1 KEGG: smd:Smed_3639 ABC transporter periplasmic sugar-binding protein YP_002278609.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20485 sugar ABC transporter ATP-binding protein YP_002278610.1 PFAM: inner-membrane translocator; KEGG: sme:SMb20486 sugar ABC transporter permease protein YP_002278611.1 PFAM: inner-membrane translocator; KEGG: smd:Smed_3636 inner-membrane translocator YP_002278612.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMb20488 hypothetical protein YP_002278613.1 KEGG: rec:RHECIAT_PC0000126 hypothetical protein YP_002278614.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rec:RHECIAT_PC0000125 sensory box/GGDEF family protein YP_002278615.1 KEGG: atc:AGR_pAT_414 hypothetical protein YP_002278616.1 KEGG: atc:AGR_pAT_413 hypothetical protein YP_002278617.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mlr8217 ABC transporter, substrate-binding protein YP_002278618.1 PFAM: inner-membrane translocator; KEGG: mlo:mlr8216 ABC transporter, permease protein YP_002278619.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr8214 ABC transporter protein, ATP binding component YP_002278620.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mlr8213 transcription regulator YP_002278621.1 PFAM: RbsD or FucU transport; KEGG: bxe:Bxe_B0865 RbsD or FucU transport YP_002278622.1 PFAM: NUDIX hydrolase; KEGG: atc:AGR_pTi_215 hypothetical protein YP_002278623.1 KEGG: bbr:BB3530 phage-related hypothetical protein YP_002278624.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PA0000285 probable transcriptional regulator protein, AraC family YP_002278625.1 KEGG: rec:RHECIAT_PA0000286 hypothetical protein YP_002278626.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000722 probable amino acid ABC transporter, ATP-binding protein YP_002278627.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000723 probable amino acid ABC transporter, permease protein YP_002278628.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000724 probable amino acid ABC transporter, permease protein YP_002278629.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000725 probable amino acid ABC transporter, substrate-binding protein YP_002278630.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rec:RHECIAT_PC0000726 probable transcriptional regulator protein YP_002278631.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PC0000727 probable transcriptional regulator protein, LysR family YP_002278632.1 KEGG: rec:RHECIAT_PC0000728 nitrilotriacetate monooxygenase protein, component A YP_002278633.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_PC0000729 flavin reductase protein YP_002278634.1 PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_PC0000730 aminotransferase protein YP_002278635.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sme:SMc01967 agmatinase protein YP_002278636.1 KEGG: ret:RHE_PE00362 hypothetical protein YP_002278637.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_PA0000288 cellulose synthase (UDP-forming) protein YP_002278638.1 PFAM: protein of unknown function DUF1486; KEGG: bph:Bphy_5476 protein of unknown function DUF1486 YP_002278639.1 KEGG: ret:RHE_PF00044 hypothetical protein YP_002278640.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization YP_002278641.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rec:RHECIAT_PC0000964 ribulose bisphosphate carboxylaseoxygenase protein, large subunit YP_002278642.1 PFAM: type III effector Hrp-dependent outers; KEGG: ret:RHE_PF00041 hypothetical protein YP_002278643.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002278644.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_002278645.1 KEGG: rec:RHECIAT_PC0000968 hypothetical protein YP_002278646.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_PC0000969 probable ribose ABC transporter, substrate-binding protein YP_002278647.1 KEGG: rec:RHECIAT_PC0000970 hypothetical protein YP_002278648.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000971 probable ribose ABC transporter, ATP-binding protein YP_002278649.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000972 ribose ABC transporter, permease protein YP_002278650.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_PC0000973 probable oxidoreductase protein YP_002278651.1 KEGG: rec:RHECIAT_PC0000974 hypothetical protein YP_002278652.1 PFAM: Dak kinase; KEGG: rec:RHECIAT_PC0000975 probable dihydroxyacetone kinase protein, kinase domain YP_002278653.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: rec:RHECIAT_PC0000976 probable dihydroxyacetone kinase protein, phosphatase domain YP_002278654.1 PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr7000 ABC transporter, periplasmic binding-protein YP_002278655.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7001 ABC transporter, permease protein YP_002278656.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7002 ABC transporter, permease protein YP_002278657.1 KEGG: sus:Acid_6525 hypothetical protein YP_002278658.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mlr7004 ABC transporter, ATP-binding protein YP_002278659.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PB00153 N-acetyltransferase protein YP_002278660.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: rpc:RPC_4641 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_002278662.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: hne:HNE_1056 ISHne3, transposase YP_002278663.1 KEGG: rec:RHECIAT_PC0000026 hypothetical protein YP_002278664.1 PFAM: ribonuclease BN; KEGG: rec:RHECIAT_PC0000025 ribonuclease protein YP_002278665.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_002278666.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_PC0000023 hypothetical protein YP_002278667.1 PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: ret:RHE_PF00017 hypothetical protein YP_002278668.1 KEGG: rec:RHECIAT_PC0000019 acetyl-CoA acetyltransferase protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_002278669.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rec:RHECIAT_PC0000018 long-chain-fatty-acid--CoA ligase protein YP_002278670.1 PFAM: thioesterase superfamily protein; KEGG: rec:RHECIAT_PC0000017 probable thioesterase protein YP_002278671.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_PC0000016 probable zinc-dependent oxidoreductase protein YP_002278672.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: rec:RHECIAT_PC0000007 catalase protein YP_002278673.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PC0000006 hydrogen peroxide sensing transcriptional regulator protein, LysR family YP_002278674.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002278675.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002278676.1 KEGG: rec:RHECIAT_PC0000003 hypothetical protein YP_002278677.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: rec:RHECIAT_PC0000002 di-haem cytochrome c peroxidase protein YP_002278678.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_PC0000001 probable methyl accepting chemotaxis protein YP_002278679.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: ret:RHE_PF00572 plasmid partitioning protein RepBf1 YP_002278680.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: rec:RHECIAT_PC0000987 plasmid partitioning protein RepAc2 YP_002278681.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00570 probable sugar ABC transporter, ATP-binding protein YP_002278682.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rec:RHECIAT_PC0000985 xylose isomerase domain protein YP_002278683.1 PFAM: ROK family protein; regulatory protein MarR; KEGG: rec:RHECIAT_PC0000984 probable transcriptional regulator protein, ROK family YP_002278684.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000983 sugar ABC transporter, permease protein YP_002278685.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000982 sugar ABC transporter, permease protein YP_002278686.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000981 sugar ABC transporter, substrate-binding protein YP_002278687.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_PC0000980 probable oxidoreductase protein YP_002278688.1 KEGG: rec:RHECIAT_PC0000979 transcriptional regulator protein, ROK family YP_002278690.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bcz:BCZK2760 hypothetical protein YP_002278691.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: atc:AGR_pAT_466 hypothetical protein YP_002278692.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_pAT_467 hypothetical protein YP_002278693.1 SMART: AAA ATPase; KEGG: mlo:mlr8463 ABC transporter, ATP-binding protein YP_002278694.1 KEGG: smd:Smed_6023 transposase and inactivated derivatives-like protein YP_002278695.1 KEGG: sme:SMb20783 transposase of insertion sequence ISRm2011-2, orfA protein YP_002278696.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mrd:Mrad2831_6036 short-chain dehydrogenase/reductase SDR YP_002278697.1 PFAM: helix-turn-helix HxlR type; KEGG: mex:Mext_0266 helix-turn-helix HxlR type YP_002278698.1 PFAM: alpha/beta hydrolase fold; KEGG: fal:FRAAL1292 epoxide hydrolase YP_002278699.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: azc:AZC_3800 cobalamin synthesis protein YP_002278700.1 KEGG: azc:AZC_3799 hypothetical protein YP_002278701.1 PFAM: nitrile hydratase beta subunit; KEGG: azc:AZC_3798 nitrile hydratase beta subunit YP_002278702.1 KEGG: azc:AZC_3797 nitrile hydratase alpha subunit; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain YP_002278703.1 KEGG: azc:AZC_3796 transmembrane nitrile hydratase YP_002278704.1 TIGRFAM: cobalt transporter, subunit CbtB; PFAM: Cobalt transporter subunit CbtB putative; KEGG: atc:AGR_C_1611 hypothetical protein YP_002278705.1 TIGRFAM: cobalt transporter, subunit CbtA; PFAM: Cobalt transporter subunit CbtA putative; KEGG: atc:AGR_C_1613 hypothetical protein YP_002278706.1 KEGG: atc:AGR_C_1615 hypothetical protein YP_002278707.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: azc:AZC_3794 AraC-like protein YP_002278708.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bxe:Bxe_B1746 hypothetical protein YP_002278709.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_5196 threonine efflux protein YP_002278710.1 KEGG: bra:BRADO0421 adenylate cyclase YP_002278712.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: aba:Acid345_4773 excinuclease ABC, A subunit YP_002278713.1 KEGG: sus:Acid_0874 hypothetical protein YP_002278714.1 KEGG: mrd:Mrad2831_6254 hypothetical protein YP_002278715.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO1941 S-(hydroxymethyl)glutathione dehydrogenase (glutathione-dependent formaldehyde dehydrogenase) (fdh) YP_002278717.1 PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001817 hypothetical protein YP_002278718.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pde:Pden_4609 phospholipase D/transphosphatidylase YP_002278719.1 KEGG: atc:AGR_pAT_413 hypothetical protein YP_002278720.1 KEGG: smd:Smed_5155 hypothetical protein YP_002278721.1 PFAM: secretion protein HlyD family protein; KEGG: xau:Xaut_4935 efflux transporter, RND family, MFP subunit YP_002278722.1 KEGG: ret:RHE_CH01578 hypothetical protein YP_002278723.1 PFAM: protein of unknown function DUF983; KEGG: mes:Meso_2074 protein of unknown function DUF983 YP_002278724.1 KEGG: rpe:RPE_0640 hypothetical protein YP_002278725.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: atu:Atu5320 haloacid dehalogenase YP_002278726.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_PA0000013 two-component response regulator protein YP_002278727.1 PFAM: response regulator receiver; KEGG: rpb:RPB_4041 response regulator receiver domain protein YP_002278728.1 KEGG: sme:SMb21563 transcriptional regulator protein YP_002278730.1 KEGG: atc:AGR_pAT_694 hypothetical protein YP_002278731.1 PFAM: transglycosylase; KEGG: rec:RHECIAT_CH0001171 hypothetical conserved membrane protein YP_002278732.1 KEGG: rec:RHECIAT_PB0000199 hypothetical protein YP_002278735.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: ret:RHE_CH01009 probable polyhydroxybutyrate depolymerase protein YP_002278736.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: met:M446_1292 integral membrane sensor hybrid histidine kinase YP_002278738.1 PFAM: glycoside hydrolase 15-related; KEGG: psb:Psyr_2298 glycoside hydrolase, family 15 YP_002278739.1 PFAM: Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_2344 transcriptional regulator, AraC family YP_002278740.1 PFAM: glycoside hydrolase family 4; KEGG: rca:Rcas_1884 glycoside hydrolase family 4 YP_002278741.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: ecv:APECO1_1385 transcriptional regulator YP_002278742.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gox:GOX1475 N-acetylglucosamine kinase YP_002278743.1 PFAM: extracellular solute-binding protein family 1; KEGG: fma:FMG_0139 sugar ABC transporter substrate-binding protein YP_002278744.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tex:Teth514_0396 binding-protein-dependent transport systems inner membrane component YP_002278745.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_0871 binding-protein-dependent transport systems inner membrane component YP_002278746.1 PFAM: sugar isomerase (SIS); KEGG: lsp:Bsph_1258 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_002278747.1 KEGG: sme:SMb21373 sugar kinase protein; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ YP_002278748.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: xau:Xaut_0503 ABC transporter related YP_002278749.1 KEGG: vei:Veis_1128 SpoVT/AbrB-like protein YP_002278750.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002278751.1 PFAM: regulatory protein LuxR; KEGG: sme:SMc01630 transcription regulator protein YP_002278752.1 KEGG: sme:SMc01631 probable ATP-binding ABC transporter protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase YP_002278753.1 PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_2168 periplasmic binding ABC transporter protein YP_002278754.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01633 permease ABC transporter protein YP_002278755.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01634 permease ABC transporter protein YP_002278756.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_2171 short-chain dehydrogenase/reductase SDR YP_002278757.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_PC0000747 methyl-accepting chemotaxis protein YP_002278758.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppd:Ppro_0311 antibiotic biosynthesis monooxygenase YP_002278759.1 PFAM: inner-membrane translocator; KEGG: art:Arth_1914 inner-membrane translocator YP_002278760.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_1915 ABC transporter related YP_002278761.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: art:Arth_1911 oxidoreductase domain protein YP_002278762.1 KEGG: art:Arth_1916 ABC sugar transporter, periplasmic ligand binding protein YP_002278763.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: art:Arth_1912 xylose isomerase domain protein TIM barrel YP_002278764.1 PFAM: ROK family protein; KEGG: ace:Acel_0575 ROK family protein YP_002278765.1 KEGG: bxe:Bxe_B1396 ABC sugar transporter, periplasmic ligand binding protein YP_002278766.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: rec:RHECIAT_PC0000709 alpha-mannosidase protein YP_002278767.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_PF00474 probable transcriptional regulator protein, TetR family YP_002278768.1 PFAM: glycoside hydrolase family 3 domain protein; PA14 domain protein; KEGG: rec:RHECIAT_PC0000698 beta-glucosidase protein YP_002278769.1 PFAM: OmpA/MotB domain protein; KEGG: rec:RHECIAT_PC0000696 probable outer membrane lipoprotein YP_002278770.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_PF00470 hypothetical protein YP_002278771.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_CH0000678 N-acetylneuraminate lyase subunit protein YP_002278772.1 KEGG: rec:RHECIAT_CH0000679 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002278773.1 KEGG: ret:RHE_CH00605 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002278774.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_CH0000681 dihydrodipicolinate synthase protein YP_002278775.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0000682 oligopeptide ABC transporter, permease protein YP_002278776.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_CH00608 oligopeptide ABC transporter, permease protein YP_002278777.1 PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_CH00609 oligopeptide ABC transporter, substrate-binding protein YP_002278778.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_CH00610 probable transcriptional regulator protein YP_002278779.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rec:RHECIAT_PC0000694 ferrichrome-iron transporter, receptor protein YP_002278780.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PF00466 probable dehydrogenase protein YP_002278781.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_002278782.1 PFAM: periplasmic binding protein; KEGG: rec:RHECIAT_PC0000689 ferrichrome-iron ABC transporter, substrate-binding protein YP_002278783.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_PC0000688 vicibactin acetylase protein YP_002278784.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_PC0000687 RNA polymerase sigma factor protein YP_002278785.1 KEGG: rec:RHECIAT_PC0000685 efflux transporter inner membrane protein; TIGRFAM: MATE efflux family protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; multi antimicrobial extrusion protein MatE YP_002278786.1 KEGG: rec:RHECIAT_PC0000684 N6-hydroxylysine O-acetyltransferase protein YP_002278787.1 PFAM: MbtH domain protein; KEGG: rec:RHECIAT_PC0000683 polyketide synthase protein YP_002278788.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: rec:RHECIAT_PC0000682 vicibactin biosynthesis non-ribosomal peptide synthase protein YP_002278789.1 KEGG: ret:RHE_PF00456 L-lysine 6-monooxygenase (lysine N(6)-hydroxylase) protein YP_002278790.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: ret:RHE_PF00455 phosphopantetheinyl transferase protein YP_002278791.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_PC0000675 methyl accepting chemotaxis protein YP_002278792.1 PFAM: protein of unknown function DUF1109; KEGG: rec:RHECIAT_PC0000042 hypothetical protein YP_002278793.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_PC0000043 RNA polymerase sigma factor protein, ECF family YP_002278794.1 TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: rec:RHECIAT_PC0000044 hypothetical protein YP_002278795.1 PFAM: cytochrome B561; KEGG: rec:RHECIAT_PC0000045 transmembrane cytochrome b-type protein YP_002278796.1 PFAM: oxidoreductase molybdopterin binding; KEGG: rec:RHECIAT_PC0000046 molybdopterin-binding oxidoreductase protein YP_002278797.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000057 probable transcriptional regulator protein, GntR family YP_002278798.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ret:RHE_PF00068 probable C4-dicarboxylate ABC transporter, substrate-binding protein YP_002278799.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ret:RHE_PF00069 probable C4-dicarboxylate ABC transporter, permease protein YP_002278800.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rec:RHECIAT_PC0000060 probable C4-dicarboxylate ABC transporter, permease protein YP_002278801.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_PC0000061 probable zinc-dependent alcohol dehydrogenase protein YP_002278802.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PC0000062 oxidoreductase protein, NAD-binding site YP_002278803.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000063 dihydrodipicolinate synthetase protein YP_002278804.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000064 probable transcriptional regulator protein, GntR family YP_002278805.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rec:RHECIAT_PC0000066 two-component response regulator protein YP_002278806.1 PFAM: histidine kinase HAMP region domain protein; HWE histidine kinase; KEGG: rec:RHECIAT_PC0000067 two-component sensor histidine kinase protein YP_002278807.1 KEGG: rec:RHECIAT_PC0000070 hypothetical protein YP_002278808.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_PF00438 alanine catabolic operon transcriptional regulator protein, AsnC family YP_002278809.1 KEGG: ret:RHE_PF00437 alanine racemase protein; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002278810.1 catalyzes the oxidative deamination of D-amino acids YP_002278811.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PF00435 probable transcriptional regulator protein, AraC family YP_002278812.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_002278813.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_PF00433 transcriptional regulator protein, MerR family YP_002278814.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002278815.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PF00429 probable transcriptional regulator protein YP_002278816.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000652 ABC transporter, substrate-binding protein YP_002278817.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000651 probable amino acid ABC transporter, ATP-binding protein YP_002278818.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000650 amino acid ABC transporter, permease protein YP_002278819.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000649 probable amino acid ABC transporter, permease protein YP_002278820.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000648 dihydrodipicolinate synthetase protein YP_002278821.1 KEGG: rec:RHECIAT_PC0000647 proline racemase protein YP_002278822.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PC0000646 D-amino acid dehydrogenase protein YP_002278823.1 PFAM: Aldehyde dehydrogenase; KEGG: rec:RHECIAT_PC0000645 probable betaine-aldehyde dehydrogenase protein YP_002278824.1 PFAM: proline racemase; KEGG: rec:RHECIAT_PC0000644 probable proline racemase protein YP_002278825.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_PC0000643 3-oxoacyl-[acyl-carrier protein] reductase protein YP_002278826.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_PC0000642 dehydrogenase protein YP_002278827.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_CH02362 probable transcriptional regulator protein, LacI family YP_002278828.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH02361 probable sugar ABC transporter, substrate-binding protein YP_002278829.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH02360 probable sugar ABC transporter, permease protein YP_002278830.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll1002 ATP-binding protein of sugar ABC transporter YP_002278831.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_CH02358 probable hydroxypyruvate isomerase protein YP_002278832.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: ret:RHE_CH02357 myo-inositol dehydrogenase protein YP_002278833.1 KEGG: ret:RHE_CH02356 hypothetical protein YP_002278834.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr1006 rhizopine catabolism protein ModC YP_002278835.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000641 probable transcriptional regulator protein, GntR family YP_002278836.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: rec:RHECIAT_PC0000640 malate dehydrogenase protein YP_002278837.1 KEGG: ret:RHE_PF00426 hypothetical protein YP_002278838.1 KEGG: rec:RHECIAT_PC0000636 hypothetical protein YP_002278839.1 PFAM: TadE family protein; KEGG: rec:RHECIAT_PC0000635 hypothetical protein YP_002278840.1 KEGG: dme:Dmel_CG3047 Salivary gland secretion 1 YP_002278841.1 KEGG: rec:RHECIAT_PC0000633 ABC transporter, substrate-binding protein YP_002278843.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_3805 transcriptional regulator, LysR family YP_002278844.1 PFAM: extracellular solute-binding protein family 3; KEGG: gdi:GDI3829 transport protein YP_002278845.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gdi:GDI3829 transport protein YP_002278846.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_1588 general L-amino acid ABC transporter ATP-binding protein YP_002278847.1 PFAM: beta-lactamase domain protein; KEGG: mlo:mll5024 hypothetical protein YP_002278848.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_2025 agmatinase YP_002278849.1 KEGG: atc:AGR_C_4953 probable hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002278850.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: amt:Amet_1547 transcriptional regulator, GntR family YP_002278851.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan YP_002278852.1 KEGG: rec:RHECIAT_PB0000125 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002278853.1 KEGG: ret:RHE_PE00394 hypothetical protein YP_002278854.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0001648 hypothetical protein YP_002278855.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002278856.1 KEGG: ret:RHE_PF00421 amicyanin YP_002278857.1 KEGG: rec:RHECIAT_PC0000612 hypothetical protein YP_002278858.1 KEGG: rec:RHECIAT_PC0000611 hypothetical protein YP_002278859.1 PFAM: Aldehyde dehydrogenase; KEGG: rec:RHECIAT_PC0000932 salicylaldehyde dehydrogenase protein YP_002278860.1 catalyzes the formation of 5-alpha-androstane-3,17-dione from androsterone; Acts on other 3-alpha-hydroxysteroids and on 9-, 11- and 15-hydroxyprostaglandin. YP_002278861.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000930 branched-chain amino acid ABC transporter, permease protein YP_002278862.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000929 branched-chain amino acid ABC transporter, permease protein YP_002278863.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000928 branched-chain amino acid ABC transporter, ATP-binding protein YP_002278864.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000927 branched-chain amino acid ABC transporter, ATP-binding protein YP_002278865.1 KEGG: rec:RHECIAT_PC0000926 branched-chain amino acid ABC transporter, substrate-binding protein YP_002278866.1 PFAM: Aldehyde dehydrogenase; KEGG: rec:RHECIAT_PC0000925 short-chain dehydrogenase protein YP_002278867.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PC0000924 probable transcriptional regulator protein, AraC family YP_002278869.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: ret:RHE_CH02958 sulfite oxidase protein YP_002278870.1 KEGG: rec:RHECIAT_PA0000123 hypothetical protein YP_002278871.1 SMART: regulatory protein ArsR; KEGG: ret:RHE_PE00138 transcriptional regulator protein, ArsR family YP_002278872.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_PA0000125 hypothetical protein YP_002278873.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002087 adenylate/guanylate cyclase protein YP_002278874.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_PC0000923 probable transcriptional regulator protein, MarR family YP_002278875.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rec:RHECIAT_PC0000922 feruloyl-CoA synthetase protein YP_002278876.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA YP_002278877.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_PC0000920 aryl-alcohol dehydrogenase protein YP_002278878.1 PFAM: Aldehyde dehydrogenase; KEGG: rec:RHECIAT_PC0000919 coniferyl-aldehyde dehydrogenase protein YP_002278879.1 KEGG: ret:RHE_PF00417 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; 5TM Receptors of the LytS-YhcK type transmembrane region; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_002278880.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ret:RHE_PF00416 probable formate dehydrogenase alpha chain protein YP_002278881.1 KEGG: ret:RHE_PF00415 hypothetical protein YP_002278882.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PC0000597 probable transcriptional regulator protein, AraC family YP_002278883.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000594 probable glycine betaine/L-proline ABC transporter, ATP-binding protein YP_002278884.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00411 probable amino acid ABC transporter, permease protein YP_002278885.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rec:RHECIAT_PC0000592 probable glycine betaine/L-proline ABC transporter, substrate-binding protein YP_002278886.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: ret:RHE_PF00409 pyrroline-5-carboxylate reductase protein YP_002278887.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_PC0000590 probable transcriptional regulator protein, TetR family YP_002278888.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_PC0000589 2,4-dienoyl-CoA reductase (NADPH) protein YP_002278889.1 KEGG: rec:RHECIAT_PC0000588 transcriptional regulator protein YP_002278890.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rec:RHECIAT_PC0000587 electron transport flavoprotein, beta subunit YP_002278891.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ret:RHE_PF00404 electron-transport flavoprotein, alpha-subunit YP_002278892.1 KEGG: rec:RHECIAT_PC0000585 hypothetical protein YP_002278893.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002337 formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein YP_002278894.1 KEGG: rec:RHECIAT_PC0000583 probable S-formylglutathione hydrolase protein; TIGRFAM: S-formylglutathione hydrolase; PFAM: esterase YP_002278895.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione YP_002278896.1 KEGG: atc:AGR_pAT_644 hypothetical protein YP_002278897.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rec:RHECIAT_PC0000917 plasmid stabilization protein YP_002278898.1 KEGG: rec:RHECIAT_PC0000916 hypothetical protein YP_002278899.1 KEGG: rec:RHECIAT_PC0000915 hypothetical protein YP_002278900.1 KEGG: ret:RHE_PD00141 hypothetical protein YP_002278901.1 KEGG: ret:RHE_PD00142 hypothetical protein YP_002278902.1 KEGG: rec:RHECIAT_PC0000911 transport secretion system IV protein, VirB1 YP_002278903.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PD00179 nopaline ABC transporter, permease protein YP_002278904.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000872 nopaline ABC transporter, permease protein YP_002278905.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PB0000198 nopaline catabolism transcriptional regulator protein, LysR family YP_002278908.1 KEGG: nwi:Nwi_0259 hypothetical protein YP_002278909.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sun:SUN_2438 cytosine-specific methyltransferase YP_002278910.1 KEGG: sun:SUN_2437 hypothetical protein YP_002278911.1 KEGG: gdi:GDI1087 hypothetical protein YP_002278912.1 KEGG: gdi:GDI1088 hypothetical protein YP_002278913.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_002278914.1 KEGG: sbo:SBO_0755 phage-related protein YP_002278915.1 SMART: AAA ATPase; KEGG: sbo:SBO_0754 phage-related protein YP_002278916.1 KEGG: ade:Adeh_1553 enzyme of poly-gamma-glutamate biosynthesis (capsule formation)-like YP_002278917.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_CH0002058 amino acid ABC transporter, substrate-binding protein YP_002278918.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2099 binding-protein-dependent transport systems inner membrane component YP_002278919.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_2100 polar amino acid ABC transporter, inner membrane protein YP_002278920.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smd:Smed_2101 ABC transporter related YP_002278921.1 KEGG: aha:AHA_3828 L-asparaginase, type II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase YP_002278922.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: jan:Jann_3239 hypothetical protein YP_002278923.1 PFAM: amidohydrolase; KEGG: ter:Tery_1855 amidohydrolase YP_002278924.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bja:bll3094 transcriptional regulatory protein YP_002278925.1 PFAM: aminotransferase class V; KEGG: met:M446_6148 aminotransferase class V YP_002278926.1 catalyzes the formation of fumarate from aspartate YP_002278927.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: oan:Oant_0144 alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase YP_002278928.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione YP_002278929.1 PFAM: aminotransferase class-III; KEGG: atc:AGR_L_242 hypothetical protein YP_002278930.1 PFAM: Aldehyde dehydrogenase; KEGG: ppu:PP_0665 glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent,putative YP_002278931.1 KEGG: sal:Sala_0113 hypothetical protein YP_002278932.1 KEGG: bja:bll1981 hypothetical protein YP_002278933.1 KEGG: mlo:mlr5819 hypothetical protein YP_002278934.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bja:bll1977 hypothetical protein YP_002278935.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0004273 rhizopine ABC transporter, substrate-binding protein YP_002278936.1 KEGG: abu:Abu_2016 hypothetical protein YP_002278937.1 PFAM: regulatory protein GntR HTH; regulatory protein DeoR; KEGG: acr:Acry_1144 transcriptional regulator, DeoR family YP_002278938.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: acr:Acry_0463 short-chain dehydrogenase/reductase SDR YP_002278939.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: lch:Lcho_0892 ABC transporter-related protein YP_002278940.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3852 binding-protein-dependent transport systems inner membrane component YP_002278941.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3853 binding-protein-dependent transport systems inner membrane component YP_002278942.1 PFAM: extracellular solute-binding protein family 1; KEGG: bur:Bcep18194_A5926 ABC sugar transporter, periplasmic ligand binding protein YP_002278943.1 KEGG: mtp:Mthe_1214 ADP-specific phosphofructokinase YP_002278944.1 KEGG: acr:Acry_0687 hypothetical protein YP_002278945.1 PFAM: Integrase catalytic region; KEGG: atc:AGR_L_547 hypothetical protein YP_002278946.1 PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PD00313 probable insertion sequence transposase protein YP_002278947.1 PFAM: regulatory protein DeoR; KEGG: acr:Acry_1144 transcriptional regulator, DeoR family YP_002278948.1 PFAM: extracellular solute-binding protein family 1; KEGG: blj:BLD_1301 MalE-type ABC sugar transport system periplasmic component YP_002278949.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: esi:Exig_0373 binding-protein-dependent transport systems inner membrane component YP_002278950.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmo:Pmob_0029 binding-protein-dependent transport systems inner membrane component YP_002278951.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pfo:PflO1_2637 ABC transporter-like YP_002278952.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpd:BURPS668_1913 short chain dehydrogenase YP_002278953.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_5529 transcriptional regulator, LysR family YP_002278954.1 KEGG: bja:bll6828 ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_002278955.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1510 HAD-superfamily hydrolase, subfamily IA, variant2 YP_002278956.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:bll6826 oxidoreductase YP_002278957.1 PFAM: extracellular solute-binding protein family 1; KEGG: bja:bll6825 ABC transporter substrate-binding protein YP_002278958.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bph:Bphy_6579 binding-protein-dependent transport systems inner membrane component YP_002278959.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6823 ABC transporter permease protein YP_002278960.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bph:Bphy_6576 glucose-methanol-choline oxidoreductase YP_002278961.1 PFAM: Aldehyde dehydrogenase; KEGG: ret:RHE_PF00359 probable aldehyde dehydrogenase protein YP_002278962.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; KEGG: pde:Pden_4969 succinic semialdehyde dehydrogenase YP_002278963.1 TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: nar:Saro_2935 tartrate dehydrogenase YP_002278964.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: atc:AGR_L_2844 hypothetical protein PA2762 YP_002278965.1 PFAM: regulatory protein LuxR; KEGG: smd:Smed_2166 response regulator receiver protein YP_002278966.1 KEGG: swi:Swit_1672 hypothetical protein YP_002278967.1 PFAM: NMT1/THI5 like domain protein; KEGG: mlo:mlr7112 hypothetical protein YP_002278968.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: gdi:GDI2474 transcriptional regulator, GntR family YP_002278969.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7114 ABC transporter, permease protein YP_002278970.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr7115 ABC-transport protein, ATP-binding component YP_002278971.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002278972.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: npu:Npun_R2669 oxidoreductase, molybdopterin binding YP_002278973.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpa:RPA1563 nitrilase YP_002278974.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dde:Dde_2582 endoribonuclease L-PSP YP_002278975.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpa:RPA1562 transcriptional regulator, LysR family YP_002278976.1 PFAM: aminotransferase class V; KEGG: smd:Smed_1213 aminotransferase class V YP_002278977.1 KEGG: rpd:RPD_1073 nitrogenase reductase YP_002278978.1 CcoN; FixN YP_002278979.1 CcoO; FixO YP_002278980.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: ret:RHE_PF00505 cytochrome c oxidase, FixQ chain protein YP_002278981.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: ret:RHE_PF00504 cytochrome c oxidase, FixP chain (cbb3-type subunit III) protein YP_002278983.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ret:RHE_PF00503 ferrodoxin oxidase protein YP_002278984.1 PFAM: FixH family protein; KEGG: ret:RHE_PF00502 cation pump membrane (nitrogen fixation)protein YP_002278985.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ret:RHE_PF00501 cation transport ATPase protein YP_002278986.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: ret:RHE_PF00500 membrane protein precursor YP_002278987.1 PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_PF00499 probable transcriptional regulator (activator) protein, CRP family YP_002278988.1 PFAM: acyltransferase; KEGG: msm:MSMEG_0390 acyltransferase YP_002278989.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMa0757 NodD2 nod box-dependent transcription activator YP_002278990.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: ret:RHE_CH00404 RNA polymerase factor sigma-54 YP_002278991.1 PFAM: MaoC domain protein dehydratase; KEGG: sme:SMa0874 NodN dehydratase YP_002278992.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: sme:SMc00231 D-fructose-6-phosphate amidotransferase YP_002278993.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: smd:Smed_6263 maltose O-acetyltransferase YP_002278994.1 PFAM: Beta-ketoacyl synthase; KEGG: smd:Smed_6194 beta-ketoacyl synthase YP_002278995.1 PFAM: phosphopantetheine-binding; KEGG: sme:SMa0852 NodF acyl carrier protein YP_002278996.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMa0870 NodD1 nod-box dependent transcriptional activator YP_002278997.1 catalyzes the transfer of a fatty acyl group onto Nod factor, beta-(1,4)-N-acetylglucosamine oligosaccharide YP_002278998.1 PFAM: polysaccharide deacetylase; KEGG: sme:SMa0868 NodB chitooligosaccharide deacetylase YP_002278999.1 PFAM: glycosyl transferase family 2; chitin synthase; KEGG: smd:Smed_6186 glycosyl transferase family 2 YP_002279000.1 ATP-binding subunit; with NodJ is involved in the export of lipo-chitin oligosaccharide; involved in nodulation induction YP_002279001.1 TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: smd:Smed_6188 ABC-2 type transporter, NodJ family YP_002279002.1 TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mlo:msl5852 hypothetical protein YP_002279003.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: smd:Smed_6234 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002279004.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; KEGG: sme:SMa0814 NifB FeMo cofactor biosynthesis protein YP_002279005.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: smd:Smed_6232 transcriptional regulator, NifA, fis family YP_002279006.1 PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll5860 nitrogen fixation protein,FixC YP_002279007.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: smd:Smed_6229 electron transfer flavoprotein alpha/beta-subunit YP_002279008.1 KEGG: rpd:RPD_2800 hypothetical protein YP_002279009.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rec:RHECIAT_PB0000268 electron transfer flavoprotein, beta subunit YP_002279010.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis YP_002279011.1 KEGG: ret:RHE_PD00201 nitrogenase, iron-molybdenum alpha chain protein; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_002279012.1 KEGG: ret:RHE_PD00306 nitrogenase, iron-molybdenum beta chain protein; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_002279013.1 KEGG: mlo:mlr5908 nitrogenase molybdenum-cofactor synthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_002279014.1 KEGG: mlo:mlr5909 nitrogenase molybdenum-iron protein beta chain, NifN; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1 YP_002279015.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_3562 transcriptional regulator, AsnC family YP_002279016.1 PFAM: fumarate lyase; KEGG: mmw:Mmwyl1_1905 fumarate lyase YP_002279017.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: met:M446_0697 dihydrodipicolinate synthase YP_002279018.1 PFAM: Aldehyde dehydrogenase; KEGG: ppu:PP_0665 glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent,putative YP_002279019.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002279020.1 PFAM: regulatory protein LysR; KEGG: bmn:BMA10247_A0036 chromosome replication initiation inhibitor protein YP_002279021.1 PFAM: small multidrug resistance protein; KEGG: dac:Daci_0685 small multidrug resistance protein YP_002279022.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ckl:CKL_1632 MetB2 YP_002279023.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_C_4292 transport system permease ABC transporter protein YP_002279024.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_C_4293 histidine transport system permease protein YP_002279025.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00160 probable amino acid ABC transporter, substrate-binding protein YP_002279026.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00159 probable amino acid ABC transporter, ATP-binding protein YP_002279027.1 PFAM: B3/4 domain protein; KEGG: mlo:mll6378 hypothetical protein YP_002279028.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: rso:RS04780 transcription regulator protein YP_002279029.1 KEGG: sme:SMc02256 hippurate hydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002279030.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sth:STH832 cystathionine gamma-lyase YP_002279031.1 PFAM: Negative transcriptional regulator; KEGG: mlo:mlr6176 transcriptional regulator YP_002279032.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mlo:mlr6174 transcriptional regulator YP_002279033.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: smd:Smed_4166 lysine exporter protein (LysE/YggA) YP_002279034.1 PFAM: dihydrodipicolinate synthetase; KEGG: sme:SMb21508 dihydrodipicolinate synthetase protein YP_002279035.1 KEGG: cak:Caul_5329 hypothetical protein YP_002279038.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mms:mma_1036 short-chain dehydrogenase/reductase SDR YP_002279039.1 PFAM: NmrA family protein; KEGG: sma:SAV730 hypothetical protein YP_002279040.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_C6761 transcriptional regulator, AraC family YP_002279041.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cak:Caul_0434 alcohol dehydrogenase zinc-binding domain protein YP_002279042.1 KEGG: cak:Caul_0433 hypothetical protein YP_002279043.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator YP_002279044.1 KEGG: atc:AGR_L_31 hypothetical protein YP_002279045.1 PFAM: transport-associated; KEGG: rec:RHECIAT_PC0000714 hypothetical protein YP_002279046.1 PFAM: transport-associated; KEGG: ret:RHE_CH03187 hypothetical protein YP_002279047.1 PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0001152 beta-lactamase protein YP_002279048.1 KEGG: ret:RHE_CH01579 hypothetical protein YP_002279050.1 KEGG: ret:RHE_CH01328 hypothetical protein YP_002279051.1 KEGG: hsa:6493 single-minded homolog 2 (Drosophila) YP_002279052.1 KEGG: nha:Nham_2986 hypothetical protein YP_002279053.1 KEGG: smd:Smed_5626 hypothetical protein YP_002279054.1 KEGG: rec:RHECIAT_CH0002048 hypothetical protein YP_002279055.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: smd:Smed_4880 protein of unknown function DUF900 hydrolase family protein YP_002279056.1 KEGG: smd:Smed_4881 hypothetical protein YP_002279057.1 KEGG: cps:CPS_1445 hypothetical protein YP_002279058.1 KEGG: rba:RB6365 hypothetical protein YP_002279059.1 KEGG: met:M446_1543 hypothetical protein YP_002279060.1 KEGG: syx:SynWH7803_2354 hypothetical protein YP_002279061.1 PFAM: HupE/UreJ protein; KEGG: xau:Xaut_2123 HupE/UreJ protein YP_002279062.1 KEGG: xau:Xaut_2124 hypothetical protein YP_002279063.1 KEGG: smd:Smed_4883 hypothetical protein YP_002279064.1 KEGG: azc:AZC_0779 cysteine rich repeat domain protein YP_002279065.1 PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_1992 OmpA/MotB domain protein YP_002279066.1 KEGG: azc:AZC_3686 hypothetical protein YP_002279067.1 KEGG: bja:bll2661 hypothetical protein YP_002279068.1 PFAM: sulfatase; KEGG: mlo:mll5471 arylsulfatase YP_002279069.1 PFAM: protein of unknown function DUF323; KEGG: met:M446_1197 protein of unknown function DUF323 YP_002279070.1 KEGG: rec:RHECIAT_PB0000199 hypothetical protein YP_002279072.1 PFAM: PilT protein domain protein; KEGG: rec:RHECIAT_PA0000111 hypothetical protein YP_002279073.1 KEGG: mbb:BCG_1173 hypothetical protein YP_002279074.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: atc:AGR_pAT_592 hypothetical protein YP_002279075.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_pAT_594 hypothetical protein YP_002279076.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_595 MidB, amino acid transport system permease proetin YP_002279077.1 PFAM: extracellular solute-binding protein family 3; KEGG: atc:AGR_pAT_596 amino acid transport system substrate-binding proetin YP_002279078.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: atc:AGR_pAT_598 polyamine transport protein PotA YP_002279079.1 PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_pAT_599 probable mikimopine transporter gene similar to PotD gene YP_002279080.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_600 probable mikimopine transporter gene similar to MotC gene YP_002279081.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_602 probable permease of ABC transporter YP_002279082.1 PFAM: peptidase M24; KEGG: atc:AGR_pAT_604 hypothetical protein YP_002279083.1 KEGG: atc:AGR_pAT_605 hypothetical protein YP_002279084.1 KEGG: ret:RHE_CH03187 hypothetical protein YP_002279085.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; KEGG: ret:RHE_CH01584 sensory box/GGDEF family protein YP_002279087.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: rec:RHECIAT_CH0003324 hypothetical protein YP_002279088.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: rec:RHECIAT_CH0003323 hypothetical protein YP_002279089.1 KEGG: rec:RHECIAT_CH0003322 hypothetical protein YP_002279090.1 KEGG: rec:RHECIAT_PB0000068 hypothetical protein YP_002279091.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH01048 probable 3-oxoacyl-[acyl-carrier protein] reductase protein YP_002279092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PF00142 short chain dehydrogenase YP_002279094.1 KEGG: rec:RHECIAT_PC0000734 hypothetical protein YP_002279095.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ret:RHE_PE00173 pyridoxine 5'-phosphate oxidase protein YP_002279096.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PE00174 alpha/beta hydrolase protein YP_002279097.1 KEGG: ret:RHE_PE00175 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002279098.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ret:RHE_PE00176 probable two-component response regulator protein YP_002279099.1 PFAM: protein of unknown function DUF159; KEGG: ret:RHE_PF00147 hypothetical protein YP_002279100.1 PFAM: protein of unknown function DUF159; KEGG: ret:RHE_PF00148 hypothetical protein YP_002279101.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002279103.1 KEGG: ret:RHE_PF00150 hypothetical protein YP_002279104.1 KEGG: ret:RHE_PF00151 nucleotidyltransferase protein YP_002279105.1 KEGG: ret:RHE_PF00152 DNA polymerase III alpha subunit protein; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_002279106.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: atc:AGR_L_1309 hypothetical protein YP_002279107.1 KEGG: swi:Swit_0813 hypothetical protein YP_002279108.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_L_1315 hypothetical protein YP_002279109.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eca:ECA1207 probable short chain dehydrogenase YP_002279110.1 PFAM: regulatory protein MarR; helix-turn-helix HxlR type; KEGG: bid:Bind_1015 transcriptional regulator, HxlR family YP_002279111.1 PFAM: regulatory protein TetR; KEGG: msm:MSMEG_5597 transcriptional regulator, TetR family protein YP_002279112.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_L_3469 hypothetical protein YP_002279113.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_3471 hypothetical protein YP_002279114.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cak:Caul_5076 NAD-dependent epimerase/dehydratase YP_002279115.1 PFAM: regulatory protein MarR; KEGG: cak:Caul_5077 transcriptional regulator, MarR family YP_002279117.1 KEGG: ret:RHE_PC00207 hypothetical protein YP_002279118.1 KEGG: bid:Bind_3262 hypothetical protein YP_002279119.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: psp:PSPPH_1480 sensor histidine kinase YP_002279120.1 PFAM: HicB family protein; KEGG: sme:SMa1990 hypothetical protein YP_002279121.1 KEGG: rsq:Rsph17025_4181 hypothetical protein YP_002279122.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bur:Bcep18194_C7710 transcriptional regulator, GntR family YP_002279123.1 PFAM: protein of unknown function DUF1127; KEGG: bja:bll5859 hypothetical protein YP_002279124.1 PFAM: protein of unknown function DUF81; KEGG: bcm:Bcenmc03_6641 protein of unknown function DUF81 YP_002279125.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr0173 hypothetical protein YP_002279126.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMb20214 oxidoreductase protein YP_002279127.1 PFAM: alpha/beta hydrolase fold; epoxide hydrolase domain protein; KEGG: smd:Smed_5519 epoxide hydrolase domain protein YP_002279128.1 PFAM: transcriptional regulator domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00532 probable transcriptional regulator protein, LuxR family YP_002279129.1 PFAM: helix-turn-helix HxlR type; KEGG: pfo:PflO1_3271 transcriptional regulator, HxlR family YP_002279130.1 KEGG: ret:RHE_PF00543 hypothetical protein YP_002279131.1 PFAM: isochorismatase hydrolase; KEGG: pfo:PflO1_3272 isochorismatase hydrolase YP_002279132.1 PFAM: alpha/beta hydrolase fold; epoxide hydrolase domain protein; KEGG: bja:bll3418 epoxide hydrolase 1 YP_002279133.1 PFAM: heat shock protein Hsp20; KEGG: oan:Oant_4635 heat shock protein HSP20 YP_002279134.1 KEGG: ret:RHE_CH01243 hypothetical protein YP_002279135.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: rec:RHECIAT_CH0001329 amylo-alpha-1,6-glucosidase protein YP_002279136.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0001328 glycosyltransferase protein YP_002279137.1 KEGG: ret:RHE_CH01240 hypothetical protein YP_002279139.1 PFAM: protein of unknown function DUF982; KEGG: ret:RHE_PE00253 hypothetical protein YP_002279140.1 KEGG: rec:RHECIAT_PC0000756 hypothetical protein YP_002279141.1 KEGG: rpe:RPE_3950 insertion sequence transposase protein YP_002279142.1 KEGG: mlo:mll8067 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002279144.1 KEGG: npu:Npun_R0134 hypothetical protein YP_002279145.1 KEGG: npu:Npun_R0135 hypothetical protein YP_002279146.1 KEGG: rec:RHECIAT_CH0000665 Mn2+/Fe2+ transporter protein YP_002279147.1 PFAM: cyclic nucleotide-binding; Ion transport protein; Ion transport 2 domain protein; KEGG: ret:RHE_CH03180 probable potassium channel protein YP_002279148.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_002279149.1 PFAM: heat shock protein DnaJ domain protein; KEGG: atc:AGR_pAT_763 hypothetical protein YP_002279150.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002279151.1 PFAM: Secreted repeat of unknown function; KEGG: oan:Oant_3396 secreted repeat-containing protein YP_002279152.1 KEGG: dre:100149111 hypothetical protein LOC100149111; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002279153.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_0039 ABC transporter related YP_002279154.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_0040 polar amino acid ABC transporter, inner membrane protein YP_002279155.1 SMART: extracellular solute-binding protein family 3; KEGG: mes:Meso_0041 extracellular solute-binding protein, family 3 YP_002279156.1 KEGG: vei:Veis_2840 hypothetical protein YP_002279157.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mes:Meso_0044 transcriptional regulator, GntR family YP_002279158.1 PFAM: protein of unknown function DUF982; KEGG: atu:Atu5053 hypothetical protein YP_002279159.1 PFAM: heat shock protein Hsp20; KEGG: atc:AGR_pAT_69 small heat shock protein HspB YP_002279160.1 PFAM: response regulator receiver; KEGG: rpe:RPE_1275 response regulator receiver protein YP_002279161.1 KEGG: rec:RHECIAT_PC0000135 hypothetical protein YP_002279162.1 KEGG: rec:RHECIAT_PC0000311 hypothetical protein YP_002279163.1 KEGG: rec:RHECIAT_PC0000288 diheme cytochrome c-type signal-peptide protein YP_002279164.1 PFAM: response regulator receiver; KEGG: ret:RHE_PF00072 probable two-component response regulator protein YP_002279165.1 PFAM: response regulator receiver; KEGG: ret:RHE_PF00074 two-component response regulator protein YP_002279166.1 PFAM: CheB methylesterase; KEGG: ret:RHE_PF00075 protein-glutamate methylesterase protein YP_002279167.1 KEGG: ret:RHE_PF00076 chemotaxis methyltransferase protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002279168.1 PFAM: response regulator receiver; KEGG: ret:RHE_PF00077 two-component response regulator protein YP_002279169.1 KEGG: met:M446_7062 hypothetical protein YP_002279170.1 KEGG: ret:RHE_PB00061 cytochrome c class I protein YP_002279171.1 KEGG: rec:RHECIAT_PC0000286 hypothetical protein YP_002279172.1 PFAM: cytochrome c oxidase subunit III; KEGG: rec:RHECIAT_PC0000285 cytochrome c oxidase protein, subunit III YP_002279173.1 KEGG: ret:RHE_PB00064 probable cytochrome c oxidase subunit I protein; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_002279174.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: ret:RHE_PB00065 probable cytochrome c oxidase subunit II protein YP_002279175.1 PFAM: cytochrome c class I; KEGG: rec:RHECIAT_PC0000282 probable cytochrome c oxidase protein, subunit III YP_002279176.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rec:RHECIAT_PC0000281 formate dehydrogenase protein YP_002279177.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_PC0000039 probable RNA polymerase sigma-E factor protein (sigma-24), ECF family YP_002279178.1 PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_PC0000461 hydrolase protein YP_002279179.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMa0187 short chain alcohol dehydrogenase-related dehydrogenase YP_002279181.1 KEGG: ret:RHE_CH01231 hypothetical protein YP_002279182.1 KEGG: ret:RHE_CH02072 hypothetical protein YP_002279183.1 KEGG: rsq:Rsph17025_4126 hypothetical protein YP_002279184.1 PFAM: phospholipase/Carboxylesterase; KEGG: aci:ACIAD1035 conserved hypothetical protein; esterase YP_002279186.1 KEGG: smd:Smed_5308 hypothetical protein YP_002279187.1 KEGG: rec:RHECIAT_CH0003322 hypothetical protein YP_002279188.1 KEGG: rec:RHECIAT_PC0000143 nutrient deprivation-induced protein YP_002279189.1 KEGG: ret:RHE_CH01083 nutrient deprivation-induced protein YP_002279190.1 KEGG: rec:RHECIAT_PC0000145 nutrient deprivation-induced protein YP_002279191.1 KEGG: rec:RHECIAT_PB0000073 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002279192.1 KEGG: cak:Caul_3297 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002279193.1 KEGG: rec:RHECIAT_PC0000714 hypothetical protein YP_002279194.1 PFAM: protein of unknown function DUF1236; KEGG: smd:Smed_4377 protein of unknown function DUF1236 YP_002279195.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03200 probable glycosyltransferase protein YP_002279197.1 KEGG: rec:RHECIAT_PC0000147 hypothetical protein YP_002279199.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000580 probable transcriptional regulator protein, GntR family YP_002279200.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000579 dihydrodipicolinate synthase protein YP_002279201.1 PFAM: Aldehyde dehydrogenase; KEGG: rec:RHECIAT_PC0000578 aldehyde dehydrogenase protein YP_002279202.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PC0000577 oxidoreductase protein YP_002279203.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ret:RHE_PF00395 probable glycine betaine/L-proline ABC transporter, substrate-binding protein YP_002279204.1 KEGG: rec:RHECIAT_PC0000575 probable glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_002279205.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000574 probable glycine betaine/L-proline ABC transporter, permease protein YP_002279206.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00392 probable glycine betaine/L-proline ABC transporter, permease protein YP_002279207.1 PFAM: proline racemase; KEGG: rec:RHECIAT_PC0000572 proline racemase protein YP_002279208.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: ret:RHE_PF00390 probable transcriptional regulator protein, AraC family YP_002279209.1 PFAM: peptidase M24; KEGG: rec:RHECIAT_PC0000570 proline dipeptidase protein YP_002279210.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: rec:RHECIAT_PC0000569 ferredoxin--NAD(+) reductase protein YP_002279211.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rec:RHECIAT_PC0000568 Rieske [2Fe-2S] dioxygenase protein YP_002279212.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PC0000567 transcriptional regulator protein, LysR family YP_002279213.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: ret:RHE_PF00386 hypothetical protein YP_002279215.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_PC0000565 proline dehydrogenase transcriptional activator protein YP_002279216.1 KEGG: rec:RHECIAT_PC0000564 hypothetical protein YP_002279217.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain YP_002279218.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_PC0000562 methyl-accepting chemotaxis protein YP_002279219.1 KEGG: ret:RHE_PF00355 hypothetical protein YP_002279220.1 PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_PF00356 D-amino acid oxidase protein YP_002279221.1 PFAM: Aldehyde dehydrogenase; KEGG: ret:RHE_PF00359 probable aldehyde dehydrogenase protein YP_002279222.1 PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_PF00361 probable deaminase protein YP_002279223.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00354 probable oligopeptide ABC transporter, ATP-binding protein YP_002279224.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000558 probable oligopeptide ABC transporter, permease protein YP_002279225.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000557 probable oligopeptide ABC transporter, permease protein YP_002279226.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000556 probable oligopeptide ABC transporter, substrate-binding protein YP_002279227.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); KEGG: rec:RHECIAT_PC0000555 2-haloacid dehalogenase protein YP_002279228.1 PFAM: type III effector Hrp-dependent outers; KEGG: rec:RHECIAT_PC0000552 hypothetical protein YP_002279229.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ret:RHE_PF00346 hydroxypyruvate isomerase protein YP_002279230.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rec:RHECIAT_PC0000550 3-hydroxyisobutyrate dehydrogenase protein YP_002279231.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_PC0000548 probable transcriptional regulator protein, LacI family YP_002279232.1 PFAM: class II aldolase/adducin family protein; KEGG: rec:RHECIAT_PC0000547 aldolase protein YP_002279233.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002279234.1 KEGG: rec:RHECIAT_PC0000537 hypothetical protein YP_002279235.1 KEGG: rec:RHECIAT_PC0000536 hypothetical protein YP_002279236.1 KEGG: ret:RHE_PF00333 hypothetical protein YP_002279237.1 KEGG: oan:Oant_3938 transcriptional regulator, MarR family YP_002279238.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PC0000534 probable transcriptional regulator protein, LysR family YP_002279239.1 PFAM: CBS domain containing protein; HPP family protein?; KEGG: rec:RHECIAT_PC0000533 hypothetical conserved membrane protein YP_002279240.1 KEGG: sme:SMa1192 hypothetical protein YP_002279241.1 PFAM: FAD linked oxidase domain protein; KEGG: rec:RHECIAT_PC0000532 probable FAD-dependent oxidoreductase protein YP_002279242.1 KEGG: rec:RHECIAT_PC0000528 hypothetical protein YP_002279243.1 KEGG: ret:RHE_PF00327 hypothetical protein YP_002279244.1 KEGG: ret:RHE_PF00326 hypothetical protein YP_002279245.1 KEGG: ret:RHE_PF00325 hypothetical protein YP_002279247.1 KEGG: rec:RHECIAT_CH0001117 hypothetical protein YP_002279248.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: smd:Smed_6498 prevent-host-death family protein YP_002279249.1 KEGG: bov:BOV_A0496 hypothetical protein YP_002279250.1 KEGG: ret:RHE_PF00322 hypothetical protein YP_002279251.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000519 sugar ABC transporter, substrate-binding protein YP_002279252.1 KEGG: ret:RHE_PF00320 hypothetical protein YP_002279253.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00319 sugar ABC transporter, ATP-binding protein YP_002279254.1 PFAM: glycosyl hydrolase family 88; KEGG: rec:RHECIAT_PC0000516 glucoronyl hydrolase protein YP_002279255.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease protein YP_002279256.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000514 probable sugar ABC transporter, permease protein YP_002279257.1 PFAM: Heparinase II/III family protein; KEGG: ret:RHE_PF00315 hypothetical protein YP_002279258.1 KEGG: rec:RHECIAT_PC0000512 hypothetical protein YP_002279259.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_PC0000511 probable two-component response regulator protein YP_002279260.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: ret:RHE_PF00310 probable two-component sensor histidine kinase protein YP_002279261.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00309 probable amino acid ABC transporter, permease protein YP_002279262.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000508 probable ABC transporter, ATP-binding protein YP_002279263.1 KEGG: rec:RHECIAT_PC0000507 probable ABC transporter, substrate-binding protein YP_002279264.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000506 probable transcriptional regulator protein, GntR family YP_002279265.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rec:RHECIAT_PC0000505 hypothetical protein YP_002279266.1 PFAM: plasmid stabilization system; KEGG: rec:RHECIAT_PC0000504 plasmid stabilization protein YP_002279267.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_PC0000503 transcriptional regulator protein, LacI family YP_002279268.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: rec:RHECIAT_PC0000502 probable alpha-L-fucosidase protein YP_002279269.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000501 sugar ABC transporter, substrate-binding protein YP_002279270.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000500 probable sugar ABC transporter, permease protein YP_002279271.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000499 probable sugar ABC transporter, permease protein YP_002279273.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_PC0000498 rhizopine ABC transporter, substrate-binding protein YP_002279274.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ret:RHE_PF00299 methyl-accepting chemotaxis protein YP_002279275.1 KEGG: rec:RHECIAT_PC0000496 hypothetical protein YP_002279276.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000494 probable sugar ABC transporter, substrate-binding protein YP_002279277.1 KEGG: rec:RHECIAT_PC0000493 hypothetical protein YP_002279278.1 PFAM: glycosyl hydrolase family 88; KEGG: ret:RHE_PF00295 hypothetical protein YP_002279279.1 KEGG: rec:RHECIAT_PC0000491 probable polygalacturonase protein YP_002279280.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000490 probable sugar ABC transporter, ATP-binding protein YP_002279281.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000489 probable sugar ABC transporter, permease protein YP_002279282.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000488 probable sugar ABC transporter, permease protein YP_002279283.1 PFAM: ROK family protein; KEGG: rec:RHECIAT_PC0000487 probable transcriptional regulator protein, ROK family YP_002279284.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PC0000486 probable transcriptional regulator protein, AraC family YP_002279285.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_PC0000485 probable transcriptional regulator protein, LacI family YP_002279286.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_PC0000484 probable transcriptional regulator protein, TetR family YP_002279287.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_PC0000483 probable protein secretion protein, HlyD family YP_002279288.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_PC0000482 probable protein secretion protein, HlyD family YP_002279289.1 PFAM: acriflavin resistance protein; KEGG: ret:RHE_PF00284 probable efflux transporter protein, acriflavin resistance protein family YP_002279290.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rec:RHECIAT_PC0000480 hypothetical protein YP_002279291.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rec:RHECIAT_PC0000479 probable nucleotide permease protein YP_002279292.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_PC0000478 methyl-accepting chemotaxis protein YP_002279293.1 KEGG: rec:RHECIAT_PC0000477 hypothetical protein YP_002279294.1 PFAM: Protein of unknown function DUF1778; KEGG: xau:Xaut_0819 protein of unknown function DUF1778 YP_002279295.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acr:Acry_3270 GCN5-related N-acetyltransferase YP_002279296.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: rec:RHECIAT_PC0000476 magnesium/cobalt transporter protein YP_002279297.1 PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_PF00280 hypothetical protein YP_002279298.1 PFAM: beta-lactamase domain protein; KEGG: ret:RHE_PF00279 beta-lactamase-like domain protein YP_002279299.1 KEGG: rec:RHECIAT_PC0000473 hypothetical protein YP_002279300.1 KEGG: rec:RHECIAT_PC0000472 hypothetical protein YP_002279301.1 KEGG: rec:RHECIAT_PC0000471 hypothetical protein YP_002279302.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rec:RHECIAT_PC0000470 alpha amylase protein YP_002279303.1 KEGG: ret:RHE_PF00276 probable trehalose synthase protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002279304.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002279305.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rec:RHECIAT_PC0000467 acetolactate synthase protein, large subunit (thiamine pyrophosphate-dependent enzyme) YP_002279306.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_002279307.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_PC0000465 probable transcriptional regulator protein, AsnC family YP_002279308.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00271 probable iron ABC transporter, ATP-binding protein YP_002279309.1 PFAM: transport system permease protein; KEGG: rec:RHECIAT_PC0000463 iron ABC transporter, permease protein YP_002279310.1 PFAM: periplasmic binding protein; KEGG: ret:RHE_PF00269 probable iron ABC transporter, substrate-binding protein YP_002279311.1 KEGG: ret:RHE_PF00267 hypothetical protein YP_002279312.1 KEGG: rec:RHECIAT_PC0000459 hypothetical protein YP_002279313.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_PF00265 probable two-component sensor histidine kinase/response regulator hybrid protein YP_002279314.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_PF00264 probable two-component sensor histidine kinase/response regulator hybrid protein YP_002279315.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rpc:RPC_0160 transcriptional regulators, CopG/Arc/MetJ DNA-binding domain YP_002279316.1 PFAM: plasmid stabilization system; KEGG: rpc:RPC_2216 plasmid stabilization system YP_002279317.1 KEGG: rec:RHECIAT_PC0000456 1,4-alpha-glucan branching enzyme (alpha amylase protein); TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002279318.1 KEGG: ret:RHE_PF00262 4-alpha-glucanotransferase (amylomaltase) protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_002279319.1 KEGG: rec:RHECIAT_PC0000451 hypothetical protein YP_002279320.1 KEGG: ret:RHE_PF00432 hypothetical protein YP_002279321.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sme:SMb20112 hypothetical protein YP_002279322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_3986 binding-protein-dependent transport systems inner membrane component YP_002279323.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20142 oligopeptide ABC transporter permease protein YP_002279324.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sme:SMb20141 oligopeptide ABC transporter ATP-binding protein YP_002279325.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_PC00143 probable D-2-hydroxyacid dehydrogensase protein YP_002279326.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: azc:AZC_2647 transcriptional regulatory protein YP_002279327.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_002279328.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: art:Arth_0032 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_002279329.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: ret:RHE_PC00045 hypothetical protein YP_002279330.1 PFAM: Aldehyde dehydrogenase; KEGG: sme:SMb20262 semialdehyde dehydrogenase protein YP_002279331.1 PFAM: extracellular solute-binding protein family 5; KEGG: atc:AGR_pAT_98 chain A, dipeptide binding protein complex with glycyl-L-leucine YP_002279332.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bbr:BB4684 malate/L-lactate dehydrogenase YP_002279333.1 KEGG: rec:RHECIAT_PC0000450 hypothetical protein YP_002279334.1 KEGG: ret:RHE_PF00257 hypothetical protein YP_002279336.1 KEGG: rec:RHECIAT_PC0000447 hypothetical protein YP_002279337.1 KEGG: rec:RHECIAT_PC0000446 hypothetical protein YP_002279338.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PF00256 probable transcriptional regulator protein, LacI family YP_002279339.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000444 glutamine ABC transporter, substrate binding protein YP_002279340.1 KEGG: rec:RHECIAT_PC0000443 glutamine ABC transporter, ATP-binding protein; TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase YP_002279341.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PC0000442 D-amino acid oxidase protein YP_002279342.1 KEGG: rec:RHECIAT_PC0000441 hypothetical protein YP_002279343.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_PF00249 metal-dependent hydrolase protein YP_002279344.1 KEGG: rec:RHECIAT_PC0000437 hypothetical protein YP_002279345.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: rec:RHECIAT_PC0000436 probable phospholipase D protein YP_002279346.1 PFAM: protein of unknown function DUF763; KEGG: rec:RHECIAT_PC0000435 hypothetical protein YP_002279347.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: smd:Smed_5578 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_002279348.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_PC0000434 hypothetical conserved membrane protein YP_002279349.1 PFAM: protein of unknown function UPF0153; KEGG: rpc:RPC_2209 protein of unknown function UPF0153 YP_002279350.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: atc:AGR_L_1489 hypothetical protein YP_002279351.1 PFAM: protein of unknown function DUF982; KEGG: smd:Smed_4387 protein of unknown function DUF982 YP_002279352.1 PFAM: Cold-shock protein DNA-binding; Ribonuclease B OB region domain; SMART: Cold shock protein; KEGG: sme:SMa0181 CspA7 cold shock protein YP_002279353.1 KEGG: ret:RHE_PF00244 hypothetical protein YP_002279354.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mlo:mlr0132 hypothetical protein YP_002279355.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; KEGG: sma:SAV2739 LuxR-family transcriptional regulator YP_002279356.1 PFAM: alpha/beta hydrolase fold; KEGG: mlo:mll3776 streptothricin-acteyl-transferase YP_002279357.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00243 dipeptide ABC transporter, ATP-binding protein YP_002279358.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PF00242 dipeptide ABC transporter, ATP-binding protein YP_002279359.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000430 dipeptide ABC transporter, permease protein YP_002279360.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000429 dipeptide ABC transporter, permease protein YP_002279361.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000428 dipeptide ABC transporter, substrate-binding protein YP_002279362.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000427 dihydrodipicolinate synthase protein YP_002279363.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rec:RHECIAT_PC0000426 gluconolactonase protein YP_002279364.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: ret:RHE_PF00236 hypothetical protein YP_002279365.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PF00235 probable transcriptional regulator protein, GntR family YP_002279366.1 PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PF00234 probable oligopeptide ABC transporter, substrate-binding protein YP_002279367.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00233 probable oligopeptide ABC transporter, permease protein YP_002279368.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00232 probable oligopeptide ABC transporter, permease protein YP_002279369.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000420 probable oligopeptide ABC transporter, ATP-binding protein YP_002279370.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rec:RHECIAT_PC0000419 racemase protein YP_002279371.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PF00229 isomerase protein YP_002279372.1 PFAM: NADPH-dependent FMN reductase; KEGG: rec:RHECIAT_PC0000417 NADPH:quinone reductase protein YP_002279373.1 PFAM: nitroreductase; KEGG: rec:RHECIAT_PC0000416 probable nitroreductase protein YP_002279374.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rec:RHECIAT_PC0000414 probable transcriptional regulator protein (NodW-like) YP_002279375.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_PC0000413 two-component response regulator protein YP_002279376.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rec:RHECIAT_PC0000412 two-component response regulator protein - NodW mutant supressor protein YP_002279377.1 KEGG: rec:RHECIAT_PC0000411 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002279378.1 PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: rec:RHECIAT_PC0000410 hypothetical protein YP_002279379.1 PFAM: protein of unknown function DUF72; KEGG: ote:Oter_1062 protein of unknown function DUF72 YP_002279380.1 KEGG: rec:RHECIAT_PC0000408 hypothetical protein YP_002279381.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: rec:RHECIAT_PC0000407 plasmid partitioning protein RepAc1 YP_002279382.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: rec:RHECIAT_PC0000406 plasmid partitioning protein RepBc1 YP_002279383.1 PFAM: replication protein C; KEGG: ret:RHE_PF00212 plasmid replication protein RepCf2 YP_002279384.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000127 dihydrodipicolinate synthase protein YP_002279385.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000128 probable transcriptional regulator protein, GntR family YP_002279386.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000129 probable sugar ABC transporter, substrate-binding protein YP_002279387.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000130 probable sugar ABC transporter, permease protein YP_002279388.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000131 probable sugar ABC transporter, permease protein YP_002279389.1 PFAM: PfkB domain protein; KEGG: ret:RHE_PF00099 probable carbohydrate kinase protein, PfkB family YP_002279390.1 PFAM: phosphate transporter; KEGG: sme:SMc02861 phosphate transport transmembrane protein YP_002279391.1 PFAM: protein of unknown function DUF47; KEGG: smd:Smed_3394 protein of unknown function DUF47 YP_002279392.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7227 ABC transporter, permease protein YP_002279393.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr7226 sugar ABC transporter, permease protein YP_002279394.1 PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr7225 hypothetical protein YP_002279395.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: mlo:mlr7217 transcriptional regulator YP_002279396.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mlo:mll7218 probable lipase/esterase YP_002279397.1 PFAM: oxidoreductase domain protein; KEGG: mlo:mll7219 dehydrogenase YP_002279398.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr7228 hypothetical protein YP_002279399.1 PFAM: regulatory protein DeoR; KEGG: mlo:mll7220 transcriptional regulator YP_002279400.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: mlo:mlr7221 aldolase YP_002279401.1 PFAM: PfkB domain protein; KEGG: mlo:mlr7223 hypothetical protein YP_002279402.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mlr7224 sugar ABC transportor, ATP-binding protein YP_002279403.1 PFAM: oxidoreductase domain protein; KEGG: sme:SMc03812 oxidoreductase protein YP_002279404.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMc03811 hypothetical protein YP_002279405.1 KEGG: sme:SMc03810 hypothetical protein YP_002279406.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: mlo:mlr7233 ribulose-5-phosphate 3-epimerase YP_002279407.1 PFAM: ROK family protein; KEGG: mlo:mlr7234 glucose kinase YP_002279408.1 KEGG: ret:RHE_PF00211 trehalosemaltose transcriptional regulator protein, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_002279409.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000402 trehalosemaltose ABC transporter, permease protein YP_002279410.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000401 trehalosemaltose ABC transporter, permease protein YP_002279411.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PF00207 trehalosemaltose ABC transporter, ATP-binding protein YP_002279412.1 PFAM: protein of unknown function DUF1037; KEGG: ret:RHE_PF00206 trehalosemaltose utilization protein YP_002279413.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: ret:RHE_PF00205 myo-inositol 2-dehydrogenase protein YP_002279414.1 KEGG: ret:RHE_PF00204 hypothetical protein YP_002279415.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_PC0000396 probable adenosylmethionine--8-amino-7-oxononanoate aminotransferase protein YP_002279416.1 PFAM: aminotransferase class-III; KEGG: ret:RHE_PF00202 hypothetical protein YP_002279417.1 PFAM: Aldehyde dehydrogenase; KEGG: rec:RHECIAT_PC0000395 probable succinate-semialdehyde dehydrogenase (NAD(P)(+)) protein YP_002279418.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_PC0000383 probable transcriptional regulator protein, AsnC family YP_002279419.1 PFAM: protein of unknown function DUF1185; KEGG: ret:RHE_PF00199 hypothetical protein YP_002279420.1 SMART: GAF domain protein; KEGG: rec:RHECIAT_PC0000392 hypothetical protein YP_002279421.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: ret:RHE_PF00197 probable nitrilotriacetate monooxygenase component B protein YP_002279422.1 PFAM: Aldehyde dehydrogenase; KEGG: ret:RHE_PF00196 probable aldehyde dehydrogenase protein YP_002279423.1 PFAM: monooxygenase; KEGG: ret:RHE_PF00195 oxidoreductase protein YP_002279424.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PF00194 probable 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase protein YP_002279425.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_PC0000387 gamma-carboxymuconolactone decarboxylase protein YP_002279426.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000386 probable amino acid ABC transporter, substrate-binding protein YP_002279427.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000385 probable amino acid ABC transporter, permease protein YP_002279428.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000384 probable amino acid ABC transporter, ATP-binding protein YP_002279429.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_PC0000383 probable transcriptional regulator protein, AsnC family YP_002279430.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rec:RHECIAT_PC0000382 transcriptional regulator protein, GntR family YP_002279431.1 KEGG: rec:RHECIAT_PC0000381 probable amino acid ABC transporter, ATP-binding protein; TIGRFAM: ectoine/hydroxyectoine ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_002279432.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000380 probable amino acid ABC transporter, substrate-binding protein YP_002279433.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; ectoine/hydroxyectoine ABC transporter, permease protein EhuC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000379 probable amino acid ABC transporter, permease protein YP_002279434.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; ectoine/hydroxyectoine ABC transporter, permease protein EhuD; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000378 probable amino acid ABC transporter, permease protein YP_002279435.1 TIGRFAM: ectoine utilization protein EutA; PFAM: Asp/Glu/hydantoin racemase; KEGG: rec:RHECIAT_PC0000377 arylmalonate decarboxylase protein YP_002279436.1 catalyzes the formation of 2-oxobutanoate from L-threonine; involved in ectoine utilization YP_002279437.1 cyclodeaminase YP_002279438.1 TIGRFAM: ectoine utilization protein EutD; PFAM: creatinase; peptidase M24; KEGG: rec:RHECIAT_PC0000374 probable Xaa-Pro dipeptidase protein YP_002279439.1 TIGRFAM: ectoine utilization protein EutE; PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: rec:RHECIAT_PC0000373 succinylglutamate desuccinylase/aspartoacylase family protein YP_002279440.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_PC0000372 probable methyl-accepting chemotaxis protein YP_002279441.1 KEGG: rec:RHECIAT_PC0000371 hypothetical protein YP_002279442.1 KEGG: ret:RHE_PF00177 hypothetical protein YP_002279443.1 KEGG: ret:RHE_PF00176 hypothetical protein YP_002279444.1 KEGG: ret:RHE_PF00175 hypothetical protein YP_002279446.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_002279447.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_002279448.1 the hook connects flagellar basal body to the flagellar filament YP_002279449.1 SMART: Calcium-binding EF-hand-containing protein; KEGG: ret:RHE_PF00170 calcium-binding protein YP_002279450.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_PF00169 calsymin transcriptional regulator, TetR family YP_002279451.1 PFAM: protein of unknown function DUF1217; KEGG: ret:RHE_PF00168 hypothetical protein YP_002279452.1 KEGG: atu:Atu6132 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002279453.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000366 probable amino acid ABC transporter, substrate-binding protein YP_002279454.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00166 probable amino acid ABC transporter, permease protein YP_002279455.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000364 probable amino acid ABC transporter, permease protein YP_002279456.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000363 probable amino acid ABC transporter, ATP-binding protein YP_002279457.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000362 probable transcriptional regulator protein, GntR family YP_002279458.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_PC0000361 probable amino acid ABC transporter, substrate-binding protein YP_002279459.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00161 probable amino acid ABC transporter, permease protein YP_002279460.1 TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000360 probable amino acid ABC transporter, permease protein YP_002279461.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000359 probable amino acid ABC transporter, ATP-binding protein YP_002279462.1 PFAM: PspA/IM30 family protein; KEGG: rec:RHECIAT_PC0000357 probable negative regulator protein PspA family (suppresses sigma54-dependent transcription) YP_002279463.1 KEGG: rec:RHECIAT_PC0000356 hypothetical protein YP_002279464.1 PFAM: Ion transport 2 domain protein; KEGG: rec:RHECIAT_PC0000355 cation transporter (potassium channel) protein YP_002279465.1 KEGG: rec:RHECIAT_PC0000354 hypothetical protein YP_002279466.1 PFAM: protein of unknown function DUF350; KEGG: rec:RHECIAT_PC0000353 hypothetical protein YP_002279467.1 KEGG: rec:RHECIAT_PC0000352 hypothetical protein YP_002279468.1 PFAM: glutathionylspermidine synthase; KEGG: rec:RHECIAT_PC0000351 glutathionylspermidine synthetase protein YP_002279469.1 KEGG: azc:AZC_3250 esterase YP_002279470.1 KEGG: ret:RHE_PC00230 hypothetical protein YP_002279471.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_PC00232 plasmid partitioning protein RepAc YP_002279472.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: ret:RHE_PC00233 plasmid partitioning protein RepBc YP_002279473.1 PFAM: replication protein C; KEGG: ret:RHE_PC00234 plasmid replication protein RepCc YP_002279474.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ret:RHE_PC00001 hypothetical protein YP_002279475.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: ret:RHE_PC00002 hypothetical protein YP_002279476.1 PFAM: monooxygenase; KEGG: ret:RHE_PC00003 oxidoreductase protein YP_002279477.1 KEGG: ret:RHE_PC00004 nitrilotriacetate monooxygenase protein component A YP_002279478.1 KEGG: ret:RHE_PC00005 probable hippurate hydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002279479.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PC00006 probable acetyltransferase protein YP_002279480.1 KEGG: ret:RHE_PC00007 probable amino acid ABC transporter, ATP-binding protein; TIGRFAM: polar amino acid ABC transporter, inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SMC domain protein; ABC transporter related; SMART: AAA ATPase YP_002279481.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00008 probable amino acid ABC transporter, substrate-binding protein YP_002279482.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PC00009 probable amino acid ABC transporter, substrate-binding protein YP_002279483.1 PFAM: monooxygenase; KEGG: ret:RHE_PC00010 probable oxidoreductase protein YP_002279484.1 PFAM: DSBA oxidoreductase; KEGG: ret:RHE_PC00011 probable 2-hydroxychromene-2-carboxylate isomerase protein YP_002279485.1 PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_PC00012 probable NAD(P)H-dependent FMN reductase protein YP_002279486.1 KEGG: ret:RHE_PC00013 hypothetical protein YP_002279489.1 PFAM: protein of unknown function DUF1234; KEGG: ret:RHE_PC00014 hypothetical protein YP_002279490.1 KEGG: ret:RHE_PC00015 hypothetical protein YP_002279491.1 PFAM: ChaC family protein; KEGG: ret:RHE_PC00016 hypothetical protein YP_002279492.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00017 probable taurine uptake ABC transporter, permease protein YP_002279493.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PC00018 probable taurine uptake ABC transporter, permease protein YP_002279494.1 KEGG: ret:RHE_PC00019 probable taurine uptake ABC transporter, substrate-binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3 YP_002279495.1 KEGG: ret:RHE_PC00020 hypothetical protein YP_002279496.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PC00021 probable transcriptional regulator protein, GntR family YP_002279497.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bpt:Bpet2422 RhtB family transporter YP_002279498.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pfl:PFL_2725 transcriptional regulator, AraC family YP_002279499.1 PFAM: protein of unknown function DUF1185; KEGG: ret:RHE_PC00022 hypothetical protein YP_002279500.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PC00023 probable hydrolase protein YP_002279501.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: ret:RHE_PC00024 probable flavoprotein oxidoreductase protein YP_002279502.1 PFAM: monooxygenase; KEGG: ret:RHE_PC00025 probable monooxygenase protein YP_002279503.1 PFAM: Aldehyde dehydrogenase; KEGG: ret:RHE_PC00026 aldehyde dehydrogenase protein YP_002279504.1 PFAM: NIPSNAP family containing protein; KEGG: ret:RHE_PC00027 hypothetical protein YP_002279505.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00028 probable polyamine ABC transporter, substrate-binding protein YP_002279506.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00029 probable polyamine ABC transporter, permease protein YP_002279507.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00030 probable polyamine ABC transporter, permease protein YP_002279508.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PC00031 probable polyamine ABC transporter, ATP-binding protein YP_002279509.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; KEGG: ret:RHE_PC00032 succinate-semialdehyde dehydrogenase protein YP_002279510.1 KEGG: ret:RHE_PC00033 hypothetical protein YP_002279511.1 PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_5484 hypothetical protein YP_002279512.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pfl:PFL_5485 hypothetical protein YP_002279513.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: cau:Caur_3750 GHMP kinase YP_002279514.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; Nucleotidyl transferase; KEGG: lip:LIA009 blr5988 YP_002279515.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rci:LRC285 dTDP-glucose 4,6-dehydratase YP_002279516.1 PFAM: conserved hypothetical protein; KEGG: bja:bll5419 hypothetical protein YP_002279517.1 KEGG: ret:RHE_CH01111 hypothetical protein YP_002279518.1 PFAM: glycosyl transferase family 2; KEGG: mlo:mlr4737 dolichol-p-glucose synthetase, (glycosyltransferase) YP_002279519.1 PFAM: sugar isomerase (SIS); KEGG: rpt:Rpal_4450 sugar isomerase (SIS) YP_002279521.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PC00036 probable sugar ABC transporter, ATP-binding protein YP_002279522.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00037 probable sugar ABC transporter, substrate-binding protein YP_002279523.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00038 probable sugar ABC transporter, permease protein YP_002279524.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00039 probable sugar ABC transporter, substrate-binding protein YP_002279525.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ret:RHE_PC00040 alpha-L-rhamnosidase protein YP_002279526.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PC00041 probable transcriptional regulator protein, LacI family YP_002279527.1 KEGG: syn:slr0912 hypothetical protein YP_002279528.1 PFAM: acriflavin resistance protein; KEGG: ret:RHE_PC00055 probable efflux cation transporter protein YP_002279529.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ret:RHE_PC00056 probable efflux cation transporter protein YP_002279530.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002279531.1 PFAM: saccharopine dehydrogenase; KEGG: ret:RHE_CH00359 dehydrogenase protein YP_002279532.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002279533.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002279534.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000401 glyoxalase (lactoylglutathione lyase) protein YP_002279535.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002279536.1 negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002279537.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002279538.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: rec:RHECIAT_CH0000405 inosine-adenosine-guanosine preferring nucleoside hydrolase protein YP_002279539.1 PFAM: heat shock protein Hsp20; KEGG: rec:RHECIAT_CH0000406 molecular chaperone small heat shock protein YP_002279540.1 PFAM: protein of unknown function DUF1150; KEGG: rec:RHECIAT_CH0000407 hypothetical protein YP_002279541.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002279542.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002279543.1 PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_CH00371 probable transcriptional regulator protein YP_002279544.1 transfers the fatty acyl group on membrane lipoproteins YP_002279545.1 PFAM: CBS domain containing protein; transporter; KEGG: rec:RHECIAT_CH0000413 hemolysin protein YP_002279546.1 PFAM: protein of unknown function UPF0054; KEGG: rec:RHECIAT_CH0000414 hypothetical protein YP_002279547.1 PFAM: PhoH family protein; KEGG: rec:RHECIAT_CH0000415 phosphate starvation inducible protein YP_002279548.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002279549.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rec:RHECIAT_CH0000417 1-acyl-sn-glycerol-3-phosphate acyltransferase (phospholipid/glycerol acyltransferase) protein YP_002279550.1 PFAM: ferric-uptake regulator; KEGG: ret:RHE_CH00378 ferric uptake regulation protein YP_002279551.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH00379 ribosomal-protein-alanine N-acetyltransferase protein YP_002279552.1 PFAM: peptidase M22 glycoprotease; KEGG: rec:RHECIAT_CH0000420 probable O-sialoglycoprotein endopeptidase protein YP_002279553.1 PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: ret:RHE_CH00381 nitrogen fixation protein YP_002279554.1 PFAM: UspA domain protein; KEGG: rec:RHECIAT_CH0000422 universal stress protein YP_002279555.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002279556.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00384 glyoxalase protein YP_002279557.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: rec:RHECIAT_CH0000425 hypothetical protein YP_002279558.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rec:RHECIAT_CH0000426 virulence factor transmembrane protein YP_002279559.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_002279560.1 KEGG: rec:RHECIAT_CH0000428 hypothetical protein YP_002279561.1 This protein performs the mismatch recognition step during the DNA repair process YP_002279562.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_002279563.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0000431 transcriptional regulator protein YP_002279564.1 KEGG: rec:RHECIAT_CH0000432 hypothetical protein YP_002279565.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0000433 two-component sensor histidine kinase/response regulator hybrid protein YP_002279566.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002279567.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ret:RHE_CH00393 rRNA methylase protein, TrmH family YP_002279568.1 KEGG: rec:RHECIAT_CH0000436 probable SAM-dependent methyltransferase protein YP_002279569.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rec:RHECIAT_CH0000438 hypothetical protein YP_002279570.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000439 acetyltransferase protein YP_002279571.1 KEGG: ret:RHE_CH00398 hypothetical protein YP_002279572.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002279573.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: rec:RHECIAT_CH0000442 proteinase IV protein YP_002279574.1 PFAM: protein of unknown function DUF1239; KEGG: rec:RHECIAT_CH0000443 hypothetical protein YP_002279575.1 PFAM: OstA family protein; KEGG: rec:RHECIAT_CH0000444 hypothetical protein YP_002279576.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000445 probable amino acid ABC transporter ATP-binding protein YP_002279577.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002279578.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0000447 permease YP_002279579.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ret:RHE_CH00406 probable sigma 54 modulation protein YP_002279580.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rec:RHECIAT_CH0000449 protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of the phosphotransferase system) YP_002279581.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0000450 probable methyl-accepting chemotaxis protein YP_002279582.1 PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0000451 ribokinase protein YP_002279583.1 PFAM: protein of unknown function DUF195; KEGG: rec:RHECIAT_CH0000452 DNA recombination protein YP_002279584.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002279585.1 KEGG: rec:RHECIAT_CH0000455 probable plasmid stabilization protein YP_002279586.1 PFAM: PilT protein domain protein; KEGG: rec:RHECIAT_CH0000456 plasmid stabilization protein YP_002279587.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002279588.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002279589.1 KEGG: ret:RHE_CH00416 hypothetical protein YP_002279590.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_002279591.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_002279592.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000462 hypothetical protein YP_002279593.1 SMART: Calcium-binding EF-hand-containing protein; KEGG: rec:RHECIAT_CH0000463 hypothetical protein YP_002279594.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH00421 hydrolase protein YP_002279595.1 KEGG: ret:RHE_CH00423 methylated-DNA-[protein]-cysteine S-methyltransferase protein; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Ada metal-binding domain protein; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type YP_002279596.1 KEGG: rec:RHECIAT_CH0000467 PEP phosphonomutase YP_002279597.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ret:RHE_CH00425 L-lactate dehydrogenase (cytochrome) protein YP_002279598.1 PFAM: fatty acid desaturase; KEGG: ret:RHE_CH00426 probable fatty acid desaturase protein YP_002279599.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: ret:RHE_CH00427 probable transcriptional regulator protein, ArsR family YP_002279600.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002279601.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_CH0000470 RNA polymerase sigma-70 factor protein, ECF family YP_002279602.1 KEGG: rec:RHECIAT_CH0000471 hypothetical protein YP_002279603.1 PFAM: beta-Ig-H3/fasciclin; KEGG: rec:RHECIAT_CH0000472 transforming growth factor-induced protein (and secreted protein MPB70) YP_002279604.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: rec:RHECIAT_CH0000473 probable two-component sensor histidine kinase protein YP_002279605.1 KEGG: ret:RHE_CH00433 hypothetical protein YP_002279606.1 KEGG: ret:RHE_CH00434 hypothetical protein YP_002279607.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0000476 probable cold shock protein YP_002279608.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002279609.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002279610.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002279611.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002279612.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0000481 methyl-accepting chemotaxis protein YP_002279613.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0000482 two-component sensor histidine kinase protein YP_002279614.1 KEGG: atc:AGR_L_816 hypothetical protein YP_002279615.1 PFAM: plasmid stabilization system; KEGG: atc:AGR_L_815 hypothetical protein YP_002279616.1 KEGG: rec:RHECIAT_CH0000508 DNA methylase protein YP_002279617.1 KEGG: rec:RHECIAT_CH0000509 hypothetical protein YP_002279618.1 KEGG: bur:Bcep18194_A6246 hypothetical protein YP_002279619.1 KEGG: atc:AGR_L_287 hypothetical protein YP_002279621.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PC0000013 probable transcriptional regulator protein, LysR family YP_002279622.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PF00008 probable oxidoreductase protein YP_002279623.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_PC0000011 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein YP_002279624.1 KEGG: atu:Atu4248 hypothetical protein YP_002279625.1 KEGG: rec:RHECIAT_CH0000510 hypothetical protein YP_002279626.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bja:blr7575 O-methyl transferase YP_002279627.1 KEGG: rec:RHECIAT_CH0000511 hypothetical protein YP_002279628.1 KEGG: rec:RHECIAT_CH0000512 hypothetical protein YP_002279629.1 KEGG: rec:RHECIAT_CH0000513 hypothetical protein YP_002279630.1 PFAM: methyltransferase type 12; KEGG: ret:RHE_CH00448 phospholipid N-methyltransferase protein YP_002279631.1 PFAM: regulatory protein TetR; KEGG: bja:bll1252 transcriptional regulatory protein YP_002279632.1 PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00449 probable oxidoreductase protein YP_002279633.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rec:RHECIAT_CH0000517 hypothetical protein YP_002279634.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0000518 probable D-amino acid dehydrogenase protein YP_002279635.1 PFAM: proline racemase; KEGG: ret:RHE_CH00452 probable proline racemase protein YP_002279636.1 PFAM: TfoX domain protein; KEGG: ret:RHE_CH00453 hypothetical protein YP_002279637.1 KEGG: ret:RHE_CH00454 hypothetical protein YP_002279638.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0000523 probable transcriptional regulator protein, TetR family YP_002279639.1 PFAM: alpha/beta hydrolase fold; KEGG: bac:BamMC406_5269 alpha/beta hydrolase fold YP_002279640.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0000529 probable zinc-binding oxidoreductase protein YP_002279641.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: atc:AGR_pAT_653 GTN Reductase YP_002279642.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0000530 transcriptional regulator protein, TetR family YP_002279643.1 KEGG: rde:RD1_2829 haloacetate dehalogenase H-1 YP_002279644.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pol:Bpro_1392 AraC family transcriptional regulator with amidase-like domain YP_002279645.1 PFAM: extracellular solute-binding protein family 3; KEGG: pol:Bpro_1391 extracellular solute-binding protein, family 3 YP_002279646.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pol:Bpro_1390 ABC transporter YP_002279647.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pol:Bpro_1389 amino acid ABC transporter permease, 3-TM region, His/Glu/Gln/Arg/opine YP_002279648.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pol:Bpro_1388 amino acid ABC transporter permease, 3-TM region, His/Glu/Gln/Arg/opine YP_002279649.1 PFAM: glutamine amidotransferase class-I; endoribonuclease L-PSP; peptidase C26; KEGG: rru:Rru_A0651 glutamine amidotransferase class-I YP_002279650.1 PFAM: FAD dependent oxidoreductase; KEGG: dac:Daci_0069 D-amino-acid dehydrogenase YP_002279651.1 PFAM: RbsD or FucU transport; KEGG: rec:RHECIAT_CH0000534 fucose dissimilation pathway protein YP_002279652.1 PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0000535 sugar transcriptional regulator protein, ROK family YP_002279653.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0000536 fructose ABC transporter substrate-binding protein YP_002279654.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH00466 fructose ABC transporter permease YP_002279655.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000538 fructose ABC transporter ATP-binding protein YP_002279656.1 KEGG: ret:RHE_CH00468 fructose transporter kinase YP_002279657.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002279658.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ret:RHE_CH00470 hypothetical protein YP_002279659.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000542 glyoxalase protein YP_002279660.1 KEGG: ret:RHE_CH00472 hypothetical conserved membrane protein YP_002279661.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0000544 transcriptional regulator protein, TetR family YP_002279662.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002279663.1 PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0000546 fructokinase protein YP_002279664.1 KEGG: rec:RHECIAT_CH0000547 trehalose-6-phosphate synthase protein; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20 YP_002279665.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002279666.1 activates fatty acids by binding to coenzyme A YP_002279667.1 PFAM: PRC-barrel domain protein; KEGG: rec:RHECIAT_CH0000550 hypothetical protein YP_002279668.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: rec:RHECIAT_CH0000551 beta-mannosidase protein YP_002279669.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000552 lactoylglutathione lyase protein YP_002279670.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000553 probable proline/glycine betaine ABC transporter permease YP_002279671.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000554 probable proline/glycine betaine ABC transporter ATP-binding protein YP_002279672.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000555 probable proline/glycine betaine ABC transporter permease YP_002279673.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: ret:RHE_CH00485 probable glycine betaine ABC transporter substrate binding protein YP_002279674.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0000558 probable transcriptional regulator protein, LysR family YP_002279675.1 PFAM: CutC family protein; KEGG: rec:RHECIAT_CH0000559 copper homeostasis protein YP_002279676.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0000560 probable Zn-dependent alcohol dehydrogenase protein YP_002279677.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0000561 probable sugar ABC transporter permease YP_002279678.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000562 probable sugar ABC transporter ATP-binding protein YP_002279679.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH00492 probable sugar ABC transporter substrate-binding protein YP_002279680.1 PFAM: RbsD or FucU transport; KEGG: rec:RHECIAT_CH0000564 fucose dissimilation pathway protein YP_002279681.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0000565 L-fucose dehydrogenase protein YP_002279682.1 PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein; KEGG: rec:RHECIAT_CH0000566 probable altronate dehydratase protein YP_002279684.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_CH0000567 probable transcriptional regulator protein YP_002279685.1 PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000570 probable ABC transporter ATP-binding protein YP_002279686.1 PFAM: regulatory protein MarR; KEGG: cak:Caul_1741 MarR family transcriptional regulator YP_002279687.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH00498 multidrug transporter YP_002279688.1 KEGG: ret:RHE_CH00499 hypothetical protein YP_002279689.1 KEGG: rec:RHECIAT_CH0000575 hypothetical protein YP_002279690.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rec:RHECIAT_CH0000578 probable dioxygenase protein YP_002279691.1 KEGG: ret:RHE_CH00506 regulator protein YP_002279692.1 PFAM: protein of unknown function DUF344; KEGG: ret:RHE_CH00507 hypothetical protein YP_002279693.1 KEGG: rec:RHECIAT_CH0000582 phosphate regulon, two-component sensor histidine kinase protein; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_002279694.1 KEGG: rec:RHECIAT_CH0000584 phosphate ABC transporter substrate-binding protein YP_002279695.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000585 phosphate ABC transporter permease protein YP_002279696.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000586 phosphate ABC transporter permease protein YP_002279697.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002279698.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rec:RHECIAT_CH0000588 phosphate uptake transcriptional regulator protein YP_002279699.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_CH0000589 phosphate regulon, two-component response regulator protein YP_002279700.1 PFAM: GcrA cell cycle regulator; KEGG: rec:RHECIAT_CH0000590 hypothetical protein YP_002279701.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002279702.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002279703.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002279704.1 KEGG: rec:RHECIAT_CH0000594 hypothetical protein YP_002279705.1 protein associated with Co2+ and Mg2+ efflux YP_002279706.1 catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis YP_002279707.1 Catalyzes the deamination of dCTP to form dUTP YP_002279708.1 KEGG: aha:AHA_3580 ATP-dependent DNA helicase RecG YP_002279709.1 KEGG: rec:RHECIAT_CH0000599 hypothetical protein YP_002279710.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00531 hypothetical protein YP_002279711.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0000601 methyl-accepting chemotaxis protein YP_002279712.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_CH0000603 probable amino acid ABC transporter substrate-binding protein YP_002279713.1 KEGG: ret:RHE_CH00534 hypothetical protein YP_002279714.1 KEGG: rec:RHECIAT_CH0000605 hypothetical protein YP_002279715.1 PFAM: peptidase S24 and S26 domain protein; KEGG: rec:RHECIAT_CH0000606 phage-related transcriptional regulator protein YP_002279716.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_CH0000607 probable two-component response regulator protein YP_002279717.1 KEGG: rec:RHECIAT_CH0000608 hypothetical protein YP_002279718.1 PFAM: protein of unknown function DUF952; KEGG: rec:RHECIAT_CH0000609 hypothetical protein YP_002279719.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_002279720.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rec:RHECIAT_CH0000611 DNA-damage-inducible F protein (Na+ driven multidrug efflux pump) YP_002279721.1 PFAM: SCP-like extracellular; KEGG: rec:RHECIAT_CH0000612 hypothetical protein YP_002279722.1 KEGG: rec:RHECIAT_CH0000613 hypothetical protein YP_002279723.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; methyltransferase type 12; KEGG: rec:RHECIAT_CH0000614 probable methyltransferase protein YP_002279724.1 PFAM: protein of unknown function DUF161; KEGG: ret:RHE_CH00545 hypothetical protein YP_002279725.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_CH0000617 hypothetical protein YP_002279726.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: rec:RHECIAT_CH0000618 transcriptional regulator protein YP_002279727.1 PFAM: protein of unknown function DUF161; KEGG: rec:RHECIAT_CH0000619 hypothetical protein YP_002279728.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: rec:RHECIAT_CH0000620 ATP-dependent RNA/DNA helicase protein YP_002279729.1 KEGG: rec:RHECIAT_CH0000621 phosphoesterase protein YP_002279730.1 KEGG: ret:RHE_CH00551 hypothetical protein YP_002279731.1 KEGG: mag:amb4148 predicted alpha/beta hydrolase YP_002279732.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_CH0000623 dihydrofolate reductase protein YP_002279733.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000624 hypothetical protein YP_002279734.1 PFAM: protein of unknown function DUF81; KEGG: ret:RHE_CH00554 permease YP_002279735.1 PFAM: peptidoglycan-binding protein; Sel1 domain protein repeat-containing protein; KEGG: rec:RHECIAT_CH0000627 hemaglutinin protein YP_002279736.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000628 lactoylglutathione lyase protein YP_002279737.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: acr:Acry_1425 short-chain dehydrogenase/reductase SDR YP_002279738.1 KEGG: rec:RHECIAT_CH0000629 probable DNA glycosylase protein YP_002279739.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ret:RHE_CH00557 acyl-CoA dehydrogenase protein YP_002279740.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002279741.1 PFAM: cupin; KEGG: bac:BamMC406_6039 cupin 2 conserved barrel domain protein YP_002279742.1 PFAM: enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ret:RHE_CH00559 enoyl-CoA hydratase protein YP_002279743.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0000633 cold shock protein YP_002279744.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0000634 probable transcriptional regulator protein, MarR family YP_002279745.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0000635 hypothetical protein YP_002279746.1 KEGG: rec:RHECIAT_CH0000636 hypothetical protein YP_002279747.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: atc:AGR_C_3943 methyl-accepting chemotaxis protein McpU YP_002279748.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0000637 probable transporter permease YP_002279749.1 KEGG: ret:RHE_CH00565 probable transcriptional regulator protein, TetR family YP_002279750.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: rec:RHECIAT_CH0000639 probable two-component sensor histidine kinase/response regulator hybrid protein YP_002279751.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_002279752.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002279753.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rec:RHECIAT_CH0000642 UDP-glucose 4-epimerase protein YP_002279754.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rec:RHECIAT_CH0000643 sensory box/GGDEF family protein YP_002279755.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_002279756.1 PFAM: UvrD/REP helicase; KEGG: ret:RHE_CH00573 ATP-dependent DNA helicase protein YP_002279757.1 KEGG: rec:RHECIAT_CH0000647 hypothetical protein YP_002279758.1 KEGG: rec:RHECIAT_CH0000648 hypothetical protein YP_002279759.1 KEGG: rec:RHECIAT_CH0000649 hypothetical protein YP_002279760.1 PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH00575 hypothetical protein YP_002279761.1 KEGG: rec:RHECIAT_CH0000651 hypothetical protein YP_002279762.1 KEGG: rec:RHECIAT_CH0000653 hypothetical protein YP_002279763.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002279764.1 KEGG: rec:RHECIAT_CH0000655 hypothetical protein YP_002279765.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002279766.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000657 hypothetical protein YP_002279767.1 SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: rec:RHECIAT_CH0000658 arsenate reductase (phosphatase) protein YP_002279768.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002279769.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002279770.1 PFAM: protein of unknown function DUF329; KEGG: rec:RHECIAT_CH0000661 hypothetical protein YP_002279771.1 PFAM: transposase IS3/IS911 family protein; KEGG: gdi:GDI1077 transposase YP_002279772.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0000667 protein secretion protein, HlyD family YP_002279773.1 KEGG: rec:RHECIAT_CH0000668 protein ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_002279774.1 KEGG: rec:RHECIAT_CH0000669 hypothetical protein YP_002279775.1 KEGG: rec:RHECIAT_CH0000670 hypothetical protein YP_002279776.1 PFAM: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0000671 transcriptional regulator protein, LuxR family YP_002279777.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: rru:Rru_A2661 diguanylate cyclase (GGDEF domain) YP_002279778.1 KEGG: smd:Smed_1691 hypothetical protein YP_002279779.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: acr:Acry_1654 short-chain dehydrogenase/reductase SDR YP_002279780.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rsq:Rsph17025_3579 hypothetical protein YP_002279781.1 KEGG: rsq:Rsph17025_3581 hypothetical protein YP_002279782.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rsq:Rsph17025_3582 hypothetical protein YP_002279783.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_PA0000142 sugar ABC transporter permease YP_002279784.1 PFAM: extracellular solute-binding protein family 1; KEGG: rsq:Rsph17025_3584 hypothetical protein YP_002279785.1 PFAM: xylose isomerase; KEGG: mlo:mll3595 similar to D-tagatose 3-epimerase-related protein YP_002279786.1 PFAM: ROK family protein; KEGG: sme:SMc03816 transcription regulator protein YP_002279787.1 PFAM: PfkB domain protein; KEGG: rsq:Rsph17025_3586 tagatose-6-phosphate kinase YP_002279788.1 PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: rsq:Rsph17025_3587 hypothetical protein YP_002279789.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_PF00005 ribitol 2-dehydrogenase protein YP_002279790.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMc02339 oxidoreductase protein YP_002279791.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sus:acid_7869 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_002279792.1 PFAM: oxidoreductase domain protein; KEGG: tle:Tlet_0392 oxidoreductase domain protein YP_002279793.1 PFAM: PfkB domain protein; KEGG: spe:Spro_1034 PfkB domain protein YP_002279794.1 Converts D-sorbitol to L-sorbose YP_002279795.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0003132 probable L-iditol 2-dehydrogenase protein YP_002279796.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: psb:Psyr_2154 regulatory protein, LacI:periplasmic binding protein/LacI transcriptional regulator YP_002279797.1 KEGG: ots:OTBS_0057 hypothetical protein YP_002279798.1 KEGG: rec:RHECIAT_CH0000690 probable polysaccharidase protein YP_002279799.1 PFAM: O-antigen polymerase; KEGG: rec:RHECIAT_CH0003464 exopolysaccharide production protein YP_002279800.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: rec:RHECIAT_CH0000691 DNA helicase protein YP_002279801.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: rec:RHECIAT_CH0000693 DNA helicase protein YP_002279802.1 KEGG: rec:RHECIAT_CH0000694 hypothetical protein YP_002279803.1 KEGG: ret:RHE_CH00619 hypothetical protein YP_002279804.1 PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0000696 stress-induced protein YP_002279805.1 PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_CH00621 hypothetical protein YP_002279806.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0000698 transporter permease protein YP_002279807.1 PFAM: phospholipase/carboxylesterase; glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000699 glyoxalase/bleomycin resistance protein/dioxygenase protein YP_002279808.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0000700 probable two-component sensor histidine kinase/response regulator hybrid protein YP_002279809.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0000701 probable two-component response regulator protein YP_002279810.1 KEGG: rec:RHECIAT_CH0000702 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002279811.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0000703 two-component response regulator protein YP_002279812.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: ret:RHE_CH00628 transcriptional regulator protein, LuxR family YP_002279813.1 KEGG: rec:RHECIAT_CH0000705 two-component response regulator protein YP_002279814.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH00630 two-component sensor histidine kinase protein YP_002279815.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002279816.1 KEGG: rec:RHECIAT_CH0000708 hypothetical protein YP_002279817.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rec:RHECIAT_CH0000709 probable cation efflux system protein YP_002279818.1 KEGG: ret:RHE_CH00634 hypothetical protein YP_002279819.1 KEGG: rec:RHECIAT_CH0000711 hypothetical protein YP_002279820.1 PFAM: chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0000713 methyl-accepting chemotaxis protein YP_002279821.1 KEGG: rec:RHECIAT_CH0000714 chemotaxis protein CheX YP_002279822.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0000715 chemotaxis two-component response regulator protein YP_002279823.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: rec:RHECIAT_CH0000716 chemotaxis two-component sensor histidine kinase protein YP_002279824.1 PFAM: CheW domain protein; KEGG: rec:RHECIAT_CH0000717 chemotaxis signal transduction protein YP_002279825.1 PFAM: MCP methyltransferase CheR-type; KEGG: rec:RHECIAT_CH0000718 methyl-accepting chemotaxis protein O-methyltransferase protein YP_002279826.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_002279827.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0000720 chemotaxis two-component response regulator protein YP_002279828.1 stimulates methylation of MCP proteins; catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_002279829.1 KEGG: rec:RHECIAT_CH0000722 hypothetical protein YP_002279830.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002279831.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; KEGG: rec:RHECIAT_CH0000724 probable transcriptional regulator protein, LuxR family YP_002279832.1 PFAM: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0000725 probable transcriptional regulator protein, LuxR family YP_002279833.1 KEGG: rec:RHECIAT_CH0000726 hypothetical protein YP_002279834.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_002279835.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002279836.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0000729 flagellar motor switch protein YP_002279837.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0000730 flagellar C-ring motor switch protein YP_002279838.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002279839.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_002279840.1 involved in type III protein export during flagellum assembly YP_002279841.1 KEGG: rec:RHECIAT_CH0000734 hypothetical conserved membrane protein YP_002279842.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella YP_002279843.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_002279844.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_002279845.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_002279846.1 required for the assembly of the flagellar basal body P-ring; Bradyrhizobium japonicum has two types of flagella, a single thick flagella and a few thin flagella; the protein in this cluster is associated with the thin flagella YP_002279847.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_002279848.1 KEGG: rec:RHECIAT_CH0000741 exported flagella related protein YP_002279849.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod YP_002279850.1 PFAM: flagellar basal body-associated protein FliL; KEGG: rec:RHECIAT_CH0000743 flagellar biosynthesis transmembrane protein YP_002279851.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002279852.1 KEGG: rec:RHECIAT_CH0000745 hypothetical protein YP_002279853.1 PFAM: flagellin domain protein; KEGG: rec:RHECIAT_CH0000747 flagellin C protein YP_002279854.1 PFAM: flagellin domain protein; KEGG: ret:RHE_CH00670 flagellin C protein YP_002279855.1 PFAM: flagellin domain protein; KEGG: ret:RHE_CH00671 flagellin C protein YP_002279856.1 PFAM: flagellin domain protein; KEGG: ret:RHE_CH00672 flagellin C protein YP_002279857.1 KEGG: rec:RHECIAT_CH0000751 hypothetical protein YP_002279858.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002279859.1 a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation YP_002279860.1 KEGG: rec:RHECIAT_CH0000754 chemotaxis motility protein YP_002279861.1 PFAM: lytic transglycosylase catalytic; KEGG: ret:RHE_CH00677 hypothetical protein YP_002279862.1 PFAM: transcriptional regulator; KEGG: rec:RHECIAT_CH0000756 probable two-component response regulator protein YP_002279863.1 the hook connects flagellar basal body to the flagellar filament YP_002279864.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_002279865.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_002279866.1 acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_002279867.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_002279868.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_002279869.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_002279870.1 membrane protein involved in the flagellar export apparatus YP_002279871.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_002279872.1 KEGG: rec:RHECIAT_CH0000766 hypothetical protein YP_002279873.1 KEGG: ret:RHE_CH00689 hypothetical protein YP_002279874.1 KEGG: ret:RHE_CH00690 hypothetical protein YP_002279875.1 KEGG: ret:RHE_CH00691 hypothetical protein YP_002279876.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: rec:RHECIAT_CH0000770 N-acetyl mannosamine transferase protein YP_002279877.1 KEGG: ret:RHE_CH00693 succinoglycan biosynthesis transporter YP_002279878.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002279879.1 KEGG: ret:RHE_CH00695 transcriptional regulator protein, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_002279880.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH00696 alpha-glucoside ABC transporter substrate-binding protein YP_002279881.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH00697 alpha-glucoside ABC transporter permease YP_002279882.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH00698 alpha-glucoside ABC transporter permease YP_002279883.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ret:RHE_CH00699 alpha-glucosidase protein YP_002279884.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000779 alpha-glucoside ABC transporter ATP-binding protein YP_002279885.1 KEGG: rec:RHECIAT_CH0000780 hypothetical protein YP_002279886.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_002279887.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: rec:RHECIAT_CH0000784 6-phosphogluconolactonase protein YP_002279888.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002279889.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0000786 oxidoreductase protein YP_002279890.1 PFAM: glutamine synthetase; KEGG: ret:RHE_CH00706 glutamine synthetase protein YP_002279891.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0000788 hypothetical protein YP_002279893.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0000790 methyl-accepting chemotaxis protein YP_002279894.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ret:RHE_CH00709 methyl-accepting chemotaxis protein YP_002279895.1 KEGG: rec:RHECIAT_CH0000792 hypothetical protein YP_002279896.1 PFAM: regulatory protein LysR; KEGG: rec:RHECIAT_CH0000793 probable transcriptional regulator protein, LysR family YP_002279897.1 KEGG: rec:RHECIAT_CH0000794 hypothetical protein YP_002279898.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: ret:RHE_CH00712 isocitrate lyase protein YP_002279899.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rec:RHECIAT_CH0000796 probable transcriptional regulator protein YP_002279900.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0000797 spermidine/putrescine ABC transporter substrate-binding protein YP_002279901.1 KEGG: rec:RHECIAT_CH0000798 spermidine/putrescine ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase; PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA YP_002279902.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000799 spermidine/putrescine ABC transporter permease I protein YP_002279903.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000800 spermidine/putrescine ABC transporter permease II protein YP_002279904.1 PFAM: AsmA family protein; KEGG: ret:RHE_CH00718 hypothetical conserved membrane protein YP_002279905.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_002279906.1 KEGG: rec:RHECIAT_CH0000804 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002279907.1 TIGRFAM: phasin; PFAM: Phasin 2 family protein; KEGG: ret:RHE_CH00721 hypothetical protein YP_002279908.1 KEGG: ret:RHE_CH00727 hypothetical protein YP_002279909.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH00729 probable transcriptional regulator protein, LysR family YP_002279910.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: rec:RHECIAT_CH0000812 antibiotic biosynthesis monooxygenase protein YP_002279911.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rec:RHECIAT_CH0000813 methylmalonate-semialdehyde dehydrogenase (acylating) protein YP_002279912.1 PFAM: protein of unknown function DUF898 transmembrane; KEGG: sme:SMc00782 hypothetical protein YP_002279913.1 PFAM: peptidase M48 Ste24p; KEGG: sme:SMc00783 hypothetical protein YP_002279914.1 rhizobial iron regulator; in Sinorhizobium meliloti mutations in this gene affect the expression of a number of iron-responsive operons YP_002279915.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0000815 dipeptide ABC transporter substrate-binding protein YP_002279916.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000816 dipeptide ABC transporter permease YP_002279917.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000817 dipeptide ABC transporter permease YP_002279918.1 KEGG: ret:RHE_CH00739 dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_002279919.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_002279920.1 KEGG: rec:RHECIAT_CH0000820 gluconokinase protein; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_002279921.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0000821 D-amino acid dehydrogenase protein YP_002279922.1 PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: rec:RHECIAT_CH0000822 isoprenylcysteine carboxyl methyltransferase protein YP_002279923.1 PFAM: chalcone and stilbene synthase domain protein; FAE1/type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rec:RHECIAT_CH0000823 probable chalcone synthase protein YP_002279924.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: ret:RHE_CH00745 hypothetical protein YP_002279925.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_CH00746 RNA polymerase sigma factor protein (sigma-24) YP_002279926.1 KEGG: ret:RHE_CH00747 hypothetical protein YP_002279927.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0000827 beta-glycosyltransferase protein YP_002279928.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: rec:RHECIAT_CH0000828 glucose-1-phosphate thymidylyltransferase protein YP_002279929.1 PFAM: WxcM domain protein domain protein; KEGG: rec:RHECIAT_CH0000829 hypothetical protein YP_002279930.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rec:RHECIAT_CH0000830 aminotransferase protein YP_002279931.1 PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0000831 polysaccharide ABC transporter permease YP_002279932.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000832 polysaccharide ABC transporter ATP-binding protein YP_002279933.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rec:RHECIAT_CH0000833 nucleoside-diphosphate-sugar epimerase protein YP_002279934.1 PFAM: nucleotidyl transferase; KEGG: rec:RHECIAT_CH0000834 nucleoside-diphosphate-sugar pyrophosphorylase protein YP_002279935.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rec:RHECIAT_CH0000835 epimerase protein YP_002279936.1 PFAM: radical SAM protein; KEGG: rec:RHECIAT_CH0000836 hypothetical protein YP_002279937.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: rec:RHECIAT_CH0000837 N-acylneuraminate-9-phosphate synthase (sialic acid synthase) protein YP_002279938.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: rec:RHECIAT_CH0000838 acylneuraminate cytidylyltransferase (spore coat polysaccharide biosynthesis) protein YP_002279939.1 KEGG: rec:RHECIAT_CH0000839 glycosyltransferase spore coat polysaccharide biosynthesis protein YP_002279940.1 PFAM: WbqC-like family protein; KEGG: rec:RHECIAT_CH0000840 hypothetical protein YP_002279941.1 PFAM: LmbE family protein; KEGG: rec:RHECIAT_CH0000841 hypothetical protein YP_002279942.1 KEGG: rec:RHECIAT_CH0000842 hypothetical protein YP_002279943.1 KEGG: rec:RHECIAT_CH0000843 hypothetical protein YP_002279944.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0000844 fusion protein: glycosyltransferase and acetyltransferase YP_002279945.1 PFAM: methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: gme:Gmet_2177 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_002279946.1 KEGG: rec:RHECIAT_CH0000845 hypothetical protein YP_002279947.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0000846 hypothetical protein YP_002279948.1 KEGG: rec:RHECIAT_CH0000847 hypothetical protein YP_002279949.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_CH0000849 GDP-mannose 4,6-dehydratase protein YP_002279950.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0000850 probable GDP-L-fucose synthase protein YP_002279951.1 PFAM: Ppx/GppA phosphatase; KEGG: ret:RHE_CH00788 exopolyphosphatase protein YP_002279952.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rec:RHECIAT_CH0000875 ribosomal RNA methyltransferase/cell division protein YP_002279953.1 KEGG: rec:RHECIAT_CH0000876 lactoylglutathione lyase protein YP_002279954.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH00792 probable efflux transporter permease YP_002279955.1 PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0000878 beta-lactamase family protein YP_002279956.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002279957.1 KEGG: ret:RHE_CH00795 hypothetical protein YP_002279958.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH00796 probable transcriptional regulator protein, LysR family YP_002279959.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0000882 probable dehydrogenase protein YP_002279960.1 PFAM: protein of unknown function DUF1123; KEGG: rec:RHECIAT_CH0000883 hypothetical protein YP_002279961.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0000884 probable transcriptional regulator protein, TetR family YP_002279962.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH00800 probable transcriptional regulator protein, LysR family YP_002279963.1 PFAM: protein of unknown function DUF1127; KEGG: rec:RHECIAT_CH0000886 hypothetical protein YP_002279964.1 KEGG: rec:RHECIAT_CH0000887 hypothetical protein YP_002279965.1 KEGG: rec:RHECIAT_CH0000888 gamma-glutamylcysteine synthetase protein; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase YP_002279966.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002279967.1 PFAM: phosphate transporter; KEGG: ret:RHE_CH00805 probable phosphate transport permease YP_002279968.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0000891 NTP pyrophosphohydrolase protein, MuT/NUDIX family YP_002279969.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psb:Psyr_0035 regulatory protein, LysR:LysR, substrate-binding YP_002279970.1 PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; KEGG: tma:TM0172 S-adenosyl-L-homocysteine hydrolase YP_002279971.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: met:M446_1258 alcohol dehydrogenase GroES domain protein YP_002279972.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:bll5543 transcriptional regulatory protein YP_002279973.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0000892 probable transcriptional regulator protein, LysR family YP_002279974.1 PFAM: FAD linked oxidase; KEGG: ret:RHE_CH00808 glycolate oxidase subunit D protein YP_002279975.1 PFAM: FAD linked oxidase; KEGG: rec:RHECIAT_CH0000894 glycolate oxidase protein, subunit E YP_002279976.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ret:RHE_CH00810 glycolate oxidase subunit F protein YP_002279977.1 KEGG: ret:RHE_CH00811 hypothetical protein YP_002279978.1 KEGG: rec:RHECIAT_CH0000897 lipid A oxidase (involved in formation of 2-aminogluconate) protein YP_002279979.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0000898 hypothetical protein YP_002279980.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH00814 hypothetical protein YP_002279981.1 PFAM: methyladenine glycosylase; KEGG: ret:RHE_CH00815 DNA-3-methyladenine glycosylase I protein YP_002279982.1 KEGG: rec:RHECIAT_CH0000901 hypothetical protein YP_002279983.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0000902 hydrolase protein, HAD superfamily YP_002279984.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0000903 aldo/keto reductase protein YP_002279985.1 PFAM: protein of unknown function DUF305; KEGG: rec:RHECIAT_CH0000904 hypothetical protein YP_002279986.1 KEGG: rec:RHECIAT_CH0000905 hypothetical protein YP_002279987.1 KEGG: rec:RHECIAT_CH0000906 hypothetical protein YP_002279988.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002279989.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002279990.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002279991.1 PFAM: DoxX family protein; KEGG: ret:RHE_CH00824 hypothetical conserved membrane protein YP_002279992.1 PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH00825 glutathione S-transferase protein YP_002279993.1 KEGG: rec:RHECIAT_CH0000912 hypothetical protein YP_002279994.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_002279995.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002279996.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0000916 hydrolase protein, HAD superfamily YP_002279997.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002279998.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme YP_002279999.1 KEGG: rec:RHECIAT_CH0000921 hypothetical protein YP_002280000.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rec:RHECIAT_CH0000922 cytosine deaminase protein YP_002280001.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rec:RHECIAT_CH0000923 probable RNA-pseudouridine synthase protein, ribosomal large subunit B YP_002280002.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: rec:RHECIAT_CH0000924 methylase protein YP_002280003.1 PFAM: patatin; KEGG: rec:RHECIAT_CH0000925 hydrolase protein YP_002280004.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator YP_002280005.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bur:Bcep18194_B1242 NADH-flavin oxidoreductase/NADH oxidase YP_002280006.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bpt:Bpet0022 hypothetical protein YP_002280007.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: rec:RHECIAT_CH0000928 glutathione-regulated potassium-efflux transporter YP_002280008.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rec:RHECIAT_CH0000929 modulator of DNA gyrase protein YP_002280009.1 PFAM: inositol monophosphatase; KEGG: ret:RHE_CH00842 probable inositol monophosphatase protein YP_002280010.1 KEGG: rec:RHECIAT_CH0000931 hypothetical protein YP_002280011.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_002280012.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: ret:RHE_CH00845 probable phosphoglycolate phosphatase protein YP_002280013.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_002280014.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: xau:Xaut_0172 GntR family transcriptional regulator YP_002280015.1 PFAM: inner-membrane translocator; KEGG: gtn:GTNG_1814 ribose ABC transporter (permease) YP_002280016.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: acr:Acry_1972 ABC transporter YP_002280017.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV5704 sugar ABC transporter substrate-binding protein YP_002280018.1 KEGG: rec:RHECIAT_CH0000936 hypothetical protein YP_002280019.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002280020.1 KEGG: rec:RHECIAT_CH0000938 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002280021.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ret:RHE_CH00850 sensory box/GGDEF family protein YP_002280022.1 PFAM: PRC-barrel domain protein; KEGG: rec:RHECIAT_CH0000940 hypothetical protein YP_002280023.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: rec:RHECIAT_CH0000941 probable gluconolactonase protein YP_002280024.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_002280025.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: rec:RHECIAT_CH0000943 2-dehydro-3-deoxygalactonokinase protein YP_002280026.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0000944 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002280027.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: rec:RHECIAT_CH0000945 transcriptional regulator protein, IclR family YP_002280028.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; Bacterio-opsin activator HTH domain protein; KEGG: ret:RHE_CH00857 probable transcriptional regulator protein, LuxR family YP_002280029.1 PFAM: protein of unknown function DUF59; KEGG: rec:RHECIAT_CH0000949 hypothetical protein YP_002280030.1 PFAM: Mg2 transporter CorA family protein; KEGG: ret:RHE_CH00860 magnesium/cobalt transporter YP_002280031.1 PFAM: K potassium transporter; KEGG: rec:RHECIAT_CH0000951 potassium transporter YP_002280032.1 PFAM: transposase IS4 family protein; KEGG: ret:RHE_PA00071 probable insertion sequence transposase protein, IS4 family YP_002280033.1 PFAM: cell wall hydrolase SleB; KEGG: ret:RHE_CH00862 cell wall hydrolase protein involved in spore germination YP_002280034.1 KEGG: rec:RHECIAT_CH0000953 ATP synthase protein, subunit I YP_002280035.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002280036.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_002280037.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel. YP_002280038.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002280039.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002280040.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rec:RHECIAT_CH0000959 radical SAM protein YP_002280041.1 KEGG: rec:RHECIAT_CH0000960 glycosyltransferase protein YP_002280042.1 KEGG: ret:RHE_CH00871 hypothetical protein YP_002280043.1 TIGRFAM: molybdenum cofactor synthesis protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: ret:RHE_CH00872 molybdenum cofactor biosynthesis protein YP_002280044.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002280045.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: rec:RHECIAT_CH0000964 hypothetical protein YP_002280046.1 PFAM: polyprenyl synthetase; KEGG: rec:RHECIAT_CH0000965 octaprenyl-diphosphate synthase protein YP_002280047.1 KEGG: ret:RHE_CH00876 hypothetical protein YP_002280048.1 PFAM: methyltransferase small; KEGG: rec:RHECIAT_CH0000967 methyltransferase protein YP_002280049.1 TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: ret:RHE_CH00878 manganese transporter MntH YP_002280050.1 PFAM: peptidase S49; KEGG: ret:RHE_CH00879 protease protein YP_002280051.1 KEGG: rec:RHECIAT_CH0000970 hypothetical protein YP_002280052.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002280053.1 KEGG: rec:RHECIAT_CH0000973 hypothetical protein YP_002280054.1 KEGG: rec:RHECIAT_CH0000973 hypothetical protein YP_002280055.1 PFAM: LemA family protein; KEGG: rec:RHECIAT_CH0000974 hypothetical protein YP_002280056.1 KEGG: rec:RHECIAT_CH0000975 3-phosphoshikimate 1-carboxyvinyltransferase protein; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_002280057.1 KEGG: ret:RHE_CH00885 hypothetical protein YP_002280058.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002280059.1 KEGG: rec:RHECIAT_CH0000978 hypothetical protein YP_002280060.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: ret:RHE_CH00888 methyl-accepting chemotaxis protein YP_002280061.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002280062.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: rec:RHECIAT_CH0000981 probable transcriptional accessory protein (RNA binding S1 domain) YP_002280063.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: ret:RHE_CH00892 cyclopropane-fatty-acyl-phospholipid synthase protein YP_002280064.1 PFAM: phosphoglycerate mutase; KEGG: rec:RHECIAT_CH0000983 probable phosphoglycerate mutase protein YP_002280065.1 PFAM: MltA-interacting MipA family protein; KEGG: rec:RHECIAT_CH0000984 outer membrane scaffold protein, MipA family YP_002280066.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_002280067.1 KEGG: rec:RHECIAT_CH0000987 hypothetical protein YP_002280068.1 PFAM: protein of unknown function DUF1217; KEGG: rec:RHECIAT_CH0000988 hypothetical protein YP_002280069.1 PFAM: FAD linked oxidase; KEGG: rec:RHECIAT_CH0000989 probable FAD-dependent oxidoreductase protein YP_002280070.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: rec:RHECIAT_CH0000990 probable translation factor protein YP_002280071.1 KEGG: rec:RHECIAT_CH0000991 hypothetical protein YP_002280072.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rec:RHECIAT_CH0000993 probable dioxygenase protein YP_002280073.1 PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0000994 hypothetical protein YP_002280074.1 PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_CH0000995 hypothetical protein YP_002280075.1 PFAM: transposase IS4 family protein; KEGG: ret:RHE_PA00071 probable insertion sequence transposase protein, IS4 family YP_002280077.1 PFAM: Mg2 transporter CorA family protein; KEGG: ret:RHE_CH00904 probable magnesium and cobalt transporter YP_002280078.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_CH00905 probable acyl-CoA dehydrogenase protein YP_002280079.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002280080.1 KEGG: ret:RHE_CH00907 hypothetical protein YP_002280081.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001000 probable oxidoreductase protein YP_002280082.1 PFAM: helix-turn-helix HxlR type; KEGG: rec:RHECIAT_CH0001001 transcriptional regulator protein YP_002280083.1 PFAM: (uracil-5)-methyltransferase; KEGG: rec:RHECIAT_CH0001002 23S rRNA (uracil-5-)-methyltransferase protein YP_002280084.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: rec:RHECIAT_CH0001003 hemolysin protein YP_002280085.1 KEGG: mlo:mll1459 hypothetical protein YP_002280086.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; CHASE3 domain protein; KEGG: ret:RHE_CH00912 methyl-accepting chemotaxis protein YP_002280087.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002280088.1 KEGG: rec:RHECIAT_CH0001006 hypothetical protein YP_002280089.1 PFAM: pirin; KEGG: ret:RHE_CH00914 hypothetical protein YP_002280090.1 KEGG: bam:Bamb_5223 hypothetical protein YP_002280091.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001008 short-chain dehydrogenase protein YP_002280092.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002280093.1 PFAM: histone deacetylase superfamily; KEGG: rec:RHECIAT_CH0001010 probable deacetylase protein YP_002280094.1 KEGG: rec:RHECIAT_CH0001011 thioesterase YP_002280095.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_CH00919 transcriptional regulator (activator) protein, AsnC/GntR family YP_002280096.1 PFAM: Malonyl-CoA decarboxylase; KEGG: ret:RHE_CH00920 malonyl-CoA decarboxylase protein YP_002280097.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_002280098.1 PFAM: citrate transporter; dicarboxylate carrier MatC domain protein; KEGG: ret:RHE_CH00922 dicarboxylate-carrier protein YP_002280099.1 PFAM: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0001016 probable transcriptional regulator protein, LuxR family YP_002280100.1 KEGG: rec:RHECIAT_CH0001021 hypothetical protein YP_002280101.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_002280102.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001023 probable transcriptional regulator protein, LysR family YP_002280103.1 PFAM: acyltransferase 3; KEGG: ret:RHE_CH00927 acetyltransferase protein YP_002280104.1 PFAM: BioY protein; KEGG: ret:RHE_CH00928 biotin transporter YP_002280105.1 PFAM: cobalt transporter; KEGG: ret:RHE_CH00929 biotin transporter permease YP_002280106.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001027 probable cobalt/biotin ABC transporter ATP-binding protein YP_002280107.1 PFAM: protein of unknown function DUF1006; KEGG: rec:RHECIAT_CH0001029 hypothetical protein YP_002280108.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: rec:RHECIAT_CH0001030 GTP cyclohydrolase II protein (riboflavin biosynthesis) YP_002280109.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002280110.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; hypothetical protein; KEGG: mlo:mlr2027 hypothetical protein YP_002280111.1 PFAM: protein of unknown function DUF1344; KEGG: rec:RHECIAT_CH0001032 hypothetical protein YP_002280112.1 PFAM: Domain of unknown function DUF1902; KEGG: rec:RHECIAT_CH0001033 hypothetical protein YP_002280113.1 PFAM: phosphoglycerate mutase; KEGG: rec:RHECIAT_CH0001034 phosphoglycerate mutase protein YP_002280114.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002280115.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rec:RHECIAT_CH0001036 molecular chaperone protein DnaJ YP_002280116.1 KEGG: ret:RHE_CH00940 hypothetical protein YP_002280117.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_002280118.1 PFAM: polysaccharide deacetylase; KEGG: rec:RHECIAT_CH0001039 polysaccharide deacetylase protein YP_002280119.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; sporulation domain protein; KEGG: rec:RHECIAT_CH0001040 D-alanyl-D-alanine carboxypeptidase protein YP_002280120.1 KEGG: rec:RHECIAT_CH0001041 hypothetical protein YP_002280121.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001044 probable acetyltransferase protein YP_002280122.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ret:RHE_CH00950 Zn-dependent protease protein YP_002280124.1 PFAM: invasion associated locus B family protein; KEGG: ret:RHE_CH00951 hypothetical protein YP_002280125.1 KEGG: rec:RHECIAT_CH0001047 cytochrome C oxidase protein, subunit II; TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region YP_002280126.1 KEGG: rec:RHECIAT_CH0001048 cytochrome C oxidase protein, subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_002280127.1 converts protoheme IX and farnesyl diphosphate to heme O YP_002280128.1 KEGG: rec:RHECIAT_CH0001050 hypothetical protein YP_002280129.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_002280130.1 PFAM: cytochrome C oxidase subunit III; KEGG: rec:RHECIAT_CH0001052 cytochrome C oxidase protein, subunit III YP_002280131.1 PFAM: chloramphenicol phosphotransferase family protein; KEGG: ret:RHE_CH00958 probable chloranphenicol phosphotransferase protein YP_002280132.1 PFAM: protein of unknown function DUF983; KEGG: ret:RHE_CH00959 hypothetical protein YP_002280133.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0001055 transmembrane cytochrome oxidase complex biogenesis protein YP_002280134.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002280135.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_002280136.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002280137.1 PFAM: NUDIX hydrolase; KEGG: atu:Atu3719 MutT/NUDIX family protein YP_002280138.1 KEGG: rec:RHECIAT_CH0001059 hypothetical protein YP_002280139.1 PFAM: CsbD family protein; KEGG: rec:RHECIAT_CH0001060 hypothetical protein YP_002280140.1 PFAM: protein of unknown function DUF179; KEGG: rec:RHECIAT_CH0001061 transcriptional regulator protein YP_002280141.1 KEGG: ret:RHE_CH00967 hypothetical protein YP_002280142.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: ret:RHE_CH00968 probable peroxiredoxin protein YP_002280144.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001066 probable zinc ABC transporter ATP-binding protein YP_002280145.1 PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0001067 probable zinc ABC transporter permease YP_002280146.1 PFAM: periplasmic solute binding protein; KEGG: ret:RHE_CH00971 probable zinc ABC transporter substrate-binding protein YP_002280147.1 KEGG: xfa:XF2758 hypothetical protein YP_002280148.1 PFAM: stress responsive alpha-beta barrel domain protein; KEGG: ret:RHE_CH00973 hypothetical protein YP_002280149.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ret:RHE_CH00974 methyl-accepting chemotaxis protein YP_002280150.1 KEGG: rec:RHECIAT_CH0001070 hypothetical protein YP_002280151.1 KEGG: mlo:mlr7940 hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20 YP_002280152.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002280153.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_002280154.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: smd:Smed_5075 AsnC family transcriptional regulator YP_002280155.1 KEGG: rec:RHECIAT_CH0001071 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; hypothetical protein; SMART: PAC repeat-containing protein YP_002280156.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001072 ribosomal-protein-alanine N-acetyltransferase protein YP_002280157.1 PFAM: peptidase M16 domain protein; KEGG: rec:RHECIAT_CH0001073 probable processing peptidase protein YP_002280158.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002280159.1 KEGG: rec:RHECIAT_CH0001076 hypothetical protein YP_002280160.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH00986 probable hydrolase phosphatase protein YP_002280161.1 SMART: helix-turn-helix domain protein; KEGG: cbd:COXBU7E912_A0056 DNA-binding protein YP_002280162.1 PFAM: protein of unknown function DUF1044; KEGG: sbn:Sbal195_0793 protein of unknown function DUF1044 YP_002280163.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: atu:Atu3330 methyl-accepting chemotaxis protein YP_002280164.1 KEGG: ret:RHE_CH00989 hypothetical protein YP_002280165.1 KEGG: ret:RHE_CH00990 hypothetical protein YP_002280166.1 KEGG: rec:RHECIAT_CH0001080 hypothetical protein YP_002280169.1 SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0001081 transcriptional regulator protein YP_002280170.1 PFAM: NIPSNAP family containing protein; KEGG: ret:RHE_CH00993 hypothetical protein YP_002280171.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: rec:RHECIAT_CH0001083 antibiotic biosynthesis monooxygenase protein YP_002280172.1 PFAM: DNA methylase N-4/N-6; KEGG: ret:RHE_CH00995 site-specific DNA-methyltransferase (adenine-specific) protein YP_002280173.1 KEGG: rec:RHECIAT_CH0001085 hypothetical protein YP_002280174.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: rec:RHECIAT_CH0001086 probable 2-haloacid dehalogenase protein YP_002280175.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: rec:RHECIAT_CH0001087 A/G-specific adenine glycosylase protein YP_002280176.1 PFAM: protein of unknown function DUF1159; KEGG: rec:RHECIAT_CH0001088 hypothetical protein YP_002280178.1 PFAM: DSBA oxidoreductase; KEGG: rec:RHECIAT_CH0001093 thiol-disulfide oxidoreductase protein YP_002280179.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: rec:RHECIAT_CH0001094 chromosome partition protein YP_002280180.1 KEGG: rec:RHECIAT_CH0001095 hypothetical protein YP_002280181.1 PFAM: toxic anion resistance family protein; KEGG: rec:RHECIAT_CH0001096 tellurite resistance (toxic anion resistance) protein YP_002280182.1 KEGG: rec:RHECIAT_CH0001097 hypothetical protein YP_002280183.1 PFAM: aminoglycoside phosphotransferase; KEGG: bra:BRADO6511 phosphotransferase enzyme family YP_002280184.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002280185.1 KEGG: ret:RHE_CH01004 hypothetical protein YP_002280186.1 KEGG: rec:RHECIAT_CH0001103 hypothetical protein YP_002280187.1 KEGG: ret:RHE_CH01005 hypothetical protein YP_002280188.1 KEGG: ret:RHE_CH01006 hypothetical protein YP_002280189.1 KEGG: rec:RHECIAT_CH0001107 hypothetical protein YP_002280190.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: hne:HNE_3446 ISHne3, transposase YP_002280191.1 PFAM: saccharopine dehydrogenase; KEGG: rec:RHECIAT_CH0001108 hypothetical protein YP_002280192.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: ret:RHE_CH01012 hypothetical protein YP_002280193.1 PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0001110 probable beta-lactamase family protein YP_002280194.1 KEGG: rpa:RPA1728 hypothetical protein YP_002280195.1 PFAM: transposase IS3/IS911 family protein; KEGG: ret:RHE_PD00313 probable insertion sequence transposase protein YP_002280196.1 PFAM: Integrase catalytic region; KEGG: atc:AGR_L_547 hypothetical protein YP_002280197.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH01018 probable oxidoreducatse protein YP_002280198.1 KEGG: rec:RHECIAT_CH0001118 probable transcriptional regulator protein, TetR family YP_002280199.1 PFAM: PspA/IM30 family protein; KEGG: ret:RHE_CH01020 negative regulator protein PspA (suppresses sigma54-dependent transcription) YP_002280200.1 PFAM: YiaAB two helix domain protein; KEGG: rec:RHECIAT_CH0001120 hypothetical protein YP_002280201.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein YP_002280202.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_2477 glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) YP_002280203.1 PFAM: regulatory protein TetR; KEGG: pin:Ping_1790 transcriptional regulator of TetR family protein YP_002280204.1 PFAM: general substrate transporter; protein of unknown function DUF895, eukaryotic; major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01023 tetracycline efflux transporter YP_002280206.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0001125 probable phosphoglycerate dehydrogenase protein YP_002280207.1 KEGG: ret:RHE_CH01025 hypothetical protein YP_002280209.1 PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_CH0001129 hypothetical protein YP_002280210.1 KEGG: rec:RHECIAT_CH0001130 hypothetical protein YP_002280211.1 KEGG: rec:RHECIAT_CH0001131 hypothetical protein YP_002280212.1 KEGG: ret:RHE_CH01032 hypothetical protein YP_002280213.1 KEGG: ret:RHE_CH01033 hypothetical protein YP_002280214.1 KEGG: rec:RHECIAT_CH0001134 hypothetical protein YP_002280215.1 KEGG: rec:RHECIAT_CH0001135 hypothetical protein YP_002280216.1 KEGG: rec:RHECIAT_CH0001136 hypothetical protein YP_002280217.1 KEGG: ret:RHE_CH01036 hypothetical protein YP_002280218.1 KEGG: smd:Smed_0126 GcrA cell cycle regulator YP_002280219.1 PFAM: regulatory protein LuxR; KEGG: ret:RHE_CH01037 transcriptional regulator protein, LuxR family YP_002280220.1 KEGG: rec:RHECIAT_CH0001139 hypothetical protein YP_002280221.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: rha:RHA1_ro06721 hypothetical protein YP_002280222.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rec:RHECIAT_CH0003680 purine deaminase protein YP_002280223.1 PFAM: protein of unknown function DUF805; KEGG: psa:PST_0752 membrane protein YP_002280224.1 PFAM: glycosyl transferase family 25; KEGG: ret:RHE_CH01041 glycosyltransferase protein YP_002280225.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH01042 probable two-component sensor histidine kinase protein YP_002280226.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ret:RHE_CH01043 probable two-component response regulator protein YP_002280228.1 PFAM: hypothetical protein; transcriptional regulator domain protein; hypothetical protein; SMART: hypothetical protein; KEGG: smd:Smed_4280 transcriptional regulator domain protein YP_002280229.1 PFAM: ethyl tert-butyl ether degradation EthD; KEGG: sme:SMa0412 hypothetical protein YP_002280231.1 KEGG: rec:RHECIAT_CH0000573 hypothetical protein YP_002280232.1 KEGG: smd:Smed_5273 hypothetical protein YP_002280233.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: swi:Swit_0489 bifunctional deaminase-reductase domain protein YP_002280234.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: ret:RHE_CH02028 probable saccharide ABC transporter ATP-binding protein YP_002280235.1 PFAM: DinB family protein; KEGG: sil:SPO3281 DinB family protein YP_002280236.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: rec:RHECIAT_PA0000051 adenylate cyclase protein YP_002280238.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sme:SMc01715 hypothetical protein YP_002280239.1 PFAM: endoribonuclease L-PSP; KEGG: sme:SMc01714 hypothetical protein YP_002280240.1 SMART: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0001174 probable transcriptional regulator protein, ArsR family YP_002280241.1 PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: rec:RHECIAT_CH0001175 probable 3-oxoacyl-[acyl-carrier protein] reductase protein YP_002280242.1 KEGG: ret:RHE_CH01073 hypothetical protein YP_002280243.1 KEGG: rec:RHECIAT_CH0001182 hypothetical protein YP_002280244.1 PFAM: protein of unknown function DUF937; KEGG: ret:RHE_CH01088 hypothetical protein YP_002280245.1 PFAM: dienelactone hydrolase; KEGG: rec:RHECIAT_CH0001184 hydrolase protein YP_002280246.1 KEGG: ret:RHE_CH01091 hypothetical protein YP_002280247.1 KEGG: ret:RHE_CH01092 terminase small subunit YP_002280248.1 KEGG: ret:RHE_CH01093 terminase large subunit YP_002280249.1 KEGG: ret:RHE_CH01094 hypothetical protein YP_002280250.1 KEGG: ret:RHE_CH01095 hypothetical protein YP_002280251.1 KEGG: ret:RHE_CH01096 hypothetical protein YP_002280252.1 KEGG: ret:RHE_CH01097 hypothetical protein YP_002280253.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: olu:OSTLU_8502 predicted protein YP_002280254.1 KEGG: ret:RHE_CH01097 hypothetical protein YP_002280255.1 KEGG: ret:RHE_CH01098 hypothetical protein YP_002280256.1 KEGG: ret:RHE_CH01099 hypothetical protein YP_002280257.1 KEGG: ret:RHE_CH01100 hypothetical protein YP_002280258.1 KEGG: bpd:BURPS668_A2344 hypothetical protein YP_002280259.1 KEGG: ret:RHE_CH01102 hypothetical protein YP_002280260.1 KEGG: ret:RHE_CH01103 hypothetical protein YP_002280261.1 KEGG: bmt:BSUIS_A0256 peptidoglycan hydrolase FlgJ YP_002280262.1 KEGG: bmt:BSUIS_A0257 elastin precursor YP_002280263.1 KEGG: ret:RHE_CH01106 hypothetical protein YP_002280264.1 KEGG: bbr:BB1712 phage-related hypothetical protein YP_002280266.1 KEGG: cch:Cag_0670 hypothetical protein YP_002280267.1 PFAM: acyltransferase 3; KEGG: rec:RHECIAT_CH0004112 acyltransferase protein YP_002280268.1 PFAM: methyltransferase type 11; KEGG: ret:RHE_CH01108 hypothetical protein YP_002280269.1 PFAM: acyltransferase 3; KEGG: rec:RHECIAT_CH0001186 acyltransferase protein YP_002280270.1 KEGG: ret:RHE_CH01105 hypothetical protein YP_002280271.1 KEGG: rsq:Rsph17025_0448 hypothetical protein YP_002280272.1 PFAM: glycoside hydrolase family 24; KEGG: oan:Oant_2287 glycoside hydrolase family 24 YP_002280273.1 KEGG: rec:RHECIAT_CH0001189 hypothetical protein YP_002280274.1 KEGG: rec:RHECIAT_CH0001190 hypothetical protein YP_002280275.1 KEGG: rec:RHECIAT_CH0001191 hypothetical protein YP_002280276.1 KEGG: rec:RHECIAT_CH0001192 hypothetical protein YP_002280277.1 KEGG: rec:RHECIAT_CH0001193 hypothetical protein YP_002280278.1 KEGG: rec:RHECIAT_CH0001194 hypothetical protein YP_002280279.1 KEGG: smd:Smed_1340 hypothetical protein YP_002280281.1 KEGG: atu:Atu0470 hypothetical protein YP_002280284.1 KEGG: ret:RHE_CH01120 serine protease DO-like protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_002280285.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0001198 probable transcriptional regulator protein, LacI family YP_002280286.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH01122 probable transcriptional regulator protein, LysR family YP_002280287.1 PFAM: NmrA family protein; KEGG: rec:RHECIAT_CH0001200 hypothetical protein YP_002280288.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: ret:RHE_CH01126 penicillin binding protein B YP_002280289.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: ret:RHE_CH01127 hypothetical protein YP_002280290.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ YP_002280291.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002280292.1 KEGG: rec:RHECIAT_CH0001213 phosphoadenosine-phosphosulfate reductase protein; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase YP_002280293.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ret:RHE_CH01133 transcriptional regulator protein YP_002280294.1 PFAM: chloride channel core; KEGG: atc:AGR_C_1521 hypothetical protein YP_002280295.1 KEGG: mar:MAE_25760 hypothetical protein YP_002280296.1 KEGG: eba:ebA7092 hypothetical protein, predicted transcription regulator YP_002280297.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_002280298.1 catalyzes the formation of betaine from betaine aldehyde YP_002280299.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_002280300.1 KEGG: ret:RHE_CH01139 hypothetical protein YP_002280301.1 PFAM: protein of unknown function UPF0156; KEGG: rec:RHECIAT_CH0001223 hypothetical protein YP_002280302.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: ret:RHE_CH01141 probable quinone oxidoreductase protein YP_002280303.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01143 transporter permease YP_002280304.1 PFAM: L-asparaginase II; KEGG: rec:RHECIAT_CH0001230 L-asparaginase II protein YP_002280305.1 PFAM: regulatory protein DeoR; KEGG: rec:RHECIAT_CH0001231 probable transcriptional regulator protein, DeoR family YP_002280306.1 KEGG: rec:RHECIAT_CH0001232 hypothetical protein YP_002280307.1 PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01147 glutathione S-transferase protein YP_002280308.1 PFAM: protein of unknown function DUF661; KEGG: mlo:mlr3218 hypothetical protein YP_002280309.1 PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001098 probable glutathione S-transferase protein YP_002280310.1 KEGG: rec:RHECIAT_CH0001236 hypothetical protein YP_002280311.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000330 acetyltransferase protein YP_002280312.1 KEGG: rec:RHECIAT_CH0001237 hypothetical protein YP_002280313.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001238 probable transcriptional regulator protein, LysR family YP_002280314.1 PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001239 glutathione S-transferase protein YP_002280315.1 KEGG: rec:RHECIAT_CH0001243 hypothetical protein YP_002280316.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: rec:RHECIAT_CH0001244 sensory box/GGDEF family protein YP_002280317.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: rec:RHECIAT_CH0001245 probable transcriptional regulator protein, LuxR family YP_002280318.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; 5TM Receptors of the LytS-YhcK type transmembrane region; hypothetical protein; KEGG: ret:RHE_PF00417 hypothetical protein YP_002280319.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rec:RHECIAT_CH0001247 glycerophosphoryl diester phosphodiesterase protein YP_002280320.1 PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0001248 peroxidase protein YP_002280321.1 KEGG: rec:RHECIAT_CH0001249 exonuclease protein involved in mRNA processing YP_002280322.1 KEGG: ret:RHE_CH03459 cell cycle protein MesJ/cytosine deaminase-related protein YP_002280323.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA YP_002280324.1 KEGG: ret:RHE_CH01165 aminopeptidase protein YP_002280325.1 KEGG: rec:RHECIAT_CH0001252 hypothetical protein YP_002280326.1 PFAM: Domain of unknown function DUF1814; KEGG: rec:RHECIAT_CH0001253 hypothetical protein YP_002280327.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH01167 hypothetical protein YP_002280328.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0001255 hypothetical protein YP_002280329.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ret:RHE_CH01169 cold shock protein YP_002280330.1 KEGG: ret:RHE_CH01170 hypothetical protein YP_002280331.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002280332.1 KEGG: rec:RHECIAT_CH0001259 hypothetical protein YP_002280333.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0001260 probable transcriptional regulator protein, MarR family YP_002280334.1 PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0001261 probable organic hydroperoxide resistance (osmotically inducible) protein YP_002280335.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH01175 probable transcriptional regulator protein, MarR family YP_002280336.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rec:RHECIAT_CH0001263 hypothetical protein YP_002280337.1 PFAM: protein of unknown function DUF1579; KEGG: rec:RHECIAT_CH0001264 hypothetical protein YP_002280338.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH01178 glyoxalase protein YP_002280339.1 PFAM: porin; KEGG: atc:AGR_C_3918 hypothetical protein YP_002280340.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001266 probable ABC transporter ATP-binding protein YP_002280341.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: hne:HNE_3446 ISHne3, transposase YP_002280342.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH01180 probable ABC transporter ATP-binding protein YP_002280343.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: rec:RHECIAT_CH0001269 ATP-binding protein YP_002280344.1 KEGG: ret:RHE_CH01182 hypothetical protein YP_002280345.1 KEGG: rec:RHECIAT_CH0001272 hypothetical protein YP_002280346.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002280347.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate YP_002280348.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter; KEGG: rec:RHECIAT_CH0001275 hemolysin protein YP_002280349.1 PFAM: cupin; KEGG: ret:RHE_CH01188 hypothetical protein YP_002280350.1 PFAM: xylose isomerase; KEGG: bbt:BBta_6463 hypothetical protein YP_002280351.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0001280 probable alcohol dehydrogenase protein YP_002280352.1 PFAM: aminotransferase class IV; KEGG: ret:RHE_CH01190 aminotransferase YP_002280353.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001283 probable transcriptional regulator protein, LysR family YP_002280354.1 PFAM: secretion protein HlyD; KEGG: ret:RHE_CH01192 probable multidrug resistance efflux system protein YP_002280355.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01193 probable multidrug resistance efflux system protein YP_002280356.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH01194 probable adenylate cyclase protein YP_002280357.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002280358.1 PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01196 probable glutathione S-transferase protein YP_002280359.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_CH01197 probable transcriptional regulator protein, TetR family YP_002280360.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01198 probable multi-drug resistance efflux system protein YP_002280361.1 KEGG: ret:RHE_CH01199 hypothetical protein YP_002280362.1 PFAM: protein of unknown function DUF81; KEGG: rec:RHECIAT_CH0001292 hypothetical conserved membrane protein YP_002280363.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0001293 phosphatidylethanolamine N-methyltransferase protein YP_002280364.1 KEGG: ret:RHE_CH01202 hypothetical protein YP_002280365.1 PFAM: manganese and iron superoxide dismutase; KEGG: rec:RHECIAT_CH0001295 superoxide dismutase protein YP_002280366.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: atc:AGR_C_1388 hypothetical protein YP_002280367.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0001296 probable phosphatase protein YP_002280368.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0001297 transcriptional regulator protein YP_002280369.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0001298 amino acid efflux protein, LysE family YP_002280370.1 PFAM: cytochrome C prime; KEGG: rec:RHECIAT_CH0001303 cytochrome C556 signal peptide protein YP_002280371.1 KEGG: rec:RHECIAT_CH0001304 diheme cytochrome C signal peptide protein YP_002280372.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001305 acetyltransferase protein YP_002280373.1 PFAM: protein of unknown function DUF156; KEGG: rec:RHECIAT_CH0001306 hypothetical protein YP_002280374.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rec:RHECIAT_CH0001307 probable cation efflux system protein YP_002280375.1 PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0001308 beta-lactamase protein YP_002280376.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: pyrrolo-quinoline quinone; KEGG: rec:RHECIAT_CH0001309 glucose dehydrogenase (pyrroloquinoline-quinone) protein YP_002280377.1 PFAM: protein of unknown function UPF0061; KEGG: rec:RHECIAT_CH0001310 hypothetical protein YP_002280378.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001311 probable efflux transporter YP_002280379.1 PFAM: protein of unknown function DUF1697; KEGG: ret:RHE_CH01225 hypothetical protein YP_002280380.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: rec:RHECIAT_CH0001313 protease II protein YP_002280381.1 PFAM: protein of unknown function DUF930; KEGG: rec:RHECIAT_CH0001314 hypothetical protein YP_002280382.1 PFAM: polysaccharide deacetylase; KEGG: rec:RHECIAT_CH0001315 polysaccharide deacetylase protein YP_002280383.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0001316 sarcosine oxidase protein YP_002280384.1 PFAM: protein of unknown function UPF0118; KEGG: ret:RHE_CH01230 permease YP_002280385.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0001319 glyoxylase protein YP_002280386.1 PFAM: UspA domain protein; KEGG: rec:RHECIAT_CH0001320 probable universal stress protein YP_002280387.1 PFAM: Hly-III family protein; KEGG: rec:RHECIAT_CH0001321 hemolysin III protein YP_002280388.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001322 probable phosphinothricin acetyltransferase (antibiotic resistance) protein YP_002280389.1 PFAM: pentapeptide repeat protein; KEGG: rec:RHECIAT_CH0001323 hypothetical protein YP_002280390.1 PFAM: transposase IS4 family protein; KEGG: ret:RHE_PA00071 probable insertion sequence transposase protein, IS4 family YP_002280391.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_L_1212gl hypothetical protein YP_002280392.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_002280393.1 KEGG: rec:RHECIAT_CH0001337 hypothetical protein YP_002280394.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_002280395.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport YP_002280396.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_002280397.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_002280398.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_002280399.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_002280400.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_002280401.1 PFAM: ROSMUCR transcriptional regulator; KEGG: ret:RHE_CH01249 transcriptional regulator protein - nodulation competitiveness determinant YP_002280402.1 PFAM: Fe-S metabolism associated SufE; KEGG: rec:RHECIAT_CH0001346 Fe-S metabolism associated protein YP_002280403.1 KEGG: rec:RHECIAT_CH0001347 hypothetical protein YP_002280404.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0001348 probable two-component sensor histidine kinase protein YP_002280405.1 PFAM: peptidoglycan-binding protein; KEGG: rec:RHECIAT_CH0001349 peptidoglycan binding (cell wall degradation) protein YP_002280406.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr1976 probable transcriptional regulator YP_002280407.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbe:Cbei_3311 short-chain dehydrogenase/reductase SDR YP_002280408.1 PFAM: protein of unknown function DUF1491; KEGG: rec:RHECIAT_CH0001351 hypothetical protein YP_002280409.1 KEGG: rec:RHECIAT_CH0001352 hypothetical protein YP_002280410.1 KEGG: rec:RHECIAT_CH0000181 hypothetical protein YP_002280412.1 KEGG: ret:RHE_CH01259 hypothetical conserved membrane protein YP_002280413.1 PFAM: protein of unknown function DUF1214; KEGG: rec:RHECIAT_CH0001356 hypothetical conserved membrane protein YP_002280414.1 KEGG: ret:RHE_CH01261 cell wall biosynthesis penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_002280415.1 PFAM: protein of unknown function UPF0153; KEGG: rec:RHECIAT_CH0001358 hypothetical protein YP_002280416.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_CH01263 probable transcriptional regulator protein, TetR family YP_002280417.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH01264 short chain dehydrogenase YP_002280418.1 PFAM: fatty acid desaturase; KEGG: rec:RHECIAT_CH0001361 probable fatty acid desaturase protein YP_002280420.1 KEGG: ret:RHE_CH01265 hypothetical protein YP_002280421.1 PFAM: major facilitator superfamily MFS_1; KEGG: vei:Veis_0772 major facilitator superfamily MFS_1 YP_002280422.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_03619 transcriptional regulator YP_002280423.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0001366 probable lactoylglutathione lyase protein YP_002280424.1 PFAM: semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rfr:Rfer_2534 NADP oxidoreductase, coenzyme F420-dependent YP_002280425.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_I0388 LysR family transcriptional regulator YP_002280426.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: rec:RHECIAT_CH0001367 probable serine protease protein YP_002280427.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rec:RHECIAT_CH0001368 probable transcriptional regulator protein, GntR family YP_002280428.1 PFAM: protein of unknown function DUF983; KEGG: ret:RHE_CH01276 hypothetical protein YP_002280429.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001370 transcriptional regulator protein, LysR family YP_002280430.1 PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01278 glutathione S-transferase protein YP_002280431.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_CH0001372 pyridoxine 5'-phosphate oxidase protein YP_002280432.1 PFAM: protein of unknown function DUF1348; KEGG: rec:RHECIAT_CH0001373 hypothetical protein YP_002280433.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0001374 probable transcriptional regulator protein, TetR family YP_002280434.1 KEGG: rec:RHECIAT_CH0001376 hypothetical protein YP_002280435.1 PFAM: stress responsive alpha-beta barrel domain protein; KEGG: ret:RHE_CH01283 hypothetical protein YP_002280436.1 KEGG: ret:RHE_CH01285 hypothetical protein YP_002280437.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ret:RHE_CH01286 two-component response regulator protein YP_002280438.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0001382 two-component sensor histidine kinase protein YP_002280439.1 KEGG: rec:RHECIAT_CH0001383 outer membrane lipoprotein-related protein YP_002280440.1 TIGRFAM: cytochrome C biogenesis protein CcmI; PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0001384 cytochrome c biogenesis protein YP_002280441.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome C maturation system; periplasmic protein anchored to the inner membrane YP_002280442.1 TIGRFAM: cytochrome C biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: rec:RHECIAT_CH0001386 cytochrome C biosynthesis protein YP_002280443.1 PFAM: cytochrome C biogenesis protein; KEGG: rec:RHECIAT_CH0001387 cytochrome C biogenesis protein YP_002280444.1 KEGG: rec:RHECIAT_CH0001388 serine protease Do protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_002280445.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ret:RHE_CH01294 two-component response regulator protein YP_002280446.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0001390 two-component sensor histidine kinase protein YP_002280447.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_002280448.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_PB0000150 probable transcriptional regulator protein, AraC family YP_002280449.1 KEGG: rec:RHECIAT_CH0001392 probable two-component sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; SMART: PAC repeat-containing protein YP_002280450.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: rec:RHECIAT_CH0001393 aminopeptidase N protein YP_002280451.1 PFAM: chemotaxis sensory transducer; KEGG: met:M446_3313 methyl-accepting chemotaxis sensory transducer YP_002280452.1 PFAM: protein of unknown function DUF6 transmembrane; nucleotide-sugar transporter; KEGG: rec:RHECIAT_CH0001395 permease protein YP_002280453.1 KEGG: rec:RHECIAT_CH0001396 hypothetical protein YP_002280455.1 KEGG: ret:RHE_CH01301 hypothetical protein YP_002280456.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: rec:RHECIAT_CH0001398 probable DNA-directed DNA polymerase protein (uracil-DNA glycosylase) YP_002280457.1 KEGG: rec:RHECIAT_CH0001399 molecular chaperone heat shock protein (HSP70) YP_002280458.1 PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH01304 probable multidrug efflux transporter, AcrB/AcrD/AcrF family YP_002280459.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0001401 probable protein secretion protein, HlyD family YP_002280460.1 PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_CH01306 aminoglycoside phosphotransferase protein (antibiotic resistance protein) YP_002280461.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH01307 probable 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002280462.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rec:RHECIAT_CH0001404 electron transfer flavoprotein-ubiquinone oxidoreductase protein YP_002280463.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0001405 hypothetical protein YP_002280464.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001406 permease membrane protein YP_002280465.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0001407 transcriptional regulator protein, AsnC family YP_002280466.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: rec:RHECIAT_CH0001408 Mg2+ transporter YP_002280467.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sme:SMc02380 oxidoreductase transmembrane protein YP_002280468.1 PFAM: helix-turn-helix HxlR type; KEGG: atc:AGR_C_1831 hypothetical protein YP_002280469.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01313 permease YP_002280470.1 PFAM: diacylglycerol kinase; KEGG: rec:RHECIAT_CH0001411 probable diacylglycerol kinase protein YP_002280471.1 PFAM: glutamine synthetase; KEGG: rec:RHECIAT_CH0001412 probable glutamine synthetase protein YP_002280472.1 PFAM: aminotransferase class-III; KEGG: rec:RHECIAT_CH0001413 adenosylmethionine-8-amino-7-oxononanoate aminotransferase protein YP_002280473.1 KEGG: rec:RHECIAT_CH0001415 glycosyltransferase protein YP_002280474.1 PFAM: glycosyl transferase family 39; KEGG: rec:RHECIAT_CH0001416 glycosyltransferase protein YP_002280475.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH01319 probable glycosyltransferase protein YP_002280476.1 PFAM: glycosyl transferase family 39; KEGG: ret:RHE_CH01320 hypothetical conserved membrane protein YP_002280477.1 KEGG: ret:RHE_CH01321 hypothetical conserved membrane protein YP_002280478.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_CH01322 RNA polymerase sigma factor protein (sigma-70) YP_002280479.1 PFAM: DGPFAETKE family protein; KEGG: rec:RHECIAT_CH0001421 hypothetical protein YP_002280480.1 PFAM: DGPFAETKE family protein; KEGG: rec:RHECIAT_CH0001422 hypothetical protein YP_002280481.1 PFAM: DGPFAETKE family protein; KEGG: rec:RHECIAT_CH0001423 hypothetical protein YP_002280482.1 KEGG: rec:RHECIAT_CH0001424 hypothetical protein YP_002280483.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_002280484.1 KEGG: rec:RHECIAT_CH0001426 hypothetical protein YP_002280485.1 KEGG: ret:RHE_CH01328 hypothetical protein YP_002280486.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: ret:RHE_CH01329 hypothetical protein YP_002280487.1 catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate YP_002280488.1 KEGG: rec:RHECIAT_CH0001430 hypothetical protein YP_002280489.1 KEGG: rec:RHECIAT_CH0001431 hypothetical protein YP_002280490.1 KEGG: rec:RHECIAT_CH0001432 hypothetical protein YP_002280491.1 PFAM: regulatory protein LysR; KEGG: ret:RHE_CH01336 probable transcriptional regulator protein, LysR family YP_002280493.1 KEGG: ret:RHE_CH01337 hypothetical protein YP_002280494.1 KEGG: rec:RHECIAT_CH0001436 hypothetical protein YP_002280495.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: rec:RHECIAT_CH0001437 multidrug efflux protein, MatE family YP_002280496.1 KEGG: mlo:msr3035 hypothetical protein YP_002280497.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH01340 probable transcriptional regulator protein YP_002280498.1 PFAM: protein of unknown function DUF1127; KEGG: mlo:msr3036 hypothetical protein YP_002280499.1 PFAM: myo-inositol catabolism IolB domain protein; KEGG: rec:RHECIAT_CH0001438 myo-inositol catabolism protein YP_002280500.1 PFAM: xylose isomerase; KEGG: rec:RHECIAT_CH0001439 myo-inositol catabolism protein YP_002280501.1 PFAM: thiamine pyrophosphatase domain protein TPP-binding; thiamine pyrophosphatase; thiamine pyrophosphatase TPP binding domain protein; KEGG: ret:RHE_CH01343 myo-inositol catabolism, acetolactate synthase protein YP_002280502.1 PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0001441 5-dehydro-2-deoxygluconokinase protein (myo-inositol catabolism) YP_002280503.1 PFAM: sugar isomerase (SIS); KEGG: rec:RHECIAT_CH0001442 transcriptional regulator protein YP_002280504.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_CH0001443 dehydrogenase/oxidoreductase protein YP_002280505.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0001444 probable ferredoxin-NAD(+) reductase protein YP_002280506.1 PFAM: porin; KEGG: rec:RHECIAT_CH0001446 porin outer membrane protein YP_002280507.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH01379 hydrolase protein YP_002280508.1 PFAM: lytic transglycosylase catalytic; KEGG: rec:RHECIAT_CH0001448 probable murein transglycosylase protein YP_002280509.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002280510.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002280511.1 PFAM: protein of unknown function DUF88; KEGG: ret:RHE_CH01383 hypothetical protein YP_002280512.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas YP_002280513.1 KEGG: rec:RHECIAT_CH0001453 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_002280514.1 KEGG: rec:RHECIAT_CH0001454 hypothetical protein YP_002280515.1 KEGG: ret:RHE_CH01387 hypothetical protein YP_002280516.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002280517.1 KEGG: rec:RHECIAT_CH0001457 signal peptidase I protein; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_002280518.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002280519.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002280520.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rec:RHECIAT_CH0001460 probable transcriptional regulator protein, CRP/FNR family YP_002280521.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0001461 two-component response regulator protein YP_002280522.1 KEGG: ret:RHE_PD00322 probable insertion sequence transposase protein YP_002280523.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002280524.1 PFAM: aldo/keto reductase; KEGG: ret:RHE_CH01395 oxidoreductase protein YP_002280525.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: rec:RHECIAT_CH0001464 molybdenum cofactor sulfurase protein YP_002280526.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: ret:RHE_CH01397 metal-dependent phosphohydrolase protein YP_002280527.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ret:RHE_CH01398 signal-transducer protein YP_002280528.1 KEGG: ret:RHE_CH01399 hypothetical protein YP_002280529.1 PFAM: superoxide dismutase; KEGG: rec:RHECIAT_CH0001468 superoxide dismutase protein YP_002280530.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rec:RHECIAT_CH0001469 mechanosensitive ion channel protein YP_002280531.1 KEGG: ret:RHE_CH01402 tyrosine phosphatase protein YP_002280532.1 KEGG: ret:RHE_CH01403 hydrolase protein YP_002280533.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: rec:RHECIAT_CH0001472 aminomethyltransferase (glycine cleavage) protein YP_002280534.1 KEGG: ret:RHE_CH01405 hypothetical protein YP_002280535.1 KEGG: rec:RHECIAT_CH0001474 hypothetical protein YP_002280536.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0001475 hypothetical protein YP_002280537.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0001476 ADP-ribose pyrophosphatase protein, MutT/nudiX family YP_002280538.1 PFAM: protein of unknown function UPF0060; KEGG: rec:RHECIAT_CH0001477 hypothetical protein YP_002280539.1 PFAM: protein of unknown function DUF159; KEGG: rec:RHECIAT_CH0001478 hypothetical protein YP_002280540.1 KEGG: atc:AGR_C_1959 hypothetical protein YP_002280541.1 KEGG: rec:RHECIAT_CH0001479 exopolysaccharide production CDP-diacylglycerol-serine O-phosphatidyltransferase protein; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_002280542.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002280543.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001481 ABC transporter ATP-binding protein YP_002280544.1 PFAM: peptidoglycan-binding LysM; KEGG: ret:RHE_CH01416 peptidoglycan binding protein (LysM domain involved in cell wall degradation) YP_002280545.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0001483 hypothetical protein YP_002280546.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001484 transcriptional regulator protein, LysR family YP_002280547.1 PFAM: beta-lactamase; KEGG: mbn:Mboo_1080 beta-lactamase YP_002280548.1 PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0001486 alpha/beta hydrolase fold protein YP_002280549.1 KEGG: rec:RHECIAT_CH0001487 hypothetical protein YP_002280550.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001488 permease YP_002280551.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002555 acetyltransferase protein YP_002280552.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: ret:RHE_CH01419 alpha-isopropylmalate/homocitrate synthase family transferase YP_002280553.1 KEGG: ret:RHE_CH01420 proline iminopeptidase protein; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_002280554.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH01421 hypothetical protein YP_002280555.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0001492 glutathione-dependent formaldehyde-activating protein YP_002280556.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0001493 glutathione-dependent formaldehyde-activating protein YP_002280557.1 PFAM: protein of unknown function DUF559; KEGG: ret:RHE_CH01424 hypothetical protein YP_002280558.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002280559.1 PFAM: glycoside hydrolase family 25; KEGG: rec:RHECIAT_CH0001497 probable glycosyl hydrolase, lysozyme protein YP_002280560.1 KEGG: pst:PSPTO_3337 hypothetical protein YP_002280561.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001498 probable oxidoreductase protein YP_002280562.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002280563.1 PFAM: colicin V production protein; KEGG: rec:RHECIAT_CH0001500 colicin V production protein YP_002280564.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002280565.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: ret:RHE_CH01431 amino acid efflux protein, LysE family YP_002280566.1 KEGG: ret:RHE_CH01432 alanine racemase protein; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002280567.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: ret:RHE_CH01433 probable transcriptional regulator protein, AraC family YP_002280568.1 PFAM: AzlC family protein; KEGG: ret:RHE_CH01434 branched-chain amino acid transporter (azaleucine resistance) YP_002280569.1 PFAM: branched-chain amino acid transport; KEGG: ret:RHE_CH01435 hypothetical conserved membrane protein YP_002280570.1 unwinds double stranded DNA YP_002280571.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002280572.1 KEGG: rec:RHECIAT_CH0001506 hypothetical protein YP_002280573.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002280574.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002280575.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0001509 oxidoreductase protein YP_002280576.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: ret:RHE_CH01442 [acyl-carrier protein] S-malonyltransferase protein YP_002280577.1 catalyzes the formation of 3-hydroxyacyl-ACP from 3-keto-acyl-ACP; in the rhizobia this protein interacts with NodF to allow for the synthesis of highly polyunsaturated fatty acids necessary for nodulation YP_002280578.1 carries the fatty acid chain in fatty acid biosynthesis YP_002280579.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002280580.1 PFAM: aminodeoxychorismate lyase; KEGG: rec:RHECIAT_CH0001514 aminodeoxychorismate lyase protein YP_002280581.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ret:RHE_CH01447 hypothetical protein YP_002280582.1 Essential for recycling GMP and indirectly, cGMP YP_002280583.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002280584.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002280585.1 KEGG: rec:RHECIAT_CH0001519 probable peptidyl-prolyl cis-trans isomerase protein YP_002280586.1 PFAM: organic solvent tolerance protein; KEGG: rec:RHECIAT_CH0001520 organic solvent tolerance protein YP_002280587.1 PFAM: permease YjgP/YjgQ family protein; KEGG: ret:RHE_CH01453 permease YP_002280588.1 PFAM: permease YjgP/YjgQ family protein; KEGG: rec:RHECIAT_CH0001522 permease YP_002280589.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: ret:RHE_CH01455 phosphatase protein YP_002280590.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002280591.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_002280592.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_CH0001526 D-galactose-1-dehydrogenase protein YP_002280593.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: rec:RHECIAT_CH0001527 probable prolyl oligopeptidase protein YP_002280594.1 PFAM: polysaccharide deacetylase; KEGG: rec:RHECIAT_CH0001535 polysaccharide deacetylase protein YP_002280595.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001536 ABC transporter ATP-binding protein YP_002280596.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ret:RHE_CH01469 hypothetical protein YP_002280597.1 PFAM: DinB family protein; KEGG: ret:RHE_CH01470 hypothetical protein YP_002280598.1 PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001539 beta-aryl ether cleaving enzyme, lignin degradation protein YP_002280599.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002280600.1 KEGG: rec:RHECIAT_CH0001541 hypothetical protein YP_002280601.1 PFAM: protein of unknown function DUF1470; KEGG: ret:RHE_CH01474 hypothetical protein YP_002280602.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0001543 probable ABC transporter permease YP_002280603.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: rec:RHECIAT_CH0001544 molybdopterin converting factor protein, subunit 2 YP_002280604.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rec:RHECIAT_CH0001545 molybdopterin converting factor protein, subunit 1 YP_002280605.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rec:RHECIAT_CH0001546 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein YP_002280606.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002280607.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001548 probable 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002280608.1 PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: ret:RHE_CH01481 outer membrane protein YP_002280609.1 PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0001550 glutathione S-transferase protein YP_002280610.1 PFAM: protein of unknown function DUF519; KEGG: rec:RHECIAT_CH0001551 hypothetical protein YP_002280611.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rec:RHECIAT_CH0001552 probable anaerobic dehydrogenase protein YP_002280612.1 PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH01485 ADP-ribose pyrophosphatase protein YP_002280613.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; KEGG: rec:RHECIAT_CH0001554 phosphonate metabolism protein YP_002280614.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002280615.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002280616.1 PFAM: protein of unknown function UPF0118; KEGG: rec:RHECIAT_CH0001557 permease YP_002280617.1 KEGG: rec:RHECIAT_CH0001558 hypothetical protein YP_002280618.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002280619.1 PFAM: Ppx/GppA phosphatase; KEGG: rec:RHECIAT_CH0001560 exopolyphosphatase protein YP_002280620.1 KEGG: rec:RHECIAT_CH0001561 hypothetical protein YP_002280621.1 KEGG: ret:RHE_CH01494 adenylate cyclase protein YP_002280622.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: rec:RHECIAT_CH0001563 ribonuclease III protein YP_002280623.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: rec:RHECIAT_CH0001564 probable metallo-oxidoreductase protein YP_002280624.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002280625.1 PFAM: beta-lactamase; KEGG: cak:Caul_2152 beta-lactamase YP_002280626.1 PFAM: regulatory protein TetR; KEGG: mms:mma_1563 TetR family transcriptional regulator YP_002280627.1 KEGG: ret:RHE_CH01498 hypothetical protein YP_002280628.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002280629.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0001568 hypothetical protein YP_002280630.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001571 permease YP_002280631.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_002280632.1 PFAM: RDD domain containing protein; KEGG: ret:RHE_CH01503 hypothetical conserved membrane protein YP_002280633.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002280634.1 KEGG: ret:RHE_CH01505 hypothetical protein YP_002280635.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0001576 probable transcriptional regulator protein, MarR family YP_002280642.1 KEGG: bbt:BBta_4176 hypothetical protein YP_002280644.1 KEGG: npu:Npun_R1467 hypothetical protein YP_002280649.1 PFAM: endodeoxyribonuclease RusA; KEGG: sgl:SG0745 phage endonuclease YP_002280651.1 KEGG: bbr:BB3530 phage-related hypothetical protein YP_002280656.1 KEGG: bur:Bcep18194_A5240 hypothetical protein YP_002280658.1 KEGG: syx:SynWH7803_2397 hypothetical protein YP_002280661.1 KEGG: bbr:BB2205 hypothetical protein YP_002280662.1 KEGG: bad:BAD_1197 beta-D-glucosideglucohydrolase YP_002280663.1 TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: nmu:Nmul_A1463 phage terminase, large subunit, PBSX YP_002280665.1 KEGG: aav:Aave_2355 hypothetical protein YP_002280666.1 KEGG: mgm:Mmc1_1473 conserved hypothetical protein, conserved YP_002280669.1 KEGG: ter:Tery_3470 hemolysin-type calcium-binding region YP_002280670.1 KEGG: azc:AZC_3233 outer membrane autotransporter barrel YP_002280671.1 KEGG: ote:Oter_1689 cell wall surface anchor family protein YP_002280672.1 KEGG: ade:Adeh_2705 response regulator receiver YP_002280673.1 KEGG: rpt:Rpal_3074 hypothetical protein YP_002280674.1 KEGG: dac:Daci_3257 hypothetical protein YP_002280675.1 PFAM: glycoside hydrolase family 5; KEGG: xcv:XCV0029 cellulase precursor YP_002280676.1 KEGG: mbr:MONBRDRAFT_33819 hypothetical protein YP_002280679.1 KEGG: vvy:VV1850 hypothetical protein YP_002280682.1 PFAM: domain of unknown function DUF1738; KEGG: spq:SPAB_05436 hypothetical protein YP_002280683.1 KEGG: bbt:BBta_p0247 type IV secretory pathway protein VirD4 YP_002280684.1 KEGG: rpd:RPD_3939 MobA/MobL protein YP_002280690.1 PFAM: integrase family protein; KEGG: mex:Mext_0473 integrase family protein YP_002280691.1 KEGG: bbr:BB2205 hypothetical protein YP_002280692.1 PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein; KEGG: rfr:Rfer_4038 phosphoesterase, PA-phosphatase related YP_002280693.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: nha:Nham_3725 phosphoesterase, PA-phosphatase related YP_002280694.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter YP_002280695.1 KEGG: mes:Meso_4139 ChrB domain protein YP_002280696.1 PFAM: peptidoglycan-binding protein; KEGG: rec:RHECIAT_CH0001577 peptidoglycan binding protein (involved in cell wall degradation) YP_002280697.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002280698.1 PFAM: ATP-cone domain protein; KEGG: rec:RHECIAT_CH0001579 hypothetical protein YP_002280699.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: ret:RHE_CH01510 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedeami nase protein YP_002280700.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002280701.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: rec:RHECIAT_CH0001582 glucose-1-phosphate thymidylyltransferase protein YP_002280702.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0001583 dTDP-4-dehydrorhamnose reductase protein YP_002280703.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ret:RHE_CH01514 dTDP-glucose-4,6-dehydratase protein YP_002280704.1 KEGG: rec:RHECIAT_CH0001585 dTDP-4-dehydrorhamnose 3,5-epimerase protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_002280705.1 KEGG: rec:RHECIAT_CH0001586 hypothetical protein YP_002280707.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH01522 acetyltransferase protein YP_002280708.1 PFAM: cupin; KEGG: rec:RHECIAT_CH0001593 hypothetical protein YP_002280709.1 KEGG: rec:RHECIAT_CH0001594 hypothetical protein YP_002280710.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002280711.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002280712.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_002280713.1 PFAM: SmpA/OmlA domain protein; KEGG: rec:RHECIAT_CH0001599 outer membrane protein YP_002280714.1 PFAM: ubiquinol-cytochrome C chaperone; KEGG: rec:RHECIAT_CH0001600 hypothetical protein YP_002280715.1 KEGG: rec:RHECIAT_CH0001601 hypothetical protein YP_002280716.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002280717.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002280718.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002280719.1 PFAM: regulatory protein MerR; KEGG: ret:RHE_CH01534 probable transcriptional regulator protein, MerR family YP_002280720.1 PFAM: response regulator receiver; KEGG: ret:RHE_CH01535 two-component response regulator protein YP_002280721.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH01536 two-component sensor histidine kinase protein YP_002280722.1 PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001608 hypothetical protein YP_002280723.1 KEGG: rec:RHECIAT_CH0001609 hypothetical protein YP_002280724.1 KEGG: rec:RHECIAT_CH0001610 cellulose synthase protein; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ YP_002280725.1 PFAM: cellulose synthase subunit B; KEGG: ret:RHE_CH01543 cellulose synthase protein YP_002280726.1 PFAM: glycoside hydrolase family 8; KEGG: rec:RHECIAT_CH0001612 endoglucanase protein YP_002280727.1 KEGG: ret:RHE_CH01545 hypothetical protein YP_002280728.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0001614 (DL)-glycerol-3-phosphatase protein YP_002280729.1 PFAM: methyltransferase type 11; methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: rec:RHECIAT_CH0001616 probable 3-demethylubiquinone-9 3-methyltransferase protein YP_002280730.1 KEGG: rec:RHECIAT_CH0001617 hypothetical protein YP_002280731.1 PFAM: protein of unknown function DUF982; KEGG: mes:Meso_0848 hypothetical protein YP_002280732.1 KEGG: ret:RHE_CH01550 hypothetical protein YP_002280733.1 KEGG: oan:Oant_2570 hypothetical protein YP_002280734.1 KEGG: rec:RHECIAT_CH0001620 hypothetical protein YP_002280735.1 PFAM: ROK family protein; KEGG: ret:RHE_CH01552 probable transcriptional regulator protein, ROK family YP_002280736.1 KEGG: rec:RHECIAT_CH0001622 hypothetical protein YP_002280737.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001623 probable acetyltransferase protein YP_002280738.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0001624 sugar ABC transporter substrate-binding protein YP_002280739.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0001625 sugar ABC transporter permease YP_002280740.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0001626 sugar ABC transporter permease YP_002280741.1 KEGG: rec:RHECIAT_CH0001627 hypothetical conserved membrane protein YP_002280742.1 KEGG: rec:RHECIAT_CH0001628 probable glycosyltransferase protein; TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_002280743.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0001629 probable glycosyltransferase protein YP_002280744.1 PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01561 probable polysaccharide export system protein YP_002280745.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0001631 non-specific protein-tyrosine kinase (lipopolysaccharide biosynthesis) protein YP_002280746.1 KEGG: rec:RHECIAT_CH0001632 hypothetical protein YP_002280747.1 KEGG: rec:RHECIAT_CH0001633 hypothetical protein YP_002280748.1 PFAM: cytochrome oxidase assembly; KEGG: rec:RHECIAT_CH0001634 probable cytochrome C oxidase protein YP_002280749.1 PFAM: protein of unknown function DUF81; KEGG: rec:RHECIAT_CH0001635 hypothetical conserved membrane protein YP_002280750.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_002280751.1 catalyzes the formation of putrescine from agmatine YP_002280752.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01569 florfenicol/chloramphenicol resistance transporter, Bcr/CflA subfamily YP_002280753.1 PFAM: acyltransferase 3; KEGG: azo:azo3255 acyltransferase YP_002280754.1 forms a direct contact with the tRNA during translation YP_002280755.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002280756.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH01572 probable transcriptional regulator protein, LysR family YP_002280757.1 KEGG: rec:RHECIAT_CH0001641 hypothetical protein YP_002280758.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002280759.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001643 permease YP_002280760.1 KEGG: rec:RHECIAT_CH0001645 hypothetical protein YP_002280761.1 PFAM: CoA-binding protein; KEGG: rec:RHECIAT_CH0001646 CoA-binding protein YP_002280762.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_002280763.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: rec:RHECIAT_CH0001655 hypothetical protein YP_002280764.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rec:RHECIAT_CH0001656 sensory box/GGDEF family protein YP_002280765.1 PFAM: cytochrome P450; KEGG: rec:RHECIAT_CH0001657 probable cytochrome P450 protein YP_002280766.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ret:RHE_CH01586 sensory box/GGDEF family protein YP_002280767.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002280768.1 binds and unfolds substrates as part of the ClpXP protease YP_002280769.1 KEGG: rec:RHECIAT_CH0001661 ATP-dependent protease La protein; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002280770.1 PFAM: histone family protein DNA-binding protein; KEGG: rec:RHECIAT_CH0001662 bacterial nucleoid DNA-binding protein YP_002280771.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001663 permease YP_002280772.1 KEGG: rec:RHECIAT_CH0001664 hypothetical protein YP_002280773.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0001665 probable oxidoreductase protein YP_002280774.1 PFAM: cupin; KEGG: rec:RHECIAT_CH0001666 hypothetical protein YP_002280775.1 KEGG: ret:RHE_CH01595 hypothetical protein YP_002280776.1 KEGG: ret:RHE_CH01596 hypothetical protein YP_002280777.1 PFAM: glutathione peroxidase; KEGG: rec:RHECIAT_CH0001669 glutathione peroxidase protein YP_002280778.1 KEGG: rec:RHECIAT_CH0001670 hypothetical protein YP_002280779.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280780.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002280781.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280782.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280783.1 KEGG: rec:RHECIAT_CH0001679 hypothetical protein YP_002280784.1 catalyzes the transfer of electrons from NADH to ubiquinone YP_002280785.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_002280786.1 KEGG: ret:RHE_CH01610 hypothetical protein YP_002280787.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280788.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280789.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280790.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280791.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280792.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002280793.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280794.1 Catalyzes the transfer of electrons from NADH to quinone YP_002280795.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: ret:RHE_CH01619 biotin--[acetyl-CoA carboxylase] synthetase protein YP_002280796.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: rec:RHECIAT_CH0001692 metallo-beta-lactamase family protein YP_002280797.1 KEGG: ret:RHE_CH01621 lactoylglutathione lyase protein; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_002280798.1 PFAM: protein of unknown function DUF1467; KEGG: rec:RHECIAT_CH0001694 hypothetical protein YP_002280799.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002280800.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0001696 probable lipoprotein ABC transporter permease YP_002280801.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001697 probable lipoprotein ABC transporter ATP-binding protein YP_002280802.1 KEGG: rec:RHECIAT_CH0001698 hypothetical protein YP_002280803.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002280804.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH01628 hypothetical protein YP_002280805.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002280806.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001702 acetyltransferase protein YP_002280807.1 KEGG: ret:RHE_CH01631 hypothetical protein YP_002280808.1 KEGG: rec:RHECIAT_CH0001704 hypothetical protein YP_002280809.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0001705 two-component response regulator protein YP_002280810.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP YP_002280811.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002280812.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001708 transporter YP_002280813.1 PFAM: protein of unknown function DUF983; KEGG: rec:RHECIAT_CH0001709 hypothetical protein YP_002280814.1 KEGG: rec:RHECIAT_CH0001710 exoribonuclease R protein; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein YP_002280815.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002280816.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rec:RHECIAT_CH0001712 DNA processing chain A protein YP_002280817.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002280818.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_002280819.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002280820.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_CH01643 acyl-CoA dehydrogenase protein YP_002280821.1 KEGG: atc:AGR_C_1846 hypothetical protein YP_002280822.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: rec:RHECIAT_CH0001717 probable ribonuclease protein YP_002280823.1 PFAM: cell wall hydrolase/autolysin; KEGG: ret:RHE_CH01646 N-acetylmuramoyl-L-alanine amidase protein YP_002280824.1 KEGG: rec:RHECIAT_CH0001720 penicillin binding peptidoglycan synthetase protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_002280825.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_002280826.1 KEGG: rec:RHECIAT_CH0001722 hypothetical protein YP_002280827.1 KEGG: rec:RHECIAT_CH0001723 hypothetical protein YP_002280828.1 catalyzes the phosphorylation of NAD to NADP YP_002280829.1 KEGG: rec:RHECIAT_CH0001726 hypothetical protein YP_002280831.1 KEGG: rec:RHECIAT_CH0001727 hypothetical protein YP_002280832.1 KEGG: aba:acid345_2422 hypothetical protein YP_002280833.1 KEGG: ret:RHE_CH01654 metalloprotease inhibitor (transcriptional regulator) protein YP_002280834.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ret:RHE_CH01655 probable tRNA/rRNA methyltransferase protein YP_002280835.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002280837.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rec:RHECIAT_CH0001733 probable nucleoside-diphosphate-sugar epimerase protein YP_002280838.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002280839.1 Modulates Rho-dependent transcription termination YP_002280840.1 binds directly to 23S ribosomal RNA YP_002280841.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002280842.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002280843.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002280844.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002280845.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002280846.1 KEGG: rec:RHECIAT_CH0001743 hypothetical protein YP_002280847.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002280848.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002280849.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002280850.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002280851.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002280852.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002280853.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002280854.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002280855.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002280856.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002280857.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002280858.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002280859.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002280860.1 one of the stabilizing components for the large ribosomal subunit YP_002280861.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002280862.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002280863.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002280864.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002280865.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002280866.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002280867.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002280868.1 binds 5S rRNA along with protein L5 and L25 YP_002280869.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002280870.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002280871.1 late assembly protein YP_002280872.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002280873.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002280874.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002280875.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002280876.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002280877.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002280878.1 KEGG: rec:RHECIAT_CH0001776 hypothetical protein YP_002280879.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_002280880.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_002280881.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002280882.1 KEGG: ret:RHE_CH01705 hypothetical protein YP_002280883.1 PFAM: protein of unknown function DUF1232; KEGG: ret:RHE_CH01706 hypothetical protein YP_002280884.1 KEGG: rec:RHECIAT_CH0001782 serine protease precursor protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_002280885.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001783 ATPase protein YP_002280886.1 KEGG: ret:RHE_CH01709 hypothetical protein YP_002280887.1 PFAM: alpha/beta hydrolase fold; thioesterase; KEGG: ade:Adeh_3177 alpha/beta hydrolase fold-1 YP_002280888.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH01711 probable dehydrogenase protein YP_002280889.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001788 probable transcriptional regulator protein, LysR family YP_002280890.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: rec:RHECIAT_CH0001790 esterase/lipase/thioesterase family protein YP_002280891.1 PFAM: carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_CH0001791 hypothetical protein YP_002280892.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: rec:RHECIAT_CH0001792 two-component sensor histidine kinase protein YP_002280893.1 KEGG: smd:Smed_0681 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_002280894.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0001794 transcriptional regulator protein, LacI family YP_002280895.1 PFAM: coenzyme A transferase; KEGG: rec:RHECIAT_CH0001795 probable acyl-CoA transferase protein YP_002280896.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: ret:RHE_CH01721 probable enoyl-CoA hydratase protein YP_002280897.1 PFAM: aldehyde dehydrogenase; KEGG: rec:RHECIAT_CH0001797 probable NAD-dependent L-sorbosone dehydrogenase protein YP_002280898.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH01723 probable sugar ABC transporter substrate-binding protein YP_002280899.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003982 probable sugar ABC transporter permease YP_002280900.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03707 probable sugar ABC transporter permease YP_002280901.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003980 probable sugar ABC transporter ATP-binding protein YP_002280902.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0001802 dehydrogenase protein YP_002280903.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sme:SMc04390 L-SORBOSE dehydrogenase, FAD dependent protein YP_002280904.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_CH0001804 probable succinate dehydrogenase protein YP_002280905.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rec:RHECIAT_CH0001805 oxidoreductase protein YP_002280906.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0001808 exodeoxyribonuclease III protein YP_002280907.1 KEGG: ret:RHE_CH01732 hypothetical protein YP_002280908.1 KEGG: rec:RHECIAT_CH0001811 hypothetical protein YP_002280909.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rec:RHECIAT_CH0001812 probable two-component response regulator protein YP_002280910.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rec:RHECIAT_CH0001813 probable two-component sensor histidine kinase protein YP_002280911.1 KEGG: rec:RHECIAT_CH0001814 hypothetical protein YP_002280912.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: ret:RHE_CH01736 probable ubiquinone/menaquinone biosynthesis methyltransferase protein YP_002280913.1 KEGG: bbt:BBta_6062 exported protein of unknown function YP_002280914.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE2 domain protein; KEGG: bja:bll6124 hypothetical protein YP_002280915.1 KEGG: rec:RHECIAT_CH0001816 hypothetical protein YP_002280916.1 PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001817 hypothetical protein YP_002280917.1 PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001818 hypothetical protein YP_002280919.1 PFAM: BA14K family protein; KEGG: ret:RHE_CH01738 hypothetical protein YP_002280920.1 KEGG: ret:RHE_CH01739 hypothetical protein YP_002280921.1 KEGG: rec:RHECIAT_CH0001821 hypothetical protein YP_002280922.1 PFAM: peptidoglycan-binding protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0001822 hypothetical protein YP_002280923.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_002280924.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH01743 probable transcriptional regulator protein, AsnC family YP_002280925.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0001825 probable transcriptional regulator protein, AsnC family YP_002280926.1 KEGG: rec:RHECIAT_CH0001826 probable 4-hydroxyphenylpyruvate dioxygenase protein; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_002280927.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_002280928.1 PFAM: fumarylacetoacetate hydrolase; KEGG: rec:RHECIAT_CH0001828 hydrolase, fumarylacetoacetate hydrolase family protein YP_002280929.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH01748 maleylacetoacetate isomerase protein YP_002280930.1 PFAM: MEKHLA domain protein; KEGG: ret:RHE_CH01749 hypothetical protein YP_002280931.1 KEGG: rsh:Rsph17029_3205 hypothetical protein YP_002280932.1 PFAM: patatin; KEGG: rec:RHECIAT_CH0001832 hypothetical protein YP_002280933.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002280934.1 KEGG: vco:VC0395_0102 hypothetical protein YP_002280935.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_002280936.1 PFAM: UspA domain protein; KEGG: rec:RHECIAT_CH0001841 probable universal stress protein YP_002280937.1 PFAM: molybdopterin binding domain; KEGG: ret:RHE_CH01756 competence-damage associated protein (nucleotide-utilizing enzyme related tomolybdopterin-biosynthesis enzyme MoeA) YP_002280938.1 KEGG: sme:SMc01543 hypothetical protein YP_002280939.1 KEGG: sme:SMc01542 hypothetical protein YP_002280940.1 KEGG: ret:RHE_CH01758 hypothetical protein YP_002280941.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_002280942.1 KEGG: ret:RHE_CH01760 hypothetical protein YP_002280943.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rec:RHECIAT_CH0001848 sensory box/GGDEF family protein YP_002280944.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001849 major facilitator family transporter YP_002280945.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001850 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002280946.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_CH01763 probable transcriptional regulator protein, TetR family YP_002280947.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: rec:RHECIAT_CH0001852 [acyl-carrier-protein] phosphodiesterase protein YP_002280948.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001853 probable transcriptional regulator protein, LysR family YP_002280949.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_002280950.1 PFAM: type IV pilus assembly PilZ; KEGG: rec:RHECIAT_CH0001855 hypothetical protein YP_002280951.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0001856 hypothetical conserved membrane protein YP_002280952.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0001857 leucine-responsive transcriptional regulator protein, AsnC family YP_002280953.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: ret:RHE_CH01770 alanine dehydrogenase protein YP_002280954.1 PFAM: protein of unknown function DUF1203; KEGG: rec:RHECIAT_CH0001859 hypothetical protein YP_002280955.1 KEGG: rec:RHECIAT_CH0001860 acetyltransferase protein YP_002280956.1 PFAM: rhodanese; KEGG: ret:RHE_CH01773 thiosulfate sulfurtransferase protein YP_002280957.1 PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: rec:RHECIAT_CH0001862 alanyl-tRNA synthetase protein YP_002280958.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_002280959.1 TIGRFAM: anti-sigma factor, , ChrR family; KEGG: rec:RHECIAT_CH0001864 anti-sigma factor transcriptional activator protein YP_002280960.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001865 short-chain dehydrogenase/oxidoreductase protein YP_002280961.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0001866 cyclopropane-fatty-acyl-phospholipid synthase protein YP_002280962.1 PFAM: protein of unknown function DUF1365; KEGG: rec:RHECIAT_CH0001867 hypothetical protein YP_002280963.1 PFAM: amine oxidase; KEGG: rec:RHECIAT_CH0001868 amine oxidase protein YP_002280964.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rec:RHECIAT_CH0001869 deoxyribodipyrimidine photo-lyase protein YP_002280965.1 KEGG: rec:RHECIAT_CH0001870 hypothetical protein YP_002280966.1 KEGG: atc:AGR_L_1503 hypothetical protein YP_002280967.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; hypothetical protein; KEGG: yen:YE3361 AsnC-family transcriptional regulator YP_002280968.1 KEGG: yen:YE3360 hypothetical protein YP_002280969.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ret:RHE_CH01779 hydrolase protein, haloacid dehalogenase-like family YP_002280970.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rec:RHECIAT_CH0001872 nitrate reductase protein, large subunit YP_002280971.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rec:RHECIAT_CH0001873 nitrite reductase (NAD(P)H) protein, small subunit YP_002280972.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rec:RHECIAT_CH0001874 nitrite reductase (NAD(P)H) protein, large subunit YP_002280973.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0001875 probable nitrate transporter YP_002280974.1 KEGG: rec:RHECIAT_CH0001876 nitrate ABC transporter substrate-binding protein YP_002280975.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: ret:RHE_CH01785 two-component response regulator protein YP_002280976.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: atc:AGR_L_3113 hypothetical protein YP_002280977.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: atc:AGR_L_3114 hypothetical protein YP_002280978.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: rec:RHECIAT_CH0001879 peroxidase protein YP_002280979.1 PFAM: lytic transglycosylase catalytic; KEGG: rec:RHECIAT_CH0001880 probable glycosyltransferase protein YP_002280980.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: ret:RHE_CH01793 hypothetical protein YP_002280981.1 PFAM: MOFRL domain protein; KEGG: rec:RHECIAT_CH0001882 hydroxypyruvate reductase protein YP_002280982.1 KEGG: ret:RHE_CH01795 hypothetical protein YP_002280983.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: sme:SMa1961 polyhydroxybutyrate depolymerase YP_002280984.1 PFAM: protein of unknown function DUF1452; KEGG: ret:RHE_CH01796 hypothetical conserved membrane protein YP_002280985.1 PFAM: catalase domain protein; KEGG: smd:Smed_4123 catalase YP_002280986.1 KEGG: ret:RHE_CH01798 hypothetical protein YP_002280987.1 KEGG: atc:AGR_L_2005 hypothetical protein YP_002280988.1 KEGG: rec:RHECIAT_CH0001892 hypothetical protein YP_002280989.1 KEGG: rec:RHECIAT_CH0001893 hypothetical protein YP_002280991.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: ret:RHE_CH01809 protein-L-isoaspartate O-methyltransferase protein YP_002280992.1 KEGG: rec:RHECIAT_CH0001896 hypothetical protein YP_002280993.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002280994.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: ret:RHE_CH01812 probable outer membrane protein YP_002280995.1 KEGG: ret:RHE_CH01813 hypothetical protein YP_002280996.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: rec:RHECIAT_CH0001900 exopolysaccharide production negative regulator protein YP_002280997.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_CH01815 exodeoxyribonuclease III protein YP_002280998.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rec:RHECIAT_CH0001902 hypothetical protein YP_002280999.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002281000.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002281001.1 PFAM: sporulation domain protein; KEGG: rec:RHECIAT_CH0001905 hypothetical protein YP_002281002.1 PFAM: glycoside hydrolase; KEGG: rec:RHECIAT_CH0001906 probable beta-N-acetylhexosaminidase protein YP_002281003.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: rec:RHECIAT_CH0001907 chromosome segregation and condensation protein A YP_002281004.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rec:RHECIAT_CH0001908 chromosome segregation and condensation protein B YP_002281005.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_002281006.1 mediates the export of protein precursors bearing twin-arginine signal peptides YP_002281007.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rec:RHECIAT_CH0001911 sec-independent protein translocase protein YP_002281008.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002281009.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002281010.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins YP_002281011.1 PFAM: peptidoglycan-binding LysM; peptidase M23; KEGG: ret:RHE_CH01829 lipoprotein precursor protein YP_002281012.1 PFAM: protein of unknown function DUF815; KEGG: rec:RHECIAT_CH0001916 hypothetical protein YP_002281013.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ret:RHE_CH01831 preprotein tranlocase protein YP_002281014.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002281015.1 PFAM: protein of unknown function DUF498; KEGG: ret:RHE_CH01833 hypothetical protein YP_002281016.1 KEGG: rec:RHECIAT_CH0001920 phytoene synthase protein YP_002281017.1 KEGG: rec:RHECIAT_CH0001921 hypothetical protein YP_002281018.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_002281019.1 PFAM: protein of unknown function DUF1127; KEGG: rec:RHECIAT_CH0001923 hypothetical protein YP_002281020.1 PFAM: protein of unknown function DUF1127; KEGG: rec:RHECIAT_CH0001924 hypothetical protein YP_002281021.1 KEGG: rec:RHECIAT_CH0001926 hypothetical conserved membrane protein YP_002281022.1 KEGG: rec:RHECIAT_CH0001927 hypothetical conserved membrane protein YP_002281023.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002281024.1 KEGG: rec:RHECIAT_CH0001930 hypothetical protein YP_002281025.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rec:RHECIAT_CH0001931 hypothetical protein YP_002281026.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0001932 hypothetical protein YP_002281027.1 catalyzes the conversion of NADPH to NADH YP_002281028.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002281029.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002281030.1 KEGG: vei:Veis_2854 hypothetical protein YP_002281032.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0001937 probable transcriptional regulator protein, TetR family YP_002281033.1 KEGG: rec:RHECIAT_CH0001938 hypothetical protein YP_002281034.1 KEGG: ret:RHE_CH01851 hypothetical protein YP_002281035.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002281036.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_002281037.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002281038.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002281039.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_2432 hypothetical protein YP_002281040.1 KEGG: rec:RHECIAT_CH0001944 hypothetical protein YP_002281041.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH01860 probable acetyltransferase protein YP_002281042.1 KEGG: tfu:Tfu_1340 hypothetical protein YP_002281044.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002281045.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001949 probable acetyltransferase protein YP_002281046.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0001950 acetyltransferase protein YP_002281047.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis YP_002281048.1 KEGG: rec:RHECIAT_CH0001952 hypothetical protein YP_002281049.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bra:BRADO1309 SAM-dependent methyltransferases YP_002281050.1 KEGG: rec:RHECIAT_CH0001953 hypothetical protein YP_002281051.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_002281052.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002281053.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002281054.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002281055.1 PFAM: DSBA oxidoreductase; KEGG: rec:RHECIAT_CH0001958 probable outer membrane protein YP_002281056.1 PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0001959 aspartate transaminase protein YP_002281057.1 KEGG: ret:RHE_CH01874 hypothetical protein YP_002281058.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rec:RHECIAT_CH0001961 poly-beta-hydroxybutyrate polymerase protein YP_002281059.1 KEGG: rec:RHECIAT_CH0001962 hypothetical protein YP_002281060.1 PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0001963 succinyldiaminopimelate aminotransferase protein YP_002281061.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002281062.1 KEGG: rec:RHECIAT_CH0001965 hypothetical protein YP_002281063.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rec:RHECIAT_CH0001966 single-stranded-DNA-specific exonuclease protein YP_002281064.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: rec:RHECIAT_CH0001970 hypothetical protein YP_002281065.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0001971 lactoylglutathione lyase methylglyoxalase protein YP_002281066.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0001972 cold shock protein YP_002281067.1 PFAM: protein of unknown function DUF192; KEGG: rec:RHECIAT_CH0001973 hypothetical protein YP_002281068.1 PFAM: ETC complex subunit I; KEGG: ret:RHE_CH01888 probable NADH-ubiquinone oxidoreductase protein YP_002281070.1 PFAM: Hemolysin-type calcium-binding region; KEGG: ret:RHE_CH01892 RTX toxin hemolysin-type calcium-binding protein YP_002281073.1 KEGG: rec:RHECIAT_CH0001983 hypothetical protein YP_002281074.1 KEGG: rec:RHECIAT_CH0001984 hypothetical protein YP_002281075.1 KEGG: rec:RHECIAT_CH0001986 hypothetical protein YP_002281076.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0001987 general L-amino acid ABC transporter ATP-binding protein YP_002281077.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0001988 general L-amino acid ABC transporter permease YP_002281078.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0001989 general L-amino acid ABC transporter permease YP_002281079.1 TIGRFAM: cationic amino acid ABC transporter periplasmic binding protein; SMART: extracellular solute-binding protein family 3; KEGG: ret:RHE_CH01898 general L-amino acid ABC transporter substrate-binding protein YP_002281080.1 catalyzes the formation of L-homocysteine from cystathionine YP_002281081.1 PFAM: monooxygenase FAD-binding; KEGG: ret:RHE_CH01900 salicylate hydroxylase protein YP_002281082.1 KEGG: rec:RHECIAT_CH0001994 hypothetical protein YP_002281083.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH01902 probable hydrolase protein YP_002281084.1 KEGG: rec:RHECIAT_CH0001996 serine acetyltransferase protein; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_002281085.1 KEGG: rec:RHECIAT_CH0001997 hypothetical protein YP_002281086.1 TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: rec:RHECIAT_CH0001998 hypothetical protein YP_002281087.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_002281088.1 KEGG: rec:RHECIAT_CH0002000 ATP-dependent Clp protease protein, ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA YP_002281089.1 PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_6024 major facilitator superfamily MFS_1 YP_002281090.1 PFAM: histidine triad (HIT) protein; KEGG: ret:RHE_CH01908 hydrolase protein, HIT family YP_002281091.1 PFAM: protein of unknown function DUF482; KEGG: ret:RHE_CH01909 hypothetical protein YP_002281092.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rec:RHECIAT_CH0002003 probable glycerophosphoryl diester phosphodiesterase protein YP_002281093.1 PFAM: endoribonuclease L-PSP; KEGG: ret:RHE_CH01911 translation initiation inhibitor protein YP_002281094.1 PFAM: Domain of unknown function DUF1849; KEGG: rec:RHECIAT_CH0002005 hypothetical protein YP_002281095.1 PFAM: toxic anion resistance family protein; KEGG: rec:RHECIAT_CH0002006 toxic anion resistance protein YP_002281096.1 SMART: von Willebrand factor type A; KEGG: rec:RHECIAT_CH0002007 hypothetical protein YP_002281097.1 KEGG: rec:RHECIAT_CH0002008 hypothetical protein YP_002281098.1 KEGG: rec:RHECIAT_CH0002009 hypothetical protein YP_002281099.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002281100.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002281101.1 Catalyzes the phosphorylation of UMP to UDP YP_002281102.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002281103.1 KEGG: rec:RHECIAT_CH0002014 undecaprenyl pyrophosphate synthetase protein; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_002281104.1 PFAM: phosphatidate cytidylyltransferase; KEGG: rec:RHECIAT_CH0002015 phosphatidate cytidylyltransferase protein YP_002281105.1 KEGG: rec:RHECIAT_CH0002016 metallopeptidase protein; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_002281106.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: hypothetical protein; surface antigen variable number repeat protein; KEGG: rec:RHECIAT_CH0002017 outer membrane lipoprotein YP_002281107.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_002281108.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002281109.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_002281110.1 PFAM: protein of unknown function DUF1009; KEGG: ret:RHE_CH01924 hypothetical protein YP_002281111.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_002281112.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_002281113.1 PFAM: ComEC/Rec2-related protein; KEGG: rec:RHECIAT_CH0002024 hypothetical protein YP_002281114.1 Represses a number of genes involved in the response to DNA damage YP_002281115.1 KEGG: rec:RHECIAT_CH0002026 hypothetical protein YP_002281116.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002281117.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002281118.1 PFAM: septum formation initiator; KEGG: ret:RHE_CH01932 septum formation initiator protein YP_002281119.1 TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component; KEGG: rec:RHECIAT_CH0002030 pyruvate dehydrogenase (acetyl-transferring) protein, subunit alpha YP_002281120.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_002281121.1 KEGG: rec:RHECIAT_CH0002032 dihydrolipoamide S-acetyltransferase protein; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_002281122.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rec:RHECIAT_CH0002033 probable arylesterase protein YP_002281123.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002034 acetyltransferase protein YP_002281124.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002281125.1 KEGG: ret:RHE_CH01939 hypothetical conserved membrane protein YP_002281126.1 PFAM: transglycosylase; KEGG: rec:RHECIAT_CH0002037 transglycosylase YP_002281127.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002281128.1 KEGG: ret:RHE_PD00322 probable insertion sequence transposase protein YP_002281129.1 KEGG: ret:RHE_CH01942 DNA topology modulation kinase FlaR-like protein YP_002281130.1 PFAM: cyclase/dehydrase; KEGG: rec:RHECIAT_CH0002041 oligoketide cyclase/dehydrase protein YP_002281131.1 PFAM: damage inducible protein CinA; KEGG: rec:RHECIAT_CH0002042 competence-damage inducible protein (nucleotide-utilizing enzyme) YP_002281132.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations YP_002281133.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase; KEGG: rec:RHECIAT_CH0002044 tRNA-dihydrouridine synthase protein YP_002281134.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: ret:RHE_CH01947 nitrogen regulation (two-component sensor histidine kinase) protein YP_002281135.1 KEGG: rec:RHECIAT_CH0002046 two-component response regulator nitrogen regulation protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002281136.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002053 probable aldo/keto reductase protein (voltage-gated potassium channel beta subunit) YP_002281137.1 catalyzes the formation of pyruvate from serine YP_002281138.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002055 amino acid ABC transporter ATP-binding protein YP_002281139.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002057 amino acid ABC transporter permease YP_002281140.1 PFAM: extracellular solute-binding protein family 3; KEGG: rec:RHECIAT_CH0002058 amino acid ABC transporter substrate-binding protein YP_002281141.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002059 probable transcriptional regulator protein, LysR family YP_002281142.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rec:RHECIAT_CH0002060 serine hydroxymethyltransferase protein YP_002281143.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: rec:RHECIAT_CH0002061 folD2 YP_002281144.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_002281145.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: rec:RHECIAT_CH0002063 two-component sensor histidine kinase nitrogen regulation protein YP_002281146.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0002064 two-component response regulator nitrogen regulation protein YP_002281147.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_002281148.1 Stimulates the elongation of poly(A) tails YP_002281149.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: ret:RHE_CH01955 GTP-binding protein YP_002281150.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_002281151.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rec:RHECIAT_CH0002069 guanine/cytosine deaminase protein YP_002281152.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rec:RHECIAT_CH0002071 uroporphyrin-III C-methyltransferase protein YP_002281153.1 KEGG: ret:RHE_CH01959 hypothetical protein YP_002281154.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rec:RHECIAT_CH0002073 sulfite reductase (NADPH) protein YP_002281155.1 PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH01961 hypothetical protein YP_002281156.1 TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rec:RHECIAT_CH0002075 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase protein YP_002281157.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0002076 malonate transporter YP_002281158.1 PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0000645 beta-lactamase family protein YP_002281159.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: rec:RHECIAT_CH0002077 cytochrome C biogenesis protein YP_002281160.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: bja:blr4000 transcriptional regulatory protein YP_002281161.1 PFAM: CsbD family protein; KEGG: atc:AGR_L_317 hypothetical protein YP_002281162.1 KEGG: rec:RHECIAT_CH0002084 hypothetical protein YP_002281163.1 KEGG: rec:RHECIAT_PC0000828 hypothetical protein YP_002281164.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_0304 LysR family transcriptional regulator YP_002281165.1 PFAM: monooxygenase FAD-binding; KEGG: rec:RHECIAT_CH0002085 probable monooxygenase (tetracycline 6-hydroxylase) protein YP_002281166.1 KEGG: rec:RHECIAT_CH0002086 hypothetical protein YP_002281167.1 PFAM: protein of unknown function DUF982; KEGG: ret:RHE_CH02030 hypothetical protein YP_002281168.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002093 gualylate cyclase protein YP_002281169.1 PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_CH0002094 hypothetical protein YP_002281170.1 KEGG: sme:SMb20273 hypothetical protein YP_002281171.1 KEGG: ret:RHE_CH02033 hypothetical protein YP_002281172.1 PFAM: monooxygenase FAD-binding; KEGG: ret:RHE_CH02034 hypothetical protein YP_002281173.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH02035 probable transcriptional regulator protein, MarR family YP_002281174.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: aav:Aave_2976 PAS/PAC sensor hybrid histidine kinase YP_002281175.1 PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_PC0000075 non-heme haloperoxidase protein YP_002281176.1 PFAM: endoribonuclease L-PSP; KEGG: rec:RHECIAT_PC0000076 translation initiation inhibitor protein YP_002281177.1 PFAM: cation transport protein ChaC; KEGG: rec:RHECIAT_PC0000077 hypothetical protein YP_002281178.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PC0000078 transcriptional regulator protein, LysR family YP_002281179.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMa0374 dioxygenase/lyase YP_002281180.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_pAT_302 hypothetical protein YP_002281181.1 PFAM: isochorismatase hydrolase; KEGG: sme:SMa0376 hydrolase YP_002281182.1 PFAM: protein of unknown function DUF1427; KEGG: sme:SMa5018 hypothetical protein YP_002281183.1 PFAM: amidohydrolase; KEGG: sme:SMa0380 hydrolase YP_002281184.1 PFAM: DoxX family protein; KEGG: sme:SMa5019 hypothetical protein YP_002281185.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: sme:SMa0383 hypothetical protein YP_002281186.1 PFAM: endoribonuclease L-PSP; KEGG: rec:RHECIAT_PC0000093 threonine degradation-translation initiation inhibitor protein YP_002281187.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rec:RHECIAT_PC0000094 probable NAD(P)H dehydrogenase protein YP_002281188.1 PFAM: FAD linked oxidase; KEGG: rec:RHECIAT_PC0000095 FAD linked oxidase protein YP_002281189.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_002281190.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_PC0000097 probable nitrate/sulfonate/bicarbonate ABC transporter permease YP_002281191.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH02045 probable nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein YP_002281192.1 PFAM: NMT1/THI5 like domain protein; KEGG: rec:RHECIAT_PC0000099 probable nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein YP_002281193.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_PC0000100 probable transcriptional regulator protein, LysR family YP_002281194.1 PFAM: creatininase; KEGG: rec:RHECIAT_PC0000101 probable creatininase protein YP_002281195.1 KEGG: rec:RHECIAT_CH0002096 hypothetical protein YP_002281196.1 KEGG: rec:RHECIAT_CH0002097 hypothetical protein YP_002281197.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0002098 dehydrogenase protein YP_002281198.1 PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0002099 probable transcriptional regulator protein, ROK family YP_002281199.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH02053 probable sugar ABC transporter substrate-binding protein YP_002281200.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002101 probable sugar ABC transporter permease YP_002281201.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02055 probable sugar ABC transporter permease YP_002281202.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: ret:RHE_CH02056 probable sugar ABC transporter ATP-binding protein YP_002281203.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_002281204.1 PFAM: Mannonate dehydratase; KEGG: rec:RHECIAT_CH0002105 mannonate dehydratase protein YP_002281205.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_CH02059 probable transcriptional regulator protein, GntR family YP_002281206.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0002107 dipeptide ABC transporter substrate-binding protein YP_002281207.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02061 dipeptide ABC transporter permease protein YP_002281208.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02062 dipeptide ABC transporter permease protein YP_002281209.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH02063 dipeptide ABC transporter ATP-binding protein YP_002281210.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH02064 dipeptide ABC transporter ATP-binding protein YP_002281211.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH02066 probable transcriptional regulator protein, LacI family YP_002281212.1 KEGG: ret:RHE_CH02067 hypothetical protein YP_002281213.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH02068 probable sugar ABC transporter substrate-binding protein YP_002281214.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02069 probable sugar ABC transporter permease YP_002281215.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002117 probable sugar ABC transporter permease YP_002281216.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002118 probable sugar ABC transporter ATP-binding protein YP_002281217.1 KEGG: rec:RHECIAT_CH0002119 hypothetical protein YP_002281218.1 KEGG: rec:RHECIAT_CH0002121 hypothetical protein YP_002281219.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0002123 protein secretion protein, HylD family YP_002281220.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002124 ABC transporter ATP-binding protein YP_002281221.1 PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0002125 ABC transporter permease YP_002281222.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: rde:RD1_1638 transcriptional activator protein RaiR YP_002281223.1 KEGG: pfo:PflO1_1509 hemolysin-type calcium-binding region YP_002281224.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_002281225.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_CH02077 probable transcriptional regulator protein, GntR family YP_002281226.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: rec:RHECIAT_CH0002128 ferredoxin-NADP+ reductase protein YP_002281227.1 KEGG: rec:RHECIAT_CH0002129 phosphatidylcholine synthase protein YP_002281228.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002130 quinone oxidoreductase protein YP_002281229.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002131 probable ABC transporter ATP-binding protein YP_002281230.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0002132 probable ABC transporter permease YP_002281231.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH02083 probable sugar ABC transporter permease YP_002281232.1 PFAM: basic membrane lipoprotein; KEGG: rec:RHECIAT_CH0002134 ABC transporter substrate-binding protein YP_002281233.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0002135 probable sugar ABC transporter substrate-binding protein YP_002281234.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH02086 probable sugar ABC transporter ATP-binding protein YP_002281235.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH02087 probable sugar ABC transporter permease YP_002281236.1 membrane component of a sugar ABC transporter system YP_002281237.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_CH02089 probable transcriptional regulator protein, GntR family YP_002281238.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002281239.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002281240.1 PFAM: protein of unknown function DUF502; KEGG: rec:RHECIAT_CH0002142 hypothetical protein YP_002281241.1 catalyzes branch migration in Holliday junction intermediates YP_002281242.1 PFAM: protein of unknown function DUF339; KEGG: rec:RHECIAT_CH0002144 hypothetical protein YP_002281243.1 KEGG: rec:RHECIAT_CH0002145 transcription-repair coupling factor (TrcF) protein; TIGRFAM: transcription-repair coupling factor; PFAM: helicase; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases YP_002281244.1 PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0002146 osmotically inducible OsmC-like protein YP_002281245.1 PFAM: DSBA oxidoreductase; KEGG: rec:RHECIAT_CH0002149 dithiol-disulfide isomerase protein (involved in polyketide biosynthesis) YP_002281246.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0002150 peptide ABC transporter substrate-binding protein YP_002281247.1 PFAM: invasion associated locus B family protein; KEGG: rec:RHECIAT_CH0002151 invasion-associated protein YP_002281248.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: ret:RHE_CH02101 hypothetical protein YP_002281249.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: rec:RHECIAT_CH0002153 glutamine synthetase protein YP_002281250.1 PFAM: nitrogen regulatory protein P-II; KEGG: rec:RHECIAT_CH0002154 nitrogen regulatory protein P-II YP_002281251.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: rec:RHECIAT_CH0002155 carbohydrate kinase protein YP_002281252.1 PFAM: protein of unknown function DUF72; KEGG: rec:RHECIAT_CH0002156 hypothetical protein YP_002281253.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02106 probable acetyltransferase protein YP_002281254.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrsubunit betas scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002281255.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002281256.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rec:RHECIAT_CH0002160 probable multiple antibiotic resistance transporter YP_002281257.1 negatively supercoils closed circular double-stranded DNA YP_002281258.1 KEGG: ret:RHE_CH02111 hypothetical protein YP_002281259.1 KEGG: rec:RHECIAT_CH0002163 hypothetical protein YP_002281260.1 KEGG: ret:RHE_CH02112 hypothetical protein YP_002281261.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002281262.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rec:RHECIAT_CH0002166 peptidyl-prolyl cis-trans isomerase A signal peptide protein YP_002281263.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: rec:RHECIAT_CH0002167 peptidyl-prolyl cis-trans isomerase B signal peptide protein YP_002281264.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002281265.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002281266.1 PFAM: acyltransferase 3; KEGG: ret:RHE_CH02118 acetyltransferase protein YP_002281267.1 KEGG: ret:RHE_CH02119 hypothetical protein YP_002281268.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_002281269.1 PFAM: helix-turn-helix HxlR type; KEGG: rec:RHECIAT_CH0002173 probable transcriptional regulator protein YP_002281270.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002174 hydrolase protein YP_002281271.1 PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0002175 probable myo-inositol monophosphatase protein YP_002281272.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: ret:RHE_CH02124 iron(III) ABC transporter ATP-binding protein YP_002281273.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002177 iron(III) ABC transporter permease YP_002281274.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002178 iron(III) ABC transporter substrate-binding protein YP_002281275.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002179 iron(III) ABC transporter substrate-binding protein YP_002281276.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_CH0002180 two-component response regulator protein YP_002281277.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH02129 probable two-component sensor histidine kinase protein YP_002281278.1 KEGG: rec:RHECIAT_CH0002182 hypothetical protein YP_002281279.1 KEGG: rec:RHECIAT_CH0002184 hypothetical protein YP_002281280.1 KEGG: rec:RHECIAT_CH0002185 hypothetical protein YP_002281281.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0002186 metallophosphoesterase protein YP_002281282.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002187 sugar ABC transporter ATP-binding protein YP_002281283.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002188 sugar ABC transporter permease YP_002281284.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002189 sugar ABC transporter permease YP_002281285.1 PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mll1712 sugar binding protein of ABC transporter YP_002281286.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0002191 transcriptional regulator protein, LacI family YP_002281287.1 PFAM: peptidase M16 domain protein; KEGG: rec:RHECIAT_CH0002192 probable peptidase/protease protein YP_002281288.1 PFAM: major facilitator superfamily MFS_1; KEGG: smd:Smed_1275 major facilitator superfamily MFS_1 YP_002281289.1 PFAM: arginase/agmatinase/formiminoglutamase; KEGG: mlo:mll0412 probable agmatinase YP_002281290.1 PFAM: protein of unknown function DUF205; KEGG: cak:Caul_3589 protein of unknown function DUF205 YP_002281291.1 PFAM: transcriptional regulator; hypothetical protein; hypothetical protein; KEGG: rec:RHECIAT_CH0002194 transcriptional regulator protein YP_002281292.1 PFAM: major facilitator superfamily MFS_1; KEGG: oan:Oant_4451 major facilitator superfamily MFS_1 YP_002281293.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0002051 amine oxidase protein YP_002281294.1 KEGG: rec:RHECIAT_CH0002052 hypothetical protein YP_002281295.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3367 short-chain dehydrogenase/reductase SDR YP_002281296.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bac:BamMC406_6156 transcriptional regulator, LysR family YP_002281297.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: ret:RHE_CH02137 hypothetical protein YP_002281298.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: rec:RHECIAT_CH0002196 adenylate/guanylate cyclase protein YP_002281299.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; KEGG: ret:RHE_CH02148 sensory box/GGDEF family protein YP_002281300.1 PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00190 insertion sequence transposase protein YP_002281301.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ret:RHE_CH02151 mechanosensitive ion channel protein YP_002281302.1 PFAM: Epoxide hydrolase domain protein; KEGG: reh:H16_A1793 epoxide hydrolase YP_002281303.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:bll3416 hypothetical protein YP_002281304.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: smd:Smed_5569 LysR family transcriptional regulator YP_002281305.1 PFAM: protein of unknown function DUF599; KEGG: ccr:CC_1018 hypothetical protein YP_002281306.1 PFAM: hypothetical protein; KEGG: mex:Mext_0437 PAS sensor protein YP_002281307.1 KEGG: ret:RHE_CH02152 hypothetical protein YP_002281308.1 KEGG: ret:RHE_CH02153 hypothetical protein YP_002281309.1 KEGG: ret:RHE_PD00322 probable insertion sequence transposase protein YP_002281310.1 PFAM: integral membrane protein TerC; KEGG: ret:RHE_CH02154 transporter, TerC family YP_002281311.1 PFAM: beta-lactamase; KEGG: ret:RHE_CH02155 probable metal-dependent hydrolase protein YP_002281312.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: rec:RHECIAT_CH0002241 probable deoxyribonuclease protein, TatD family YP_002281313.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002281314.1 PFAM: protein of unknown function DUF81; KEGG: rec:RHECIAT_CH0002243 hypothetical conserved membrane protein YP_002281315.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA YP_002281316.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002281317.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rec:RHECIAT_CH0002246 D-alanyl-D-alanine carboxypeptidase protein YP_002281318.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: rec:RHECIAT_CH0002247 lipoprotein A precursor protein YP_002281320.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: atc:AGR_C_3960 hypothetical protein YP_002281321.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002252 transporter YP_002281322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002253 probable transcriptional regulator protein, LysR family YP_002281323.1 PFAM: PhnA protein; KEGG: rec:RHECIAT_CH0002254 alkilphosphonate uptake protein YP_002281324.1 PFAM: transglutaminase; KEGG: rec:RHECIAT_CH0002255 transglutaminase-like protein YP_002281325.1 PFAM: transglutaminase; transglutaminase domain protein; KEGG: rec:RHECIAT_CH0002256 transglutaminase-like protein YP_002281327.1 KEGG: rec:RHECIAT_CH0002257 hypothetical protein YP_002281329.1 PFAM: transglycosylase; KEGG: ret:RHE_CH02171 hypothetical conserved membrane protein YP_002281330.1 KEGG: rec:RHECIAT_CH0002259 hypothetical protein YP_002281331.1 KEGG: rec:RHECIAT_CH0002260 peptidyl-prolyl cis-trans isomerase D signal peptide protein YP_002281332.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002281333.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002281334.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: ret:RHE_CH02176 molybdenum cofactor biosynthesis protein YP_002281335.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: rec:RHECIAT_CH0002264 molybdopterin biosynthesis protein YP_002281336.1 PFAM: methyltransferase small; KEGG: ret:RHE_CH02178 SAM-dependent methyltransferease protein YP_002281337.1 PFAM: helicase; DbpA RNA-binding domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: ret:RHE_CH02179 ATP-dependent RNA helicase protein YP_002281338.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: ret:RHE_CH02180 adenylate cyclase protein YP_002281339.1 KEGG: rec:RHECIAT_CH0002268 hypothetical protein YP_002281340.1 PFAM: citrate synthase; KEGG: rec:RHECIAT_CH0002269 citrate synthase protein YP_002281341.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle YP_002281342.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: mxa:MXAN_3391 Aha1 domain family protein YP_002281343.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002281344.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rec:RHECIAT_CH0002272 probable protein-export translocase protein YP_002281345.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002281346.1 KEGG: rec:RHECIAT_CH0002274 hypothetical protein YP_002281347.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002281348.1 KEGG: rec:RHECIAT_CH0002276 hypothetical protein YP_002281349.1 PFAM: protein of unknown function UPF0118; KEGG: ret:RHE_CH02189 permease YP_002281350.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002278 probable acetyltransferase protein YP_002281351.1 KEGG: rec:RHECIAT_CH0002279 hypothetical protein YP_002281352.1 KEGG: rec:RHECIAT_CH0002280 hypothetical protein YP_002281353.1 KEGG: ret:RHE_CH02193 hypothetical protein YP_002281354.1 PFAM: nitroreductase; KEGG: ret:RHE_CH02194 nitroreductase protein YP_002281355.1 KEGG: rec:RHECIAT_CH0002283 hypothetical protein YP_002281356.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002281357.1 PFAM: protein of unknown function DUF1697; KEGG: rec:RHECIAT_CH0002286 hypothetical protein YP_002281358.1 PFAM: protein of unknown function DUF37; KEGG: rec:RHECIAT_CH0002287 hypothetical protein YP_002281359.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: rec:RHECIAT_CH0002288 nitrogen fixation protein YP_002281360.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002281361.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002281362.1 PFAM: patatin; KEGG: rec:RHECIAT_CH0002291 phosphoesterase protein YP_002281363.1 PFAM: CBS domain containing protein; KEGG: rec:RHECIAT_CH0002292 inosine-5'-monophosphate dehydrogenase protein YP_002281364.1 PFAM: rhomboid family protein; KEGG: rec:RHECIAT_CH0002293 peptidase protein YP_002281365.1 PFAM: protein of unknown function DUF1457; KEGG: rec:RHECIAT_CH0002295 hypothetical protein YP_002281366.1 PFAM: type IV pilus assembly PilZ; KEGG: rec:RHECIAT_CH0002296 hypothetical protein YP_002281367.1 KEGG: ret:RHE_CH02208 proline iminopeptidase protein; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_002281368.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: ret:RHE_CH02209 hypothetical protein YP_002281369.1 KEGG: rec:RHECIAT_CH0002299 hypothetical protein YP_002281370.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; sporulation domain protein; KEGG: ret:RHE_CH02211 probable serine-type D-Ala-D-Ala carboxypeptidase protein YP_002281371.1 KEGG: ret:RHE_CH02212 hypothetical protein YP_002281372.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0002302 hypothetical protein YP_002281373.1 KEGG: ret:RHE_CH02214 L-serine dehydratase protein; TIGRFAM: L-serine dehydratase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_002281374.1 PFAM: protein of unknown function DUF599; KEGG: ret:RHE_CH02215 hypothetical conserved membrane protein YP_002281375.1 PFAM: protein of unknown function DUF1624; KEGG: rec:RHECIAT_CH0002325 hypothetical conserved membrane protein YP_002281376.1 PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; KEGG: rec:RHECIAT_CH0002326 probable transcriptional regulator protein, MerR family YP_002281377.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: ret:RHE_CH02218 probable magnesium transporter YP_002281378.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002281379.1 PFAM: transporter; KEGG: rec:RHECIAT_CH0002329 hypothetical protein YP_002281380.1 KEGG: rec:RHECIAT_CH0002330 hypothetical protein YP_002281381.1 KEGG: rec:RHECIAT_CH0002331 hypothetical protein YP_002281382.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system protein H YP_002281383.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02224 probable permease YP_002281384.1 KEGG: rec:RHECIAT_CH0002335 hypothetical protein YP_002281385.1 PFAM: biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rec:RHECIAT_CH0002336 propionyl-CoA carboxylase protein, subunit alpha YP_002281386.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002337 formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein YP_002281387.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002338 fusion protein: acetyltransferase protein and hypothetical conserved protein YP_002281388.1 PFAM: protein of unknown function DUF188; KEGG: rec:RHECIAT_CH0002338 fusion protein: acetyltransferase protein and hypothetical conserved protein YP_002281389.1 PFAM: small multidrug resistance protein; KEGG: rec:RHECIAT_CH0002339 chaperone-like transmembrane protein YP_002281390.1 PFAM: DoxX family protein; KEGG: rec:RHECIAT_CH0002340 hypothetical conserved membrane protein YP_002281391.1 PFAM: carboxyl transferase; KEGG: ret:RHE_CH02232 propionyl-CoA carboxylase beta chain protein YP_002281392.1 KEGG: rec:RHECIAT_CH0002342 hypothetical protein YP_002281393.1 PFAM: ATPase; KEGG: ret:RHE_CH02234 hypothetical protein YP_002281394.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rec:RHECIAT_CH0002344 phosphoglycolate phosphatase protein YP_002281395.1 TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; KEGG: rec:RHECIAT_CH0002345 RNA-pseudouridine synthase protein, ribosomal large subunit C YP_002281396.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002281397.1 KEGG: rec:RHECIAT_CH0002347 hypothetical protein YP_002281398.1 PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: rec:RHECIAT_CH0002348 hypothetical protein YP_002281399.1 KEGG: rec:RHECIAT_CH0002349 hypothetical protein YP_002281400.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002281401.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002281402.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_002281403.1 PFAM: glycoside hydrolase family 25; KEGG: rec:RHECIAT_CH0002353 cell-wall lytic enzyme YP_002281404.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ret:RHE_CH02245 probable flagellar basal body rod protein YP_002281405.1 TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rec:RHECIAT_CH0002356 hypothetical protein YP_002281406.1 TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: ret:RHE_CH02248 hypothetical protein YP_002281407.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002358 selenocysteine lyase protein YP_002281408.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: ret:RHE_CH02250 ABC transporter involved in Fe-S cluster assembly, permease YP_002281409.1 KEGG: ret:RHE_CH02251 ABC transporter involved in Fe-S cluster assembly, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA YP_002281410.1 KEGG: rec:RHECIAT_CH0002361 hypothetical protein YP_002281411.1 with SufCD activates cysteine desulfurase SufS YP_002281412.1 PFAM: aminotransferase class V; KEGG: rec:RHECIAT_CH0002363 cysteine desulfurase protein (nitrogenase cofactor synthesis protein) YP_002281413.1 KEGG: ret:RHE_CH02255 alpha/beta hydrolase protein YP_002281414.1 PFAM: acyltransferase 3; KEGG: rec:RHECIAT_CH0002365 nodulation protein X (probable sugar acetylase) YP_002281415.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002366 acetyltransferase protein YP_002281416.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002281417.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002281418.1 KEGG: rec:RHECIAT_CH0002369 hypothetical protein YP_002281419.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rec:RHECIAT_CH0002370 maltose alpha-D-glucosyltransferase protein YP_002281420.1 KEGG: rec:RHECIAT_CH0002371 hypothetical protein YP_002281421.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: ret:RHE_CH02262 bacterioferritin comigratory protein YP_002281422.1 PFAM: protein of unknown function DUF455; KEGG: rec:RHECIAT_CH0002373 hypothetical protein YP_002281423.1 PFAM: peptidase M23; KEGG: rec:RHECIAT_CH0002374 probable metalloendopeptidase protein YP_002281424.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ret:RHE_CH02265 ATP dependent RNA helicase protein YP_002281425.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002376 hydrolase protein, MutT/NUDIX family YP_002281426.1 PFAM: TfoX domain protein; KEGG: rec:RHECIAT_CH0002377 regulator of competence-specific genes protein, TfoX family YP_002281427.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_CH0002378 probable 4-hydroxyphenylacetate 3-monooxygenase protein YP_002281428.1 PFAM: extracellular ligand-binding receptor; KEGG: rec:RHECIAT_CH0002379 amino acid ABC transporter substrate-binding protein YP_002281429.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: rec:RHECIAT_CH0002380 D-ribulose-5 phosphate 3-epimerase protein YP_002281430.1 KEGG: ret:RHE_CH02271 hypothetical protein YP_002281431.1 KEGG: rec:RHECIAT_CH0002382 hypothetical protein YP_002281432.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002281433.1 PFAM: protein of unknown function DUF1452; KEGG: rec:RHECIAT_CH0002384 hypothetical conserved membrane protein YP_002281434.1 KEGG: rec:RHECIAT_CH0002385 hypothetical conserved membrane protein YP_002281435.1 PFAM: protein of unknown function DUF1234; KEGG: rec:RHECIAT_CH0002386 hypothetical protein YP_002281436.1 KEGG: rec:RHECIAT_CH0002387 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; hypothetical protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002281437.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002281438.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_002281439.1 in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown YP_002281440.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002281441.1 KEGG: ret:RHE_CH02282 hypothetical protein YP_002281442.1 KEGG: rec:RHECIAT_CH0002393 hypothetical protein YP_002281443.1 PFAM: regulatory protein GntR HTH; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002394 probable transcriptional regulator protein, GntR family YP_002281444.1 KEGG: rec:RHECIAT_CH0002395 hypothetical protein YP_002281445.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002281446.1 PFAM: BolA family protein; KEGG: rec:RHECIAT_CH0002397 probable stress-induced morphogen protein, BolA family YP_002281447.1 KEGG: rec:RHECIAT_CH0002398 hypothetical protein YP_002281448.1 KEGG: smd:Smed_1507 hypothetical protein YP_002281449.1 PFAM: cytochrome C class I; KEGG: lbf:LBF_3080 hypothetical protein YP_002281450.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: ret:RHE_CH02304 glutaredoxin protein YP_002281451.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002401 probable multidrug resistance transporter YP_002281452.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002402 probable multidrug resistance transporter YP_002281453.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002403 acetyltransferase protein YP_002281454.1 PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0002404 inositol monophosphatase protein YP_002281455.1 PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0002405 inositol monophosphatase protein YP_002281456.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_002281457.1 catalyzes the formation of glutamate from glutamine YP_002281458.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002281459.1 SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002409 hypothetical protein YP_002281460.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002281461.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ret:RHE_CH02315 probable tRNA/rRNA methyltransferase protein YP_002281462.1 KEGG: rec:RHECIAT_CH0002412 hypothetical conserved membrane protein YP_002281463.1 KEGG: rec:RHECIAT_CH0002413 hypothetical protein YP_002281464.1 Converts isocitrate to alpha ketoglutarate YP_002281465.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02319 probable acetyltransferase protein YP_002281466.1 PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH02320 glutathione S-transferase protein YP_002281467.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: rec:RHECIAT_CH0002417 probable transcriptional regulator protein, AraC family YP_002281468.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002281469.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002281470.1 PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0002421 ribokinase protein YP_002281471.1 PFAM: indigoidine synthase A family protein; KEGG: ret:RHE_CH02325 hypothetical protein YP_002281472.1 KEGG: rec:RHECIAT_CH0002423 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; SMART: PAS domain containing protein YP_002281473.1 KEGG: rec:RHECIAT_CH0002424 hypothetical protein YP_002281474.1 PFAM: protein of unknown function DUF1062; KEGG: ret:RHE_CH02328 hypothetical protein YP_002281475.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: rec:RHECIAT_CH0002426 DnaK suppressor protein YP_002281476.1 PFAM: phosphoglycerate mutase; KEGG: ret:RHE_CH02330 phosphohistidine phosphatase protein YP_002281477.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rec:RHECIAT_CH0002429 hypothetical protein YP_002281478.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0002430 hypothetical conserved membrane protein YP_002281479.1 KEGG: rec:RHECIAT_CH0002431 hypothetical protein YP_002281480.1 KEGG: ret:RHE_CH02334 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinas E protein; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_002281481.1 TIGRFAM: dihydroneopterin aldolase; KEGG: rec:RHECIAT_CH0002433 dihydroneopterin aldolase protein YP_002281482.1 KEGG: ret:RHE_CH02336 dihydropteroate synthase protein; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_002281483.1 PFAM: protein of unknown function DUF922; KEGG: rec:RHECIAT_CH0002435 hypothetical protein YP_002281484.1 PFAM: ferredoxin; KEGG: ret:RHE_CH02338 ferredoxin 2Fe-2S FDII electron transport iron-sulfur protein YP_002281485.1 PFAM: Hpt domain protein; KEGG: rec:RHECIAT_CH0002437 hypothetical protein YP_002281486.1 PFAM: Apolipoprotein A1/A4/E; KEGG: rec:RHECIAT_CH0002438 hypothetical protein YP_002281487.1 PFAM: isochorismatase hydrolase; KEGG: ret:RHE_CH02341 probable isochorismatase protein YP_002281488.1 KEGG: rec:RHECIAT_CH0002440 hypothetical protein YP_002281489.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: ret:RHE_CH02343 hypothetical protein YP_002281490.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: rec:RHECIAT_CH0002441 probable D-alanyl-D-alanine carboxypeptidase protein YP_002281491.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: rec:RHECIAT_CH0002442 sensory box/GGDEF family protein YP_002281492.1 KEGG: ret:RHE_CH02346 ABC transporter YP_002281493.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0002444 ABC transporter substrate-binding protein YP_002281494.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002445 probable ABC transporter ATP-binding protein YP_002281495.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: rec:RHECIAT_CH0002446 probable ABC transporter permease YP_002281496.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_CH02350 probable muconate cycloisomerase I protein YP_002281497.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02351 3-phenylpropionic acid permease YP_002281498.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0002449 UDP-2,3-diacylglucosamine hydrolase protein YP_002281499.1 PFAM: phosphoglycerate mutase; KEGG: ret:RHE_CH02353 phosphoglycerate mutase protein YP_002281500.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rru:Rru_A1117 secretion protein HlyD YP_002281501.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_C_4219 hypothetical protein YP_002281502.1 PFAM: FAD linked oxidase; Berberine/berberine domain protein; KEGG: rec:RHECIAT_CH0002451 probable FAD-dependent oxidoreductase protein YP_002281503.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_002281504.1 PFAM: ribonuclease H; KEGG: ret:RHE_CH02363 probable ribonuclease H protein YP_002281505.1 KEGG: ret:RHE_CH02367 hypothetical protein YP_002281506.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: rec:RHECIAT_CH0002455 probable nitroreductase protein YP_002281507.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll8348 multidrug efflux protein YP_002281508.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: smd:Smed_1613 methyl-accepting chemotaxis sensory transducer YP_002281509.1 KEGG: vco:VC0395_0102 hypothetical protein YP_002281510.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002281511.1 KEGG: rec:RHECIAT_CH0002458 hypothetical protein YP_002281512.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0002459 periplasmic component of the Tol biopolymer transporter YP_002281513.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002281514.1 PFAM: protein of unknown function DUF1003; KEGG: rec:RHECIAT_CH0002461 hypothetical conserved membrane protein YP_002281515.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH02373 hypothetical protein YP_002281516.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: ret:RHE_CH02374 multidrug resistance ABC transporter ATP-binding and permease YP_002281517.1 KEGG: rec:RHECIAT_CH0002465 3-deoxy-7-phosphoheptulonate synthase protein, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_002281518.1 KEGG: rec:RHECIAT_CH0002466 hypothetical protein YP_002281519.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_002281520.1 KEGG: rec:RHECIAT_CH0002468 hypothetical protein YP_002281521.1 catalyzes the hydrolysis of acylphosphate YP_002281522.1 KEGG: ret:RHE_CH02379 hypothetical protein YP_002281523.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002281524.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_002281525.1 PFAM: peptidoglycan-binding protein; KEGG: rec:RHECIAT_CH0002473 hypothetical protein YP_002281526.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002281527.1 KEGG: rec:RHECIAT_CH0002476 autoaggregation protein (adhering protein) YP_002281528.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: rec:RHECIAT_CH0002477 fumarate hydratase protein, class I YP_002281529.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ret:RHE_CH02386 sensory box/GGDEF family protein YP_002281530.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: ret:RHE_CH02387 pyridoxine biosynthesis protein YP_002281531.1 KEGG: rec:RHECIAT_CH0002481 hypothetical protein YP_002281532.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0002482 probable transcriptional regulator protein, MarR family YP_002281533.1 PFAM: low temperature requirement A; KEGG: rec:RHECIAT_CH0002483 hypothetical conserved membrane protein YP_002281534.1 PFAM: protein of unknown function DUF971; KEGG: rec:RHECIAT_CH0002484 hypothetical protein YP_002281535.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_002281536.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002486 probable ubiquinone/menaquinone biosynthesis methyltransferase protein YP_002281537.1 PFAM: periplasmic binding protein; KEGG: rec:RHECIAT_CH0002487 iron ABC transporter substrate-binding protein YP_002281538.1 PFAM: transporter permease; KEGG: rec:RHECIAT_CH0002488 iron ABC transporter permease YP_002281539.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002489 iron ABC transporter ATP-binding protein YP_002281540.1 PFAM: sugar-binding domain protein; KEGG: rec:RHECIAT_CH0002490 probable transcriptional regulator protein YP_002281541.1 PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_CH02396 glycerol kinase protein YP_002281542.1 PFAM: transketolase; transketolase domain protein; KEGG: rec:RHECIAT_CH0002492 transketolase protein, C-terminal subunit YP_002281543.1 PFAM: transketolase; KEGG: atc:AGR_C_3490 probable transketolase YP_002281544.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH02399 ribose ABC transporter permease YP_002281545.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0002495 ribose ABC transporter substrate-binding protein YP_002281546.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002496 ribose ABC transporter ATP-binding protein YP_002281547.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0002497 probable short chain dehydrogenase protein YP_002281548.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH02403 probable short chain dehydrogenase protein YP_002281549.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH02404 short chain dehydrogenase YP_002281550.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02405 hypothetical conserved membrane protein YP_002281551.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: ret:RHE_CH02406 molybdopterin-guanine dinucleotide biosynthesis protein YP_002281552.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: rec:RHECIAT_CH0002503 molybdopterin-guanine dinucleotide biosynthesis protein YP_002281553.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: rec:RHECIAT_CH0002504 two-component sensor histidine kinase protein YP_002281554.1 KEGG: rec:RHECIAT_CH0002505 probable protein kinase protein; PFAM: KaiA binding; SMART: ATPase AAA YP_002281555.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002506 probable transcriptional regulator protein, LysR family YP_002281556.1 PFAM: cupin; KEGG: rec:RHECIAT_CH0002507 hypothetical protein YP_002281557.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002508 aldo-keto reductase protein YP_002281558.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0002509 maleylpyruvate isomerase protein YP_002281559.1 PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0002510 probable stress-induced OsmC-like protein YP_002281560.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0002511 probable two-component sensor histidine kinase protein YP_002281561.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_CH0002512 probable two-component response regulator protein YP_002281562.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH02414 probable epoxide hydrolase protein YP_002281563.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; cytochrome C biogenesis protein transmembrane region; redoxin; KEGG: rec:RHECIAT_CH0002514 cytochrome C biogenesis protein YP_002281564.1 KEGG: rec:RHECIAT_CH0002515 hydrolase protein YP_002281565.1 PFAM: OmpA/MotB domain protein; KEGG: ret:RHE_CH02417 outer membrane protein, OmpA family YP_002281566.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: ret:RHE_CH02418 probable amino acid ABC transporter substrate-binding protein YP_002281567.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02419 probable amino acid ABC transporter permease protein YP_002281568.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002519 probable amino acid ABC transporter permease YP_002281569.1 PFAM: Usg family protein; KEGG: ret:RHE_CH02421 phosphoribosylanthranilate isomerase subunit Usg protein YP_002281570.1 KEGG: ret:RHE_CH02422 hypothetical conserved membrane protein YP_002281571.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; methyltransferase type 11; methyltransferase type 12; SMART: hypothetical protein; KEGG: ret:RHE_CH02423 methyltransferase protein YP_002281572.1 PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH02424 glutathione S-transferase protein YP_002281573.1 PFAM: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0002524 probable transcriptional regulator protein, ArsR family YP_002281574.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002525 hypothetical protein YP_002281575.1 PFAM: Domain of unknown function DUF1801; KEGG: ret:RHE_CH02427 hypothetical protein YP_002281576.1 PFAM: Domain of unknown function DUF1801; KEGG: ret:RHE_CH02428 hypothetical protein YP_002281577.1 KEGG: ret:RHE_CH02429 hypothetical protein YP_002281578.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002528 hypothetical protein YP_002281579.1 PFAM: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0002529 probable transcriptional regulator protein, ArsR family YP_002281580.1 PFAM: monooxygenase; KEGG: ret:RHE_CH02432 alkanesulfonate monooxygenase protein YP_002281581.1 KEGG: rec:RHECIAT_CH0002530 hypothetical protein YP_002281582.1 PFAM: oxidoreductase domain protein; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ret:RHE_CH02433 probable 3-hydroxyisobutyrate dehydrogenase protein YP_002281583.1 KEGG: ret:RHE_CH02434 hypothetical protein YP_002281584.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azc:AZC_1707 transcriptional regulator YP_002281585.1 PFAM: porin; KEGG: rec:RHECIAT_CH0002537 porin outer membrane protein YP_002281586.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0002539 probable transcriptional regulator protein, AsnC family YP_002281587.1 KEGG: rec:RHECIAT_CH0002540 probable uracil-DNA glycosylase protein YP_002281588.1 PFAM: nuclease (SNase domain protein); KEGG: ret:RHE_CH02440 succinoglycan biosynthesis protein YP_002281589.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0002542 probable two-component sensor histidine kinase protein YP_002281590.1 PFAM: diacylglycerol kinase; KEGG: ret:RHE_CH02442 diacylglycerol kinase protein YP_002281591.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_002281592.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_002281593.1 PFAM: protein of unknown function DUF1289; KEGG: ret:RHE_CH02445 hypothetical protein YP_002281594.1 KEGG: rec:RHECIAT_CH0002547 hypothetical protein YP_002281595.1 KEGG: ret:RHE_CH02448 hypothetical protein YP_002281596.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH02449 probable transcriptional regulator protein, LysR family YP_002281597.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0002552 probable short-chain dehydrogenase protein YP_002281598.1 PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0002553 multidrug ABC transporter permease YP_002281599.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH02452 multidrug ABC transporter ATP-binding protein YP_002281600.1 PFAM: glycoside hydrolase family 43; KEGG: rec:RHECIAT_CH0002556 beta-xylosidase protein YP_002281601.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002557 probable oxidoreductase protein YP_002281602.1 PFAM: oxidoreductase domain protein; KEGG: rec:RHECIAT_CH0002558 probable oxidoreductase protein YP_002281603.1 PFAM: xylose isomerase; KEGG: rec:RHECIAT_CH0002559 xylose isomerase domain protein YP_002281604.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: rec:RHECIAT_CH0002560 beta-mannosidase protein YP_002281605.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002561 probable sugar ABC transporter ATP-binding protein YP_002281606.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02459 probable sugar ABC transporter permease YP_002281607.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002563 probable sugar ABC transporter permease YP_002281608.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002564 probable sugar ABC transporter substrate-binding protein YP_002281609.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_CH0002565 probable transcriptional regulator protein, LacI family YP_002281610.1 KEGG: ret:RHE_CH02463 hypothetical protein YP_002281611.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002281612.1 KEGG: ret:RHE_CH02465 hypothetical protein YP_002281613.1 PFAM: methyltransferase type 12; KEGG: rec:RHECIAT_CH0002568 hypothetical protein YP_002281614.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_4417 hypothetical protein YP_002281615.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nmu:Nmul_A1215 GCN5-related N-acetyltransferase YP_002281616.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sus:acid_6739 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002281617.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002281618.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH02469 probable transcriptional regulator protein, AraC family YP_002281619.1 KEGG: rec:RHECIAT_CH0002572 hypothetical protein YP_002281620.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0002573 glyoxalase protein YP_002281621.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; KEGG: rec:RHECIAT_CH0002574 hypothetical protein YP_002281622.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002281623.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002576 probable alcohol dehydrogenase protein YP_002281624.1 FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_002281625.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002281626.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rec:RHECIAT_CH0002579 probable hydroxymyristoyl-[acyl-carrier-protein] dehydratase protein YP_002281627.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_002281628.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rec:RHECIAT_CH0002581 transcriptional regulator protein, Fnr/CRP family YP_002281629.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rec:RHECIAT_CH0002582 hypothetical protein YP_002281630.1 KEGG: rec:RHECIAT_CH0002583 hypothetical protein YP_002281631.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_002281632.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002585 cobalamin biosynthesis protein, pyridoxal-phosphate-dependent aminotransferase protein YP_002281633.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_002281634.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ret:RHE_CH02484 uroporphyrin-III C-methyltransferase protein YP_002281635.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: ret:RHE_CH02485 inosine-uridine preferring nucleoside hydrolase protein YP_002281636.1 KEGG: ret:RHE_CH02486 precorrin-3B C17-methyltransferase protein YP_002281637.1 PFAM: protein of unknown function DUF81; KEGG: ret:RHE_CH02487 hypothetical protein YP_002281638.1 KEGG: reu:Reut_A2665 hypothetical protein YP_002281639.1 PFAM: helix-turn-helix domain protein; KEGG: scl:sce3996 transcriptional regulator, Cro/CI family YP_002281640.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_002281641.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_002281642.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_CH0002593 cobalamin biosynthesis protein YP_002281643.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_002281644.1 PFAM: chloride channel core; KEGG: rec:RHECIAT_CH0002596 chloride channel protein YP_002281645.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_002281646.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002281647.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: ret:RHE_CH02495 amino acid ABC transporter substrate-binding protein YP_002281648.1 KEGG: ret:RHE_CH02496 hypothetical protein YP_002281649.1 PFAM: entericidin EcnAB; KEGG: rec:RHECIAT_CH0002602 entericidin B signal peptide protein YP_002281650.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002603 probable transcriptional regulator protein, LysR family YP_002281651.1 KEGG: rec:RHECIAT_CH0002604 hypothetical protein YP_002281652.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0002605 probable amino acid efflux protein, LysE family YP_002281653.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_002281654.1 KEGG: rec:RHECIAT_CH0002844 hypothetical protein YP_002281655.1 activates RNA polymerase to cleave back-tracked RNA during elongational pausing YP_002281656.1 PFAM: MgtC/SapB transporter; KEGG: rec:RHECIAT_CH0002608 cation transporter YP_002281657.1 KEGG: rec:RHECIAT_CH0002609 hypothetical protein YP_002281658.1 KEGG: rec:RHECIAT_CH0002610 hypothetical protein YP_002281659.1 KEGG: ret:RHE_CH02503 hypothetical protein YP_002281660.1 KEGG: rec:RHECIAT_CH0002614 hypothetical protein YP_002281661.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: rec:RHECIAT_CH0002616 probable transcriptional regulator protein, AraC family YP_002281662.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rec:RHECIAT_CH0002617 probable two-component response regulator protein YP_002281663.1 PFAM: response regulator receiver; KEGG: ret:RHE_CH02527 two-component response regulator protein YP_002281664.1 KEGG: ret:RHE_CH02529 hypothetical protein YP_002281665.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr2543 probable transcriptional regulator YP_002281666.1 PFAM: DinB family protein; KEGG: cvi:CV_0712 hypothetical protein YP_002281667.1 KEGG: mrd:Mrad2831_1376 hypothetical protein YP_002281668.1 PFAM: regulatory protein ArsR; KEGG: ret:RHE_CH02531 probable transcriptional regulator protein, ArsR family YP_002281669.1 PFAM: major intrinsic protein; KEGG: ret:RHE_CH02533 glycerol uptake transporter, MIP family YP_002281670.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: ret:RHE_CH02534 arsenate reductase protein YP_002281671.1 KEGG: ret:RHE_CH02536 hypothetical protein YP_002281672.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rec:RHECIAT_CH0002625 probable mechanosensitive channel protein YP_002281673.1 PFAM: protein of unknown function DUF924; KEGG: rec:RHECIAT_CH0002626 hypothetical protein YP_002281674.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: rec:RHECIAT_CH0002627 probable two-component sensor histidine kinase protein YP_002281675.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002628 probable transporter YP_002281676.1 PFAM: Dak kinase; Dak phosphatase; KEGG: rec:RHECIAT_CH0002635 dihydroxyacetone kinase protein YP_002281677.1 KEGG: rec:RHECIAT_CH0002642 hypothetical protein YP_002281678.1 PFAM: acetyl xylan esterase; KEGG: rec:RHECIAT_CH0002643 probable deacetylase protein YP_002281679.1 KEGG: rec:RHECIAT_CH0002645 hypothetical protein YP_002281680.1 PFAM: O-methyltransferase family 3; KEGG: gox:GOX0534 O-methyltransferase YP_002281681.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: azc:AZC_3551 siderophore-interacting protein YP_002281682.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0002648 probable transcriptional regulator protein, MarR family YP_002281683.1 PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH02542 NTP pyrophosphohydrolase protein, MutT/NUDIX family YP_002281684.1 KEGG: ret:RHE_CH02543 adenylate cyclase protein YP_002281685.1 PFAM: OsmC family protein; KEGG: ret:RHE_CH02544 organic hydroperoxide resistance protein YP_002281686.1 KEGG: rec:RHECIAT_CH0002653 hypothetical protein YP_002281687.1 PFAM: extensin; KEGG: rec:RHECIAT_CH0002654 hypothetical protein YP_002281688.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: rec:RHECIAT_CH0002655 methyl-accepting chemotaxis protein YP_002281689.1 PFAM: thioesterase; KEGG: ret:RHE_CH02548 probable acyl-CoA hydrolase protein YP_002281690.1 PFAM: protein of unknown function DUF1501; KEGG: rec:RHECIAT_CH0002658 hypothetical protein YP_002281691.1 PFAM: hypothetical protein; KEGG: ret:RHE_CH02551 hypothetical protein YP_002281692.1 PFAM: protein of unknown function DUF486; KEGG: rec:RHECIAT_CH0002660 hypothetical protein YP_002281693.1 PFAM: RDD domain containing protein YP_002281694.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A4676 major facilitator superfamily (MFS_1) transporter YP_002281695.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002661 probable SAM-dependent methyltransferase protein YP_002281696.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: rec:RHECIAT_CH0002662 hypothetical conserved membrane protein YP_002281697.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002663 probable transcriptional regulator protein, LysR family YP_002281698.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: xcv:XCV0671 sulfate permease family protein YP_002281699.1 KEGG: rec:RHECIAT_CH0002664 hypothetical protein YP_002281700.1 LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment YP_002281701.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rec:RHECIAT_CH0002667 hypothetical protein YP_002281702.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002668 probable adenylate cyclase protein YP_002281704.1 KEGG: rec:RHECIAT_CH0002671 hypothetical protein YP_002281705.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion YP_002281706.1 PFAM: protein of unknown function DUF262; KEGG: ana:alr1266 hypothetical protein YP_002281707.1 KEGG: ret:RHE_CH02565 probable acetyltransferase protein YP_002281708.1 KEGG: rec:RHECIAT_CH0002676 hypothetical protein YP_002281709.1 PFAM: protein of unknown function DUF159; KEGG: ret:RHE_CH02566 hypothetical protein YP_002281710.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02565 probable acetyltransferase protein YP_002281711.1 PFAM: Hemolysin-type calcium-binding region; cadherin; KEGG: rec:RHECIAT_PC0000856 hemolysin-type calcium-binding protein YP_002281712.1 PFAM: Hemolysin-type calcium-binding region; cadherin; KEGG: rec:RHECIAT_PC0000856 hemolysin-type calcium-binding protein YP_002281713.1 KEGG: rec:RHECIAT_CH0002678 hypothetical protein YP_002281714.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0002680 cold shock protein YP_002281715.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase; KEGG: ret:RHE_CH02569 tRNA-dihydrouridine synthase A YP_002281716.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ret:RHE_CH02570 probable serine protease protein, HtrA/DegQ family YP_002281717.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH02571 probable chloride peroxidase protein YP_002281718.1 KEGG: rec:RHECIAT_CH0002685 hypothetical protein YP_002281719.1 KEGG: rec:RHECIAT_CH0002686 hypothetical protein YP_002281720.1 PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0002688 hypothetical protein YP_002281721.1 KEGG: ret:RHE_CH02575 hypothetical protein YP_002281722.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH02576 probable two-component sensor histidine kinase protein YP_002281723.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ret:RHE_CH02577 probable two-component response regulator protein YP_002281725.1 PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_CH02065 oxidoreductase protein YP_002281726.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH01150 ABC transporter ATP-binding protein YP_002281727.1 PFAM: protein of unknown function DUF990; KEGG: ret:RHE_CH01149 transporter permease YP_002281728.1 PFAM: protein of unknown function DUF990; KEGG: ret:RHE_CH01148 transporter permease YP_002281729.1 PFAM: helix-turn-helix HxlR type; KEGG: ret:RHE_CH02578 hypothetical protein YP_002281730.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rec:RHECIAT_CH0002695 probable dihydrofolate reductase protein YP_002281731.1 KEGG: rec:RHECIAT_CH0002698 hypothetical protein YP_002281732.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: bbt:BBta_2718 transcriptional regulatory protein, MarR family with a acetyltransferase (GNAT) domain YP_002281733.1 KEGG: ret:RHE_CH02584 hypothetical protein YP_002281734.1 KEGG: rec:RHECIAT_PC0000028 hypothetical protein YP_002281735.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0002707 probable transcriptional regulator protein, AsnC family YP_002281736.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002281738.1 PFAM: regulatory protein TetR; KEGG: bra:BRADO2966 TetR family transcriptional regulator YP_002281739.1 TIGRFAM: methyltransferase; PFAM: O-methyltransferase domain protein; KEGG: bra:BRADO2967 conserved hypothetical protein; O-methyltransferase domain YP_002281740.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_002281741.1 KEGG: rec:RHECIAT_CH0002709 hypothetical protein YP_002281742.1 KEGG: mlo:mlr6657 hypothetical protein YP_002281743.1 PFAM: ubiquinone biosynthesis protein COQ7; KEGG: rec:RHECIAT_CH0002710 hypothetical protein YP_002281744.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rme:Rmet_5115 lysine exporter protein (LysE/YggA) YP_002281745.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002711 probable ABC transporter ATP-binding protein YP_002281746.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH02590 hypothetical protein YP_002281747.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rec:RHECIAT_CH0002713 3-demethylubiquinone-9 3-O-methyltransferase protein YP_002281748.1 KEGG: ret:RHE_CH02592 hypothetical protein YP_002281749.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002281750.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rec:RHECIAT_CH0002718 probable ornithine cyclodeaminase protein YP_002281751.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002719 probable acetyltransferase protein YP_002281752.1 KEGG: pol:Bpro_1646 hypothetical protein YP_002281753.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc00283 transcription regulator protein YP_002281754.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: ret:RHE_CH02599 probable pyridoxal-dependent amino acid decarboxylase protein YP_002281755.1 KEGG: ret:RHE_CH02601 hypothetical protein YP_002281756.1 PFAM: K potassium transporter; KEGG: rec:RHECIAT_CH0002728 potassium transporter YP_002281757.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: ret:RHE_CH02602 probable Na+/H+ antiporter protein YP_002281758.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: rec:RHECIAT_CH0002729 protocatechuate 3,4-dioxygenase protein, beta chain YP_002281759.1 KEGG: rec:RHECIAT_CH0002730 nodulation protein YP_002281760.1 SMART: hypothetical protein; carbohydrate-binding and sugar hydrolysis; KEGG: rec:RHECIAT_CH0002731 polysaccharidase protein YP_002281761.1 SMART: hypothetical protein; carbohydrate-binding and sugar hydrolysis; KEGG: ret:RHE_CH02606 polysaccharidase protein YP_002281762.1 PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0002736 membrane transporter YP_002281763.1 PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0002737 membrane transporter YP_002281764.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002738 ABC transporter ATP-binding protein YP_002281765.1 PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0002739 efflux transporter YP_002281766.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0002740 probable transcriptional regulator protein, AraC family YP_002281767.1 KEGG: ret:RHE_CH02612 hypothetical protein YP_002281768.1 KEGG: rec:RHECIAT_CH0002742 hypothetical conserved membrane protein YP_002281769.1 PFAM: cytochrome C oxidase subunit III; KEGG: rec:RHECIAT_CH0002743 cytochrome C oxidase protein, subunit III YP_002281770.1 PFAM: cytochrome C oxidase subunit III; KEGG: ret:RHE_CH02615 cytochrome-c oxidase subunit III protein YP_002281771.1 KEGG: rec:RHECIAT_CH0002745 cytochrome C oxidase protein, subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_002281772.1 PFAM: cytochrome C oxidase subunit II; KEGG: rec:RHECIAT_CH0002746 cytochrome C oxidase protein, subunit II YP_002281773.1 PFAM: cytochrome C class I; KEGG: ret:RHE_CH02618 probable cytochrome-c protein YP_002281774.1 PFAM: metal-dependent protein hydrolase; KEGG: ret:RHE_CH02619 metal-dependent hydrolase protein YP_002281775.1 KEGG: ret:RHE_CH00957 hypothetical protein YP_002281776.1 KEGG: rec:RHECIAT_CH0002749 hypothetical protein YP_002281777.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ent:Ent638_3207 ABC transporter YP_002281778.1 PFAM: transporter permease; KEGG: ret:RHE_PF00270 probable iron ABC transporter permease YP_002281779.1 PFAM: periplasmic binding protein; KEGG: bov:BOV_A0705 iron compound ABC transporter periplasmic iron compound-binding protein YP_002281780.1 PFAM: beta-lactamase; protein of unknown function DUF442; KEGG: ret:RHE_CH02621 metallo-beta-lactamase family protein YP_002281781.1 KEGG: ret:RHE_CH02624 calmodulin-binding protein YP_002281782.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphatase domain protein TPP-binding; thiamine pyrophosphatase; thiamine pyrophosphatase TPP binding domain protein; KEGG: ret:RHE_CH02790 acetolactate synthase 3 catalytic subunit YP_002281783.1 KEGG: atc:AGR_L_338 hypothetical protein YP_002281784.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: atc:AGR_L_339 hypothetical protein YP_002281785.1 PFAM: ATP-binding region ATPase domain protein; KEGG: atu:Atu4711 two component sensor kinase YP_002281786.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002281787.1 TIGRFAM: outer membrane adhesin like proteiin; KEGG: rec:RHECIAT_CH0002754 fusion protein: autoaggregation protein and hypothetical conserved protein YP_002281788.1 SMART: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0002756 transcriptional regulator protein YP_002281789.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: rec:RHECIAT_CH0002757 polysaccharide synthesis protein (nucleoside-diphosphate-sugar epimerase) YP_002281790.1 KEGG: ret:RHE_CH02629 hypothetical protein YP_002281791.1 KEGG: ret:RHE_CH02630 hypothetical protein YP_002281792.1 KEGG: rec:RHECIAT_CH0002760 hypothetical protein YP_002281793.1 KEGG: ret:RHE_CH02631 hypothetical protein YP_002281794.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: ret:RHE_CH02636 hypothetical protein YP_002281795.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH02637 hypothetical protein YP_002281796.1 PFAM: ThiJ/PfpI domain protein; KEGG: ret:RHE_CH02638 intracellular protease/amidase protein YP_002281797.1 PFAM: regulatory protein LacI; KEGG: rec:RHECIAT_CH0002767 transcriptional regulator protein, LacI family YP_002281798.1 PFAM: fatty acid hydroxylase; KEGG: ret:RHE_CH02640 probable desaturase protein YP_002281799.1 TIGRFAM: Rieske [2Fe-2S] domain protein, MocE subfamily; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sme:SMa2053 MocE-like protein YP_002281800.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ret:RHE_CH02643 ferredoxin reductase protein YP_002281801.1 PFAM: xylose isomerase; KEGG: rec:RHECIAT_CH0002772 hypothetical protein YP_002281802.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rec:RHECIAT_CH0002773 sensory box/GGDEF family protein YP_002281803.1 KEGG: rec:RHECIAT_CH0002774 hypothetical protein YP_002281804.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002775 probable menaquinone biosynthesis methyltransferase protein YP_002281805.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rec:RHECIAT_CH0002776 transcriptional regulator protein YP_002281806.1 KEGG: rec:RHECIAT_CH0002777 hypothetical protein YP_002281807.1 KEGG: ret:RHE_CH02650 hypothetical protein YP_002281808.1 KEGG: rec:RHECIAT_CH0002782 hypothetical protein YP_002281809.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0635 probable transcription regulator protein YP_002281810.1 PFAM: alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_1584 alcohol dehydrogenase, zinc-containing YP_002281812.1 KEGG: rec:RHECIAT_CH0002785 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; hypothetical protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002281814.1 KEGG: asa:ASA_1617 hypothetical protein YP_002281815.1 KEGG: rec:RHECIAT_CH0002754 fusion protein: autoaggregation protein and hypothetical conserved protein YP_002281816.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0001144 glutathione-dependent formaldehyde-activating protein YP_002281817.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: hne:HNE_3446 ISHne3, transposase YP_002281818.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002787 transcriptional regulator protein, LysR family YP_002281819.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002788 dehydrogenase protein YP_002281820.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0002789 transporter, MFS family YP_002281821.1 KEGG: ret:RHE_CH02654 hypothetical protein YP_002281822.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0002791 adenylate cyclase protein YP_002281823.1 KEGG: rec:RHECIAT_CH0002792 hypothetical protein YP_002281824.1 PFAM: glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; beta-galactosidase domain protein; KEGG: ret:RHE_CH02656 beta-D-galactosidase protein YP_002281825.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002794 probable sugar ABC transporter ATP-binding protein YP_002281826.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0002795 probable sugar ABC transporter permease YP_002281827.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02659 probable sugar ABC transporter permease YP_002281828.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0002797 probable sugar ABC transporter substrate-binding protein YP_002281829.1 PFAM: ROK family protein; regulatory protein ArsR; KEGG: rec:RHECIAT_CH0002798 probable transcriptional regulator protein, ROK family YP_002281830.1 PFAM: cupin; KEGG: ret:RHE_CH02663 hypothetical protein YP_002281833.1 KEGG: ret:RHE_CH02664 hypothetical protein YP_002281834.1 KEGG: rec:RHECIAT_CH0001178 hypothetical protein YP_002281835.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02665 transporter permease YP_002281836.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002801 transcriptional regulator protein, GntR family YP_002281837.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0002803 two-component response regulator protein YP_002281838.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE4 domain protein; KEGG: ret:RHE_CH02668 two-component sensor histidine kinase protein YP_002281839.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002805 acetyltransferase protein YP_002281840.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: hne:HNE_3446 ISHne3, transposase YP_002281841.1 KEGG: ret:RHE_CH02670 hypothetical protein YP_002281842.1 KEGG: ret:RHE_CH02671 hypothetical protein YP_002281843.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rec:RHECIAT_CH0002808 hypothetical protein YP_002281844.1 KEGG: rec:RHECIAT_CH0002809 hypothetical protein YP_002281845.1 PFAM: metallophosphoesterase; KEGG: sme:SMb21213 serinethreonine protein phosphatase YP_002281846.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: cpb:Cphamn1_1670 ADP-ribosylation/crystallin J1 YP_002281847.1 PFAM: inositol monophosphatase; KEGG: bcs:BCAN_A0847 hypothetical protein YP_002281848.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: eca:ECA2428 glycerophosphoryl diester phosphodiesterase YP_002281849.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: atc:AGR_L_3418 AlgS YP_002281850.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: psb:Psyr_4504 binding-protein-dependent transport systems inner membrane component YP_002281851.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003616 sn-glycerol-3-phosphate ABC transporter permease YP_002281852.1 PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3424 sn-glycerol-3-phosphate transporter substrate-binding protein YP_002281853.1 PFAM: ROK family protein; KEGG: atc:AGR_L_609 hypothetical protein YP_002281854.1 PFAM: monooxygenase; KEGG: rec:RHECIAT_CH0002812 probable alkanal monooxygenase (bacterial liciferase alpha chain) protein YP_002281855.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: ret:RHE_CH02597 probable transcriptional regulator protein, AraC family YP_002281856.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: rec:RHECIAT_CH0002722 dioxygenase protein YP_002281857.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002813 probable transcriptional regulator protein, LysR family YP_002281858.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02677 efflux transporter YP_002281859.1 PFAM: regulatory protein ArsR; KEGG: ret:RHE_CH02678 transcriptional regulator protein, ArsR family YP_002281860.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002821 probable adenylate cyclase protein YP_002281861.1 KEGG: rec:RHECIAT_CH0002822 hypothetical protein YP_002281862.1 KEGG: ret:RHE_CH02686 hypothetical protein YP_002281863.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002824 hypothetical protein YP_002281864.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002281865.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0002826 glyoxalase protein YP_002281866.1 PFAM: protein of unknown function DUF1194; KEGG: rec:RHECIAT_CH0002827 hypothetical protein YP_002281867.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH02691 probable transcriptional regulator protein, LysR family YP_002281868.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0002829 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002281869.1 PFAM: endoribonuclease L-PSP; KEGG: rec:RHECIAT_CH0002830 translation initiation inhibitor protein YP_002281870.1 KEGG: ret:RHE_CH02694 hypothetical protein YP_002281871.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: rec:RHECIAT_CH0002832 exported protein, TonB-dependent receptor YP_002281872.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: rec:RHECIAT_CH0002833 adenylate cyclase protein YP_002281873.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_CH02697 probable transcriptional regulator protein, TetR family YP_002281874.1 KEGG: ret:RHE_CH02698 hypothetical protein YP_002281875.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0002836 mRNA-binding protein YP_002281876.1 PFAM: DNA polymerase subunit beta; KEGG: rec:RHECIAT_CH0002837 nucleotidyltransferase protein YP_002281877.1 PFAM: fumarylacetoacetate hydrolase; KEGG: ret:RHE_CH02701 probable fumarylpyruvate hydrolase protein YP_002281878.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0002839 probable acetyltransferase protein YP_002281879.1 KEGG: ret:RHE_CH02704 hypothetical protein YP_002281880.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rec:RHECIAT_CH0002842 hypothetical protein YP_002281881.1 KEGG: rec:RHECIAT_CH0002843 hypothetical protein YP_002281882.1 KEGG: rec:RHECIAT_CH0002845 zinc uptake transcriptional regulator protein, Fur family YP_002281883.1 PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0002846 zinc uptake ABC transporter permease YP_002281884.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002847 zinc uptake ABC transporter ATP-binding protein YP_002281885.1 PFAM: periplasmic solute binding protein; KEGG: rec:RHECIAT_CH0002848 zinc uptake ABC transporter substrate-binding protein YP_002281886.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_CH0002849 probable cobalamin biosynthesis protein YP_002281887.1 KEGG: rec:RHECIAT_CH0002851 hypothetical protein YP_002281888.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0002853 glyoxalase/bleomycin resistance-like protein YP_002281889.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter; KEGG: rec:RHECIAT_CH0002854 probable hemolysin protein YP_002281890.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: rec:RHECIAT_CH0002855 chromate transporter YP_002281891.1 SMART: rhodanese; KEGG: ret:RHE_CH02717 superoxide dismutase SodM-like protein YP_002281892.1 KEGG: rec:RHECIAT_CH0002857 hypothetical protein YP_002281893.1 KEGG: ret:RHE_CH02718 hypothetical protein YP_002281894.1 KEGG: rec:RHECIAT_CH0002859 hypothetical protein YP_002281895.1 KEGG: rec:RHECIAT_CH0001160 hypothetical protein YP_002281897.1 TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: rec:RHECIAT_CH0001158 probable ATP-dependent DNA ligase protein YP_002281898.1 KEGG: ret:RHE_PF00494 hypothetical protein YP_002281899.1 KEGG: ret:RHE_PF00493 hypothetical protein YP_002281900.1 KEGG: btr:Btr_2025 hypothetical protein YP_002281901.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: nha:Nham_3682 transposase IS116/IS110/IS902 YP_002281902.1 KEGG: ape:APE_0790 hypothetical protein YP_002281903.1 KEGG: rec:RHECIAT_CH0001189 hypothetical protein YP_002281904.1 PFAM: glycoside hydrolase family 24; KEGG: rec:RHECIAT_CH0001188 phage-related lysozyme protein YP_002281905.1 KEGG: rec:RHECIAT_CH0001187 hypothetical protein YP_002281908.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: mja:MJ1064 galactoside acetyltransferase (LacA) YP_002281909.1 KEGG: rec:RHECIAT_CH0003085 hypothetical fusion protein YP_002281910.1 KEGG: mlo:mlr8028 hypothetical protein YP_002281911.1 KEGG: mlo:mlr8543 hypothetical protein YP_002281912.1 KEGG: mlo:mlr8540 hypothetical protein YP_002281913.1 KEGG: mlo:mlr8539 hypothetical protein YP_002281914.1 KEGG: mlo:mlr8538 hypothetical protein YP_002281915.1 KEGG: nwi:Nwi_1614 hypothetical protein YP_002281916.1 KEGG: nwi:Nwi_1627 hypothetical protein YP_002281917.1 KEGG: mlo:mlr8016 hypothetical protein YP_002281918.1 KEGG: xau:Xaut_3714 hypothetical protein YP_002281920.1 KEGG: dac:Daci_4089 hypothetical protein YP_002281921.1 KEGG: smd:Smed_1887 hypothetical protein YP_002281924.1 KEGG: smd:Smed_1888 hypothetical protein YP_002281925.1 KEGG: smd:Smed_1890 hypothetical protein YP_002281926.1 KEGG: dac:Daci_4094 hypothetical protein YP_002281927.1 KEGG: dac:Daci_4095 hypothetical protein YP_002281928.1 KEGG: dac:Daci_4096 hypothetical protein YP_002281929.1 KEGG: mes:Meso_1215 hypothetical protein YP_002281930.1 KEGG: bfs:BF3294 hypothetical protein YP_002281931.1 TIGRFAM: phage-associated protein, HI1409 family; PFAM: conserved hypothetical protein; KEGG: smd:Smed_1895 phage-associated protein, HI1409 family YP_002281932.1 TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264; KEGG: mlo:mlr8003 hypothetical protein YP_002281933.1 KEGG: mlo:mlr8001 hypothetical protein YP_002281935.1 KEGG: mrd:Mrad2831_5698 hypothetical protein YP_002281938.1 KEGG: smd:Smed_1904 hypothetical protein YP_002281940.1 KEGG: rru:Rru_A1656 hypothetical protein YP_002281941.1 PFAM: protein of unknown function DUF1376; KEGG: xau:Xaut_3701 hypothetical protein YP_002281942.1 PFAM: protein of unknown function DUF1064; KEGG: smd:Smed_1908 protein of unknown function DUF1064 YP_002281943.1 KEGG: smd:Smed_1909 hypothetical protein YP_002281944.1 PFAM: protein of unknown function DUF982; KEGG: sme:SMb20551 hypothetical protein YP_002281946.1 PFAM: DNA methylase N-4/N-6; KEGG: psb:Psyr_2825 DNA methylase N-4/N-6 YP_002281947.1 PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_CH0000995 hypothetical protein YP_002281948.1 KEGG: smd:Smed_1913 hypothetical protein YP_002281949.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: psb:Psyr_2828 C-5 cytosine-specific DNA methylase YP_002281950.1 KEGG: oan:Oant_0223 hypothetical protein YP_002281953.1 KEGG: rec:RHECIAT_CH0001134 hypothetical protein YP_002281955.1 KEGG: rec:RHECIAT_CH0003797 hypothetical protein YP_002281956.1 KEGG: btr:Btr_0970b hypothetical protein YP_002281957.1 PFAM: peptidase S24 and S26 domain protein; KEGG: xau:Xaut_3612 prophage repressor YP_002281958.1 PFAM: ATPase AAA; KEGG: tbd:Tbd_2681 predicted transcriptional regulator YP_002281961.1 KEGG: rec:RHECIAT_CH0001131 hypothetical protein YP_002281963.1 KEGG: rec:RHECIAT_CH0001130 hypothetical protein YP_002281964.1 PFAM: Gp157 family protein; KEGG: smd:Smed_1924 siphovirus GP157 family protein YP_002281965.1 TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: smd:Smed_1925 phage recombination protein Bet YP_002281966.1 KEGG: ppg:PputGB1_3432 hypothetical protein YP_002281967.1 KEGG: rsh:Rsph17029_3300 hypothetical protein YP_002281968.1 KEGG: swi:Swit_2215 hypothetical protein YP_002281969.1 KEGG: rsp:RSP_4227 hypothetical protein YP_002281973.1 KEGG: mlo:mll7975 hypothetical protein YP_002281974.1 PFAM: protein of unknown function DUF1643; KEGG: amr:AM1_0280 hypothetical protein YP_002281975.1 PFAM: integrase family protein; KEGG: rsp:RSP_3623 integrase YP_002281976.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ret:RHE_CH02720 phenazine antibiotic biosynthesis protein YP_002281977.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0002864 NTP pyrophosphohydrolase protein, MuT/NUDIX family YP_002281978.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0002865 endonuclease/exonuclease/phosphatase family protein YP_002281979.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0002866 iron(III) ABC transporter ATP-binding protein YP_002281980.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02724 iron(III) ABC transporter permease protein YP_002281981.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH02725 iron(III) ABC transporter substrate-binding protein YP_002281982.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH02726 hydrolase protein YP_002281983.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0002870 probable transcriptional regulator protein, MarR family YP_002281984.1 PFAM: aldo/keto reductase; KEGG: ret:RHE_CH02728 oxidoreductase protein YP_002281985.1 KEGG: ava:Ava_0831 hypothetical protein YP_002281986.1 PFAM: aminotransferase class I and II; KEGG: rec:RHECIAT_CH0002872 probable aminotransferase protein YP_002281987.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002281989.1 KEGG: ret:RHE_CH02731 hypothetical protein YP_002281990.1 PFAM: plasmid stabilization system; KEGG: ret:RHE_CH02732 hypothetical protein YP_002281991.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0002875 SAM-dependent methyltransferase protein YP_002281992.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002281993.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0002885 probable transcriptional regulator protein, TetR family YP_002281994.1 KEGG: rec:RHECIAT_CH0002886 hypothetical protein YP_002281995.1 TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0002887 L-ribulokinase protein YP_002281996.1 KEGG: rec:RHECIAT_CH0002895 hypothetical protein YP_002281997.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0002896 probable glycosyltransferase protein YP_002281998.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator; KEGG: ret:RHE_CH02757 probable transcriptional regulator protein, AraC family YP_002281999.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002898 alcohol dehydrogenase (NADP+) protein YP_002282000.1 PFAM: acyltransferase 3; KEGG: ret:RHE_PE00199 acetyltransferase protein YP_002282001.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor G domain IV; KEGG: rec:RHECIAT_CH0002899 probable tetracycline resistance protein YP_002282002.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0002900 NADH dehydrogenase protein YP_002282003.1 PFAM: BA14K family protein; KEGG: rec:RHECIAT_CH0002901 hypothetical protein YP_002282004.1 KEGG: rec:RHECIAT_CH0002902 hypothetical protein YP_002282005.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0002903 probable transcriptional regulator protein, AsnC family YP_002282006.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: rec:RHECIAT_CH0002904 probable aspartate racemase protein YP_002282007.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: rec:RHECIAT_CH0002905 transcriptional regulator protein YP_002282008.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0002906 probable transcriptional regulator protein, TetR family YP_002282009.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02766 antibiotic resistance permease YP_002282010.1 PFAM: helix-turn-helix HxlR type; KEGG: ret:RHE_CH02767 transcriptional regulator protein YP_002282011.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: ret:RHE_CH02768 hypothetical protein YP_002282012.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002282013.1 PFAM: regulatory protein MerR; regulatory protein LuxR; transcription regulator MerR DNA binding; KEGG: rec:RHECIAT_CH0002912 probable transcriptional regulator protein YP_002282014.1 KEGG: rec:RHECIAT_CH0002913 exodeoxyribonuclease V protein, subunit alpha YP_002282015.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0002914 probable transcriptional regulator protein, LysR family YP_002282016.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: rec:RHECIAT_CH0002915 carboxymuconolactone decarboxylase protein YP_002282017.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: ret:RHE_CH02774 hypothetical protein YP_002282018.1 PFAM: cupin; KEGG: ret:RHE_CH02775 hypothetical protein YP_002282019.1 PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: ret:RHE_CH02776 mechanosensitive ion channel protein YP_002282020.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ret:RHE_CH02777 transcriptional regulator protein YP_002282021.1 PFAM: Secreted repeat of unknown function; KEGG: ret:RHE_CH02778 hypothetical protein YP_002282022.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ret:RHE_CH02779 RNA polymerase sigma factor protein (sigma-24) YP_002282023.1 KEGG: ret:RHE_CH02780 hypothetical conserved membrane protein YP_002282024.1 KEGG: rec:RHECIAT_CH0002922 hypothetical protein YP_002282025.1 PFAM: nitrile hydratase subunit beta; KEGG: rec:RHECIAT_CH0002923 nitrile hydratase protein subunit beta YP_002282026.1 KEGG: rec:RHECIAT_CH0002924 nitrile hydratase protein, subunit alpha; TIGRFAM: nitrile hydratase, subunit alpha; PFAM: nitrile hydratase alpha chain YP_002282027.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rec:RHECIAT_CH0002925 oxidoreductase protein YP_002282028.1 KEGG: rec:RHECIAT_CH0002926 hypothetical conserved membrane protein YP_002282029.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0002927 probable amino acid efflux protein, LysE family YP_002282030.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002928 aldo-keto reductase family protein YP_002282031.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002282032.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphatase domain protein TPP-binding; thiamine pyrophosphatase; thiamine pyrophosphatase TPP binding domain protein; KEGG: ret:RHE_CH02790 acetolactate synthase 3 catalytic subunit YP_002282033.1 PFAM: protein of unknown function DUF87; KEGG: ret:RHE_CH02791 hypothetical protein YP_002282034.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_CH0002933 dihydrodipicolinate synthase protein YP_002282035.1 KEGG: mlo:mlr0530 hypothetical protein YP_002282036.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002282037.1 KEGG: rec:RHECIAT_CH0002937 phosphoserine phosphatase protein; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_002282038.1 KEGG: rec:RHECIAT_CH0002938 serine protease Do protein; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_002282039.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rec:RHECIAT_CH0002939 hydrolase serine protease transmembrane subunit C protein YP_002282040.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: ret:RHE_CH02797 hydrolase serine protease transmembrane subunit K protein YP_002282041.1 PFAM: dihydrofolate reductase region; KEGG: rec:RHECIAT_CH0002941 dihydrofolate reductase protein YP_002282042.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002282043.1 PFAM: protein of unknown function DUF1321; KEGG: rec:RHECIAT_CH0002944 hypothetical protein YP_002282044.1 KEGG: ret:RHE_CH02801 hypothetical protein YP_002282045.1 KEGG: ret:RHE_CH02802 hypothetical protein YP_002282046.1 KEGG: rec:RHECIAT_CH0002947 hypothetical protein YP_002282047.1 PFAM: FAD linked oxidase; KEGG: rec:RHECIAT_CH0002948 D-lactate dehydrogenase protein YP_002282048.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0002949 oxidoreductase protein YP_002282049.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH02806 probable transcriptional regulator protein, LysR family YP_002282050.1 TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase; KEGG: rec:RHECIAT_CH0002951 ammonia monooxygenase protein YP_002282051.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rec:RHECIAT_CH0002955 probable transcriptional regulator protein, AraC family YP_002282052.1 KEGG: rec:RHECIAT_CH0002956 hypothetical protein YP_002282053.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: ret:RHE_CH02810 outer membrane lipoprotein YP_002282054.1 PFAM: flagellin domain protein; KEGG: rec:RHECIAT_CH0002958 flagellin C protein YP_002282055.1 PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH02812 probable acriflavin resistance (multidrug efflux transporter) protein YP_002282056.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ret:RHE_CH02813 probable protein secretion protein, HlyD family YP_002282057.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0002961 adenylate cyclase protein YP_002282058.1 PFAM: SpoVR family protein; KEGG: rec:RHECIAT_CH0002964 sporulation like protein, SpoVR family YP_002282059.1 PFAM: protein of unknown function DUF444; KEGG: rec:RHECIAT_CH0002965 hypothetical protein YP_002282060.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: rec:RHECIAT_CH0002966 serine protein kinase protein YP_002282061.1 PFAM: UvrD/REP helicase; KEGG: rec:RHECIAT_CH0002969 ATP-dependent DNA helicase II protein YP_002282062.1 KEGG: ret:RHE_CH02820 hypothetical protein YP_002282063.1 KEGG: psb:Psyr_2030 calcium-binding EF-hand YP_002282064.1 PFAM: isochorismatase hydrolase; KEGG: ret:RHE_CH02821 pyrazinamidase/nicotinamidase protein YP_002282065.1 KEGG: ret:RHE_CH02823 hypothetical protein YP_002282066.1 KEGG: ret:RHE_CH02824 hypothetical protein YP_002282067.1 PFAM: AzlC family protein; KEGG: rec:RHECIAT_CH0002975 branched-chain amino acid permease (azaleucine resistance) protein YP_002282068.1 PFAM: branched-chain amino acid transport; KEGG: rec:RHECIAT_CH0002976 hypothetical conserved membrane protein YP_002282069.1 PFAM: creatinase; peptidase M24; KEGG: ret:RHE_CH02827 probable aminopeptidase P protein YP_002282070.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002282071.1 PFAM: electron transporter SCO1/SenC; KEGG: rec:RHECIAT_CH0002979 cytochrome C oxidase assembly factor protein YP_002282072.1 PFAM: CheW domain protein; KEGG: rec:RHECIAT_CH0002981 chemotaxis signal transduction protein YP_002282073.1 PFAM: CreA family protein; KEGG: rec:RHECIAT_CH0002982 hypothetical conserved protein, CreA family YP_002282074.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: ret:RHE_CH02833 probable DNA polymerase III epsilon subunit protein YP_002282075.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0002984 probable acetyltransferase protein YP_002282076.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002282077.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_3303 GCN5-related N-acetyltransferase YP_002282078.1 PFAM: protein of unknown function DUF1778; KEGG: rpe:RPE_1403 hypothetical protein YP_002282079.1 KEGG: ret:RHE_CH02836 hypothetical protein YP_002282080.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rec:RHECIAT_CH0002987 DNA repair protein YP_002282081.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: ret:RHE_CH02838 hypothetical protein YP_002282082.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002282083.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002282084.1 PFAM: cell division protein FtsA; KEGG: rec:RHECIAT_CH0002992 cell division protein YP_002282085.1 PFAM: cell division protein FtsQ; polypeptide-transporter domain protein FtsQ-type; KEGG: ret:RHE_CH02842 cell division protein YP_002282086.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002282087.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_002282088.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ret:RHE_CH02844 UDP-glucose 4-epimerase protein YP_002282089.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002282090.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002282091.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002282092.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: rec:RHECIAT_CH0002999 cell division protein YP_002282093.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002282094.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002282095.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ret:RHE_CH02851 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein YP_002282096.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002282097.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rec:RHECIAT_CH0003004 cell division penicillin-binding protein YP_002282098.1 KEGG: rec:RHECIAT_CH0003005 hypothetical protein YP_002282099.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rec:RHECIAT_CH0003006 S-adenosyl-methyltransferase protein YP_002282100.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002282101.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0003008 probable sarcosine oxidase protein YP_002282102.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0003009 probable sarcosine oxidase protein YP_002282103.1 PFAM: lytic transglycosylase catalytic; KEGG: ret:RHE_CH02859 probable transglycosylase protein YP_002282104.1 PFAM: peptidoglycan-binding protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: ret:RHE_CH02860 probable N-acetylmuramoyl-L-alanine amidase protein YP_002282105.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_CH0003012 molecular chaperone protein, DnaJ family YP_002282106.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_002282107.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0003015 probable amino acid efflux protein, LysE family YP_002282108.1 PFAM: lytic transglycosylase catalytic; KEGG: ret:RHE_CH02864 probable transglycosylase protein YP_002282109.1 PFAM: beta-lactamase; KEGG: rec:RHECIAT_CH0003017 6-aminohexanoate-dimer hydrolase protein YP_002282110.1 KEGG: rec:RHECIAT_CH0003018 S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase protein YP_002282111.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0003019 S-adenosylmethionine:diacylgycerolhomoserine-N- methyltransferase protein YP_002282112.1 PFAM: glycoside hydrolase family 25; KEGG: ret:RHE_CH02868 glycoside hydrolase protein YP_002282113.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding protein; KEGG: rec:RHECIAT_CH0003021 probable membrane-bound lytic murein transglycosylase protein YP_002282114.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02870 permease YP_002282115.1 KEGG: rec:RHECIAT_CH0003023 5,10-methylenetetrahydrofolate reductase protein; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_002282116.1 PFAM: regulatory protein ArsR; methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0003024 probable methyltransferase transcriptional regulator protein, ArsR family YP_002282117.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002282118.1 PFAM: ribonuclease T2; KEGG: ret:RHE_CH02874 probable enterobacter ribonuclease protein YP_002282119.1 PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0003027 lysophospholipase protein YP_002282120.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003028 transporter permease protein YP_002282121.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rec:RHECIAT_CH0003029 acyl-CoA transferase/L-carnitine dehydrogenase protein YP_002282122.1 PFAM: thiamine pyrophosphatase domain protein TPP-binding; thiamine pyrophosphatase; thiamine pyrophosphatase TPP binding domain protein; KEGG: ret:RHE_CH02878 acetolactate synthase 2 catalytic subunit YP_002282123.1 PFAM: endoribonuclease L-PSP; KEGG: rec:RHECIAT_CH0003031 translation initiation inhibitor protein YP_002282124.1 PFAM: protein of unknown function DUF442; KEGG: rec:RHECIAT_CH0003032 hypothetical protein YP_002282125.1 KEGG: rec:RHECIAT_CH0003033 hypothetical protein YP_002282126.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH02882 hypothetical protein YP_002282127.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_CH02883 chromosome partitioning protein A YP_002282128.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ret:RHE_CH02884 probable alcohol dehydrogenase protein YP_002282129.1 PFAM: aldehyde dehydrogenase; KEGG: ret:RHE_CH02885 probable aldehyde dehydrogenase protein YP_002282130.1 PFAM: glutamine synthetase; KEGG: rec:RHECIAT_CH0003038 glutamine synthetase protein YP_002282131.1 PFAM: amino acid permease-associated region; KEGG: rec:RHECIAT_CH0003039 amino acid permease YP_002282132.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ret:RHE_CH02888 N-formylglutamate amidohydrolase protein YP_002282133.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ret:RHE_CH02889 probable transcriptional regulator protein, RpiR family YP_002282134.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003042 probable ABC transporter substrate-binding protein YP_002282135.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003043 probable ABC transporter permease YP_002282136.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003044 probable ABC transporter permease YP_002282137.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003045 probable ABC transporter ATP-binding protein YP_002282138.1 PFAM: proline racemase; KEGG: pde:Pden_1184 proline racemase YP_002282139.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: ret:RHE_CH02894 probable sugar ABC transporter ATP-binding protein YP_002282140.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0003047 probable oxidoreductase protein YP_002282141.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003048 probable sugar ABC transporter permease YP_002282142.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003049 probable sugar ABC transporter permease YP_002282143.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH02898 probable sugar ABC transporter substrate-binding protein YP_002282144.1 PFAM: ATPase BadF/BadG/BcrA/BcrD; KEGG: rec:RHECIAT_CH0003052 N-acetylglucosamine kinase protein YP_002282145.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rec:RHECIAT_CH0003053 probable transcriptional regulator protein YP_002282146.1 TIGRFAM: prevent-host-death family protein; KEGG: rpe:RPE_3949 prevent-host-death family protein YP_002282147.1 KEGG: rpe:RPE_3948 hypothetical protein YP_002282148.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_002282149.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: rec:RHECIAT_CH0003057 N-acylglucosamine 2-epimerase protein YP_002282150.1 PFAM: protein of unknown function DUF336; KEGG: ret:RHE_CH02903 hypothetical protein YP_002282151.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_CH0003059 flavin reductase protein YP_002282152.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: rec:RHECIAT_CH0003060 probable hydantoin racemase protein YP_002282153.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003061 probable spermidine/putrescine ABC transporter permease YP_002282154.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003062 probable spermidine/putrescine ABC transporter permease YP_002282155.1 KEGG: ret:RHE_CH02908 probable spermidine/putrescine ABC transporter substrate-binding protein YP_002282156.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003064 probable spermidine/putrescine ABC transporter ATP-binding protein YP_002282157.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_CH0003065 probable transcriptional regulator protein, GntR family YP_002282158.1 KEGG: rec:RHECIAT_CH0000809 hypothetical protein YP_002282159.1 KEGG: ret:RHE_CH02912 hypothetical protein YP_002282160.1 KEGG: rec:RHECIAT_CH0003068 hypothetical protein YP_002282161.1 KEGG: rec:RHECIAT_CH0003069 hypothetical protein YP_002282162.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: bcs:BCAN_B1059 excinuclease YP_002282164.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: ret:RHE_CH02915 autoinducer transcriptional regulator protein YP_002282165.1 PFAM: autoinducer synthesis protein; KEGG: rec:RHECIAT_CH0003073 autoinducer synthesis protein YP_002282166.1 KEGG: rec:RHECIAT_CH0003074 hypothetical protein YP_002282167.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0003075 probable two-component response regulator protein YP_002282168.1 KEGG: bac:BamMC406_6706 hypothetical protein YP_002282170.1 TIGRFAM: methyltransferase FkbM family; KEGG: rsh:Rsph17029_3697 methyltransferase FkbM family YP_002282171.1 KEGG: rec:RHECIAT_CH0001888 hypothetical protein YP_002282173.1 KEGG: rec:RHECIAT_CH0003100 hypothetical protein YP_002282174.1 PFAM: protein of unknown function DUF541; KEGG: ret:RHE_CH02935 hypothetical conserved membrane protein YP_002282175.1 KEGG: rec:RHECIAT_CH0003102 hypothetical protein YP_002282176.1 KEGG: ret:RHE_CH02937 hypothetical protein YP_002282177.1 PFAM: protein of unknown function UPF0047; KEGG: ret:RHE_CH02938 hypothetical protein YP_002282178.1 PFAM: protein of unknown function DUF1428; KEGG: sme:SMc01560 hypothetical protein YP_002282179.1 KEGG: bcs:BCAN_A0647 hypothetical protein YP_002282180.1 PFAM: protein of unknown function DUF937; KEGG: mrd:Mrad2831_2271 protein of unknown function DUF937 YP_002282181.1 PFAM: protein of unknown function DUF922; KEGG: ret:RHE_CH02939 hypothetical protein YP_002282182.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: azc:AZC_3713 transmembrane protein YP_002282183.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: ret:RHE_CH02940 probable transcriptional regulator protein, Fnr/CRP family YP_002282184.1 KEGG: ret:RHE_CH02941 hypothetical protein YP_002282186.1 PFAM: protein of unknown function DUF427; KEGG: rec:RHECIAT_CH0003107 hypothetical protein YP_002282187.1 PFAM: B3/4 domain protein; KEGG: rec:RHECIAT_CH0003108 hypothetical protein YP_002282188.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH02945 permease YP_002282189.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rec:RHECIAT_CH0003110 probable transcriptional regulator protein, AraC family YP_002282190.1 PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_CH02947 aminoglycoside 3'-phosphotransferase protein YP_002282191.1 KEGG: rec:RHECIAT_CH0003112 hypothetical protein YP_002282192.1 PFAM: protein of unknown function DUF930; KEGG: rec:RHECIAT_CH0003113 hypothetical protein YP_002282193.1 PFAM: protein of unknown function DUF930; KEGG: mlo:mlr0330 hypothetical protein YP_002282194.1 PFAM: GYD family protein; KEGG: rec:RHECIAT_CH0003114 hypothetical protein YP_002282195.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_002282196.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0003116 hypothetical protein YP_002282197.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_002282198.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_002282199.1 KEGG: ret:RHE_CH02953 ATP-dependent DNA helicase protein; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase; HRDC domain protein; DEAD/DEAH box helicase; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_002282200.1 synthesizes RNA primers at the replication forks YP_002282201.1 KEGG: ret:RHE_CH02955 hypothetical protein YP_002282202.1 KEGG: rec:RHECIAT_CH0003123 hypothetical protein YP_002282203.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002282204.1 KEGG: rec:RHECIAT_CH0003127 hypothetical protein YP_002282205.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rec:RHECIAT_CH0003128 probable multidrug efflux protein YP_002282206.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02963 probable transporter permease YP_002282207.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0003130 oxidoreductase protein YP_002282208.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: ret:RHE_CH02964 probable zinc protease protein YP_002282209.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002282210.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; KEGG: rec:RHECIAT_CH0003134 uracil DNA glycosylase protein YP_002282211.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rec:RHECIAT_CH0003135 hypothetical protein YP_002282212.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002282213.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0003137 lipopolysaccharide core biosynthesis mannosyltransferase protein YP_002282214.1 involved in the transport of C4-dicarboxylates across the membrane YP_002282215.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH02972 two-component sensor histidine kinase protein regulating C4-dicarboxylate transporter YP_002282216.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: ret:RHE_CH02973 two-component response regulator protein regulating C4-dicarboxylate transporter YP_002282217.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH02974 leucine-responsive transcriptional regulator protein, AsnC family YP_002282218.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0003142 thioredoxin reductase (NADPH) protein YP_002282219.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0003143 probable transcriptional regulator protein, LysR family YP_002282220.1 SMART: regulatory protein ArsR; KEGG: ret:RHE_CH02977 probable transcriptional regulator protein, ArsR family YP_002282221.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_1336 major facilitator family transporter YP_002282222.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rec:RHECIAT_CH0003145 glycerol trinitrate reductase protein YP_002282223.1 PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: ret:RHE_CH02980 probable antibiotic resistance (streptomycin kinase) protein YP_002282224.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: ret:RHE_CH02989 hypothetical protein YP_002282225.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0003148 probable transcriptional regulator protein, LysR family YP_002282226.1 PFAM: protein of unknown function UPF0157; KEGG: rec:RHECIAT_CH0003149 hypothetical protein YP_002282227.1 KEGG: rec:RHECIAT_CH0003150 hypothetical protein YP_002282228.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rec:RHECIAT_CH0003151 LPS-associated cation exporter (Ca2+/H+ antiporter) protein YP_002282229.1 KEGG: rec:RHECIAT_CH0003152 3-deoxy-manno-octulosonate cytidylyltransferase protein YP_002282230.1 PFAM: glycosyl transferase family 8; KEGG: ret:RHE_CH02996 galactosyltransferase protein YP_002282231.1 PFAM: PilT protein domain protein; KEGG: ret:RHE_CH02997 hypothetical protein YP_002282232.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: jan:Jann_1433 prevent-host-death protein YP_002282233.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002282234.1 PFAM: glycosyl transferase family 39; KEGG: rec:RHECIAT_CH0003155 glycosyltransferase protein YP_002282235.1 PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: ret:RHE_CH03000 hypothetical protein YP_002282236.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: ret:RHE_CH03001 hypothetical protein YP_002282237.1 PFAM: glucose sorbosone dehydrogenase; KEGG: ret:RHE_CH03002 glucose dehydrogenase B protein YP_002282238.1 KEGG: rec:RHECIAT_CH0003159 hypothetical protein YP_002282239.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003160 transporter YP_002282240.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rec:RHECIAT_CH0003162 cold shock protein YP_002282241.1 KEGG: rec:RHECIAT_CH0003163 hypothetical protein YP_002282242.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0003164 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002282243.1 PFAM: helix-turn-helix HxlR type; transcriptional regulator PadR family protein; KEGG: ret:RHE_CH03008 transcriptional regulator protein YP_002282244.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH03009 probable two-component sensor histidine kinase protein YP_002282245.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_CH0003167 probable two-component response regulator protein YP_002282246.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0003168 probable transcriptional regulator protein, MarR family YP_002282247.1 KEGG: rec:RHECIAT_CH0003169 hypothetical protein YP_002282248.1 PFAM: protein of unknown function DUF1236; SH3 type 3 domain protein; KEGG: ret:RHE_CH03012 hypothetical protein YP_002282249.1 PFAM: beta-lactamase; KEGG: ret:RHE_CH03013 hydrolase protein YP_002282250.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: rec:RHECIAT_CH0003172 chaperone methionine--tRNA ligase protein YP_002282251.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002282252.1 PFAM: protein of unknown function DUF1790; KEGG: rec:RHECIAT_CH0003174 hypothetical protein YP_002282253.1 PFAM: protein of unknown function DUF526; KEGG: ret:RHE_CH03017 hypothetical protein YP_002282254.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002282255.1 PFAM: protein of unknown function DUF185; KEGG: rec:RHECIAT_CH0003177 hypothetical protein YP_002282256.1 PFAM: protein of unknown function DUF152; KEGG: rec:RHECIAT_CH0003178 hypothetical protein YP_002282257.1 PFAM: creatinase; peptidase M24; KEGG: rec:RHECIAT_CH0003179 probable Xaa-Pro dipeptidase protein YP_002282258.1 KEGG: ret:RHE_CH03022 hypothetical protein YP_002282259.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002282260.1 KEGG: ret:RHE_CH03024 hypothetical protein YP_002282261.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002282262.1 KEGG: ret:RHE_CH03026 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002282263.1 SMART: extracellular solute-binding protein family 3; KEGG: ret:RHE_CH03027 amino acid ABC transporter substrate-binding protein YP_002282264.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002282265.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003188 acetyltransferase protein YP_002282266.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_002282267.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002282268.1 KEGG: rec:RHECIAT_CH0003191 hypothetical protein YP_002282269.1 PFAM: MaoC domain protein dehydratase; KEGG: rec:RHECIAT_CH0003192 probable enoyl-CoA hydratase protein YP_002282270.1 PFAM: MaoC domain protein dehydratase; KEGG: rec:RHECIAT_CH0003193 enoyl-CoA hydratase protein YP_002282271.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002282272.1 PFAM: cytochrome C1; KEGG: ret:RHE_CH03036 ubiquinol--cytochrome C reductase, cytochrome C1 subunit protein YP_002282273.1 PFAM: cytochrome b/b6 domain; KEGG: rec:RHECIAT_CH0003196 ubiquinol-cytochrome C reductase protein, cytochrome b subunit YP_002282274.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rec:RHECIAT_CH0003197 ubiquinol-cytochrome C reductase protein, iron-sulfur subunit YP_002282275.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_CH03039 endonuclease/exonuclease/phosphatase family protein YP_002282276.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03040 probable ABC transporter ATP-binding protein YP_002282277.1 KEGG: rec:RHECIAT_CH0003200 hypothetical protein YP_002282278.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003201 probable ABC transporter ATP-binding protein YP_002282279.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rec:RHECIAT_CH0003203 tRNA/rRNA aminotransferase/methyltransferase protein YP_002282280.1 TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; PFAM: Na+/Picotransporter; KEGG: ret:RHE_CH03044 probable sodium-dependent phosphate transporter YP_002282281.1 KEGG: ret:RHE_CH03045 hypothetical protein YP_002282282.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_002282283.1 KEGG: rec:RHECIAT_CH0003207 hypothetical protein YP_002282284.1 KEGG: rec:RHECIAT_CH0003208 hypothetical protein YP_002282285.1 PFAM: polynucleotide adenylyltransferase region; KEGG: rec:RHECIAT_CH0003209 poly(A) polymerase protein YP_002282286.1 PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH03050 probable NTP pyrophosphohydrolase protein, MutT/NUDIX family YP_002282287.1 PFAM: protein of unknown function DUF1285; KEGG: rec:RHECIAT_CH0003211 hypothetical protein YP_002282288.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: rec:RHECIAT_CH0003212 methanol dehydrogenase regulator MoxR-like protein YP_002282289.1 KEGG: rec:RHECIAT_CH0003213 hypothetical protein YP_002282290.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: rec:RHECIAT_CH0003214 hypothetical protein YP_002282291.1 KEGG: rec:RHECIAT_CH0003215 hypothetical protein YP_002282292.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003216 acetyltransferase protein YP_002282293.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH03060 probable acetyltransferase protein YP_002282294.1 KEGG: ret:RHE_CH03061 glutathione S-transferase protein YP_002282295.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0003219 hydrolase protein, MutT/NUDIX family YP_002282296.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003220 phosphoesterase protein YP_002282297.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0003221 hypothetical protein YP_002282298.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_CH0003222 RNA polymerase sigma factor protein (sigma-24) YP_002282299.1 KEGG: rec:RHECIAT_CH0003223 hypothetical protein YP_002282300.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: rec:RHECIAT_CH0003224 2-isopropylmalate synthase protein YP_002282301.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter; KEGG: rec:RHECIAT_CH0003225 benzoate transporter YP_002282302.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002282303.1 KEGG: ret:RHE_CH03070 hypothetical protein YP_002282304.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002282305.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rec:RHECIAT_CH0003230 probable cation efflux protein YP_002282306.1 KEGG: rec:RHECIAT_CH0003231 hypothetical protein YP_002282307.1 KEGG: rec:RHECIAT_CH0003232 hypothetical protein YP_002282308.1 trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II YP_002282309.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rec:RHECIAT_CH0003234 probable outer membrane iron receptor protein YP_002282310.1 PFAM: extensin; KEGG: rec:RHECIAT_CH0003235 hypothetical protein YP_002282311.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002282312.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003237 hypothetical protein YP_002282313.1 KEGG: ret:RHE_CH03079 hypothetical protein YP_002282314.1 PFAM: regulatory protein LuxR; KEGG: rec:RHECIAT_CH0003239 probable transcriptional regulator protein, LuxR family YP_002282315.1 PFAM: hypothetical protein; KEGG: ret:RHE_CH03081 hypothetical protein YP_002282316.1 KEGG: rec:RHECIAT_CH0003240 hypothetical protein YP_002282317.1 KEGG: ret:RHE_CH03083 hypothetical protein YP_002282318.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002282319.1 TIGRFAM: choline ABC transporter periplasmic binding protein; PFAM: substrate-binding region of ABC-type glycine betaine transport system; KEGG: rec:RHECIAT_CH0003243 proline/glycine betaine ABC transporter substrate-binding protein YP_002282320.1 TIGRFAM: choline ABC transporter permease; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03086 proline/glycine betaine ABC transporter permease YP_002282321.1 KEGG: rec:RHECIAT_CH0003245 proline/glycine betaine ABC transporter ATP-binding protein; TIGRFAM: choline ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_002282322.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rec:RHECIAT_CH0003246 hypothetical protein YP_002282323.1 PFAM: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0003247 transcriptional regulator protein (repressor of nodulation genes), ArsR family YP_002282324.1 catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor YP_002282325.1 KEGG: rec:RHECIAT_CH0003249 phosphohydrolase protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002282326.1 PFAM: extracellular ligand-binding receptor; KEGG: rec:RHECIAT_CH0003251 amino acid ABC transporter substrate-binding protein YP_002282327.1 KEGG: rec:RHECIAT_CH0003252 adenine deaminase protein; TIGRFAM: adenine deaminase; PFAM: amidohydrolase YP_002282328.1 KEGG: rec:RHECIAT_CH0003253 hypothetical protein YP_002282329.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rec:RHECIAT_CH0003254 probable alpha-glucosidase protein YP_002282330.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0003255 oligopeptide ABC transporter substrate-binding protein YP_002282331.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003256 oligopeptide ABC transporter permease YP_002282332.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003257 oligopeptide ABC transporter permease YP_002282333.1 KEGG: rec:RHECIAT_CH0003258 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_002282334.1 KEGG: rec:RHECIAT_CH0003259 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA YP_002282335.1 KEGG: rec:RHECIAT_CH0003260 hypothetical protein YP_002282336.1 PFAM: PfkB domain protein; KEGG: rec:RHECIAT_CH0003261 2-dehydro-3-deoxygluconokinase protein YP_002282337.1 KEGG: ret:RHE_CH03103 glutamine synthetase translation inhibitor protein YP_002282338.1 PFAM: glutamine synthetase; glutamine synthetase beta-Grasp; KEGG: ret:RHE_CH03104 glutamine synthetase II protein YP_002282339.1 PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH03105 probable glycosyltransferase protein YP_002282340.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: ret:RHE_CH03106 lipase protein YP_002282341.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0003267 probable transcriptional regulator protein, MarR family YP_002282342.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002282343.1 KEGG: rec:RHECIAT_CH0003269 hypothetical protein YP_002282344.1 PFAM: NnrU family protein; KEGG: rec:RHECIAT_CH0003270 nitrate reductase protein YP_002282345.1 KEGG: ret:RHE_CH03111 hypothetical protein YP_002282346.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope YP_002282347.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0003273 permease protein YP_002282348.1 PFAM: transcriptional regulator PadR family protein; KEGG: ret:RHE_CH03114 transcriptional regulator protein, PadR family YP_002282349.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_002282350.1 PFAM: monooxygenase; KEGG: ret:RHE_CH03117 probable oxidoreductase protein YP_002282351.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: sme:SMc00344 hypothetical protein YP_002282352.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0003278 hypothetical protein YP_002282353.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_CH0003279 probable RNA polymerase sigma factor protein (sigma-70) YP_002282354.1 PFAM: DGPFAETKE family protein; KEGG: rec:RHECIAT_CH0003280 hypothetical protein YP_002282355.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0003281 glycerol kinase protein YP_002282356.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0003282 D-beta-hydroxybutyrate dehydrogenase protein YP_002282357.1 TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: ret:RHE_CH03124 xanthine dehydrogenase protein YP_002282358.1 KEGG: rec:RHECIAT_CH0003284 xanthine dehydrogenase protein subunit beta; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_002282359.1 TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: ret:RHE_CH03126 xanthine dehydrogenase protein YP_002282360.1 KEGG: rec:RHECIAT_CH0003286 hypothetical protein YP_002282361.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0003287 probable transcriptional regulator protein, LysR family YP_002282362.1 KEGG: rec:RHECIAT_CH0003288 hypothetical protein YP_002282363.1 KEGG: rec:RHECIAT_CH0003289 hypothetical conserved fusion protein YP_002282364.1 PFAM: protein of unknown function DUF989; KEGG: rec:RHECIAT_CH0003290 hypothetical protein YP_002282365.1 Catalyzes the deamination of guanine YP_002282366.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rpc:RPC_2215 transcriptional regulators, CopG/Arc/MetJ DNA-binding domain YP_002282368.1 KEGG: bra:BRADO1356 hypothetical protein YP_002282369.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: rec:RHECIAT_CH0003294 L-lactate dehydrogenase (cytochrome) protein YP_002282370.1 KEGG: rec:RHECIAT_CH0003352 hypothetical protein YP_002282371.1 KEGG: ret:RHE_CH03133 phosphatase protein YP_002282372.1 PFAM: alpha/beta hydrolase fold; methyltransferase type 12; KEGG: ret:RHE_CH03134 hydrolase protein YP_002282373.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rec:RHECIAT_CH0003355 probable CDP-alcohol phosphatidyltransferase protein YP_002282374.1 PFAM: PspA/IM30 family protein; KEGG: rec:RHECIAT_CH0003356 phage-related protein YP_002282375.1 PFAM: protein of unknown function DUF1449; KEGG: ret:RHE_CH03137 hypothetical protein YP_002282376.1 PFAM: band 7 protein; KEGG: ret:RHE_CH03138 hypothetical protein YP_002282377.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003359 DNA repair protein YP_002282378.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: transthyretin; KEGG: rec:RHECIAT_CH0003360 transthyretin-like protein YP_002282379.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_002282380.1 KEGG: rec:RHECIAT_CH0003362 hypothetical protein YP_002282381.1 TIGRFAM: OHCU decarboxylase; KEGG: rec:RHECIAT_CH0003363 hypothetical protein YP_002282382.1 KEGG: ret:RHE_CH03142 chitooligosaccharide deacetylase protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase YP_002282383.1 PFAM: protein of unknown function DUF1045; KEGG: ret:RHE_CH03143 hypothetical protein YP_002282384.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0003366 probable D-amino acid oxidase protein YP_002282385.1 PFAM: protein of unknown function DUF752; KEGG: rec:RHECIAT_CH0003367 hypothetical protein YP_002282386.1 KEGG: ret:RHE_CH03146 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002282387.1 KEGG: rec:RHECIAT_CH0003370 hypothetical protein YP_002282388.1 KEGG: rec:RHECIAT_CH0001149 hypothetical protein YP_002282389.1 PFAM: HEAT domain containing protein; KEGG: rec:RHECIAT_CH0003374 DNA alkylation repair protein YP_002282390.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rec:RHECIAT_CH0003375 ATP-dependent RNA helicase protein YP_002282391.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH03153 probable transcriptional regulator protein, AraC family YP_002282392.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH03154 probable transporter permease YP_002282393.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH03155 hypothetical conserved membrane protein YP_002282394.1 PFAM: transposase IS4 family protein; KEGG: ret:RHE_PA00071 probable insertion sequence transposase protein, IS4 family YP_002282395.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rec:RHECIAT_CH0003377 hypothetical protein YP_002282396.1 PFAM: protein of unknown function DUF403; KEGG: rec:RHECIAT_CH0003378 hypothetical protein YP_002282397.1 PFAM: transglutaminase; transglutaminase domain protein; KEGG: ret:RHE_CH03158 transglutaminase protein YP_002282398.1 KEGG: xau:Xaut_4750 hypothetical protein YP_002282399.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_414 dehydrogenase YP_002282400.1 PFAM: regulatory protein TetR; KEGG: sco:SCO5238 TetR-family protein YP_002282401.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_B5332 AraC family transcriptional regulator YP_002282402.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_3232 protein of unknown function DUF6, transmembrane YP_002282403.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_002282404.1 PFAM: aldehyde dehydrogenase; KEGG: ret:RHE_CH03161 probable aldehyde dehydrogenase protein YP_002282405.1 PFAM: protein of unknown function DUF1238; KEGG: ret:RHE_CH03162 GguC protein YP_002282406.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003385 xylose ABC transporter permease YP_002282407.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03164 xylose ABC transporter ATP-binding protein YP_002282408.1 KEGG: rec:RHECIAT_CH0003387 xylose ABC transporter substrate-binding protein YP_002282409.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH03166 transcriptional regulator protein, LysR family (possibly activator of the expression of ChvE protein) YP_002282410.1 KEGG: rec:RHECIAT_CH0003389 hypothetical protein YP_002282411.1 KEGG: rec:RHECIAT_CH0003390 hypothetical protein YP_002282412.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_CH0003391 myo-inositol 2-dehydrogenase protein YP_002282413.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: ret:RHE_PF00410 probable amino acid ABC transporter substrate-binding protein YP_002282414.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: aor:AO090011000058 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Pfam: MR_MLE_N MR_MLE Opiods_neuropep YP_002282415.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: abc:ACICU_02598 NADPH:quinone reductase YP_002282416.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sit:TM1040_2058 transcriptional regulator, LysR family YP_002282417.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smd:Smed_0125 GCN5-related N-acetyltransferase YP_002282418.1 PFAM: ROK family protein; KEGG: ret:RHE_CH03171 probable transcriptional regulator protein YP_002282419.1 TIGRFAM: D-xylose ABC transporter periplasmic substrate-binding protein; KEGG: rec:RHECIAT_CH0003393 xylose ABC transporter substrate-binding protein YP_002282420.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003394 xylose ABC transporter permease YP_002282421.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003395 xylose ABC transporter ATP-binding protein YP_002282422.1 KEGG: dre:100150554 hypothetical protein LOC100150554 YP_002282423.1 KEGG: ecm:EcSMS35_1794 hypothetical protein YP_002282424.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dre:100151225 hypothetical protein LOC100151225 YP_002282425.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr4309 aminoglycoside 6'-N-acetyltransferase YP_002282426.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: rec:RHECIAT_CH0003426 hypothetical protein YP_002282427.1 KEGG: rec:RHECIAT_CH0003427 hypothetical protein YP_002282428.1 KEGG: jan:Jann_3982 hypothetical protein YP_002282429.1 KEGG: rec:RHECIAT_CH0003429 hypothetical protein YP_002282430.1 PFAM: NapC/NirT cytochrome C domain protein; KEGG: sme:SMa1232 NapC membrane-bound tetraheme cytochrome C subunit YP_002282431.1 PFAM: nitrate reductase cytochrome C subunit (NapB); KEGG: atc:AGR_L_915 periplasmic nitrate reductase small subunit precursor YP_002282432.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_002282433.1 PFAM: NapD family protein; KEGG: smd:Smed_5179 NapD family protein YP_002282434.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sme:SMa1240 NapF component of periplasmic nitrate reductase YP_002282435.1 TIGRFAM: periplasmic nitrate reductase, NapE protein; PFAM: periplasmic nitrate reductase NapE; KEGG: sme:SMa1241 NapE component of periplasmic nitrate reductase YP_002282436.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003430 probable sugar ABC transporter permease YP_002282437.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003431 probable sugar ABC transporter ATP-binding protein YP_002282438.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rec:RHECIAT_CH0003432 UDP-glucose 4-epimerase protein YP_002282439.1 KEGG: rec:RHECIAT_CH0003433 probable sugar ABC transporter substrate-binding protein YP_002282440.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH03193 transcriptional regulator protein (activator), LysR family YP_002282441.1 PFAM: beta-lactamase; KEGG: ret:RHE_CH03194 beta-lactamase YP_002282442.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: rec:RHECIAT_CH0003436 probable UDP-glucose 4-epimerase protein YP_002282443.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03196 probable glycosyltransferase protein YP_002282444.1 PFAM: glycosyl transferase family 2; polysaccharide deacetylase; NodS family protein; methyltransferase type 11; methyltransferase type 12; KEGG: ret:RHE_CH03197 polysaccharide deacetylase/methyltransferase protein YP_002282445.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03198 probable glycosyltransferase protein YP_002282446.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003440 surface saccharide ABC transporter ATP-binding and permease YP_002282447.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0003441 probable glycosyltransferase protein YP_002282448.1 KEGG: rec:RHECIAT_CH0003443 hypothetical protein YP_002282449.1 KEGG: rec:RHECIAT_CH0003445 hypothetical protein YP_002282450.1 PFAM: TfuA domain protein core; KEGG: ret:RHE_CH03204 hypothetical protein YP_002282451.1 PFAM: protein of unknown function DUF181; KEGG: rec:RHECIAT_CH0003447 hypothetical protein YP_002282452.1 PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_CH03208 probable transcriptional regulator protein YP_002282453.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rec:RHECIAT_CH0003451 3-demethylubiquinone-9 3-methyltransferase protein YP_002282454.1 KEGG: ret:RHE_CH03210 exopolysaccharide production protein YP_002282455.1 PFAM: glycoside hydrolase family 10; KEGG: ret:RHE_CH03212 endo-1,4-beta-xylanase protein YP_002282456.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_CH0003454 glycosyl transferase protein YP_002282457.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0003455 acetyltransferase protein YP_002282458.1 PFAM: glycosyl transferase family 2; KEGG: npu:Npun_R0293 glycosyl transferase, family 2 YP_002282459.1 PFAM: ExoV-like protein; KEGG: ret:RHE_CH03215 ketal pyruvate transferase protein YP_002282460.1 PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH03216 exopolysaccharide polymerization and/or export protein YP_002282461.1 PFAM: polysaccharide pyruvyl transferase; KEGG: ret:RHE_CH03217 exopolysaccharide polymerization protein YP_002282462.1 KEGG: ret:RHE_CH03218 galactosyltransferase protein YP_002282463.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03220 glycosyltransferase protein YP_002282464.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03221 glycosyltransferase protein YP_002282465.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03222 glycosyltransferase protein YP_002282466.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH03223 glycosyltransferase protein YP_002282467.1 PFAM: oligosaccharide biosynthesis protein Alg14 like; KEGG: rec:RHECIAT_CH0003465 polysaccharide biosynthesis glucuronosyltransferase protein YP_002282468.1 PFAM: glycosyltransferase 28 domain; KEGG: ret:RHE_CH03226 glucuronosyltransferase protein YP_002282469.1 PFAM: lipolytic protein G-D-S-L family; KEGG: ret:RHE_CH03227 acyl-CoA thioesterase/lipase protein YP_002282470.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03228 protein secretion protein, HlyD family YP_002282471.1 KEGG: ret:RHE_CH03229 protease/lipase ABC transporter ATP-binding and permease; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA YP_002282472.1 SMART: hypothetical protein; carbohydrate-binding and sugar hydrolysis; KEGG: ret:RHE_CH03230 polysaccharidase protein YP_002282473.1 KEGG: ret:RHE_CH03231 autoaggregation protein YP_002282474.1 KEGG: rec:RHECIAT_CH0003472 hypothetical protein YP_002282475.1 KEGG: rec:RHECIAT_CH0003473 exopolysaccharide polymerization protein; TIGRFAM: exopolysaccharide transporter family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_002282476.1 KEGG: rec:RHECIAT_CH0003474 exopolysaccharide inner membrane protein YP_002282477.1 PFAM: polysaccharide export protein; KEGG: rec:RHECIAT_CH0003475 exopolysaccharide export protein YP_002282478.1 KEGG: rec:RHECIAT_CH0003476 endo-1,4-beta-xylanase protein (exopolysaccharide export) YP_002282479.1 KEGG: ret:RHE_CH03237 hypothetical protein YP_002282480.1 KEGG: ret:RHE_CH03238 UDP-glucose 6-dehydrogenase protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002282481.1 PFAM: metallophosphoesterase; KEGG: ret:RHE_CH03239 probable serine/threonine specific protein phosphatase protein YP_002282482.1 KEGG: rec:RHECIAT_CH0003482 hypothetical protein YP_002282483.1 PFAM: phospholipase/carboxylesterase; KEGG: rec:RHECIAT_CH0003484 esterase/lipase/thioesterase YP_002282484.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0003485 probable dioxygenase protein YP_002282485.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002282486.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: ret:RHE_CH03243 phosphomannomutase protein YP_002282487.1 KEGG: rec:RHECIAT_CH0003488 mannose-1-phosphate guanylyltransferase (GDP) protein; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_002282488.1 KEGG: rec:RHECIAT_CH0003489 hypothetical protein YP_002282489.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ret:RHE_CH03246 endonuclease/exonuclease/phosphatase family protein YP_002282490.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rec:RHECIAT_CH0003491 UDP-glucuronic acid epimerase protein YP_002282491.1 KEGG: rec:RHECIAT_CH0003492 hypothetical protein YP_002282492.1 PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: rec:RHECIAT_CH0003494 probable transcriptional regulator protein, TetR family YP_002282493.1 PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03250 hypothetical protein YP_002282494.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003496 probable ABC transporter ATP-binding protein YP_002282495.1 PFAM: ABC transporter; KEGG: rec:RHECIAT_CH0003497 probable ABC transporter permease YP_002282496.1 PFAM: ABC transporter; KEGG: ret:RHE_CH03253 probable ABC transporter permease YP_002282497.1 PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0003499 hypothetical protein YP_002282498.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003500 hypothetical conserved membrane protein YP_002282499.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: ret:RHE_CH03255 myo-inositol 2-dehydrogenase protein YP_002282500.1 PFAM: protein of unknown function DUF1037; KEGG: ret:RHE_CH03256 trehalosemaltose utilization protein YP_002282501.1 PFAM: small multidrug resistance protein; KEGG: rec:RHECIAT_CH0003503 methyl viologen/ethidium resistance protein YP_002282502.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0003504 probable transcriptional regulator protein, TetR family YP_002282503.1 PFAM: globin; KEGG: rec:RHECIAT_CH0003505 globin family protein YP_002282504.1 PFAM: protein of unknown function DUF423; KEGG: rec:RHECIAT_CH0003506 hypothetical protein YP_002282505.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: rec:RHECIAT_CH0003507 antibiotic biosynthesis monooxygenase protein YP_002282506.1 KEGG: rec:RHECIAT_CH0003508 hypothetical protein YP_002282507.1 KEGG: rec:RHECIAT_CH0003509 hypothetical protein YP_002282508.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ret:RHE_CH03265 membrane protein, transduces energy to outer membrane receptors YP_002282509.1 KEGG: rec:RHECIAT_CH0003511 hypothetical protein YP_002282510.1 KEGG: ret:RHE_CH03267 hemin transporter, hemin uptake protein YP_002282511.1 PFAM: Haemin-degrading family protein; KEGG: rec:RHECIAT_CH0003513 hemin transporter, degrading protein YP_002282512.1 PFAM: periplasmic binding protein; KEGG: rec:RHECIAT_CH0003514 hemin transporter, hemin-binding protein YP_002282513.1 PFAM: transporter permease; KEGG: ret:RHE_CH03270 hemin transporter, permease YP_002282514.1 with HmuTU is involved in the transport of hemin YP_002282515.1 KEGG: ret:RHE_CH03272 hypothetical protein YP_002282516.1 KEGG: rec:RHECIAT_CH0003518 hypothetical protein YP_002282517.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002282518.1 KEGG: ret:RHE_CH03274 hypothetical protein YP_002282519.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_002282520.1 PFAM: HWE histidine kinase; KEGG: rec:RHECIAT_CH0003522 two-component sensor histidine kinase protein YP_002282521.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002282522.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_002282523.1 KEGG: shm:Shewmr7_2130 hypothetical protein YP_002282524.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_002282525.1 PFAM: rhodanese; KEGG: rec:RHECIAT_CH0003527 rhodanese-related sulfurtransferase protein YP_002282526.1 KEGG: rec:RHECIAT_CH0003530 heme oxygenase protein YP_002282527.1 PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: rec:RHECIAT_CH0003531 phytochrome protein YP_002282528.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: rec:RHECIAT_CH0003532 probable transcriptional regulator protein, TetR family YP_002282529.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002282530.1 KEGG: afw:Anae109_3517 hypothetical protein YP_002282531.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_002282532.1 PFAM: cupin; KEGG: rec:RHECIAT_CH0003536 hypothetical protein YP_002282533.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03294 probable nitrate/sulfonate ABC transporter ATP-binding protein YP_002282534.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003538 probable nitrate/sulfonate ABC transporter permease YP_002282535.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003539 probable nitrate/sulfonate ABC transporter permease YP_002282536.1 PFAM: NMT1/THI5 like domain protein; KEGG: rec:RHECIAT_CH0003540 probable nitrate/sulfonate ABC transporter substrate-binding protein YP_002282537.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0003541 protein secretion protein, HlyD family YP_002282538.1 PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003542 probable acriflavin resistance protein (transporter) YP_002282539.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: ret:RHE_CH03300 urease accessory protein YP_002282540.1 PFAM: urease accessory protein UreF; KEGG: ret:RHE_CH03301 urease accessory protein YP_002282541.1 PFAM: UreE urease accessory domain protein; KEGG: rec:RHECIAT_CH0003545 urease accessory protein YP_002282542.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rec:RHECIAT_CH0003546 probable urease-associated protein YP_002282543.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003547 probable urease-associated protein YP_002282544.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002282545.1 KEGG: ret:RHE_CH03306 probable urease-associated protein YP_002282546.1 PFAM: protein of unknown function DUF1311; KEGG: rec:RHECIAT_CH0003550 probable urease-associated protein YP_002282547.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_002282548.1 PFAM: protein of unknown function DUF1272; KEGG: ret:RHE_CH03309 probable urease-associated protein YP_002282549.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_002282550.1 PFAM: urease accessory protein UreD; KEGG: rec:RHECIAT_CH0003554 urease accessory protein YP_002282551.1 KEGG: rec:RHECIAT_CH0003555 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_002282552.1 KEGG: ret:RHE_CH03313 hypothetical protein YP_002282553.1 KEGG: rec:RHECIAT_CH0003557 probable UreA or short-chain amide ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter ATP-binding protein UrtD; PFAM: ABC transporter; SMART: ATPase AAA YP_002282554.1 TIGRFAM: urea ABC transporter permease; PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003558 probable UreA or short-chain amide ABC transporter permease YP_002282555.1 TIGRFAM: urea ABC transporter permease UrtB; PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003559 probable UreA or short-chain amide ABC transporter permease YP_002282556.1 TIGRFAM: urea ABC transporter substrate-binding protein; KEGG: ret:RHE_CH03317 probable UreA or short-chain amide ABC transporter substrate-binding protein YP_002282557.1 TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: phosphoesterase PA-phosphatase related; KEGG: rec:RHECIAT_CH0003561 phosphatase protein YP_002282558.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0003562 probable two-component sensor histidine kinase protein YP_002282559.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ret:RHE_CH03320 probable two-component response regulator protein YP_002282560.1 PFAM: extracellular ligand-binding receptor; KEGG: ret:RHE_CH03321 amino acid ABC transporter substrate-binding protein YP_002282561.1 KEGG: ret:RHE_CH03322 hypothetical protein YP_002282562.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003566 amino acid ABC transporter ATP-binding protein YP_002282563.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003567 amino acid ABC transporter ATP-binding protein YP_002282564.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03325 amino acid ABC transporter permease YP_002282565.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03326 amino acid ABC transporter permease YP_002282566.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0003571 exopolysaccharide production protein YP_002282567.1 PFAM: sugar transferase; KEGG: rec:RHECIAT_CH0003572 exopolysaccharide production CDP-diacylglycerol-serine O-phosphatidyltransferase protein YP_002282568.1 PFAM: protein of unknown function DUF1153; KEGG: ret:RHE_CH03330 hypothetical protein YP_002282569.1 PFAM: paraquat-inducible protein A; KEGG: ret:RHE_CH03331 hypothetical protein YP_002282570.1 KEGG: ret:RHE_CH03332 acetyltransferase protein YP_002282571.1 KEGG: rec:RHECIAT_CH0003577 hypothetical protein YP_002282572.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_CH0003578 two-component response regulator protein controls chromosomal replication initiation YP_002282573.1 PFAM: response regulator receiver; KEGG: ret:RHE_CH03335 probable two-component response regulator protein YP_002282574.1 KEGG: ret:RHE_CH03336 hypothetical protein YP_002282575.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003581 hypothetical protein YP_002282576.1 KEGG: ret:RHE_CH03338 hypothetical protein YP_002282577.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ret:RHE_CH03339 probable RNA methylase protein YP_002282578.1 KEGG: rec:RHECIAT_CH0003584 hypothetical protein YP_002282579.1 KEGG: ret:RHE_CH03341 pseudouridylate synthase, ribosomal large subunit D protein; TIGRFAM: pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_002282580.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_002282581.1 KEGG: rec:RHECIAT_CH0003587 hypothetical protein YP_002282582.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002282583.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0003589 hypothetical conserved membrane protein YP_002282584.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003590 acetyltransferase protein YP_002282585.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; hypothetical protein; KEGG: rec:RHECIAT_CH0003591 sensory box/GGDEF family protein YP_002282586.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_002282587.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sme:SMa0237 dehydrogenase YP_002282588.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003593 multidrug-efflux system, acriflavin resistance protein YP_002282589.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0003594 multidrug-efflux system secretion protein, HlyD family YP_002282590.1 PFAM: alpha/beta hydrolase fold-3 domain protein; KEGG: ret:RHE_CH03350 esterase protein YP_002282591.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0003596 probable transcriptional regulator protein, LysR family YP_002282592.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria YP_002282593.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0003598 probable transcriptional regulator protein, LysR family YP_002282594.1 KEGG: ret:RHE_CH03354 hypothetical protein YP_002282595.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_002282596.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH03356 probable multidrug resistance protein YP_002282597.1 PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0003602 probable protein secretion protein, HlyD family YP_002282598.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family YP_002282599.1 PFAM: sodium/hydrogen exchanger; KEGG: rec:RHECIAT_CH0003604 probable Na+/H+ antiporter protein YP_002282600.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03360 multidrug-efflux system secretion protein, HlyD family YP_002282601.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003606 multidrug-efflux system, acriflavin resistance protein YP_002282602.1 PFAM: metallophosphoesterase; KEGG: ret:RHE_CH03362 probable serine/threonine specific protein phosphatase protein YP_002282603.1 PFAM: acyl-CoA dehydrogenase type 2 domain; KEGG: rec:RHECIAT_CH0003608 FMNH2-dependent monooxygenase protein YP_002282604.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rec:RHECIAT_CH0003609 transcriptional regulator protein YP_002282605.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_CH0003610 3-oxoacyl-[acyl-carrier-protein] reductase protein YP_002282606.1 PFAM: xylose isomerase; KEGG: rec:RHECIAT_CH0003611 hydroxypyruvate isomerase protein YP_002282607.1 KEGG: rec:RHECIAT_CH0003612 hypothetical protein YP_002282608.1 PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: ret:RHE_CH03368 hypothetical protein YP_002282609.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_002282610.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003615 sn-glycerol-3-phosphate ABC transporter permease YP_002282611.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003616 sn-glycerol-3-phosphate ABC transporter permease YP_002282612.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003617 sn-glycerol 3-phosphate ABC transporter substrate-binding protein YP_002282613.1 PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0003618 probable transcriptional regulator protein, ROK family YP_002282614.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003619 probable sugar ABC transporter substrate-binding protein YP_002282615.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003620 probable sugar ABC transporter permease YP_002282616.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003621 probable sugar ABC transporter permease YP_002282617.1 PFAM: sugar isomerase (SIS); KEGG: rec:RHECIAT_CH0003622 probable sugar-processing enzyme, possibly aminotransferase protein YP_002282618.1 PFAM: PfkB domain protein; KEGG: ret:RHE_CH03378 probable sugar kinase protein YP_002282619.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003624 probable sugar ABC transporter ATP-binding protein YP_002282620.1 PFAM: glycoside hydrolase family 16; KEGG: ret:RHE_CH03380 endo-1,3-1,4-beta-glycanase protein YP_002282621.1 PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH03381 probable exopolysaccharide polymerization/export protein YP_002282622.1 PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH03382 probable glycosyltransferase protein YP_002282623.1 PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH03383 probable glycosyltransferase protein YP_002282624.1 PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_CH03384 transcriptional regulator protein YP_002282625.1 PFAM: sugar transferase; KEGG: ret:RHE_CH03385 exopolysaccharide production protein YP_002282626.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: ret:RHE_CH03386 probable exopolysaccharide polymerization/transporter YP_002282627.1 KEGG: ret:RHE_CH03387 probable glycosyltransferase protein YP_002282628.1 PFAM: polysaccharide export protein; KEGG: ret:RHE_CH03388 exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein) YP_002282629.1 KEGG: ret:RHE_CH03389 hypothetical protein YP_002282631.1 KEGG: ret:RHE_CH03390 hypothetical protein YP_002282632.1 PFAM: glycosyl transferase family 8; KEGG: ret:RHE_CH03391 probable glycosyltransferase protein YP_002282633.1 KEGG: ret:RHE_CH03392 hypothetical protein YP_002282634.1 PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_CH03384 transcriptional regulator protein YP_002282635.1 PFAM: sugar transferase; KEGG: ret:RHE_CH03385 exopolysaccharide production protein YP_002282637.1 PFAM: acyltransferase 3; KEGG: ret:RHE_CH03393 probable acetyltransferase protein YP_002282638.1 KEGG: ret:RHE_CH03394 pyrroloquinoline-quinone-dependent quinate dehydrogenase protein; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: pyrrolo-quinoline quinone YP_002282639.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: rec:RHECIAT_PA0000124 probable adenylate cyclase protein YP_002282640.1 PFAM: protein of unknown function DUF808; KEGG: mex:Mext_1746 protein of unknown function DUF808 YP_002282641.1 KEGG: ret:RHE_CH03404 hypothetical protein YP_002282642.1 KEGG: rec:RHECIAT_CH0003649 hypothetical protein YP_002282643.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ret:RHE_CH03406 probable pseudouridylate synthase, ribosomal large subunit protein YP_002282644.1 Involved in nucleotide synthesis and salvage YP_002282645.1 PFAM: citrate transporter; TrkA-C domain protein; KEGG: rec:RHECIAT_CH0003652 transporter YP_002282646.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002282647.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0003654 probable transcriptional regulator protein, TetR family YP_002282648.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0003655 probable protein secretion protein, HlyD family YP_002282649.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH03412 probable multidrug efflux transporter YP_002282650.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ret:RHE_CH03413 nodulation protein (outer membrane efflux protein) YP_002282651.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_CH03414 probable transcriptional regulator protein, LacI family YP_002282652.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003659 spermidine/putrescine ABC transporter substrate-binding protein YP_002282653.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003660 spermidine/putrescine ABC transporter permease I protein YP_002282654.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03417 spermidine/putrescine ABC transporter permease II protein YP_002282655.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03418 spermidine/putrescine ABC transporter ATP-binding protein YP_002282656.1 PFAM: inosine/uridine-preferring nucleoside hydrolase; KEGG: rec:RHECIAT_CH0003663 inosine-adenosine-guanosine preferring nucleoside hydrolase protein YP_002282657.1 PFAM: amidohydrolase; KEGG: rec:RHECIAT_CH0003664 adenine deaminase protein YP_002282658.1 KEGG: ret:RHE_CH03429 probable hippurate hydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002282659.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: rec:RHECIAT_CH0003666 hypothetical protein YP_002282660.1 PFAM: protein of unknown function DUF1468; KEGG: rec:RHECIAT_CH0003667 hypothetical protein YP_002282661.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003668 hypothetical protein YP_002282662.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: ret:RHE_CH03433 probable two-component response regulator protein YP_002282663.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH03434 probable two-component sensor histidine kinase protein YP_002282664.1 PFAM: oxidoreductase molybdopterin binding; KEGG: ret:RHE_CH03435 probable oxidoreductase protein YP_002282665.1 KEGG: rec:RHECIAT_CH0003672 hypothetical protein YP_002282666.1 KEGG: rec:RHECIAT_CH0003673 hypothetical protein YP_002282667.1 KEGG: rec:RHECIAT_CH0003674 hypothetical protein YP_002282668.1 PFAM: phosphoglycerate mutase; KEGG: rec:RHECIAT_CH0003675 phosphoglycerate mutase protein YP_002282670.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rec:RHECIAT_CH0003677 sensory box/GGDEF family protein YP_002282671.1 PFAM: phosphate transporter; KEGG: mlo:mll3637 phosphate transporter YP_002282672.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation YP_002282673.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: rec:RHECIAT_CH0003679 xylulose-5-phosphate/fructose-6-phosphate phosphoketolase protein YP_002282674.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0003681 transcriptional regulator protein, AraC family for p-hydroxybenzoate hydroxylase protein YP_002282675.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_002282676.1 PFAM: extracellular ligand-binding receptor; KEGG: ret:RHE_CH03445 branched-chain amino acid ABC transporter substrate-binding protein YP_002282677.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003684 probable branched-chain amino acid ABC transporter permease YP_002282678.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0003685 probable branched-chain amino acid ABC transporter permease YP_002282679.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03448 probable branched-chain amino acid ABC transporter ATP-binding protein YP_002282680.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03449 probable branched-chain amino acid ABC transporter ATP-binding protein YP_002282681.1 TIGRFAM: outer membrane adhesin like proteiin; KEGG: ret:RHE_CH03450 autoaggregation protein (adhering protein) YP_002282682.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002282684.1 KEGG: rec:RHECIAT_CH0003692 hypothetical protein YP_002282685.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002282686.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_002282687.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0003695 probable heat resistant agglutinin 1 protein YP_002282688.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002282689.1 KEGG: rec:RHECIAT_CH0003697 cell division metalloproteinase protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002282690.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: ret:RHE_CH03459 cell cycle protein MesJ/cytosine deaminase-related protein YP_002282691.1 TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0003699 hypothetical protein YP_002282692.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: ret:RHE_CH03461 outer membrane lipoprotein YP_002282693.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_002282694.1 KEGG: ret:RHE_CH03463 signal peptide protein YP_002282695.1 KEGG: rec:RHECIAT_CH0003703 outer membrane protein YP_002282696.1 TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; KEGG: rec:RHECIAT_CH0003704 biopolymer transporter, ExbD/TolR family YP_002282697.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: rec:RHECIAT_CH0003705 biopolymer transporter YP_002282698.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase; KEGG: rec:RHECIAT_CH0003706 probable 4-hydroxybenzoyl-CoA thioesterase YP_002282699.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_CH0003707 sulfoquinovosyl diacylglycerol protein (sulfolipid biosynthesis) YP_002282700.1 PFAM: glycosyl transferase family 8; KEGG: rec:RHECIAT_CH0003708 glycosyltransferase protein (sulfolipid biosynthesis) YP_002282701.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_CH0003709 sulfolipid biosynthesis protein YP_002282702.1 KEGG: tcr:510377.134 mucin-associated surface protein (MASP), Pfam: Prosystemin PROSITE: ALA_RICH YP_002282703.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: ret:RHE_CH03471 probable 5-formyltetrahydrofolate cyclo-ligase protein YP_002282704.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003711 phosphatase protein YP_002282705.1 KEGG: rec:RHECIAT_CH0003712 hypothetical protein YP_002282706.1 KEGG: rec:RHECIAT_CH0003713 hypothetical protein YP_002282707.1 PFAM: protein of unknown function DUF28; KEGG: rec:RHECIAT_CH0003714 hypothetical protein YP_002282708.1 PFAM: monooxygenase; KEGG: rec:RHECIAT_CH0003715 probable oxidoreductase protein YP_002282709.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0003716 probable methyl-accepting chemotaxis protein YP_002282710.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002282711.1 TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: rec:RHECIAT_CH0003718 transcriptional regulator protein YP_002282712.1 KEGG: rec:RHECIAT_CH0003719 nucleic acid-binding PilT-like protein YP_002282713.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002282714.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002282715.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_CH0003722 probable phosphatase protein YP_002282716.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0003723 nucleoside hydrolase protein, MutT/NUDIX family YP_002282717.1 PFAM: DinB family protein; KEGG: ret:RHE_CH03484 hypothetical protein YP_002282718.1 PFAM: virulence factor family protein; KEGG: rec:RHECIAT_CH0003725 acid tolerance and virulence protein YP_002282719.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: rec:RHECIAT_CH0003726 hypothetical protein YP_002282720.1 PFAM: DoxX family protein; KEGG: rec:RHECIAT_CH0003727 hypothetical protein YP_002282721.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ret:RHE_CH03487 probable small-conductance mechanosensitive channel transmembrane protein YP_002282722.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_002282723.1 KEGG: rec:RHECIAT_CH0003730 hypothetical protein YP_002282724.1 PFAM: regulatory protein ArsR; KEGG: ret:RHE_CH03490 probable transcriptional regulator protein, ArsR family YP_002282725.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ret:RHE_CH03492 UDP-glucose 4-epimerase protein YP_002282726.1 KEGG: mlo:mlr1518 hypothetical protein YP_002282727.1 PFAM: protein of unknown function DUF710; KEGG: rec:RHECIAT_CH0003734 hypothetical protein YP_002282728.1 KEGG: rec:RHECIAT_CH0003735 hypothetical protein YP_002282729.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002282730.1 KEGG: rec:RHECIAT_CH0003737 glyceraldehyde 3-phosphate dehydrogenase protein; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002282731.1 KEGG: ret:RHE_CH03497 hypothetical protein YP_002282732.1 KEGG: rec:RHECIAT_CH0003739 hypothetical protein YP_002282733.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_002282734.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002282735.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: ret:RHE_CH03500 fructose-bisphosphate aldolase protein YP_002282736.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: rec:RHECIAT_CH0003744 phenazine biosynthesisprotein YP_002282737.1 KEGG: rec:RHECIAT_CH0003745 hypothetical protein YP_002282738.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0003746 probable transporter permease YP_002282739.1 PFAM: protein of unknown function DUF1192; KEGG: ret:RHE_CH03504 hypothetical protein YP_002282740.1 PFAM: protein of unknown function DUF1465; KEGG: ret:RHE_CH03505 hypothetical protein YP_002282741.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002282742.1 KEGG: ret:RHE_CH03507 probable multidrug ABC transporter ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA YP_002282743.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003751 hypothetical protein YP_002282744.1 PFAM: protein of unknown function DUF1508; KEGG: rec:RHECIAT_CH0003753 hypothetical protein YP_002282745.1 PFAM: DGPFAETKE family protein; KEGG: rec:RHECIAT_CH0003754 hypothetical protein YP_002282746.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: ret:RHE_CH03511 RNA polymerase sigma factor protein, ECF-family YP_002282747.1 PFAM: OmpA/MotB domain protein; KEGG: ret:RHE_CH03512 hypothetical protein YP_002282748.1 KEGG: ret:RHE_CH03513 hypothetical protein YP_002282749.1 PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_CH0003758 myo-inositol-1(or 4)-monophosphatase protein YP_002282750.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: rec:RHECIAT_CH0003764 chemotaxis-specific methylesterase protein YP_002282751.1 PFAM: MCP methyltransferase CheR-type; KEGG: rec:RHECIAT_CH0003765 methyl-accepting chemotaxis protein O-methyltransferase protein YP_002282752.1 PFAM: CheW domain protein; KEGG: rec:RHECIAT_CH0003766 chemotaxis signal transduction protein YP_002282753.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0003767 methyl-accepting chemotaxis protein YP_002282754.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0003768 methyl-accepting chemotaxis protein YP_002282755.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: rec:RHECIAT_CH0003769 methyl accepting chemotaxis protein YP_002282756.1 PFAM: CheW domain protein; KEGG: rec:RHECIAT_CH0003770 chemotaxis signal transduction protein YP_002282757.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: rec:RHECIAT_CH0003771 chemotaxis two-component sensor histidine kinase protein YP_002282758.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0003772 chemotaxis two-component response regulator protein YP_002282759.1 KEGG: rec:RHECIAT_CH0003773 hypothetical protein YP_002282760.1 KEGG: rec:RHECIAT_CH0003774 chemotaxis sensory transducer protein YP_002282761.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: rec:RHECIAT_CH0003775 hypothetical protein YP_002282762.1 catalyzes the formation of thiamine monophosphate from 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate and 4-methyl-5-(2-phosphono-oxyethyl)-thiazole YP_002282763.1 PFAM: protein of unknown function DUF81; KEGG: ret:RHE_CH03528 transporter permease YP_002282764.1 PFAM: regulatory protein ArsR; KEGG: ret:RHE_CH03529 probable transcriptional regulator protein YP_002282765.1 PFAM: protein of unknown function DUF465; KEGG: rec:RHECIAT_CH0003779 hypothetical protein YP_002282766.1 PFAM: protein of unknown function DUF465; KEGG: rec:RHECIAT_CH0003780 hypothetical protein YP_002282767.1 KEGG: rec:RHECIAT_CH0003781 phosphoribosylaminoimidazole carboxylase protein, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_002282768.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002282769.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_002282770.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: ret:RHE_CH03534 hypothetical protein YP_002282771.1 PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0003785 probable esterase/hydrolase protein YP_002282772.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr1638 probable oxidoreductase YP_002282773.1 SMART: helix-turn-helix domain protein; KEGG: mlo:mll1636 hypothetical protein YP_002282774.1 KEGG: ret:RHE_CH03536 gamma-glutamyltranspeptidase protein; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_002282775.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ret:RHE_CH03537 probable threonine dehydratase protein YP_002282776.1 KEGG: bra:BRADO2096 hypothetical protein YP_002282777.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH03538 transcriptional regulator protein, LysR family YP_002282778.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: ret:RHE_CH03539 hypothetical protein YP_002282779.1 PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_CH0003790 hypothetical protein YP_002282780.1 KEGG: rec:RHECIAT_CH0003791 hypothetical protein YP_002282781.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0003792 probable amino-acid efflux protein YP_002282782.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002282783.1 PFAM: protein of unknown function DUF1036; KEGG: rec:RHECIAT_CH0003794 hypothetical protein YP_002282784.1 PFAM: N-formylglutamate amidohydrolase; KEGG: rec:RHECIAT_CH0003795 amidohydrolase protein YP_002282785.1 PFAM: protein of unknown function DUF1244; KEGG: ret:RHE_CH03545 hypothetical protein YP_002282786.1 KEGG: rec:RHECIAT_CH0003797 hypothetical protein YP_002282787.1 PFAM: protein of unknown function DUF882; peptidase M15A; KEGG: rec:RHECIAT_CH0003800 hypothetical protein YP_002282788.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: ret:RHE_CH03548 sigma-54-dependent transcriptional regulator (activator) protein YP_002282789.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase F; KEGG: rec:RHECIAT_CH0003802 oligoendopeptidase F protein YP_002282790.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_002282791.1 KEGG: rec:RHECIAT_CH0003804 probable 4-amino-4-deoxychorismate lyase protein YP_002282792.1 PFAM: YCII-related; KEGG: ret:RHE_CH03552 hypothetical protein YP_002282793.1 PFAM: homospermidine synthase; KEGG: rec:RHECIAT_CH0003806 homospermidine synthase protein YP_002282794.1 KEGG: ret:RHE_CH03554 outer membrane lipoprotein YP_002282795.1 KEGG: rec:RHECIAT_CH0003808 hypothetical protein YP_002282796.1 PFAM: peptidoglycan-binding LysM; metallophosphoesterase; 5'-nucleotidase domain protein; KEGG: ret:RHE_CH03555 probable 5'-nucleotidase protein YP_002282797.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002282798.1 PFAM: band 7 protein; KEGG: rec:RHECIAT_CH0003811 membrane protease protein YP_002282799.1 PFAM: protein of unknown function DUF107; KEGG: rec:RHECIAT_CH0003812 hypothetical protein YP_002282800.1 KEGG: ret:RHE_CH03559 polysialic acid capsule expression protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_002282801.1 KEGG: rec:RHECIAT_CH0003814 hypothetical protein YP_002282802.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: smd:Smed_2199 LysR family transcriptional regulator YP_002282803.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: sme:SMc01663 oxidoreductase protein YP_002282804.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: sme:SMc01662 oxidoreductase protein YP_002282805.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: swi:Swit_4621 Rieske (2Fe-2S) domain protein YP_002282806.1 KEGG: rec:RHECIAT_CH0003815 UTP--glucose-1-phosphate uridylyltransferase protein; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase YP_002282807.1 TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding protein; KEGG: rec:RHECIAT_CH0003816 probable membrane-bound lytic murein transglycosylase protein YP_002282808.1 PFAM: protein of unknown function DUF459; KEGG: rec:RHECIAT_CH0003817 hypothetical protein YP_002282809.1 glutamate synthase is composed of subunits alpha and beta; subunit beta is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the subunit alpha, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002282810.1 PFAM: glutamine amidotransferase class-II; glutamate synthase subunit alpha domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rec:RHECIAT_CH0003820 glutamate synthase (NADPH) protein, large subunit YP_002282811.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rec:RHECIAT_CH0003822 low-specificity L-threonine aldolase protein YP_002282812.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0003823 probable transcriptional regulator protein, LysR family YP_002282813.1 PFAM: sodium symporter; KEGG: ret:RHE_CH03570 Na+/bile acid cotransporter YP_002282814.1 PFAM: heat shock protein Hsp20; KEGG: ret:RHE_CH03571 molecular chaperone small heat shock protein YP_002282815.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_CH03572 lysophospholipase L2 protein YP_002282816.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: ret:RHE_CH03573 probable monophosphatase protein YP_002282817.1 PFAM: N-formylglutamate amidohydrolase; KEGG: rec:RHECIAT_CH0003837 probable N-formylglutamate amidohydrolase protein YP_002282818.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0003838 probable two-component response regulator protein YP_002282819.1 PFAM: porin; KEGG: rec:RHECIAT_CH0003841 porin outer membrane protein YP_002282820.1 KEGG: ret:RHE_CH03579 hypothetical protein YP_002282821.1 KEGG: rec:RHECIAT_CH0003843 hypothetical protein YP_002282822.1 PFAM: MgtC/SapB transporter; KEGG: sme:SMc00799 hypothetical protein YP_002282823.1 KEGG: rec:RHECIAT_CH0003844 hypothetical protein YP_002282824.1 KEGG: rec:RHECIAT_CH0003845 hypothetical protein YP_002282825.1 PFAM: protein of unknown function DUF475; KEGG: rec:RHECIAT_CH0003846 hypothetical protein YP_002282826.1 KEGG: sme:SMb20727 hypothetical protein YP_002282827.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: ret:RHE_CH03582 hypothetical conserved membrane protein YP_002282828.1 KEGG: rec:RHECIAT_CH0003849 hypothetical protein YP_002282829.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0003850 hypothetical protein YP_002282830.1 SMART: hypothetical protein; KEGG: met:M446_1556 hypothetical protein YP_002282831.1 KEGG: rec:RHECIAT_CH0003851 probable iron ABC transporter substrate-binding protein YP_002282832.1 PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bbt:BBta_0027 aspartate/ornithine carbamoyltransferase family protein YP_002282833.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: ret:RHE_CH03586 adenylate cyclase protein YP_002282834.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_CH0003854 probable two-component response regulator protein YP_002282835.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: ret:RHE_CH03588 probable two-component sensor histidine kinase protein YP_002282836.1 PFAM: transglutaminase; transglutaminase domain protein; KEGG: rec:RHECIAT_CH0003856 transglutaminase-like protein YP_002282837.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rec:RHECIAT_CH0003857 hypothetical protein YP_002282838.1 PFAM: transglutaminase; transglutaminase domain protein; KEGG: ret:RHE_CH03591 transglutaminase-like protein YP_002282839.1 PFAM: von Willebrand factor type A; KEGG: rec:RHECIAT_CH0003859 hypothetical protein YP_002282840.1 KEGG: rec:RHECIAT_CH0003861 glycogen phosphorylase protein; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_002282841.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002282842.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002282843.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002282844.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_002282845.1 KEGG: rec:RHECIAT_CH0003866 glycosyl hydrolase (glycogen debranching) protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002282846.1 PFAM: MaoC domain protein dehydratase; KEGG: rec:RHECIAT_CH0003867 dehydratase nodulation protein YP_002282847.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0003868 probable glyoxylase protein YP_002282848.1 TIGRFAM: sarcosine oxidase subunit gamma family; PFAM: Sarcosine oxidase subunit gamma; KEGG: rec:RHECIAT_CH0003869 sarcosine oxidase protein, subunit gamma YP_002282849.1 TIGRFAM: sarcosine oxidase subunit alpha family; PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glycine cleavage T-protein barrel; KEGG: ret:RHE_CH03601 sarcosine oxidase subunit alpha protein YP_002282850.1 TIGRFAM: sarcosine oxidase subunit delta family; PFAM: Sarcosine oxidase subunit delta heterotetrameric; KEGG: rec:RHECIAT_CH0003871 sarcosine oxidase protein, subunit delta YP_002282851.1 TIGRFAM: sarcosine oxidase subunit beta family; PFAM: FAD dependent oxidoreductase; KEGG: ret:RHE_CH03603 sarcosine oxidase subunit beta protein YP_002282852.1 KEGG: rec:RHECIAT_CH0003873 hypothetical protein YP_002282853.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: ret:RHE_CH03605 adenylate cyclase protein YP_002282854.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0003875 adenylate cyclase protein YP_002282855.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002282856.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: rec:RHECIAT_CH0003877 probable O-linked GlcNAc transferase protein YP_002282857.1 PFAM: histidine kinase HAMP region domain protein; HWE histidine kinase; KEGG: rec:RHECIAT_CH0003878 two-component sensor histidine kinase protein YP_002282858.1 PFAM: protein of unknown function DUF992; KEGG: rec:RHECIAT_CH0003879 hypothetical protein YP_002282859.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: rec:RHECIAT_CH0003880 NAD(P)(+) transhydrogenase (AB-specific) protein, beta subunit YP_002282860.1 KEGG: rec:RHECIAT_CH0003881 NAD(P)(+) transhydrogenase (AB-specific) protein, subunit alpha YP_002282861.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rec:RHECIAT_CH0003882 NAD(P)(+) transhydrogenase (AB-specific) protein, alpha subunit YP_002282862.1 PFAM: aa3 type cytochrome C oxidase subunit IV; KEGG: ret:RHE_CH03614 hypothetical protein YP_002282863.1 KEGG: ret:RHE_CH03615 hypothetical protein YP_002282864.1 KEGG: rec:RHECIAT_CH0003885 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; hypothetical protein; SMART: PAS domain containing protein YP_002282865.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: ret:RHE_CH03617 TRAP mannitol/C4-dicarboxylate transporter permease YP_002282866.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: ret:RHE_CH03618 TRAP mannitol/C4-dicarboxylate transporter permease YP_002282867.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: ret:RHE_CH03619 probable TRAP mannitol/C4-dicarboxylate transporter substrate-binding protein YP_002282868.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: rec:RHECIAT_CH0003889 probable glutamine amidotransferase protein YP_002282869.1 KEGG: bvi:Bcep1808_2262 hypothetical protein YP_002282870.1 KEGG: ttj:TTHA1288 exonuclease SbcC YP_002282871.1 PFAM: stress protein; KEGG: bvi:Bcep1808_2260 stress protein YP_002282872.1 KEGG: ajs:Ajs_1860 hypothetical protein YP_002282873.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0003890 probable oxidoreductase/dehydrogenase protein YP_002282874.1 KEGG: ret:RHE_CH03622 probable transcriptional regulator protein, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_002282875.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH03623 probable transcriptional regulator protein, MarR family YP_002282876.1 PFAM: creatininase; KEGG: ret:RHE_CH03624 probable creatinine amidohydrolase (creatininase) protein YP_002282877.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: ret:RHE_CH03625 cobalamin synthesis protein, P47K family YP_002282878.1 KEGG: rec:RHECIAT_CH0003895 hypothetical protein YP_002282879.1 KEGG: ret:RHE_CH03627 serine acetyltransferase protein; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_002282880.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rec:RHECIAT_CH0003897 sensory box/GGDEF family protein YP_002282881.1 PFAM: beta-lactamase; KEGG: sme:SMb20965 exported enzyme, similar to 6-aminohexanoate-dimer hydrolase protein YP_002282882.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003898 acetyltransferase protein YP_002282883.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rec:RHECIAT_CH0003899 probable ornithine decarboxylase protein YP_002282884.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH03630 probable transcriptional regulator protein, LysR family YP_002282885.1 PFAM: protein of unknown function DUF1007; KEGG: rec:RHECIAT_CH0003901 hypothetical protein YP_002282886.1 PFAM: high-affinity nickel-transporter; KEGG: rec:RHECIAT_CH0003902 ABC transporter permease YP_002282887.1 KEGG: rec:RHECIAT_CH0003903 hypothetical protein YP_002282888.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003904 probable acetyltransferase protein YP_002282889.1 PFAM: protein of unknown function DUF533; KEGG: rec:RHECIAT_CH0003905 hypothetical protein YP_002282890.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_002282891.1 PFAM: adenylate cyclase; KEGG: ret:RHE_CH03636 hypothetical protein YP_002282892.1 PFAM: CHAD domain containing protein; KEGG: ret:RHE_CH03637 hypothetical protein YP_002282893.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sit:TM1040_1863 glyoxalase/bleomycin resistance protein/dioxygenase YP_002282894.1 PFAM: rhodanese; KEGG: rec:RHECIAT_CH0003909 probable rhodanese-related sulfurtransferase protein YP_002282895.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; KEGG: ret:RHE_CH03639 sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like) YP_002282896.1 KEGG: rec:RHECIAT_CH0003911 beta-glucosidase protein; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_002282897.1 PFAM: DoxX family protein; KEGG: rec:RHECIAT_CH0003912 hypothetical conserved membrane protein YP_002282898.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: ret:RHE_CH03642 probable oxidoreductase protein YP_002282899.1 PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: rec:RHECIAT_CH0003914 xylose isomerase domain protein YP_002282900.1 KEGG: rec:RHECIAT_CH0003915 probable sugar ABC transporter substrate-binding protein YP_002282901.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03645 probable sugar ABC transporter permease YP_002282902.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03646 probable sugar ABC transporter ATP-binding protein YP_002282903.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH03647 probable transcriptional regulator protein, LacI family YP_002282904.1 catalyzes the interconversion of D-xylose to D-xylulose YP_002282905.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0003920 xylulose kinase protein YP_002282906.1 PFAM: regulatory protein LacI; KEGG: ret:RHE_CH03650 probable transcriptional regulator protein, LacI family YP_002282907.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0003922 probable multidrug efflux transporter permease protein YP_002282908.1 PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0003923 protein secretion protein, HlyD family YP_002282909.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0003924 probable transcriptional regulator protein, TetR family YP_002282910.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: rec:RHECIAT_CH0003925 probable transcriptional regulator protein YP_002282911.1 PFAM: integral membrane protein TerC; KEGG: ret:RHE_CH03655 probable transporter, TerC family YP_002282912.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002282913.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002282914.1 KEGG: rec:RHECIAT_CH0003929 hypothetical protein YP_002282915.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0003930 probable transcriptional regulator protein, LysR family YP_002282916.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH03660 spermidine/putrescine ABC transporter substrate-binding protein YP_002282917.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003932 probable spermidine/putrescine ABC transporter ATP-binding protein YP_002282918.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003933 probable spermidine/putrescine ABC transporter permease YP_002282919.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03663 probable spermidine/putrescine ABC transporter permease YP_002282920.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_002282921.1 PFAM: integral membrane protein TerC; KEGG: smd:Smed_1799 integral membrane protein TerC YP_002282922.1 PFAM: protein of unknown function DUF1328; KEGG: rec:RHECIAT_CH0003936 hypothetical protein YP_002282924.1 PFAM: DoxX family protein; KEGG: ret:RHE_CH03665 hypothetical conserved membrane protein YP_002282925.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: mlo:mll1962 hypothetical protein YP_002282926.1 PFAM: beta-lactamase; KEGG: mlo:mll1963 hypothetical protein YP_002282927.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_0976 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002282928.1 KEGG: bid:Bind_0338 transmembrane anti-sigma factor YP_002282929.1 PFAM: protein of unknown function DUF1345; KEGG: rec:RHECIAT_CH0003938 hypothetical protein YP_002282930.1 KEGG: ret:RHE_CH03667 transaldolase B; TIGRFAM: transaldolase; PFAM: transaldolase YP_002282931.1 PFAM: sugar-binding domain protein; KEGG: rec:RHECIAT_CH0003941 probable transcriptional regulator protein YP_002282932.1 KEGG: rec:RHECIAT_CH0003943 probable 6-O-methylguanine-DNA methyltransferase (DNA repair) protein; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SMART: helix-turn-helix- domain containing protein AraC type YP_002282933.1 KEGG: rec:RHECIAT_CH0003944 hypothetical conserved membrane protein YP_002282934.1 KEGG: rec:RHECIAT_CH0003945 endonuclease III protein; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_002282935.1 role in sulfur assimilation YP_002282936.1 PFAM: helix-turn-helix protein RpiR; KEGG: rec:RHECIAT_CH0003949 transcriptional regulator protein YP_002282937.1 TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_CH0003950 ribulokinase protein YP_002282938.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: rec:RHECIAT_CH0003951 probable hydrolase phosphatase protein YP_002282939.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: rec:RHECIAT_CH0003952 mannitol 2-dehydrogenase protein YP_002282940.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003953 sorbitol/mannitol ABC transporter ATP-binding protein YP_002282941.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03680 sorbitol/mannitol ABC transporter permease YP_002282942.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003955 sorbitol/mannitol ABC transporter permease YP_002282943.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0003956 sorbitol/mannitol ABC transporter substrate-binding protein YP_002282944.1 PFAM: sugar-binding domain protein; KEGG: rec:RHECIAT_CH0003957 sorbitol/mannitol operon transcriptional regulator protein YP_002282945.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: rec:RHECIAT_CH0003958 exopolysaccharide biosynthesis protein YP_002282946.1 PFAM: ROK family protein; KEGG: rec:RHECIAT_CH0003959 transcriptional regulator protein, ROK family YP_002282947.1 PFAM: glycoside hydrolase, family 20, catalytic core; KEGG: rec:RHECIAT_CH0003960 beta-N-acetylhexosaminidase protein YP_002282948.1 KEGG: ret:RHE_CH02301 amino acid ABC transporter substrate-binding protein YP_002282949.1 KEGG: ret:RHE_CH02300 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein (4-hydroxyphenylacetate catabolism protein); TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase YP_002282950.1 KEGG: ret:RHE_CH02299 2-oxo-hepta-3-ene-1,7-dioate hydratase protein; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase YP_002282951.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: ret:RHE_CH02298 probable catechol 1,2-dioxygenase protein YP_002282952.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_CH02297 probable transcriptional regulator protein, GntR family YP_002282953.1 PFAM: xylose isomerase; KEGG: ret:RHE_CH02296 hypothetical protein YP_002282954.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02295 probable amino acid ABC transporter permease protein YP_002282955.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH02294 probable amino acid ABC transporter permease protein YP_002282956.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_CH02293 probable amino acid ABC transporter substrate-binding protein YP_002282957.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH02292 probable amino acid ABC transporter ATP-binding protein YP_002282958.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002282959.1 KEGG: ret:RHE_CH02290 5-carboxymethyl-2-hydroxymuconate delta isomerase protein YP_002282960.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002282961.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: ret:RHE_CH02288 probable oxidoreductase protein YP_002282962.1 PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0003961 multidrug efflux transporter YP_002282963.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03688 multidrug efflux transporter YP_002282964.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_CH0003963 transcriptional regulator protein, TetR family YP_002282965.1 PFAM: OsmC family protein; KEGG: rec:RHECIAT_CH0003964 osmotically inducible protein YP_002282966.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH03691 short chain dehydrogenase YP_002282967.1 PFAM: aldose 1-epimerase; KEGG: rec:RHECIAT_CH0003966 aldose-1-epimerase protein YP_002282968.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002282969.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002282970.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0003969 probable sugar ABC transporter substrate-binding protein YP_002282971.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_CH03696 probable transcriptional regulator protein, GntR family YP_002282972.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_CH03697 galactonate dehydratase protein YP_002282973.1 PFAM: DoxX family protein; KEGG: ret:RHE_CH03698 hypothetical conserved membrane protein YP_002282974.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002282975.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_CH03700 adenylate cyclase protein YP_002282976.1 PFAM: regulatory protein LacI; KEGG: rec:RHECIAT_CH0003975 transcriptional regulator protein YP_002282977.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: ret:RHE_CH03702 hypothetical protein YP_002282978.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0003977 oxidoreductase protein YP_002282979.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: rec:RHECIAT_CH0003978 gluconolactonase protein YP_002282980.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: rec:RHECIAT_CH0003979 beta-D-galactosidase protein YP_002282981.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0003980 probable sugar ABC transporter ATP-binding protein YP_002282982.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03707 probable sugar ABC transporter permease YP_002282983.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0003982 probable sugar ABC transporter permease YP_002282984.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH03709 probable sugar ABC transporter substrate-binding protein YP_002282985.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH03710 transcriptional regulator protein, LacI family YP_002282986.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rec:RHECIAT_CH0003984 succinoglycan biosynthesis transcriptional regulator protein YP_002282987.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: rec:RHECIAT_CH0003985 6-pyruvoyl tetrahydropterin synthase protein YP_002282988.1 TIGRFAM: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; PFAM: radical SAM protein; KEGG: rec:RHECIAT_CH0003986 organic-radical-activating protein YP_002282989.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rec:RHECIAT_CH0003987 adenylate cyclase protein YP_002282990.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002282991.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002282992.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002282993.1 TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0003991 glutaredoxin protein YP_002282994.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rec:RHECIAT_CH0003992 probable heavy metal-transporting ATPase protein YP_002282995.1 PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; KEGG: ret:RHE_CH03720 transcriptional regulator protein, MerR family YP_002282996.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_CH0003994 dehydrogenase protein YP_002282997.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: rec:RHECIAT_CH0003995 peptide-methionine (R)-S-oxide reductase protein YP_002282998.1 PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: rec:RHECIAT_CH0003996 probable transcriptional regulator protein YP_002282999.1 PFAM: aldehyde dehydrogenase; KEGG: rec:RHECIAT_CH0003997 aldehyde dehydrogenase (NAD(+)) protein YP_002283000.1 PFAM: protein of unknown function DUF779; KEGG: rec:RHECIAT_CH0003998 hypothetical protein YP_002283001.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: ret:RHE_CH03725 hypothetical protein YP_002283002.1 KEGG: ret:RHE_CH03726 hypothetical protein YP_002283003.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH03727 3-oxoacyl-[acyl-carrier protein] reductase protein YP_002283004.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rec:RHECIAT_CH0004002 Ca2+/H+ antiporter protein YP_002283005.1 KEGG: rec:RHECIAT_CH0004003 hypothetical protein YP_002283006.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0004005 multidrug efflux protein YP_002283007.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rec:RHECIAT_CH0004006 multidrug efflux protein, Acr/RND family YP_002283008.1 KEGG: rec:RHECIAT_CH0004007 hypothetical protein YP_002283009.1 KEGG: rec:RHECIAT_CH0004008 hypothetical protein YP_002283010.1 KEGG: rec:RHECIAT_CH0004009 hypothetical protein YP_002283011.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: atc:AGR_C_3278 hypothetical protein YP_002283012.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: atc:AGR_C_3279 hypothetical protein YP_002283013.1 PFAM: peptidase M23; KEGG: rec:RHECIAT_CH0004020 peptidase protein, M23/M37 family YP_002283014.1 KEGG: rec:RHECIAT_CH0004021 chaperone heat-shock protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA; SMART: ATPase AAA YP_002283015.1 KEGG: rec:RHECIAT_CH0004022 hypothetical protein YP_002283016.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: RNA methylase; methyltransferase small; methyltransferase type 12; KEGG: ret:RHE_CH03755 protoporphyrinogen oxidase (methyltransferase) protein YP_002283017.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002283018.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: rec:RHECIAT_CH0004025 phosphoenolpyruvate--protein phosphotransferase protein (enzyme I of the phosphotransferase system) YP_002283019.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002283020.1 Involved in ubiquinone biosynthesis YP_002283021.1 KEGG: sen:SACE_1731 hypothetical protein YP_002283022.1 PFAM: protein of unknown function DUF1178; KEGG: rec:RHECIAT_CH0004028 hypothetical protein YP_002283023.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ret:RHE_CH03761 amidohydrolase protein YP_002283024.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rec:RHECIAT_CH0004030 glutaredoxin protein YP_002283025.1 KEGG: rec:RHECIAT_CH0004031 competence protein F (phosphoribosyltransferase protein) YP_002283026.1 KEGG: rec:RHECIAT_CH0004032 methyltransferase protein YP_002283027.1 PFAM: Flp/Fap pilin component; KEGG: rec:RHECIAT_CH0004033 pilus component protein YP_002283028.1 KEGG: ret:RHE_CH03765 hypothetical protein YP_002283029.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0004035 NTP pyrophosphohydrolase protein YP_002283030.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH03767 acetyltransferase protein YP_002283031.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002283032.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rec:RHECIAT_CH0004038 peptidyl-prolyl cis-trans isomerase D signal peptide protein YP_002283033.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002283034.1 PFAM: polysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0004040 polysaccharide export related protein YP_002283035.1 KEGG: ret:RHE_CH03772 hypothetical protein YP_002283036.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rec:RHECIAT_CH0004042 acetyl-CoA synthetase protein YP_002283037.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0004043 oxidoreductase protein YP_002283038.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_CH03775 transcriptional regulator protein, TetR family YP_002283039.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0004046 probable monocarboxylate transporter permease YP_002283040.1 KEGG: rec:RHECIAT_CH0004048 hypothetical protein YP_002283041.1 KEGG: rec:RHECIAT_CH0004049 hypothetical protein YP_002283042.1 PFAM: cyclic nucleotide-binding; sodium/hydrogen exchanger; KEGG: ret:RHE_CH03780 probable cation transporter YP_002283043.1 KEGG: rec:RHECIAT_CH0004051 hypothetical protein YP_002283044.1 KEGG: rec:RHECIAT_CH0004052 transmembrane-associated alkaline phosphatase protein YP_002283045.1 KEGG: rec:RHECIAT_CH0004053 hypothetical protein YP_002283046.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rec:RHECIAT_CH0004054 endonuclease protein YP_002283047.1 PFAM: HhH-GPD family protein; KEGG: rec:RHECIAT_CH0004055 DNA-3-methyladenine glycosidase II protein YP_002283048.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_002283049.1 PFAM: ribonuclease BN; KEGG: rec:RHECIAT_CH0004057 ribonuclease protein YP_002283050.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH03788 short chain dehydrogenase YP_002283051.1 KEGG: rec:RHECIAT_CH0004059 hypothetical protein YP_002283052.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rec:RHECIAT_CH0004060 cobalamin adenosultransferase protein YP_002283053.1 PFAM: rhomboid family protein; KEGG: rec:RHECIAT_CH0004061 peptidase protein YP_002283054.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: ret:RHE_PF00405 electron transport flavoprotein, subunit beta YP_002283055.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; KEGG: ret:RHE_PF00404 electron-transport flavoprotein, alpha-subunit YP_002283056.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_002283057.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: rec:RHECIAT_CH0004065 thiol:disulfide interchange protein YP_002283058.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002283059.1 KEGG: rec:RHECIAT_CH0004067 hypothetical protein YP_002283060.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rec:RHECIAT_CH0004068 diaminopimelate decarboxylase protein YP_002283061.1 KEGG: rec:RHECIAT_CH0004069 hypothetical protein YP_002283062.1 PFAM: response regulator receiver; KEGG: rec:RHECIAT_CH0004070 probable two-component response regulator protein YP_002283063.1 KEGG: rec:RHECIAT_CH0004071 hypoxanthine phosphoribosyltransferase protein; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002283064.1 KEGG: rec:RHECIAT_CH0004072 hypothetical protein YP_002283065.1 KEGG: rec:RHECIAT_CH0004073 cell division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA YP_002283066.1 KEGG: ret:RHE_CH03803 cell division protein YP_002283067.1 PFAM: protein of unknown function DUF218; KEGG: rec:RHECIAT_CH0004075 hypothetical protein YP_002283068.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rec:RHECIAT_CH0004076 1-acylglycerol-3-phosphate O-acyltransferase protein YP_002283069.1 PFAM: cation transport protein ChaC; AIG2 family protein; KEGG: rec:RHECIAT_CH0004077 cation transporter YP_002283070.1 KEGG: rec:RHECIAT_CH0004078 hypothetical protein YP_002283071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004079 acetyltransferase protein YP_002283072.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate YP_002283073.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002283074.1 PFAM: methyltransferase type 11; KEGG: rec:RHECIAT_CH0004082 methyltransferase protein YP_002283075.1 KEGG: ret:RHE_CH03812 hydroxyacylgluthatione hydrolase protein; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_002283076.1 PFAM: protein of unknown function DUF985; KEGG: ret:RHE_CH03813 hypothetical protein YP_002283077.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH03814 hypothetical protein YP_002283078.1 KEGG: ret:RHE_CH03815 hypothetical protein YP_002283079.1 required for 70S ribosome assembly YP_002283080.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: rec:RHECIAT_CH0004089 hypothetical protein YP_002283081.1 KEGG: rec:RHECIAT_CH0004090 hypothetical protein YP_002283082.1 KEGG: ret:RHE_CH03819 hypothetical protein YP_002283083.1 KEGG: rec:RHECIAT_CH0004092 cobalamin biosynthesis protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A YP_002283084.1 KEGG: ret:RHE_CH03821 cobalamin biosynthesis protein; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5 YP_002283085.1 PFAM: heat shock protein DnaJ domain protein; KEGG: rec:RHECIAT_CH0004094 molecular chaperone protein DnaJ YP_002283086.1 PFAM: BolA family protein; KEGG: smd:Smed_2562 BolA family protein YP_002283087.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter; KEGG: rec:RHECIAT_CH0004095 hemolysin protein YP_002283088.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002283089.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002283090.1 KEGG: sme:SMc00692 hypothetical signal peptide protein YP_002283091.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002283092.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002283093.1 PFAM: protein of unknown function DUF949; KEGG: rec:RHECIAT_CH0004100 hypothetical protein YP_002283094.1 PFAM: SirA family protein; KEGG: rec:RHECIAT_CH0004101 hypothetical protein YP_002283095.1 PFAM: protein of unknown function DUF1353; KEGG: dac:Daci_3096 protein of unknown function DUF1353 YP_002283098.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_CH0004102 probable cobalamin synthesis protein YP_002283099.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: rec:RHECIAT_CH0004103 D-alanyl-D-alanine carboxypeptidase protein YP_002283100.1 KEGG: rec:RHECIAT_CH0004104 probable amidohydrolase protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002283101.1 KEGG: rsp:RSP_2763 hypothetical protein YP_002283102.1 KEGG: bcs:BCAN_A0991 hypothetical protein YP_002283103.1 KEGG: rec:RHECIAT_CH0004116 hypothetical protein YP_002283104.1 KEGG: rec:RHECIAT_CH0004117 hypothetical protein YP_002283106.1 PFAM: transporter; KEGG: rec:RHECIAT_CH0004118 hypothetical protein YP_002283107.1 KEGG: rec:RHECIAT_CH0004119 hypothetical protein YP_002283108.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002283109.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004121 sugar ABC transporter ATP-binding protein YP_002283110.1 PFAM: protein of unknown function DUF1680; KEGG: rec:RHECIAT_CH0004122 hypothetical protein YP_002283111.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0004123 sugar ABC transporter permease YP_002283112.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0004124 sugar ABC transporter permease YP_002283113.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0004125 sugar ABC transporter substrate-binding protein YP_002283114.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH03845 transcriptional regulator protein, LacI family YP_002283115.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_002283116.1 PFAM: 17 kDa surface antigen; KEGG: rec:RHECIAT_CH0004128 hypothetical protein YP_002283117.1 PFAM: hypothetical protein; surface antigen variable number repeat protein; KEGG: rec:RHECIAT_CH0004129 outer membrane protein, protective antigen YP_002283118.1 PFAM: protein of unknown function DUF490; KEGG: rec:RHECIAT_CH0004130 hypothetical protein YP_002283119.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH03850 transcriptional regulator protein YP_002283120.1 TIGRFAM: arginase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: ret:RHE_CH03851 arginase protein YP_002283121.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: ret:RHE_CH03852 ornithine--oxo-acid transaminase YP_002283122.1 PFAM: CheW domain protein; KEGG: ret:RHE_CH03853 chemotaxis signal transduction protein YP_002283123.1 KEGG: rec:RHECIAT_CH0004135 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; hypothetical protein; hypothetical protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_002283124.1 PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_343 hypothetical protein YP_002283125.1 KEGG: ret:RHE_CH03855 NAD-dependent formate dehydrogenase, subunit delta protein YP_002283126.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_002283127.1 TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rec:RHECIAT_CH0004138 formate dehydrogenase protein, subunit alpha YP_002283128.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: ret:RHE_CH03858 formate dehydrogenase subunit beta protein YP_002283129.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor YP_002283130.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH03860 probable transcriptional regulator protein, LysR family YP_002283131.1 PFAM: regulatory protein ArsR; KEGG: rec:RHECIAT_CH0004142 probable transcriptional regulator protein, ArsR family YP_002283132.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0004143 oxidoreductase protein YP_002283133.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; KEGG: rec:RHECIAT_CH0004144 redox-sensitive transcriptional regulator-activator protein YP_002283134.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03864 nitrate/sulfonate/bicarbonate ABC transporter permease YP_002283135.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03865 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein YP_002283136.1 PFAM: NMT1/THI5 like domain protein; KEGG: ret:RHE_CH03866 nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein YP_002283137.1 PFAM: acyltransferase 3; KEGG: rec:RHECIAT_CH0004148 acyltransferase protein YP_002283138.1 PFAM: sugar transferase; KEGG: ret:RHE_CH03868 exopolysaccharide production protein YP_002283139.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002283140.1 KEGG: cak:Caul_4736 hypothetical protein YP_002283141.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002283142.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002283143.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002283144.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex YP_002283145.1 KEGG: ret:RHE_CH03874 hypothetical protein YP_002283146.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002283147.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_CH0004157 probable dihydrodipicolinate synthase protein YP_002283148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004159 acetyltransferase protein, GNAT family YP_002283149.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rec:RHECIAT_CH0004160 acyltransferase protein YP_002283150.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002283151.1 PFAM: GumN family protein; KEGG: rec:RHECIAT_CH0004162 hypothetical protein YP_002283152.1 PFAM: cytochrome B561; KEGG: rec:RHECIAT_CH0004163 probable cytochrome b561 protein YP_002283153.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: ret:RHE_PE00095 hypothetical protein YP_002283154.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PE00096 galactonate dehydratase protein YP_002283155.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: ret:RHE_PE00097 probable sugar ABC transporter ATP-binding protein YP_002283156.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_PE00098 probable sugar ABC transporter permease YP_002283157.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mlo:mlr2327 permease of sugar ABC transporter YP_002283158.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00100 probable sugar ABC transporter substrate-binding protein YP_002283159.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PE00101 probable transcriptional regulator protein, GntR family YP_002283160.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: mlo:mll2323 hypothetical protein YP_002283161.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: ret:RHE_PE00103 mandelate racemase/muconate lactonizing enzyme protein YP_002283162.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: mlo:mll2320 hypothetical protein YP_002283163.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002283164.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: ret:RHE_CH03883 amino acid efflux protein, LysE family YP_002283165.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: ret:RHE_CH03884 oxidoreductase protein YP_002283166.1 KEGG: rec:RHECIAT_CH0004166 hypothetical protein YP_002283167.1 KEGG: ret:RHE_CH03886 hypothetical protein YP_002283168.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_002283169.1 PFAM: YCII-related; KEGG: rec:RHECIAT_CH0004169 hypothetical protein YP_002283170.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002283171.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002283172.1 KEGG: rec:RHECIAT_CH0004172 hypothetical protein YP_002283173.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002283174.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_002283175.1 PFAM: AFG1-family ATPase; KEGG: rec:RHECIAT_CH0004175 ATP-binding protein YP_002283176.1 PFAM: outer membrane lipoprotein omp19; KEGG: rec:RHECIAT_CH0004176 outer membrane lipoprotein YP_002283177.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_002283179.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002283180.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rec:RHECIAT_CH0004180 succinate dehydrogenase protein, membrane anchor subunit YP_002283181.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rec:RHECIAT_CH0004181 succinate dehydrogenase protein, cytochrome b subunit YP_002283182.1 KEGG: rec:RHECIAT_CH0004182 hypothetical protein YP_002283183.1 KEGG: rec:RHECIAT_CH0004183 methyltransferase protein YP_002283184.1 PFAM: protein of unknown function DUF55; KEGG: rec:RHECIAT_CH0004184 hypothetical protein YP_002283185.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_002283186.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002283187.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002283188.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002283189.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane YP_002283190.1 KEGG: rec:RHECIAT_CH0004190 hypothetical protein YP_002283191.1 PFAM: HemY domain protein; KEGG: rec:RHECIAT_CH0004191 hypothetical conserved membrane protein YP_002283192.1 PFAM: protein of unknown function DUF1332; KEGG: rec:RHECIAT_CH0004192 hypothetical protein YP_002283193.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_002283194.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0004194 permease YP_002283195.1 PFAM: protein of unknown function YGGT; KEGG: rec:RHECIAT_CH0004195 hypothetical conserved membrane protein YP_002283196.1 PFAM: protein of unknown function DUF167; KEGG: rec:RHECIAT_CH0004196 hypothetical protein YP_002283197.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002283198.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004198 acetyltransferase protein YP_002283199.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: rec:RHECIAT_CH0004199 GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A) protein YP_002283200.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: rec:RHECIAT_CH0004200 peptidyl-dipeptidase protein YP_002283201.1 KEGG: ret:RHE_CH03917 hypothetical protein YP_002283202.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0004202 amino acid efflux protein YP_002283203.1 KEGG: smd:Smed_5570 transmembrane protein YP_002283204.1 PFAM: NUDIX hydrolase; KEGG: rec:RHECIAT_CH0004203 hydrolase MutT/NUDIX family protein YP_002283205.1 KEGG: rec:RHECIAT_CH0004204 hypothetical protein YP_002283206.1 PFAM: adenylosuccinate synthetase; KEGG: rec:RHECIAT_CH0004205 adenylosuccinate synthase protein YP_002283207.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002283208.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rec:RHECIAT_CH0004208 probable oxidoreductase protein YP_002283209.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0004209 amino acid efflux protein, LysE family YP_002283210.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03927 ABC transporter ATP-binding protein YP_002283211.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0004211 sugar ABC transporter permease YP_002283212.1 PFAM: protein of unknown function DUF534; KEGG: rec:RHECIAT_CH0004212 ABC transporter substrate-binding protein YP_002283213.1 TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: rec:RHECIAT_CH0004213 hypothetical protein YP_002283214.1 KEGG: ret:RHE_CH03931 hypothetical protein YP_002283215.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_CH0004215 probable RNA polymerase sigma factor protein (sigma-70), ECF family YP_002283216.1 PFAM: protein of unknown function DUF1232; KEGG: rec:RHECIAT_CH0004216 hypothetical protein YP_002283217.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_002283218.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: rec:RHECIAT_CH0004219 2'-5' RNA ligase protein YP_002283219.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rec:RHECIAT_CH0004220 probable acyl-CoA thioesterase YP_002283220.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004221 ABC transporter ATP-binding protein (involved in lysophospholipase L1 biosynthesis) YP_002283221.1 PFAM: protein of unknown function DUF214; KEGG: ret:RHE_CH03939 ABC transporter permease (involved in lysophospholipase L1 biosynthesis) YP_002283222.1 PFAM: protein of unknown function UPF0005; KEGG: ret:RHE_CH03940 hypothetical protein YP_002283223.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH03941 phosphinothricin N-acetyltransferase (antibiotic resistance) protein YP_002283224.1 KEGG: rec:RHECIAT_CH0004225 hypothetical protein YP_002283225.1 PFAM: protein of unknown function DUF1223; KEGG: ret:RHE_CH03943 hypothetical protein YP_002283226.1 Catalyzes the conversion of citrate to isocitrate YP_002283227.1 ATP-binding protein; required for proper cytochrome C maturation YP_002283228.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: ret:RHE_CH03947 heme ABC transporter permease (involved in cytochrome-c biogenesis) YP_002283229.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; KEGG: ret:RHE_CH03948 heme ABC transporter permease (involved in cytochrome-c biogenesis) YP_002283230.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: rec:RHECIAT_CH0004231 probable heme transporter (involved in cytochrome C biogenesis) YP_002283231.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: rec:RHECIAT_CH0004232 thiol disulfide interchange protein (involved in cytochrome C biogenesis) YP_002283232.1 KEGG: rec:RHECIAT_CH0004233 hypothetical protein YP_002283233.1 Involved in cell division; probably involved in intracellular septation YP_002283234.1 KEGG: rec:RHECIAT_CH0004235 cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_002283235.1 KEGG: ret:RHE_CH03954 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_002283236.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002283237.1 KEGG: rec:RHECIAT_CH0004238 hypothetical protein YP_002283238.1 KEGG: rec:RHECIAT_CH0004239 signal recognition particle GTP-binding protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_002283239.1 catalyzes the interconversion of chorismate to prephenate YP_002283240.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002283241.1 Essential for efficient processing of 16S rRNA YP_002283242.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002283243.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002283244.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rec:RHECIAT_CH0004245 amino acid ABC transporter substrate-binding protein YP_002283245.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0004246 amino acid ABC transporter permease YP_002283246.1 KEGG: atu:Atu8028 hypothetical protein YP_002283247.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_002283248.1 KEGG: rec:RHECIAT_CH0004248 transporter YP_002283249.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0004249 probable 2,5-didehydrogluconate reductase protein YP_002283250.1 KEGG: ret:RHE_CH03967 hypothetical protein YP_002283251.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ret:RHE_CH03968 two-component response regulator protein YP_002283252.1 PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_CH03969 cAMP-dependent kinase protein YP_002283253.1 KEGG: mxa:MXAN_4193 hypothetical protein YP_002283254.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0004253 exodeoxyribonuclease III protein YP_002283255.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rec:RHECIAT_CH0004254 outer membrane lipoproteins carrier protein YP_002283256.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004255 cell division protein YP_002283257.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rec:RHECIAT_CH0004256 ammonium transporter YP_002283258.1 PFAM: nitrogen regulatory protein P-II; KEGG: rec:RHECIAT_CH0004257 nitrogen regulatory protein P-II YP_002283259.1 KEGG: rec:RHECIAT_CH0004258 acyl-CoA thioesterase II protein; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase YP_002283260.1 TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0004259 probable 2-octaprenyl-6-methoxyphenyl hydroxylase protein YP_002283261.1 PFAM: protein of unknown function DUF343; KEGG: rec:RHECIAT_CH0004260 hypothetical protein YP_002283262.1 PFAM: peptidase S16; KEGG: ret:RHE_CH03978 ATP-dependent protease La 2 protein YP_002283263.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: ret:RHE_CH03979 thioredoxin protein YP_002283264.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rec:RHECIAT_CH0004263 hypothetical protein YP_002283265.1 KEGG: azc:AZC_3857 hypothetical protein YP_002283266.1 PFAM: MlrC domain protein; Microcystin LR degradation protein MlrC-like; KEGG: ret:RHE_CH04060 hypothetical protein YP_002283267.1 PFAM: gamma-glutamyltranspeptidase; KEGG: atc:AGR_L_319 gamma-glutamyltranspeptidase YP_002283268.1 KEGG: rec:RHECIAT_CH0004347 hypothetical protein YP_002283269.1 PFAM: ABC transporter; transporter OB domain protein; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004346 iron(III) ABC transporter ATP-binding protein YP_002283270.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH04057 iron(III) ABC transporter permease protein YP_002283271.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH04056 iron(III) ABC transporter substrate-binding protein YP_002283272.1 PFAM: aldehyde dehydrogenase; KEGG: ret:RHE_CH04055 probable aldehyde dehydrogenase protein YP_002283273.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_CH0004342 probable oxidoreductase protein YP_002283274.1 PFAM: protein of unknown function DUF1338; KEGG: rec:RHECIAT_CH0004341 hypothetical protein YP_002283275.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0004340 probable transcriptional regulator protein, LysR family YP_002283276.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rec:RHECIAT_CH0004339 transcriptional regulator protein YP_002283277.1 PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH04050 cellobiosyl-diphosphoprenyl alpha-mannosyltransferase protein YP_002283278.1 PFAM: polysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0004337 teichuronic acid biosynthesis protein YP_002283279.1 PFAM: glycosyl transferase group 1; KEGG: ret:RHE_CH04048 glycosyltransferase protein YP_002283280.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: rec:RHECIAT_CH0004335 beta-mannosidase protein YP_002283281.1 PFAM: Domain of unknown function DUF1839; KEGG: rec:RHECIAT_CH0004334 serine--tRNA ligase protein YP_002283282.1 KEGG: ret:RHE_CH04045 hypothetical protein YP_002283283.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ret:RHE_CH04044 acyl-CoA dehydrogenase protein YP_002283284.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_002283285.1 KEGG: ret:RHE_CH04042 L-lysine 2,3-aminomutase protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein YP_002283286.1 PFAM: tRNA synthetase class II (D K and N); KEGG: ret:RHE_CH04041 lysyl-tRNA synthetase protein YP_002283287.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002283288.1 PFAM: sugar isomerase (SIS); KEGG: ret:RHE_CH04038 hypothetical protein YP_002283289.1 KEGG: rec:RHECIAT_CH0004326 N-acetylglucosamine-6-phosphate deacetylase protein; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_002283290.1 PFAM: sugar isomerase (SIS); KEGG: ret:RHE_CH04036 glucosamine--fructose-6-phosphate aminotransferase protein YP_002283291.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rec:RHECIAT_CH0004324 probable transcriptional regulator protein YP_002283292.1 PFAM: aldose 1-epimerase; KEGG: rec:RHECIAT_CH0004323 aldose-1-epimerase protein YP_002283293.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002283294.1 PFAM: SbmABacA family protein; ABC transporter; KEGG: ret:RHE_CH04032 probable ABC transporter, ATP-binding and permease domains YP_002283295.1 KEGG: mlo:mll8431 hypothetical protein YP_002283296.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004320 ABC transporter ATP-binding protein YP_002283297.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: rec:RHECIAT_CH0004319 thiamine pyrophosphokinase protein YP_002283298.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0004318 probable transcriptional regulator protein, MarR family YP_002283299.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH04028 transporter permease YP_002283300.1 PFAM: peptidase M48 Ste24p; KEGG: rec:RHECIAT_CH0004316 metalloprotease protein YP_002283301.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production YP_002283302.1 PFAM: transcription factor CarD; KEGG: ret:RHE_CH04025 probable transcriptional regulator protein, CarD family YP_002283303.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rec:RHECIAT_CH0004312 ferredoxin III protein YP_002283304.1 PFAM: RNA-binding S4 domain protein; KEGG: ret:RHE_CH04023 heat shock protein (ribosome-associated) YP_002283305.1 PFAM: helicase; KEGG: rec:RHECIAT_CH0004310 ATP-dependent DNA helicase protein YP_002283306.1 KEGG: dar:Daro_2051 hypothetical protein YP_002283307.1 PFAM: 17 kDa surface antigen; KEGG: ret:RHE_CH04021 hypothetical protein YP_002283309.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0004307 acetoacetyl-CoA reductase protein YP_002283310.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002283311.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: rec:RHECIAT_CH0004305 carbon flux regulator protein YP_002283312.1 KEGG: rec:RHECIAT_CH0004304 hypothetical protein YP_002283313.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002283314.1 PFAM: glutathione S-transferase domain; KEGG: ret:RHE_CH04014 glutathione S-transferase protein YP_002283315.1 PFAM: Domain of unknown function DUF1868; KEGG: rec:RHECIAT_CH0004301 hypothetical protein YP_002283316.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_002283317.1 PFAM: polyprenyl synthetase; KEGG: rec:RHECIAT_CH0004299 geranyltranstransferase protein YP_002283318.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002283319.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002283320.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH04008 transporter permease YP_002283321.1 PFAM: regulatory protein DeoR; KEGG: rec:RHECIAT_CH0004295 probable transcriptional regulator protein, DeoR family YP_002283322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mll7828 hypothetical protein YP_002283323.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_CH04006 probable amino acid ABC transporter substrate-binding protein YP_002283324.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH04005 probable amino acid ABC transporter permease protein YP_002283325.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004292 probable amino acid ABC transporter ATP-binding protein YP_002283326.1 PFAM: NADPH-dependent FMN reductase; KEGG: rec:RHECIAT_CH0004291 reductase protein YP_002283327.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_002283328.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: ret:RHE_CH04001 probable transcriptional regulator protein, LuxR family YP_002283329.1 responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease; Cgt; ChvA; NdvA YP_002283330.1 PFAM: glucose-6-phosphate isomerase; Cupin 2 conserved barrel domain protein; KEGG: pab:PAB1199 glucose-6-phosphate isomerase YP_002283331.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0004286 glyoxalase protein YP_002283332.1 KEGG: rec:RHECIAT_CH0004285 protein required for succinylation of osmoregulated periplasmic glucans YP_002283333.1 PFAM: carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: rec:RHECIAT_CH0004284 beta-1,2-glucan production associated transmembrane protein YP_002283334.1 KEGG: rec:RHECIAT_CH0004283 hypothetical protein YP_002283335.1 KEGG: rec:RHECIAT_CH0004282 hypothetical protein YP_002283336.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH03996 dipeptide ABC transporter ATP-binding protein YP_002283337.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004280 dipeptide ABC transporter ATP-binding protein YP_002283338.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0004279 dipeptide ABC transporter permease YP_002283339.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH03993 dipeptide ABC transporter permease protein YP_002283340.1 PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_CH03992 dipeptide ABC transporter substrate-binding protein YP_002283341.1 PFAM: peptidase M19 renal dipeptidase; KEGG: ret:RHE_CH03991 membrane dipeptidase protein YP_002283342.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0004275 probable sugar ABC transporter permease YP_002283343.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004274 probable sugar ABC transporter ATP-binding protein YP_002283344.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0004273 rhizopine ABC transporter substrate-binding protein YP_002283345.1 KEGG: rec:RHECIAT_CH0004272 hypothetical protein YP_002283346.1 PFAM: sulfatase; KEGG: rec:RHECIAT_CH0004271 phosphonate monoester hydrolase protein YP_002283347.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rec:RHECIAT_CH0004270 UDP-glucose 4-epimerase protein YP_002283348.1 KEGG: rec:RHECIAT_CH0004269 hypothetical protein YP_002283349.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004268 acetyltransferase protein YP_002283350.1 KEGG: rec:RHECIAT_CH0004267 hypothetical protein YP_002283351.1 KEGG: rec:RHECIAT_CH0004266 hypothetical protein YP_002283352.1 KEGG: rec:RHECIAT_CH0004265 hypothetical protein YP_002283353.1 KEGG: nha:Nham_3356 hypothetical protein YP_002283354.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rde:RD1_3446 DNA-binding protein YP_002283355.1 KEGG: lbl:LBL_0729 hypothetical protein YP_002283356.1 PFAM: protein of unknown function DUF955; KEGG: lbl:LBL_0728 hypothetical protein YP_002283357.1 PFAM: ribosomal protein L21; KEGG: rec:RHECIAT_CH0004351 50S ribosomal protein L21 YP_002283358.1 involved in the peptidyltransferase reaction during translation YP_002283359.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004353 acetyltransferase protein YP_002283360.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0004354 acetyltransferase protein YP_002283361.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_CH0004355 phosphatase protein YP_002283362.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002283363.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002283364.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002283365.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002283366.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0004361 molybdenum ABC transporter substrate-binding protein YP_002283367.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_002283368.1 KEGG: ret:RHE_CH04073 molybdenum ABC transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter ATPase; PFAM: ABC transporter; TOBE domain protein; SMART: ATPase AAA YP_002283369.1 PFAM: regulatory protein LysR; KEGG: ret:RHE_CH04074 molybdenum-binding transcriptional regulator-repressor protein (molybdenum transport associatedprotein) YP_002283370.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rec:RHECIAT_CH0004365 hypothetical protein YP_002283371.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002283372.1 PFAM: peptidase M23; KEGG: rec:RHECIAT_CH0004367 metalloendopeptidase protein YP_002283373.1 KEGG: rec:RHECIAT_CH0004368 C-terminal processing peptidase protein; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_002283374.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: rec:RHECIAT_CH0004369 hypothetical protein YP_002283375.1 hydrolyzes diadenosine polyphosphate YP_002283376.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: ret:RHE_CH04081 bacterioferritin protein YP_002283377.1 KEGG: rec:RHECIAT_CH0004372 hypothetical protein YP_002283378.1 KEGG: ret:RHE_CH04083 DNA polymerase III subunit alpha protein; TIGRFAM: DNA polymerase III subunit alpha; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III subunit alpha YP_002283379.1 KEGG: ret:RHE_CH04084 nucleotidyltransferase protein YP_002283380.1 KEGG: ret:RHE_CH04085 hypothetical protein YP_002283381.1 PFAM: protein of unknown function DUF1025; KEGG: ret:RHE_CH04086 hypothetical protein YP_002283382.1 KEGG: ret:RHE_CH04087 hypothetical protein YP_002283383.1 PFAM: HpcH/HpaI aldolase; KEGG: rec:RHECIAT_CH0004378 citrate lyase protein subunit beta YP_002283384.1 KEGG: rec:RHECIAT_CH0004379 hypothetical protein YP_002283385.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: ret:RHE_CH04090 hypothetical protein YP_002283386.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002283387.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rec:RHECIAT_CH0004382 probable threonine ammonia-lyase protein YP_002283388.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002283389.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: rec:RHECIAT_CH0004384 phosphatase protein YP_002283390.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0004385 transporter permease protein YP_002283391.1 PFAM: protein of unknown function DUF214; KEGG: rec:RHECIAT_CH0004386 hypothetical conserved membrane protein YP_002283392.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0004387 ABC transporter ATP-binding protein YP_002283393.1 KEGG: ret:RHE_CH04098 hypothetical protein YP_002283394.1 PFAM: alkaline phosphatase; KEGG: rec:RHECIAT_CH0004389 alkaline phosphatase protein YP_002283396.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002283397.1 TIGRFAM: lytic murein transglycosylase; KEGG: rec:RHECIAT_CH0004392 membrane-bound lytic murein transglycosylase protein YP_002283398.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rec:RHECIAT_CH0004393 sensory box GGDEF family protein YP_002283399.1 PFAM: carbonic anhydrase; KEGG: ret:RHE_CH04103 carbonic anhydrase protein YP_002283400.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_002283401.1 PFAM: NAD-glutamate dehydrogenase; KEGG: ret:RHE_CH04105 NAD-specific glutamate dehydrogenase protein YP_002283402.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH04106 hypothetical conserved membrane protein YP_002283403.1 involved in de novo purine biosynthesis YP_002283404.1 PFAM: Heparinase II/III; KEGG: rec:RHECIAT_CH0004400 hypothetical protein YP_002283405.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rec:RHECIAT_CH0004401 probable RNA methyltransferase-sun protein YP_002283406.1 metalloprotease YP_002283407.1 PFAM: protein of unknown function DUF1674; KEGG: ret:RHE_CH04111 hypothetical protein YP_002283408.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002283409.1 PFAM: protein of unknown function DUF1013; KEGG: rec:RHECIAT_CH0004405 hypothetical protein YP_002283410.1 PFAM: flagellin domain protein; KEGG: rec:RHECIAT_CH0004407 probable propionate-CoA ligase protein YP_002283411.1 PFAM: alanine racemase domain protein; KEGG: ret:RHE_CH04115 hypothetical protein YP_002283412.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002283413.1 KEGG: ret:RHE_CH04117 hypothetical protein YP_002283414.1 required for the assembly and function of the DNAX complex which are required for the assembly of the subunit beta onto primed DNA YP_002283415.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rec:RHECIAT_CH0004412 chromosome partitioning protein B YP_002283416.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_CH04120 chromosome partitioning protein A YP_002283417.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002283418.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002283419.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002283420.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002283421.1 PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH04125 hypothetical protein YP_002283422.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002283423.1 PFAM: protein of unknown function DUF299; KEGG: rec:RHECIAT_CH0000002 hypothetical protein YP_002283424.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002283425.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002283426.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002283427.1 3'-5' exonuclease of DNA polymerase III YP_002283428.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_002283429.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_002283430.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: ret:RHE_CH00008 translocase transmembrane protein YP_002283431.1 PFAM: MltA domain protein; 3D domain protein; KEGG: rec:RHECIAT_CH0000010 membrane-bound lytic murein transglycosylase protein YP_002283432.1 PFAM: Smr protein/MutS2; KEGG: rec:RHECIAT_CH0000011 DNA repair protein, Smr/MutS family YP_002283433.1 PFAM: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0000012 transcriptional regulator protein YP_002283434.1 negatively supercoils closed circular double-stranded DNA YP_002283435.1 PFAM: nitroreductase; KEGG: rec:RHECIAT_CH0000014 probable oxidoreductase protein YP_002283436.1 KEGG: rec:RHECIAT_CH0000015 hypothetical protein YP_002283437.1 PFAM: fumarylacetoacetate hydrolase; KEGG: rec:RHECIAT_CH0000017 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase YP_002283438.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rec:RHECIAT_CH0000018 probable intracellular PHB depolymerase protein YP_002283439.1 KEGG: ret:RHE_CH00018 hypothetical protein YP_002283440.1 PFAM: protein of unknown function DUF45; KEGG: rec:RHECIAT_CH0000020 zinc metallopeptidase protein YP_002283441.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_002283442.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002283443.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002283444.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002283445.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rec:RHECIAT_CH0000025 FolC YP_002283446.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: rec:RHECIAT_CH0000026 thioredoxin protein YP_002283447.1 TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: ret:RHE_CH00026 probable nuclease/helicase protein, ATP dependent YP_002283448.1 TIGRFAM: double-strand break repair protein AddB; KEGG: ret:RHE_CH00027 hypothetical protein YP_002283449.1 PFAM: nucleotidyl transferase; KEGG: ret:RHE_CH00028 probable nucleotidyltransferase protein YP_002283450.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: rec:RHECIAT_CH0000030 hypothetical protein YP_002283451.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: rec:RHECIAT_CH0000031 probable two-component sensor histidine kinase protein YP_002283452.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002283453.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: rec:RHECIAT_CH0000033 phosphocarrier protein HPr protein YP_002283454.1 PFAM: PTS system fructose subfamily IIA component; KEGG: rec:RHECIAT_CH0000034 probable protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of the phosphotransferase system) YP_002283455.1 KEGG: rec:RHECIAT_CH0000035 hypothetical protein YP_002283456.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH00035 two-component sensor histidine kinase protein YP_002283457.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rec:RHECIAT_CH0000037 two-component response regulator protein YP_002283458.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_002283459.1 PFAM: class I peptide chain release factor; KEGG: ret:RHE_CH00038 hypothetical protein YP_002283460.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: rec:RHECIAT_CH0000041 alkylated DNA repair protein YP_002283461.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_002283462.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002283463.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002283464.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002283465.1 KEGG: rec:RHECIAT_CH0000046 hypothetical protein YP_002283466.1 KEGG: rec:RHECIAT_CH0000047 hypothetical protein YP_002283467.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002283468.1 KEGG: ret:RHE_CH00046 hypothetical protein YP_002283469.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002283470.1 heat shock protein involved in degradation of misfolded proteins YP_002283471.1 heat shock protein involved in degradation of misfolded proteins YP_002283472.1 PFAM: protein of unknown function DUF1402; KEGG: ret:RHE_CH00050 hypothetical protein YP_002283473.1 PFAM: cytochrome P450; KEGG: rec:RHECIAT_CH0000054 probable cytochrome P450 protein YP_002283474.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_002283475.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ret:RHE_CH00053 hypothetical protein YP_002283476.1 PFAM: protein of unknown function DUF1052; KEGG: ret:RHE_CH00054 hypothetical protein YP_002283477.1 PFAM: response regulator receiver; KEGG: ret:RHE_CH00055 two-component response regulator protein YP_002283478.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ret:RHE_CH00056 two-component sensor histidine kinase protein YP_002283479.1 KEGG: rec:RHECIAT_CH0000060 ATP-dependent helicase protein; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase; helicase-associated domain protein; DEAD/DEAH box helicase; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases YP_002283480.1 KEGG: rec:RHECIAT_CH0000069 hypothetical protein YP_002283481.1 SMART: hypothetical protein; KEGG: atc:AGR_L_3032 hypothetical protein YP_002283482.1 KEGG: atc:AGR_L_2996 hypothetical protein YP_002283483.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: atc:AGR_L_2998 alkaline proteinase secretion protein YP_002283484.1 KEGG: atc:AGR_L_3000 ABC protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_002283485.1 KEGG: atc:AGR_L_3002 hypothetical protein YP_002283486.1 KEGG: atc:AGR_L_3004 hypothetical protein YP_002283487.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: ret:RHE_CH00066 probable transcriptional regulator protein, LuxR family YP_002283488.1 KEGG: rec:RHECIAT_CH0000071 hypothetical protein YP_002283489.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: ret:RHE_CH00068 probable dTDP-glucose 4,6-dehydratase protein YP_002283490.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: rec:RHECIAT_CH0000073 UDP-glucose 4-epimerase protein YP_002283491.1 KEGG: rec:RHECIAT_CH0000074 probable cellulose synthase protein YP_002283492.1 PFAM: protein of unknown function DUF995; KEGG: rec:RHECIAT_CH0000075 hypothetical protein YP_002283493.1 KEGG: rec:RHECIAT_CH0000076 polysaccharide degradation protein YP_002283494.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0000077 sugar ABC transporter substrate-binding protein YP_002283495.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0000078 probable transcriptional regulator protein, LacI family YP_002283496.1 KEGG: rec:RHECIAT_CH0000079 hypothetical protein YP_002283497.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_CH00076 probable D-2-hydroxyacid dehydrogenase protein YP_002283498.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0000081 oxidoreducatse protein YP_002283499.1 PFAM: xylose isomerase; KEGG: rec:RHECIAT_CH0000082 xylose isomerase domain protein YP_002283500.1 PFAM: protein of unknown function DUF993; KEGG: ret:RHE_CH00079 hypothetical protein YP_002283501.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_CH0000084 oxidoreductase protein YP_002283502.1 PFAM: regulatory protein TetR; KEGG: ret:RHE_CH00081 probable transcriptional regulator protein, TetR family YP_002283503.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH00082 probable sugar ABC transporter substrate-binding protein YP_002283504.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH00083 probable sugar ABC transporter permease YP_002283505.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000088 probable sugar ABC transporter permease YP_002283506.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_CH0000089 oxidoreductase protein YP_002283507.1 PFAM: ABC transporter; TOBE domain protein; transporter OB domain protein; SMART: ATPase AAA; KEGG: ret:RHE_CH00086 probable sugar ABC transporter ATP binding protein YP_002283508.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: rec:RHECIAT_CH0000091 ethanolamine kinase protein YP_002283509.1 PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: rec:RHECIAT_CH0000092 probable sarcosine dehydrogenase protein YP_002283510.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: rec:RHECIAT_CH0000093 D-mannonate oxidoreductase protein YP_002283511.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism YP_002283512.1 PFAM: SlyX family protein; KEGG: rec:RHECIAT_CH0000095 hypothetical protein YP_002283513.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rec:RHECIAT_CH0000096 succinate-semialdehyde dehydrogenase (NAD(P)(+)) protein YP_002283514.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_002283515.1 PFAM: regulatory protein MerR; helix-turn-helix domain protein; cupin; KEGG: rec:RHECIAT_CH0000098 probable transcriptional regulator protein, MerR family YP_002283516.1 PFAM: 3'-5' exonuclease; KEGG: ret:RHE_CH00095 RNAse D protein YP_002283517.1 KEGG: rec:RHECIAT_CH0000100 hypothetical protein YP_002283518.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002283519.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002283520.1 PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH00099 hypothetical protein YP_002283521.1 KEGG: rec:RHECIAT_CH0000106 hypothetical protein YP_002283522.1 KEGG: rec:RHECIAT_CH0000107 fusion protein: hypothetical conserved protein and adenylate cyclase protein YP_002283523.1 PFAM: adenylate cyclase; KEGG: rec:RHECIAT_CH0000107 fusion protein: hypothetical conserved protein and adenylate cyclase protein YP_002283524.1 KEGG: rec:RHECIAT_CH0000108 hypothetical protein YP_002283525.1 KEGG: rec:RHECIAT_CH0000109 hypothetical protein YP_002283526.1 KEGG: rec:RHECIAT_CH0000110 hypothetical protein YP_002283527.1 KEGG: rec:RHECIAT_CH0000111 hypothetical protein YP_002283528.1 PFAM: secretion protein HlyD; KEGG: rec:RHECIAT_CH0000112 probable protein secretion protein, HlyD family YP_002283529.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter; KEGG: rec:RHECIAT_CH0000113 sulfate transporter YP_002283530.1 PFAM: protein of unknown function DUF344; KEGG: rec:RHECIAT_CH0000114 polyphosphate kinase protein YP_002283531.1 PFAM: protein of unknown function UPF0118; KEGG: rec:RHECIAT_CH0000115 hypothetical protein YP_002283532.1 KEGG: rec:RHECIAT_CH0000116 hypothetical protein YP_002283533.1 PFAM: ion transport 2 domain protein; KEGG: rec:RHECIAT_CH0000117 hypothetical protein YP_002283534.1 TIGRFAM: calcium/proton antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: rec:RHECIAT_CH0000118 probable Na+/H+ antiporter protein YP_002283535.1 KEGG: rec:RHECIAT_CH0000132 hypothetical protein YP_002283536.1 KEGG: rec:RHECIAT_CH0000133 hypothetical protein YP_002283537.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rec:RHECIAT_CH0000136 mechanosensitive ion channel protein YP_002283538.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rec:RHECIAT_CH0000137 hypothetical protein YP_002283539.1 PFAM: protein of unknown function DUF1275; KEGG: ret:RHE_CH00102 hypothetical protein YP_002283540.1 PFAM: protein of unknown function DUF218; KEGG: ret:RHE_CH00103 hypothetical protein YP_002283541.1 KEGG: rec:RHECIAT_CH0000140 hypothetical protein YP_002283542.1 PFAM: protein of unknown function UPF0126; KEGG: ret:RHE_CH00105 hypothetical conserved membrane protein YP_002283543.1 PFAM: ferric-uptake regulator; KEGG: rec:RHECIAT_CH0000142 iron transcriptional regulator protein YP_002283544.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_002283545.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002283546.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002283547.1 PFAM: YcfA family protein; KEGG: btr:Btr_0959 hypothetical protein YP_002283548.1 PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: bhe:BH03510 DNA-binding protein YP_002283549.1 PFAM: methyltransferase small; KEGG: rec:RHECIAT_CH0000146 probable rRNA (guanine-N(2)-)-methyltransferase protein YP_002283550.1 KEGG: ret:RHE_CH00111 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_002283551.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002283552.1 PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_CH0000150 hydrolase protein YP_002283553.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002283554.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002283555.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002283556.1 PFAM: protein of unknown function DUF448; KEGG: ret:RHE_CH00117 hypothetical protein YP_002283557.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002283558.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002283559.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: ret:RHE_CH00120 ABC transporter permease YP_002283560.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000158 acetyltransferase protein YP_002283561.1 TIGRFAM: lytic murein transglycosylase; KEGG: rec:RHECIAT_CH0000159 probable transglycosylase protein YP_002283562.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002283563.1 PFAM: MOSC domain containing protein; KEGG: ret:RHE_CH00124 hypothetical protein YP_002283564.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000162 hypothetical protein YP_002283565.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002283566.1 PFAM: histidine triad (HIT) protein; KEGG: ret:RHE_CH00127 hypothetical protein YP_002283567.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: ret:RHE_CH00128 NTP pyrophosphohydrolase protein, MutT/NUDIX family (responsible for removing an oxidativelydamaged form of guanine from DNA and the nucleotide pool) YP_002283568.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0000166 transcriptional regulator protein YP_002283569.1 KEGG: rec:RHECIAT_CH0000167 hypothetical protein YP_002283570.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_CH0000168 glyoxalase/dioxygenase protein YP_002283571.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002283572.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_002283573.1 PFAM: cytochrome C class I; KEGG: rec:RHECIAT_CH0000171 cytochrome C protein YP_002283574.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0000172 probable ABC transporter permease YP_002283575.1 PFAM: PfkB domain protein; KEGG: ret:RHE_CH00135 probable sugar kinase protein YP_002283576.1 PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ret:RHE_CH00136 hypothetical protein YP_002283577.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_CH00138 probable D-2-hydroxyacid dehydrogenase protein YP_002283578.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000176 acetyltransferase protein YP_002283579.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_002283580.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002283581.1 PFAM: helix-turn-helix domain protein; KEGG: rec:RHECIAT_CH0000180 transcriptional regulator protein, Cro/CI family YP_002283582.1 KEGG: ret:RHE_CH00143 hypothetical protein YP_002283583.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002283584.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002283585.1 KEGG: rec:RHECIAT_CH0000184 probable penicillin binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_002283586.1 KEGG: rec:RHECIAT_CH0000185 hypothetical protein YP_002283587.1 PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: ret:RHE_CH00147 hypothetical protein YP_002283588.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ret:RHE_CH00148 hypothetical protein YP_002283589.1 KEGG: rec:RHECIAT_CH0000188 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002283590.1 PFAM: regulatory protein MarR; KEGG: rec:RHECIAT_CH0000189 probable transcriptional regulator protein, MarR family YP_002283591.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002283592.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: rec:RHECIAT_CH0000191 cell division protein YP_002283593.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000192 probable spermidine/putrescine ABC transporter permease YP_002283594.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000193 probable spermidine/putrescine ABC transporter permease YP_002283595.1 KEGG: rec:RHECIAT_CH0000194 probable spermidine/putrescine ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase; PFAM: ABC transporter related; transporter OB domain protein; SMART: ATPase AAA YP_002283596.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0000195 probable spermidine/putrescine ABC transporter substrate-binding protein YP_002283597.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0000196 transcriptional regulator protein, LysR family YP_002283598.1 PFAM: protein of unknown function UPF0157; KEGG: rec:RHECIAT_CH0000197 hypothetical protein YP_002283599.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: rec:RHECIAT_CH0000198 ATP-binding phosphonate metabolism protein (ribose 1,5-bisphosphate phosphokinase) YP_002283600.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; amidohydrolase; KEGG: rec:RHECIAT_CH0000199 phosphonate metabolism protein YP_002283601.1 TIGRFAM: phosphonate metabolism protein; PFAM: protein of unknown function DUF1045; KEGG: rec:RHECIAT_CH0000200 hypothetical protein YP_002283602.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000201 probable phosphonate ABC transporter permease YP_002283603.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000202 probable phosphonate ABC transporter permease YP_002283604.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate binding protein; KEGG: rec:RHECIAT_CH0000203 probable phosphonate ABC transporter substrate-binding protein YP_002283605.1 KEGG: ret:RHE_CH00160 probable phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA YP_002283606.1 TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0000205 acetyltransferase protein YP_002283607.1 KEGG: rec:RHECIAT_CH0000206 probable phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter; SMART: ATPase AAA YP_002283608.1 KEGG: rec:RHECIAT_CH0000207 probable phosphonate ABC transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter; SMART: ATPase AAA YP_002283609.1 PFAM: phosphonate metabolism PhnJ; KEGG: ret:RHE_CH00164 C-P (carbon-phosphorus) lyase component protein YP_002283610.1 PFAM: phosphonate metabolism; KEGG: rec:RHECIAT_CH0000209 phosphonate metabolism protein YP_002283611.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: rec:RHECIAT_CH0000210 phosphonate metabolism protein, C-P (carbon-phosphorus) lyase component YP_002283612.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: rec:RHECIAT_CH0000211 phosphonate metabolism protein YP_002283613.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: rec:RHECIAT_CH0000212 probable transcriptional regulator protein, GntR family YP_002283614.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002283615.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002283616.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: rec:RHECIAT_CH0000215 multidrug ABC transporter ATPase and permease YP_002283617.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_002283618.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002283619.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_002283620.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0000219 probable peptide ABC transporter substrate-binding protein YP_002283621.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000220 probable peptide ABC transporter permease YP_002283622.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000221 peptide ABC transporter permease YP_002283623.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH00178 probable peptide ABC transporter ATP binding protein YP_002283624.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rec:RHECIAT_CH0000223 2-hydroxyacid dehydrogenase protein YP_002283625.1 KEGG: ret:RHE_CH00180 hypothetical protein YP_002283626.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_002283627.1 KEGG: rec:RHECIAT_CH0000226 hypothetical protein YP_002283628.1 KEGG: rec:RHECIAT_CH0000227 hypothetical protein YP_002283630.1 PFAM: integrase family protein; KEGG: atc:AGR_L_2007 hypothetical protein YP_002283631.1 KEGG: rpa:RPA4540 hypothetical protein YP_002283632.1 KEGG: eli:ELI_11595 hypothetical protein YP_002283633.1 KEGG: rsq:Rsph17025_1902 hypothetical protein YP_002283634.1 KEGG: psb:Psyr_1560 gas vesicle protein YP_002283635.1 KEGG: hch:HCH_10031 hypothetical protein YP_002283637.1 KEGG: mlo:mll4405 hypothetical protein YP_002283640.1 KEGG: atc:AGR_L_2002 hypothetical protein YP_002283641.1 PFAM: nuclease (SNase domain protein); KEGG: rec:RHECIAT_CH0003335 hypothetical protein YP_002283642.1 KEGG: atc:AGR_pAT_46 hypothetical protein YP_002283643.1 KEGG: smd:Smed_1637 hypothetical protein YP_002283644.1 KEGG: rpt:Rpal_3332 hypothetical protein YP_002283645.1 KEGG: azc:AZC_0851 hypothetical protein YP_002283647.1 KEGG: atu:Atu3847 hypothetical protein YP_002283649.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: atc:AGR_L_1981 hypothetical protein YP_002283650.1 KEGG: atc:AGR_L_1980 hypothetical protein YP_002283652.1 KEGG: rpa:RPA4544 hypothetical protein YP_002283653.1 KEGG: bid:Bind_2671 hypothetical protein YP_002283656.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: mav:MAV_0272 hypothetical protein YP_002283657.1 KEGG: ret:RHE_CH00186 hypothetical protein YP_002283658.1 PFAM: basic membrane lipoprotein; KEGG: rec:RHECIAT_CH0000232 probable outer membrane lipoprotein YP_002283659.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH00188 probable sugar ABC transporter ATP-binding protein YP_002283660.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_CH0000234 probable sugar ABC transporter permease YP_002283661.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH00190 probable sugar ABC transporter permease YP_002283662.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002283663.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002283664.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002283665.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_002283666.1 KEGG: ret:RHE_CH00195 hypothetical protein YP_002283667.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002283668.1 catalyzes the formation of inosine from adenosine YP_002283669.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002283670.1 KEGG: ret:RHE_CH00199 hypothetical protein YP_002283671.1 PFAM: TadE family protein; KEGG: ret:RHE_CH00200 hypothetical protein YP_002283672.1 KEGG: rec:RHECIAT_CH0000246 pilus subunit transmembrane protein YP_002283673.1 PFAM: Flp/Fap pilin component; KEGG: rec:RHECIAT_CH0000247 pilus subunit protein YP_002283674.1 PFAM: peptidase A24A prepilin type IV; KEGG: ret:RHE_CH00203 prepilin peptidase protein YP_002283675.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rec:RHECIAT_CH0000249 pilus assembly protein YP_002283676.1 PFAM: type II and III secretion system protein; transporter; KEGG: rec:RHECIAT_CH0000250 pilus assembly secretion protein YP_002283677.1 pilus (Caulobacter type) biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: pilus biogenesis CpaD family protein; KEGG: rec:RHECIAT_CH0000251 pilus assembly protein YP_002283678.1 KEGG: rec:RHECIAT_CH0000252 pilus assembly, two-component response regulator protein YP_002283679.1 PFAM: type II secretion system protein E; KEGG: ret:RHE_CH00208 pilus assembly secretion ATP-binding protein YP_002283680.1 PFAM: type II secretion system protein; KEGG: rec:RHECIAT_CH0000254 probable pilus assembly protein YP_002283681.1 PFAM: type II secretion system protein; KEGG: rec:RHECIAT_CH0000255 pilus component protein YP_002283682.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: ret:RHE_CH00211 probable amino acid efflux protein, LysE family YP_002283683.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0000257 pilus assembly protein (contains TPR repeats) YP_002283684.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ret:RHE_CH00213 probable leucine aminopeptidase protein YP_002283685.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH00216 probable transcriptional regulator protein, MarR family YP_002283686.1 PFAM: NLP/P60 protein; KEGG: ret:RHE_CH00217 endopeptidase-related protein YP_002283687.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_CH00219 probable dipeptide ABC transporter permease YP_002283688.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_CH0000263 probable ABC transporter permease YP_002283689.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_CH0000264 probable ABC transporter substrate-binding protein YP_002283690.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_862 hypothetical protein YP_002283691.1 PFAM: peptidase S58 DmpA; KEGG: rec:RHECIAT_CH0000265 peptidase protein YP_002283692.1 KEGG: rec:RHECIAT_CH0000266 hypothetical protein YP_002283693.1 PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; KEGG: ret:RHE_CH00224 hypothetical protein YP_002283694.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_002283695.1 PFAM: acyltransferase 3; KEGG: rec:RHECIAT_CH0000269 exopolysaccharide production protein YP_002283696.1 KEGG: rec:RHECIAT_CH0000270 probable polysaccharide biosynthesis protein YP_002283697.1 PFAM: glycoside hydrolase family 5; KEGG: rec:RHECIAT_CH0000271 probable carboxymethyl cellulase protein YP_002283698.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rec:RHECIAT_CH0000272 probable succinoglycan biosynthesis transporter YP_002283699.1 KEGG: ret:RHE_CH00230 hypothetical protein YP_002283700.1 PFAM: Cephalosporin hydroxylase; KEGG: azc:AZC_3471 cephalosporin hydroxylase YP_002283701.1 PFAM: aminotransferase class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: syn:slr1615 perosamine synthetase YP_002283702.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: amr:AM1_2778 acetyltransferase RfbO, CysE/LacA/LpxA/NodL family YP_002283703.1 PFAM: glycosyl transferase family 2; KEGG: azc:AZC_3476 glycosyltransferase YP_002283704.1 KEGG: azc:AZC_3477 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_002283705.1 PFAM: methyltransferase type 11; methyltransferase type 12; methyltransferase domain protein; C-methyltransferase; KEGG: azc:AZC_3478 NDP-hexose 3-C-methyltransferase protein YP_002283706.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: azc:AZC_3479 CDP-glucose 4,6-dehydratase YP_002283707.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: azc:AZC_3480 glucose-1-phosphate cytidylyltransferase YP_002283708.1 PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_PC0000860 hypothetical protein YP_002283709.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00820 mannosyltransferase YP_002283710.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: glo:Glov_3377 methyltransferase type 11 YP_002283711.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: glo:Glov_3378 DegT/DnrJ/EryC1/StrS aminotransferase YP_002283712.1 PFAM: cupin; KEGG: mag:amb0141 hypothetical protein YP_002283713.1 PFAM: methyltransferase type 11; methyltransferase type 12; methyltransferase domain protein; C-methyltransferase; KEGG: sme:SMb21061 NDP-hexose 3-C-methyltransferase protein YP_002283715.1 KEGG: syf:Synpcc7942_0648 hypothetical protein YP_002283717.1 KEGG: plt:Plut_1899 abortive infection protein, internal deletion YP_002283718.1 KEGG: mag:amb1930 hypothetical protein YP_002283720.1 PFAM: Resolvase domain; KEGG: azc:AZC_1528 resolvase family protein YP_002283724.1 KEGG: aas:Aasi_0826 hypothetical protein YP_002283727.1 PFAM: NUMOD4 domain protein; KEGG: bvi:Bcep1808_1165 NUMOD4 domain protein YP_002283728.1 KEGG: rec:RHECIAT_CH0001159 transmembrane protein YP_002283730.1 KEGG: aby:ABAYE3789 hypothetical protein YP_002283732.1 PFAM: integrase family protein; KEGG: met:M446_1478 integrase family protein YP_002283733.1 KEGG: rec:RHECIAT_CH0000276 hypothetical protein YP_002283734.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: rec:RHECIAT_CH0000277 hypothetical protein YP_002283735.1 PFAM: glutamine amidotransferase class-I; KEGG: ret:RHE_CH00245 glutamine amidotransferase protein YP_002283736.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0000279 maltose O-acetyltransferase protein YP_002283737.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rec:RHECIAT_CH0000280 glutathione-dependent formaldehyde-activating protein YP_002283738.1 KEGG: rec:RHECIAT_CH0000281 hypothetical protein YP_002283739.1 KEGG: rec:RHECIAT_CH0000282 hypothetical protein YP_002283740.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002283741.1 PFAM: TENA/THI-4 domain protein; KEGG: rec:RHECIAT_CH0000284 probable transcriptional activator regulator protein, TenA family YP_002283742.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_CH0000285 probable transcriptional regulator protein, LacI family YP_002283743.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0000286 probable acetyltransferase protein YP_002283744.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: rec:RHECIAT_CH0000287 haloacid dehydrogenase hydrolase protein YP_002283745.1 PFAM: histone deacetylase superfamily; KEGG: rec:RHECIAT_CH0000288 acetylpolyamine aminohydrolase protein YP_002283746.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002283747.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0000290 probable permease YP_002283748.1 KEGG: rec:RHECIAT_CH0000291 hypothetical protein YP_002283749.1 PFAM: rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: rec:RHECIAT_CH0000292 hypothetical protein YP_002283750.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rec:RHECIAT_CH0000293 transglutaminase-like cysteine peptidase protein YP_002283751.1 KEGG: ret:RHE_CH00259 hydrolase protein YP_002283752.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002283753.1 PFAM: ribosomal protein L35; KEGG: rec:RHECIAT_CH0000297 50S ribosomal protein L35 YP_002283754.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002283755.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002283756.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002283757.1 KEGG: rec:RHECIAT_CH0000301 hypothetical protein YP_002283758.1 PFAM: aldo/keto reductase; KEGG: rec:RHECIAT_CH0000302 probable oxidoreductase protein, aldo/keto reductase family YP_002283759.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0000303 probable transcriptional regulator protein, LysR family YP_002283760.1 PFAM: protein of unknown function DUF892; KEGG: rec:RHECIAT_CH0000304 hypothetical protein YP_002283761.1 KEGG: ret:RHE_CH00269 hypothetical protein YP_002283762.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH00270 probable acetyltransferase protein YP_002283763.1 PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00271 probable oxidoreductase protein, aldo/keto reductase family YP_002283764.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: rec:RHECIAT_CH0000308 probable oxidoreductase protein YP_002283765.1 PFAM: GtrA family protein; KEGG: rec:RHECIAT_CH0000309 hypothetical conserved membrane protein YP_002283766.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0000310 probable glycosyltransferase protein YP_002283767.1 KEGG: rec:RHECIAT_CH0000311 hypothetical protein YP_002283768.1 KEGG: rec:RHECIAT_CH0000312 hypothetical protein YP_002283769.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002283770.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH00278 probable transcriptional regulator protein, MarR family YP_002283771.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rec:RHECIAT_CH0000316 transporter permease protein YP_002283772.1 PFAM: peptidase M29 aminopeptidase II; KEGG: ret:RHE_CH00280 probable aminopeptidase protein YP_002283773.1 PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0000318 glutathione S-transferase protein YP_002283774.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH00282 probable transcriptional regulator protein, MarR family YP_002283775.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rec:RHECIAT_CH0000320 hypothetical protein YP_002283776.1 PFAM: arsenate reductase; KEGG: ret:RHE_CH00284 probable arsenate reductase protein YP_002283777.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: rec:RHECIAT_CH0000322 arginine catabolism protein YP_002283778.1 KEGG: pol:Bpro_2442 2',5' RNA ligase YP_002283779.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0000324 short-chain dehydrogenase/oxidoreductase protein YP_002283780.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH00289 short chain dehydrogenase YP_002283781.1 KEGG: rec:RHECIAT_CH0000326 hypothetical protein YP_002283782.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0000327 probable transcriptional regulator protein, LysR family YP_002283783.1 PFAM: isochorismatase hydrolase; KEGG: ret:RHE_PF00312 probable isochorismatase protein YP_002283784.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: ret:RHE_PF00313 probable transcriptional regulator protein, AraC family YP_002283785.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rec:RHECIAT_CH0000328 probable transcriptional regulator protein, AraC family YP_002283786.1 PFAM: PEBP family protein; KEGG: rec:RHECIAT_CH0000329 phosphatidylethanolamine-binding protein YP_002283787.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: xcb:XC_0070 hypothetical protein YP_002283788.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cak:Caul_1057 glyoxalase/bleomycin resistance protein/dioxygenase YP_002283789.1 PFAM: hypothetical protein; KEGG: swi:Swit_0146 helix-turn-helix, type 11 domain protein YP_002283790.1 PFAM: protein of unknown function DUF1778; KEGG: mes:Meso_4578 hypothetical protein YP_002283791.1 KEGG: ppd:Ppro_3838 hypothetical protein YP_002283792.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002283793.1 Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002283794.1 PFAM: thioesterase; KEGG: rec:RHECIAT_CH0000336 phenylacetic acid degradation protein YP_002283795.1 KEGG: rec:RHECIAT_CH0000337 hypothetical protein YP_002283796.1 PFAM: conserved hypothetical protein; KEGG: rec:RHECIAT_CH0000338 hypothetical protein YP_002283797.1 KEGG: rec:RHECIAT_CH0000339 hypothetical protein YP_002283798.1 PFAM: protein of unknown function DUF1111; KEGG: rec:RHECIAT_CH0000340 hypothetical protein YP_002283799.1 KEGG: rec:RHECIAT_CH0000341 hypothetical protein YP_002283800.1 PFAM: Fmu (Sun) domain protein; KEGG: rec:RHECIAT_CH0000342 tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein YP_002283801.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: rec:RHECIAT_CH0000343 probable lipoprotein A protein YP_002283802.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: rec:RHECIAT_CH0000345 nucleoside-diphosphate-sugar epimerase protein YP_002283803.1 PFAM: hypothetical protein; KEGG: rec:RHECIAT_CH0000346 iron-sulfur cluster binding protein YP_002283804.1 PFAM: glutathione S-transferase domain; KEGG: rec:RHECIAT_CH0000347 glutathione S-transferase protein YP_002283805.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002283806.1 KEGG: rec:RHECIAT_CH0000349 hypothetical protein YP_002283807.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: ret:RHE_CH00312 probable NADH dehydrogenase/NADH dehydrogenase (ubiquinone) protein YP_002283808.1 PFAM: protein of unknown function DUF1330; KEGG: rec:RHECIAT_CH0000351 hypothetical protein YP_002283809.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002283810.1 PFAM: phosphoglycerate mutase; KEGG: rec:RHECIAT_CH0000353 phosphoglycerate mutase protein YP_002283811.1 KEGG: rec:RHECIAT_CH0000354 phospholipid N-methyltransferase protein YP_002283812.1 PFAM: protein of unknown function DUF72; KEGG: rec:RHECIAT_CH0000355 hypothetical protein YP_002283813.1 binds the polymerase to DNA and acts as a sliding clamp YP_002283814.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rec:RHECIAT_CH0000357 methyltransferase protein YP_002283815.1 PFAM: protein of unknown function UPF0102; KEGG: rec:RHECIAT_CH0000358 hypothetical protein YP_002283816.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: rec:RHECIAT_CH0000359 hypothetical protein YP_002283817.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0000686 probable transcriptional regulator protein, LacI family YP_002283818.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rec:RHECIAT_CH0000687 ribose ABC transporter substrate-binding protein YP_002283819.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH00613 ribose ABC transporter ATP-binding protein YP_002283820.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH00614 ribose ABC transporter permease YP_002283821.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_002283822.1 KEGG: ret:RHE_CH00323 probable Mg-chelatase protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase AAA; SMART: AAA ATPase YP_002283823.1 KEGG: ret:RHE_CH00324 hypothetical protein YP_002283824.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: rec:RHECIAT_CH0000364 cysteine synthase protein YP_002283825.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rec:RHECIAT_CH0000365 probable amino acid efflux protein, LysE family YP_002283826.1 PFAM: ferritin; KEGG: azc:AZC_4121 low temperature-induced protein YP_002283827.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_CH00327 transporter permease YP_002283828.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ret:RHE_CH00328 probable transcriptional regulator protein, AsnC family YP_002283829.1 KEGG: rec:RHECIAT_CH0000368 acetyltransferase protein YP_002283830.1 catalyzes the formation of dUMP from dUTP YP_002283831.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: rec:RHECIAT_CH0000370 peptide chain release factor 3 protein YP_002283832.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc01570 transcription regulator protein YP_002283833.1 PFAM: glutathione S-transferase domain; KEGG: sml:Smlt1073 glutathione S-transferase YP_002283834.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ret:RHE_CH00337 hypothetical protein YP_002283835.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: rec:RHECIAT_CH0000375 carboxypeptidase-related protein YP_002283836.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0000376 probable cyanate transporter YP_002283837.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_CH0000377 probable transcriptional regulator protein, GntR family YP_002283838.1 PFAM: glutamine amidotransferase class-II; KEGG: rec:RHECIAT_CH0000378 glutamine amidotransferase protein YP_002283839.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002283840.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0000380 probable oxidoreductase protein YP_002283841.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0000381 probable transcriptional regulator protein, LysR family YP_002283842.1 PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_CH0000382 transporter permease YP_002283843.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH00346 biphenyl-2,3-diol 1,2-dioxygenase protein YP_002283844.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002283845.1 KEGG: rec:RHECIAT_CH0000386 hypothetical protein YP_002283846.1 PFAM: protein of unknown function DUF917; KEGG: rec:RHECIAT_CH0000387 hypothetical protein YP_002283847.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002283848.1 PFAM: amidohydrolase; KEGG: rec:RHECIAT_CH0000389 allantoinase protein YP_002283849.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: rec:RHECIAT_CH0000390 histidine ammonia-lyase protein YP_002283850.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: rec:RHECIAT_CH0000391 ubiquinone biosynthesis protein YP_002283851.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002283852.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002283853.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002283854.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002283855.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMc00265 periplasmic binding protein YP_002283856.1 KEGG: pla:Plav_1665 alpha/beta hydrolase fold-3 domain protein YP_002283857.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc00264 oxidoreductase protein YP_002283858.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; KEGG: smd:Smed_1440 regulatory protein IclR YP_002283859.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002283860.1 activates fatty acids by binding to coenzyme A YP_002283861.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: smd:Smed_1437 short-chain dehydrogenase/reductase SDR YP_002283862.1 KEGG: smd:Smed_1436 hypothetical protein YP_002283863.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase type 2 domain; KEGG: pde:Pden_4480 acyl-CoA dehydrogenase domain protein YP_002283864.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pde:Pden_4481 enoyl-CoA hydratase/isomerase YP_002283865.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rsh:Rsph17029_1787 3-hydroxyisobutyrate dehydrogenase YP_002283866.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pde:Pden_2905 enoyl-CoA hydratase/isomerase YP_002283867.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_2807 short-chain dehydrogenase/reductase SDR YP_002283868.1 KEGG: bbr:BB1032 hypothetical protein YP_002283869.1 PFAM: protein of unknown function DUF419; KEGG: rso:RSc2592 hypothetical protein YP_002283870.1 KEGG: ret:RHE_PA00095 insertion sequence transposase protein YP_002283871.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: smd:Smed_2069 LysR family transcriptional regulator YP_002283872.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO3505 secreted substrate binding protein YP_002283873.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cbl:CLK_3476 binding-protein-dependent transport systems inner membrane component YP_002283874.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tle:Tlet_1153 binding-protein-dependent transport systems inner membrane component YP_002283875.1 PFAM: sulfatase; KEGG: bam:Bamb_3271 sulfatase YP_002283876.1 PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: oan:Oant_2943 ABC transporter YP_002283877.1 PFAM: protein of unknown function DUF323; KEGG: art:Arth_1714 protein of unknown function DUF323 YP_002283878.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bid:Bind_3456 LysR family transcriptional regulator YP_002283879.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bph:Bphy_4848 AMP-dependent synthetase and ligase YP_002283880.1 PFAM: extracellular ligand-binding receptor; KEGG: rde:RD1_3591 branched-chain amino acid ABC transporter periplasmic binding protein YP_002283881.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rde:RD1_3587 branched-chain amino acid ABC transporter ATP-binding protein YP_002283882.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gvi:glr2898 probable ABC transporter ATP-binding protein YP_002283883.1 PFAM: inner-membrane translocator; KEGG: rde:RD1_3589 branched-chain amino acid ABC transporter permease YP_002283884.1 PFAM: inner-membrane translocator; KEGG: rde:RD1_3590 branched-chain amino acid ABC transporter permease YP_002283885.1 PFAM: amidohydrolase 2; KEGG: bja:blr7937 hypothetical protein YP_002283886.1 PFAM: extracellular solute-binding protein family 5; KEGG: pfl:PFL_5627 peptide ABC transporter periplasmic peptide-binding protein YP_002283887.1 PFAM: HpcH/HpaI aldolase; KEGG: xau:Xaut_1348 HpcH/HpaI aldolase YP_002283888.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: bid:Bind_2627 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002283889.1 PFAM: NADPH-dependent FMN reductase; KEGG: mes:Meso_1852 NADPH-dependent FMN reductase YP_002283890.1 PFAM: flavin reductase domain protein FMN-binding; LysR substrate-binding; KEGG: reh:H16_A1233 transcriptional regulator, LysR-family YP_002283891.1 PFAM: monooxygenase; KEGG: pst:PSPTO_3199 bacterial luciferase family protein YP_002283892.1 PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_3359 aldehyde dehydrogenase family protein YP_002283893.1 PFAM: glutathione S-transferase domain; KEGG: bra:BRADO4808 glutathione S-transferase YP_002283894.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: csc:Csac_0407 alcohol dehydrogenase YP_002283895.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: bac:BamMC406_2576 general substrate transporter YP_002283896.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_002283897.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: sal:Sala_0374 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_002283898.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bra:BRADO4811 transcriptional regulatory protein, LysR family YP_002283899.1 KEGG: ctc:CTC02559 citrate lyase alpha chain; TIGRFAM: citrate lyase subunit alpha; PFAM: citrate lyase subunit alpha YP_002283900.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bch:Bcen2424_6173 L-carnitine dehydratase/bile acid-inducible protein F YP_002283901.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_PF00414 probable transcriptional regulator protein, AraC family YP_002283902.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ret:RHE_PC00153 methyl-accepting chemotaxis protein YP_002283903.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bph:Bphy_4910 alcohol dehydrogenase zinc-binding domain protein YP_002283904.1 KEGG: rsq:Rsph17025_3940 hypothetical protein; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_002283905.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: eli:ELI_00980 enoyl-CoA hydratase/isomerase YP_002283906.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dar:Daro_0710 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR YP_002283907.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa41510 acyl-CoA synthetase YP_002283908.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_2655 major facilitator superfamily MFS_1 YP_002283909.1 PFAM: regulatory protein TetR; KEGG: rxy:Rxyl_1747 TetR family transcriptional regulator YP_002283910.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bcs:BCAN_A0833 methylmalonyl-CoA epimerase YP_002283911.1 MDM; functions in conversion of succinate to propionate YP_002283912.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: atc:AGR_L_580GM propionyl-CoA carboxylase alpha chain YP_002283914.1 PFAM: carboxyl transferase; KEGG: atu:Atu3586 propionyl-CoA carboxylase YP_002283915.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: smd:Smed_4240 protein of unknown function DUF955 YP_002283916.1 KEGG: rec:RHECIAT_PC0000719 hypothetical protein YP_002283917.1 KEGG: rec:RHECIAT_PB0000030 hypothetical protein YP_002283918.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cau:Caur_3850 GCN5-related N-acetyltransferase YP_002283919.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bcm:Bcenmc03_3780 transcriptional regulator, LysR family YP_002283920.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: aav:Aave_1495 glycine betaine transporter periplasmic subunit YP_002283921.1 KEGG: rsp:RSP_4000 ABC glycine betaine/L-proline transporter ATPase; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_002283922.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cko:CKO_04028 hypothetical protein YP_002283923.1 TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: ppw:PputW619_0096 choline-sulfatase YP_002283924.1 KEGG: rsp:RSP_1624 hypothetical protein YP_002283925.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rsp:RSP_1622 DNA-binding protein YP_002283926.1 PFAM: response regulator receiver; KEGG: smd:Smed_6520 response regulator receiver protein YP_002283927.1 KEGG: nmu:Nmul_A0543 response regulator receiver domain protein (CheY-like) YP_002283928.1 KEGG: smd:Smed_6522 hypothetical protein YP_002283930.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: bid:Bind_3775 prevent-host-death family protein YP_002283931.1 PFAM: PilT protein domain protein; KEGG: smd:Smed_6500 PilT protein domain protein YP_002283932.1 PFAM: integrase family protein; KEGG: atc:AGR_pAT_22 hypothetical protein YP_002283933.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; cobyrinic acid ac-diamide synthase; KEGG: oan:Oant_4711 cobyrinic acid ac-diamide synthase YP_002283934.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; KEGG: oan:Oant_4710 ParB-like partition protein YP_002283935.1 PFAM: replication protein C; KEGG: ret:RHE_PB00165 plasmid replication protein RepCb YP_002283936.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA2681 probable transcriptional regulator YP_002283937.1 KEGG: dar:Daro_3104 hypothetical protein YP_002283938.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2346 quinone oxidoreductase YP_002283939.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bac:BamMC406_3362 short-chain dehydrogenase/reductase SDR YP_002283940.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: swi:Swit_1674 GntR family transcriptional regulator YP_002283941.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rec:RHECIAT_CH0001008 short-chain dehydrogenase protein YP_002283942.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: mlo:mll7332 ABC transporter binding protein YP_002283943.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mlo:mll7329 ABC transporter permease YP_002283944.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mlo:mll7330 ABC transporter ATP-binding protein YP_002283945.1 PFAM: isochorismatase hydrolase; KEGG: bce:BC3243 isochorismatase YP_002283946.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: btl:BALH_2938 hydrogenase expression/formation protein YP_002283947.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein YP_002283948.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: btl:BALH_2937 hydrogenase maturation protein YP_002283949.1 PFAM: helix-turn-helix HxlR type; KEGG: smd:Smed_1971 HxlR family transcriptional regulator YP_002283950.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: sme:SMc01405 hypothetical protein YP_002283951.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: met:M446_4455 alcohol dehydrogenase zinc-binding domain protein YP_002283952.1 KEGG: ret:RHE_PA00139 hypothetical protein YP_002283953.1 PFAM: protein of unknown function DUF1419; KEGG: oan:Oant_4735 protein of unknown function DUF1419 YP_002283954.1 KEGG: xau:Xaut_4973 helicase YP_002283956.1 PFAM: ParB domain protein nuclease; KEGG: rec:RHECIAT_PC0000917 plasmid stabilization protein YP_002283957.1 KEGG: rec:RHECIAT_PC0000916 hypothetical protein YP_002283958.1 KEGG: rec:RHECIAT_PC0000915 hypothetical protein YP_002283959.1 KEGG: xau:Xaut_3028 hypothetical protein YP_002283960.1 KEGG: mes:Meso_4155 methylase/helicase YP_002283961.1 KEGG: sme:SMa0911 hypothetical protein YP_002283962.1 KEGG: rec:RHECIAT_PC0000894 hypothetical protein YP_002283963.1 TIGRFAM: prevent-host-death family protein; KEGG: xau:Xaut_5007 prevent-host-death family protein YP_002283964.1 KEGG: ret:RHE_PC00065 hypothetical protein YP_002283965.1 PFAM: protein of unknown function DUF736; KEGG: rec:RHECIAT_PC0000891 hypothetical protein YP_002283966.1 KEGG: mes:Meso_4160 hypothetical protein YP_002283967.1 PFAM: histone family protein DNA-binding protein; KEGG: oan:Oant_4761 histone family protein DNA-binding protein YP_002283968.1 KEGG: ret:RHE_PA00152 hypothetical protein YP_002283969.1 KEGG: ret:RHE_PA00153 hypothetical protein YP_002283971.1 PFAM: lytic transglycosylase catalytic; KEGG: nha:Nham_4448 lytic transglycosylase, catalytic YP_002283972.1 PFAM: Conjugal transfer protein TrbC; KEGG: sit:TM1040_3821 VirB2 type IV secretion YP_002283973.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: nha:Nham_4446 type IV secretory pathway, VirB3-like YP_002283974.1 TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: nha:Nham_4445 type IV secretion/conjugal transfer ATPase, VirB4 family YP_002283975.1 PFAM: lytic transglycosylase catalytic; KEGG: smd:Smed_6404 lytic transglycosylase catalytic YP_002283976.1 KEGG: mlo:mlr9253 conjugal transfer protein YP_002283978.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: smd:Smed_6401 TrbL/VirB6 plasmid conjugal transfer protein YP_002283979.1 PFAM: VirB8 family protein; KEGG: smd:Smed_6400 VirB8 family protein YP_002283980.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: nha:Nham_4439 conjugal transfer protein TrbG/VirB9/CagX YP_002283981.1 PFAM: conjugation TrbI family protein; KEGG: mlo:mlr9259 conjugal transfer protein YP_002283982.1 TIGRFAM: ATPase P; PFAM: type II secretion system protein E; KEGG: nha:Nham_4437 type II secretion system protein E YP_002283983.1 PFAM: TRAG family protein; KEGG: smd:Smed_6396 TraG family protein YP_002283985.1 KEGG: swi:Swit_5360 hypothetical protein YP_002283987.1 KEGG: mta:Moth_1827 transcriptional regulator, XRE family YP_002283988.1 KEGG: smd:Smed_6413 hypothetical protein YP_002283990.1 PFAM: nuclease (SNase domain protein); KEGG: mlo:mlr9236 hypothetical protein YP_002283991.1 KEGG: smd:Smed_6410 succinoglycan biosynthesis protein ExoI-like protein YP_002283992.1 KEGG: oan:Oant_4567 succinoglycan biosynthesis protein ExoI-like protein YP_002283994.1 KEGG: nha:Nham_4525 cobyrinic acid a,c-diamide synthase YP_002283997.1 KEGG: nha:Nham_4527 hypothetical protein YP_002283998.1 KEGG: atc:AGR_L_1734 hypothetical protein YP_002284000.1 KEGG: smd:Smed_6417 hypothetical protein YP_002284001.1 KEGG: smd:Smed_6418 transmembrane protein YP_002284002.1 PFAM: integrase; KEGG: ret:RHE_PA00137 insertion sequence transposase protein YP_002284003.1 PFAM: integrase; KEGG: ret:RHE_PD00190 insertion sequence transposase protein YP_002284004.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_1584 alcohol dehydrogenase, zinc-containing YP_002284005.1 PFAM: regulatory protein TetR; KEGG: reh:H16_A0613 transcriptional regulator, TetR/AcrR-family YP_002284006.1 KEGG: eca:ECA1594 hypothetical protein YP_002284007.1 PFAM: transposase IS4 family protein; KEGG: smd:Smed_5939 hypothetical protein YP_002284008.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_1127 GntR family transcriptional regulator YP_002284009.1 KEGG: bbt:BBta_0536 ABC transporter YP_002284010.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: azc:AZC_2645 ABC transporter ATP-binding protein YP_002284011.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bbt:BBta_0538 ABC transporter (permease protein) YP_002284012.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_002284013.1 KEGG: mes:Meso_4463 hypothetical protein YP_002284014.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMa1720 LysR family transcriptional regulator YP_002284015.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: tle:Tlet_1148 alpha-N-arabinofuranosidase YP_002284016.1 PFAM: inner-membrane translocator; KEGG: sma:SAV6654 sugar ABC transporter permease YP_002284017.1 PFAM: inner-membrane translocator; KEGG: sma:SAV6655 ABC transporter permease YP_002284018.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV6656 sugar ABC transporter ATP-binding protein YP_002284019.1 PFAM: basic membrane lipoprotein; KEGG: kra:Krad_2121 basic membrane lipoprotein YP_002284020.1 PFAM: endoribonuclease L-PSP; KEGG: sil:SPO2000 endoribonuclease L-PSP family protein YP_002284021.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rec:RHECIAT_PC0000649 probable amino acid ABC transporter permease YP_002284022.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: oan:Oant_4585 polar amino acid ABC transporter inner membrane subunit YP_002284023.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rec:RHECIAT_PC0000651 probable amino acid ABC transporter ATP-binding protein YP_002284024.1 PFAM: extracellular solute-binding protein family 3; KEGG: oan:Oant_4588 extracellular solute-binding protein family 3 YP_002284025.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: oan:Oant_4581 5-oxoprolinase (ATP-hydrolyzing) YP_002284026.1 PFAM: hydantoinase B/oxoprolinase; KEGG: oan:Oant_4582 5-oxoprolinase (ATP-hydrolyzing) YP_002284027.1 PFAM: xylose isomerase; KEGG: oan:Oant_4583 xylose isomerase domain protein TIM barrel YP_002284028.1 PFAM: UBA/THIF-type NAD/FAD binding protein; shikimate/quinate 5-dehydrogenase; shikimate dehydrogenase substrate binding domain protein; KEGG: xau:Xaut_1616 shikimate dehydrogenase substrate binding domain protein YP_002284029.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: oan:Oant_4596 4-oxalocrotonate tautomerase YP_002284030.1 PFAM: FAD dependent oxidoreductase; KEGG: rec:RHECIAT_PC0000646 D-amino acid dehydrogenase protein YP_002284031.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bmu:Bmul_5269 GntR family transcriptional regulator YP_002284032.1 PFAM: class II aldolase/adducin family protein; KEGG: bja:blr4379 hypothetical protein YP_002284033.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: bph:Bphy_4863 hydantoin racemase-like protein YP_002284034.1 PFAM: major facilitator superfamily MFS_1; KEGG: lch:Lcho_4332 major facilitator superfamily MFS_1 YP_002284035.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sil:SPO1594 mandelate racemase/muconate lactonizing enzyme YP_002284036.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_4231 short-chain dehydrogenase/reductase SDR YP_002284037.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: rpd:RPD_2368 5-oxoprolinase (ATP-hydrolyzing) YP_002284038.1 PFAM: hydantoinase B/oxoprolinase; KEGG: pfl:PFL_2733 hydantoin utilization protein B YP_002284039.1 PFAM: extracellular solute-binding protein family 5; KEGG: pfl:PFL_5627 peptide ABC transporter periplasmic peptide-binding protein YP_002284040.1 PFAM: extracellular solute-binding protein family 5; KEGG: pfl:PFL_5627 peptide ABC transporter periplasmic peptide-binding protein YP_002284041.1 PFAM: MaoC domain protein dehydratase; KEGG: dar:Daro_1191 MaoC-like dehydratase YP_002284042.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bph:Bphy_4868 alcohol dehydrogenase zinc-binding domain protein YP_002284043.1 PFAM: extracellular solute-binding protein family 5; KEGG: jan:Jann_3816 twin-arginine translocation pathway signal YP_002284044.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rxy:Rxyl_2394 short-chain dehydrogenase/reductase SDR YP_002284045.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bsu:BSU15910 beta-ketoacyl-acyl carrier protein reductase YP_002284046.1 PFAM: amidase; KEGG: bph:Bphy_4842 amidase YP_002284047.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bph:Bphy_4840 AMP-dependent synthetase and ligase YP_002284048.1 PFAM: polysaccharide deacetylase; KEGG: bph:Bphy_4846 polysaccharide deacetylase YP_002284049.1 PFAM: endoribonuclease L-PSP; KEGG: bur:Bcep18194_B1118 endoribonuclease L-PSP YP_002284050.1 KEGG: bph:Bphy_4826 citrate synthase YP_002284051.1 PFAM: MaoC domain protein dehydratase; KEGG: bph:Bphy_4847 MaoC domain protein dehydratase YP_002284052.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: bph:Bphy_4830 electron transfer flavoprotein alpha/beta-subunit YP_002284053.1 PFAM: electron transfer flavoprotein subunit alpha; KEGG: bph:Bphy_4831 electron transfer flavoprotein subunit alpha YP_002284054.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bph:Bphy_4832 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002284055.1 PFAM: FAD dependent oxidoreductase; KEGG: bph:Bphy_4833 FAD dependent oxidoreductase YP_002284056.1 PFAM: regulatory protein TetR; KEGG: bph:Bphy_4824 TetR family transcriptional regulator YP_002284057.1 PFAM: nitroreductase; KEGG: bph:Bphy_4839 nitroreductase YP_002284058.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bph:Bphy_4845 short-chain dehydrogenase/reductase SDR YP_002284059.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bph:Bphy_4837 2-nitropropane dioxygenase NPD YP_002284060.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: ret:RHE_CH01308 electrotransfer ubiquinone oxidoreductase protein YP_002284061.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_002284062.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: smd:Smed_6245 succinic semialdehyde dehydrogenase YP_002284063.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: lpl:lp_0122 halo peroxidase YP_002284064.1 PFAM: nucleoside recognition domain protein; KEGG: dar:Daro_3104 hypothetical protein YP_002284065.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_1542 LysR family transcriptional regulator YP_002284066.1 KEGG: ret:RHE_PC00126 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase YP_002284067.1 PFAM: adenylate kinase; KEGG: mrd:Mrad2831_2197 adenylate kinase YP_002284068.1 KEGG: ret:RHE_PF00403 hypothetical protein YP_002284069.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; KEGG: ret:RHE_PF00404 electron-transport flavoprotein, alpha-subunit YP_002284070.1 PFAM: electron transfer flavoprotein alpha/beta-subunit; KEGG: rec:RHECIAT_PC0000587 electron transport flavoprotein subunit beta YP_002284071.1 PFAM: aldehyde dehydrogenase; KEGG: bph:Bphy_4836 aldehyde dehydrogenase YP_002284072.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: psb:Psyr_3605 trimethylamine-N-oxide reductase (cytochrome C) YP_002284073.1 PFAM: MaoC domain protein dehydratase; KEGG: bph:Bphy_4847 MaoC domain protein dehydratase YP_002284075.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bph:Bphy_4845 short-chain dehydrogenase/reductase SDR YP_002284076.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mxa:MXAN_2154 NADP oxidoreductase, coenzyme F420-dependent YP_002284078.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pde:Pden_3462 binding-protein-dependent transport systems inner membrane component YP_002284079.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rsh:Rsph17029_0532 binding-protein-dependent transporters inner membrane component YP_002284080.1 PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_1739 ABC polyamine/opine transporter periplasmic substrate-binding protein YP_002284081.1 KEGG: rsh:Rsph17029_0530 spermidine/putrescine ABC transporter ATPase; TIGRFAM: spermidine/putrescine ABC transporter ATPase; PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA YP_002284082.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: mmr:Mmar10_0268 enoyl-CoA hydratase/isomerase YP_002284083.1 PFAM: FAD linked oxidase; KEGG: azc:AZC_0253 FAD/FMN-containing dehydrogenase YP_002284084.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bph:Bphy_4868 alcohol dehydrogenase zinc-binding domain protein YP_002284085.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bph:Bphy_4867 glucose-methanol-choline oxidoreductase YP_002284086.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pfl:PFL_5624 peptide ABC transporter ATP-binding protein YP_002284087.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pfl:PFL_5625 peptide ABC transporter permease protein YP_002284088.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pde:Pden_5074 binding-protein-dependent transport systems inner membrane component YP_002284089.1 PFAM: protein of unknown function DUF982; KEGG: rec:RHECIAT_CH0002094 hypothetical protein YP_002284090.1 KEGG: ret:RHE_PD00322 probable insertion sequence transposase protein YP_002284091.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mmi:MMAR_2244 transcriptional regulatory protein (probably GntR-family) YP_002284092.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase YP_002284093.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: mjl:Mjls_3545 enoyl-CoA hydratase/isomerase YP_002284094.1 PFAM: polysaccharide deacetylase; KEGG: ses:SARI_04498 hypothetical protein YP_002284095.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: mkm:Mkms_1543 ferredoxin YP_002284096.1 PFAM: amidohydrolase 2; KEGG: bja:bll7907 hypothetical protein YP_002284097.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bbt:BBta_4263 hypothetical protein YP_002284098.1 PFAM: extracellular solute-binding protein family 3; KEGG: bph:Bphy_4862 extracellular solute-binding protein family 3 YP_002284099.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bph:Bphy_4861 polar amino acid ABC transporter inner membrane subunit YP_002284100.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ppu:PP_4750 amino acid ABC transporter permease YP_002284101.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ppu:PP_4751 amino acid ABC transporter ATP-binding protein YP_002284102.1 PFAM: amidase; KEGG: bph:Bphy_4842 amidase YP_002284103.1 PFAM: aldehyde dehydrogenase; KEGG: ret:RHE_PF00340 succinate semialdehyde dehydrogenase protein YP_002284104.1 PFAM: aminotransferase class-III; KEGG: bxe:Bxe_C0784 hypothetical protein YP_002284105.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_4765 AraC family transcriptional regulator YP_002284106.1 PFAM: dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: rec:RHECIAT_CH0002704 hypothetical conserved membrane protein YP_002284107.1 PFAM: carboxylesterase type B; KEGG: bph:Bphy_4876 carboxylesterase type B YP_002284108.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bur:Bcep18194_C6789 beta-hydroxyacid dehydrogenase YP_002284110.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: sme:SMc00266 transmembrane protein YP_002284111.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_002284112.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000210 probable sugar ABC transporter, permease protein YP_002284113.1 PFAM: inner-membrane translocator; KEGG: rec:RHECIAT_PC0000211 putative sugar ABC transporter, permease protein YP_002284114.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000212 probable sugar ABC transporter, ATP-binding protein YP_002284115.1 PFAM: Amidase; KEGG: ret:RHE_PB00103 putative amidase protein YP_002284116.1 PFAM: basic membrane lipoprotein; KEGG: ret:RHE_PB00102 putative lipoprotein periplasmic protein YP_002284117.1 KEGG: rec:RHECIAT_PC0000216 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein YP_002284118.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rec:RHECIAT_PC0000217 putative 1-acylglycerol-3-phosphate O-acyltransferase protein YP_002284119.1 PFAM: phosphatidate cytidylyltransferase; KEGG: rec:RHECIAT_PC0000218 phosphatidate cytidylyltransferase protein YP_002284120.1 KEGG: rec:RHECIAT_PC0000219 hypothetical protein YP_002284121.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rec:RHECIAT_PC0000220 probable molecular chaperone protein, DnaJ family YP_002284122.1 PFAM: UspA domain protein; KEGG: ret:RHE_PB00096 putative universal stress protein YP_002284123.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Phosphogluconate dehydrogenase, NAD-binding, putative-like; KEGG: rec:RHECIAT_PC0000222 putative NAD-binding phosphogluconate dehydrogenase-like protein YP_002284124.1 PFAM: plasmid stabilization system; KEGG: pla:Plav_0711 plasmid stabilization system YP_002284125.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: pde:Pden_3830 putative transcriptional regulators, CopG/Arc/MetJ family YP_002284126.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli YP_002284127.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000232 probable dipeptide ABC transporter, substrate-binding protein YP_002284128.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000233 probable dipeptide ABC transporter, ATP-binding protein YP_002284129.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00092 probable dipeptide ABC transporter, permease protein YP_002284130.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000235 probable dipeptide ABC transporter, permease protein YP_002284131.1 TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; KEGG: rec:RHECIAT_PC0000236 proline iminopeptidase protein YP_002284132.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: rec:RHECIAT_PC0000237 probable transcriptional regulator protein, LuxR family YP_002284133.1 KEGG: rec:RHECIAT_PC0000238 proline iminopeptidase protein; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold YP_002284134.1 PFAM: Acetamidase/Formamidase; KEGG: ret:RHE_PB00087 probable acetamidase/formamidase protein YP_002284135.1 KEGG: rec:RHECIAT_PC0000242 hypothetical protein YP_002284136.1 PFAM: metallophosphoesterase; KEGG: rec:RHECIAT_PC0000243 putative serine/threonine-specific phosphatase protein YP_002284137.1 PFAM: Integrase catalytic region; KEGG: ret:RHE_PA00137 putative insertion sequence transposase protein YP_002284138.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_3874 transcriptional regulator, GntR family YP_002284139.1 PFAM: dihydrodipicolinate synthetase; KEGG: bcs:BCAN_B0241 dihydrodipicolinate synthase YP_002284140.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: smd:Smed_3870 malate/L-lactate dehydrogenase YP_002284141.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: ret:RHE_PC00098 probable ribokinase protein YP_002284142.1 PFAM: RbsD or FucU transport; KEGG: ret:RHE_PC00099 fucose dissimilation pathway protein YP_002284143.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PC00100 probable transcriptional regulator protein, LacI family YP_002284144.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00101 probable sugar ABC transporter, permease protein YP_002284145.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00102 probable sugar ABC transporter, permease protein YP_002284146.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PC00103 probable sugar ABC transporter, substrate-binding protein YP_002284147.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PC00104 probable sugar ABC transporter, ATP-binding protein YP_002284148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbe:Cbei_2323 GCN5-related N-acetyltransferase YP_002284149.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002284150.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_4173 glycine oxidase ThiO YP_002284151.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_002284152.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002284153.1 PFAM: GAF domain protein; KEGG: mlo:mll2226 hypothetical protein YP_002284154.1 PFAM: protein of unknown function UPF0066; KEGG: bja:bll5136 VirR YP_002284155.1 PFAM: PilT protein domain protein; KEGG: oan:Oant_4749 PilT protein domain protein YP_002284156.1 TIGRFAM: prevent-host-death family protein; KEGG: rec:RHECIAT_PC0000741 putative antitoxin of toxin-antitoxin stability system, prevent-host-death family YP_002284157.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rec:RHECIAT_PA0000115 putative sensory box/GGDEF family protein YP_002284158.1 KEGG: rec:RHECIAT_PC0000251 putative exopolysaccharide synthesis protein YP_002284159.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH01378 probable protein secretion protein, HlyD family YP_002284160.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000253 putative toxin secretion ABC transporter protein YP_002284161.1 KEGG: ret:RHE_CH01376 hypothetical protein YP_002284162.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_PC0000255 probable cobalamin biosynthesis protein YP_002284163.1 KEGG: rec:RHECIAT_PC0000256 hypothetical protein YP_002284164.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rec:RHECIAT_PC0000257 putative cobalamin biosynthesis protein YP_002284165.1 KEGG: rec:RHECIAT_PC0000258 hypothetical protein; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Ig family protein; SMART: PKD domain containing protein; Dystroglycan-type cadherin domain protein YP_002284166.1 PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01370 exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein) YP_002284167.1 PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_CH01369 hypothetical protein YP_002284168.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rec:RHECIAT_PC0000261 probable aminotransferase protein (involved in cell wall biogenesis) YP_002284169.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ret:RHE_CH01367 probable UDP-glucose 4-epimerase protein YP_002284170.1 KEGG: ret:RHE_CH01366 hypothetical protein YP_002284171.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ret:RHE_CH01365 putative aminotransferase protein YP_002284172.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_PC0000265 probable oxidoreductase protein YP_002284173.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_PC0000266 probable acetyltransferase protein YP_002284174.1 PFAM: regulatory protein LuxR; KEGG: rec:RHECIAT_PC0000267 probable transcriptional regulator protein, LuxR family YP_002284175.1 KEGG: ret:RHE_CH01361 hypothetical protein YP_002284176.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: rec:RHECIAT_PC0000270 putative dTDP-glucose 4,6-dehydratase protein YP_002284177.1 KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_002284178.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: ret:RHE_CH01358 putative teichoic acid biosynthesis, UDP-N-acetyl-D-mannosaminuronic acid transferase protein YP_002284179.1 KEGG: rec:RHECIAT_PC0000273 hypothetical protein YP_002284180.1 PFAM: O-antigen polymerase; KEGG: rec:RHECIAT_PC0000274 exopolysaccharide production protein YP_002284182.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_PC0000275 probable glycosyltransferase protein YP_002284183.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_PC0000276 probable glycosyltransferase protein YP_002284184.1 PFAM: glycosyl transferase group 1; KEGG: rec:RHECIAT_PC0000277 probable glycosyltransferase protein YP_002284185.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rec:RHECIAT_PC0000278 probable exopolysaccaride biosynthesis receptor protein-tyrosine kinase protein YP_002284186.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_PC0000279 GDP-mannose 4,6-dehydratase protein YP_002284187.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: mex:Mext_4620 NAD-dependent epimerase/dehydratase YP_002284189.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rec:RHECIAT_CH0004206 putative mechanosensitive ion channel family protein YP_002284190.1 KEGG: rec:RHECIAT_CH0001168 hypothetical protein YP_002284191.1 KEGG: ret:RHE_PB00041 probable L-isoaspartyl protein carboxyl methyltransferase protein; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11 YP_002284192.1 KEGG: mes:Meso_3510 conserved hypothetical membrane-anchored protein YP_002284193.1 PFAM: alpha/beta hydrolase fold; KEGG: mes:Meso_4078 alpha/beta hydrolase fold YP_002284194.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gdi:GDI0257 putative sensor histidine kinase YP_002284195.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000314 putative transcriptional regulator protein, GntR family YP_002284196.1 KEGG: rec:RHECIAT_PC0000315 hypothetical protein YP_002284197.1 KEGG: ret:RHE_PB00036 probable oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002284198.1 KEGG: ret:RHE_PB00035 probable oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002284199.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000318 putative oligopeptide ABC transporter, permease protein YP_002284200.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00033 putative oligopeptide ABC transporter, permease protein YP_002284201.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000320 putative oligopeptide ABC transporter, substrate-binding protein YP_002284202.1 PFAM: dihydrodipicolinate synthetase; KEGG: rec:RHECIAT_PC0000321 dihydrodipicolinate synthase protein YP_002284203.1 KEGG: ret:RHE_PB00030 putative glycosyl hydrolase protein YP_002284204.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rec:RHECIAT_PC0000323 probable iron alcohol dehydrogenase protein YP_002284205.1 KEGG: rec:RHECIAT_PC0000324 4-hydroxythreonine-4-phosphate dehydrogenase protein; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_002284206.1 PFAM: acyltransferase 3; KEGG: ret:RHE_PE00199 putative acetyltransferase protein YP_002284207.1 PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_PE00198 putative succinoglycan biosynthesis transport protein YP_002284208.1 PFAM: polysaccharide pyruvyl transferase; KEGG: ret:RHE_PE00197 probable exopolysaccharide polymerization protein YP_002284209.1 PFAM: RES domain protein; KEGG: smd:Smed_5424 RES domain protein YP_002284210.1 PFAM: conserved hypothetical protein; KEGG: mlo:mlr9078 hypothetical protein YP_002284211.1 PFAM: alanyl-tRNA synthetase class IIc; KEGG: ret:RHE_PB00027 putative class II aminoacyl t-RNA synthetase domain protein YP_002284212.1 KEGG: psb:Psyr_2877 periplasmic binding protein/LacI transcriptional regulator YP_002284213.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppf:Pput_2994 ABC transporter related YP_002284214.1 PFAM: inner-membrane translocator; KEGG: ppu:PP_2760 ribose transport permease protein, putative YP_002284215.1 PFAM: inner-membrane translocator; KEGG: pst:PSPTO_2993 ribose ABC transporter, permease protein, putative YP_002284216.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: rec:RHECIAT_PC0000325 glycerol kinase protein YP_002284217.1 KEGG: rec:RHECIAT_PC0000326 putative sugar ABC transporter, substrate-binding protein YP_002284218.1 KEGG: rec:RHECIAT_PC0000327 hypothetical conserved membrane protein YP_002284219.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000328 probable sugar ABC transporter, permease protein YP_002284220.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000329 probable sugar ABC transporter, permease protein YP_002284221.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000330 probable sugar ABC transporter, ATP-binding protein YP_002284222.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000331 probable sugar ABC transporter, ATP-binding protein YP_002284223.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_002284224.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rec:RHECIAT_PC0000333 probable transcriptional regulator protein, DeoR family YP_002284225.1 KEGG: rec:RHECIAT_PC0000531 hypothetical protein YP_002284226.1 PFAM: heat shock protein Hsp20; KEGG: ret:RHE_PF00472 probable small heat shock protein YP_002284227.1 KEGG: bph:Bphy_5182 hypothetical protein YP_002284228.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; sterile alpha motif SAM protein; Sterile alpha motif homology 2; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bph:Bphy_5181 adenylate/guanylate cyclase YP_002284229.1 KEGG: sme:SMc01547 hypothetical protein YP_002284230.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ret:RHE_PB00017 hypothetical protein YP_002284231.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_PB00016 probable transcriptional regulator protein, LysR family YP_002284232.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PB00015 putative acetyltransferase protein YP_002284233.1 PFAM: protein of unknown function DUF992; KEGG: ret:RHE_PB00014 hypothetical protein YP_002284234.1 PFAM: protein of unknown function DUF1328; KEGG: smd:Smed_0341 protein of unknown function DUF1328 YP_002284235.1 KEGG: rec:RHECIAT_PC0000337 hypothetical protein YP_002284236.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hau:Haur_1770 glyoxalase/bleomycin resistance protein/dioxygenase YP_002284237.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000338 probable ABC transporter, ATP-binding protein YP_002284238.1 KEGG: ret:RHE_PB00011 hypothetical protein YP_002284239.1 PFAM: Aldose 1-epimerase; KEGG: rec:RHECIAT_PC0000340 putative aldose 1-epimerase protein YP_002284240.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rec:RHECIAT_PC0000341 multidrug efflux transporter protein YP_002284241.1 PFAM: secretion protein HlyD family protein; KEGG: rec:RHECIAT_PC0000342 multidrug efflux transporter protein YP_002284242.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_PC0000343 multidrug efflux transcriptional regulator protein, TetR family YP_002284243.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_002284244.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ret:RHE_PB00005 probable transcriptional regulator protein, GntR family YP_002284245.1 KEGG: ret:RHE_PB00004 hypothetical protein YP_002284246.1 KEGG: rec:RHECIAT_PC0000347 hypothetical protein YP_002284247.1 PFAM: O-antigen polymerase; KEGG: rec:RHECIAT_PC0000348 putative O-antigen ligase protein YP_002284248.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: rec:RHECIAT_PC0000349 dTDP-glucose 4,6-dehydratase protein YP_002284249.1 PFAM: sugar transferase; KEGG: rec:RHECIAT_PC0000350 galactosyltransferase protein YP_002284251.1 PFAM: replication protein C; KEGG: ret:RHE_PB00165 plasmid replication protein RepCb YP_002284252.1 TIGRFAM: parB-like partition protein; plasmid partitioning protein RepB; PFAM: ParB domain protein nuclease; RepB plasmid partition; KEGG: ret:RHE_PB00164 plasmid partitioning protein RepBb YP_002284253.1 TIGRFAM: plasmid partitioning protein RepA; PFAM: regulatory protein MerR; Cobyrinic acid ac-diamide synthase; KEGG: ret:RHE_PB00163 plasmid partitioning protein RepAb YP_002284254.1 KEGG: rec:RHECIAT_CH0003445 hypothetical protein YP_002284255.1 KEGG: ret:RHE_CH03207 hypothetical protein YP_002284256.1 PFAM: helix-turn-helix domain protein; KEGG: rec:RHECIAT_PC0000157 probable transcriptional regulator protein YP_002284257.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_PB00161 probable fosmidomycin antibiotic resistence permease protein YP_002284258.1 PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_PC00012 probable NAD(P)H-dependent FMN reductase protein YP_002284259.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rec:RHECIAT_PC0000159 putative ABC transporter, substrate-binding protein, lipoprotein YaeC family YP_002284260.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000160 putative ABC transporter, ATP-binding protein YP_002284261.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000161 putative ABC transporter, permease protein YP_002284262.1 KEGG: rec:RHECIAT_PC0000162 probable monooxygenase protein YP_002284263.1 MDM; functions in conversion of succinate to propionate YP_002284264.1 KEGG: ret:RHE_PB00156 hypothetical protein YP_002284265.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_PC0000165 probable oxidoreductase protein YP_002284266.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_PC0000166 probable oxidoreductase protein YP_002284267.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_PB00152 putative glyoxalase protein YP_002284268.1 TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: ret:RHE_PE00117 putative amidase protein YP_002284269.1 TIGRFAM: urea amidolyase related protein; urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ret:RHE_PE00118 putative UreA amidolyase protein YP_002284270.1 TIGRFAM: urea carboxylase-associated protein 1; KEGG: ret:RHE_PE00119 hypothetical protein YP_002284271.1 TIGRFAM: urea carboxylase-associated protein 2; KEGG: rec:RHECIAT_PC0000105 hypothetical protein YP_002284272.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PE00121 putative ABC transporter, ATP-binding protein YP_002284273.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00122 putative ABC transporter, permease protein YP_002284274.1 TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; PFAM: NLPA lipoprotein; KEGG: rec:RHECIAT_PC0000108 putative ABC transporter, substrate-binding protein YP_002284275.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: rec:RHECIAT_PC0000169 probable transcriptional regulator protein, AraC family YP_002284276.1 PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PB00150 probable sugar ABC transporter, substrate-binding protein YP_002284277.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00149 probable sugar ABC transporter, permease protein YP_002284278.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000171 probable sugar ABC transporter, permease protein YP_002284279.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ret:RHE_PB00147 probable sugar ABC transporter, ATP-binding protein YP_002284280.1 PFAM: oxidoreductase domain protein; aldo/keto reductase; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: rec:RHECIAT_PC0000173 probable oxidoreductase protein YP_002284281.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_PC00054 probable methyltransferase protein YP_002284282.1 PFAM: regulatory protein TetR; KEGG: rec:RHECIAT_PA0000349 probable transcriptional regulator protein, TetR family YP_002284283.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rec:RHECIAT_PA0000350 probable thioredoxin reductase protein YP_002284284.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: azc:AZC_0586 putative outer membrane lipoprotein YP_002284285.1 KEGG: rec:RHECIAT_PC0000174 cytochrome bd ubiquinol oxidase protein, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_002284286.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: rec:RHECIAT_PC0000175 cytochrome bd ubiquinol oxidase protein, subunit I YP_002284287.1 KEGG: rec:RHECIAT_PC0000176 putative ABC transporter involved in cytochrome bd biosynthesis, ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase YP_002284288.1 KEGG: rec:RHECIAT_PC0000177 putative ABC transporter involved in cytochrome bd biosynthesis, ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_002284289.1 KEGG: rec:RHECIAT_PC0000178 putative transcriptional regulator protein YP_002284290.1 PFAM: HupE/UreJ protein; KEGG: ret:RHE_PB00145 hypothetical protein YP_002284291.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ret:RHE_PB00144 probable phosphoglycerate oxidoreductase protein YP_002284292.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: rec:RHECIAT_PC0000182 putative import inner membrane translocase protein, TIM family YP_002284293.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ret:RHE_PB00140 hypothetical protein YP_002284294.1 PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_PC0000184 putative sugar ABC transporter, substrate-binding protein YP_002284295.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00138 putative sugar ABC transporter, permease protein YP_002284296.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00137 putative sugar ABC transporter, permease protein YP_002284297.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000187 putative sugar ABC transporter, ATP-binding protein YP_002284298.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rec:RHECIAT_PC0000188 putative glycerophosphoryl diester phosphodiesterase protein YP_002284299.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rec:RHECIAT_PC0000189 putative transcriptional regulator protein, LacI family YP_002284300.1 PFAM: inositol monophosphatase; KEGG: rec:RHECIAT_PC0000190 putative myo-inositol monophosphatase protein YP_002284301.1 KEGG: cts:Ctha_1726 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein YP_002284302.1 KEGG: ret:RHE_PB00132 hypothetical protein YP_002284303.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: atc:AGR_C_2620 hypothetical protein YP_002284304.1 PFAM: methylenetetrahydrofolate reductase; KEGG: xcb:XC_0326 5,10-methylenetetrahydrofolate reductase YP_002284305.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2861 aminomethyltransferase YP_002284306.1 PFAM: aminotransferase class V; KEGG: ret:RHE_PB00131 probable aspartate aminotransferase protein YP_002284307.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000193 putative ABC transporter, ATP binding protein YP_002284308.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000194 probable ABC transporter, ATP-binding protein YP_002284309.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000195 probable ABC transporter, permease protein YP_002284310.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_PC0000196 probable ABC transporter, permease protein YP_002284311.1 PFAM: extracellular solute-binding protein family 5; KEGG: rec:RHECIAT_PC0000197 probable oligopeptide ABC transporter, substrate-binding protein YP_002284312.1 KEGG: ret:RHE_PB00125 probable monooxygenase protein, DszA family YP_002284313.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_PB00124 putative sugar ABC transporter, permease protein YP_002284314.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_PB00123 probable sugar ABC transporter, ATP-binding protein YP_002284315.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PB00122 probable sugar ABC transporter, substrate-binding protein YP_002284316.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PB00121 probable acyl-CoA dehydrogenase protein YP_002284317.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ret:RHE_PB00120 probable FMNH2-dependent monooxygenase protein YP_002284318.1 PFAM: plasmid stabilization system; KEGG: bbt:BBta_4865 hypothetical protein YP_002284319.1 PFAM: protein of unknown function UPF0156; KEGG: atc:AGR_C_1484 hypothetical protein YP_002284320.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ret:RHE_PB00118 probable transcriptional regulator protein, LacI family YP_002284321.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: rec:RHECIAT_PC0000199 putative dehydrogenase protein YP_002284322.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rec:RHECIAT_PC0000200 putative xylose isomerase domain protein YP_002284323.1 PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMb21595 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor YP_002284324.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb21594 putative sugar uptake ABC transporter permease protein YP_002284325.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: smd:Smed_4914 binding-protein-dependent transport systems inner membrane component YP_002284326.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000204 probable sugar ABC transporter, ATP-binding protein YP_002284327.1 PFAM: inositol monophosphatase; KEGG: ret:RHE_PB00111 myo-inositol-1(or 4)-monophosphatase protein YP_002284328.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pde:Pden_4944 ABC transporter related YP_002284329.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cms:CMS_1336 putative inner membrane transport protein YP_002284330.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cmi:CMM_1893 putative polyamine ABC transporter, permease component YP_002284331.1 PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_1338 putative substrate-binding transport protein YP_002284332.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_002284333.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rec:RHECIAT_PC0000208 putative methyltransferase protein