-- dump date 20120504_160252 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_515931.1 89885733 3959995 complement(1..1791) 1 NC_007901.1 type II secretion system protein E 1791 3959995 Rfer_4246 Rhodoferax ferrireducens T118 type II secretion system protein E YP_515931.1 1 R 338969 CDS YP_515932.1 89885734 3959996 complement(1803..3113) 1 NC_007901.1 hypothetical protein 3113 3959996 Rfer_4247 Rhodoferax ferrireducens T118 hypothetical protein YP_515932.1 1803 R 338969 CDS YP_515933.1 89885735 3959997 complement(3123..3644) 1 NC_007901.1 hypothetical protein 3644 3959997 Rfer_4248 Rhodoferax ferrireducens T118 hypothetical protein YP_515933.1 3123 R 338969 CDS YP_515934.1 89885736 3959998 complement(3647..5098) 1 NC_007901.1 hypothetical protein 5098 3959998 Rfer_4249 Rhodoferax ferrireducens T118 hypothetical protein YP_515934.1 3647 R 338969 CDS YP_515935.1 89885737 3959999 complement(5114..5593) 1 NC_007901.1 hypothetical protein 5593 3959999 Rfer_4250 Rhodoferax ferrireducens T118 hypothetical protein YP_515935.1 5114 R 338969 CDS YP_515936.1 89885738 3960000 complement(5603..6730) 1 NC_007901.1 hypothetical protein 6730 3960000 Rfer_4251 Rhodoferax ferrireducens T118 hypothetical protein YP_515936.1 5603 R 338969 CDS YP_515937.1 89885739 3960001 complement(6727..8049) 1 NC_007901.1 conjugation TrbI-like protein 8049 3960001 Rfer_4252 Rhodoferax ferrireducens T118 conjugation TrbI-like protein YP_515937.1 6727 R 338969 CDS YP_515938.1 89885740 3959828 complement(8100..8912) 1 NC_007901.1 conjugal transfer protein TrbG/VirB9/CagX 8912 3959828 Rfer_4253 Rhodoferax ferrireducens T118 conjugal transfer protein TrbG/VirB9/CagX YP_515938.1 8100 R 338969 CDS YP_515939.1 89885741 3959829 complement(8912..9655) 1 NC_007901.1 Type IV secretory pathway component VirB8-like 9655 3959829 Rfer_4254 Rhodoferax ferrireducens T118 Type IV secretory pathway component VirB8-like YP_515939.1 8912 R 338969 CDS YP_515940.1 89885742 3959830 complement(9877..11943) 1 NC_007901.1 AAA ATPase, central region 11943 3959830 Rfer_4255 Rhodoferax ferrireducens T118 AAA ATPase, central region YP_515940.1 9877 R 338969 CDS YP_515941.1 89885743 3959831 complement(11943..12350) 1 NC_007901.1 hypothetical protein 12350 3959831 Rfer_4256 Rhodoferax ferrireducens T118 hypothetical protein YP_515941.1 11943 R 338969 CDS YP_515942.1 89885744 3959832 complement(12496..12843) 1 NC_007901.1 hypothetical protein 12843 3959832 Rfer_4257 Rhodoferax ferrireducens T118 hypothetical protein YP_515942.1 12496 R 338969 CDS YP_515943.1 89885745 3959833 complement(12974..14875) 1 NC_007901.1 hypothetical protein 14875 3959833 Rfer_4258 Rhodoferax ferrireducens T118 hypothetical protein YP_515943.1 12974 R 338969 CDS YP_515944.1 89885746 3959834 complement(14893..15657) 1 NC_007901.1 hypothetical protein 15657 3959834 Rfer_4259 Rhodoferax ferrireducens T118 hypothetical protein YP_515944.1 14893 R 338969 CDS YP_515945.1 89885747 3959835 complement(15694..18189) 1 NC_007901.1 Type IV secretory pathway VirB4 components-like 18189 3959835 Rfer_4260 Rhodoferax ferrireducens T118 Type IV secretory pathway VirB4 components-like YP_515945.1 15694 R 338969 CDS YP_515946.1 89885748 3959836 complement(18183..18488) 1 NC_007901.1 hypothetical protein 18488 3959836 Rfer_4261 Rhodoferax ferrireducens T118 hypothetical protein YP_515946.1 18183 R 338969 CDS YP_515947.1 89885749 3959837 complement(18499..18867) 1 NC_007901.1 conjugal transfer protein TrbC 18867 3959837 Rfer_4262 Rhodoferax ferrireducens T118 conjugal transfer protein TrbC YP_515947.1 18499 R 338969 CDS YP_515948.1 89885750 3959838 complement(18868..19863) 1 NC_007901.1 type II secretion system protein E 19863 3959838 Rfer_4263 Rhodoferax ferrireducens T118 type II secretion system protein E YP_515948.1 18868 R 338969 CDS YP_515949.1 89885751 3959839 complement(19935..20564) 1 NC_007901.1 hypothetical protein 20564 3959839 Rfer_4264 Rhodoferax ferrireducens T118 hypothetical protein YP_515949.1 19935 R 338969 CDS YP_515950.1 89885752 3959840 complement(20573..21202) 1 NC_007901.1 hypothetical protein 21202 3959840 Rfer_4265 Rhodoferax ferrireducens T118 hypothetical protein YP_515950.1 20573 R 338969 CDS YP_515951.1 89885753 3959841 complement(21195..23084) 1 NC_007901.1 hypothetical protein 23084 3959841 Rfer_4266 Rhodoferax ferrireducens T118 hypothetical protein YP_515951.1 21195 R 338969 CDS YP_515952.1 89885754 3959842 complement(23093..25021) 1 NC_007901.1 relaxase 25021 3959842 Rfer_4267 Rhodoferax ferrireducens T118 relaxase YP_515952.1 23093 R 338969 CDS YP_515953.1 89885755 3959843 complement(25127..25696) 1 NC_007901.1 hypothetical protein 25696 3959843 Rfer_4268 Rhodoferax ferrireducens T118 hypothetical protein YP_515953.1 25127 R 338969 CDS YP_515954.1 89885756 3959844 complement(25686..25970) 1 NC_007901.1 hypothetical protein 25970 3959844 Rfer_4269 Rhodoferax ferrireducens T118 hypothetical protein YP_515954.1 25686 R 338969 CDS YP_515955.1 89885757 3959845 26443..27141 1 NC_007901.1 hypothetical protein 27141 3959845 Rfer_4270 Rhodoferax ferrireducens T118 hypothetical protein YP_515955.1 26443 D 338969 CDS YP_515956.1 89885758 3959846 complement(27235..28269) 1 NC_007901.1 hypothetical protein 28269 3959846 Rfer_4271 Rhodoferax ferrireducens T118 hypothetical protein YP_515956.1 27235 R 338969 CDS YP_515957.1 89885759 3959847 complement(28279..28818) 1 NC_007901.1 outer membrane lipoprotein 28818 3959847 Rfer_4272 Rhodoferax ferrireducens T118 outer membrane lipoprotein YP_515957.1 28279 R 338969 CDS YP_515958.1 89885760 3959809 complement(29054..30907) 1 NC_007901.1 von Willebrand factor, type A 30907 3959809 Rfer_4273 Rhodoferax ferrireducens T118 von Willebrand factor, type A YP_515958.1 29054 R 338969 CDS YP_515959.1 89885761 3959810 complement(30916..32022) 1 NC_007901.1 hypothetical protein 32022 3959810 Rfer_4274 Rhodoferax ferrireducens T118 hypothetical protein YP_515959.1 30916 R 338969 CDS YP_515960.1 89885762 3959811 complement(32645..33019) 1 NC_007901.1 single-strand binding protein/primosomal replication protein n 33019 3959811 Rfer_4275 Rhodoferax ferrireducens T118 single-strand binding protein/primosomal replication protein n YP_515960.1 32645 R 338969 CDS YP_515961.1 89885763 3959812 complement(33026..34111) 1 NC_007901.1 hypothetical protein 34111 3959812 Rfer_4276 Rhodoferax ferrireducens T118 hypothetical protein YP_515961.1 33026 R 338969 CDS YP_515962.1 89885764 3959813 complement(34152..34868) 1 NC_007901.1 hypothetical protein 34868 3959813 Rfer_4277 Rhodoferax ferrireducens T118 hypothetical protein YP_515962.1 34152 R 338969 CDS YP_515963.1 89885765 3959814 complement(34865..35770) 1 NC_007901.1 ATPase 35770 3959814 Rfer_4278 Rhodoferax ferrireducens T118 ATPase YP_515963.1 34865 R 338969 CDS YP_515964.1 89885766 3959815 complement(35772..36578) 1 NC_007901.1 hypothetical protein 36578 3959815 Rfer_4279 Rhodoferax ferrireducens T118 hypothetical protein YP_515964.1 35772 R 338969 CDS YP_515965.1 89885767 3959816 37411..38232 1 NC_007901.1 hypothetical protein 38232 3959816 Rfer_4280 Rhodoferax ferrireducens T118 hypothetical protein YP_515965.1 37411 D 338969 CDS YP_515966.1 89885768 3959817 38333..40153 1 NC_007901.1 UvrD/REP helicase 40153 3959817 Rfer_4281 Rhodoferax ferrireducens T118 UvrD/REP helicase YP_515966.1 38333 D 338969 CDS YP_515967.1 89885769 3959818 complement(40150..40992) 1 NC_007901.1 hypothetical protein 40992 3959818 Rfer_4282 Rhodoferax ferrireducens T118 hypothetical protein YP_515967.1 40150 R 338969 CDS YP_515968.1 89885770 3959819 complement(40992..41372) 1 NC_007901.1 hypothetical protein 41372 3959819 Rfer_4283 Rhodoferax ferrireducens T118 hypothetical protein YP_515968.1 40992 R 338969 CDS YP_515969.1 89885771 3959820 complement(41369..42421) 1 NC_007901.1 parB-like partition proteins 42421 3959820 Rfer_4284 Rhodoferax ferrireducens T118 parB-like partition proteins YP_515969.1 41369 R 338969 CDS YP_515970.1 89885772 3959821 complement(42418..43107) 1 NC_007901.1 chromosome partitioning ATPase protein-like 43107 3959821 Rfer_4285 Rhodoferax ferrireducens T118 chromosome partitioning ATPase protein-like YP_515970.1 42418 R 338969 CDS YP_515971.1 89885773 3959822 complement(44702..45664) 1 NC_007901.1 hypothetical protein 45664 3959822 Rfer_4286 Rhodoferax ferrireducens T118 hypothetical protein YP_515971.1 44702 R 338969 CDS YP_515972.1 89885774 3959823 complement(45755..46561) 1 NC_007901.1 hypothetical protein 46561 3959823 Rfer_4287 Rhodoferax ferrireducens T118 hypothetical protein YP_515972.1 45755 R 338969 CDS YP_515973.1 89885775 3959824 46964..47899 1 NC_007901.1 hypothetical protein 47899 3959824 Rfer_4288 Rhodoferax ferrireducens T118 hypothetical protein YP_515973.1 46964 D 338969 CDS YP_515974.1 89885776 3959825 complement(47883..49184) 1 NC_007901.1 hypothetical protein 49184 3959825 Rfer_4289 Rhodoferax ferrireducens T118 hypothetical protein YP_515974.1 47883 R 338969 CDS YP_515975.1 89885777 3959826 complement(49322..49705) 1 NC_007901.1 hypothetical protein 49705 3959826 Rfer_4290 Rhodoferax ferrireducens T118 hypothetical protein YP_515975.1 49322 R 338969 CDS YP_515976.1 89885778 3959886 complement(50599..52911) 1 NC_007901.1 hypothetical protein 52911 3959886 Rfer_4292 Rhodoferax ferrireducens T118 hypothetical protein YP_515976.1 50599 R 338969 CDS YP_515977.1 89885779 3959887 complement(53159..53473) 1 NC_007901.1 hypothetical protein 53473 3959887 Rfer_4293 Rhodoferax ferrireducens T118 hypothetical protein YP_515977.1 53159 R 338969 CDS YP_515978.1 89885780 3959888 complement(53614..54591) 1 NC_007901.1 hypothetical protein 54591 3959888 Rfer_4294 Rhodoferax ferrireducens T118 hypothetical protein YP_515978.1 53614 R 338969 CDS YP_515979.1 89885781 3959889 complement(56369..61549) 1 NC_007901.1 helicase-like 61549 3959889 Rfer_4295 Rhodoferax ferrireducens T118 helicase-like YP_515979.1 56369 R 338969 CDS YP_515980.1 89885782 3959890 62530..63036 1 NC_007901.1 hypothetical protein 63036 3959890 Rfer_4296 Rhodoferax ferrireducens T118 hypothetical protein YP_515980.1 62530 D 338969 CDS YP_515981.1 89885783 3959891 complement(63298..64077) 1 NC_007901.1 hypothetical protein 64077 3959891 Rfer_4297 Rhodoferax ferrireducens T118 hypothetical protein YP_515981.1 63298 R 338969 CDS YP_515982.1 89885784 3959892 64302..65669 1 NC_007901.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 65669 3959892 Rfer_4298 Rhodoferax ferrireducens T118 DNA repair protein RadA YP_515982.1 64302 D 338969 CDS YP_515983.1 89885785 3959893 complement(65685..66470) 1 NC_007901.1 hypothetical protein 66470 3959893 Rfer_4299 Rhodoferax ferrireducens T118 hypothetical protein YP_515983.1 65685 R 338969 CDS YP_515984.1 89885786 3959894 complement(66731..66970) 1 NC_007901.1 hypothetical protein 66970 3959894 Rfer_4300 Rhodoferax ferrireducens T118 hypothetical protein YP_515984.1 66731 R 338969 CDS YP_515985.1 89885787 3959895 67007..67480 1 NC_007901.1 hypothetical protein 67480 3959895 Rfer_4301 Rhodoferax ferrireducens T118 hypothetical protein YP_515985.1 67007 D 338969 CDS YP_515986.1 89885788 3959896 67477..67860 1 NC_007901.1 hypothetical protein 67860 3959896 Rfer_4302 Rhodoferax ferrireducens T118 hypothetical protein YP_515986.1 67477 D 338969 CDS YP_515987.1 89885789 3959897 67970..68641 1 NC_007901.1 hypothetical protein 68641 3959897 Rfer_4303 Rhodoferax ferrireducens T118 hypothetical protein YP_515987.1 67970 D 338969 CDS YP_515988.1 89885790 3959898 68619..68849 1 NC_007901.1 hypothetical protein 68849 3959898 Rfer_4304 Rhodoferax ferrireducens T118 hypothetical protein YP_515988.1 68619 D 338969 CDS YP_515989.1 89885791 3959899 69272..70363 1 NC_007901.1 hypothetical protein 70363 3959899 Rfer_4305 Rhodoferax ferrireducens T118 hypothetical protein YP_515989.1 69272 D 338969 CDS YP_515990.1 89885792 3959900 70522..70902 1 NC_007901.1 hypothetical protein 70902 3959900 Rfer_4306 Rhodoferax ferrireducens T118 hypothetical protein YP_515990.1 70522 D 338969 CDS YP_515991.1 89885793 3959901 71371..73266 1 NC_007901.1 hypothetical protein 73266 3959901 Rfer_4307 Rhodoferax ferrireducens T118 hypothetical protein YP_515991.1 71371 D 338969 CDS YP_515992.1 89885794 3959902 73274..73561 1 NC_007901.1 hypothetical protein 73561 3959902 Rfer_4308 Rhodoferax ferrireducens T118 hypothetical protein YP_515992.1 73274 D 338969 CDS YP_515993.1 89885795 3959903 73770..73976 1 NC_007901.1 hypothetical protein 73976 3959903 Rfer_4309 Rhodoferax ferrireducens T118 hypothetical protein YP_515993.1 73770 D 338969 CDS YP_515994.1 89885796 3959904 73982..74239 1 NC_007901.1 hypothetical protein 74239 3959904 Rfer_4310 Rhodoferax ferrireducens T118 hypothetical protein YP_515994.1 73982 D 338969 CDS YP_515995.1 89885797 3959905 74356..75492 1 NC_007901.1 DNA polymerase III, beta subunit 75492 3959905 Rfer_4311 Rhodoferax ferrireducens T118 DNA polymerase III, beta subunit YP_515995.1 74356 D 338969 CDS YP_515996.1 89885798 3959848 complement(76220..77245) 1 NC_007901.1 hypothetical protein 77245 3959848 Rfer_4312 Rhodoferax ferrireducens T118 hypothetical protein YP_515996.1 76220 R 338969 CDS YP_515997.1 89885799 3959849 77463..78539 1 NC_007901.1 hypothetical protein 78539 3959849 Rfer_4313 Rhodoferax ferrireducens T118 hypothetical protein YP_515997.1 77463 D 338969 CDS YP_515998.1 89885800 3959850 78601..79884 1 NC_007901.1 hypothetical protein 79884 3959850 Rfer_4314 Rhodoferax ferrireducens T118 hypothetical protein YP_515998.1 78601 D 338969 CDS YP_515999.1 89885801 3959851 79956..80411 1 NC_007901.1 hypothetical protein 80411 3959851 Rfer_4315 Rhodoferax ferrireducens T118 hypothetical protein YP_515999.1 79956 D 338969 CDS YP_516000.1 89885802 3959852 80426..80959 1 NC_007901.1 hypothetical protein 80959 3959852 Rfer_4316 Rhodoferax ferrireducens T118 hypothetical protein YP_516000.1 80426 D 338969 CDS YP_516001.1 89885803 3959853 81205..81600 1 NC_007901.1 hypothetical protein 81600 3959853 Rfer_4317 Rhodoferax ferrireducens T118 hypothetical protein YP_516001.1 81205 D 338969 CDS YP_516002.1 89885804 3959854 81621..82913 1 NC_007901.1 hypothetical protein 82913 3959854 Rfer_4318 Rhodoferax ferrireducens T118 hypothetical protein YP_516002.1 81621 D 338969 CDS YP_516003.1 89885805 3959855 83034..83981 1 NC_007901.1 DNA/RNA non-specific endonuclease 83981 3959855 Rfer_4319 Rhodoferax ferrireducens T118 DNA/RNA non-specific endonuclease YP_516003.1 83034 D 338969 CDS YP_516004.1 89885806 3959856 83968..84255 1 NC_007901.1 hypothetical protein 84255 3959856 Rfer_4320 Rhodoferax ferrireducens T118 hypothetical protein YP_516004.1 83968 D 338969 CDS YP_516005.1 89885807 3959857 84348..85040 1 NC_007901.1 hypothetical protein 85040 3959857 Rfer_4321 Rhodoferax ferrireducens T118 hypothetical protein YP_516005.1 84348 D 338969 CDS YP_516006.1 89885808 3959858 complement(85138..86184) 1 NC_007901.1 hypothetical protein 86184 3959858 Rfer_4322 Rhodoferax ferrireducens T118 hypothetical protein YP_516006.1 85138 R 338969 CDS YP_516007.1 89885809 3959859 complement(86275..87078) 1 NC_007901.1 hypothetical protein 87078 3959859 Rfer_4323 Rhodoferax ferrireducens T118 hypothetical protein YP_516007.1 86275 R 338969 CDS YP_516008.1 89885810 3959860 complement(87333..87740) 1 NC_007901.1 hypothetical protein 87740 3959860 Rfer_4324 Rhodoferax ferrireducens T118 hypothetical protein YP_516008.1 87333 R 338969 CDS YP_516009.1 89885811 3959861 87858..88163 1 NC_007901.1 hypothetical protein 88163 3959861 Rfer_4325 Rhodoferax ferrireducens T118 hypothetical protein YP_516009.1 87858 D 338969 CDS YP_516010.1 89885812 3959862 complement(88140..88427) 1 NC_007901.1 hypothetical protein 88427 3959862 Rfer_4326 Rhodoferax ferrireducens T118 hypothetical protein YP_516010.1 88140 R 338969 CDS YP_516011.1 89885813 3959863 88990..92502 1 NC_007901.1 hypothetical protein 92502 3959863 Rfer_4327 Rhodoferax ferrireducens T118 hypothetical protein YP_516011.1 88990 D 338969 CDS YP_516012.1 89885814 3959864 complement(92545..93786) 1 NC_007901.1 phage integrase 93786 3959864 Rfer_4328 Rhodoferax ferrireducens T118 phage integrase YP_516012.1 92545 R 338969 CDS YP_516013.1 89885815 3959865 complement(93783..94127) 1 NC_007901.1 hypothetical protein 94127 3959865 Rfer_4329 Rhodoferax ferrireducens T118 hypothetical protein YP_516013.1 93783 R 338969 CDS YP_516014.1 89885816 3959866 94801..95265 1 NC_007901.1 hypothetical protein 95265 3959866 Rfer_4330 Rhodoferax ferrireducens T118 hypothetical protein YP_516014.1 94801 D 338969 CDS YP_516015.1 89885817 3959925 95258..95554 1 NC_007901.1 hypothetical protein 95554 3959925 Rfer_4331 Rhodoferax ferrireducens T118 hypothetical protein YP_516015.1 95258 D 338969 CDS YP_516016.1 89885818 3959926 95673..95945 1 NC_007901.1 hypothetical protein 95945 3959926 Rfer_4332 Rhodoferax ferrireducens T118 hypothetical protein YP_516016.1 95673 D 338969 CDS YP_516017.1 89885819 3959927 96011..96949 1 NC_007901.1 hypothetical protein 96949 3959927 Rfer_4333 Rhodoferax ferrireducens T118 hypothetical protein YP_516017.1 96011 D 338969 CDS YP_516018.1 89885820 3959928 97067..98863 1 NC_007901.1 hypothetical protein 98863 3959928 Rfer_4334 Rhodoferax ferrireducens T118 hypothetical protein YP_516018.1 97067 D 338969 CDS YP_516019.1 89885821 3959929 complement(99086..99469) 1 NC_007901.1 hypothetical protein 99469 3959929 Rfer_4335 Rhodoferax ferrireducens T118 hypothetical protein YP_516019.1 99086 R 338969 CDS YP_516020.1 89885822 3959930 99566..100738 1 NC_007901.1 hypothetical protein 100738 3959930 Rfer_4336 Rhodoferax ferrireducens T118 hypothetical protein YP_516020.1 99566 D 338969 CDS YP_516021.1 89885823 3959931 100841..101740 1 NC_007901.1 methyltransferase type 11 101740 3959931 Rfer_4337 Rhodoferax ferrireducens T118 methyltransferase type 11 YP_516021.1 100841 D 338969 CDS YP_516022.1 89885824 3959932 complement(101801..102436) 1 NC_007901.1 hypothetical protein 102436 3959932 Rfer_4338 Rhodoferax ferrireducens T118 hypothetical protein YP_516022.1 101801 R 338969 CDS YP_516023.1 89885825 3959933 complement(102457..103698) 1 NC_007901.1 hypothetical protein 103698 3959933 Rfer_4339 Rhodoferax ferrireducens T118 hypothetical protein YP_516023.1 102457 R 338969 CDS YP_516024.1 89885826 3959934 104090..104752 1 NC_007901.1 hypothetical protein 104752 3959934 Rfer_4340 Rhodoferax ferrireducens T118 hypothetical protein YP_516024.1 104090 D 338969 CDS YP_516025.1 89885827 3959935 complement(105088..106386) 1 NC_007901.1 DNA-directed DNA polymerase 106386 3959935 Rfer_4341 Rhodoferax ferrireducens T118 DNA-directed DNA polymerase YP_516025.1 105088 R 338969 CDS YP_516026.1 89885828 3959936 complement(106393..106833) 1 NC_007901.1 putative prophage repressor 106833 3959936 Rfer_4342 Rhodoferax ferrireducens T118 putative prophage repressor YP_516026.1 106393 R 338969 CDS YP_516027.1 89885829 3959937 106926..107291 1 NC_007901.1 hypothetical protein 107291 3959937 Rfer_4343 Rhodoferax ferrireducens T118 hypothetical protein YP_516027.1 106926 D 338969 CDS YP_516028.1 89885830 3959938 107296..107943 1 NC_007901.1 hypothetical protein 107943 3959938 Rfer_4344 Rhodoferax ferrireducens T118 hypothetical protein YP_516028.1 107296 D 338969 CDS YP_516029.1 89885831 3959939 108460..109533 1 NC_007901.1 hypothetical protein 109533 3959939 Rfer_4345 Rhodoferax ferrireducens T118 hypothetical protein YP_516029.1 108460 D 338969 CDS YP_516030.1 89885832 3959940 109560..109991 1 NC_007901.1 hypothetical protein 109991 3959940 Rfer_4346 Rhodoferax ferrireducens T118 hypothetical protein YP_516030.1 109560 D 338969 CDS YP_516031.1 89885833 3959941 109994..110746 1 NC_007901.1 hypothetical protein 110746 3959941 Rfer_4347 Rhodoferax ferrireducens T118 hypothetical protein YP_516031.1 109994 D 338969 CDS YP_516032.1 89885834 3959942 complement(111367..112200) 1 NC_007901.1 CRISPR-associated Cas1 family protein 112200 3959942 Rfer_4348 Rhodoferax ferrireducens T118 CRISPR-associated Cas1 family protein YP_516032.1 111367 R 338969 CDS YP_516033.1 89885835 3959943 complement(112280..112822) 1 NC_007901.1 hypothetical protein 112822 3959943 Rfer_4349 Rhodoferax ferrireducens T118 hypothetical protein YP_516033.1 112280 R 338969 CDS YP_516034.1 89885836 3959944 complement(112810..113490) 1 NC_007901.1 hypothetical protein 113490 3959944 Rfer_4350 Rhodoferax ferrireducens T118 hypothetical protein YP_516034.1 112810 R 338969 CDS YP_516035.1 89885837 3959867 complement(113492..114610) 1 NC_007901.1 hypothetical protein 114610 3959867 Rfer_4351 Rhodoferax ferrireducens T118 hypothetical protein YP_516035.1 113492 R 338969 CDS YP_516036.1 89885838 3959868 114690..115358 1 NC_007901.1 hypothetical protein 115358 3959868 Rfer_4352 Rhodoferax ferrireducens T118 hypothetical protein YP_516036.1 114690 D 338969 CDS YP_516037.1 89885839 3959869 115481..116182 1 NC_007901.1 hypothetical protein 116182 3959869 Rfer_4353 Rhodoferax ferrireducens T118 hypothetical protein YP_516037.1 115481 D 338969 CDS YP_516038.1 89885840 3959870 116184..118625 1 NC_007901.1 DEAD/DEAH box helicase-like 118625 3959870 Rfer_4354 Rhodoferax ferrireducens T118 DEAD/DEAH box helicase-like YP_516038.1 116184 D 338969 CDS YP_516039.1 89885841 3959871 118658..119269 1 NC_007901.1 hypothetical protein 119269 3959871 Rfer_4355 Rhodoferax ferrireducens T118 hypothetical protein YP_516039.1 118658 D 338969 CDS YP_516040.1 89885842 3959872 complement(119343..120860) 1 NC_007901.1 hypothetical protein 120860 3959872 Rfer_4356 Rhodoferax ferrireducens T118 hypothetical protein YP_516040.1 119343 R 338969 CDS YP_516041.1 89885843 3959873 121369..121902 1 NC_007901.1 hypothetical protein 121902 3959873 Rfer_4357 Rhodoferax ferrireducens T118 hypothetical protein YP_516041.1 121369 D 338969 CDS YP_516042.1 89885844 3959874 complement(122104..123726) 1 NC_007901.1 hypothetical protein 123726 3959874 Rfer_4358 Rhodoferax ferrireducens T118 hypothetical protein YP_516042.1 122104 R 338969 CDS YP_516043.1 89885845 3959875 complement(123865..124761) 1 NC_007901.1 hypothetical protein 124761 3959875 Rfer_4359 Rhodoferax ferrireducens T118 hypothetical protein YP_516043.1 123865 R 338969 CDS YP_516044.1 89885846 3959876 complement(124864..125391) 1 NC_007901.1 hypothetical protein 125391 3959876 Rfer_4360 Rhodoferax ferrireducens T118 hypothetical protein YP_516044.1 124864 R 338969 CDS YP_516045.1 89885847 3959877 complement(125746..126975) 1 NC_007901.1 ATP dependent DNA ligase 126975 3959877 Rfer_4361 Rhodoferax ferrireducens T118 ATP dependent DNA ligase YP_516045.1 125746 R 338969 CDS YP_516046.1 89885848 3959878 complement(126994..128556) 1 NC_007901.1 hypothetical protein 128556 3959878 Rfer_4362 Rhodoferax ferrireducens T118 hypothetical protein YP_516046.1 126994 R 338969 CDS YP_516047.1 89885849 3959879 complement(129083..130270) 1 NC_007901.1 hypothetical protein 130270 3959879 Rfer_4363 Rhodoferax ferrireducens T118 hypothetical protein YP_516047.1 129083 R 338969 CDS YP_516048.1 89885850 3959880 complement(130390..131094) 1 NC_007901.1 hypothetical protein 131094 3959880 Rfer_4364 Rhodoferax ferrireducens T118 hypothetical protein YP_516048.1 130390 R 338969 CDS YP_516049.1 89885851 3959881 complement(131293..132018) 1 NC_007901.1 hypothetical protein 132018 3959881 Rfer_4365 Rhodoferax ferrireducens T118 hypothetical protein YP_516049.1 131293 R 338969 CDS YP_516050.1 89885852 3959882 complement(132097..132621) 1 NC_007901.1 hypothetical protein 132621 3959882 Rfer_4366 Rhodoferax ferrireducens T118 hypothetical protein YP_516050.1 132097 R 338969 CDS YP_516051.1 89885853 3959883 complement(133029..133736) 1 NC_007901.1 hypothetical protein 133736 3959883 Rfer_4367 Rhodoferax ferrireducens T118 hypothetical protein YP_516051.1 133029 R 338969 CDS YP_516052.1 89885854 3959884 complement(133883..134728) 1 NC_007901.1 hypothetical protein 134728 3959884 Rfer_4368 Rhodoferax ferrireducens T118 hypothetical protein YP_516052.1 133883 R 338969 CDS YP_516053.1 89885855 3959885 complement(135151..135675) 1 NC_007901.1 hypothetical protein 135675 3959885 Rfer_4369 Rhodoferax ferrireducens T118 hypothetical protein YP_516053.1 135151 R 338969 CDS YP_516054.1 89885856 3959906 complement(135792..137546) 1 NC_007901.1 hypothetical protein 137546 3959906 Rfer_4370 Rhodoferax ferrireducens T118 hypothetical protein YP_516054.1 135792 R 338969 CDS YP_516055.1 89885857 3959907 complement(137665..137970) 1 NC_007901.1 hypothetical protein 137970 3959907 Rfer_4371 Rhodoferax ferrireducens T118 hypothetical protein YP_516055.1 137665 R 338969 CDS YP_516056.1 89885858 3959908 complement(138249..138512) 1 NC_007901.1 hypothetical protein 138512 3959908 Rfer_4372 Rhodoferax ferrireducens T118 hypothetical protein YP_516056.1 138249 R 338969 CDS YP_516057.1 89885859 3959909 complement(138566..138931) 1 NC_007901.1 hypothetical protein 138931 3959909 Rfer_4373 Rhodoferax ferrireducens T118 hypothetical protein YP_516057.1 138566 R 338969 CDS YP_516058.1 89885860 3959910 complement(139123..140463) 1 NC_007901.1 hypothetical protein 140463 3959910 Rfer_4374 Rhodoferax ferrireducens T118 hypothetical protein YP_516058.1 139123 R 338969 CDS YP_516059.1 89885861 3959911 complement(140460..140969) 1 NC_007901.1 hypothetical protein 140969 3959911 Rfer_4375 Rhodoferax ferrireducens T118 hypothetical protein YP_516059.1 140460 R 338969 CDS YP_516060.1 89885862 3959912 complement(141113..141982) 1 NC_007901.1 hypothetical protein 141982 3959912 Rfer_4376 Rhodoferax ferrireducens T118 hypothetical protein YP_516060.1 141113 R 338969 CDS YP_516061.1 89885863 3959914 complement(142639..143130) 1 NC_007901.1 hypothetical protein 143130 3959914 Rfer_4377 Rhodoferax ferrireducens T118 hypothetical protein YP_516061.1 142639 R 338969 CDS YP_516062.1 89885864 3959915 143238..143516 1 NC_007901.1 hypothetical protein 143516 3959915 Rfer_4378 Rhodoferax ferrireducens T118 hypothetical protein YP_516062.1 143238 D 338969 CDS YP_516063.1 89885865 3959916 complement(143560..144132) 1 NC_007901.1 ERCC4 144132 3959916 Rfer_4379 Rhodoferax ferrireducens T118 ERCC4 YP_516063.1 143560 R 338969 CDS YP_516064.1 89885866 3959917 complement(144560..145702) 1 NC_007901.1 hypothetical protein 145702 3959917 Rfer_4380 Rhodoferax ferrireducens T118 hypothetical protein YP_516064.1 144560 R 338969 CDS YP_516065.1 89885867 3959918 complement(145716..147485) 1 NC_007901.1 ankyrin 147485 3959918 Rfer_4381 Rhodoferax ferrireducens T118 ankyrin YP_516065.1 145716 R 338969 CDS YP_516066.1 89885868 3959919 complement(147688..147936) 1 NC_007901.1 hypothetical protein 147936 3959919 Rfer_4382 Rhodoferax ferrireducens T118 hypothetical protein YP_516066.1 147688 R 338969 CDS YP_516067.1 89885869 3959920 complement(147998..149041) 1 NC_007901.1 hypothetical protein 149041 3959920 Rfer_4383 Rhodoferax ferrireducens T118 hypothetical protein YP_516067.1 147998 R 338969 CDS YP_516068.1 89885870 3959921 complement(149055..149537) 1 NC_007901.1 hypothetical protein 149537 3959921 Rfer_4384 Rhodoferax ferrireducens T118 hypothetical protein YP_516068.1 149055 R 338969 CDS YP_516069.1 89885871 3959922 complement(149599..150192) 1 NC_007901.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 150192 3959922 Rfer_4385 Rhodoferax ferrireducens T118 thymidine kinase YP_516069.1 149599 R 338969 CDS YP_516070.1 89885872 3959923 150718..150927 1 NC_007901.1 hypothetical protein 150927 3959923 Rfer_4386 Rhodoferax ferrireducens T118 hypothetical protein YP_516070.1 150718 D 338969 CDS YP_516071.1 89885873 3959924 151078..153234 1 NC_007901.1 diguanylate cyclase/phosphodiesterase 153234 3959924 Rfer_4387 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_516071.1 151078 D 338969 CDS YP_516072.1 89885874 3960002 complement(153374..153955) 1 NC_007901.1 hypothetical protein 153955 3960002 Rfer_4388 Rhodoferax ferrireducens T118 hypothetical protein YP_516072.1 153374 R 338969 CDS YP_516073.1 89885875 3960003 complement(153952..154743) 1 NC_007901.1 hypothetical protein 154743 3960003 Rfer_4389 Rhodoferax ferrireducens T118 hypothetical protein YP_516073.1 153952 R 338969 CDS YP_516074.1 89885876 3960004 complement(154745..155263) 1 NC_007901.1 hypothetical protein 155263 3960004 Rfer_4390 Rhodoferax ferrireducens T118 hypothetical protein YP_516074.1 154745 R 338969 CDS YP_516075.1 89885877 3960005 complement(155283..156188) 1 NC_007901.1 hypothetical protein 156188 3960005 Rfer_4391 Rhodoferax ferrireducens T118 hypothetical protein YP_516075.1 155283 R 338969 CDS YP_516076.1 89885878 3960006 complement(156228..159377) 1 NC_007901.1 hypothetical protein 159377 3960006 Rfer_4392 Rhodoferax ferrireducens T118 hypothetical protein YP_516076.1 156228 R 338969 CDS YP_516077.1 89885879 3960007 complement(159397..159942) 1 NC_007901.1 hypothetical protein 159942 3960007 Rfer_4393 Rhodoferax ferrireducens T118 hypothetical protein YP_516077.1 159397 R 338969 CDS YP_516078.1 89885880 3960008 complement(159939..160436) 1 NC_007901.1 hypothetical protein 160436 3960008 Rfer_4394 Rhodoferax ferrireducens T118 hypothetical protein YP_516078.1 159939 R 338969 CDS YP_516079.1 89885881 3960009 complement(160647..161294) 1 NC_007901.1 hypothetical protein 161294 3960009 Rfer_4395 Rhodoferax ferrireducens T118 hypothetical protein YP_516079.1 160647 R 338969 CDS YP_516080.1 89885882 3960010 complement(161336..162160) 1 NC_007901.1 hypothetical protein 162160 3960010 Rfer_4396 Rhodoferax ferrireducens T118 hypothetical protein YP_516080.1 161336 R 338969 CDS YP_516081.1 89885883 3960011 complement(162190..162567) 1 NC_007901.1 hypothetical protein 162567 3960011 Rfer_4397 Rhodoferax ferrireducens T118 hypothetical protein YP_516081.1 162190 R 338969 CDS YP_516082.1 89885884 3960012 complement(162641..163576) 1 NC_007901.1 hypothetical protein 163576 3960012 Rfer_4398 Rhodoferax ferrireducens T118 hypothetical protein YP_516082.1 162641 R 338969 CDS YP_516083.1 89885885 3960013 complement(163577..164833) 1 NC_007901.1 type II secretion system protein 164833 3960013 Rfer_4399 Rhodoferax ferrireducens T118 type II secretion system protein YP_516083.1 163577 R 338969 CDS YP_516084.1 89885886 3960014 complement(164830..166557) 1 NC_007901.1 type II secretion system protein E 166557 3960014 Rfer_4400 Rhodoferax ferrireducens T118 type II secretion system protein E YP_516084.1 164830 R 338969 CDS YP_516085.1 89885887 3960015 complement(166554..167258) 1 NC_007901.1 hypothetical protein 167258 3960015 Rfer_4401 Rhodoferax ferrireducens T118 hypothetical protein YP_516085.1 166554 R 338969 CDS YP_516086.1 89885888 3960016 complement(167251..169119) 1 NC_007901.1 type II and III secretion system protein 169119 3960016 Rfer_4402 Rhodoferax ferrireducens T118 type II and III secretion system protein YP_516086.1 167251 R 338969 CDS YP_516087.1 89885889 3960017 complement(169220..170647) 1 NC_007901.1 Type II secretory pathway component PulD-like 170647 3960017 Rfer_4403 Rhodoferax ferrireducens T118 Type II secretory pathway component PulD-like YP_516087.1 169220 R 338969 CDS YP_516088.1 89885890 3960018 complement(171208..172194) 1 NC_007901.1 response regulator receiver domain-containing protein 172194 3960018 Rfer_4404 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_516088.1 171208 R 338969 CDS YP_516089.1 89885891 3960019 complement(172522..173319) 1 NC_007901.1 UBA/THIF-type NAD/FAD binding fold 173319 3960019 Rfer_4405 Rhodoferax ferrireducens T118 UBA/THIF-type NAD/FAD binding fold YP_516089.1 172522 R 338969 CDS YP_516090.1 89885892 3960020 complement(173316..173945) 1 NC_007901.1 hypothetical protein 173945 3960020 Rfer_4406 Rhodoferax ferrireducens T118 hypothetical protein YP_516090.1 173316 R 338969 CDS YP_516091.1 89885893 3960040 complement(174136..174861) 1 NC_007901.1 hypothetical protein 174861 3960040 Rfer_4407 Rhodoferax ferrireducens T118 hypothetical protein YP_516091.1 174136 R 338969 CDS YP_516092.1 89885894 3960041 complement(174871..175920) 1 NC_007901.1 hypothetical protein 175920 3960041 Rfer_4408 Rhodoferax ferrireducens T118 hypothetical protein YP_516092.1 174871 R 338969 CDS YP_516093.1 89885895 3960042 complement(175920..176345) 1 NC_007901.1 hypothetical protein 176345 3960042 Rfer_4409 Rhodoferax ferrireducens T118 hypothetical protein YP_516093.1 175920 R 338969 CDS YP_516094.1 89885896 3960043 complement(176372..176881) 1 NC_007901.1 hypothetical protein 176881 3960043 Rfer_4410 Rhodoferax ferrireducens T118 hypothetical protein YP_516094.1 176372 R 338969 CDS YP_516095.1 89885897 3960044 complement(176995..177462) 1 NC_007901.1 hypothetical protein 177462 3960044 Rfer_4411 Rhodoferax ferrireducens T118 hypothetical protein YP_516095.1 176995 R 338969 CDS YP_516096.1 89885898 3960045 complement(177490..179232) 1 NC_007901.1 parB-like partition proteins 179232 3960045 Rfer_4412 Rhodoferax ferrireducens T118 parB-like partition proteins YP_516096.1 177490 R 338969 CDS YP_516097.1 89885899 3960046 complement(179481..181178) 1 NC_007901.1 response regulator receiver sensor signal transduction histidine kinase 181178 3960046 Rfer_4413 Rhodoferax ferrireducens T118 response regulator receiver sensor signal transduction histidine kinase YP_516097.1 179481 R 338969 CDS YP_516098.1 89885900 3960047 complement(181175..182695) 1 NC_007901.1 periplasmic sensor signal transduction histidine kinase 182695 3960047 Rfer_4414 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_516098.1 181175 R 338969 CDS YP_516099.1 89885901 3960048 182922..183443 1 NC_007901.1 hypothetical protein 183443 3960048 Rfer_4415 Rhodoferax ferrireducens T118 hypothetical protein YP_516099.1 182922 D 338969 CDS YP_516100.1 89885902 3960049 complement(183489..183767) 1 NC_007901.1 hypothetical protein 183767 3960049 Rfer_4416 Rhodoferax ferrireducens T118 hypothetical protein YP_516100.1 183489 R 338969 CDS YP_516101.1 89885903 3960050 complement(184118..184369) 1 NC_007901.1 hypothetical protein 184369 3960050 Rfer_4417 Rhodoferax ferrireducens T118 hypothetical protein YP_516101.1 184118 R 338969 CDS YP_516102.1 89885904 3960051 complement(184685..184936) 1 NC_007901.1 hypothetical protein 184936 3960051 Rfer_4418 Rhodoferax ferrireducens T118 hypothetical protein YP_516102.1 184685 R 338969 CDS YP_516103.1 89885905 3960052 complement(185232..185735) 1 NC_007901.1 GCN5-related N-acetyltransferase 185735 3960052 Rfer_4419 Rhodoferax ferrireducens T118 GCN5-related N-acetyltransferase YP_516103.1 185232 R 338969 CDS YP_516104.1 89885906 3960053 complement(186523..186867) 1 NC_007901.1 hypothetical protein 186867 3960053 Rfer_4420 Rhodoferax ferrireducens T118 hypothetical protein YP_516104.1 186523 R 338969 CDS YP_516105.1 89885907 3960054 complement(187180..187422) 1 NC_007901.1 hypothetical protein 187422 3960054 Rfer_4421 Rhodoferax ferrireducens T118 hypothetical protein YP_516105.1 187180 R 338969 CDS YP_516106.1 89885908 3960055 complement(187439..187882) 1 NC_007901.1 hypothetical protein 187882 3960055 Rfer_4422 Rhodoferax ferrireducens T118 hypothetical protein YP_516106.1 187439 R 338969 CDS YP_516107.1 89885909 3960056 complement(187892..188362) 1 NC_007901.1 hypothetical protein 188362 3960056 Rfer_4423 Rhodoferax ferrireducens T118 hypothetical protein YP_516107.1 187892 R 338969 CDS YP_516108.1 89885910 3960057 complement(188584..188871) 1 NC_007901.1 hypothetical protein 188871 3960057 Rfer_4424 Rhodoferax ferrireducens T118 hypothetical protein YP_516108.1 188584 R 338969 CDS YP_516109.1 89885911 3960058 complement(188890..191103) 1 NC_007901.1 hypothetical protein 191103 3960058 Rfer_4425 Rhodoferax ferrireducens T118 hypothetical protein YP_516109.1 188890 R 338969 CDS YP_516110.1 89885912 3960059 complement(191329..191802) 1 NC_007901.1 hypothetical protein 191802 3960059 Rfer_4426 Rhodoferax ferrireducens T118 hypothetical protein YP_516110.1 191329 R 338969 CDS YP_516111.1 89885913 3960021 complement(191825..192187) 1 NC_007901.1 hypothetical protein 192187 3960021 Rfer_4427 Rhodoferax ferrireducens T118 hypothetical protein YP_516111.1 191825 R 338969 CDS YP_516112.1 89885914 3960022 complement(193054..195408) 1 NC_007901.1 hypothetical protein 195408 3960022 Rfer_4428 Rhodoferax ferrireducens T118 hypothetical protein YP_516112.1 193054 R 338969 CDS YP_516113.1 89885915 3960023 complement(195423..195647) 1 NC_007901.1 hypothetical protein 195647 3960023 Rfer_4429 Rhodoferax ferrireducens T118 hypothetical protein YP_516113.1 195423 R 338969 CDS YP_516114.1 89885916 3960024 complement(195650..198313) 1 NC_007901.1 XRE family transcriptional regulator 198313 3960024 Rfer_4430 Rhodoferax ferrireducens T118 XRE family transcriptional regulator YP_516114.1 195650 R 338969 CDS YP_516115.1 89885917 3960025 complement(198792..199121) 1 NC_007901.1 hypothetical protein 199121 3960025 Rfer_4431 Rhodoferax ferrireducens T118 hypothetical protein YP_516115.1 198792 R 338969 CDS YP_516116.1 89885918 3960026 complement(199150..199416) 1 NC_007901.1 hypothetical protein 199416 3960026 Rfer_4432 Rhodoferax ferrireducens T118 hypothetical protein YP_516116.1 199150 R 338969 CDS YP_516117.1 89885919 3960027 complement(199429..199782) 1 NC_007901.1 hypothetical protein 199782 3960027 Rfer_4433 Rhodoferax ferrireducens T118 hypothetical protein YP_516117.1 199429 R 338969 CDS YP_516118.1 89885920 3960028 complement(199794..200174) 1 NC_007901.1 hypothetical protein 200174 3960028 Rfer_4434 Rhodoferax ferrireducens T118 hypothetical protein YP_516118.1 199794 R 338969 CDS YP_516119.1 89885921 3960029 complement(200359..200598) 1 NC_007901.1 hypothetical protein 200598 3960029 Rfer_4435 Rhodoferax ferrireducens T118 hypothetical protein YP_516119.1 200359 R 338969 CDS YP_516120.1 89885922 3960030 complement(200608..201030) 1 NC_007901.1 hypothetical protein 201030 3960030 Rfer_4436 Rhodoferax ferrireducens T118 hypothetical protein YP_516120.1 200608 R 338969 CDS YP_516121.1 89885923 3960031 complement(201014..202354) 1 NC_007901.1 hypothetical protein 202354 3960031 Rfer_4437 Rhodoferax ferrireducens T118 hypothetical protein YP_516121.1 201014 R 338969 CDS YP_516122.1 89885924 3960032 complement(202448..202693) 1 NC_007901.1 hypothetical protein 202693 3960032 Rfer_4438 Rhodoferax ferrireducens T118 hypothetical protein YP_516122.1 202448 R 338969 CDS YP_516123.1 89885925 3960033 complement(202703..202951) 1 NC_007901.1 hypothetical protein 202951 3960033 Rfer_4439 Rhodoferax ferrireducens T118 hypothetical protein YP_516123.1 202703 R 338969 CDS YP_516124.1 89885926 3960034 complement(202983..203297) 1 NC_007901.1 hypothetical protein 203297 3960034 Rfer_4440 Rhodoferax ferrireducens T118 hypothetical protein YP_516124.1 202983 R 338969 CDS YP_516125.1 89885927 3960035 complement(203307..203903) 1 NC_007901.1 hypothetical protein 203903 3960035 Rfer_4441 Rhodoferax ferrireducens T118 hypothetical protein YP_516125.1 203307 R 338969 CDS YP_516126.1 89885928 3960036 complement(203916..204236) 1 NC_007901.1 hypothetical protein 204236 3960036 Rfer_4442 Rhodoferax ferrireducens T118 hypothetical protein YP_516126.1 203916 R 338969 CDS YP_516127.1 89885929 3960037 complement(204246..204647) 1 NC_007901.1 hypothetical protein 204647 3960037 Rfer_4443 Rhodoferax ferrireducens T118 hypothetical protein YP_516127.1 204246 R 338969 CDS YP_516128.1 89885930 3960038 complement(204657..205100) 1 NC_007901.1 hypothetical protein 205100 3960038 Rfer_4444 Rhodoferax ferrireducens T118 hypothetical protein YP_516128.1 204657 R 338969 CDS YP_516129.1 89885931 3960039 complement(205109..205435) 1 NC_007901.1 hypothetical protein 205435 3960039 Rfer_4445 Rhodoferax ferrireducens T118 hypothetical protein YP_516129.1 205109 R 338969 CDS YP_516130.1 89885932 3959945 complement(205912..206694) 1 NC_007901.1 hypothetical protein 206694 3959945 Rfer_4446 Rhodoferax ferrireducens T118 hypothetical protein YP_516130.1 205912 R 338969 CDS YP_516131.1 89885933 3959946 complement(206706..207005) 1 NC_007901.1 hypothetical protein 207005 3959946 Rfer_4447 Rhodoferax ferrireducens T118 hypothetical protein YP_516131.1 206706 R 338969 CDS YP_516132.1 89885934 3959947 complement(207515..207790) 1 NC_007901.1 hypothetical protein 207790 3959947 Rfer_4448 Rhodoferax ferrireducens T118 hypothetical protein YP_516132.1 207515 R 338969 CDS YP_516133.1 89885935 3959948 complement(207787..208062) 1 NC_007901.1 XRE family plasmid maintenance system antidote protein 208062 3959948 Rfer_4449 Rhodoferax ferrireducens T118 XRE family plasmid maintenance system antidote protein YP_516133.1 207787 R 338969 CDS YP_516134.1 89885936 3959949 complement(208072..208350) 1 NC_007901.1 plasmid maintenance system killer 208350 3959949 Rfer_4450 Rhodoferax ferrireducens T118 plasmid maintenance system killer YP_516134.1 208072 R 338969 CDS YP_516135.1 89885937 3959950 complement(208382..209071) 1 NC_007901.1 phage integrase 209071 3959950 Rfer_4451 Rhodoferax ferrireducens T118 phage integrase YP_516135.1 208382 R 338969 CDS YP_516136.1 89885938 3959951 complement(209761..210000) 1 NC_007901.1 hypothetical protein 210000 3959951 Rfer_4452 Rhodoferax ferrireducens T118 hypothetical protein YP_516136.1 209761 R 338969 CDS YP_516137.1 89885939 3959952 complement(210008..210538) 1 NC_007901.1 hypothetical protein 210538 3959952 Rfer_4453 Rhodoferax ferrireducens T118 hypothetical protein YP_516137.1 210008 R 338969 CDS YP_516138.1 89885940 3959953 complement(210588..210878) 1 NC_007901.1 hypothetical protein 210878 3959953 Rfer_4454 Rhodoferax ferrireducens T118 hypothetical protein YP_516138.1 210588 R 338969 CDS YP_516139.1 89885941 3959954 complement(210875..211540) 1 NC_007901.1 hypothetical protein 211540 3959954 Rfer_4455 Rhodoferax ferrireducens T118 hypothetical protein YP_516139.1 210875 R 338969 CDS YP_516140.1 89885942 3959955 complement(211928..212212) 1 NC_007901.1 hypothetical protein 212212 3959955 Rfer_4456 Rhodoferax ferrireducens T118 hypothetical protein YP_516140.1 211928 R 338969 CDS YP_516141.1 89885943 3959956 complement(212209..212976) 1 NC_007901.1 hypothetical protein 212976 3959956 Rfer_4457 Rhodoferax ferrireducens T118 hypothetical protein YP_516141.1 212209 R 338969 CDS YP_516142.1 89885944 3959957 complement(213035..213355) 1 NC_007901.1 hypothetical protein 213355 3959957 Rfer_4458 Rhodoferax ferrireducens T118 hypothetical protein YP_516142.1 213035 R 338969 CDS YP_516143.1 89885945 3959958 complement(213345..213761) 1 NC_007901.1 hypothetical protein 213761 3959958 Rfer_4459 Rhodoferax ferrireducens T118 hypothetical protein YP_516143.1 213345 R 338969 CDS YP_516144.1 89885946 3959959 complement(214389..214760) 1 NC_007901.1 hypothetical protein 214760 3959959 Rfer_4460 Rhodoferax ferrireducens T118 hypothetical protein YP_516144.1 214389 R 338969 CDS YP_516145.1 89885947 3959960 complement(215200..215493) 1 NC_007901.1 hypothetical protein 215493 3959960 Rfer_4461 Rhodoferax ferrireducens T118 hypothetical protein YP_516145.1 215200 R 338969 CDS YP_516146.1 89885948 3959961 complement(216140..216478) 1 NC_007901.1 hypothetical protein 216478 3959961 Rfer_4462 Rhodoferax ferrireducens T118 hypothetical protein YP_516146.1 216140 R 338969 CDS YP_516147.1 89885949 3959962 complement(216907..217554) 1 NC_007901.1 hypothetical protein 217554 3959962 Rfer_4463 Rhodoferax ferrireducens T118 hypothetical protein YP_516147.1 216907 R 338969 CDS YP_516148.1 89885950 3959963 218104..218517 1 NC_007901.1 hypothetical protein 218517 3959963 Rfer_4464 Rhodoferax ferrireducens T118 hypothetical protein YP_516148.1 218104 D 338969 CDS YP_516149.1 89885951 3959964 218514..219023 1 NC_007901.1 hypothetical protein 219023 3959964 Rfer_4465 Rhodoferax ferrireducens T118 hypothetical protein YP_516149.1 218514 D 338969 CDS YP_516150.1 89885952 3959965 219027..219458 1 NC_007901.1 hypothetical protein 219458 3959965 Rfer_4466 Rhodoferax ferrireducens T118 hypothetical protein YP_516150.1 219027 D 338969 CDS YP_516151.1 89885953 3959966 219455..221203 1 NC_007901.1 SNF2-related 221203 3959966 Rfer_4467 Rhodoferax ferrireducens T118 SNF2-related YP_516151.1 219455 D 338969 CDS YP_516152.1 89885954 3959967 221200..221715 1 NC_007901.1 hypothetical protein 221715 3959967 Rfer_4468 Rhodoferax ferrireducens T118 hypothetical protein YP_516152.1 221200 D 338969 CDS YP_516153.1 89885955 3959968 221753..223687 1 NC_007901.1 hypothetical protein 223687 3959968 Rfer_4469 Rhodoferax ferrireducens T118 hypothetical protein YP_516153.1 221753 D 338969 CDS YP_516154.1 89885956 3959969 223684..223983 1 NC_007901.1 hypothetical protein 223983 3959969 Rfer_4470 Rhodoferax ferrireducens T118 hypothetical protein YP_516154.1 223684 D 338969 CDS YP_516155.1 89885957 3959970 224123..227479 1 NC_007901.1 hypothetical protein 227479 3959970 Rfer_4471 Rhodoferax ferrireducens T118 hypothetical protein YP_516155.1 224123 D 338969 CDS YP_516156.1 89885958 3959971 227485..228531 1 NC_007901.1 phage Gp37Gp68 228531 3959971 Rfer_4472 Rhodoferax ferrireducens T118 phage Gp37Gp68 YP_516156.1 227485 D 338969 CDS YP_516157.1 89885959 3959972 228563..229528 1 NC_007901.1 hypothetical protein 229528 3959972 Rfer_4473 Rhodoferax ferrireducens T118 hypothetical protein YP_516157.1 228563 D 338969 CDS YP_516158.1 89885960 3959973 229547..230008 1 NC_007901.1 membrane-bound metal-dependent hydrolase 230008 3959973 Rfer_4474 Rhodoferax ferrireducens T118 membrane-bound metal-dependent hydrolase YP_516158.1 229547 D 338969 CDS YP_516159.1 89885961 3959974 230067..230789 1 NC_007901.1 hypothetical protein 230789 3959974 Rfer_4475 Rhodoferax ferrireducens T118 hypothetical protein YP_516159.1 230067 D 338969 CDS YP_516160.1 89885962 3959975 230891..234598 1 NC_007901.1 hypothetical protein 234598 3959975 Rfer_4476 Rhodoferax ferrireducens T118 hypothetical protein YP_516160.1 230891 D 338969 CDS YP_516161.1 89885963 3959976 234585..235250 1 NC_007901.1 hypothetical protein 235250 3959976 Rfer_4477 Rhodoferax ferrireducens T118 hypothetical protein YP_516161.1 234585 D 338969 CDS YP_516162.1 89885964 3959977 235247..236488 1 NC_007901.1 hypothetical protein 236488 3959977 Rfer_4478 Rhodoferax ferrireducens T118 hypothetical protein YP_516162.1 235247 D 338969 CDS YP_516163.1 89885965 3959978 236569..237285 1 NC_007901.1 hypothetical protein 237285 3959978 Rfer_4479 Rhodoferax ferrireducens T118 hypothetical protein YP_516163.1 236569 D 338969 CDS YP_516164.1 89885966 3959980 237606..238856 1 NC_007901.1 DNA methylase N-4/N-6 238856 3959980 Rfer_4481 Rhodoferax ferrireducens T118 DNA methylase N-4/N-6 YP_516164.1 237606 D 338969 CDS YP_516165.1 89885967 3959981 238990..239436 1 NC_007901.1 hypothetical protein 239436 3959981 Rfer_4482 Rhodoferax ferrireducens T118 hypothetical protein YP_516165.1 238990 D 338969 CDS YP_516166.1 89885968 3959982 239438..240118 1 NC_007901.1 hypothetical protein 240118 3959982 Rfer_4483 Rhodoferax ferrireducens T118 hypothetical protein YP_516166.1 239438 D 338969 CDS YP_516167.1 89885969 3959983 240422..241171 1 NC_007901.1 hypothetical protein 241171 3959983 Rfer_4484 Rhodoferax ferrireducens T118 hypothetical protein YP_516167.1 240422 D 338969 CDS YP_516168.1 89885970 3959984 complement(241319..241912) 1 NC_007901.1 hypothetical protein 241912 3959984 Rfer_4485 Rhodoferax ferrireducens T118 hypothetical protein YP_516168.1 241319 R 338969 CDS YP_516169.1 89885971 3959985 complement(242157..243761) 1 NC_007901.1 hypothetical protein 243761 3959985 Rfer_4486 Rhodoferax ferrireducens T118 hypothetical protein YP_516169.1 242157 R 338969 CDS YP_516170.1 89885972 3959986 246851..247960 1 NC_007901.1 hypothetical protein 247960 3959986 Rfer_4487 Rhodoferax ferrireducens T118 hypothetical protein YP_516170.1 246851 D 338969 CDS YP_516171.1 89885973 3959987 248829..249575 1 NC_007901.1 lytic transglycosylase, catalytic 249575 3959987 Rfer_4488 Rhodoferax ferrireducens T118 lytic transglycosylase, catalytic YP_516171.1 248829 D 338969 CDS YP_516172.1 89885974 3959988 249632..250843 1 NC_007901.1 conjugal transfer protein TraB 250843 3959988 Rfer_4489 Rhodoferax ferrireducens T118 conjugal transfer protein TraB YP_516172.1 249632 D 338969 CDS YP_516173.1 89885975 3959989 251144..252202 1 NC_007901.1 allergen V5/Tpx-1-like protein 252202 3959989 Rfer_4490 Rhodoferax ferrireducens T118 allergen V5/Tpx-1-like protein YP_516173.1 251144 D 338969 CDS YP_516174.1 89885976 3959990 complement(252311..252832) 1 NC_007901.1 hypothetical protein 252832 3959990 Rfer_4491 Rhodoferax ferrireducens T118 hypothetical protein YP_516174.1 252311 R 338969 CDS YP_516175.1 89885977 3959991 complement(252892..254463) 1 NC_007901.1 methylation 254463 3959991 Rfer_4492 Rhodoferax ferrireducens T118 methylation YP_516175.1 252892 R 338969 CDS YP_516176.1 89885978 3959992 complement(254487..255713) 1 NC_007901.1 type II secretion system protein E 255713 3959992 Rfer_4493 Rhodoferax ferrireducens T118 type II secretion system protein E YP_516176.1 254487 R 338969 CDS YP_516177.1 89885979 3959993 complement(255756..256328) 1 NC_007901.1 methylation 256328 3959993 Rfer_4494 Rhodoferax ferrireducens T118 methylation YP_516177.1 255756 R 338969 CDS YP_516178.1 89885980 3959994 complement(256390..257445) 1 NC_007901.1 hypothetical protein 257445 3959994 Rfer_4495 Rhodoferax ferrireducens T118 hypothetical protein YP_516178.1 256390 R 338969 CDS YP_521294.1 89898823 3960237 7..1419 1 NC_007908.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1419 dnaA 3960237 dnaA Rhodoferax ferrireducens T118 chromosomal replication initiation protein YP_521294.1 7 D 338969 CDS YP_521295.1 89898824 3960238 1515..2618 1 NC_007908.1 DNA polymerase III subunit beta 2618 3960238 Rfer_0002 Rhodoferax ferrireducens T118 DNA polymerase III subunit beta YP_521295.1 1515 D 338969 CDS YP_521296.1 89898825 3960239 2723..5335 1 NC_007908.1 DNA gyrase subunit B 5335 3960239 Rfer_0003 Rhodoferax ferrireducens T118 DNA gyrase subunit B YP_521296.1 2723 D 338969 CDS YP_521297.1 89898826 3960240 complement(5397..5825) 1 NC_007908.1 signal-transduction protein 5825 3960240 Rfer_0004 Rhodoferax ferrireducens T118 signal-transduction protein YP_521297.1 5397 R 338969 CDS YP_521298.1 89898827 3960241 6309..7871 1 NC_007908.1 diguanylate cyclase 7871 3960241 Rfer_0005 Rhodoferax ferrireducens T118 diguanylate cyclase YP_521298.1 6309 D 338969 CDS YP_521299.1 89898828 3960242 7888..8466 1 NC_007908.1 NnrU 8466 3960242 Rfer_0006 Rhodoferax ferrireducens T118 NnrU YP_521299.1 7888 D 338969 CDS YP_521300.1 89898829 3960243 8487..11159 1 NC_007908.1 GCN5-like protein N-acetyltransferase 11159 3960243 Rfer_0007 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_521300.1 8487 D 338969 CDS YP_521301.1 89898830 3960244 complement(11152..11364) 1 NC_007908.1 hypothetical protein 11364 3960244 Rfer_0008 Rhodoferax ferrireducens T118 hypothetical protein YP_521301.1 11152 R 338969 CDS YP_521302.1 89898831 3960245 complement(11364..12215) 1 NC_007908.1 integral membrane protein 12215 3960245 Rfer_0009 Rhodoferax ferrireducens T118 integral membrane protein YP_521302.1 11364 R 338969 CDS YP_521303.1 89898832 3960246 12308..12673 1 NC_007908.1 glutaredoxin 12673 3960246 Rfer_0010 Rhodoferax ferrireducens T118 glutaredoxin YP_521303.1 12308 D 338969 CDS YP_521304.1 89898833 3960247 complement(12743..13288) 1 NC_007908.1 hypothetical protein 13288 3960247 Rfer_0011 Rhodoferax ferrireducens T118 hypothetical protein YP_521304.1 12743 R 338969 CDS YP_521305.1 89898834 3960248 13460..14371 1 NC_007908.1 Required for efficient pilin antigenic variation; recombination associated protein 14371 rdgC 3960248 rdgC Rhodoferax ferrireducens T118 recombination associated protein YP_521305.1 13460 D 338969 CDS YP_521306.1 89898835 3960249 complement(14571..15326) 1 NC_007908.1 GntR family transcriptional regulator 15326 3960249 Rfer_0013 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_521306.1 14571 R 338969 CDS YP_521307.1 89898836 3960250 15516..16868 1 NC_007908.1 fumarate lyase 16868 3960250 Rfer_0014 Rhodoferax ferrireducens T118 fumarate lyase YP_521307.1 15516 D 338969 CDS YP_521308.1 89898837 3960251 16906..18333 1 NC_007908.1 anion transporter 18333 3960251 Rfer_0015 Rhodoferax ferrireducens T118 anion transporter YP_521308.1 16906 D 338969 CDS YP_521309.1 89898838 3960252 18731..19351 1 NC_007908.1 TetR family transcriptional regulator 19351 3960252 Rfer_0016 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_521309.1 18731 D 338969 CDS YP_521310.1 89898839 3960253 19454..20614 1 NC_007908.1 iron-containing alcohol dehydrogenase 20614 3960253 Rfer_0017 Rhodoferax ferrireducens T118 iron-containing alcohol dehydrogenase YP_521310.1 19454 D 338969 CDS YP_521311.1 89898840 3960254 20653..21687 1 NC_007908.1 zinc-binding alcohol dehydrogenase 21687 3960254 Rfer_0018 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_521311.1 20653 D 338969 CDS YP_521312.1 89898841 3960255 21742..22434 1 NC_007908.1 ThiJ/PfpI 22434 3960255 Rfer_0019 Rhodoferax ferrireducens T118 ThiJ/PfpI YP_521312.1 21742 D 338969 CDS YP_521313.1 89898842 3960256 22508..23584 1 NC_007908.1 hypothetical protein 23584 3960256 Rfer_0020 Rhodoferax ferrireducens T118 hypothetical protein YP_521313.1 22508 D 338969 CDS YP_521314.1 89898843 3960450 complement(23634..23831) 1 NC_007908.1 hypothetical protein 23831 3960450 Rfer_0021 Rhodoferax ferrireducens T118 hypothetical protein YP_521314.1 23634 R 338969 CDS YP_521315.1 89898844 3960451 complement(23927..24616) 1 NC_007908.1 Crp/FNR family transcriptional regulator 24616 3960451 Rfer_0022 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_521315.1 23927 R 338969 CDS YP_521316.1 89898845 3960452 complement(24678..25397) 1 NC_007908.1 MerR family transcriptional regulator 25397 3960452 Rfer_0023 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_521316.1 24678 R 338969 CDS YP_521317.1 89898846 3960453 25444..27717 1 NC_007908.1 heavy metal translocating P-type ATPase 27717 3960453 Rfer_0024 Rhodoferax ferrireducens T118 heavy metal translocating P-type ATPase YP_521317.1 25444 D 338969 CDS YP_521318.1 89898847 3960454 complement(27784..28506) 1 NC_007908.1 hypothetical protein 28506 3960454 Rfer_0025 Rhodoferax ferrireducens T118 hypothetical protein YP_521318.1 27784 R 338969 CDS YP_521319.1 89898848 3960455 complement(28503..29048) 1 NC_007908.1 hypothetical protein 29048 3960455 Rfer_0026 Rhodoferax ferrireducens T118 hypothetical protein YP_521319.1 28503 R 338969 CDS YP_521320.1 89898849 3960456 complement(29130..29516) 1 NC_007908.1 hypothetical protein 29516 3960456 Rfer_0027 Rhodoferax ferrireducens T118 hypothetical protein YP_521320.1 29130 R 338969 CDS YP_521321.1 89898850 3960457 complement(29673..32813) 1 NC_007908.1 HsdR family type I site-specific deoxyribonuclease 32813 3960457 Rfer_0028 Rhodoferax ferrireducens T118 HsdR family type I site-specific deoxyribonuclease YP_521321.1 29673 R 338969 CDS YP_521322.1 89898851 3960458 complement(32826..33959) 1 NC_007908.1 hypothetical protein 33959 3960458 Rfer_0029 Rhodoferax ferrireducens T118 hypothetical protein YP_521322.1 32826 R 338969 CDS YP_521323.1 89898852 3960459 complement(33956..35299) 1 NC_007908.1 restriction modification system DNA specificity subunit 35299 3960459 Rfer_0030 Rhodoferax ferrireducens T118 restriction modification system DNA specificity subunit YP_521323.1 33956 R 338969 CDS YP_521324.1 89898853 3960460 complement(35292..36422) 1 NC_007908.1 hypothetical protein 36422 3960460 Rfer_0031 Rhodoferax ferrireducens T118 hypothetical protein YP_521324.1 35292 R 338969 CDS YP_521325.1 89898854 3960461 complement(36476..38110) 1 NC_007908.1 N-6 DNA methylase 38110 3960461 Rfer_0032 Rhodoferax ferrireducens T118 N-6 DNA methylase YP_521325.1 36476 R 338969 CDS YP_521326.1 89898855 3960462 complement(38073..38348) 1 NC_007908.1 hypothetical protein 38348 3960462 Rfer_0033 Rhodoferax ferrireducens T118 hypothetical protein YP_521326.1 38073 R 338969 CDS YP_521327.1 89898856 3960463 complement(38578..38838) 1 NC_007908.1 cell division topological specificity factor MinE 38838 3960463 Rfer_0034 Rhodoferax ferrireducens T118 cell division topological specificity factor MinE YP_521327.1 38578 R 338969 CDS YP_521328.1 89898857 3960464 complement(38843..39658) 1 NC_007908.1 septum site-determining protein MinD 39658 3960464 Rfer_0035 Rhodoferax ferrireducens T118 septum site-determining protein MinD YP_521328.1 38843 R 338969 CDS YP_521329.1 89898858 3960465 complement(39734..40519) 1 NC_007908.1 septum site-determining protein MinC 40519 3960465 Rfer_0036 Rhodoferax ferrireducens T118 septum site-determining protein MinC YP_521329.1 39734 R 338969 CDS YP_521330.1 89898859 3960466 complement(41353..42753) 1 NC_007908.1 hypothetical protein 42753 3960466 Rfer_0037 Rhodoferax ferrireducens T118 hypothetical protein YP_521330.1 41353 R 338969 CDS YP_521331.1 89898860 3960467 complement(42750..43217) 1 NC_007908.1 cytochrome C biogenesis protein 43217 3960467 Rfer_0038 Rhodoferax ferrireducens T118 cytochrome C biogenesis protein YP_521331.1 42750 R 338969 CDS YP_521332.1 89898861 3960468 complement(43214..43738) 1 NC_007908.1 periplasmic protein thiol 43738 3960468 Rfer_0039 Rhodoferax ferrireducens T118 periplasmic protein thiol YP_521332.1 43214 R 338969 CDS YP_521333.1 89898862 3960295 complement(43735..45708) 1 NC_007908.1 cytochrome c-type biogenesis protein CcmF 45708 3960295 Rfer_0040 Rhodoferax ferrireducens T118 cytochrome c-type biogenesis protein CcmF YP_521333.1 43735 R 338969 CDS YP_521334.1 89898863 3960296 complement(45719..46162) 1 NC_007908.1 CcmE/CycJ protein 46162 3960296 Rfer_0041 Rhodoferax ferrireducens T118 CcmE/CycJ protein YP_521334.1 45719 R 338969 CDS YP_521335.1 89898864 3960297 complement(46159..46338) 1 NC_007908.1 heme exporter protein CcmD 46338 3960297 Rfer_0042 Rhodoferax ferrireducens T118 heme exporter protein CcmD YP_521335.1 46159 R 338969 CDS YP_521336.1 89898865 3960298 complement(46325..47065) 1 NC_007908.1 heme exporter protein CcmC 47065 3960298 Rfer_0043 Rhodoferax ferrireducens T118 heme exporter protein CcmC YP_521336.1 46325 R 338969 CDS YP_521337.1 89898866 3960299 complement(47062..47745) 1 NC_007908.1 heme exporter protein CcmB 47745 3960299 Rfer_0044 Rhodoferax ferrireducens T118 heme exporter protein CcmB YP_521337.1 47062 R 338969 CDS YP_521338.1 89898867 3960300 complement(47742..48374) 1 NC_007908.1 heme exporter protein CcmA 48374 3960300 Rfer_0045 Rhodoferax ferrireducens T118 heme exporter protein CcmA YP_521338.1 47742 R 338969 CDS YP_521339.1 89898868 3960301 48665..49135 1 NC_007908.1 cytochrome c family protein 49135 3960301 Rfer_0046 Rhodoferax ferrireducens T118 cytochrome c family protein YP_521339.1 48665 D 338969 CDS YP_521340.1 89898869 3960302 complement(49239..49847) 1 NC_007908.1 glutathione S-transferase-like protein 49847 3960302 Rfer_0047 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_521340.1 49239 R 338969 CDS YP_521341.1 89898870 3960303 complement(50035..51486) 1 NC_007908.1 aldehyde dehydrogenase 51486 3960303 Rfer_0048 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_521341.1 50035 R 338969 CDS YP_521342.1 89898871 3960304 51689..53728 1 NC_007908.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 53728 3960304 Rfer_0049 Rhodoferax ferrireducens T118 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_521342.1 51689 D 338969 CDS YP_521343.1 89898872 3960305 53728..54402 1 NC_007908.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 54402 gidB 3960305 gidB Rhodoferax ferrireducens T118 16S rRNA methyltransferase GidB YP_521343.1 53728 D 338969 CDS YP_521344.1 89898873 3960306 54656..55441 1 NC_007908.1 cobyrinic acid a,c-diamide synthase 55441 3960306 Rfer_0051 Rhodoferax ferrireducens T118 cobyrinic acid a,c-diamide synthase YP_521344.1 54656 D 338969 CDS YP_521345.1 89898874 3960307 55517..56152 1 NC_007908.1 hypothetical protein 56152 3960307 Rfer_0052 Rhodoferax ferrireducens T118 hypothetical protein YP_521345.1 55517 D 338969 CDS YP_521346.1 89898875 3960308 56171..57112 1 NC_007908.1 parB-like protein partition proteins 57112 3960308 Rfer_0053 Rhodoferax ferrireducens T118 parB-like protein partition proteins YP_521346.1 56171 D 338969 CDS YP_521347.1 89898876 3960309 57198..57941 1 NC_007908.1 type 12 methyltransferase 57941 3960309 Rfer_0054 Rhodoferax ferrireducens T118 type 12 methyltransferase YP_521347.1 57198 D 338969 CDS YP_521348.1 89898877 3960310 58043..58789 1 NC_007908.1 metal dependent phosphohydrolase 58789 3960310 Rfer_0055 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_521348.1 58043 D 338969 CDS YP_521349.1 89898878 3960311 58963..60168 1 NC_007908.1 putative lipoprotein 60168 3960311 Rfer_0056 Rhodoferax ferrireducens T118 putative lipoprotein YP_521349.1 58963 D 338969 CDS YP_521350.1 89898879 3960312 60184..60690 1 NC_007908.1 hypothetical protein 60690 3960312 Rfer_0057 Rhodoferax ferrireducens T118 hypothetical protein YP_521350.1 60184 D 338969 CDS YP_521351.1 89898880 3960313 complement(60804..61241) 1 NC_007908.1 hypothetical protein 61241 3960313 Rfer_0058 Rhodoferax ferrireducens T118 hypothetical protein YP_521351.1 60804 R 338969 CDS YP_521352.1 89898881 3960314 complement(61322..62839) 1 NC_007908.1 hypothetical protein 62839 3960314 Rfer_0059 Rhodoferax ferrireducens T118 hypothetical protein YP_521352.1 61322 R 338969 CDS YP_521353.1 89898882 3962272 complement(62970..63674) 1 NC_007908.1 Crp/FNR family transcriptional regulator 63674 3962272 Rfer_0060 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_521353.1 62970 R 338969 CDS YP_521354.1 89898883 3962273 complement(63721..64143) 1 NC_007908.1 phenylacetic acid degradation-like protein 64143 3962273 Rfer_0061 Rhodoferax ferrireducens T118 phenylacetic acid degradation-like protein YP_521354.1 63721 R 338969 CDS YP_521355.1 89898884 3962274 complement(64247..65950) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 65950 3962274 Rfer_0062 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_521355.1 64247 R 338969 CDS YP_521356.1 89898885 3962275 66180..66437 1 NC_007908.1 hypothetical protein 66437 3962275 Rfer_0063 Rhodoferax ferrireducens T118 hypothetical protein YP_521356.1 66180 D 338969 CDS YP_521357.1 89898886 3962276 66445..68331 1 NC_007908.1 ferrous iron transport protein B 68331 3962276 Rfer_0064 Rhodoferax ferrireducens T118 ferrous iron transport protein B YP_521357.1 66445 D 338969 CDS YP_521358.1 89898887 3962277 68336..68626 1 NC_007908.1 hypothetical protein 68626 3962277 Rfer_0065 Rhodoferax ferrireducens T118 hypothetical protein YP_521358.1 68336 D 338969 CDS YP_521359.1 89898888 3962278 complement(68690..69757) 1 NC_007908.1 putative ammonia monooxygenase 69757 3962278 Rfer_0066 Rhodoferax ferrireducens T118 putative ammonia monooxygenase YP_521359.1 68690 R 338969 CDS YP_521360.1 89898889 3962279 69848..70219 1 NC_007908.1 hypothetical protein 70219 3962279 Rfer_0067 Rhodoferax ferrireducens T118 hypothetical protein YP_521360.1 69848 D 338969 CDS YP_521361.1 89898890 3962280 70250..70840 1 NC_007908.1 putative lipoprotein transmembrane 70840 3962280 Rfer_0068 Rhodoferax ferrireducens T118 putative lipoprotein transmembrane YP_521361.1 70250 D 338969 CDS YP_521362.1 89898891 3962281 complement(70953..72239) 1 NC_007908.1 uracil-xanthine permease 72239 3962281 Rfer_0069 Rhodoferax ferrireducens T118 uracil-xanthine permease YP_521362.1 70953 R 338969 CDS YP_521363.1 89898892 3962282 complement(72547..72801) 1 NC_007908.1 17 kDa surface antigen 72801 3962282 Rfer_0070 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_521363.1 72547 R 338969 CDS YP_521364.1 89898893 3962283 complement(72818..73465) 1 NC_007908.1 hypothetical protein 73465 3962283 Rfer_0071 Rhodoferax ferrireducens T118 hypothetical protein YP_521364.1 72818 R 338969 CDS YP_521365.1 89898894 3962284 complement(73485..73958) 1 NC_007908.1 17 kDa surface antigen 73958 3962284 Rfer_0072 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_521365.1 73485 R 338969 CDS YP_521366.1 89898895 3962285 complement(73992..74582) 1 NC_007908.1 transport protein 74582 3962285 Rfer_0073 Rhodoferax ferrireducens T118 transport protein YP_521366.1 73992 R 338969 CDS YP_521367.1 89898896 3962286 74835..75050 1 NC_007908.1 hypothetical protein 75050 3962286 Rfer_0074 Rhodoferax ferrireducens T118 hypothetical protein YP_521367.1 74835 D 338969 CDS YP_521368.1 89898897 3962287 75237..76511 1 NC_007908.1 hypothetical protein 76511 3962287 Rfer_0075 Rhodoferax ferrireducens T118 hypothetical protein YP_521368.1 75237 D 338969 CDS YP_521369.1 89898898 3962288 complement(76523..77026) 1 NC_007908.1 CinA-like protein 77026 3962288 Rfer_0076 Rhodoferax ferrireducens T118 CinA-like protein YP_521369.1 76523 R 338969 CDS YP_521370.1 89898899 3962289 complement(77023..77604) 1 NC_007908.1 phosphatidylglycerophosphatase A 77604 3962289 Rfer_0077 Rhodoferax ferrireducens T118 phosphatidylglycerophosphatase A YP_521370.1 77023 R 338969 CDS YP_521371.1 89898900 3962290 complement(77643..79031) 1 NC_007908.1 phospholipase D/transphosphatidylase 79031 3962290 Rfer_0078 Rhodoferax ferrireducens T118 phospholipase D/transphosphatidylase YP_521371.1 77643 R 338969 CDS YP_521372.1 89898901 3960080 complement(79028..81037) 1 NC_007908.1 AsmA 81037 3960080 Rfer_0079 Rhodoferax ferrireducens T118 AsmA YP_521372.1 79028 R 338969 CDS YP_521373.1 89898902 3960081 complement(81242..81565) 1 NC_007908.1 collagen triple helix protein 81565 3960081 Rfer_0080 Rhodoferax ferrireducens T118 collagen triple helix protein YP_521373.1 81242 R 338969 CDS YP_521374.1 89898903 3960082 81897..82316 1 NC_007908.1 hypothetical protein 82316 3960082 Rfer_0081 Rhodoferax ferrireducens T118 hypothetical protein YP_521374.1 81897 D 338969 CDS YP_521375.1 89898904 3960083 complement(82418..83161) 1 NC_007908.1 hypothetical protein 83161 3960083 Rfer_0082 Rhodoferax ferrireducens T118 hypothetical protein YP_521375.1 82418 R 338969 CDS YP_521376.1 89898905 3960085 84980..85756 1 NC_007908.1 ferredoxin--NADP(+) reductase 85756 3960085 Rfer_0084 Rhodoferax ferrireducens T118 ferredoxin--NADP(+) reductase YP_521376.1 84980 D 338969 CDS YP_521377.1 89898906 3960086 85846..86664 1 NC_007908.1 nucleotidyl transferase 86664 3960086 Rfer_0085 Rhodoferax ferrireducens T118 nucleotidyl transferase YP_521377.1 85846 D 338969 CDS YP_521378.1 89898907 3960087 86684..88093 1 NC_007908.1 peptidase M24 88093 3960087 Rfer_0086 Rhodoferax ferrireducens T118 peptidase M24 YP_521378.1 86684 D 338969 CDS YP_521379.1 89898908 3960088 88135..88647 1 NC_007908.1 thiol-disulfide isomerase-like protein 88647 3960088 Rfer_0087 Rhodoferax ferrireducens T118 thiol-disulfide isomerase-like protein YP_521379.1 88135 D 338969 CDS YP_521380.1 89898909 3960089 complement(88705..91500) 1 NC_007908.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 91500 3960089 Rfer_0088 Rhodoferax ferrireducens T118 pyruvate phosphate dikinase YP_521380.1 88705 R 338969 CDS YP_521381.1 89898910 3960090 complement(91596..92597) 1 NC_007908.1 proline iminopeptidase 92597 3960090 Rfer_0089 Rhodoferax ferrireducens T118 proline iminopeptidase YP_521381.1 91596 R 338969 CDS YP_521382.1 89898911 3960091 92806..93288 1 NC_007908.1 rubrerythrin 93288 3960091 Rfer_0090 Rhodoferax ferrireducens T118 rubrerythrin YP_521382.1 92806 D 338969 CDS YP_521383.1 89898912 3960092 93415..93579 1 NC_007908.1 rubredoxin-type Fe(Cys)4 protein 93579 3960092 Rfer_0091 Rhodoferax ferrireducens T118 rubredoxin-type Fe(Cys)4 protein YP_521383.1 93415 D 338969 CDS YP_521384.1 89898913 3960093 93595..94899 1 NC_007908.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 94899 3960093 Rfer_0092 Rhodoferax ferrireducens T118 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_521384.1 93595 D 338969 CDS YP_521385.1 89898914 3960094 94994..97303 1 NC_007908.1 phosphate acetyltransferase; NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 97303 3960094 Rfer_0093 Rhodoferax ferrireducens T118 malic enzyme YP_521385.1 94994 D 338969 CDS YP_521386.1 89898915 3960095 97461..97853 1 NC_007908.1 guanine-specific ribonuclease N1 and T1 97853 3960095 Rfer_0094 Rhodoferax ferrireducens T118 guanine-specific ribonuclease N1 and T1 YP_521386.1 97461 D 338969 CDS YP_521387.1 89898916 3960096 97888..98337 1 NC_007908.1 hypothetical protein 98337 3960096 Rfer_0095 Rhodoferax ferrireducens T118 hypothetical protein YP_521387.1 97888 D 338969 CDS YP_521388.1 89898917 3960097 complement(98638..99423) 1 NC_007908.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 99423 ksgA 3960097 ksgA Rhodoferax ferrireducens T118 dimethyladenosine transferase YP_521388.1 98638 R 338969 CDS YP_521389.1 89898918 3960098 complement(99450..100829) 1 NC_007908.1 PpiC-type peptidyl-prolyl cis-trans isomerase 100829 3960098 Rfer_0097 Rhodoferax ferrireducens T118 PpiC-type peptidyl-prolyl cis-trans isomerase YP_521389.1 99450 R 338969 CDS YP_521390.1 89898919 3960099 complement(100836..103235) 1 NC_007908.1 organic solvent tolerance protein 103235 3960099 Rfer_0098 Rhodoferax ferrireducens T118 organic solvent tolerance protein YP_521390.1 100836 R 338969 CDS YP_521391.1 89898920 3962800 103322..104410 1 NC_007908.1 aminoglycoside phosphotransferase 104410 3962800 Rfer_0099 Rhodoferax ferrireducens T118 aminoglycoside phosphotransferase YP_521391.1 103322 D 338969 CDS YP_521392.1 89898921 3962801 complement(104452..104991) 1 NC_007908.1 hypothetical protein 104991 3962801 Rfer_0100 Rhodoferax ferrireducens T118 hypothetical protein YP_521392.1 104452 R 338969 CDS YP_521393.1 89898922 3962802 complement(105077..105526) 1 NC_007908.1 hypothetical protein 105526 3962802 Rfer_0101 Rhodoferax ferrireducens T118 hypothetical protein YP_521393.1 105077 R 338969 CDS YP_521394.1 89898923 3962803 105632..106264 1 NC_007908.1 hypothetical protein 106264 3962803 Rfer_0102 Rhodoferax ferrireducens T118 hypothetical protein YP_521394.1 105632 D 338969 CDS YP_521395.1 89898924 3962804 106284..107204 1 NC_007908.1 hypothetical protein 107204 3962804 Rfer_0103 Rhodoferax ferrireducens T118 hypothetical protein YP_521395.1 106284 D 338969 CDS YP_521396.1 89898925 3962805 107204..107725 1 NC_007908.1 hypothetical protein 107725 3962805 Rfer_0104 Rhodoferax ferrireducens T118 hypothetical protein YP_521396.1 107204 D 338969 CDS YP_521397.1 89898926 3962806 complement(107821..108237) 1 NC_007908.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 108237 atpC 3962806 atpC Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit epsilon YP_521397.1 107821 R 338969 CDS YP_521398.1 89898927 3962807 complement(108239..109663) 1 NC_007908.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 109663 3962807 Rfer_0106 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit beta YP_521398.1 108239 R 338969 CDS YP_521399.1 89898928 3962808 complement(109715..110611) 1 NC_007908.1 ATP synthase F1 subunit gamma 110611 3962808 Rfer_0107 Rhodoferax ferrireducens T118 ATP synthase F1 subunit gamma YP_521399.1 109715 R 338969 CDS YP_521400.1 89898929 3962809 complement(110641..112194) 1 NC_007908.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 112194 3962809 Rfer_0108 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit alpha YP_521400.1 110641 R 338969 CDS YP_521401.1 89898930 3962810 complement(112245..112775) 1 NC_007908.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 112775 3962810 Rfer_0109 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit delta YP_521401.1 112245 R 338969 CDS YP_521402.1 89898931 3962811 complement(112786..113256) 1 NC_007908.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 113256 3962811 Rfer_0110 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit B YP_521402.1 112786 R 338969 CDS YP_521403.1 89898932 3962812 complement(113294..113539) 1 NC_007908.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 113539 3962812 Rfer_0111 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit C YP_521403.1 113294 R 338969 CDS YP_521404.1 89898933 3962813 complement(113596..114486) 1 NC_007908.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 114486 3962813 Rfer_0112 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit A YP_521404.1 113596 R 338969 CDS YP_521405.1 89898934 3962814 complement(114501..114980) 1 NC_007908.1 putative ATP synthase protein I 114980 3962814 Rfer_0113 Rhodoferax ferrireducens T118 putative ATP synthase protein I YP_521405.1 114501 R 338969 CDS YP_521406.1 89898935 3962815 115452..116717 1 NC_007908.1 hypothetical protein 116717 3962815 Rfer_0114 Rhodoferax ferrireducens T118 hypothetical protein YP_521406.1 115452 D 338969 CDS YP_521407.1 89898936 3962816 complement(116778..117476) 1 NC_007908.1 DSBA oxidoreductase 117476 3962816 Rfer_0115 Rhodoferax ferrireducens T118 DSBA oxidoreductase YP_521407.1 116778 R 338969 CDS YP_521408.1 89898937 3962817 117774..118970 1 NC_007908.1 diguanylate cyclase 118970 3962817 Rfer_0116 Rhodoferax ferrireducens T118 diguanylate cyclase YP_521408.1 117774 D 338969 CDS YP_521409.1 89898938 3962818 119521..121602 1 NC_007908.1 AAA ATPase 121602 3962818 Rfer_0117 Rhodoferax ferrireducens T118 AAA ATPase YP_521409.1 119521 D 338969 CDS YP_521410.1 89898939 3960217 complement(121603..121983) 1 NC_007908.1 hypothetical protein 121983 3960217 Rfer_0118 Rhodoferax ferrireducens T118 hypothetical protein YP_521410.1 121603 R 338969 CDS YP_521411.1 89898940 3960218 122006..122905 1 NC_007908.1 LysR family transcriptional regulator 122905 3960218 Rfer_0119 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521411.1 122006 D 338969 CDS YP_521412.1 89898941 3960219 complement(123047..124606) 1 NC_007908.1 Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 124606 3960219 Rfer_0120 Rhodoferax ferrireducens T118 Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer YP_521412.1 123047 R 338969 CDS YP_521413.1 89898942 3960220 124739..125845 1 NC_007908.1 zinc-binding alcohol dehydrogenase 125845 3960220 Rfer_0121 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_521413.1 124739 D 338969 CDS YP_521414.1 89898943 3960221 125845..126711 1 NC_007908.1 carboxylesterase 126711 3960221 Rfer_0122 Rhodoferax ferrireducens T118 carboxylesterase YP_521414.1 125845 D 338969 CDS YP_521415.1 89898944 3960222 complement(126815..127846) 1 NC_007908.1 inner-membrane translocator 127846 3960222 Rfer_0123 Rhodoferax ferrireducens T118 inner-membrane translocator YP_521415.1 126815 R 338969 CDS YP_521416.1 89898945 3960223 complement(127875..129368) 1 NC_007908.1 ABC transporter-like protein 129368 3960223 Rfer_0124 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521416.1 127875 R 338969 CDS YP_521417.1 89898946 3960224 complement(129460..130530) 1 NC_007908.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 130530 3960224 Rfer_0125 Rhodoferax ferrireducens T118 TMAO reductase system periplasmic protein TorT YP_521417.1 129460 R 338969 CDS YP_521418.1 89898947 3960225 complement(130638..131615) 1 NC_007908.1 allophanate hydrolase 131615 3960225 Rfer_0126 Rhodoferax ferrireducens T118 allophanate hydrolase YP_521418.1 130638 R 338969 CDS YP_521419.1 89898948 3960226 complement(131605..132489) 1 NC_007908.1 allophanate hydrolase subunit 1 132489 3960226 Rfer_0127 Rhodoferax ferrireducens T118 allophanate hydrolase subunit 1 YP_521419.1 131605 R 338969 CDS YP_521420.1 89898949 3960228 complement(133964..134197) 1 NC_007908.1 hypothetical protein 134197 3960228 Rfer_0129 Rhodoferax ferrireducens T118 hypothetical protein YP_521420.1 133964 R 338969 CDS YP_521421.1 89898950 3960229 complement(134275..135102) 1 NC_007908.1 hypothetical protein 135102 3960229 Rfer_0130 Rhodoferax ferrireducens T118 hypothetical protein YP_521421.1 134275 R 338969 CDS YP_521422.1 89898951 3960230 135237..136160 1 NC_007908.1 LysR family transcriptional regulator 136160 3960230 Rfer_0131 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521422.1 135237 D 338969 CDS YP_521423.1 89898952 3960231 complement(136207..137691) 1 NC_007908.1 carboxylyase-like protein 137691 3960231 Rfer_0132 Rhodoferax ferrireducens T118 carboxylyase-like protein YP_521423.1 136207 R 338969 CDS YP_521424.1 89898953 3960232 complement(137732..138301) 1 NC_007908.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 138301 3960232 Rfer_0133 Rhodoferax ferrireducens T118 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_521424.1 137732 R 338969 CDS YP_521425.1 89898954 3960233 complement(138298..138780) 1 NC_007908.1 hypothetical protein 138780 3960233 Rfer_0134 Rhodoferax ferrireducens T118 hypothetical protein YP_521425.1 138298 R 338969 CDS YP_521426.1 89898955 3960234 complement(138799..139707) 1 NC_007908.1 peptidase U32 139707 3960234 Rfer_0135 Rhodoferax ferrireducens T118 peptidase U32 YP_521426.1 138799 R 338969 CDS YP_521427.1 89898956 3960235 complement(139829..140926) 1 NC_007908.1 peptidase U32 140926 3960235 Rfer_0136 Rhodoferax ferrireducens T118 peptidase U32 YP_521427.1 139829 R 338969 CDS YP_521428.1 89898957 3960236 complement(141058..141354) 1 NC_007908.1 hypothetical protein 141354 3960236 Rfer_0137 Rhodoferax ferrireducens T118 hypothetical protein YP_521428.1 141058 R 338969 CDS YP_521429.1 89898958 3960547 complement(141488..142135) 1 NC_007908.1 transferase hexapeptide protein 142135 3960547 Rfer_0138 Rhodoferax ferrireducens T118 transferase hexapeptide protein YP_521429.1 141488 R 338969 CDS YP_521430.1 89898959 3960548 complement(142208..143350) 1 NC_007908.1 phosphonate metabolism PhnM 143350 3960548 Rfer_0139 Rhodoferax ferrireducens T118 phosphonate metabolism PhnM YP_521430.1 142208 R 338969 CDS YP_521431.1 89898960 3960549 complement(143370..144068) 1 NC_007908.1 phosphonate C-P lyase system, PhnL 144068 3960549 Rfer_0140 Rhodoferax ferrireducens T118 phosphonate C-P lyase system, PhnL YP_521431.1 143370 R 338969 CDS YP_521432.1 89898961 3960550 complement(144065..144949) 1 NC_007908.1 phosphonate C-P lyase system protein PhnK 144949 phnK 3960550 phnK Rhodoferax ferrireducens T118 phosphonate C-P lyase system protein PhnK YP_521432.1 144065 R 338969 CDS YP_521433.1 89898962 3960551 complement(144946..145869) 1 NC_007908.1 phosphonate metabolism PhnJ 145869 3960551 Rfer_0142 Rhodoferax ferrireducens T118 phosphonate metabolism PhnJ YP_521433.1 144946 R 338969 CDS YP_521434.1 89898963 3960552 complement(145866..147050) 1 NC_007908.1 phosphonate metabolism 147050 3960552 Rfer_0143 Rhodoferax ferrireducens T118 phosphonate metabolism YP_521434.1 145866 R 338969 CDS YP_521435.1 89898964 3960553 complement(147140..147739) 1 NC_007908.1 phosphonate metabolism 147739 3960553 Rfer_0144 Rhodoferax ferrireducens T118 phosphonate metabolism YP_521435.1 147140 R 338969 CDS YP_521436.1 89898965 3960554 complement(147736..148200) 1 NC_007908.1 phosphonate metabolism PhnG 148200 3960554 Rfer_0145 Rhodoferax ferrireducens T118 phosphonate metabolism PhnG YP_521436.1 147736 R 338969 CDS YP_521437.1 89898966 3960555 148533..149291 1 NC_007908.1 GntR family transcriptional regulator 149291 3960555 Rfer_0146 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_521437.1 148533 D 338969 CDS YP_521438.1 89898967 3960556 149288..149983 1 NC_007908.1 hypothetical protein 149983 3960556 Rfer_0147 Rhodoferax ferrireducens T118 hypothetical protein YP_521438.1 149288 D 338969 CDS YP_521439.1 89898968 3960557 149980..150537 1 NC_007908.1 phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN 150537 3960557 Rfer_0148 Rhodoferax ferrireducens T118 phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN YP_521439.1 149980 D 338969 CDS YP_521440.1 89898969 3960558 complement(150598..151086) 1 NC_007908.1 N-carbamoyl-D-amino acid hydrolase 151086 3960558 Rfer_0149 Rhodoferax ferrireducens T118 N-carbamoyl-D-amino acid hydrolase YP_521440.1 150598 R 338969 CDS YP_521441.1 89898970 3960559 complement(151079..152194) 1 NC_007908.1 putative DNA alkylation repair enzyme 152194 3960559 Rfer_0150 Rhodoferax ferrireducens T118 putative DNA alkylation repair enzyme YP_521441.1 151079 R 338969 CDS YP_521442.1 89898971 3960560 complement(152208..152903) 1 NC_007908.1 helix-turn-helix, type 11 152903 3960560 Rfer_0151 Rhodoferax ferrireducens T118 helix-turn-helix, type 11 YP_521442.1 152208 R 338969 CDS YP_521443.1 89898972 3960561 complement(152914..153213) 1 NC_007908.1 hypothetical protein 153213 3960561 Rfer_0152 Rhodoferax ferrireducens T118 hypothetical protein YP_521443.1 152914 R 338969 CDS YP_521444.1 89898973 3960562 complement(153291..153830) 1 NC_007908.1 hypothetical protein 153830 3960562 Rfer_0153 Rhodoferax ferrireducens T118 hypothetical protein YP_521444.1 153291 R 338969 CDS YP_521445.1 89898974 3960563 complement(153968..154474) 1 NC_007908.1 DinB 154474 3960563 Rfer_0154 Rhodoferax ferrireducens T118 DinB YP_521445.1 153968 R 338969 CDS YP_521446.1 89898975 3960565 complement(155317..156342) 1 NC_007908.1 hypothetical protein 156342 3960565 Rfer_0156 Rhodoferax ferrireducens T118 hypothetical protein YP_521446.1 155317 R 338969 CDS YP_521447.1 89898976 3960159 complement(156648..157613) 1 NC_007908.1 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 157613 3960159 Rfer_0157 Rhodoferax ferrireducens T118 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_521447.1 156648 R 338969 CDS YP_521448.1 89898977 3960160 complement(157597..158868) 1 NC_007908.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 158868 3960160 Rfer_0158 Rhodoferax ferrireducens T118 allantoate amidohydrolase YP_521448.1 157597 R 338969 CDS YP_521449.1 89898978 3960161 complement(158865..160097) 1 NC_007908.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 160097 3960161 Rfer_0159 Rhodoferax ferrireducens T118 diaminopropionate ammonia-lyase YP_521449.1 158865 R 338969 CDS YP_521450.1 89898979 3960162 complement(160112..160963) 1 NC_007908.1 RpiR family transcriptional regulator 160963 3960162 Rfer_0160 Rhodoferax ferrireducens T118 RpiR family transcriptional regulator YP_521450.1 160112 R 338969 CDS YP_521451.1 89898980 3960163 161181..161978 1 NC_007908.1 extracellular solute-binding protein 161978 3960163 Rfer_0161 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_521451.1 161181 D 338969 CDS YP_521452.1 89898981 3960164 162015..162677 1 NC_007908.1 amino acid ABC transporter permease 162677 3960164 Rfer_0162 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_521452.1 162015 D 338969 CDS YP_521453.1 89898982 3960165 162688..163332 1 NC_007908.1 amino acid ABC transporter permease 163332 3960165 Rfer_0163 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_521453.1 162688 D 338969 CDS YP_521454.1 89898983 3960166 163336..164094 1 NC_007908.1 ABC transporter-like protein 164094 3960166 Rfer_0164 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521454.1 163336 D 338969 CDS YP_521455.1 89898984 3960167 164145..165929 1 NC_007908.1 putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; putative bifunctional OHCU decarboxylase/allantoate amidohydrolase 165929 3960167 Rfer_0165 Rhodoferax ferrireducens T118 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase YP_521455.1 164145 D 338969 CDS YP_521456.1 89898985 3960168 165970..167193 1 NC_007908.1 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase 167193 3960168 Rfer_0166 Rhodoferax ferrireducens T118 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase YP_521456.1 165970 D 338969 CDS YP_521457.1 89898986 3960169 167332..167970 1 NC_007908.1 beta-lactamase-like protein 167970 3960169 Rfer_0167 Rhodoferax ferrireducens T118 beta-lactamase-like protein YP_521457.1 167332 D 338969 CDS YP_521458.1 89898987 3960170 168082..169398 1 NC_007908.1 hypothetical protein 169398 3960170 Rfer_0168 Rhodoferax ferrireducens T118 hypothetical protein YP_521458.1 168082 D 338969 CDS YP_521459.1 89898988 3960171 169851..170921 1 NC_007908.1 secretion protein HlyD 170921 3960171 Rfer_0169 Rhodoferax ferrireducens T118 secretion protein HlyD YP_521459.1 169851 D 338969 CDS YP_521460.1 89898989 3960172 170918..173710 1 NC_007908.1 response regulator receiver domain-containing protein 173710 3960172 Rfer_0170 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_521460.1 170918 D 338969 CDS YP_521461.1 89898990 3960173 173712..174839 1 NC_007908.1 hypothetical protein 174839 3960173 Rfer_0171 Rhodoferax ferrireducens T118 hypothetical protein YP_521461.1 173712 D 338969 CDS YP_521462.1 89898991 3960174 175009..175545 1 NC_007908.1 hypothetical protein 175545 3960174 Rfer_0172 Rhodoferax ferrireducens T118 hypothetical protein YP_521462.1 175009 D 338969 CDS YP_521463.1 89898992 3960175 175699..176055 1 NC_007908.1 hypothetical protein 176055 3960175 Rfer_0173 Rhodoferax ferrireducens T118 hypothetical protein YP_521463.1 175699 D 338969 CDS YP_521464.1 89898993 3960176 176068..176676 1 NC_007908.1 hypothetical protein 176676 3960176 Rfer_0174 Rhodoferax ferrireducens T118 hypothetical protein YP_521464.1 176068 D 338969 CDS YP_521465.1 89898994 3960177 176669..176950 1 NC_007908.1 hypothetical protein 176950 3960177 Rfer_0175 Rhodoferax ferrireducens T118 hypothetical protein YP_521465.1 176669 D 338969 CDS YP_521466.1 89898995 3961331 177400..177918 1 NC_007908.1 hypothetical protein 177918 3961331 Rfer_0177 Rhodoferax ferrireducens T118 hypothetical protein YP_521466.1 177400 D 338969 CDS YP_521467.1 89898996 3961332 177911..178387 1 NC_007908.1 MarR family transcriptional regulator 178387 3961332 Rfer_0178 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_521467.1 177911 D 338969 CDS YP_521468.1 89898997 3961333 178617..178910 1 NC_007908.1 HicA protein 178910 3961333 Rfer_0179 Rhodoferax ferrireducens T118 HicA protein YP_521468.1 178617 D 338969 CDS YP_521469.1 89898998 3961334 178907..179242 1 NC_007908.1 HicB 179242 3961334 Rfer_0180 Rhodoferax ferrireducens T118 HicB YP_521469.1 178907 D 338969 CDS YP_521470.1 89898999 3961335 complement(179328..180782) 1 NC_007908.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 180782 3961335 Rfer_0181 Rhodoferax ferrireducens T118 dihydrolipoamide dehydrogenase YP_521470.1 179328 R 338969 CDS YP_521471.1 89899000 3961336 180982..181188 1 NC_007908.1 hypothetical protein 181188 3961336 Rfer_0182 Rhodoferax ferrireducens T118 hypothetical protein YP_521471.1 180982 D 338969 CDS YP_521472.1 89899001 3961337 complement(181202..182005) 1 NC_007908.1 phosphonate ABC transporter inner membrane protein 182005 3961337 Rfer_0183 Rhodoferax ferrireducens T118 phosphonate ABC transporter inner membrane protein YP_521472.1 181202 R 338969 CDS YP_521473.1 89899002 3961338 complement(182005..182973) 1 NC_007908.1 phosphonate-binding periplasmic protein 182973 3961338 Rfer_0184 Rhodoferax ferrireducens T118 phosphonate-binding periplasmic protein YP_521473.1 182005 R 338969 CDS YP_521474.1 89899003 3961339 complement(183015..183896) 1 NC_007908.1 phosphonate ABC transporter ATP-binding 183896 3961339 Rfer_0185 Rhodoferax ferrireducens T118 phosphonate ABC transporter ATP-binding YP_521474.1 183015 R 338969 CDS YP_521475.1 89899004 3961340 183947..185218 1 NC_007908.1 major facilitator transporter 185218 3961340 Rfer_0186 Rhodoferax ferrireducens T118 major facilitator transporter YP_521475.1 183947 D 338969 CDS YP_521476.1 89899005 3961341 complement(185215..186105) 1 NC_007908.1 phage SPO1 DNA polymerase-like protein 186105 3961341 Rfer_0187 Rhodoferax ferrireducens T118 phage SPO1 DNA polymerase-like protein YP_521476.1 185215 R 338969 CDS YP_521477.1 89899006 3961342 complement(186147..186614) 1 NC_007908.1 ribosomal-protein-alanine acetyltransferase 186614 3961342 Rfer_0188 Rhodoferax ferrireducens T118 ribosomal-protein-alanine acetyltransferase YP_521477.1 186147 R 338969 CDS YP_521478.1 89899007 3961343 complement(186611..187330) 1 NC_007908.1 peptidase M22, glycoprotease 187330 3961343 Rfer_0189 Rhodoferax ferrireducens T118 peptidase M22, glycoprotease YP_521478.1 186611 R 338969 CDS YP_521479.1 89899008 3961344 complement(187418..188383) 1 NC_007908.1 hypothetical protein 188383 3961344 Rfer_0190 Rhodoferax ferrireducens T118 hypothetical protein YP_521479.1 187418 R 338969 CDS YP_521480.1 89899009 3961345 188463..189962 1 NC_007908.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 189962 3961345 Rfer_0191 Rhodoferax ferrireducens T118 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_521480.1 188463 D 338969 CDS YP_521481.1 89899010 3961346 189949..190203 1 NC_007908.1 hypothetical protein 190203 3961346 Rfer_0192 Rhodoferax ferrireducens T118 hypothetical protein YP_521481.1 189949 D 338969 CDS YP_521482.1 89899011 3961347 190357..192348 1 NC_007908.1 hypothetical protein 192348 3961347 Rfer_0193 Rhodoferax ferrireducens T118 hypothetical protein YP_521482.1 190357 D 338969 CDS YP_521483.1 89899012 3961348 192375..193058 1 NC_007908.1 OmpW 193058 3961348 Rfer_0194 Rhodoferax ferrireducens T118 OmpW YP_521483.1 192375 D 338969 CDS YP_521484.1 89899013 3961349 complement(193116..194285) 1 NC_007908.1 Sua5/YciO/YrdC/YwlC 194285 3961349 Rfer_0195 Rhodoferax ferrireducens T118 Sua5/YciO/YrdC/YwlC YP_521484.1 193116 R 338969 CDS YP_521485.1 89899014 3960179 complement(194300..195514) 1 NC_007908.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase 195514 3960179 Rfer_0196 Rhodoferax ferrireducens T118 phosphoribosylaminoimidazole carboxylase ATPase YP_521485.1 194300 R 338969 CDS YP_521486.1 89899015 3960180 complement(195511..195978) 1 NC_007908.1 phosphoribosylaminoimidazole carboxylase, catalytic subunit 195978 3960180 Rfer_0197 Rhodoferax ferrireducens T118 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_521486.1 195511 R 338969 CDS YP_521487.1 89899016 3960181 196037..197017 1 NC_007908.1 thioredoxin 197017 3960181 Rfer_0198 Rhodoferax ferrireducens T118 thioredoxin YP_521487.1 196037 D 338969 CDS YP_521488.1 89899017 3960182 complement(197046..198479) 1 NC_007908.1 Iron-sulfur cluster-binding protein 198479 3960182 Rfer_0199 Rhodoferax ferrireducens T118 Iron-sulfur cluster-binding protein YP_521488.1 197046 R 338969 CDS YP_521489.1 89899018 3960183 complement(198476..199150) 1 NC_007908.1 hypothetical protein 199150 3960183 Rfer_0200 Rhodoferax ferrireducens T118 hypothetical protein YP_521489.1 198476 R 338969 CDS YP_521490.1 89899019 3960184 complement(199147..199950) 1 NC_007908.1 hypothetical protein 199950 3960184 Rfer_0201 Rhodoferax ferrireducens T118 hypothetical protein YP_521490.1 199147 R 338969 CDS YP_521491.1 89899020 3960185 complement(200101..200874) 1 NC_007908.1 GntR-like protein 200874 3960185 Rfer_0202 Rhodoferax ferrireducens T118 GntR-like protein YP_521491.1 200101 R 338969 CDS YP_521492.1 89899021 3960186 complement(200927..201844) 1 NC_007908.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 201844 3960186 Rfer_0203 Rhodoferax ferrireducens T118 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_521492.1 200927 R 338969 CDS YP_521493.1 89899022 3960187 complement(202100..203164) 1 NC_007908.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 203164 3960187 Rfer_0204 Rhodoferax ferrireducens T118 fructose-1,6-bisphosphate aldolase YP_521493.1 202100 R 338969 CDS YP_521494.1 89899023 3960188 complement(203470..204900) 1 NC_007908.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 204900 3960188 Rfer_0205 Rhodoferax ferrireducens T118 pyruvate kinase YP_521494.1 203470 R 338969 CDS YP_521495.1 89899024 3960189 complement(205013..205666) 1 NC_007908.1 OmpA/MotB 205666 3960189 Rfer_0206 Rhodoferax ferrireducens T118 OmpA/MotB YP_521495.1 205013 R 338969 CDS YP_521496.1 89899025 3960190 complement(205907..206689) 1 NC_007908.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 206689 3960190 Rfer_0207 Rhodoferax ferrireducens T118 16S ribosomal RNA methyltransferase RsmE YP_521496.1 205907 R 338969 CDS YP_521497.1 89899026 3960191 complement(206825..207367) 1 NC_007908.1 class I cytochrome c 207367 3960191 Rfer_0208 Rhodoferax ferrireducens T118 class I cytochrome c YP_521497.1 206825 R 338969 CDS YP_521498.1 89899027 3960194 complement(207965..208678) 1 NC_007908.1 ABC transporter-like protein 208678 3960194 Rfer_0210 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521498.1 207965 R 338969 CDS YP_521499.1 89899028 3960195 complement(208680..209417) 1 NC_007908.1 ABC transporter-like protein 209417 3960195 Rfer_0211 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521499.1 208680 R 338969 CDS YP_521500.1 89899029 3960196 complement(209419..210432) 1 NC_007908.1 inner-membrane translocator 210432 3960196 Rfer_0212 Rhodoferax ferrireducens T118 inner-membrane translocator YP_521500.1 209419 R 338969 CDS YP_521501.1 89899030 3960197 complement(210447..211328) 1 NC_007908.1 inner-membrane translocator 211328 3960197 Rfer_0213 Rhodoferax ferrireducens T118 inner-membrane translocator YP_521501.1 210447 R 338969 CDS YP_521502.1 89899031 3960120 complement(211341..212522) 1 NC_007908.1 extracellular ligand-binding receptor 212522 3960120 Rfer_0214 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_521502.1 211341 R 338969 CDS YP_521503.1 89899032 3960121 complement(212519..213334) 1 NC_007908.1 alpha/beta hydrolase 213334 3960121 Rfer_0215 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_521503.1 212519 R 338969 CDS YP_521504.1 89899033 3960122 complement(213331..214929) 1 NC_007908.1 benzoate-CoA ligase family 214929 3960122 Rfer_0216 Rhodoferax ferrireducens T118 benzoate-CoA ligase family YP_521504.1 213331 R 338969 CDS YP_521505.1 89899034 3960123 complement(214978..216540) 1 NC_007908.1 aldehyde dehydrogenase 216540 3960123 Rfer_0217 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_521505.1 214978 R 338969 CDS YP_521506.1 89899035 3960124 complement(216546..217010) 1 NC_007908.1 hypothetical protein 217010 3960124 Rfer_0218 Rhodoferax ferrireducens T118 hypothetical protein YP_521506.1 216546 R 338969 CDS YP_521507.1 89899036 3960125 217100..218074 1 NC_007908.1 consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 218074 3960125 Rfer_0219 Rhodoferax ferrireducens T118 anaerobic benzoate catabolism transcriptional regulator YP_521507.1 217100 D 338969 CDS YP_521508.1 89899037 3960126 218122..219849 1 NC_007908.1 cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase 219849 3960126 Rfer_0220 Rhodoferax ferrireducens T118 benzoyl-CoA-dihydrodiol lyase YP_521508.1 218122 D 338969 CDS YP_521509.1 89899038 3960127 219922..221349 1 NC_007908.1 benzoyl-CoA oxygenase component B 221349 3960127 Rfer_0221 Rhodoferax ferrireducens T118 benzoyl-CoA oxygenase component B YP_521509.1 219922 D 338969 CDS YP_521510.1 89899039 3960128 221364..222635 1 NC_007908.1 FAD/NAD(P)-binding oxidoreductase 222635 3960128 Rfer_0222 Rhodoferax ferrireducens T118 FAD/NAD(P)-binding oxidoreductase YP_521510.1 221364 D 338969 CDS YP_521511.1 89899040 3960129 222635..223432 1 NC_007908.1 enoyl-CoA hydratase/isomerase 223432 3960129 Rfer_0223 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_521511.1 222635 D 338969 CDS YP_521512.1 89899041 3960130 223456..224937 1 NC_007908.1 3-hydroxybutyryl-CoA dehydrogenase 224937 3960130 Rfer_0224 Rhodoferax ferrireducens T118 3-hydroxybutyryl-CoA dehydrogenase YP_521512.1 223456 D 338969 CDS YP_521513.1 89899042 3960131 224934..225389 1 NC_007908.1 MaoC-like protein dehydratase 225389 3960131 Rfer_0225 Rhodoferax ferrireducens T118 MaoC-like protein dehydratase YP_521513.1 224934 D 338969 CDS YP_521514.1 89899043 3960132 225386..226588 1 NC_007908.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 226588 3960132 Rfer_0226 Rhodoferax ferrireducens T118 beta-ketoadipyl CoA thiolase YP_521514.1 225386 D 338969 CDS YP_521515.1 89899044 3960133 complement(226601..227182) 1 NC_007908.1 hemerythrin HHE cation-binding protein 227182 3960133 Rfer_0227 Rhodoferax ferrireducens T118 hemerythrin HHE cation-binding protein YP_521515.1 226601 R 338969 CDS YP_521516.1 89899045 3960134 complement(227325..228827) 1 NC_007908.1 hypothetical protein 228827 3960134 Rfer_0228 Rhodoferax ferrireducens T118 hypothetical protein YP_521516.1 227325 R 338969 CDS YP_521517.1 89899046 3960135 complement(228957..229271) 1 NC_007908.1 hypothetical protein 229271 3960135 Rfer_0229 Rhodoferax ferrireducens T118 hypothetical protein YP_521517.1 228957 R 338969 CDS YP_521518.1 89899047 3960136 complement(229420..230013) 1 NC_007908.1 transcriptional regulator 230013 3960136 Rfer_0230 Rhodoferax ferrireducens T118 transcriptional regulator YP_521518.1 229420 R 338969 CDS YP_521519.1 89899048 3960137 230160..231443 1 NC_007908.1 FAD dependent oxidoreductase 231443 3960137 Rfer_0231 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_521519.1 230160 D 338969 CDS YP_521520.1 89899049 3960138 231496..232242 1 NC_007908.1 extracellular solute-binding protein 232242 3960138 Rfer_0232 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_521520.1 231496 D 338969 CDS YP_521521.1 89899050 3962291 232263..232916 1 NC_007908.1 amino acid ABC transporter permease 232916 3962291 Rfer_0233 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_521521.1 232263 D 338969 CDS YP_521522.1 89899051 3962292 232916..233647 1 NC_007908.1 ABC transporter-like protein 233647 3962292 Rfer_0234 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521522.1 232916 D 338969 CDS YP_521523.1 89899052 3962293 233909..234439 1 NC_007908.1 AsnC family transcriptional regulator 234439 3962293 Rfer_0235 Rhodoferax ferrireducens T118 AsnC family transcriptional regulator YP_521523.1 233909 D 338969 CDS YP_521524.1 89899053 3962294 234503..235303 1 NC_007908.1 extracellular solute-binding protein 235303 3962294 Rfer_0236 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_521524.1 234503 D 338969 CDS YP_521525.1 89899054 3962295 235386..236054 1 NC_007908.1 amino acid ABC transporter permease 236054 3962295 Rfer_0237 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_521525.1 235386 D 338969 CDS YP_521526.1 89899055 3962296 236065..236715 1 NC_007908.1 amino acid ABC transporter permease 236715 3962296 Rfer_0238 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_521526.1 236065 D 338969 CDS YP_521527.1 89899056 3962297 236787..237512 1 NC_007908.1 ABC transporter-like protein 237512 3962297 Rfer_0239 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521527.1 236787 D 338969 CDS YP_521528.1 89899057 3962298 237561..238838 1 NC_007908.1 FAD dependent oxidoreductase 238838 3962298 Rfer_0240 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_521528.1 237561 D 338969 CDS YP_521529.1 89899058 3962299 238882..239595 1 NC_007908.1 hypothetical protein 239595 3962299 Rfer_0241 Rhodoferax ferrireducens T118 hypothetical protein YP_521529.1 238882 D 338969 CDS YP_521530.1 89899059 3962300 239737..240939 1 NC_007908.1 hypothetical protein 240939 3962300 Rfer_0242 Rhodoferax ferrireducens T118 hypothetical protein YP_521530.1 239737 D 338969 CDS YP_521531.1 89899060 3962301 complement(241060..241338) 1 NC_007908.1 hypothetical protein 241338 3962301 Rfer_0243 Rhodoferax ferrireducens T118 hypothetical protein YP_521531.1 241060 R 338969 CDS YP_521532.1 89899061 3962302 complement(241500..242285) 1 NC_007908.1 cytochrome c family protein 242285 3962302 Rfer_0244 Rhodoferax ferrireducens T118 cytochrome c family protein YP_521532.1 241500 R 338969 CDS YP_521533.1 89899062 3962303 242779..243378 1 NC_007908.1 hypothetical protein 243378 3962303 Rfer_0245 Rhodoferax ferrireducens T118 hypothetical protein YP_521533.1 242779 D 338969 CDS YP_521534.1 89899063 3962304 243487..244908 1 NC_007908.1 histidine kinase 244908 3962304 Rfer_0246 Rhodoferax ferrireducens T118 histidine kinase YP_521534.1 243487 D 338969 CDS YP_521535.1 89899064 3962305 244915..246318 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 246318 3962305 Rfer_0247 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_521535.1 244915 D 338969 CDS YP_521536.1 89899065 3962306 246341..247348 1 NC_007908.1 putative hydrolase transmembrane protein 247348 3962306 Rfer_0248 Rhodoferax ferrireducens T118 putative hydrolase transmembrane protein YP_521536.1 246341 D 338969 CDS YP_521537.1 89899066 3962307 complement(247380..247940) 1 NC_007908.1 hypothetical protein 247940 3962307 Rfer_0249 Rhodoferax ferrireducens T118 hypothetical protein YP_521537.1 247380 R 338969 CDS YP_521538.1 89899067 3962308 complement(247937..248677) 1 NC_007908.1 hypothetical protein 248677 3962308 Rfer_0250 Rhodoferax ferrireducens T118 hypothetical protein YP_521538.1 247937 R 338969 CDS YP_521539.1 89899068 3962309 complement(248715..249260) 1 NC_007908.1 hypothetical protein 249260 3962309 Rfer_0251 Rhodoferax ferrireducens T118 hypothetical protein YP_521539.1 248715 R 338969 CDS YP_521540.1 89899069 3962310 249684..250364 1 NC_007908.1 cytochrome c family protein 250364 3962310 Rfer_0252 Rhodoferax ferrireducens T118 cytochrome c family protein YP_521540.1 249684 D 338969 CDS YP_521541.1 89899070 3961155 250410..251522 1 NC_007908.1 hypothetical protein 251522 3961155 Rfer_0253 Rhodoferax ferrireducens T118 hypothetical protein YP_521541.1 250410 D 338969 CDS YP_521542.1 89899071 3961156 251525..252337 1 NC_007908.1 hypothetical protein 252337 3961156 Rfer_0254 Rhodoferax ferrireducens T118 hypothetical protein YP_521542.1 251525 D 338969 CDS YP_521543.1 89899072 3961157 252623..253312 1 NC_007908.1 cytochrome c family protein 253312 3961157 Rfer_0255 Rhodoferax ferrireducens T118 cytochrome c family protein YP_521543.1 252623 D 338969 CDS YP_521544.1 89899073 3961158 253580..254734 1 NC_007908.1 NHL repeat-containing protein 254734 3961158 Rfer_0256 Rhodoferax ferrireducens T118 NHL repeat-containing protein YP_521544.1 253580 D 338969 CDS YP_521545.1 89899074 3961159 254793..256850 1 NC_007908.1 hypothetical protein 256850 3961159 Rfer_0257 Rhodoferax ferrireducens T118 hypothetical protein YP_521545.1 254793 D 338969 CDS YP_521546.1 89899075 3961160 256853..257884 1 NC_007908.1 NHL repeat-containing protein 257884 3961160 Rfer_0258 Rhodoferax ferrireducens T118 NHL repeat-containing protein YP_521546.1 256853 D 338969 CDS YP_521547.1 89899076 3961161 257923..259638 1 NC_007908.1 hypothetical protein 259638 3961161 Rfer_0259 Rhodoferax ferrireducens T118 hypothetical protein YP_521547.1 257923 D 338969 CDS YP_521548.1 89899077 3961162 259727..260365 1 NC_007908.1 hypothetical protein 260365 3961162 Rfer_0260 Rhodoferax ferrireducens T118 hypothetical protein YP_521548.1 259727 D 338969 CDS YP_521549.1 89899078 3961163 complement(260475..263909) 1 NC_007908.1 hypothetical protein 263909 3961163 Rfer_0261 Rhodoferax ferrireducens T118 hypothetical protein YP_521549.1 260475 R 338969 CDS YP_521550.1 89899079 3961164 complement(264127..266178) 1 NC_007908.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 266178 3961164 Rfer_0262 Rhodoferax ferrireducens T118 phosphate acetyltransferase YP_521550.1 264127 R 338969 CDS YP_521551.1 89899080 3961165 complement(266435..266890) 1 NC_007908.1 MarR family transcriptional regulator 266890 3961165 Rfer_0263 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_521551.1 266435 R 338969 CDS YP_521552.1 89899081 3961166 complement(267006..268715) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 268715 3961166 Rfer_0264 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_521552.1 267006 R 338969 CDS YP_521553.1 89899082 3961167 complement(268733..269854) 1 NC_007908.1 porin 269854 3961167 Rfer_0265 Rhodoferax ferrireducens T118 porin YP_521553.1 268733 R 338969 CDS YP_521554.1 89899083 3961168 complement(269984..270733) 1 NC_007908.1 ABC transporter-like protein 270733 3961168 Rfer_0266 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521554.1 269984 R 338969 CDS YP_521555.1 89899084 3961169 complement(270735..272531) 1 NC_007908.1 ABC transporter-like protein 272531 3961169 Rfer_0267 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521555.1 270735 R 338969 CDS YP_521556.1 89899085 3961170 complement(272533..273570) 1 NC_007908.1 inner-membrane translocator 273570 3961170 Rfer_0268 Rhodoferax ferrireducens T118 inner-membrane translocator YP_521556.1 272533 R 338969 CDS YP_521557.1 89899086 3961171 complement(273660..274793) 1 NC_007908.1 extracellular ligand-binding receptor 274793 3961171 Rfer_0269 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_521557.1 273660 R 338969 CDS YP_521558.1 89899087 3961172 complement(274861..275277) 1 NC_007908.1 4-hydroxybenzoyl-CoA thioesterase 275277 3961172 Rfer_0270 Rhodoferax ferrireducens T118 4-hydroxybenzoyl-CoA thioesterase YP_521558.1 274861 R 338969 CDS YP_521559.1 89899088 3961173 complement(275287..276051) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 276051 3961173 Rfer_0271 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_521559.1 275287 R 338969 CDS YP_521560.1 89899089 3962133 complement(276153..277403) 1 NC_007908.1 Acetyl-CoA C-acetyltransferase 277403 3962133 Rfer_0272 Rhodoferax ferrireducens T118 Acetyl-CoA C-acetyltransferase YP_521560.1 276153 R 338969 CDS YP_521561.1 89899090 3962134 complement(277417..279276) 1 NC_007908.1 catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 279276 3962134 Rfer_0273 Rhodoferax ferrireducens T118 feruloyl-CoA synthase YP_521561.1 277417 R 338969 CDS YP_521562.1 89899091 3962135 complement(279359..280141) 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 280141 3962135 Rfer_0274 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_521562.1 279359 R 338969 CDS YP_521563.1 89899092 3962136 280255..281118 1 NC_007908.1 amidohydrolase 2 281118 3962136 Rfer_0275 Rhodoferax ferrireducens T118 amidohydrolase 2 YP_521563.1 280255 D 338969 CDS YP_521564.1 89899093 3962137 281156..281860 1 NC_007908.1 hypothetical protein 281860 3962137 Rfer_0276 Rhodoferax ferrireducens T118 hypothetical protein YP_521564.1 281156 D 338969 CDS YP_521565.1 89899094 3962138 complement(281882..282772) 1 NC_007908.1 NmrA-like protein 282772 3962138 Rfer_0277 Rhodoferax ferrireducens T118 NmrA-like protein YP_521565.1 281882 R 338969 CDS YP_521566.1 89899095 3962139 282960..283346 1 NC_007908.1 putative transcriptional regulator 283346 3962139 Rfer_0278 Rhodoferax ferrireducens T118 putative transcriptional regulator YP_521566.1 282960 D 338969 CDS YP_521567.1 89899096 3962140 283566..284042 1 NC_007908.1 MarR family transcriptional regulator 284042 3962140 Rfer_0279 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_521567.1 283566 D 338969 CDS YP_521568.1 89899097 3962141 284179..285234 1 NC_007908.1 Rieske (2Fe-2S) protein 285234 3962141 Rfer_0280 Rhodoferax ferrireducens T118 Rieske (2Fe-2S) protein YP_521568.1 284179 D 338969 CDS YP_521569.1 89899098 3962142 285245..286216 1 NC_007908.1 ferredoxin 286216 3962142 Rfer_0281 Rhodoferax ferrireducens T118 ferredoxin YP_521569.1 285245 D 338969 CDS YP_521570.1 89899099 3962143 complement(286528..287214) 1 NC_007908.1 hypothetical protein 287214 3962143 Rfer_0282 Rhodoferax ferrireducens T118 hypothetical protein YP_521570.1 286528 R 338969 CDS YP_521571.1 89899100 3962144 287482..287922 1 NC_007908.1 MarR family transcriptional regulator 287922 3962144 Rfer_0283 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_521571.1 287482 D 338969 CDS YP_521572.1 89899101 3962145 287927..288817 1 NC_007908.1 hypothetical protein 288817 3962145 Rfer_0284 Rhodoferax ferrireducens T118 hypothetical protein YP_521572.1 287927 D 338969 CDS YP_521573.1 89899102 3962146 288839..289435 1 NC_007908.1 hypothetical protein 289435 3962146 Rfer_0285 Rhodoferax ferrireducens T118 hypothetical protein YP_521573.1 288839 D 338969 CDS YP_521574.1 89899103 3962149 290698..291870 1 NC_007908.1 extracellular ligand-binding receptor 291870 3962149 Rfer_0288 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_521574.1 290698 D 338969 CDS YP_521575.1 89899104 3962150 291939..292811 1 NC_007908.1 inner-membrane translocator 292811 3962150 Rfer_0289 Rhodoferax ferrireducens T118 inner-membrane translocator YP_521575.1 291939 D 338969 CDS YP_521576.1 89899105 3962151 292811..293788 1 NC_007908.1 inner-membrane translocator 293788 3962151 Rfer_0290 Rhodoferax ferrireducens T118 inner-membrane translocator YP_521576.1 292811 D 338969 CDS YP_521577.1 89899106 3962152 293785..294591 1 NC_007908.1 ABC transporter-like protein 294591 3962152 Rfer_0291 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521577.1 293785 D 338969 CDS YP_521578.1 89899107 3960315 294584..295321 1 NC_007908.1 ABC transporter-like protein 295321 3960315 Rfer_0292 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521578.1 294584 D 338969 CDS YP_521579.1 89899108 3960316 295389..296012 1 NC_007908.1 hemerythrin HHE cation-binding protein 296012 3960316 Rfer_0293 Rhodoferax ferrireducens T118 hemerythrin HHE cation-binding protein YP_521579.1 295389 D 338969 CDS YP_521580.1 89899109 3960317 complement(296062..296913) 1 NC_007908.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 296913 3960317 Rfer_0294 Rhodoferax ferrireducens T118 protocatechuate 4,5-dioxygenase subunit beta YP_521580.1 296062 R 338969 CDS YP_521581.1 89899110 3960318 complement(296929..297282) 1 NC_007908.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 297282 3960318 Rfer_0295 Rhodoferax ferrireducens T118 protocatechuate 4,5-dioxygenase subunit alpha YP_521581.1 296929 R 338969 CDS YP_521582.1 89899111 3960319 297415..298338 1 NC_007908.1 LysR family transcriptional regulator 298338 3960319 Rfer_0296 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521582.1 297415 D 338969 CDS YP_521583.1 89899112 3960320 complement(298346..299269) 1 NC_007908.1 AraC family transcriptional regulator 299269 3960320 Rfer_0297 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_521583.1 298346 R 338969 CDS YP_521584.1 89899113 3960321 299379..300557 1 NC_007908.1 cytochrome P450 300557 3960321 Rfer_0298 Rhodoferax ferrireducens T118 cytochrome P450 YP_521584.1 299379 D 338969 CDS YP_521585.1 89899114 3960322 300562..300885 1 NC_007908.1 ferredoxin 300885 3960322 Rfer_0299 Rhodoferax ferrireducens T118 ferredoxin YP_521585.1 300562 D 338969 CDS YP_521586.1 89899115 3960323 300889..302124 1 NC_007908.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 302124 3960323 Rfer_0300 Rhodoferax ferrireducens T118 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_521586.1 300889 D 338969 CDS YP_521587.1 89899116 3960324 complement(302177..302497) 1 NC_007908.1 hypothetical protein 302497 3960324 Rfer_0301 Rhodoferax ferrireducens T118 hypothetical protein YP_521587.1 302177 R 338969 CDS YP_521588.1 89899117 3960325 complement(302713..303717) 1 NC_007908.1 aldo/keto reductase 303717 3960325 Rfer_0302 Rhodoferax ferrireducens T118 aldo/keto reductase YP_521588.1 302713 R 338969 CDS YP_521589.1 89899118 3960326 303859..304545 1 NC_007908.1 TetR family transcriptional regulator 304545 3960326 Rfer_0303 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_521589.1 303859 D 338969 CDS YP_521590.1 89899119 3960327 304645..305646 1 NC_007908.1 zinc-binding alcohol dehydrogenase 305646 3960327 Rfer_0304 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_521590.1 304645 D 338969 CDS YP_521591.1 89899120 3960328 305681..306385 1 NC_007908.1 short chain dehydrogenase 306385 3960328 Rfer_0305 Rhodoferax ferrireducens T118 short chain dehydrogenase YP_521591.1 305681 D 338969 CDS YP_521592.1 89899121 3960329 306423..307499 1 NC_007908.1 NADH:flavin oxidoreductase/NADH oxidase 307499 3960329 Rfer_0306 Rhodoferax ferrireducens T118 NADH:flavin oxidoreductase/NADH oxidase YP_521592.1 306423 D 338969 CDS YP_521593.1 89899122 3960330 307517..308485 1 NC_007908.1 alpha/beta hydrolase 308485 3960330 Rfer_0307 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_521593.1 307517 D 338969 CDS YP_521594.1 89899123 3960331 308539..309339 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 309339 3960331 Rfer_0308 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_521594.1 308539 D 338969 CDS YP_521595.1 89899124 3960332 309384..310370 1 NC_007908.1 zinc-binding alcohol dehydrogenase 310370 3960332 Rfer_0309 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_521595.1 309384 D 338969 CDS YP_521596.1 89899125 3960333 310357..311211 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 311211 3960333 Rfer_0310 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_521596.1 310357 D 338969 CDS YP_521597.1 89899126 3961272 311249..312094 1 NC_007908.1 alpha/beta hydrolase 312094 3961272 Rfer_0311 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_521597.1 311249 D 338969 CDS YP_521598.1 89899127 3961273 312148..312546 1 NC_007908.1 hypothetical protein 312546 3961273 Rfer_0312 Rhodoferax ferrireducens T118 hypothetical protein YP_521598.1 312148 D 338969 CDS YP_521599.1 89899128 3961274 312554..313798 1 NC_007908.1 NADH:flavin oxidoreductase/NADH oxidase 313798 3961274 Rfer_0313 Rhodoferax ferrireducens T118 NADH:flavin oxidoreductase/NADH oxidase YP_521599.1 312554 D 338969 CDS YP_521600.1 89899129 3961275 313865..315076 1 NC_007908.1 major facilitator transporter 315076 3961275 Rfer_0314 Rhodoferax ferrireducens T118 major facilitator transporter YP_521600.1 313865 D 338969 CDS YP_521601.1 89899130 3961276 315154..315717 1 NC_007908.1 phenylacetic acid degradation-like protein 315717 3961276 Rfer_0315 Rhodoferax ferrireducens T118 phenylacetic acid degradation-like protein YP_521601.1 315154 D 338969 CDS YP_521602.1 89899131 3961277 316023..316151 1 NC_007908.1 hypothetical protein 316151 3961277 Rfer_0316 Rhodoferax ferrireducens T118 hypothetical protein YP_521602.1 316023 D 338969 CDS YP_521603.1 89899132 3961279 complement(316348..317961) 1 NC_007908.1 glucose-methanol-choline oxidoreductase 317961 3961279 Rfer_0318 Rhodoferax ferrireducens T118 glucose-methanol-choline oxidoreductase YP_521603.1 316348 R 338969 CDS YP_521604.1 89899133 3961280 complement(318065..318766) 1 NC_007908.1 OmpW 318766 3961280 Rfer_0319 Rhodoferax ferrireducens T118 OmpW YP_521604.1 318065 R 338969 CDS YP_521605.1 89899134 3961281 complement(318867..319670) 1 NC_007908.1 short chain dehydrogenase 319670 3961281 Rfer_0320 Rhodoferax ferrireducens T118 short chain dehydrogenase YP_521605.1 318867 R 338969 CDS YP_521606.1 89899135 3961282 complement(319673..321184) 1 NC_007908.1 AMP-dependent synthetase and ligase 321184 3961282 Rfer_0321 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_521606.1 319673 R 338969 CDS YP_521607.1 89899136 3961283 complement(321278..321745) 1 NC_007908.1 hypothetical protein 321745 3961283 Rfer_0322 Rhodoferax ferrireducens T118 hypothetical protein YP_521607.1 321278 R 338969 CDS YP_521608.1 89899137 3961284 complement(321747..322697) 1 NC_007908.1 alpha/beta hydrolase 322697 3961284 Rfer_0323 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_521608.1 321747 R 338969 CDS YP_521609.1 89899138 3961285 complement(322694..323668) 1 NC_007908.1 enoyl-CoA hydratase/isomerase 323668 3961285 Rfer_0324 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_521609.1 322694 R 338969 CDS YP_521610.1 89899139 3961286 323822..324535 1 NC_007908.1 TetR family transcriptional regulator 324535 3961286 Rfer_0325 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_521610.1 323822 D 338969 CDS YP_521611.1 89899140 3961287 325664..326134 1 NC_007908.1 CreA 326134 3961287 Rfer_0326 Rhodoferax ferrireducens T118 CreA YP_521611.1 325664 D 338969 CDS YP_521612.1 89899141 3961288 complement(326141..327445) 1 NC_007908.1 lytic murein transglycosylase 327445 3961288 Rfer_0327 Rhodoferax ferrireducens T118 lytic murein transglycosylase YP_521612.1 326141 R 338969 CDS YP_521613.1 89899142 3961289 complement(327448..328236) 1 NC_007908.1 hypothetical protein 328236 3961289 Rfer_0328 Rhodoferax ferrireducens T118 hypothetical protein YP_521613.1 327448 R 338969 CDS YP_521614.1 89899143 3961290 complement(328325..329281) 1 NC_007908.1 oxidoreductase-like protein 329281 3961290 Rfer_0329 Rhodoferax ferrireducens T118 oxidoreductase-like protein YP_521614.1 328325 R 338969 CDS YP_521615.1 89899144 3961291 complement(329282..330163) 1 NC_007908.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 330163 3961291 Rfer_0330 Rhodoferax ferrireducens T118 protocatechuate 4,5-dioxygenase subunit beta YP_521615.1 329282 R 338969 CDS YP_521616.1 89899145 3961370 complement(330166..330609) 1 NC_007908.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 330609 3961370 Rfer_0331 Rhodoferax ferrireducens T118 protocatechuate 4,5-dioxygenase subunit alpha YP_521616.1 330166 R 338969 CDS YP_521617.1 89899146 3961371 complement(330617..331558) 1 NC_007908.1 amidohydrolase 2 331558 3961371 Rfer_0332 Rhodoferax ferrireducens T118 amidohydrolase 2 YP_521617.1 330617 R 338969 CDS YP_521618.1 89899147 3961372 331910..332434 1 NC_007908.1 hypothetical protein 332434 3961372 Rfer_0333 Rhodoferax ferrireducens T118 hypothetical protein YP_521618.1 331910 D 338969 CDS YP_521619.1 89899148 3961373 332553..333386 1 NC_007908.1 alpha/beta hydrolase 333386 3961373 Rfer_0334 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_521619.1 332553 D 338969 CDS YP_521620.1 89899149 3961374 333633..335267 1 NC_007908.1 hypothetical protein 335267 3961374 Rfer_0335 Rhodoferax ferrireducens T118 hypothetical protein YP_521620.1 333633 D 338969 CDS YP_521621.1 89899150 3961375 complement(335656..336582) 1 NC_007908.1 6-phosphogluconate dehydrogenase 336582 3961375 Rfer_0336 Rhodoferax ferrireducens T118 6-phosphogluconate dehydrogenase YP_521621.1 335656 R 338969 CDS YP_521622.1 89899151 3961376 complement(336627..337310) 1 NC_007908.1 hypothetical protein 337310 3961376 Rfer_0337 Rhodoferax ferrireducens T118 hypothetical protein YP_521622.1 336627 R 338969 CDS YP_521623.1 89899152 3961377 complement(337394..338422) 1 NC_007908.1 amidohydrolase 2 338422 3961377 Rfer_0338 Rhodoferax ferrireducens T118 amidohydrolase 2 YP_521623.1 337394 R 338969 CDS YP_521624.1 89899153 3961378 complement(338499..339704) 1 NC_007908.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 339704 3961378 Rfer_0339 Rhodoferax ferrireducens T118 4-hydroxybenzoate 3-monooxygenase YP_521624.1 338499 R 338969 CDS YP_521625.1 89899154 3961379 complement(339778..340488) 1 NC_007908.1 putative ABC transporter periplasmic molybdate-binding protein 340488 3961379 Rfer_0340 Rhodoferax ferrireducens T118 putative ABC transporter periplasmic molybdate-binding protein YP_521625.1 339778 R 338969 CDS YP_521626.1 89899155 3961380 340563..341504 1 NC_007908.1 LysR family transcriptional regulator 341504 3961380 Rfer_0341 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521626.1 340563 D 338969 CDS YP_521627.1 89899156 3961381 341657..342703 1 NC_007908.1 aldo/keto reductase 342703 3961381 Rfer_0342 Rhodoferax ferrireducens T118 aldo/keto reductase YP_521627.1 341657 D 338969 CDS YP_521628.1 89899157 3961382 342770..343639 1 NC_007908.1 hypothetical protein 343639 3961382 Rfer_0343 Rhodoferax ferrireducens T118 hypothetical protein YP_521628.1 342770 D 338969 CDS YP_521629.1 89899158 3961383 343667..344866 1 NC_007908.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 344866 3961383 Rfer_0344 Rhodoferax ferrireducens T118 threonine dehydratase YP_521629.1 343667 D 338969 CDS YP_521630.1 89899159 3961384 344882..345097 1 NC_007908.1 hypothetical protein 345097 3961384 Rfer_0345 Rhodoferax ferrireducens T118 hypothetical protein YP_521630.1 344882 D 338969 CDS YP_521631.1 89899160 3961385 345267..346187 1 NC_007908.1 catalyzes the formation of putrescine from agmatine; agmatinase 346187 3961385 Rfer_0346 Rhodoferax ferrireducens T118 agmatinase YP_521631.1 345267 D 338969 CDS YP_521632.1 89899161 3961386 346200..347501 1 NC_007908.1 FAD dependent oxidoreductase 347501 3961386 Rfer_0347 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_521632.1 346200 D 338969 CDS YP_521633.1 89899162 3961387 complement(347496..348983) 1 NC_007908.1 GntR family transcriptional regulator 348983 3961387 Rfer_0348 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_521633.1 347496 R 338969 CDS YP_521634.1 89899163 3961388 349070..349891 1 NC_007908.1 peptidase C26 349891 3961388 Rfer_0349 Rhodoferax ferrireducens T118 peptidase C26 YP_521634.1 349070 D 338969 CDS YP_521635.1 89899164 3962477 349914..351281 1 NC_007908.1 glutamate--ammonia ligase 351281 3962477 Rfer_0350 Rhodoferax ferrireducens T118 glutamate--ammonia ligase YP_521635.1 349914 D 338969 CDS YP_521636.1 89899165 3962478 351343..352779 1 NC_007908.1 putative aminotransferase 352779 3962478 Rfer_0351 Rhodoferax ferrireducens T118 putative aminotransferase YP_521636.1 351343 D 338969 CDS YP_521637.1 89899166 3962479 352870..354039 1 NC_007908.1 extracellular solute-binding protein 354039 3962479 Rfer_0352 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_521637.1 352870 D 338969 CDS YP_521638.1 89899167 3962480 354137..355237 1 NC_007908.1 spermidine/putrescine ABC transporter ATP-binding subunit 355237 3962480 Rfer_0353 Rhodoferax ferrireducens T118 spermidine/putrescine ABC transporter ATP-binding subunit YP_521638.1 354137 D 338969 CDS YP_521639.1 89899168 3962481 355250..356167 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 356167 3962481 Rfer_0354 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_521639.1 355250 D 338969 CDS YP_521640.1 89899169 3962482 356177..357037 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 357037 3962482 Rfer_0355 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_521640.1 356177 D 338969 CDS YP_521641.1 89899170 3962483 357099..358568 1 NC_007908.1 aldehyde dehydrogenase 358568 3962483 Rfer_0356 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_521641.1 357099 D 338969 CDS YP_521642.1 89899171 3962484 358911..359345 1 NC_007908.1 hypothetical protein 359345 3962484 Rfer_0357 Rhodoferax ferrireducens T118 hypothetical protein YP_521642.1 358911 D 338969 CDS YP_521643.1 89899172 3962485 359352..360584 1 NC_007908.1 major facilitator transporter 360584 3962485 Rfer_0358 Rhodoferax ferrireducens T118 major facilitator transporter YP_521643.1 359352 D 338969 CDS YP_521644.1 89899173 3962486 complement(360780..361451) 1 NC_007908.1 putative integral membrane protein 361451 3962486 Rfer_0359 Rhodoferax ferrireducens T118 putative integral membrane protein YP_521644.1 360780 R 338969 CDS YP_521645.1 89899174 3962487 complement(361474..361956) 1 NC_007908.1 hypothetical protein 361956 3962487 Rfer_0360 Rhodoferax ferrireducens T118 hypothetical protein YP_521645.1 361474 R 338969 CDS YP_521646.1 89899175 3962488 complement(362149..363120) 1 NC_007908.1 patatin 363120 3962488 Rfer_0361 Rhodoferax ferrireducens T118 patatin YP_521646.1 362149 R 338969 CDS YP_521647.1 89899176 3962489 complement(363177..364391) 1 NC_007908.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 364391 3962489 Rfer_0362 Rhodoferax ferrireducens T118 6-phosphofructokinase YP_521647.1 363177 R 338969 CDS YP_521648.1 89899177 3962490 364629..365120 1 NC_007908.1 hemerythrin HHE cation-binding protein 365120 3962490 Rfer_0363 Rhodoferax ferrireducens T118 hemerythrin HHE cation-binding protein YP_521648.1 364629 D 338969 CDS YP_521649.1 89899178 3962491 complement(365140..366093) 1 NC_007908.1 response regulator receiver modulated CheW protein 366093 3962491 Rfer_0364 Rhodoferax ferrireducens T118 response regulator receiver modulated CheW protein YP_521649.1 365140 R 338969 CDS YP_521650.1 89899179 3962492 complement(366160..367530) 1 NC_007908.1 MltA 367530 3962492 Rfer_0365 Rhodoferax ferrireducens T118 MltA YP_521650.1 366160 R 338969 CDS YP_521651.1 89899180 3962493 complement(367514..371659) 1 NC_007908.1 hypothetical protein 371659 3962493 Rfer_0366 Rhodoferax ferrireducens T118 hypothetical protein YP_521651.1 367514 R 338969 CDS YP_521652.1 89899181 3962494 371675..374404 1 NC_007908.1 glutamate-ammonia-ligase adenylyltransferase 374404 3962494 Rfer_0367 Rhodoferax ferrireducens T118 glutamate-ammonia-ligase adenylyltransferase YP_521652.1 371675 D 338969 CDS YP_521653.1 89899182 3962495 374558..376585 1 NC_007908.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 376585 3962495 Rfer_0368 Rhodoferax ferrireducens T118 anaerobic ribonucleoside triphosphate reductase YP_521653.1 374558 D 338969 CDS YP_521654.1 89899183 3962496 376587..376790 1 NC_007908.1 hypothetical protein 376790 3962496 Rfer_0369 Rhodoferax ferrireducens T118 hypothetical protein YP_521654.1 376587 D 338969 CDS YP_521655.1 89899184 3964271 376804..377520 1 NC_007908.1 ribonucleoside-triphosphate reductase, anaerobic-like protein 377520 3964271 Rfer_0370 Rhodoferax ferrireducens T118 ribonucleoside-triphosphate reductase, anaerobic-like protein YP_521655.1 376804 D 338969 CDS YP_521656.1 89899185 3964272 377600..378751 1 NC_007908.1 extracellular ligand-binding receptor 378751 3964272 Rfer_0371 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_521656.1 377600 D 338969 CDS YP_521657.1 89899186 3964274 complement(378967..380472) 1 NC_007908.1 methylmalonate-semialdehyde dehydrogenase 380472 3964274 Rfer_0372 Rhodoferax ferrireducens T118 methylmalonate-semialdehyde dehydrogenase YP_521657.1 378967 R 338969 CDS YP_521658.1 89899187 3964275 complement(380484..381833) 1 NC_007908.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 381833 3964275 Rfer_0373 Rhodoferax ferrireducens T118 beta alanine--pyruvate transaminase YP_521658.1 380484 R 338969 CDS YP_521659.1 89899188 3964276 381979..382932 1 NC_007908.1 LysR family transcriptional regulator 382932 3964276 Rfer_0374 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521659.1 381979 D 338969 CDS YP_521660.1 89899189 3964277 complement(382956..383330) 1 NC_007908.1 hypothetical protein 383330 3964277 Rfer_0375 Rhodoferax ferrireducens T118 hypothetical protein YP_521660.1 382956 R 338969 CDS YP_521661.1 89899190 3964278 complement(383437..384039) 1 NC_007908.1 hypothetical protein 384039 3964278 Rfer_0376 Rhodoferax ferrireducens T118 hypothetical protein YP_521661.1 383437 R 338969 CDS YP_521662.1 89899191 3964279 384176..385441 1 NC_007908.1 putative membrane anion transport protein 385441 3964279 Rfer_0377 Rhodoferax ferrireducens T118 putative membrane anion transport protein YP_521662.1 384176 D 338969 CDS YP_521663.1 89899192 3964280 complement(385562..386215) 1 NC_007908.1 17 kDa surface antigen 386215 3964280 Rfer_0378 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_521663.1 385562 R 338969 CDS YP_521664.1 89899193 3964281 complement(386337..389411) 1 NC_007908.1 acriflavin resistance protein 389411 3964281 Rfer_0379 Rhodoferax ferrireducens T118 acriflavin resistance protein YP_521664.1 386337 R 338969 CDS YP_521665.1 89899194 3964282 complement(389408..390610) 1 NC_007908.1 secretion protein HlyD 390610 3964282 Rfer_0380 Rhodoferax ferrireducens T118 secretion protein HlyD YP_521665.1 389408 R 338969 CDS YP_521666.1 89899195 3964283 390864..391364 1 NC_007908.1 hypothetical protein 391364 3964283 Rfer_0381 Rhodoferax ferrireducens T118 hypothetical protein YP_521666.1 390864 D 338969 CDS YP_521667.1 89899196 3964284 391417..392076 1 NC_007908.1 hypothetical protein 392076 3964284 Rfer_0382 Rhodoferax ferrireducens T118 hypothetical protein YP_521667.1 391417 D 338969 CDS YP_521668.1 89899197 3964285 complement(392077..392457) 1 NC_007908.1 glyoxalase 392457 3964285 Rfer_0383 Rhodoferax ferrireducens T118 glyoxalase YP_521668.1 392077 R 338969 CDS YP_521669.1 89899198 3964286 complement(392468..392719) 1 NC_007908.1 phosphopantetheine-binding 392719 3964286 Rfer_0384 Rhodoferax ferrireducens T118 phosphopantetheine-binding YP_521669.1 392468 R 338969 CDS YP_521670.1 89899199 3964287 complement(392716..393969) 1 NC_007908.1 branched-chain alpha-keto acid dehydrogenase subunit E2 393969 3964287 Rfer_0385 Rhodoferax ferrireducens T118 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_521670.1 392716 R 338969 CDS YP_521671.1 89899200 3964288 complement(393966..394955) 1 NC_007908.1 transketolase 394955 3964288 Rfer_0386 Rhodoferax ferrireducens T118 transketolase YP_521671.1 393966 R 338969 CDS YP_521672.1 89899201 3961601 complement(394955..395959) 1 NC_007908.1 pyruvate dehydrogenase (lipoamide) 395959 3961601 Rfer_0387 Rhodoferax ferrireducens T118 pyruvate dehydrogenase (lipoamide) YP_521672.1 394955 R 338969 CDS YP_521673.1 89899202 3961602 complement(395956..397764) 1 NC_007908.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 397764 3961602 Rfer_0388 Rhodoferax ferrireducens T118 acetyl-CoA synthetase YP_521673.1 395956 R 338969 CDS YP_521674.1 89899203 3961603 complement(397785..398237) 1 NC_007908.1 signal-transduction protein 398237 3961603 Rfer_0389 Rhodoferax ferrireducens T118 signal-transduction protein YP_521674.1 397785 R 338969 CDS YP_521675.1 89899204 3961604 complement(398245..398898) 1 NC_007908.1 transport protein 398898 3961604 Rfer_0390 Rhodoferax ferrireducens T118 transport protein YP_521675.1 398245 R 338969 CDS YP_521676.1 89899205 3961605 399063..400100 1 NC_007908.1 hypothetical protein 400100 3961605 Rfer_0391 Rhodoferax ferrireducens T118 hypothetical protein YP_521676.1 399063 D 338969 CDS YP_521677.1 89899206 3961606 complement(400069..401055) 1 NC_007908.1 ribose-phosphate pyrophosphokinase 401055 3961606 Rfer_0392 Rhodoferax ferrireducens T118 ribose-phosphate pyrophosphokinase YP_521677.1 400069 R 338969 CDS YP_521678.1 89899207 3961607 401220..401630 1 NC_007908.1 hypothetical protein 401630 3961607 Rfer_0393 Rhodoferax ferrireducens T118 hypothetical protein YP_521678.1 401220 D 338969 CDS YP_521679.1 89899208 3961608 401649..402272 1 NC_007908.1 phosphoribosyltransferase 402272 3961608 Rfer_0394 Rhodoferax ferrireducens T118 phosphoribosyltransferase YP_521679.1 401649 D 338969 CDS YP_521680.1 89899209 3961609 complement(402305..402952) 1 NC_007908.1 dienelactone hydrolase 402952 3961609 Rfer_0395 Rhodoferax ferrireducens T118 dienelactone hydrolase YP_521680.1 402305 R 338969 CDS YP_521681.1 89899210 3961610 complement(402972..404048) 1 NC_007908.1 radical SAM family protein 404048 3961610 Rfer_0396 Rhodoferax ferrireducens T118 radical SAM family protein YP_521681.1 402972 R 338969 CDS YP_521682.1 89899211 3961611 complement(404048..404689) 1 NC_007908.1 AMMECR1 domain-containing protein 404689 3961611 Rfer_0397 Rhodoferax ferrireducens T118 AMMECR1 domain-containing protein YP_521682.1 404048 R 338969 CDS YP_521683.1 89899212 3961612 complement(404670..405494) 1 NC_007908.1 hypothetical protein 405494 3961612 Rfer_0398 Rhodoferax ferrireducens T118 hypothetical protein YP_521683.1 404670 R 338969 CDS YP_521684.1 89899213 3961613 405634..406542 1 NC_007908.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 406542 3961613 Rfer_0399 Rhodoferax ferrireducens T118 chromosome replication initiation inhibitor protein YP_521684.1 405634 D 338969 CDS YP_521685.1 89899214 3961614 406565..407182 1 NC_007908.1 TetR family transcriptional regulator 407182 3961614 Rfer_0400 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_521685.1 406565 D 338969 CDS YP_521686.1 89899215 3961615 complement(407247..407669) 1 NC_007908.1 hypothetical protein 407669 3961615 Rfer_0401 Rhodoferax ferrireducens T118 hypothetical protein YP_521686.1 407247 R 338969 CDS YP_521687.1 89899216 3961616 complement(407783..408622) 1 NC_007908.1 alpha/beta hydrolase 408622 3961616 Rfer_0402 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_521687.1 407783 R 338969 CDS YP_521688.1 89899217 3961617 complement(408622..410157) 1 NC_007908.1 peptidase M20 410157 3961617 Rfer_0403 Rhodoferax ferrireducens T118 peptidase M20 YP_521688.1 408622 R 338969 CDS YP_521689.1 89899218 3961618 complement(410237..411358) 1 NC_007908.1 NADH:flavin oxidoreductase/NADH oxidase 411358 3961618 Rfer_0404 Rhodoferax ferrireducens T118 NADH:flavin oxidoreductase/NADH oxidase YP_521689.1 410237 R 338969 CDS YP_521690.1 89899219 3961619 complement(411439..412020) 1 NC_007908.1 methionine biosynthesis MetW 412020 3961619 Rfer_0405 Rhodoferax ferrireducens T118 methionine biosynthesis MetW YP_521690.1 411439 R 338969 CDS YP_521691.1 89899220 3961620 complement(412017..413159) 1 NC_007908.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 413159 metX 3961620 metX Rhodoferax ferrireducens T118 homoserine O-acetyltransferase YP_521691.1 412017 R 338969 CDS YP_521692.1 89899221 3962781 complement(413213..415174) 1 NC_007908.1 ATP-dependent DNA helicase RecQ 415174 3962781 Rfer_0407 Rhodoferax ferrireducens T118 ATP-dependent DNA helicase RecQ YP_521692.1 413213 R 338969 CDS YP_521693.1 89899222 3962782 415421..415744 1 NC_007908.1 hypothetical protein 415744 3962782 Rfer_0408 Rhodoferax ferrireducens T118 hypothetical protein YP_521693.1 415421 D 338969 CDS YP_521694.1 89899223 3962783 complement(415810..416631) 1 NC_007908.1 AraC family transcriptional regulator 416631 3962783 Rfer_0409 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_521694.1 415810 R 338969 CDS YP_521695.1 89899224 3962784 416735..417676 1 NC_007908.1 hypothetical protein 417676 3962784 Rfer_0410 Rhodoferax ferrireducens T118 hypothetical protein YP_521695.1 416735 D 338969 CDS YP_521696.1 89899225 3962785 complement(417922..421053) 1 NC_007908.1 heavy metal efflux pump CzcA 421053 3962785 Rfer_0411 Rhodoferax ferrireducens T118 heavy metal efflux pump CzcA YP_521696.1 417922 R 338969 CDS YP_521697.1 89899226 3962786 complement(421066..422679) 1 NC_007908.1 secretion protein HlyD 422679 3962786 Rfer_0412 Rhodoferax ferrireducens T118 secretion protein HlyD YP_521697.1 421066 R 338969 CDS YP_521698.1 89899227 3962787 complement(422676..423947) 1 NC_007908.1 outer membrane efflux protein 423947 3962787 Rfer_0413 Rhodoferax ferrireducens T118 outer membrane efflux protein YP_521698.1 422676 R 338969 CDS YP_521699.1 89899228 3962788 complement(423952..424608) 1 NC_007908.1 DSBA oxidoreductase 424608 3962788 Rfer_0414 Rhodoferax ferrireducens T118 DSBA oxidoreductase YP_521699.1 423952 R 338969 CDS YP_521700.1 89899229 3962789 complement(424605..425024) 1 NC_007908.1 disulfide bond formation protein DsbB 425024 3962789 Rfer_0415 Rhodoferax ferrireducens T118 disulfide bond formation protein DsbB YP_521700.1 424605 R 338969 CDS YP_521701.1 89899230 3962790 complement(425053..425403) 1 NC_007908.1 hypothetical protein 425403 3962790 Rfer_0416 Rhodoferax ferrireducens T118 hypothetical protein YP_521701.1 425053 R 338969 CDS YP_521702.1 89899231 3962791 425835..426116 1 NC_007908.1 hypothetical protein 426116 3962791 Rfer_0417 Rhodoferax ferrireducens T118 hypothetical protein YP_521702.1 425835 D 338969 CDS YP_521703.1 89899232 3962792 complement(426224..428674) 1 NC_007908.1 heavy metal translocating P-type ATPase 428674 3962792 Rfer_0418 Rhodoferax ferrireducens T118 heavy metal translocating P-type ATPase YP_521703.1 426224 R 338969 CDS YP_521704.1 89899233 3962793 complement(428717..429361) 1 NC_007908.1 hypothetical protein 429361 3962793 Rfer_0419 Rhodoferax ferrireducens T118 hypothetical protein YP_521704.1 428717 R 338969 CDS YP_521705.1 89899234 3962794 complement(429358..429639) 1 NC_007908.1 hypothetical protein 429639 3962794 Rfer_0420 Rhodoferax ferrireducens T118 hypothetical protein YP_521705.1 429358 R 338969 CDS YP_521706.1 89899235 3962795 complement(429697..430179) 1 NC_007908.1 hypothetical protein 430179 3962795 Rfer_0421 Rhodoferax ferrireducens T118 hypothetical protein YP_521706.1 429697 R 338969 CDS YP_521707.1 89899236 3962796 430626..431309 1 NC_007908.1 two component heavy metal response transcriptional regulator 431309 3962796 Rfer_0422 Rhodoferax ferrireducens T118 two component heavy metal response transcriptional regulator YP_521707.1 430626 D 338969 CDS YP_521708.1 89899237 3962797 431306..432694 1 NC_007908.1 heavy metal sensor signal transduction histidine kinase 432694 3962797 Rfer_0423 Rhodoferax ferrireducens T118 heavy metal sensor signal transduction histidine kinase YP_521708.1 431306 D 338969 CDS YP_521709.1 89899238 3962798 432858..433322 1 NC_007908.1 hypothetical protein 433322 3962798 Rfer_0424 Rhodoferax ferrireducens T118 hypothetical protein YP_521709.1 432858 D 338969 CDS YP_521710.1 89899239 3962799 complement(433434..433916) 1 NC_007908.1 hypothetical protein 433916 3962799 Rfer_0425 Rhodoferax ferrireducens T118 hypothetical protein YP_521710.1 433434 R 338969 CDS YP_521711.1 89899240 3962838 434107..434565 1 NC_007908.1 hypothetical protein 434565 3962838 Rfer_0426 Rhodoferax ferrireducens T118 hypothetical protein YP_521711.1 434107 D 338969 CDS YP_521712.1 89899241 3962839 435022..435318 1 NC_007908.1 protein kinase-like protein 435318 3962839 Rfer_0427 Rhodoferax ferrireducens T118 protein kinase-like protein YP_521712.1 435022 D 338969 CDS YP_521713.1 89899242 3962840 435321..436244 1 NC_007908.1 protein kinase-like protein 436244 3962840 Rfer_0428 Rhodoferax ferrireducens T118 protein kinase-like protein YP_521713.1 435321 D 338969 CDS YP_521714.1 89899243 3962841 436356..436691 1 NC_007908.1 heat shock protein DnaJ-like protein 436691 3962841 Rfer_0429 Rhodoferax ferrireducens T118 heat shock protein DnaJ-like protein YP_521714.1 436356 D 338969 CDS YP_521715.1 89899244 3962842 complement(436720..437631) 1 NC_007908.1 2-hydroxy-3-oxopropionate reductase 437631 3962842 Rfer_0430 Rhodoferax ferrireducens T118 2-hydroxy-3-oxopropionate reductase YP_521715.1 436720 R 338969 CDS YP_521716.1 89899245 3962845 438300..439064 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 439064 3962845 Rfer_0433 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_521716.1 438300 D 338969 CDS YP_521717.1 89899246 3962846 complement(439184..440509) 1 NC_007908.1 major facilitator transporter 440509 3962846 Rfer_0434 Rhodoferax ferrireducens T118 major facilitator transporter YP_521717.1 439184 R 338969 CDS YP_521718.1 89899247 3962847 complement(440514..441404) 1 NC_007908.1 NAD-dependent epimerase/dehydratase 441404 3962847 Rfer_0435 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_521718.1 440514 R 338969 CDS YP_521719.1 89899248 3962848 complement(441465..442124) 1 NC_007908.1 Asp/Glu racemase 442124 3962848 Rfer_0436 Rhodoferax ferrireducens T118 Asp/Glu racemase YP_521719.1 441465 R 338969 CDS YP_521720.1 89899249 3962849 complement(442155..443660) 1 NC_007908.1 ABC transporter-like protein 443660 3962849 Rfer_0437 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521720.1 442155 R 338969 CDS YP_521721.1 89899250 3962850 complement(443711..444706) 1 NC_007908.1 periplasmic-binding protein/LacI transcriptional regulator 444706 3962850 Rfer_0438 Rhodoferax ferrireducens T118 periplasmic-binding protein/LacI transcriptional regulator YP_521721.1 443711 R 338969 CDS YP_521722.1 89899251 3962851 complement(444751..445749) 1 NC_007908.1 inner-membrane translocator 445749 3962851 Rfer_0439 Rhodoferax ferrireducens T118 inner-membrane translocator YP_521722.1 444751 R 338969 CDS YP_521723.1 89899252 3962852 complement(446021..447088) 1 NC_007908.1 tartrate dehydrogenase 447088 3962852 Rfer_0440 Rhodoferax ferrireducens T118 tartrate dehydrogenase YP_521723.1 446021 R 338969 CDS YP_521724.1 89899253 3962853 447187..448128 1 NC_007908.1 LysR family transcriptional regulator 448128 3962853 Rfer_0441 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521724.1 447187 D 338969 CDS YP_521725.1 89899254 3962854 448413..449267 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 449267 3962854 Rfer_0442 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_521725.1 448413 D 338969 CDS YP_521726.1 89899255 3962855 complement(449277..450074) 1 NC_007908.1 hydroxypyruvate isomerase 450074 3962855 Rfer_0443 Rhodoferax ferrireducens T118 hydroxypyruvate isomerase YP_521726.1 449277 R 338969 CDS YP_521727.1 89899256 3962856 complement(450080..450754) 1 NC_007908.1 putative aldolase 450754 3962856 Rfer_0444 Rhodoferax ferrireducens T118 putative aldolase YP_521727.1 450080 R 338969 CDS YP_521728.1 89899257 3962857 complement(450751..452022) 1 NC_007908.1 Hrp-dependent type III effector protein 452022 3962857 Rfer_0445 Rhodoferax ferrireducens T118 Hrp-dependent type III effector protein YP_521728.1 450751 R 338969 CDS YP_521729.1 89899258 3963413 complement(452019..452909) 1 NC_007908.1 3-hydroxyisobutyrate dehydrogenase 452909 3963413 Rfer_0446 Rhodoferax ferrireducens T118 3-hydroxyisobutyrate dehydrogenase YP_521729.1 452019 R 338969 CDS YP_521730.1 89899259 3963414 complement(453032..453826) 1 NC_007908.1 GntR-like protein 453826 3963414 Rfer_0447 Rhodoferax ferrireducens T118 GntR-like protein YP_521730.1 453032 R 338969 CDS YP_521731.1 89899260 3963415 complement(453878..455155) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 455155 3963415 Rfer_0448 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_521731.1 453878 R 338969 CDS YP_521732.1 89899261 3963416 complement(455152..455646) 1 NC_007908.1 tripartite ATP-independent periplasmic transporter DctQ 455646 3963416 Rfer_0449 Rhodoferax ferrireducens T118 tripartite ATP-independent periplasmic transporter DctQ YP_521732.1 455152 R 338969 CDS YP_521733.1 89899262 3963417 complement(455735..456706) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctP 456706 3963417 Rfer_0450 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctP YP_521733.1 455735 R 338969 CDS YP_521734.1 89899263 3963418 complement(456764..457819) 1 NC_007908.1 NAD-dependent epimerase/dehydratase 457819 3963418 Rfer_0451 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_521734.1 456764 R 338969 CDS YP_521735.1 89899264 3963419 complement(457845..459287) 1 NC_007908.1 aldehyde dehydrogenase 459287 3963419 Rfer_0452 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_521735.1 457845 R 338969 CDS YP_521736.1 89899265 3963420 complement(459314..460243) 1 NC_007908.1 dihydrodipicolinate synthetase 460243 3963420 Rfer_0453 Rhodoferax ferrireducens T118 dihydrodipicolinate synthetase YP_521736.1 459314 R 338969 CDS YP_521737.1 89899266 3963421 complement(460260..461288) 1 NC_007908.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 461288 3963421 Rfer_0454 Rhodoferax ferrireducens T118 4-hydroxy-2-ketovalerate aldolase YP_521737.1 460260 R 338969 CDS YP_521738.1 89899267 3963422 complement(461303..462223) 1 NC_007908.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 462223 3963422 Rfer_0455 Rhodoferax ferrireducens T118 acetaldehyde dehydrogenase YP_521738.1 461303 R 338969 CDS YP_521739.1 89899268 3963423 complement(462257..463996) 1 NC_007908.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 463996 3963423 Rfer_0456 Rhodoferax ferrireducens T118 dihydroxy-acid dehydratase YP_521739.1 462257 R 338969 CDS YP_521740.1 89899269 3963424 464120..465106 1 NC_007908.1 LysR family transcriptional regulator 465106 3963424 Rfer_0457 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521740.1 464120 D 338969 CDS YP_521741.1 89899270 3963425 complement(465204..468317) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 468317 3963425 Rfer_0458 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_521741.1 465204 R 338969 CDS YP_521742.1 89899271 3963426 complement(468409..470265) 1 NC_007908.1 ATP-dependent DNA helicase RecQ 470265 3963426 Rfer_0459 Rhodoferax ferrireducens T118 ATP-dependent DNA helicase RecQ YP_521742.1 468409 R 338969 CDS YP_521743.1 89899272 3963427 470422..471468 1 NC_007908.1 5-methyltetrahydrofolate--homocysteine S-methyltransferase 471468 3963427 Rfer_0460 Rhodoferax ferrireducens T118 5-methyltetrahydrofolate--homocysteine S-methyltransferase YP_521743.1 470422 D 338969 CDS YP_521744.1 89899273 3963428 471491..472396 1 NC_007908.1 class IV aminotransferase 472396 3963428 Rfer_0461 Rhodoferax ferrireducens T118 class IV aminotransferase YP_521744.1 471491 D 338969 CDS YP_521745.1 89899274 3963429 472859..473620 1 NC_007908.1 ArsR family transcriptional regulator 473620 3963429 Rfer_0462 Rhodoferax ferrireducens T118 ArsR family transcriptional regulator YP_521745.1 472859 D 338969 CDS YP_521746.1 89899275 3963430 473622..473975 1 NC_007908.1 DsrE-like protein 473975 3963430 Rfer_0463 Rhodoferax ferrireducens T118 DsrE-like protein YP_521746.1 473622 D 338969 CDS YP_521747.1 89899276 3963431 474022..474159 1 NC_007908.1 cysteine desulfurase 474159 3963431 Rfer_0464 Rhodoferax ferrireducens T118 cysteine desulfurase YP_521747.1 474022 D 338969 CDS YP_521748.1 89899277 3963784 474592..475233 1 NC_007908.1 hypothetical protein 475233 3963784 Rfer_0465 Rhodoferax ferrireducens T118 hypothetical protein YP_521748.1 474592 D 338969 CDS YP_521749.1 89899278 3963785 475587..478484 1 NC_007908.1 5-methyltetrahydrofolate--homocysteine methyltransferase 478484 3963785 Rfer_0466 Rhodoferax ferrireducens T118 5-methyltetrahydrofolate--homocysteine methyltransferase YP_521749.1 475587 D 338969 CDS YP_521750.1 89899279 3963786 complement(478488..479699) 1 NC_007908.1 major facilitator transporter 479699 3963786 Rfer_0467 Rhodoferax ferrireducens T118 major facilitator transporter YP_521750.1 478488 R 338969 CDS YP_521751.1 89899280 3963787 complement(479815..480579) 1 NC_007908.1 cobyrinic acid a,c-diamide synthase 480579 3963787 Rfer_0468 Rhodoferax ferrireducens T118 cobyrinic acid a,c-diamide synthase YP_521751.1 479815 R 338969 CDS YP_521752.1 89899281 3963788 480726..483020 1 NC_007908.1 diguanylate cyclase/phosphodiesterase 483020 3963788 Rfer_0469 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_521752.1 480726 D 338969 CDS YP_521753.1 89899282 3963789 483032..485578 1 NC_007908.1 CheW protein 485578 3963789 Rfer_0470 Rhodoferax ferrireducens T118 CheW protein YP_521753.1 483032 D 338969 CDS YP_521754.1 89899283 3963790 complement(485575..487107) 1 NC_007908.1 Mg chelatase-like protein 487107 3963790 Rfer_0471 Rhodoferax ferrireducens T118 Mg chelatase-like protein YP_521754.1 485575 R 338969 CDS YP_521755.1 89899284 3963791 487365..487703 1 NC_007908.1 GlnB; GlnK; nitrogen regulatory protein P-II 487703 3963791 Rfer_0472 Rhodoferax ferrireducens T118 nitrogen regulatory protein P-II YP_521755.1 487365 D 338969 CDS YP_521756.1 89899285 3963792 487723..489291 1 NC_007908.1 ammonium transporter 489291 3963792 Rfer_0473 Rhodoferax ferrireducens T118 ammonium transporter YP_521756.1 487723 D 338969 CDS YP_521757.1 89899286 3963793 complement(489734..490618) 1 NC_007908.1 LysR family transcriptional regulator 490618 3963793 Rfer_0474 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_521757.1 489734 R 338969 CDS YP_521758.1 89899287 3963794 490720..491613 1 NC_007908.1 putative oxidoreductase protein 491613 3963794 Rfer_0475 Rhodoferax ferrireducens T118 putative oxidoreductase protein YP_521758.1 490720 D 338969 CDS YP_521759.1 89899288 3963795 491652..492716 1 NC_007908.1 NADH:flavin oxidoreductase/NADH oxidase 492716 3963795 Rfer_0476 Rhodoferax ferrireducens T118 NADH:flavin oxidoreductase/NADH oxidase YP_521759.1 491652 D 338969 CDS YP_521760.1 89899289 3963796 complement(492997..494610) 1 NC_007908.1 response regulator receiver domain-containing protein 494610 3963796 Rfer_0477 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_521760.1 492997 R 338969 CDS YP_521761.1 89899290 3963797 complement(494634..495326) 1 NC_007908.1 histidine kinase 495326 3963797 Rfer_0478 Rhodoferax ferrireducens T118 histidine kinase YP_521761.1 494634 R 338969 CDS YP_521762.1 89899291 3963798 495521..496459 1 NC_007908.1 senescence marker protein-30 (SMP-30) 496459 3963798 Rfer_0479 Rhodoferax ferrireducens T118 senescence marker protein-30 (SMP-30) YP_521762.1 495521 D 338969 CDS YP_521763.1 89899292 3963799 496510..497682 1 NC_007908.1 glycolate oxidase FAD-binding subunit 497682 glcE 3963799 glcE Rhodoferax ferrireducens T118 glycolate oxidase FAD-binding subunit YP_521763.1 496510 D 338969 CDS YP_521764.1 89899293 3963800 497660..498928 1 NC_007908.1 glycolate oxidase iron-sulfur subunit 498928 glcF 3963800 glcF Rhodoferax ferrireducens T118 glycolate oxidase iron-sulfur subunit YP_521764.1 497660 D 338969 CDS YP_521765.1 89899294 3963801 499016..500074 1 NC_007908.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 500074 3963801 Rfer_0482 Rhodoferax ferrireducens T118 phospho-2-dehydro-3-deoxyheptonate aldolase YP_521765.1 499016 D 338969 CDS YP_521766.1 89899295 3963802 500120..501019 1 NC_007908.1 lytic transglycosylase catalytic subunit 501019 3963802 Rfer_0483 Rhodoferax ferrireducens T118 lytic transglycosylase catalytic subunit YP_521766.1 500120 D 338969 CDS YP_521767.1 89899296 3963803 complement(501026..501511) 1 NC_007908.1 glutathione peroxidase 501511 3963803 Rfer_0484 Rhodoferax ferrireducens T118 glutathione peroxidase YP_521767.1 501026 R 338969 CDS YP_521768.1 89899297 3964076 complement(501619..502176) 1 NC_007908.1 hypothetical protein 502176 3964076 Rfer_0485 Rhodoferax ferrireducens T118 hypothetical protein YP_521768.1 501619 R 338969 CDS YP_521769.1 89899298 3964077 complement(502253..503191) 1 NC_007908.1 hypothetical protein 503191 3964077 Rfer_0486 Rhodoferax ferrireducens T118 hypothetical protein YP_521769.1 502253 R 338969 CDS YP_521770.1 89899299 3964078 complement(503163..504446) 1 NC_007908.1 lysophospholipid transporter LplT 504446 3964078 Rfer_0487 Rhodoferax ferrireducens T118 lysophospholipid transporter LplT YP_521770.1 503163 R 338969 CDS YP_521771.1 89899300 3964079 504569..505693 1 NC_007908.1 alanine racemase 505693 3964079 Rfer_0488 Rhodoferax ferrireducens T118 alanine racemase YP_521771.1 504569 D 338969 CDS YP_521772.1 89899301 3964080 505693..506901 1 NC_007908.1 HD-GYP domain-containing protein 506901 3964080 Rfer_0489 Rhodoferax ferrireducens T118 HD-GYP domain-containing protein YP_521772.1 505693 D 338969 CDS YP_521773.1 89899302 3964081 506981..507961 1 NC_007908.1 heat shock protein DnaJ-like protein 507961 3964081 Rfer_0490 Rhodoferax ferrireducens T118 heat shock protein DnaJ-like protein YP_521773.1 506981 D 338969 CDS YP_521774.1 89899303 3964082 507958..508314 1 NC_007908.1 hypothetical protein 508314 3964082 Rfer_0491 Rhodoferax ferrireducens T118 hypothetical protein YP_521774.1 507958 D 338969 CDS YP_521775.1 89899304 3964083 complement(508306..510879) 1 NC_007908.1 E1-E2 type ATPase 510879 3964083 Rfer_0492 Rhodoferax ferrireducens T118 E1-E2 type ATPase YP_521775.1 508306 R 338969 CDS YP_521776.1 89899305 3964084 complement(510849..513335) 1 NC_007908.1 magnesium-translocating P-type ATPase 513335 3964084 Rfer_0493 Rhodoferax ferrireducens T118 magnesium-translocating P-type ATPase YP_521776.1 510849 R 338969 CDS YP_521777.1 89899306 3964085 513638..513970 1 NC_007908.1 hypothetical protein 513970 3964085 Rfer_0494 Rhodoferax ferrireducens T118 hypothetical protein YP_521777.1 513638 D 338969 CDS YP_521778.1 89899307 3964086 complement(513880..514590) 1 NC_007908.1 HpcH/HpaI aldolase 514590 3964086 Rfer_0495 Rhodoferax ferrireducens T118 HpcH/HpaI aldolase YP_521778.1 513880 R 338969 CDS YP_521779.1 89899308 3964087 514998..515954 1 NC_007908.1 cation diffusion facilitator family transporter 515954 3964087 Rfer_0496 Rhodoferax ferrireducens T118 cation diffusion facilitator family transporter YP_521779.1 514998 D 338969 CDS YP_521780.1 89899309 3964088 516157..517329 1 NC_007908.1 FAD/NAD(P)-binding oxidoreductase 517329 3964088 Rfer_0497 Rhodoferax ferrireducens T118 FAD/NAD(P)-binding oxidoreductase YP_521780.1 516157 D 338969 CDS YP_521781.1 89899310 3964089 517335..517913 1 NC_007908.1 hypothetical protein 517913 3964089 Rfer_0498 Rhodoferax ferrireducens T118 hypothetical protein YP_521781.1 517335 D 338969 CDS YP_521782.1 89899311 3964090 517910..518647 1 NC_007908.1 hypothetical protein 518647 3964090 Rfer_0499 Rhodoferax ferrireducens T118 hypothetical protein YP_521782.1 517910 D 338969 CDS YP_521783.1 89899312 3964091 518783..520147 1 NC_007908.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 520147 3964091 Rfer_0500 Rhodoferax ferrireducens T118 DNA repair protein RadA YP_521783.1 518783 D 338969 CDS YP_521784.1 89899313 3964092 complement(520194..520820) 1 NC_007908.1 17 kDa surface antigen 520820 3964092 Rfer_0501 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_521784.1 520194 R 338969 CDS YP_521785.1 89899314 3964093 520969..521682 1 NC_007908.1 cytochrome B561 521682 3964093 Rfer_0502 Rhodoferax ferrireducens T118 cytochrome B561 YP_521785.1 520969 D 338969 CDS YP_521786.1 89899315 3964094 521756..522439 1 NC_007908.1 two component transcriptional regulator 522439 3964094 Rfer_0503 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_521786.1 521756 D 338969 CDS YP_521787.1 89899316 3963804 522436..523788 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 523788 3963804 Rfer_0504 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_521787.1 522436 D 338969 CDS YP_521788.1 89899317 3963805 523871..525274 1 NC_007908.1 hypothetical protein 525274 3963805 Rfer_0505 Rhodoferax ferrireducens T118 hypothetical protein YP_521788.1 523871 D 338969 CDS YP_521789.1 89899318 3963806 525352..526302 1 NC_007908.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 526302 3963806 Rfer_0506 Rhodoferax ferrireducens T118 branched-chain amino acid aminotransferase YP_521789.1 525352 D 338969 CDS YP_521790.1 89899319 3963807 526315..526518 1 NC_007908.1 hypothetical protein 526518 3963807 Rfer_0507 Rhodoferax ferrireducens T118 hypothetical protein YP_521790.1 526315 D 338969 CDS YP_521791.1 89899320 3963808 526589..527542 1 NC_007908.1 lipopolysaccharide heptosyltransferase II 527542 3963808 Rfer_0508 Rhodoferax ferrireducens T118 lipopolysaccharide heptosyltransferase II YP_521791.1 526589 D 338969 CDS YP_521792.1 89899321 3963809 complement(527805..529088) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 529088 3963809 Rfer_0509 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_521792.1 527805 R 338969 CDS YP_521793.1 89899322 3963810 complement(529091..529795) 1 NC_007908.1 two component transcriptional regulator 529795 3963810 Rfer_0510 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_521793.1 529091 R 338969 CDS YP_521794.1 89899323 3963811 complement(529864..532311) 1 NC_007908.1 glycogen/starch/alpha-glucan phosphorylase 532311 3963811 Rfer_0511 Rhodoferax ferrireducens T118 glycogen/starch/alpha-glucan phosphorylase YP_521794.1 529864 R 338969 CDS YP_521795.1 89899324 3963812 complement(532343..533827) 1 NC_007908.1 ADP-glucose type glycogen/starch synthase 533827 3963812 Rfer_0512 Rhodoferax ferrireducens T118 ADP-glucose type glycogen/starch synthase YP_521795.1 532343 R 338969 CDS YP_521796.1 89899325 3963813 complement(533824..535095) 1 NC_007908.1 glucose-1-phosphate adenylyltransferase 535095 3963813 Rfer_0513 Rhodoferax ferrireducens T118 glucose-1-phosphate adenylyltransferase YP_521796.1 533824 R 338969 CDS YP_521797.1 89899326 3963814 complement(535130..536668) 1 NC_007908.1 4-alpha-glucanotransferase 536668 3963814 Rfer_0514 Rhodoferax ferrireducens T118 4-alpha-glucanotransferase YP_521797.1 535130 R 338969 CDS YP_521798.1 89899327 3963815 complement(536665..538884) 1 NC_007908.1 glycogen debranching protein GlgX 538884 3963815 Rfer_0515 Rhodoferax ferrireducens T118 glycogen debranching protein GlgX YP_521798.1 536665 R 338969 CDS YP_521799.1 89899328 3963816 complement(538923..540248) 1 NC_007908.1 major facilitator transporter 540248 3963816 Rfer_0516 Rhodoferax ferrireducens T118 major facilitator transporter YP_521799.1 538923 R 338969 CDS YP_521800.1 89899329 3963817 540292..541137 1 NC_007908.1 peptidase M48, Ste24p 541137 3963817 Rfer_0517 Rhodoferax ferrireducens T118 peptidase M48, Ste24p YP_521800.1 540292 D 338969 CDS YP_521801.1 89899330 3963818 541203..542825 1 NC_007908.1 thiamine pyrophosphate enzyme-like protein 542825 3963818 Rfer_0518 Rhodoferax ferrireducens T118 thiamine pyrophosphate enzyme-like protein YP_521801.1 541203 D 338969 CDS YP_521802.1 89899331 3963819 complement(542970..544172) 1 NC_007908.1 Rh-like protein/ammonium transporter 544172 3963819 Rfer_0519 Rhodoferax ferrireducens T118 Rh-like protein/ammonium transporter YP_521802.1 542970 R 338969 CDS YP_521803.1 89899332 3963820 544383..544946 1 NC_007908.1 hypothetical protein 544946 3963820 Rfer_0520 Rhodoferax ferrireducens T118 hypothetical protein YP_521803.1 544383 D 338969 CDS YP_521804.1 89899333 3963821 complement(545013..545180) 1 NC_007908.1 hypothetical protein 545180 3963821 Rfer_0521 Rhodoferax ferrireducens T118 hypothetical protein YP_521804.1 545013 R 338969 CDS YP_521805.1 89899334 3963822 complement(545258..545611) 1 NC_007908.1 hypothetical protein 545611 3963822 Rfer_0522 Rhodoferax ferrireducens T118 hypothetical protein YP_521805.1 545258 R 338969 CDS YP_521806.1 89899335 3963823 complement(545691..547379) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 547379 3963823 Rfer_0523 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_521806.1 545691 R 338969 CDS YP_521807.1 89899336 3963863 complement(547372..548217) 1 NC_007908.1 hypothetical protein 548217 3963863 Rfer_0524 Rhodoferax ferrireducens T118 hypothetical protein YP_521807.1 547372 R 338969 CDS YP_521808.1 89899337 3963864 complement(548359..549561) 1 NC_007908.1 phospholipase 549561 3963864 Rfer_0525 Rhodoferax ferrireducens T118 phospholipase YP_521808.1 548359 R 338969 CDS YP_521809.1 89899338 3963866 551325..552383 1 NC_007908.1 porin 552383 3963866 Rfer_0527 Rhodoferax ferrireducens T118 porin YP_521809.1 551325 D 338969 CDS YP_521810.1 89899339 3963867 552646..553662 1 NC_007908.1 porin 553662 3963867 Rfer_0528 Rhodoferax ferrireducens T118 porin YP_521810.1 552646 D 338969 CDS YP_521811.1 89899340 3963868 complement(553812..554819) 1 NC_007908.1 thiamine-monophosphate kinase 554819 3963868 Rfer_0529 Rhodoferax ferrireducens T118 thiamine-monophosphate kinase YP_521811.1 553812 R 338969 CDS YP_521812.1 89899341 3963869 complement(554822..556876) 1 NC_007908.1 putative site-specific recombinase transmembrane protein 556876 3963869 Rfer_0530 Rhodoferax ferrireducens T118 putative site-specific recombinase transmembrane protein YP_521812.1 554822 R 338969 CDS YP_521813.1 89899342 3963870 complement(556888..557280) 1 NC_007908.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 557280 apaG 3963870 apaG Rhodoferax ferrireducens T118 ApaG protein YP_521813.1 556888 R 338969 CDS YP_521814.1 89899343 3963871 557358..558074 1 NC_007908.1 ribulose-phosphate 3-epimerase 558074 3963871 Rfer_0532 Rhodoferax ferrireducens T118 ribulose-phosphate 3-epimerase YP_521814.1 557358 D 338969 CDS YP_521815.1 89899344 3963872 complement(558088..558591) 1 NC_007908.1 hypothetical protein 558591 3963872 Rfer_0533 Rhodoferax ferrireducens T118 hypothetical protein YP_521815.1 558088 R 338969 CDS YP_521816.1 89899345 3963873 558642..559085 1 NC_007908.1 general secretion pathway protein G 559085 3963873 Rfer_0534 Rhodoferax ferrireducens T118 general secretion pathway protein G YP_521816.1 558642 D 338969 CDS YP_521817.1 89899346 3963874 559132..559599 1 NC_007908.1 general secretion pathway protein H 559599 3963874 Rfer_0535 Rhodoferax ferrireducens T118 general secretion pathway protein H YP_521817.1 559132 D 338969 CDS YP_521818.1 89899347 3963875 559596..559976 1 NC_007908.1 general secretion pathway protein I 559976 3963875 Rfer_0536 Rhodoferax ferrireducens T118 general secretion pathway protein I YP_521818.1 559596 D 338969 CDS YP_521819.1 89899348 3963876 559976..560656 1 NC_007908.1 methylation 560656 3963876 Rfer_0537 Rhodoferax ferrireducens T118 methylation YP_521819.1 559976 D 338969 CDS YP_521820.1 89899349 3963877 560653..561630 1 NC_007908.1 general secretion pathway protein K 561630 3963877 Rfer_0538 Rhodoferax ferrireducens T118 general secretion pathway protein K YP_521820.1 560653 D 338969 CDS YP_521821.1 89899350 3963878 561627..562886 1 NC_007908.1 hypothetical protein 562886 3963878 Rfer_0539 Rhodoferax ferrireducens T118 hypothetical protein YP_521821.1 561627 D 338969 CDS YP_521822.1 89899351 3963879 562883..563380 1 NC_007908.1 hypothetical protein 563380 3963879 Rfer_0540 Rhodoferax ferrireducens T118 hypothetical protein YP_521822.1 562883 D 338969 CDS YP_521823.1 89899352 3963880 563435..564277 1 NC_007908.1 putative general secretory pathway N transmembrane protein 564277 3963880 Rfer_0541 Rhodoferax ferrireducens T118 putative general secretory pathway N transmembrane protein YP_521823.1 563435 D 338969 CDS YP_521824.1 89899353 3963881 564284..566392 1 NC_007908.1 type II and III secretion system protein 566392 3963881 Rfer_0542 Rhodoferax ferrireducens T118 type II and III secretion system protein YP_521824.1 564284 D 338969 CDS YP_521825.1 89899354 3960731 566410..567798 1 NC_007908.1 type II secretion system protein E 567798 3960731 Rfer_0543 Rhodoferax ferrireducens T118 type II secretion system protein E YP_521825.1 566410 D 338969 CDS YP_521826.1 89899355 3960732 567813..569048 1 NC_007908.1 general secretion pathway protein F 569048 3960732 Rfer_0544 Rhodoferax ferrireducens T118 general secretion pathway protein F YP_521826.1 567813 D 338969 CDS YP_521827.1 89899356 3960733 complement(569083..570768) 1 NC_007908.1 AMP-dependent synthetase and ligase 570768 3960733 Rfer_0545 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_521827.1 569083 R 338969 CDS YP_521828.1 89899357 3960734 complement(570815..571606) 1 NC_007908.1 hypothetical protein 571606 3960734 Rfer_0546 Rhodoferax ferrireducens T118 hypothetical protein YP_521828.1 570815 R 338969 CDS YP_521829.1 89899358 3960735 571621..572127 1 NC_007908.1 hypothetical protein 572127 3960735 Rfer_0547 Rhodoferax ferrireducens T118 hypothetical protein YP_521829.1 571621 D 338969 CDS YP_521830.1 89899359 3960736 572159..573778 1 NC_007908.1 glucose-methanol-choline oxidoreductase 573778 3960736 Rfer_0548 Rhodoferax ferrireducens T118 glucose-methanol-choline oxidoreductase YP_521830.1 572159 D 338969 CDS YP_521831.1 89899360 3960737 complement(573900..574217) 1 NC_007908.1 FliE; flagellar hook-basal body complex protein 574217 3960737 Rfer_0549 Rhodoferax ferrireducens T118 flagellar hook-basal body complex protein YP_521831.1 573900 R 338969 CDS YP_521832.1 89899361 3960738 574319..576085 1 NC_007908.1 flagellar M-ring protein FliF 576085 3960738 Rfer_0550 Rhodoferax ferrireducens T118 flagellar M-ring protein FliF YP_521832.1 574319 D 338969 CDS YP_521833.1 89899362 3960739 576109..577107 1 NC_007908.1 flagellar motor switch protein FliG 577107 3960739 Rfer_0551 Rhodoferax ferrireducens T118 flagellar motor switch protein FliG YP_521833.1 576109 D 338969 CDS YP_521834.1 89899363 3960740 577110..577793 1 NC_007908.1 flagellar assembly protein FliH 577793 3960740 Rfer_0552 Rhodoferax ferrireducens T118 flagellar assembly protein FliH YP_521834.1 577110 D 338969 CDS YP_521835.1 89899364 3960741 577783..579198 1 NC_007908.1 ATPase FliI/YscN 579198 3960741 Rfer_0553 Rhodoferax ferrireducens T118 ATPase FliI/YscN YP_521835.1 577783 D 338969 CDS YP_521836.1 89899365 3960742 579195..579662 1 NC_007908.1 flagellar export FliJ 579662 3960742 Rfer_0554 Rhodoferax ferrireducens T118 flagellar export FliJ YP_521836.1 579195 D 338969 CDS YP_521837.1 89899366 3960743 579659..580843 1 NC_007908.1 flagellar hook-length control protein 580843 3960743 Rfer_0555 Rhodoferax ferrireducens T118 flagellar hook-length control protein YP_521837.1 579659 D 338969 CDS YP_521838.1 89899367 3960744 580958..581557 1 NC_007908.1 flagellar basal body-associated protein FliL 581557 3960744 Rfer_0556 Rhodoferax ferrireducens T118 flagellar basal body-associated protein FliL YP_521838.1 580958 D 338969 CDS YP_521839.1 89899368 3960745 581579..582568 1 NC_007908.1 flagellar motor switch protein FliM 582568 3960745 Rfer_0557 Rhodoferax ferrireducens T118 flagellar motor switch protein FliM YP_521839.1 581579 D 338969 CDS YP_521840.1 89899369 3960746 582573..582992 1 NC_007908.1 flagellar motor switch FliN 582992 3960746 Rfer_0558 Rhodoferax ferrireducens T118 flagellar motor switch FliN YP_521840.1 582573 D 338969 CDS YP_521841.1 89899370 3960747 582992..583315 1 NC_007908.1 hypothetical protein 583315 3960747 Rfer_0559 Rhodoferax ferrireducens T118 hypothetical protein YP_521841.1 582992 D 338969 CDS YP_521842.1 89899371 3960748 583326..584108 1 NC_007908.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 584108 fliP 3960748 fliP Rhodoferax ferrireducens T118 flagellar biosynthesis protein FliP YP_521842.1 583326 D 338969 CDS YP_521843.1 89899372 3960749 584130..584387 1 NC_007908.1 flagellar biosynthetic protein FliQ 584387 3960749 Rfer_0561 Rhodoferax ferrireducens T118 flagellar biosynthetic protein FliQ YP_521843.1 584130 D 338969 CDS YP_521844.1 89899373 3960750 584449..585171 1 NC_007908.1 flagellar biosynthetic protein FliR 585171 3960750 Rfer_0562 Rhodoferax ferrireducens T118 flagellar biosynthetic protein FliR YP_521844.1 584449 D 338969 CDS YP_521845.1 89899374 3960712 complement(585217..585846) 1 NC_007908.1 two component LuxR family transcriptional regulator 585846 3960712 Rfer_0563 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_521845.1 585217 R 338969 CDS YP_521846.1 89899375 3960713 complement(585881..587032) 1 NC_007908.1 putative signal transduction histidine kinase 587032 3960713 Rfer_0564 Rhodoferax ferrireducens T118 putative signal transduction histidine kinase YP_521846.1 585881 R 338969 CDS YP_521847.1 89899376 3960714 587149..587625 1 NC_007908.1 hypothetical protein 587625 3960714 Rfer_0565 Rhodoferax ferrireducens T118 hypothetical protein YP_521847.1 587149 D 338969 CDS YP_521848.1 89899377 3960715 587668..588030 1 NC_007908.1 response regulator receiver domain-containing protein 588030 3960715 Rfer_0566 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_521848.1 587668 D 338969 CDS YP_521849.1 89899378 3960716 588078..590267 1 NC_007908.1 CheA signal transduction histidine kinase 590267 3960716 Rfer_0567 Rhodoferax ferrireducens T118 CheA signal transduction histidine kinase YP_521849.1 588078 D 338969 CDS YP_521850.1 89899379 3960717 590292..590780 1 NC_007908.1 CheW protein 590780 3960717 Rfer_0568 Rhodoferax ferrireducens T118 CheW protein YP_521850.1 590292 D 338969 CDS YP_521851.1 89899380 3960718 590817..591713 1 NC_007908.1 MCP methyltransferase, CheR-type 591713 3960718 Rfer_0569 Rhodoferax ferrireducens T118 MCP methyltransferase, CheR-type YP_521851.1 590817 D 338969 CDS YP_521852.1 89899381 3960719 591776..592480 1 NC_007908.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 592480 3960719 Rfer_0570 Rhodoferax ferrireducens T118 chemoreceptor glutamine deamidase CheD YP_521852.1 591776 D 338969 CDS YP_521853.1 89899382 3960720 592458..593579 1 NC_007908.1 response regulator receiver modulated CheB methylesterase 593579 3960720 Rfer_0571 Rhodoferax ferrireducens T118 response regulator receiver modulated CheB methylesterase YP_521853.1 592458 D 338969 CDS YP_521854.1 89899383 3960721 complement(593580..595175) 1 NC_007908.1 glucose-methanol-choline oxidoreductase 595175 3960721 Rfer_0572 Rhodoferax ferrireducens T118 glucose-methanol-choline oxidoreductase YP_521854.1 593580 R 338969 CDS YP_521855.1 89899384 3960722 595347..595802 1 NC_007908.1 MarR family transcriptional regulator 595802 3960722 Rfer_0573 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_521855.1 595347 D 338969 CDS YP_521856.1 89899385 3960723 595878..596306 1 NC_007908.1 OsmC-like protein 596306 3960723 Rfer_0574 Rhodoferax ferrireducens T118 OsmC-like protein YP_521856.1 595878 D 338969 CDS YP_521857.1 89899386 3960724 596416..597543 1 NC_007908.1 hypothetical protein 597543 3960724 Rfer_0575 Rhodoferax ferrireducens T118 hypothetical protein YP_521857.1 596416 D 338969 CDS YP_521858.1 89899387 3960725 597627..598682 1 NC_007908.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 598682 3960725 Rfer_0576 Rhodoferax ferrireducens T118 serine/threonine protein kinase YP_521858.1 597627 D 338969 CDS YP_521859.1 89899388 3960726 complement(598582..600012) 1 NC_007908.1 multi-sensor signal transduction histidine kinase 600012 3960726 Rfer_0577 Rhodoferax ferrireducens T118 multi-sensor signal transduction histidine kinase YP_521859.1 598582 R 338969 CDS YP_521860.1 89899389 3960727 complement(600058..600780) 1 NC_007908.1 two component transcriptional regulator 600780 3960727 Rfer_0578 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_521860.1 600058 R 338969 CDS YP_521861.1 89899390 3960728 complement(600777..601478) 1 NC_007908.1 phosphate uptake regulator PhoU 601478 3960728 Rfer_0579 Rhodoferax ferrireducens T118 phosphate uptake regulator PhoU YP_521861.1 600777 R 338969 CDS YP_521862.1 89899391 3960729 complement(601488..602267) 1 NC_007908.1 phosphate ABC transporter permease 602267 3960729 Rfer_0580 Rhodoferax ferrireducens T118 phosphate ABC transporter permease YP_521862.1 601488 R 338969 CDS YP_521863.1 89899392 3960730 complement(602280..603164) 1 NC_007908.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 603164 pstA 3960730 pstA Rhodoferax ferrireducens T118 phosphate transporter permease subunit PtsA YP_521863.1 602280 R 338969 CDS YP_521864.1 89899393 3960100 complement(603161..604192) 1 NC_007908.1 phosphate ABC transporter permease 604192 3960100 Rfer_0582 Rhodoferax ferrireducens T118 phosphate ABC transporter permease YP_521864.1 603161 R 338969 CDS YP_521865.1 89899394 3960101 complement(604235..605278) 1 NC_007908.1 periplasmic phosphate-binding protein 605278 3960101 Rfer_0583 Rhodoferax ferrireducens T118 periplasmic phosphate-binding protein YP_521865.1 604235 R 338969 CDS YP_521866.1 89899395 3960102 complement(605575..606567) 1 NC_007908.1 AraC family transcriptional regulator 606567 3960102 Rfer_0584 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_521866.1 605575 R 338969 CDS YP_521867.1 89899396 3960103 606772..608175 1 NC_007908.1 amino acid permease-associated protein 608175 3960103 Rfer_0585 Rhodoferax ferrireducens T118 amino acid permease-associated protein YP_521867.1 606772 D 338969 CDS YP_521868.1 89899397 3960104 608186..609583 1 NC_007908.1 ethanolamine ammonia lyase large subunit 609583 3960104 Rfer_0586 Rhodoferax ferrireducens T118 ethanolamine ammonia lyase large subunit YP_521868.1 608186 D 338969 CDS YP_521869.1 89899398 3960105 609590..610453 1 NC_007908.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 610453 3960105 Rfer_0587 Rhodoferax ferrireducens T118 ethanolamine ammonia-lyase small subunit YP_521869.1 609590 D 338969 CDS YP_521870.1 89899399 3960106 610522..611733 1 NC_007908.1 putative lipoprotein 611733 3960106 Rfer_0588 Rhodoferax ferrireducens T118 putative lipoprotein YP_521870.1 610522 D 338969 CDS YP_521871.1 89899400 3960107 611730..612821 1 NC_007908.1 acyltransferase 3 612821 3960107 Rfer_0589 Rhodoferax ferrireducens T118 acyltransferase 3 YP_521871.1 611730 D 338969 CDS YP_521872.1 89899401 3960108 complement(612882..615512) 1 NC_007908.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 615512 alaS 3960108 alaS Rhodoferax ferrireducens T118 alanyl-tRNA synthetase YP_521872.1 612882 R 338969 CDS YP_521873.1 89899402 3960109 complement(615614..617008) 1 NC_007908.1 GntR family transcriptional regulator 617008 3960109 Rfer_0591 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_521873.1 615614 R 338969 CDS YP_521874.1 89899403 3960110 617152..618450 1 NC_007908.1 4-aminobutyrate aminotransferase 618450 3960110 Rfer_0592 Rhodoferax ferrireducens T118 4-aminobutyrate aminotransferase YP_521874.1 617152 D 338969 CDS YP_521875.1 89899404 3960111 618556..619638 1 NC_007908.1 spermidine/putrescine ABC transporter ATP-binding subunit 619638 3960111 Rfer_0593 Rhodoferax ferrireducens T118 spermidine/putrescine ABC transporter ATP-binding subunit YP_521875.1 618556 D 338969 CDS YP_521876.1 89899405 3960112 619697..620728 1 NC_007908.1 extracellular solute-binding protein 620728 3960112 Rfer_0594 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_521876.1 619697 D 338969 CDS YP_521877.1 89899406 3960113 620750..621991 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 621991 3960113 Rfer_0595 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_521877.1 620750 D 338969 CDS YP_521878.1 89899407 3960114 622066..622911 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 622911 3960114 Rfer_0596 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_521878.1 622066 D 338969 CDS YP_521879.1 89899408 3960115 622914..623861 1 NC_007908.1 agmatinase 623861 3960115 Rfer_0597 Rhodoferax ferrireducens T118 agmatinase YP_521879.1 622914 D 338969 CDS YP_521880.1 89899409 3960116 623934..625412 1 NC_007908.1 succinic semialdehyde dehydrogenase 625412 3960116 Rfer_0598 Rhodoferax ferrireducens T118 succinic semialdehyde dehydrogenase YP_521880.1 623934 D 338969 CDS YP_521881.1 89899410 3960117 complement(625491..626156) 1 NC_007908.1 cytochrome B561 626156 3960117 Rfer_0599 Rhodoferax ferrireducens T118 cytochrome B561 YP_521881.1 625491 R 338969 CDS YP_521882.1 89899411 3960118 626354..626806 1 NC_007908.1 class II cytochrome c 626806 3960118 Rfer_0600 Rhodoferax ferrireducens T118 class II cytochrome c YP_521882.1 626354 D 338969 CDS YP_521883.1 89899412 3960119 627074..627520 1 NC_007908.1 PTS system fructose subfamily transporter subunit IIA 627520 3960119 Rfer_0601 Rhodoferax ferrireducens T118 PTS system fructose subfamily transporter subunit IIA YP_521883.1 627074 D 338969 CDS YP_521884.1 89899413 3963920 627489..627758 1 NC_007908.1 HPrNtr 627758 3963920 Rfer_0602 Rhodoferax ferrireducens T118 HPrNtr YP_521884.1 627489 D 338969 CDS YP_521885.1 89899414 3963921 627755..629530 1 NC_007908.1 phosphoenolpyruvate-protein phosphotransferase 629530 3963921 Rfer_0603 Rhodoferax ferrireducens T118 phosphoenolpyruvate-protein phosphotransferase YP_521885.1 627755 D 338969 CDS YP_521886.1 89899415 3963922 complement(629533..630258) 1 NC_007908.1 LrgB-like protein 630258 3963922 Rfer_0604 Rhodoferax ferrireducens T118 LrgB-like protein YP_521886.1 629533 R 338969 CDS YP_521887.1 89899416 3963923 complement(630242..630598) 1 NC_007908.1 LrgA 630598 3963923 Rfer_0605 Rhodoferax ferrireducens T118 LrgA YP_521887.1 630242 R 338969 CDS YP_521888.1 89899417 3963924 complement(630611..632089) 1 NC_007908.1 FAD linked oxidase-like protein 632089 3963924 Rfer_0606 Rhodoferax ferrireducens T118 FAD linked oxidase-like protein YP_521888.1 630611 R 338969 CDS YP_521889.1 89899418 3963925 632339..633238 1 NC_007908.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 633238 psd 3963925 psd Rhodoferax ferrireducens T118 phosphatidylserine decarboxylase YP_521889.1 632339 D 338969 CDS YP_521890.1 89899419 3963926 633266..634057 1 NC_007908.1 enoyl-CoA hydratase/isomerase 634057 3963926 Rfer_0608 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_521890.1 633266 D 338969 CDS YP_521891.1 89899420 3963927 complement(634091..634939) 1 NC_007908.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 634939 purU 3963927 purU Rhodoferax ferrireducens T118 formyltetrahydrofolate deformylase YP_521891.1 634091 R 338969 CDS YP_521892.1 89899421 3963928 complement(634960..635904) 1 NC_007908.1 hypothetical protein 635904 3963928 Rfer_0610 Rhodoferax ferrireducens T118 hypothetical protein YP_521892.1 634960 R 338969 CDS YP_521893.1 89899422 3963929 complement(635867..636178) 1 NC_007908.1 hypothetical protein 636178 3963929 Rfer_0611 Rhodoferax ferrireducens T118 hypothetical protein YP_521893.1 635867 R 338969 CDS YP_521894.1 89899423 3963930 complement(636243..637316) 1 NC_007908.1 hypothetical protein 637316 3963930 Rfer_0612 Rhodoferax ferrireducens T118 hypothetical protein YP_521894.1 636243 R 338969 CDS YP_521895.1 89899424 3963931 637332..638336 1 NC_007908.1 fumarylacetoacetate (FAA) hydrolase 638336 3963931 Rfer_0613 Rhodoferax ferrireducens T118 fumarylacetoacetate (FAA) hydrolase YP_521895.1 637332 D 338969 CDS YP_521896.1 89899425 3963932 complement(638361..638963) 1 NC_007908.1 multiple antibiotic resistance (MarC)-like proteins 638963 3963932 Rfer_0614 Rhodoferax ferrireducens T118 multiple antibiotic resistance (MarC)-like proteins YP_521896.1 638361 R 338969 CDS YP_521897.1 89899426 3963933 complement(638979..639353) 1 NC_007908.1 TraR/DksA family transcriptional regulator 639353 3963933 Rfer_0615 Rhodoferax ferrireducens T118 TraR/DksA family transcriptional regulator YP_521897.1 638979 R 338969 CDS YP_521898.1 89899427 3963934 639465..639842 1 NC_007908.1 hypothetical protein 639842 3963934 Rfer_0616 Rhodoferax ferrireducens T118 hypothetical protein YP_521898.1 639465 D 338969 CDS YP_521899.1 89899428 3963935 639995..640510 1 NC_007908.1 hypothetical protein 640510 3963935 Rfer_0617 Rhodoferax ferrireducens T118 hypothetical protein YP_521899.1 639995 D 338969 CDS YP_521900.1 89899429 3963936 641074..641613 1 NC_007908.1 hypothetical protein 641613 3963936 Rfer_0618 Rhodoferax ferrireducens T118 hypothetical protein YP_521900.1 641074 D 338969 CDS YP_521901.1 89899430 3963937 641683..643986 1 NC_007908.1 TonB-dependent receptor 643986 3963937 Rfer_0619 Rhodoferax ferrireducens T118 TonB-dependent receptor YP_521901.1 641683 D 338969 CDS YP_521902.1 89899431 3963938 644055..645221 1 NC_007908.1 citrate utilization protein B 645221 3963938 Rfer_0620 Rhodoferax ferrireducens T118 citrate utilization protein B YP_521902.1 644055 D 338969 CDS YP_521903.1 89899432 3963901 645295..645999 1 NC_007908.1 hypothetical protein 645999 3963901 Rfer_0621 Rhodoferax ferrireducens T118 hypothetical protein YP_521903.1 645295 D 338969 CDS YP_521904.1 89899433 3963902 646032..647315 1 NC_007908.1 hypothetical protein 647315 3963902 Rfer_0622 Rhodoferax ferrireducens T118 hypothetical protein YP_521904.1 646032 D 338969 CDS YP_521905.1 89899434 3963903 647471..647755 1 NC_007908.1 prevent-host-death protein 647755 3963903 Rfer_0623 Rhodoferax ferrireducens T118 prevent-host-death protein YP_521905.1 647471 D 338969 CDS YP_521906.1 89899435 3963904 647757..648182 1 NC_007908.1 PilT protein-like protein 648182 3963904 Rfer_0624 Rhodoferax ferrireducens T118 PilT protein-like protein YP_521906.1 647757 D 338969 CDS YP_521907.1 89899436 3963905 complement(648304..648801) 1 NC_007908.1 hypothetical protein 648801 3963905 Rfer_0625 Rhodoferax ferrireducens T118 hypothetical protein YP_521907.1 648304 R 338969 CDS YP_521908.1 89899437 3963906 complement(648806..650023) 1 NC_007908.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 650023 tgt 3963906 tgt Rhodoferax ferrireducens T118 queuine tRNA-ribosyltransferase YP_521908.1 648806 R 338969 CDS YP_521909.1 89899438 3963907 complement(650058..651320) 1 NC_007908.1 metal dependent phosphohydrolase 651320 3963907 Rfer_0627 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_521909.1 650058 R 338969 CDS YP_521910.1 89899439 3963908 complement(651353..652435) 1 NC_007908.1 S-adenosylmethionine 652435 3963908 Rfer_0628 Rhodoferax ferrireducens T118 S-adenosylmethionine YP_521910.1 651353 R 338969 CDS YP_521911.1 89899440 3963909 652621..653016 1 NC_007908.1 hypothetical protein 653016 3963909 Rfer_0629 Rhodoferax ferrireducens T118 hypothetical protein YP_521911.1 652621 D 338969 CDS YP_521912.1 89899441 3963910 653566..654984 1 NC_007908.1 flagellin-like protein 654984 3963910 Rfer_0630 Rhodoferax ferrireducens T118 flagellin-like protein YP_521912.1 653566 D 338969 CDS YP_521913.1 89899442 3963911 655212..656627 1 NC_007908.1 flagellin-like protein 656627 3963911 Rfer_0631 Rhodoferax ferrireducens T118 flagellin-like protein YP_521913.1 655212 D 338969 CDS YP_521914.1 89899443 3963912 656799..658286 1 NC_007908.1 flagellar hook-associated 2-like protein 658286 3963912 Rfer_0632 Rhodoferax ferrireducens T118 flagellar hook-associated 2-like protein YP_521914.1 656799 D 338969 CDS YP_521915.1 89899444 3963913 658333..658794 1 NC_007908.1 flagellar protein FliS 658794 3963913 Rfer_0633 Rhodoferax ferrireducens T118 flagellar protein FliS YP_521915.1 658333 D 338969 CDS YP_521916.1 89899445 3963914 658808..659107 1 NC_007908.1 flagellar protein FliT 659107 3963914 Rfer_0634 Rhodoferax ferrireducens T118 flagellar protein FliT YP_521916.1 658808 D 338969 CDS YP_521917.1 89899446 3963916 complement(659452..660129) 1 NC_007908.1 hypothetical protein 660129 3963916 Rfer_0635 Rhodoferax ferrireducens T118 hypothetical protein YP_521917.1 659452 R 338969 CDS YP_521918.1 89899447 3963917 complement(660175..660690) 1 NC_007908.1 hypothetical protein 660690 3963917 Rfer_0636 Rhodoferax ferrireducens T118 hypothetical protein YP_521918.1 660175 R 338969 CDS YP_521919.1 89899448 3963918 660966..661388 1 NC_007908.1 signal-transduction protein 661388 3963918 Rfer_0637 Rhodoferax ferrireducens T118 signal-transduction protein YP_521919.1 660966 D 338969 CDS YP_521920.1 89899449 3963919 complement(661406..662707) 1 NC_007908.1 hypothetical protein 662707 3963919 Rfer_0638 Rhodoferax ferrireducens T118 hypothetical protein YP_521920.1 661406 R 338969 CDS YP_521921.1 89899450 3963882 complement(662688..663434) 1 NC_007908.1 hypothetical protein 663434 3963882 Rfer_0639 Rhodoferax ferrireducens T118 hypothetical protein YP_521921.1 662688 R 338969 CDS YP_521922.1 89899451 3963883 complement(663563..664111) 1 NC_007908.1 hypothetical protein 664111 3963883 Rfer_0640 Rhodoferax ferrireducens T118 hypothetical protein YP_521922.1 663563 R 338969 CDS YP_521923.1 89899452 3963884 complement(664108..664416) 1 NC_007908.1 heat shock protein DnaJ-like protein 664416 3963884 Rfer_0641 Rhodoferax ferrireducens T118 heat shock protein DnaJ-like protein YP_521923.1 664108 R 338969 CDS YP_521924.1 89899453 3963885 complement(664448..666337) 1 NC_007908.1 ABC transporter-like protein 666337 3963885 Rfer_0642 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_521924.1 664448 R 338969 CDS YP_521925.1 89899454 3963886 complement(666374..666829) 1 NC_007908.1 hypothetical protein 666829 3963886 Rfer_0643 Rhodoferax ferrireducens T118 hypothetical protein YP_521925.1 666374 R 338969 CDS YP_521926.1 89899455 3963887 complement(666903..667754) 1 NC_007908.1 HAD family hydrolase 667754 3963887 Rfer_0644 Rhodoferax ferrireducens T118 HAD family hydrolase YP_521926.1 666903 R 338969 CDS YP_521927.1 89899456 3963888 complement(667781..669412) 1 NC_007908.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 669412 prfC 3963888 prfC Rhodoferax ferrireducens T118 peptide chain release factor 3 YP_521927.1 667781 R 338969 CDS YP_521928.1 89899457 3963889 complement(669543..670313) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 670313 3963889 Rfer_0646 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_521928.1 669543 R 338969 CDS YP_521929.1 89899458 3963890 complement(670651..671784) 1 NC_007908.1 hypothetical protein 671784 3963890 Rfer_0647 Rhodoferax ferrireducens T118 hypothetical protein YP_521929.1 670651 R 338969 CDS YP_521930.1 89899459 3963891 672166..673038 1 NC_007908.1 hypothetical protein 673038 3963891 Rfer_0648 Rhodoferax ferrireducens T118 hypothetical protein YP_521930.1 672166 D 338969 CDS YP_521931.1 89899460 3963892 complement(673175..674092) 1 NC_007908.1 hypothetical protein 674092 3963892 Rfer_0649 Rhodoferax ferrireducens T118 hypothetical protein YP_521931.1 673175 R 338969 CDS YP_521932.1 89899461 3963893 complement(674234..674992) 1 NC_007908.1 putative hydratase 674992 3963893 Rfer_0650 Rhodoferax ferrireducens T118 putative hydratase YP_521932.1 674234 R 338969 CDS YP_521933.1 89899462 3963894 complement(675239..675805) 1 NC_007908.1 hypothetical protein 675805 3963894 Rfer_0651 Rhodoferax ferrireducens T118 hypothetical protein YP_521933.1 675239 R 338969 CDS YP_521934.1 89899463 3963895 676175..677635 1 NC_007908.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 677635 3963895 Rfer_0652 Rhodoferax ferrireducens T118 S-adenosyl-L-homocysteine hydrolase YP_521934.1 676175 D 338969 CDS YP_521935.1 89899464 3963896 677672..678493 1 NC_007908.1 ribosomal RNA methyltransferase RrmJ/FtsJ 678493 3963896 Rfer_0653 Rhodoferax ferrireducens T118 ribosomal RNA methyltransferase RrmJ/FtsJ YP_521935.1 677672 D 338969 CDS YP_521936.1 89899465 3963897 678504..679355 1 NC_007908.1 5,10-methylenetetrahydrofolate reductase 679355 3963897 Rfer_0654 Rhodoferax ferrireducens T118 5,10-methylenetetrahydrofolate reductase YP_521936.1 678504 D 338969 CDS YP_521937.1 89899466 3963898 complement(679652..680014) 1 NC_007908.1 hypothetical protein 680014 3963898 Rfer_0655 Rhodoferax ferrireducens T118 hypothetical protein YP_521937.1 679652 R 338969 CDS YP_521938.1 89899467 3963899 680042..681049 1 NC_007908.1 NAD-dependent epimerase/dehydratase 681049 3963899 Rfer_0656 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_521938.1 680042 D 338969 CDS YP_521939.1 89899468 3963900 complement(681084..681650) 1 NC_007908.1 protein tyrosine phosphatase 681650 3963900 Rfer_0657 Rhodoferax ferrireducens T118 protein tyrosine phosphatase YP_521939.1 681084 R 338969 CDS YP_521940.1 89899469 3963843 681878..682444 1 NC_007908.1 polysaccharide export protein 682444 3963843 Rfer_0658 Rhodoferax ferrireducens T118 polysaccharide export protein YP_521940.1 681878 D 338969 CDS YP_521941.1 89899470 3963844 682528..684102 1 NC_007908.1 lipopolysaccharide biosynthesis 684102 3963844 Rfer_0659 Rhodoferax ferrireducens T118 lipopolysaccharide biosynthesis YP_521941.1 682528 D 338969 CDS YP_521942.1 89899471 3963845 684110..685081 1 NC_007908.1 protein-tyrosine kinase 685081 3963845 Rfer_0660 Rhodoferax ferrireducens T118 protein-tyrosine kinase YP_521942.1 684110 D 338969 CDS YP_521943.1 89899472 3963846 685081..686637 1 NC_007908.1 hypothetical protein 686637 3963846 Rfer_0661 Rhodoferax ferrireducens T118 hypothetical protein YP_521943.1 685081 D 338969 CDS YP_521944.1 89899473 3963847 686641..687747 1 NC_007908.1 ATPase 687747 3963847 Rfer_0662 Rhodoferax ferrireducens T118 ATPase YP_521944.1 686641 D 338969 CDS YP_521945.1 89899474 3963848 687744..688940 1 NC_007908.1 UDP-N-acetylglucosamine 2-epimerase 688940 3963848 Rfer_0663 Rhodoferax ferrireducens T118 UDP-N-acetylglucosamine 2-epimerase YP_521945.1 687744 D 338969 CDS YP_521946.1 89899475 3963849 688937..689812 1 NC_007908.1 polysaccharide deacetylase 689812 3963849 Rfer_0664 Rhodoferax ferrireducens T118 polysaccharide deacetylase YP_521946.1 688937 D 338969 CDS YP_521947.1 89899476 3963850 689820..690857 1 NC_007908.1 hypothetical protein 690857 3963850 Rfer_0665 Rhodoferax ferrireducens T118 hypothetical protein YP_521947.1 689820 D 338969 CDS YP_521948.1 89899477 3963851 690984..692570 1 NC_007908.1 hypothetical protein 692570 3963851 Rfer_0666 Rhodoferax ferrireducens T118 hypothetical protein YP_521948.1 690984 D 338969 CDS YP_521949.1 89899478 3963852 692624..693904 1 NC_007908.1 UDP-glucose/GDP-mannose dehydrogenase 693904 3963852 Rfer_0667 Rhodoferax ferrireducens T118 UDP-glucose/GDP-mannose dehydrogenase YP_521949.1 692624 D 338969 CDS YP_521950.1 89899479 3963853 693905..695083 1 NC_007908.1 group 1 glycosyl transferase 695083 3963853 Rfer_0668 Rhodoferax ferrireducens T118 group 1 glycosyl transferase YP_521950.1 693905 D 338969 CDS YP_521951.1 89899480 3963854 695089..697014 1 NC_007908.1 asparagine synthase 697014 3963854 Rfer_0669 Rhodoferax ferrireducens T118 asparagine synthase YP_521951.1 695089 D 338969 CDS YP_521952.1 89899481 3963855 697011..698228 1 NC_007908.1 group 1 glycosyl transferase 698228 3963855 Rfer_0670 Rhodoferax ferrireducens T118 group 1 glycosyl transferase YP_521952.1 697011 D 338969 CDS YP_521953.1 89899482 3963856 698304..700163 1 NC_007908.1 asparagine synthase 700163 3963856 Rfer_0671 Rhodoferax ferrireducens T118 asparagine synthase YP_521953.1 698304 D 338969 CDS YP_521954.1 89899483 3963857 700160..701374 1 NC_007908.1 group 1 glycosyl transferase 701374 3963857 Rfer_0672 Rhodoferax ferrireducens T118 group 1 glycosyl transferase YP_521954.1 700160 D 338969 CDS YP_521955.1 89899484 3963858 701371..702687 1 NC_007908.1 GDP-mannose 6-dehydrogenase 702687 3963858 Rfer_0673 Rhodoferax ferrireducens T118 GDP-mannose 6-dehydrogenase YP_521955.1 701371 D 338969 CDS YP_521956.1 89899485 3963859 702678..703745 1 NC_007908.1 hypothetical protein 703745 3963859 Rfer_0674 Rhodoferax ferrireducens T118 hypothetical protein YP_521956.1 702678 D 338969 CDS YP_521957.1 89899486 3963860 703735..704865 1 NC_007908.1 group 1 glycosyl transferase 704865 3963860 Rfer_0675 Rhodoferax ferrireducens T118 group 1 glycosyl transferase YP_521957.1 703735 D 338969 CDS YP_521958.1 89899487 3963861 704862..706241 1 NC_007908.1 putative CapK protein 706241 3963861 Rfer_0676 Rhodoferax ferrireducens T118 putative CapK protein YP_521958.1 704862 D 338969 CDS YP_521959.1 89899488 3963862 706234..707544 1 NC_007908.1 O-antigen polymerase 707544 3963862 Rfer_0677 Rhodoferax ferrireducens T118 O-antigen polymerase YP_521959.1 706234 D 338969 CDS YP_521960.1 89899489 3963824 707541..708509 1 NC_007908.1 polysaccharide deacetylase 708509 3963824 Rfer_0678 Rhodoferax ferrireducens T118 polysaccharide deacetylase YP_521960.1 707541 D 338969 CDS YP_521961.1 89899490 3963825 708539..710053 1 NC_007908.1 hypothetical protein 710053 3963825 Rfer_0679 Rhodoferax ferrireducens T118 hypothetical protein YP_521961.1 708539 D 338969 CDS YP_521962.1 89899491 3963826 710135..712351 1 NC_007908.1 heparinase II/III-like protein 712351 3963826 Rfer_0680 Rhodoferax ferrireducens T118 heparinase II/III-like protein YP_521962.1 710135 D 338969 CDS YP_521963.1 89899492 3963827 712412..713737 1 NC_007908.1 twin-arginine translocation pathway signal protein 713737 3963827 Rfer_0681 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_521963.1 712412 D 338969 CDS YP_521964.1 89899493 3963828 713903..717274 1 NC_007908.1 hypothetical protein 717274 3963828 Rfer_0682 Rhodoferax ferrireducens T118 hypothetical protein YP_521964.1 713903 D 338969 CDS YP_521965.1 89899494 3963829 complement(717401..719149) 1 NC_007908.1 asparagine synthase 719149 3963829 Rfer_0683 Rhodoferax ferrireducens T118 asparagine synthase YP_521965.1 717401 R 338969 CDS YP_521966.1 89899495 3963830 719272..720585 1 NC_007908.1 hypothetical protein 720585 3963830 Rfer_0684 Rhodoferax ferrireducens T118 hypothetical protein YP_521966.1 719272 D 338969 CDS YP_521967.1 89899496 3963831 complement(720615..722591) 1 NC_007908.1 acyltransferase 3 722591 3963831 Rfer_0685 Rhodoferax ferrireducens T118 acyltransferase 3 YP_521967.1 720615 R 338969 CDS YP_521968.1 89899497 3963832 complement(722584..723699) 1 NC_007908.1 hypothetical protein 723699 3963832 Rfer_0686 Rhodoferax ferrireducens T118 hypothetical protein YP_521968.1 722584 R 338969 CDS YP_521969.1 89899498 3963833 complement(723713..724690) 1 NC_007908.1 glycosyl transferase family protein 724690 3963833 Rfer_0687 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_521969.1 723713 R 338969 CDS YP_521970.1 89899499 3963834 complement(724759..725346) 1 NC_007908.1 acetyltransferase 725346 3963834 Rfer_0688 Rhodoferax ferrireducens T118 acetyltransferase YP_521970.1 724759 R 338969 CDS YP_521971.1 89899500 3963835 complement(725343..726452) 1 NC_007908.1 DegT/DnrJ/EryC1/StrS aminotransferase 726452 3963835 Rfer_0689 Rhodoferax ferrireducens T118 DegT/DnrJ/EryC1/StrS aminotransferase YP_521971.1 725343 R 338969 CDS YP_521972.1 89899501 3963836 complement(726457..727398) 1 NC_007908.1 WxcM-like protein 727398 3963836 Rfer_0690 Rhodoferax ferrireducens T118 WxcM-like protein YP_521972.1 726457 R 338969 CDS YP_521973.1 89899502 3963837 complement(727402..728910) 1 NC_007908.1 polysaccharide biosynthesis protein 728910 3963837 Rfer_0691 Rhodoferax ferrireducens T118 polysaccharide biosynthesis protein YP_521973.1 727402 R 338969 CDS YP_521974.1 89899503 3963838 complement(728992..729708) 1 NC_007908.1 hypothetical protein 729708 3963838 Rfer_0692 Rhodoferax ferrireducens T118 hypothetical protein YP_521974.1 728992 R 338969 CDS YP_521975.1 89899504 3963839 729885..730583 1 NC_007908.1 hypothetical protein 730583 3963839 Rfer_0693 Rhodoferax ferrireducens T118 hypothetical protein YP_521975.1 729885 D 338969 CDS YP_521976.1 89899505 3963840 complement(730587..731453) 1 NC_007908.1 esterase/lipase/thioesterase family protein 731453 3963840 Rfer_0694 Rhodoferax ferrireducens T118 esterase/lipase/thioesterase family protein YP_521976.1 730587 R 338969 CDS YP_521977.1 89899506 3963841 complement(731710..732471) 1 NC_007908.1 hypothetical protein 732471 3963841 Rfer_0695 Rhodoferax ferrireducens T118 hypothetical protein YP_521977.1 731710 R 338969 CDS YP_521978.1 89899507 3963842 complement(732865..733749) 1 NC_007908.1 regulatory protein, LuxR 733749 3963842 Rfer_0696 Rhodoferax ferrireducens T118 regulatory protein, LuxR YP_521978.1 732865 R 338969 CDS YP_521979.1 89899508 3963939 complement(733781..734653) 1 NC_007908.1 esterase/lipase/thioesterase family protein 734653 3963939 Rfer_0697 Rhodoferax ferrireducens T118 esterase/lipase/thioesterase family protein YP_521979.1 733781 R 338969 CDS YP_521980.1 89899509 3963940 complement(734666..734917) 1 NC_007908.1 hypothetical protein 734917 3963940 Rfer_0698 Rhodoferax ferrireducens T118 hypothetical protein YP_521980.1 734666 R 338969 CDS YP_521981.1 89899510 3963941 735024..736661 1 NC_007908.1 AMP-dependent synthetase and ligase 736661 3963941 Rfer_0699 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_521981.1 735024 D 338969 CDS YP_521982.1 89899511 3963942 736703..737947 1 NC_007908.1 Orn/DAP/Arg decarboxylase 2 737947 3963942 Rfer_0700 Rhodoferax ferrireducens T118 Orn/DAP/Arg decarboxylase 2 YP_521982.1 736703 D 338969 CDS YP_521983.1 89899512 3963943 737940..739898 1 NC_007908.1 hypothetical protein 739898 3963943 Rfer_0701 Rhodoferax ferrireducens T118 hypothetical protein YP_521983.1 737940 D 338969 CDS YP_521984.1 89899513 3963944 740101..741483 1 NC_007908.1 undecaprenyl-phosphate galactosephosphotransferase 741483 3963944 Rfer_0702 Rhodoferax ferrireducens T118 undecaprenyl-phosphate galactosephosphotransferase YP_521984.1 740101 D 338969 CDS YP_521985.1 89899514 3963945 741536..743647 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 743647 3963945 Rfer_0703 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_521985.1 741536 D 338969 CDS YP_521986.1 89899515 3963946 743644..745005 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 745005 3963946 Rfer_0704 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_521986.1 743644 D 338969 CDS YP_521987.1 89899516 3963947 745043..747817 1 NC_007908.1 hypothetical protein 747817 3963947 Rfer_0705 Rhodoferax ferrireducens T118 hypothetical protein YP_521987.1 745043 D 338969 CDS YP_521988.1 89899517 3963948 747988..748641 1 NC_007908.1 twin-arginine translocation pathway signal protein 748641 3963948 Rfer_0706 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_521988.1 747988 D 338969 CDS YP_521989.1 89899518 3963949 748628..748975 1 NC_007908.1 hypothetical protein 748975 3963949 Rfer_0707 Rhodoferax ferrireducens T118 hypothetical protein YP_521989.1 748628 D 338969 CDS YP_521990.1 89899519 3963950 748972..749889 1 NC_007908.1 HPr kinase 749889 3963950 Rfer_0708 Rhodoferax ferrireducens T118 HPr kinase YP_521990.1 748972 D 338969 CDS YP_521991.1 89899520 3963951 749886..751004 1 NC_007908.1 hypothetical protein 751004 3963951 Rfer_0709 Rhodoferax ferrireducens T118 hypothetical protein YP_521991.1 749886 D 338969 CDS YP_521992.1 89899521 3963952 751080..751865 1 NC_007908.1 peptidase S1 and S6, chymotrypsin/Hap 751865 3963952 Rfer_0710 Rhodoferax ferrireducens T118 peptidase S1 and S6, chymotrypsin/Hap YP_521992.1 751080 D 338969 CDS YP_521993.1 89899522 3963953 complement(751893..753380) 1 NC_007908.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 753380 3963953 Rfer_0711 Rhodoferax ferrireducens T118 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_521993.1 751893 R 338969 CDS YP_521994.1 89899523 3963954 complement(753416..754546) 1 NC_007908.1 nucleotidyl transferase 754546 3963954 Rfer_0712 Rhodoferax ferrireducens T118 nucleotidyl transferase YP_521994.1 753416 R 338969 CDS YP_521995.1 89899524 3963955 complement(754572..755591) 1 NC_007908.1 UDP-glucose 4-epimerase 755591 3963955 Rfer_0713 Rhodoferax ferrireducens T118 UDP-glucose 4-epimerase YP_521995.1 754572 R 338969 CDS YP_521996.1 89899525 3963956 complement(755627..756529) 1 NC_007908.1 dTDP-4-dehydrorhamnose reductase 756529 3963956 Rfer_0714 Rhodoferax ferrireducens T118 dTDP-4-dehydrorhamnose reductase YP_521996.1 755627 R 338969 CDS YP_521997.1 89899526 3963957 complement(756634..757695) 1 NC_007908.1 dTDP-glucose 4,6-dehydratase 757695 3963957 Rfer_0715 Rhodoferax ferrireducens T118 dTDP-glucose 4,6-dehydratase YP_521997.1 756634 R 338969 CDS YP_521998.1 89899527 3963958 complement(757774..759069) 1 NC_007908.1 acetyl-CoA hydrolase/transferase 759069 3963958 Rfer_0716 Rhodoferax ferrireducens T118 acetyl-CoA hydrolase/transferase YP_521998.1 757774 R 338969 CDS YP_521999.1 89899528 3961660 complement(759180..760001) 1 NC_007908.1 aldose 1-epimerase 760001 3961660 Rfer_0717 Rhodoferax ferrireducens T118 aldose 1-epimerase YP_521999.1 759180 R 338969 CDS YP_522000.1 89899529 3961662 complement(760855..761070) 1 NC_007908.1 hypothetical protein 761070 3961662 Rfer_0719 Rhodoferax ferrireducens T118 hypothetical protein YP_522000.1 760855 R 338969 CDS YP_522001.1 89899530 3961663 complement(761054..762010) 1 NC_007908.1 hypothetical protein 762010 3961663 Rfer_0720 Rhodoferax ferrireducens T118 hypothetical protein YP_522001.1 761054 R 338969 CDS YP_522002.1 89899531 3961664 762655..763086 1 NC_007908.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 763086 rplM 3961664 rplM Rhodoferax ferrireducens T118 50S ribosomal protein L13 YP_522002.1 762655 D 338969 CDS YP_522003.1 89899532 3961665 763097..763489 1 NC_007908.1 30S ribosomal protein S9 763489 3961665 Rfer_0722 Rhodoferax ferrireducens T118 30S ribosomal protein S9 YP_522003.1 763097 D 338969 CDS YP_522004.1 89899533 3961666 763589..764317 1 NC_007908.1 hypothetical protein 764317 3961666 Rfer_0723 Rhodoferax ferrireducens T118 hypothetical protein YP_522004.1 763589 D 338969 CDS YP_522005.1 89899534 3961667 764354..764755 1 NC_007908.1 hypothetical protein 764755 3961667 Rfer_0724 Rhodoferax ferrireducens T118 hypothetical protein YP_522005.1 764354 D 338969 CDS YP_522006.1 89899535 3961668 764813..765175 1 NC_007908.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 765175 3961668 Rfer_0725 Rhodoferax ferrireducens T118 iron-sulfur cluster insertion protein ErpA YP_522006.1 764813 D 338969 CDS YP_522007.1 89899536 3961669 complement(765198..766367) 1 NC_007908.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 766367 anmK 3961669 anmK Rhodoferax ferrireducens T118 anhydro-N-acetylmuramic acid kinase YP_522007.1 765198 R 338969 CDS YP_522008.1 89899537 3961670 complement(766405..767802) 1 NC_007908.1 peptidase M23B 767802 3961670 Rfer_0727 Rhodoferax ferrireducens T118 peptidase M23B YP_522008.1 766405 R 338969 CDS YP_522009.1 89899538 3961671 767940..769184 1 NC_007908.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 769184 3961671 Rfer_0728 Rhodoferax ferrireducens T118 tyrosyl-tRNA synthetase YP_522009.1 767940 D 338969 CDS YP_522010.1 89899539 3961672 769192..770106 1 NC_007908.1 cation diffusion facilitator family transporter 770106 3961672 Rfer_0729 Rhodoferax ferrireducens T118 cation diffusion facilitator family transporter YP_522010.1 769192 D 338969 CDS YP_522011.1 89899540 3961673 770126..770605 1 NC_007908.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 770605 3961673 Rfer_0730 Rhodoferax ferrireducens T118 D-tyrosyl-tRNA(Tyr) deacylase YP_522011.1 770126 D 338969 CDS YP_522012.1 89899541 3961674 770686..771318 1 NC_007908.1 putative ubiquinone biosynthesis monooxygenase COQ7 771318 3961674 Rfer_0731 Rhodoferax ferrireducens T118 putative ubiquinone biosynthesis monooxygenase COQ7 YP_522012.1 770686 D 338969 CDS YP_522013.1 89899542 3961675 complement(771320..771769) 1 NC_007908.1 OsmC-like protein 771769 3961675 Rfer_0732 Rhodoferax ferrireducens T118 OsmC-like protein YP_522013.1 771320 R 338969 CDS YP_522014.1 89899543 3961676 771855..773402 1 NC_007908.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 773402 3961676 Rfer_0733 Rhodoferax ferrireducens T118 threonine dehydratase YP_522014.1 771855 D 338969 CDS YP_522015.1 89899544 3961677 773399..774304 1 NC_007908.1 5-nucleotidase 774304 3961677 Rfer_0734 Rhodoferax ferrireducens T118 5-nucleotidase YP_522015.1 773399 D 338969 CDS YP_522016.1 89899545 3961678 774297..776138 1 NC_007908.1 ABC transporter-like protein 776138 3961678 Rfer_0735 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522016.1 774297 D 338969 CDS YP_522017.1 89899546 3960139 complement(776111..776842) 1 NC_007908.1 ExsB 776842 3960139 Rfer_0736 Rhodoferax ferrireducens T118 ExsB YP_522017.1 776111 R 338969 CDS YP_522018.1 89899547 3960140 complement(776879..777325) 1 NC_007908.1 hypothetical protein 777325 3960140 Rfer_0737 Rhodoferax ferrireducens T118 hypothetical protein YP_522018.1 776879 R 338969 CDS YP_522019.1 89899548 3960141 complement(777400..778416) 1 NC_007908.1 PhoH-like protein 778416 3960141 Rfer_0738 Rhodoferax ferrireducens T118 PhoH-like protein YP_522019.1 777400 R 338969 CDS YP_522020.1 89899549 3960142 778458..779030 1 NC_007908.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 779030 ruvA 3960142 ruvA Rhodoferax ferrireducens T118 Holliday junction DNA helicase RuvA YP_522020.1 778458 D 338969 CDS YP_522021.1 89899550 3960143 779058..779303 1 NC_007908.1 hypothetical protein 779303 3960143 Rfer_0740 Rhodoferax ferrireducens T118 hypothetical protein YP_522021.1 779058 D 338969 CDS YP_522022.1 89899551 3960144 779356..779859 1 NC_007908.1 NLP/P60 779859 3960144 Rfer_0741 Rhodoferax ferrireducens T118 NLP/P60 YP_522022.1 779356 D 338969 CDS YP_522023.1 89899552 3960145 779914..780348 1 NC_007908.1 hypothetical protein 780348 3960145 Rfer_0742 Rhodoferax ferrireducens T118 hypothetical protein YP_522023.1 779914 D 338969 CDS YP_522024.1 89899553 3960146 complement(780374..780844) 1 NC_007908.1 hypothetical protein 780844 3960146 Rfer_0743 Rhodoferax ferrireducens T118 hypothetical protein YP_522024.1 780374 R 338969 CDS YP_522025.1 89899554 3960147 complement(780936..782099) 1 NC_007908.1 cytochrome B561 782099 3960147 Rfer_0744 Rhodoferax ferrireducens T118 cytochrome B561 YP_522025.1 780936 R 338969 CDS YP_522026.1 89899555 3960148 complement(782177..782659) 1 NC_007908.1 diheme cytochrome c 782659 3960148 Rfer_0745 Rhodoferax ferrireducens T118 diheme cytochrome c YP_522026.1 782177 R 338969 CDS YP_522027.1 89899556 3960149 complement(782670..783074) 1 NC_007908.1 cytochrome c-like protein 783074 3960149 Rfer_0746 Rhodoferax ferrireducens T118 cytochrome c-like protein YP_522027.1 782670 R 338969 CDS YP_522028.1 89899557 3960150 complement(783172..783594) 1 NC_007908.1 CoA-binding protein 783594 3960150 Rfer_0747 Rhodoferax ferrireducens T118 CoA-binding protein YP_522028.1 783172 R 338969 CDS YP_522029.1 89899558 3960151 complement(783599..785773) 1 NC_007908.1 cytochrome c biogenesis transmembrane protein 785773 3960151 Rfer_0748 Rhodoferax ferrireducens T118 cytochrome c biogenesis transmembrane protein YP_522029.1 783599 R 338969 CDS YP_522030.1 89899559 3960152 complement(785867..786211) 1 NC_007908.1 hypothetical protein 786211 3960152 Rfer_0749 Rhodoferax ferrireducens T118 hypothetical protein YP_522030.1 785867 R 338969 CDS YP_522031.1 89899560 3960153 786434..786763 1 NC_007908.1 sigma 54 modulation protein/ribosomal protein S30EA 786763 3960153 Rfer_0750 Rhodoferax ferrireducens T118 sigma 54 modulation protein/ribosomal protein S30EA YP_522031.1 786434 D 338969 CDS YP_522032.1 89899561 3960154 786857..787324 1 NC_007908.1 PTS IIA-like protein nitrogen-regulatory protein PtsN 787324 3960154 Rfer_0751 Rhodoferax ferrireducens T118 PTS IIA-like protein nitrogen-regulatory protein PtsN YP_522032.1 786857 D 338969 CDS YP_522033.2 162289256 3960155 787365..788315 1 NC_007908.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 788315 3960155 Rfer_0752 Rhodoferax ferrireducens T118 HPr kinase/phosphorylase YP_522033.2 787365 D 338969 CDS YP_522034.1 89899563 3960156 complement(788358..788804) 1 NC_007908.1 ferric uptake regulator family protein 788804 3960156 Rfer_0753 Rhodoferax ferrireducens T118 ferric uptake regulator family protein YP_522034.1 788358 R 338969 CDS YP_522035.1 89899564 3960157 788926..789438 1 NC_007908.1 SmpA/OmlA 789438 3960157 Rfer_0754 Rhodoferax ferrireducens T118 SmpA/OmlA YP_522035.1 788926 D 338969 CDS YP_522036.1 89899565 3960158 789482..790297 1 NC_007908.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 790297 3960158 Rfer_0755 Rhodoferax ferrireducens T118 dihydrodipicolinate reductase YP_522036.1 789482 D 338969 CDS YP_522037.1 89899566 3964134 790294..790947 1 NC_007908.1 MotA/TolQ/ExbB proton channel 790947 3964134 Rfer_0756 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_522037.1 790294 D 338969 CDS YP_522038.1 89899567 3964135 790968..791396 1 NC_007908.1 biopolymer transport protein ExbD/TolR 791396 3964135 Rfer_0757 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_522038.1 790968 D 338969 CDS YP_522039.1 89899568 3964136 791439..794117 1 NC_007908.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 794117 leuS 3964136 leuS Rhodoferax ferrireducens T118 leucyl-tRNA synthetase YP_522039.1 791439 D 338969 CDS YP_522040.1 89899569 3964137 794128..794619 1 NC_007908.1 rare lipoprotein B 794619 3964137 Rfer_0759 Rhodoferax ferrireducens T118 rare lipoprotein B YP_522040.1 794128 D 338969 CDS YP_522041.1 89899570 3964138 794734..795798 1 NC_007908.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 795798 holA 3964138 holA Rhodoferax ferrireducens T118 DNA polymerase III subunit delta YP_522041.1 794734 D 338969 CDS YP_522042.1 89899571 3964139 796494..797828 1 NC_007908.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 797828 proA 3964139 proA Rhodoferax ferrireducens T118 gamma-glutamyl phosphate reductase YP_522042.1 796494 D 338969 CDS YP_522043.1 89899572 3964140 797891..798217 1 NC_007908.1 hypothetical protein 798217 3964140 Rfer_0762 Rhodoferax ferrireducens T118 hypothetical protein YP_522043.1 797891 D 338969 CDS YP_522044.1 89899573 3964141 798269..799564 1 NC_007908.1 glutamate--cysteine ligase GshA 799564 3964141 Rfer_0763 Rhodoferax ferrireducens T118 glutamate--cysteine ligase GshA YP_522044.1 798269 D 338969 CDS YP_522045.1 89899574 3964142 799574..801442 1 NC_007908.1 K+ potassium transporter 801442 3964142 Rfer_0764 Rhodoferax ferrireducens T118 K+ potassium transporter YP_522045.1 799574 D 338969 CDS YP_522046.1 89899575 3964143 801508..802455 1 NC_007908.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 802455 3964143 Rfer_0765 Rhodoferax ferrireducens T118 glutathione synthetase YP_522046.1 801508 D 338969 CDS YP_522047.1 89899576 3964144 complement(802377..803273) 1 NC_007908.1 class-II glutamine amidotransferase 803273 3964144 Rfer_0766 Rhodoferax ferrireducens T118 class-II glutamine amidotransferase YP_522047.1 802377 R 338969 CDS YP_522048.1 89899577 3964145 803337..805289 1 NC_007908.1 coenzyme A transferase 805289 3964145 Rfer_0767 Rhodoferax ferrireducens T118 coenzyme A transferase YP_522048.1 803337 D 338969 CDS YP_522049.1 89899578 3964146 805322..806185 1 NC_007908.1 hypothetical protein 806185 3964146 Rfer_0768 Rhodoferax ferrireducens T118 hypothetical protein YP_522049.1 805322 D 338969 CDS YP_522050.1 89899579 3964147 806214..807782 1 NC_007908.1 glycosyl transferase family protein 807782 3964147 Rfer_0769 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_522050.1 806214 D 338969 CDS YP_522051.1 89899580 3964148 complement(807723..808091) 1 NC_007908.1 GtrA-like protein 808091 3964148 Rfer_0770 Rhodoferax ferrireducens T118 GtrA-like protein YP_522051.1 807723 R 338969 CDS YP_522052.1 89899581 3964149 complement(808088..809107) 1 NC_007908.1 glycosyl transferase family protein 809107 3964149 Rfer_0771 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_522052.1 808088 R 338969 CDS YP_522053.1 89899582 3964150 complement(809203..809541) 1 NC_007908.1 PsiF 809541 3964150 Rfer_0772 Rhodoferax ferrireducens T118 PsiF YP_522053.1 809203 R 338969 CDS YP_522054.1 89899583 3964151 809683..811380 1 NC_007908.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 811380 argS 3964151 argS Rhodoferax ferrireducens T118 arginyl-tRNA synthetase YP_522054.1 809683 D 338969 CDS YP_522055.1 89899584 3964152 811448..812083 1 NC_007908.1 hypothetical protein 812083 3964152 Rfer_0774 Rhodoferax ferrireducens T118 hypothetical protein YP_522055.1 811448 D 338969 CDS YP_522056.1 89899585 3964193 812157..812831 1 NC_007908.1 DSBA oxidoreductase 812831 3964193 Rfer_0775 Rhodoferax ferrireducens T118 DSBA oxidoreductase YP_522056.1 812157 D 338969 CDS YP_522057.1 89899586 3964194 813018..813659 1 NC_007908.1 OstA-like protein 813659 3964194 Rfer_0776 Rhodoferax ferrireducens T118 OstA-like protein YP_522057.1 813018 D 338969 CDS YP_522058.1 89899587 3964195 813659..814453 1 NC_007908.1 ABC transporter-like protein 814453 3964195 Rfer_0777 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522058.1 813659 D 338969 CDS YP_522059.1 89899588 3964196 814467..816059 1 NC_007908.1 sigma-54 (RpoN) 816059 3964196 Rfer_0778 Rhodoferax ferrireducens T118 sigma-54 (RpoN) YP_522059.1 814467 D 338969 CDS YP_522060.1 89899589 3964197 816056..817342 1 NC_007908.1 putative RNA methylase 817342 3964197 Rfer_0779 Rhodoferax ferrireducens T118 putative RNA methylase YP_522060.1 816056 D 338969 CDS YP_522061.1 89899590 3964198 817339..817749 1 NC_007908.1 hypothetical protein 817749 3964198 Rfer_0780 Rhodoferax ferrireducens T118 hypothetical protein YP_522061.1 817339 D 338969 CDS YP_522062.1 89899591 3964199 817840..819516 1 NC_007908.1 putative signal transduction histidine kinase 819516 3964199 Rfer_0781 Rhodoferax ferrireducens T118 putative signal transduction histidine kinase YP_522062.1 817840 D 338969 CDS YP_522063.1 89899592 3964200 819716..820462 1 NC_007908.1 two component LuxR family transcriptional regulator 820462 3964200 Rfer_0782 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_522063.1 819716 D 338969 CDS YP_522064.1 89899593 3964201 820663..822093 1 NC_007908.1 hypothetical protein 822093 3964201 Rfer_0783 Rhodoferax ferrireducens T118 hypothetical protein YP_522064.1 820663 D 338969 CDS YP_522065.1 89899594 3964202 822376..823329 1 NC_007908.1 hypothetical protein 823329 3964202 Rfer_0784 Rhodoferax ferrireducens T118 hypothetical protein YP_522065.1 822376 D 338969 CDS YP_522066.1 89899595 3964203 823326..825605 1 NC_007908.1 putative spermidine synthase 825605 3964203 Rfer_0785 Rhodoferax ferrireducens T118 putative spermidine synthase YP_522066.1 823326 D 338969 CDS YP_522067.1 89899596 3964204 825602..826267 1 NC_007908.1 isoprenylcysteine carboxyl methyltransferase 826267 3964204 Rfer_0786 Rhodoferax ferrireducens T118 isoprenylcysteine carboxyl methyltransferase YP_522067.1 825602 D 338969 CDS YP_522068.1 89899597 3964205 826360..826866 1 NC_007908.1 response regulator receiver domain-containing protein 826866 3964205 Rfer_0787 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_522068.1 826360 D 338969 CDS YP_522069.1 89899598 3964206 826841..827059 1 NC_007908.1 Flp/Fap pilin component 827059 3964206 Rfer_0788 Rhodoferax ferrireducens T118 Flp/Fap pilin component YP_522069.1 826841 D 338969 CDS YP_522070.1 89899599 3964207 827183..827359 1 NC_007908.1 Flp/Fap pilin component 827359 3964207 Rfer_0789 Rhodoferax ferrireducens T118 Flp/Fap pilin component YP_522070.1 827183 D 338969 CDS YP_522071.1 89899600 3964208 827401..827979 1 NC_007908.1 peptidase A24A, prepilin type IV 827979 3964208 Rfer_0790 Rhodoferax ferrireducens T118 peptidase A24A, prepilin type IV YP_522071.1 827401 D 338969 CDS YP_522072.1 89899601 3964209 827993..829351 1 NC_007908.1 ATPase 829351 3964209 Rfer_0791 Rhodoferax ferrireducens T118 ATPase YP_522072.1 827993 D 338969 CDS YP_522073.1 89899602 3964210 829348..830208 1 NC_007908.1 Flp pilus assembly CpaB 830208 3964210 Rfer_0792 Rhodoferax ferrireducens T118 Flp pilus assembly CpaB YP_522073.1 829348 D 338969 CDS YP_522074.1 89899603 3964211 830247..831962 1 NC_007908.1 type II and III secretion system protein 831962 3964211 Rfer_0793 Rhodoferax ferrireducens T118 type II and III secretion system protein YP_522074.1 830247 D 338969 CDS YP_522075.1 89899604 3964212 831962..832243 1 NC_007908.1 putative lipoprotein 832243 3964212 Rfer_0794 Rhodoferax ferrireducens T118 putative lipoprotein YP_522075.1 831962 D 338969 CDS YP_522076.1 89899605 3963959 832277..833551 1 NC_007908.1 hypothetical protein 833551 3963959 Rfer_0795 Rhodoferax ferrireducens T118 hypothetical protein YP_522076.1 832277 D 338969 CDS YP_522077.1 89899606 3963960 833565..834035 1 NC_007908.1 TadE-like protein 834035 3963960 Rfer_0796 Rhodoferax ferrireducens T118 TadE-like protein YP_522077.1 833565 D 338969 CDS YP_522078.1 89899607 3963961 834032..834475 1 NC_007908.1 TadE-like protein 834475 3963961 Rfer_0797 Rhodoferax ferrireducens T118 TadE-like protein YP_522078.1 834032 D 338969 CDS YP_522079.1 89899608 3963962 834472..835647 1 NC_007908.1 response regulator receiver domain-containing protein 835647 3963962 Rfer_0798 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_522079.1 834472 D 338969 CDS YP_522080.1 89899609 3963963 835658..837016 1 NC_007908.1 type II secretion system protein E 837016 3963963 Rfer_0799 Rhodoferax ferrireducens T118 type II secretion system protein E YP_522080.1 835658 D 338969 CDS YP_522081.1 89899610 3963964 837027..837995 1 NC_007908.1 type II secretion system protein 837995 3963964 Rfer_0800 Rhodoferax ferrireducens T118 type II secretion system protein YP_522081.1 837027 D 338969 CDS YP_522082.1 89899611 3963965 838009..838947 1 NC_007908.1 type II secretion system protein 838947 3963965 Rfer_0801 Rhodoferax ferrireducens T118 type II secretion system protein YP_522082.1 838009 D 338969 CDS YP_522083.1 89899612 3963966 838962..840050 1 NC_007908.1 hypothetical protein 840050 3963966 Rfer_0802 Rhodoferax ferrireducens T118 hypothetical protein YP_522083.1 838962 D 338969 CDS YP_522084.1 89899613 3963967 complement(840078..841703) 1 NC_007908.1 ferredoxin-dependent glutamate synthase 841703 3963967 Rfer_0803 Rhodoferax ferrireducens T118 ferredoxin-dependent glutamate synthase YP_522084.1 840078 R 338969 CDS YP_522085.1 89899614 3963968 841784..842635 1 NC_007908.1 YgfB; YecA 842635 3963968 Rfer_0804 Rhodoferax ferrireducens T118 YecA YP_522085.1 841784 D 338969 CDS YP_522086.1 89899615 3963969 complement(842661..843542) 1 NC_007908.1 Pirin-like protein 843542 3963969 Rfer_0805 Rhodoferax ferrireducens T118 Pirin-like protein YP_522086.1 842661 R 338969 CDS YP_522087.1 89899616 3963970 843620..844558 1 NC_007908.1 LysR family transcriptional regulator 844558 3963970 Rfer_0806 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522087.1 843620 D 338969 CDS YP_522088.1 89899617 3963971 complement(844561..845493) 1 NC_007908.1 LysR family transcriptional regulator 845493 3963971 Rfer_0807 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522088.1 844561 R 338969 CDS YP_522089.1 89899618 3963972 845703..846011 1 NC_007908.1 hypothetical protein 846011 3963972 Rfer_0808 Rhodoferax ferrireducens T118 hypothetical protein YP_522089.1 845703 D 338969 CDS YP_522090.1 89899619 3963973 846233..846844 1 NC_007908.1 (acyl-carrier protein) phosphodiesterase 846844 3963973 Rfer_0809 Rhodoferax ferrireducens T118 (acyl-carrier protein) phosphodiesterase YP_522090.1 846233 D 338969 CDS YP_522091.1 89899620 3963974 846869..847507 1 NC_007908.1 toluene tolerance 847507 3963974 Rfer_0810 Rhodoferax ferrireducens T118 toluene tolerance YP_522091.1 846869 D 338969 CDS YP_522092.1 89899621 3963975 complement(847594..847788) 1 NC_007908.1 hypothetical protein 847788 3963975 Rfer_0811 Rhodoferax ferrireducens T118 hypothetical protein YP_522092.1 847594 R 338969 CDS YP_522093.1 89899622 3963976 complement(847825..848952) 1 NC_007908.1 hypothetical protein 848952 3963976 Rfer_0812 Rhodoferax ferrireducens T118 hypothetical protein YP_522093.1 847825 R 338969 CDS YP_522094.1 89899623 3963977 848974..849768 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 849768 3963977 Rfer_0813 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_522094.1 848974 D 338969 CDS YP_522095.1 89899624 3964173 849801..850193 1 NC_007908.1 dihydroneopterin aldolase 850193 3964173 Rfer_0814 Rhodoferax ferrireducens T118 dihydroneopterin aldolase YP_522095.1 849801 D 338969 CDS YP_522096.1 89899625 3964174 850214..851230 1 NC_007908.1 tRNA 2-thiocytidine biosynthesis protein TtcA 851230 3964174 Rfer_0815 Rhodoferax ferrireducens T118 tRNA 2-thiocytidine biosynthesis protein TtcA YP_522096.1 850214 D 338969 CDS YP_522097.1 89899626 3964175 851337..851975 1 NC_007908.1 phosphoglycerate mutase 851975 3964175 Rfer_0816 Rhodoferax ferrireducens T118 phosphoglycerate mutase YP_522097.1 851337 D 338969 CDS YP_522098.1 89899627 3964176 852002..852712 1 NC_007908.1 YhhN-like protein 852712 3964176 Rfer_0817 Rhodoferax ferrireducens T118 YhhN-like protein YP_522098.1 852002 D 338969 CDS YP_522099.1 89899628 3964177 852793..853398 1 NC_007908.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity; phosphoserine phosphatase 853398 thrH 3964177 thrH Rhodoferax ferrireducens T118 phosphoserine phosphatase YP_522099.1 852793 D 338969 CDS YP_522100.1 89899629 3964178 853623..854108 1 NC_007908.1 hypothetical protein 854108 3964178 Rfer_0819 Rhodoferax ferrireducens T118 hypothetical protein YP_522100.1 853623 D 338969 CDS YP_522101.1 89899630 3964179 complement(854163..855239) 1 NC_007908.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 855239 ruvB 3964179 ruvB Rhodoferax ferrireducens T118 Holliday junction DNA helicase RuvB YP_522101.1 854163 R 338969 CDS YP_522102.1 89899631 3964180 855395..856504 1 NC_007908.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 856504 hemE 3964180 hemE Rhodoferax ferrireducens T118 uroporphyrinogen decarboxylase YP_522102.1 855395 D 338969 CDS YP_522103.1 89899632 3964181 856890..859091 1 NC_007908.1 primosomal protein N' 859091 3964181 Rfer_0822 Rhodoferax ferrireducens T118 primosomal protein N' YP_522103.1 856890 D 338969 CDS YP_522104.1 89899633 3964182 complement(859191..859691) 1 NC_007908.1 hypothetical protein 859691 3964182 Rfer_0823 Rhodoferax ferrireducens T118 hypothetical protein YP_522104.1 859191 R 338969 CDS YP_522105.1 89899634 3964183 complement(859847..860836) 1 NC_007908.1 hypothetical protein 860836 3964183 Rfer_0824 Rhodoferax ferrireducens T118 hypothetical protein YP_522105.1 859847 R 338969 CDS YP_522106.1 89899635 3964184 complement(860857..862212) 1 NC_007908.1 FAD linked oxidase-like protein 862212 3964184 Rfer_0825 Rhodoferax ferrireducens T118 FAD linked oxidase-like protein YP_522106.1 860857 R 338969 CDS YP_522107.1 89899636 3964185 complement(862202..863416) 1 NC_007908.1 cyclopropane-fatty-acyl-phospholipid synthase 863416 3964185 Rfer_0826 Rhodoferax ferrireducens T118 cyclopropane-fatty-acyl-phospholipid synthase YP_522107.1 862202 R 338969 CDS YP_522108.1 89899637 3964186 complement(863465..864847) 1 NC_007908.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 864847 3964186 Rfer_0827 Rhodoferax ferrireducens T118 nicotinate phosphoribosyltransferase YP_522108.1 863465 R 338969 CDS YP_522109.1 89899638 3964187 complement(864844..865452) 1 NC_007908.1 isochorismatase hydrolase 865452 3964187 Rfer_0828 Rhodoferax ferrireducens T118 isochorismatase hydrolase YP_522109.1 864844 R 338969 CDS YP_522110.1 89899639 3964188 complement(865566..867308) 1 NC_007908.1 PHP-like protein 867308 3964188 Rfer_0829 Rhodoferax ferrireducens T118 PHP-like protein YP_522110.1 865566 R 338969 CDS YP_522111.1 89899640 3964189 complement(867321..868418) 1 NC_007908.1 heat shock protein DnaJ-like protein 868418 3964189 Rfer_0830 Rhodoferax ferrireducens T118 heat shock protein DnaJ-like protein YP_522111.1 867321 R 338969 CDS YP_522112.1 89899641 3964190 complement(868425..870860) 1 NC_007908.1 ATP-dependent protease 870860 3964190 Rfer_0831 Rhodoferax ferrireducens T118 ATP-dependent protease YP_522112.1 868425 R 338969 CDS YP_522113.1 89899642 3964191 complement(870857..872758) 1 NC_007908.1 heat shock protein 70 872758 3964191 Rfer_0832 Rhodoferax ferrireducens T118 heat shock protein 70 YP_522113.1 870857 R 338969 CDS YP_522114.1 89899643 3964192 complement(872844..873353) 1 NC_007908.1 heat shock protein Hsp20 873353 3964192 Rfer_0833 Rhodoferax ferrireducens T118 heat shock protein Hsp20 YP_522114.1 872844 R 338969 CDS YP_522115.1 89899644 3964057 873412..873693 1 NC_007908.1 hypothetical protein 873693 3964057 Rfer_0834 Rhodoferax ferrireducens T118 hypothetical protein YP_522115.1 873412 D 338969 CDS YP_522116.1 89899645 3964058 873800..874573 1 NC_007908.1 hypothetical protein 874573 3964058 Rfer_0835 Rhodoferax ferrireducens T118 hypothetical protein YP_522116.1 873800 D 338969 CDS YP_522117.1 89899646 3964059 complement(874703..875557) 1 NC_007908.1 6-phosphogluconate dehydrogenase 875557 3964059 Rfer_0836 Rhodoferax ferrireducens T118 6-phosphogluconate dehydrogenase YP_522117.1 874703 R 338969 CDS YP_522118.1 89899647 3964060 complement(875636..876934) 1 NC_007908.1 hypothetical protein 876934 3964060 Rfer_0837 Rhodoferax ferrireducens T118 hypothetical protein YP_522118.1 875636 R 338969 CDS YP_522119.1 89899648 3964062 877820..878236 1 NC_007908.1 hypothetical protein 878236 3964062 Rfer_0839 Rhodoferax ferrireducens T118 hypothetical protein YP_522119.1 877820 D 338969 CDS YP_522120.1 89899649 3964063 878660..879817 1 NC_007908.1 hypothetical protein 879817 3964063 Rfer_0840 Rhodoferax ferrireducens T118 hypothetical protein YP_522120.1 878660 D 338969 CDS YP_522121.1 89899650 3964064 879814..880113 1 NC_007908.1 hypothetical protein 880113 3964064 Rfer_0841 Rhodoferax ferrireducens T118 hypothetical protein YP_522121.1 879814 D 338969 CDS YP_522122.1 89899651 3964065 880110..880811 1 NC_007908.1 hypothetical protein 880811 3964065 Rfer_0842 Rhodoferax ferrireducens T118 hypothetical protein YP_522122.1 880110 D 338969 CDS YP_522123.1 89899652 3964066 complement(881074..882240) 1 NC_007908.1 mandelate racemase/muconate lactonizing protein 882240 3964066 Rfer_0843 Rhodoferax ferrireducens T118 mandelate racemase/muconate lactonizing protein YP_522123.1 881074 R 338969 CDS YP_522124.1 89899653 3964067 882368..883273 1 NC_007908.1 LysR family transcriptional regulator 883273 3964067 Rfer_0844 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522124.1 882368 D 338969 CDS YP_522125.1 89899654 3964068 complement(883332..884420) 1 NC_007908.1 tartrate dehydrogenase 884420 3964068 Rfer_0845 Rhodoferax ferrireducens T118 tartrate dehydrogenase YP_522125.1 883332 R 338969 CDS YP_522126.1 89899655 3964069 884519..885232 1 NC_007908.1 LysR family transcriptional regulator 885232 3964069 Rfer_0846 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522126.1 884519 D 338969 CDS YP_522127.1 89899656 3964070 885326..885832 1 NC_007908.1 hypothetical protein 885832 3964070 Rfer_0847 Rhodoferax ferrireducens T118 hypothetical protein YP_522127.1 885326 D 338969 CDS YP_522128.1 89899657 3964072 886015..886827 1 NC_007908.1 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 886827 3964072 Rfer_0849 Rhodoferax ferrireducens T118 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_522128.1 886015 D 338969 CDS YP_522129.1 89899658 3964073 886897..888195 1 NC_007908.1 lytic murein transglycosylase 888195 3964073 Rfer_0850 Rhodoferax ferrireducens T118 lytic murein transglycosylase YP_522129.1 886897 D 338969 CDS YP_522130.1 89899659 3964074 888399..888653 1 NC_007908.1 hypothetical protein 888653 3964074 Rfer_0851 Rhodoferax ferrireducens T118 hypothetical protein YP_522130.1 888399 D 338969 CDS YP_522131.1 89899660 3964075 888653..889444 1 NC_007908.1 methionine aminopeptidase 889444 3964075 Rfer_0852 Rhodoferax ferrireducens T118 methionine aminopeptidase YP_522131.1 888653 D 338969 CDS YP_522132.1 89899661 3963764 complement(889671..890111) 1 NC_007908.1 MerR family transcriptional regulator 890111 3963764 Rfer_0853 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_522132.1 889671 R 338969 CDS YP_522133.1 89899662 3963765 890186..892624 1 NC_007908.1 heavy metal translocating P-type ATPase 892624 3963765 Rfer_0854 Rhodoferax ferrireducens T118 heavy metal translocating P-type ATPase YP_522133.1 890186 D 338969 CDS YP_522134.1 89899663 3963766 892621..892839 1 NC_007908.1 hypothetical protein 892839 3963766 Rfer_0855 Rhodoferax ferrireducens T118 hypothetical protein YP_522134.1 892621 D 338969 CDS YP_522135.1 89899664 3963767 complement(893032..894225) 1 NC_007908.1 major facilitator transporter 894225 3963767 Rfer_0856 Rhodoferax ferrireducens T118 major facilitator transporter YP_522135.1 893032 R 338969 CDS YP_522136.1 89899665 3963768 complement(894431..895564) 1 NC_007908.1 hypothetical protein 895564 3963768 Rfer_0857 Rhodoferax ferrireducens T118 hypothetical protein YP_522136.1 894431 R 338969 CDS YP_522137.1 89899666 3963769 complement(895568..896704) 1 NC_007908.1 hypothetical protein 896704 3963769 Rfer_0858 Rhodoferax ferrireducens T118 hypothetical protein YP_522137.1 895568 R 338969 CDS YP_522138.1 89899667 3963770 complement(896701..897660) 1 NC_007908.1 ABC transporter-like protein 897660 3963770 Rfer_0859 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522138.1 896701 R 338969 CDS YP_522139.1 89899668 3963771 complement(897660..898607) 1 NC_007908.1 ABC transporter-like protein 898607 3963771 Rfer_0860 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522139.1 897660 R 338969 CDS YP_522140.1 89899669 3963772 complement(898607..899599) 1 NC_007908.1 secretion protein HlyD 899599 3963772 Rfer_0861 Rhodoferax ferrireducens T118 secretion protein HlyD YP_522140.1 898607 R 338969 CDS YP_522141.1 89899670 3963773 complement(899628..900164) 1 NC_007908.1 flavin reductase-like protein 900164 3963773 Rfer_0862 Rhodoferax ferrireducens T118 flavin reductase-like protein YP_522141.1 899628 R 338969 CDS YP_522142.1 89899671 3963774 complement(900166..902298) 1 NC_007908.1 molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 902298 3963774 Rfer_0863 Rhodoferax ferrireducens T118 molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase YP_522142.1 900166 R 338969 CDS YP_522143.1 89899672 3963775 complement(902295..902771) 1 NC_007908.1 (2Fe-2S)-binding protein 902771 3963775 Rfer_0864 Rhodoferax ferrireducens T118 (2Fe-2S)-binding protein YP_522143.1 902295 R 338969 CDS YP_522144.1 89899673 3963776 complement(902777..903100) 1 NC_007908.1 hypothetical protein 903100 3963776 Rfer_0865 Rhodoferax ferrireducens T118 hypothetical protein YP_522144.1 902777 R 338969 CDS YP_522145.1 89899674 3963777 903299..904327 1 NC_007908.1 hypothetical protein 904327 3963777 Rfer_0866 Rhodoferax ferrireducens T118 hypothetical protein YP_522145.1 903299 D 338969 CDS YP_522146.1 89899675 3963778 904336..904893 1 NC_007908.1 hypothetical protein 904893 3963778 Rfer_0867 Rhodoferax ferrireducens T118 hypothetical protein YP_522146.1 904336 D 338969 CDS YP_522147.1 89899676 3963779 complement(904970..906703) 1 NC_007908.1 carbamoyl-phosphate synthase L chain, ATP-binding 906703 3963779 Rfer_0868 Rhodoferax ferrireducens T118 carbamoyl-phosphate synthase L chain, ATP-binding YP_522147.1 904970 R 338969 CDS YP_522148.1 89899677 3963780 complement(906716..908365) 1 NC_007908.1 hypothetical protein 908365 3963780 Rfer_0869 Rhodoferax ferrireducens T118 hypothetical protein YP_522148.1 906716 R 338969 CDS YP_522149.1 89899678 3963781 complement(908362..909129) 1 NC_007908.1 LamB/YcsF family protein 909129 3963781 Rfer_0870 Rhodoferax ferrireducens T118 LamB/YcsF family protein YP_522149.1 908362 R 338969 CDS YP_522150.1 89899679 3963782 complement(909177..909845) 1 NC_007908.1 pyrrolidone-carboxylate peptidase 909845 3963782 Rfer_0871 Rhodoferax ferrireducens T118 pyrrolidone-carboxylate peptidase YP_522150.1 909177 R 338969 CDS YP_522151.1 89899680 3963783 complement(909858..910814) 1 NC_007908.1 hypothetical protein 910814 3963783 Rfer_0872 Rhodoferax ferrireducens T118 hypothetical protein YP_522151.1 909858 R 338969 CDS YP_522152.1 89899681 3963647 complement(910817..911560) 1 NC_007908.1 hypothetical protein 911560 3963647 Rfer_0873 Rhodoferax ferrireducens T118 hypothetical protein YP_522152.1 910817 R 338969 CDS YP_522153.1 89899682 3963648 911834..912514 1 NC_007908.1 GntR family transcriptional regulator 912514 3963648 Rfer_0874 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_522153.1 911834 D 338969 CDS YP_522154.1 89899683 3963649 complement(912959..914509) 1 NC_007908.1 hypothetical protein 914509 3963649 Rfer_0875 Rhodoferax ferrireducens T118 hypothetical protein YP_522154.1 912959 R 338969 CDS YP_522155.1 89899684 3963650 914755..915027 1 NC_007908.1 hypothetical protein 915027 3963650 Rfer_0876 Rhodoferax ferrireducens T118 hypothetical protein YP_522155.1 914755 D 338969 CDS YP_522156.1 89899685 3963651 complement(914998..915597) 1 NC_007908.1 hypothetical protein 915597 3963651 Rfer_0877 Rhodoferax ferrireducens T118 hypothetical protein YP_522156.1 914998 R 338969 CDS YP_522157.1 89899686 3963652 complement(915638..916822) 1 NC_007908.1 histidine kinase, HAMP protein 916822 3963652 Rfer_0878 Rhodoferax ferrireducens T118 histidine kinase, HAMP protein YP_522157.1 915638 R 338969 CDS YP_522158.1 89899687 3963653 complement(917327..918271) 1 NC_007908.1 LysR family transcriptional regulator 918271 3963653 Rfer_0879 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522158.1 917327 R 338969 CDS YP_522159.1 89899688 3963654 918477..920009 1 NC_007908.1 aldehyde dehydrogenase 920009 3963654 Rfer_0880 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_522159.1 918477 D 338969 CDS YP_522160.1 89899689 3963655 920015..921223 1 NC_007908.1 class I/II aminotransferase 921223 3963655 Rfer_0881 Rhodoferax ferrireducens T118 class I/II aminotransferase YP_522160.1 920015 D 338969 CDS YP_522161.1 89899690 3963656 921249..922925 1 NC_007908.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein 922925 3963656 Rfer_0882 Rhodoferax ferrireducens T118 thiamine pyrophosphate protein YP_522161.1 921249 D 338969 CDS YP_522162.1 89899691 3963657 complement(922994..924061) 1 NC_007908.1 extracellular solute-binding protein 924061 3963657 Rfer_0883 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522162.1 922994 R 338969 CDS YP_522163.1 89899692 3963658 complement(924115..925248) 1 NC_007908.1 FAD dependent oxidoreductase 925248 3963658 Rfer_0884 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_522163.1 924115 R 338969 CDS YP_522164.1 89899693 3963659 complement(925245..926639) 1 NC_007908.1 BFD-like protein (2Fe-2S)-binding protein 926639 3963659 Rfer_0885 Rhodoferax ferrireducens T118 BFD-like protein (2Fe-2S)-binding protein YP_522164.1 925245 R 338969 CDS YP_522165.1 89899694 3963660 complement(926636..926941) 1 NC_007908.1 hypothetical protein 926941 3963660 Rfer_0886 Rhodoferax ferrireducens T118 hypothetical protein YP_522165.1 926636 R 338969 CDS YP_522166.1 89899695 3963661 complement(926941..927732) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 927732 3963661 Rfer_0887 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522166.1 926941 R 338969 CDS YP_522167.1 89899696 3963662 complement(927738..928592) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 928592 3963662 Rfer_0888 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522167.1 927738 R 338969 CDS YP_522168.1 89899697 3963663 complement(928589..929695) 1 NC_007908.1 ABC transporter-like protein 929695 3963663 Rfer_0889 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522168.1 928589 R 338969 CDS YP_522169.1 89899698 3963664 929900..930814 1 NC_007908.1 IclR family transcriptional regulator 930814 3963664 Rfer_0890 Rhodoferax ferrireducens T118 IclR family transcriptional regulator YP_522169.1 929900 D 338969 CDS YP_522170.1 89899699 3963665 complement(931231..932550) 1 NC_007908.1 metal dependent phosphohydrolase 932550 3963665 Rfer_0891 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_522170.1 931231 R 338969 CDS YP_522171.1 89899700 3963608 complement(932585..933082) 1 NC_007908.1 hemerythrin HHE cation-binding protein 933082 3963608 Rfer_0892 Rhodoferax ferrireducens T118 hemerythrin HHE cation-binding protein YP_522171.1 932585 R 338969 CDS YP_522172.1 89899701 3963609 933467..934546 1 NC_007908.1 response regulator receiver sensor signal transduction histidine kinase 934546 3963609 Rfer_0893 Rhodoferax ferrireducens T118 response regulator receiver sensor signal transduction histidine kinase YP_522172.1 933467 D 338969 CDS YP_522173.1 89899702 3963610 934543..935196 1 NC_007908.1 two component LuxR family transcriptional regulator 935196 3963610 Rfer_0894 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_522173.1 934543 D 338969 CDS YP_522174.1 89899703 3963611 935309..937414 1 NC_007908.1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 937414 3963611 Rfer_0895 Rhodoferax ferrireducens T118 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_522174.1 935309 D 338969 CDS YP_522175.1 89899704 3963612 937478..939997 1 NC_007908.1 signal transduction histidine kinase 939997 3963612 Rfer_0896 Rhodoferax ferrireducens T118 signal transduction histidine kinase YP_522175.1 937478 D 338969 CDS YP_522176.1 89899705 3963613 940104..940499 1 NC_007908.1 response regulator receiver domain-containing protein 940499 3963613 Rfer_0897 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_522176.1 940104 D 338969 CDS YP_522177.1 89899706 3963614 940496..941635 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 941635 3963614 Rfer_0898 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_522177.1 940496 D 338969 CDS YP_522178.1 89899707 3963615 941645..942013 1 NC_007908.1 response regulator receiver domain-containing protein 942013 3963615 Rfer_0899 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_522178.1 941645 D 338969 CDS YP_522179.1 89899708 3963616 942030..942395 1 NC_007908.1 anti-sigma-factor antagonist domain-containing protein 942395 3963616 Rfer_0900 Rhodoferax ferrireducens T118 anti-sigma-factor antagonist domain-containing protein YP_522179.1 942030 D 338969 CDS YP_522180.1 89899709 3963617 942385..944547 1 NC_007908.1 CheA signal transduction histidine kinase 944547 3963617 Rfer_0901 Rhodoferax ferrireducens T118 CheA signal transduction histidine kinase YP_522180.1 942385 D 338969 CDS YP_522181.1 89899710 3963618 944595..946247 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 946247 3963618 Rfer_0902 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_522181.1 944595 D 338969 CDS YP_522182.1 89899711 3963619 946262..946819 1 NC_007908.1 CheW protein 946819 3963619 Rfer_0903 Rhodoferax ferrireducens T118 CheW protein YP_522182.1 946262 D 338969 CDS YP_522183.1 89899712 3963620 946987..947790 1 NC_007908.1 MCP methyltransferase, CheR-type 947790 3963620 Rfer_0904 Rhodoferax ferrireducens T118 MCP methyltransferase, CheR-type YP_522183.1 946987 D 338969 CDS YP_522184.1 89899713 3963621 947792..948313 1 NC_007908.1 CheD, stimulates methylation of MCP proteins 948313 3963621 Rfer_0905 Rhodoferax ferrireducens T118 CheD, stimulates methylation of MCP proteins YP_522184.1 947792 D 338969 CDS YP_522185.1 89899714 3963622 948310..949365 1 NC_007908.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 949365 3963622 Rfer_0906 Rhodoferax ferrireducens T118 chemotaxis-specific methylesterase YP_522185.1 948310 D 338969 CDS YP_522186.1 89899715 3963623 complement(949579..951069) 1 NC_007908.1 EmrB/QacA family drug resistance transporter 951069 3963623 Rfer_0907 Rhodoferax ferrireducens T118 EmrB/QacA family drug resistance transporter YP_522186.1 949579 R 338969 CDS YP_522187.1 89899716 3963624 951429..952508 1 NC_007908.1 patatin 952508 3963624 Rfer_0908 Rhodoferax ferrireducens T118 patatin YP_522187.1 951429 D 338969 CDS YP_522188.1 89899717 3963625 complement(952839..953297) 1 NC_007908.1 hypothetical protein 953297 3963625 Rfer_0909 Rhodoferax ferrireducens T118 hypothetical protein YP_522188.1 952839 R 338969 CDS YP_522189.1 89899718 3963626 complement(953987..954907) 1 NC_007908.1 LysR family transcriptional regulator 954907 3963626 Rfer_0910 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522189.1 953987 R 338969 CDS YP_522190.1 89899719 3963627 955014..955778 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 955778 3963627 Rfer_0911 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_522190.1 955014 D 338969 CDS YP_522191.1 89899720 3963666 complement(956098..956664) 1 NC_007908.1 YceI 956664 3963666 Rfer_0912 Rhodoferax ferrireducens T118 YceI YP_522191.1 956098 R 338969 CDS YP_522192.1 89899721 3963667 complement(956724..957362) 1 NC_007908.1 class I cytochrome c 957362 3963667 Rfer_0913 Rhodoferax ferrireducens T118 class I cytochrome c YP_522192.1 956724 R 338969 CDS YP_522193.1 89899722 3963668 complement(957390..958727) 1 NC_007908.1 putative cytochrome c1 signal peptide protein 958727 3963668 Rfer_0914 Rhodoferax ferrireducens T118 putative cytochrome c1 signal peptide protein YP_522193.1 957390 R 338969 CDS YP_522194.1 89899723 3963669 959857..960252 1 NC_007908.1 DoxX 960252 3963669 Rfer_0915 Rhodoferax ferrireducens T118 DoxX YP_522194.1 959857 D 338969 CDS YP_522195.1 89899724 3963670 complement(960370..960891) 1 NC_007908.1 hypothetical protein 960891 3963670 Rfer_0916 Rhodoferax ferrireducens T118 hypothetical protein YP_522195.1 960370 R 338969 CDS YP_522196.1 89899725 3963671 complement(961083..963341) 1 NC_007908.1 penicillin-binding protein 1A 963341 3963671 Rfer_0917 Rhodoferax ferrireducens T118 penicillin-binding protein 1A YP_522196.1 961083 R 338969 CDS YP_522197.1 89899726 3963673 964441..965469 1 NC_007908.1 glyceraldehyde 3-phosphate dehydrogenase 965469 3963673 Rfer_0919 Rhodoferax ferrireducens T118 glyceraldehyde 3-phosphate dehydrogenase YP_522197.1 964441 D 338969 CDS YP_522198.1 89899727 3963674 complement(966327..967571) 1 NC_007908.1 Serine-type D-Ala-D-Ala carboxypeptidase 967571 3963674 Rfer_0920 Rhodoferax ferrireducens T118 Serine-type D-Ala-D-Ala carboxypeptidase YP_522198.1 966327 R 338969 CDS YP_522199.1 89899728 3963675 complement(968221..968820) 1 NC_007908.1 two component LuxR family transcriptional regulator 968820 3963675 Rfer_0921 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_522199.1 968221 R 338969 CDS YP_522200.1 89899729 3963676 complement(968817..971000) 1 NC_007908.1 multi-sensor signal transduction histidine kinase 971000 3963676 Rfer_0922 Rhodoferax ferrireducens T118 multi-sensor signal transduction histidine kinase YP_522200.1 968817 R 338969 CDS YP_522201.1 89899730 3963677 971155..972624 1 NC_007908.1 anion transporter 972624 3963677 Rfer_0923 Rhodoferax ferrireducens T118 anion transporter YP_522201.1 971155 D 338969 CDS YP_522202.1 89899731 3963678 972858..973382 1 NC_007908.1 CheW protein 973382 3963678 Rfer_0924 Rhodoferax ferrireducens T118 CheW protein YP_522202.1 972858 D 338969 CDS YP_522203.1 89899732 3963679 973402..975060 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 975060 3963679 Rfer_0925 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_522203.1 973402 D 338969 CDS YP_522204.1 89899733 3963680 975082..975336 1 NC_007908.1 hypothetical protein 975336 3963680 Rfer_0926 Rhodoferax ferrireducens T118 hypothetical protein YP_522204.1 975082 D 338969 CDS YP_522205.1 89899734 3963681 complement(975621..977120) 1 NC_007908.1 N-acyl-D-amino-acid deacylase 977120 3963681 Rfer_0927 Rhodoferax ferrireducens T118 N-acyl-D-amino-acid deacylase YP_522205.1 975621 R 338969 CDS YP_522206.1 89899735 3963682 complement(977117..978049) 1 NC_007908.1 RpiR family transcriptional regulator 978049 3963682 Rfer_0928 Rhodoferax ferrireducens T118 RpiR family transcriptional regulator YP_522206.1 977117 R 338969 CDS YP_522207.1 89899736 3963683 complement(978104..979402) 1 NC_007908.1 D-serine deaminase 979402 3963683 Rfer_0929 Rhodoferax ferrireducens T118 D-serine deaminase YP_522207.1 978104 R 338969 CDS YP_522208.1 89899737 3963684 complement(979439..980407) 1 NC_007908.1 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 980407 3963684 Rfer_0930 Rhodoferax ferrireducens T118 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_522208.1 979439 R 338969 CDS YP_522209.1 89899738 3963685 complement(980404..981468) 1 NC_007908.1 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 981468 3963685 Rfer_0931 Rhodoferax ferrireducens T118 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_522209.1 980404 R 338969 CDS YP_522210.1 89899739 3963686 complement(981479..982318) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 982318 3963686 Rfer_0932 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522210.1 981479 R 338969 CDS YP_522211.1 89899740 3963687 complement(982323..983264) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 983264 3963687 Rfer_0933 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522211.1 982323 R 338969 CDS YP_522212.1 89899741 3963688 complement(983398..985011) 1 NC_007908.1 twin-arginine translocation pathway signal protein 985011 3963688 Rfer_0934 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_522212.1 983398 R 338969 CDS YP_522213.1 89899742 3963689 985194..985586 1 NC_007908.1 YjgF-like protein 985586 3963689 Rfer_0935 Rhodoferax ferrireducens T118 YjgF-like protein YP_522213.1 985194 D 338969 CDS YP_522214.1 89899743 3963690 985848..986774 1 NC_007908.1 PfkB 986774 3963690 Rfer_0936 Rhodoferax ferrireducens T118 PfkB YP_522214.1 985848 D 338969 CDS YP_522215.1 89899744 3963691 986810..987700 1 NC_007908.1 2-dehydro-3-deoxygalactonokinase 987700 3963691 Rfer_0937 Rhodoferax ferrireducens T118 2-dehydro-3-deoxygalactonokinase YP_522215.1 986810 D 338969 CDS YP_522216.1 89899745 3963692 987697..988332 1 NC_007908.1 KDPG and KHG aldolase 988332 3963692 Rfer_0938 Rhodoferax ferrireducens T118 KDPG and KHG aldolase YP_522216.1 987697 D 338969 CDS YP_522217.1 89899746 3963694 989158..990360 1 NC_007908.1 pyridoxal phosphate-dependent enzyme 990360 3963694 Rfer_0940 Rhodoferax ferrireducens T118 pyridoxal phosphate-dependent enzyme YP_522217.1 989158 D 338969 CDS YP_522218.1 89899747 3963695 990898..991716 1 NC_007908.1 2-dehydro-3-deoxyglucarate aldolase 991716 3963695 Rfer_0941 Rhodoferax ferrireducens T118 2-dehydro-3-deoxyglucarate aldolase YP_522218.1 990898 D 338969 CDS YP_522219.1 89899748 3963696 complement(992368..993336) 1 NC_007908.1 transposase, IS4 993336 3963696 Rfer_0942 Rhodoferax ferrireducens T118 transposase, IS4 YP_522219.1 992368 R 338969 CDS YP_522220.1 89899749 3963697 993425..993763 1 NC_007908.1 putative thioredoxin 993763 3963697 Rfer_0943 Rhodoferax ferrireducens T118 putative thioredoxin YP_522220.1 993425 D 338969 CDS YP_522221.1 89899750 3963698 993879..994565 1 NC_007908.1 hypothetical protein 994565 3963698 Rfer_0944 Rhodoferax ferrireducens T118 hypothetical protein YP_522221.1 993879 D 338969 CDS YP_522222.1 89899751 3963699 994819..995451 1 NC_007908.1 hypothetical protein 995451 3963699 Rfer_0945 Rhodoferax ferrireducens T118 hypothetical protein YP_522222.1 994819 D 338969 CDS YP_522223.1 89899752 3963700 complement(995861..996145) 1 NC_007908.1 hypothetical protein 996145 3963700 Rfer_0946 Rhodoferax ferrireducens T118 hypothetical protein YP_522223.1 995861 R 338969 CDS YP_522224.1 89899753 3963701 complement(996231..997277) 1 NC_007908.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 997277 3963701 Rfer_0947 Rhodoferax ferrireducens T118 mannonate dehydratase YP_522224.1 996231 R 338969 CDS YP_522225.1 89899754 3963703 997863..998918 1 NC_007908.1 2-keto-3-deoxy-galactonokinase 998918 3963703 Rfer_0949 Rhodoferax ferrireducens T118 2-keto-3-deoxy-galactonokinase YP_522225.1 997863 D 338969 CDS YP_522226.1 89899755 3963704 998931..999566 1 NC_007908.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 999566 3963704 Rfer_0950 Rhodoferax ferrireducens T118 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_522226.1 998931 D 338969 CDS YP_522227.1 89899756 3963589 999624..1000772 1 NC_007908.1 galactonate dehydratase 1000772 3963589 Rfer_0951 Rhodoferax ferrireducens T118 galactonate dehydratase YP_522227.1 999624 D 338969 CDS YP_522228.1 89899757 3963590 complement(1000933..1001748) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1001748 3963590 Rfer_0952 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522228.1 1000933 R 338969 CDS YP_522229.1 89899758 3963591 complement(1001759..1002637) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1002637 3963591 Rfer_0953 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522229.1 1001759 R 338969 CDS YP_522230.1 89899759 3963592 complement(1002799..1003992) 1 NC_007908.1 extracellular solute-binding protein 1003992 3963592 Rfer_0954 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522230.1 1002799 R 338969 CDS YP_522231.1 89899760 3963593 complement(1004031..1005128) 1 NC_007908.1 ABC transporter-like protein 1005128 3963593 Rfer_0955 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522231.1 1004031 R 338969 CDS YP_522232.1 89899761 3963594 complement(1005430..1005999) 1 NC_007908.1 carbohydrate kinase 1005999 3963594 Rfer_0956 Rhodoferax ferrireducens T118 carbohydrate kinase YP_522232.1 1005430 R 338969 CDS YP_522233.1 89899762 3963595 1006210..1007244 1 NC_007908.1 LacI family transcription regulator 1007244 3963595 Rfer_0957 Rhodoferax ferrireducens T118 LacI family transcription regulator YP_522233.1 1006210 D 338969 CDS YP_522234.1 89899763 3963597 1007924..1009516 1 NC_007908.1 radical SAM family protein 1009516 3963597 Rfer_0959 Rhodoferax ferrireducens T118 radical SAM family protein YP_522234.1 1007924 D 338969 CDS YP_522235.1 89899764 3963598 1010162..1011307 1 NC_007908.1 major facilitator transporter 1011307 3963598 Rfer_0960 Rhodoferax ferrireducens T118 major facilitator transporter YP_522235.1 1010162 D 338969 CDS YP_522236.1 89899765 3963599 complement(1011895..1012530) 1 NC_007908.1 KDPG and KHG aldolase 1012530 3963599 Rfer_0961 Rhodoferax ferrireducens T118 KDPG and KHG aldolase YP_522236.1 1011895 R 338969 CDS YP_522237.1 89899766 3963600 complement(1012527..1013417) 1 NC_007908.1 2-dehydro-3-deoxygalactonokinase 1013417 3963600 Rfer_0962 Rhodoferax ferrireducens T118 2-dehydro-3-deoxygalactonokinase YP_522237.1 1012527 R 338969 CDS YP_522238.1 89899767 3963601 complement(1013453..1014379) 1 NC_007908.1 PfkB 1014379 3963601 Rfer_0963 Rhodoferax ferrireducens T118 PfkB YP_522238.1 1013453 R 338969 CDS YP_522239.1 89899768 3963602 complement(1014597..1015868) 1 NC_007908.1 D-serine deaminase 1015868 3963602 Rfer_0964 Rhodoferax ferrireducens T118 D-serine deaminase YP_522239.1 1014597 R 338969 CDS YP_522240.1 89899769 3963603 1016453..1017295 1 NC_007908.1 extracellular solute-binding protein 1017295 3963603 Rfer_0965 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522240.1 1016453 D 338969 CDS YP_522241.1 89899770 3963604 1017422..1018084 1 NC_007908.1 amino acid ABC transporter permease 1018084 3963604 Rfer_0966 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_522241.1 1017422 D 338969 CDS YP_522242.1 89899771 3963605 1018090..1018758 1 NC_007908.1 amino acid ABC transporter permease 1018758 3963605 Rfer_0967 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_522242.1 1018090 D 338969 CDS YP_522243.1 89899772 3963606 1018771..1019541 1 NC_007908.1 ABC transporter-like protein 1019541 3963606 Rfer_0968 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522243.1 1018771 D 338969 CDS YP_522244.1 89899773 3963607 1019560..1019961 1 NC_007908.1 endoribonuclease L-PSP 1019961 3963607 Rfer_0969 Rhodoferax ferrireducens T118 endoribonuclease L-PSP YP_522244.1 1019560 D 338969 CDS YP_522245.1 89899774 3963569 1020016..1020792 1 NC_007908.1 IclR family transcriptional regulator 1020792 3963569 Rfer_0970 Rhodoferax ferrireducens T118 IclR family transcriptional regulator YP_522245.1 1020016 D 338969 CDS YP_522246.1 89899775 3963570 1021602..1021928 1 NC_007908.1 hypothetical protein 1021928 3963570 Rfer_0971 Rhodoferax ferrireducens T118 hypothetical protein YP_522246.1 1021602 D 338969 CDS YP_522247.1 89899776 3963571 1021985..1023211 1 NC_007908.1 major facilitator transporter 1023211 3963571 Rfer_0972 Rhodoferax ferrireducens T118 major facilitator transporter YP_522247.1 1021985 D 338969 CDS YP_522248.1 89899777 3963572 1023253..1023618 1 NC_007908.1 hypothetical protein 1023618 3963572 Rfer_0973 Rhodoferax ferrireducens T118 hypothetical protein YP_522248.1 1023253 D 338969 CDS YP_522249.1 89899778 3963573 1023985..1024407 1 NC_007908.1 phenylacetic acid degradation-like protein 1024407 3963573 Rfer_0974 Rhodoferax ferrireducens T118 phenylacetic acid degradation-like protein YP_522249.1 1023985 D 338969 CDS YP_522250.1 89899779 3963574 complement(1024514..1024906) 1 NC_007908.1 hypothetical protein 1024906 3963574 Rfer_0975 Rhodoferax ferrireducens T118 hypothetical protein YP_522250.1 1024514 R 338969 CDS YP_522251.1 89899780 3963575 complement(1025027..1025998) 1 NC_007908.1 ornithine cyclodeaminase 1025998 3963575 Rfer_0976 Rhodoferax ferrireducens T118 ornithine cyclodeaminase YP_522251.1 1025027 R 338969 CDS YP_522252.1 89899781 3963576 complement(1026019..1027158) 1 NC_007908.1 alanine racemase-like protein 1027158 3963576 Rfer_0977 Rhodoferax ferrireducens T118 alanine racemase-like protein YP_522252.1 1026019 R 338969 CDS YP_522253.1 89899782 3963577 complement(1027160..1028626) 1 NC_007908.1 N-acyl-D-amino-acid deacylase 1028626 3963577 Rfer_0978 Rhodoferax ferrireducens T118 N-acyl-D-amino-acid deacylase YP_522253.1 1027160 R 338969 CDS YP_522254.1 89899783 3963578 complement(1028610..1029557) 1 NC_007908.1 6-phosphogluconate dehydrogenase 1029557 3963578 Rfer_0979 Rhodoferax ferrireducens T118 6-phosphogluconate dehydrogenase YP_522254.1 1028610 R 338969 CDS YP_522255.1 89899784 3963579 complement(1029587..1030351) 1 NC_007908.1 class II aldolase/adducin-like protein 1030351 3963579 Rfer_0980 Rhodoferax ferrireducens T118 class II aldolase/adducin-like protein YP_522255.1 1029587 R 338969 CDS YP_522256.1 89899785 3963580 complement(1030341..1031327) 1 NC_007908.1 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 1031327 3963580 Rfer_0981 Rhodoferax ferrireducens T118 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_522256.1 1030341 R 338969 CDS YP_522257.1 89899786 3963581 complement(1031324..1032328) 1 NC_007908.1 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 1032328 3963581 Rfer_0982 Rhodoferax ferrireducens T118 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_522257.1 1031324 R 338969 CDS YP_522258.1 89899787 3963582 complement(1032325..1033176) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1033176 3963582 Rfer_0983 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522258.1 1032325 R 338969 CDS YP_522259.1 89899788 3963583 complement(1033173..1034114) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1034114 3963583 Rfer_0984 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522259.1 1033173 R 338969 CDS YP_522260.1 89899789 3963584 complement(1034175..1035710) 1 NC_007908.1 extracellular solute-binding protein 1035710 3963584 Rfer_0985 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522260.1 1034175 R 338969 CDS YP_522261.1 89899790 3963585 complement(1035834..1037279) 1 NC_007908.1 betaine-aldehyde dehydrogenase 1037279 3963585 Rfer_0986 Rhodoferax ferrireducens T118 betaine-aldehyde dehydrogenase YP_522261.1 1035834 R 338969 CDS YP_522262.1 89899791 3963586 1037433..1038353 1 NC_007908.1 LysR family transcriptional regulator 1038353 3963586 Rfer_0987 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522262.1 1037433 D 338969 CDS YP_522263.1 89899792 3963587 complement(1038444..1038614) 1 NC_007908.1 IS1327 transposase 1038614 3963587 Rfer_0988 Rhodoferax ferrireducens T118 IS1327 transposase YP_522263.1 1038444 R 338969 CDS YP_522264.1 89899793 3963588 complement(1038670..1040082) 1 NC_007908.1 amidase 1040082 3963588 Rfer_0989 Rhodoferax ferrireducens T118 amidase YP_522264.1 1038670 R 338969 CDS YP_522265.1 89899794 3963705 complement(1041023..1042651) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 1042651 3963705 Rfer_0990 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_522265.1 1041023 R 338969 CDS YP_522266.1 89899795 3963706 complement(1042665..1043189) 1 NC_007908.1 CheW protein 1043189 3963706 Rfer_0991 Rhodoferax ferrireducens T118 CheW protein YP_522266.1 1042665 R 338969 CDS YP_522267.1 89899796 3963707 complement(1043965..1044612) 1 NC_007908.1 hypothetical protein 1044612 3963707 Rfer_0992 Rhodoferax ferrireducens T118 hypothetical protein YP_522267.1 1043965 R 338969 CDS YP_522268.1 89899797 3963708 1045150..1046238 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 1046238 3963708 Rfer_0993 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_522268.1 1045150 D 338969 CDS YP_522269.1 89899798 3963709 1046280..1047428 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 1047428 3963709 Rfer_0994 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_522269.1 1046280 D 338969 CDS YP_522270.1 89899799 3963710 1047461..1048252 1 NC_007908.1 enoyl-CoA hydratase/isomerase 1048252 3963710 Rfer_0995 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_522270.1 1047461 D 338969 CDS YP_522271.1 89899800 3963711 complement(1048290..1051082) 1 NC_007908.1 ATP-dependent transcription regulator LuxR 1051082 3963711 Rfer_0996 Rhodoferax ferrireducens T118 ATP-dependent transcription regulator LuxR YP_522271.1 1048290 R 338969 CDS YP_522272.1 89899801 3963712 1051173..1052060 1 NC_007908.1 palmitoyl-CoA hydrolase 1052060 3963712 Rfer_0997 Rhodoferax ferrireducens T118 palmitoyl-CoA hydrolase YP_522272.1 1051173 D 338969 CDS YP_522273.1 89899802 3963713 1052197..1052979 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 1052979 3963713 Rfer_0998 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_522273.1 1052197 D 338969 CDS YP_522274.1 89899803 3963715 1053844..1055022 1 NC_007908.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1055022 3963715 Rfer_1000 Rhodoferax ferrireducens T118 acetyl-CoA acetyltransferase YP_522274.1 1053844 D 338969 CDS YP_522275.1 89899804 3963716 1055044..1055850 1 NC_007908.1 ABC transporter-like protein 1055850 3963716 Rfer_1001 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522275.1 1055044 D 338969 CDS YP_522276.1 89899805 3963717 1055847..1056563 1 NC_007908.1 ABC transporter-like protein 1056563 3963717 Rfer_1002 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522276.1 1055847 D 338969 CDS YP_522277.1 89899806 3963718 1056576..1057448 1 NC_007908.1 inner-membrane translocator 1057448 3963718 Rfer_1003 Rhodoferax ferrireducens T118 inner-membrane translocator YP_522277.1 1056576 D 338969 CDS YP_522278.1 89899807 3963719 1057452..1058453 1 NC_007908.1 inner-membrane translocator 1058453 3963719 Rfer_1004 Rhodoferax ferrireducens T118 inner-membrane translocator YP_522278.1 1057452 D 338969 CDS YP_522279.1 89899808 3963720 1058593..1059816 1 NC_007908.1 extracellular ligand-binding receptor 1059816 3963720 Rfer_1005 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_522279.1 1058593 D 338969 CDS YP_522280.1 89899809 3963721 1059922..1061562 1 NC_007908.1 AMP-dependent synthetase and ligase 1061562 3963721 Rfer_1006 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_522280.1 1059922 D 338969 CDS YP_522281.1 89899810 3963722 1061696..1062526 1 NC_007908.1 enoyl-CoA hydratase/isomerase 1062526 3963722 Rfer_1007 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_522281.1 1061696 D 338969 CDS YP_522282.1 89899811 3963723 1062566..1063537 1 NC_007908.1 2-nitropropane dioxygenase 1063537 3963723 Rfer_1008 Rhodoferax ferrireducens T118 2-nitropropane dioxygenase YP_522282.1 1062566 D 338969 CDS YP_522283.1 89899812 3963724 1063632..1064438 1 NC_007908.1 enoyl-CoA hydratase/isomerase 1064438 3963724 Rfer_1009 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_522283.1 1063632 D 338969 CDS YP_522284.1 89899813 3963725 1064435..1065313 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1065313 3963725 Rfer_1010 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_522284.1 1064435 D 338969 CDS YP_522285.1 89899814 3963726 1065637..1067949 1 NC_007908.1 TetR family transcriptional regulator 1067949 3963726 Rfer_1011 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_522285.1 1065637 D 338969 CDS YP_522286.1 89899815 3963727 1068094..1069410 1 NC_007908.1 extracellular ligand-binding receptor 1069410 3963727 Rfer_1012 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_522286.1 1068094 D 338969 CDS YP_522287.1 89899816 3963728 1069452..1070348 1 NC_007908.1 inner-membrane translocator 1070348 3963728 Rfer_1013 Rhodoferax ferrireducens T118 inner-membrane translocator YP_522287.1 1069452 D 338969 CDS YP_522288.1 89899817 3963729 1070348..1071331 1 NC_007908.1 inner-membrane translocator 1071331 3963729 Rfer_1014 Rhodoferax ferrireducens T118 inner-membrane translocator YP_522288.1 1070348 D 338969 CDS YP_522289.1 89899818 3963730 1071328..1072077 1 NC_007908.1 ABC transporter-like protein 1072077 3963730 Rfer_1015 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522289.1 1071328 D 338969 CDS YP_522290.1 89899819 3963731 1072074..1072748 1 NC_007908.1 ABC transporter-like protein 1072748 3963731 Rfer_1016 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522290.1 1072074 D 338969 CDS YP_522291.1 89899820 3963732 1072745..1074403 1 NC_007908.1 O-succinylbenzoate--CoA ligase 1074403 3963732 Rfer_1017 Rhodoferax ferrireducens T118 O-succinylbenzoate--CoA ligase YP_522291.1 1072745 D 338969 CDS YP_522292.1 89899821 3963733 1074400..1075476 1 NC_007908.1 aminoglycoside phosphotransferase 1075476 3963733 Rfer_1018 Rhodoferax ferrireducens T118 aminoglycoside phosphotransferase YP_522292.1 1074400 D 338969 CDS YP_522293.1 89899822 3963734 1075497..1076750 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 1076750 3963734 Rfer_1019 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_522293.1 1075497 D 338969 CDS YP_522294.1 89899823 3963735 1076800..1077192 1 NC_007908.1 hypothetical protein 1077192 3963735 Rfer_1020 Rhodoferax ferrireducens T118 hypothetical protein YP_522294.1 1076800 D 338969 CDS YP_522295.1 89899824 3963736 complement(1077390..1080545) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1080545 3963736 Rfer_1021 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_522295.1 1077390 R 338969 CDS YP_522296.1 89899825 3963737 1080906..1081232 1 NC_007908.1 hypothetical protein 1081232 3963737 Rfer_1022 Rhodoferax ferrireducens T118 hypothetical protein YP_522296.1 1080906 D 338969 CDS YP_522297.1 89899826 3963738 1081289..1082515 1 NC_007908.1 major facilitator transporter 1082515 3963738 Rfer_1023 Rhodoferax ferrireducens T118 major facilitator transporter YP_522297.1 1081289 D 338969 CDS YP_522298.1 89899827 3963740 complement(1084116..1085558) 1 NC_007908.1 aldehyde dehydrogenase 1085558 3963740 Rfer_1025 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_522298.1 1084116 R 338969 CDS YP_522299.1 89899828 3963741 complement(1085585..1086514) 1 NC_007908.1 dihydrodipicolinate synthetase 1086514 3963741 Rfer_1026 Rhodoferax ferrireducens T118 dihydrodipicolinate synthetase YP_522299.1 1085585 R 338969 CDS YP_522300.1 89899829 3963742 complement(1086581..1088110) 1 NC_007908.1 galactarate dehydratase 1088110 3963742 Rfer_1027 Rhodoferax ferrireducens T118 galactarate dehydratase YP_522300.1 1086581 R 338969 CDS YP_522301.1 89899830 3963743 complement(1088167..1089045) 1 NC_007908.1 6-phosphogluconate dehydrogenase 1089045 3963743 Rfer_1028 Rhodoferax ferrireducens T118 6-phosphogluconate dehydrogenase YP_522301.1 1088167 R 338969 CDS YP_522302.1 89899831 3963628 complement(1089099..1089896) 1 NC_007908.1 extracellular solute-binding protein 1089896 3963628 Rfer_1029 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522302.1 1089099 R 338969 CDS YP_522303.1 89899832 3963629 complement(1089906..1090625) 1 NC_007908.1 ABC transporter-like protein 1090625 3963629 Rfer_1030 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522303.1 1089906 R 338969 CDS YP_522304.1 89899833 3963630 complement(1090627..1091271) 1 NC_007908.1 amino acid ABC transporter permease 1091271 3963630 Rfer_1031 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_522304.1 1090627 R 338969 CDS YP_522305.1 89899834 3963631 complement(1091283..1091966) 1 NC_007908.1 amino acid ABC transporter permease 1091966 3963631 Rfer_1032 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_522305.1 1091283 R 338969 CDS YP_522306.1 89899835 3963632 1092213..1093238 1 NC_007908.1 GntR family transcriptional regulator 1093238 3963632 Rfer_1033 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_522306.1 1092213 D 338969 CDS YP_522307.1 89899836 3963633 complement(1093936..1095138) 1 NC_007908.1 beta-ketoadipyl CoA thiolase 1095138 3963633 Rfer_1034 Rhodoferax ferrireducens T118 beta-ketoadipyl CoA thiolase YP_522307.1 1093936 R 338969 CDS YP_522308.1 89899837 3963634 complement(1095160..1095801) 1 NC_007908.1 3-oxoacid CoA-transferase subunit B 1095801 3963634 Rfer_1035 Rhodoferax ferrireducens T118 3-oxoacid CoA-transferase subunit B YP_522308.1 1095160 R 338969 CDS YP_522309.1 89899838 3963635 complement(1095803..1096504) 1 NC_007908.1 3-oxoacid CoA-transferase subunit A 1096504 3963635 Rfer_1036 Rhodoferax ferrireducens T118 3-oxoacid CoA-transferase subunit A YP_522309.1 1095803 R 338969 CDS YP_522310.1 89899839 3963636 complement(1096537..1097418) 1 NC_007908.1 class IV aminotransferase 1097418 3963636 Rfer_1037 Rhodoferax ferrireducens T118 class IV aminotransferase YP_522310.1 1096537 R 338969 CDS YP_522311.1 89899840 3963637 complement(1097445..1098128) 1 NC_007908.1 Asp/Glu racemase 1098128 3963637 Rfer_1038 Rhodoferax ferrireducens T118 Asp/Glu racemase YP_522311.1 1097445 R 338969 CDS YP_522312.1 89899841 3963638 complement(1098132..1100729) 1 NC_007908.1 TRAP transporter, 4TM/12TM fusion protein 1100729 3963638 Rfer_1039 Rhodoferax ferrireducens T118 TRAP transporter, 4TM/12TM fusion protein YP_522312.1 1098132 R 338969 CDS YP_522313.1 89899842 3963639 complement(1100779..1101753) 1 NC_007908.1 TRAP transporter solute receptor TAXI family protein 1101753 3963639 Rfer_1040 Rhodoferax ferrireducens T118 TRAP transporter solute receptor TAXI family protein YP_522313.1 1100779 R 338969 CDS YP_522314.1 89899843 3963640 complement(1101784..1103124) 1 NC_007908.1 hypothetical protein 1103124 3963640 Rfer_1041 Rhodoferax ferrireducens T118 hypothetical protein YP_522314.1 1101784 R 338969 CDS YP_522315.1 89899844 3963641 complement(1103130..1104035) 1 NC_007908.1 RpiR family transcriptional regulator 1104035 3963641 Rfer_1042 Rhodoferax ferrireducens T118 RpiR family transcriptional regulator YP_522315.1 1103130 R 338969 CDS YP_522316.1 89899845 3963642 complement(1104465..1104794) 1 NC_007908.1 hypothetical protein 1104794 3963642 Rfer_1043 Rhodoferax ferrireducens T118 hypothetical protein YP_522316.1 1104465 R 338969 CDS YP_522317.1 89899846 3963644 1105658..1106251 1 NC_007908.1 hypothetical protein 1106251 3963644 Rfer_1045 Rhodoferax ferrireducens T118 hypothetical protein YP_522317.1 1105658 D 338969 CDS YP_522318.1 89899847 3963645 1107086..1107919 1 NC_007908.1 hypothetical protein 1107919 3963645 Rfer_1046 Rhodoferax ferrireducens T118 hypothetical protein YP_522318.1 1107086 D 338969 CDS YP_522319.1 89899848 3963646 1108494..1109777 1 NC_007908.1 hypothetical protein 1109777 3963646 Rfer_1047 Rhodoferax ferrireducens T118 hypothetical protein YP_522319.1 1108494 D 338969 CDS YP_522320.1 89899849 3963744 1110315..1112378 1 NC_007908.1 peptidyl-dipeptidase Dcp 1112378 3963744 Rfer_1048 Rhodoferax ferrireducens T118 peptidyl-dipeptidase Dcp YP_522320.1 1110315 D 338969 CDS YP_522321.1 89899850 3963745 complement(1112552..1113382) 1 NC_007908.1 hypothetical protein 1113382 3963745 Rfer_1049 Rhodoferax ferrireducens T118 hypothetical protein YP_522321.1 1112552 R 338969 CDS YP_522322.1 89899851 3963746 complement(1113648..1114187) 1 NC_007908.1 hypothetical protein 1114187 3963746 Rfer_1050 Rhodoferax ferrireducens T118 hypothetical protein YP_522322.1 1113648 R 338969 CDS YP_522323.1 89899852 3963747 complement(1114202..1114894) 1 NC_007908.1 hypothetical protein 1114894 3963747 Rfer_1051 Rhodoferax ferrireducens T118 hypothetical protein YP_522323.1 1114202 R 338969 CDS YP_522324.1 89899853 3963748 complement(1115422..1116414) 1 NC_007908.1 hypothetical protein 1116414 3963748 Rfer_1052 Rhodoferax ferrireducens T118 hypothetical protein YP_522324.1 1115422 R 338969 CDS YP_522325.1 89899854 3963749 complement(1116648..1118006) 1 NC_007908.1 hypothetical protein 1118006 3963749 Rfer_1053 Rhodoferax ferrireducens T118 hypothetical protein YP_522325.1 1116648 R 338969 CDS YP_522326.1 89899855 3963750 complement(1118003..1120045) 1 NC_007908.1 hypothetical protein 1120045 3963750 Rfer_1054 Rhodoferax ferrireducens T118 hypothetical protein YP_522326.1 1118003 R 338969 CDS YP_522327.1 89899856 3963751 complement(1120047..1121090) 1 NC_007908.1 transposase, TnsA-like protein 1121090 3963751 Rfer_1055 Rhodoferax ferrireducens T118 transposase, TnsA-like protein YP_522327.1 1120047 R 338969 CDS YP_522328.1 89899857 3963752 1121704..1122960 1 NC_007908.1 hypothetical protein 1122960 3963752 Rfer_1056 Rhodoferax ferrireducens T118 hypothetical protein YP_522328.1 1121704 D 338969 CDS YP_522329.1 89899858 3963753 1123250..1124821 1 NC_007908.1 hypothetical protein 1124821 3963753 Rfer_1057 Rhodoferax ferrireducens T118 hypothetical protein YP_522329.1 1123250 D 338969 CDS YP_522330.1 89899859 3963754 complement(1124818..1126254) 1 NC_007908.1 hypothetical protein 1126254 3963754 Rfer_1058 Rhodoferax ferrireducens T118 hypothetical protein YP_522330.1 1124818 R 338969 CDS YP_522331.1 89899860 3963755 1126795..1128345 1 NC_007908.1 N-6 DNA methylase 1128345 3963755 Rfer_1059 Rhodoferax ferrireducens T118 N-6 DNA methylase YP_522331.1 1126795 D 338969 CDS YP_522332.1 89899861 3963756 1128342..1129535 1 NC_007908.1 restriction modification system DNA specificity subunit 1129535 3963756 Rfer_1060 Rhodoferax ferrireducens T118 restriction modification system DNA specificity subunit YP_522332.1 1128342 D 338969 CDS YP_522333.1 89899862 3963757 1129538..1131265 1 NC_007908.1 hypothetical protein 1131265 3963757 Rfer_1061 Rhodoferax ferrireducens T118 hypothetical protein YP_522333.1 1129538 D 338969 CDS YP_522334.1 89899863 3963758 1131262..1134678 1 NC_007908.1 type III restriction enzyme, res subunit 1134678 3963758 Rfer_1062 Rhodoferax ferrireducens T118 type III restriction enzyme, res subunit YP_522334.1 1131262 D 338969 CDS YP_522335.1 89899864 3963759 complement(1135163..1136206) 1 NC_007908.1 thymidylate synthase 1136206 3963759 Rfer_1063 Rhodoferax ferrireducens T118 thymidylate synthase YP_522335.1 1135163 R 338969 CDS YP_522336.1 89899865 3963760 complement(1136634..1137260) 1 NC_007908.1 hypothetical protein 1137260 3963760 Rfer_1064 Rhodoferax ferrireducens T118 hypothetical protein YP_522336.1 1136634 R 338969 CDS YP_522337.1 89899866 3963761 complement(1137270..1137743) 1 NC_007908.1 hypothetical protein 1137743 3963761 Rfer_1065 Rhodoferax ferrireducens T118 hypothetical protein YP_522337.1 1137270 R 338969 CDS YP_522338.1 89899867 3963762 1138013..1138690 1 NC_007908.1 hypothetical protein 1138690 3963762 Rfer_1066 Rhodoferax ferrireducens T118 hypothetical protein YP_522338.1 1138013 D 338969 CDS YP_522339.1 89899868 3963763 complement(1138722..1140752) 1 NC_007908.1 hypothetical protein 1140752 3963763 Rfer_1067 Rhodoferax ferrireducens T118 hypothetical protein YP_522339.1 1138722 R 338969 CDS YP_522340.1 89899869 3963491 1141525..1142967 1 NC_007908.1 hypothetical protein 1142967 3963491 Rfer_1068 Rhodoferax ferrireducens T118 hypothetical protein YP_522340.1 1141525 D 338969 CDS YP_522341.1 89899870 3963492 1143037..1143630 1 NC_007908.1 hypothetical protein 1143630 3963492 Rfer_1069 Rhodoferax ferrireducens T118 hypothetical protein YP_522341.1 1143037 D 338969 CDS YP_522342.1 89899871 3963493 1143636..1144187 1 NC_007908.1 hypothetical protein 1144187 3963493 Rfer_1070 Rhodoferax ferrireducens T118 hypothetical protein YP_522342.1 1143636 D 338969 CDS YP_522343.1 89899872 3963494 complement(1144230..1145075) 1 NC_007908.1 hypothetical protein 1145075 3963494 Rfer_1071 Rhodoferax ferrireducens T118 hypothetical protein YP_522343.1 1144230 R 338969 CDS YP_522344.1 89899873 3963495 complement(1145081..1146352) 1 NC_007908.1 hypothetical protein 1146352 3963495 Rfer_1072 Rhodoferax ferrireducens T118 hypothetical protein YP_522344.1 1145081 R 338969 CDS YP_522345.1 89899874 3963496 complement(1146384..1147316) 1 NC_007908.1 phage Gp37Gp68 1147316 3963496 Rfer_1073 Rhodoferax ferrireducens T118 phage Gp37Gp68 YP_522345.1 1146384 R 338969 CDS YP_522346.1 89899875 3963497 complement(1147882..1149765) 1 NC_007908.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1149765 3963497 Rfer_1074 Rhodoferax ferrireducens T118 glucosamine--fructose-6-phosphate aminotransferase YP_522346.1 1147882 R 338969 CDS YP_522347.1 89899876 3963498 1150090..1150926 1 NC_007908.1 ABC transporter-like protein 1150926 3963498 Rfer_1075 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522347.1 1150090 D 338969 CDS YP_522348.1 89899877 3963499 1150926..1151630 1 NC_007908.1 ABC transporter-like protein 1151630 3963499 Rfer_1076 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522348.1 1150926 D 338969 CDS YP_522349.1 89899878 3963500 1151700..1152893 1 NC_007908.1 extracellular ligand-binding receptor 1152893 3963500 Rfer_1077 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_522349.1 1151700 D 338969 CDS YP_522350.1 89899879 3963501 1152971..1153855 1 NC_007908.1 inner-membrane translocator 1153855 3963501 Rfer_1078 Rhodoferax ferrireducens T118 inner-membrane translocator YP_522350.1 1152971 D 338969 CDS YP_522351.1 89899880 3963502 1153859..1154860 1 NC_007908.1 inner-membrane translocator 1154860 3963502 Rfer_1079 Rhodoferax ferrireducens T118 inner-membrane translocator YP_522351.1 1153859 D 338969 CDS YP_522352.1 89899881 3963503 1154951..1155853 1 NC_007908.1 hypothetical protein 1155853 3963503 Rfer_1080 Rhodoferax ferrireducens T118 hypothetical protein YP_522352.1 1154951 D 338969 CDS YP_522353.1 89899882 3963504 1155899..1156384 1 NC_007908.1 AsnC family transcriptional regulator 1156384 3963504 Rfer_1081 Rhodoferax ferrireducens T118 AsnC family transcriptional regulator YP_522353.1 1155899 D 338969 CDS YP_522354.1 89899883 3963505 complement(1156407..1157168) 1 NC_007908.1 histidine kinase 1157168 3963505 Rfer_1082 Rhodoferax ferrireducens T118 histidine kinase YP_522354.1 1156407 R 338969 CDS YP_522355.1 89899884 3963506 complement(1157165..1158610) 1 NC_007908.1 UDP-N-acetylglucosamine pyrophosphorylase 1158610 3963506 Rfer_1083 Rhodoferax ferrireducens T118 UDP-N-acetylglucosamine pyrophosphorylase YP_522355.1 1157165 R 338969 CDS YP_522356.1 89899885 3963507 1158783..1160201 1 NC_007908.1 L-serine dehydratase 1 1160201 3963507 Rfer_1084 Rhodoferax ferrireducens T118 L-serine dehydratase 1 YP_522356.1 1158783 D 338969 CDS YP_522357.1 89899886 3963508 complement(1160316..1160807) 1 NC_007908.1 hypothetical protein 1160807 3963508 Rfer_1085 Rhodoferax ferrireducens T118 hypothetical protein YP_522357.1 1160316 R 338969 CDS YP_522358.1 89899887 3963509 1160937..1161899 1 NC_007908.1 LysR family transcriptional regulator 1161899 3963509 Rfer_1086 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522358.1 1160937 D 338969 CDS YP_522359.1 89899888 3963471 complement(1161909..1162508) 1 NC_007908.1 5-formyltetrahydrofolate cyclo-ligase 1162508 3963471 Rfer_1087 Rhodoferax ferrireducens T118 5-formyltetrahydrofolate cyclo-ligase YP_522359.1 1161909 R 338969 CDS YP_522360.1 89899889 3963472 1162563..1164524 1 NC_007908.1 lytic transglycosylase catalytic subunit 1164524 3963472 Rfer_1088 Rhodoferax ferrireducens T118 lytic transglycosylase catalytic subunit YP_522360.1 1162563 D 338969 CDS YP_522361.1 89899890 3963473 1165050..1165733 1 NC_007908.1 glutathione S-transferase-like protein 1165733 3963473 Rfer_1089 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_522361.1 1165050 D 338969 CDS YP_522362.1 89899891 3963474 1165735..1167036 1 NC_007908.1 metal dependent phosphohydrolase 1167036 3963474 Rfer_1090 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_522362.1 1165735 D 338969 CDS YP_522363.1 89899892 3963475 1167073..1167792 1 NC_007908.1 two component transcriptional regulator 1167792 3963475 Rfer_1091 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_522363.1 1167073 D 338969 CDS YP_522364.1 89899893 3963476 1167789..1169231 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 1169231 3963476 Rfer_1092 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_522364.1 1167789 D 338969 CDS YP_522365.1 89899894 3963477 1169265..1171460 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1171460 3963477 Rfer_1093 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_522365.1 1169265 D 338969 CDS YP_522366.1 89899895 3963478 complement(1171457..1172527) 1 NC_007908.1 ABC transporter-like protein 1172527 3963478 Rfer_1094 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522366.1 1171457 R 338969 CDS YP_522367.1 89899896 3963479 complement(1172532..1173386) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1173386 3963479 Rfer_1095 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522367.1 1172532 R 338969 CDS YP_522368.1 89899897 3963480 complement(1173401..1174285) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1174285 3963480 Rfer_1096 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522368.1 1173401 R 338969 CDS YP_522369.1 89899898 3963481 complement(1174624..1175874) 1 NC_007908.1 extracellular solute-binding protein 1175874 3963481 Rfer_1097 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522369.1 1174624 R 338969 CDS YP_522370.1 89899899 3963482 1176129..1177388 1 NC_007908.1 sodium/hydrogen exchanger 1177388 3963482 Rfer_1098 Rhodoferax ferrireducens T118 sodium/hydrogen exchanger YP_522370.1 1176129 D 338969 CDS YP_522371.1 89899900 3963483 1177505..1178767 1 NC_007908.1 extracellular solute-binding protein 1178767 3963483 Rfer_1099 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522371.1 1177505 D 338969 CDS YP_522372.1 89899901 3963484 1178809..1179744 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1179744 3963484 Rfer_1100 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522372.1 1178809 D 338969 CDS YP_522373.1 89899902 3963485 1179749..1180561 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1180561 3963485 Rfer_1101 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522373.1 1179749 D 338969 CDS YP_522374.1 89899903 3963486 1180574..1181920 1 NC_007908.1 beta-glucosidase 1181920 3963486 Rfer_1102 Rhodoferax ferrireducens T118 beta-glucosidase YP_522374.1 1180574 D 338969 CDS YP_522375.1 89899904 3963487 1181922..1182995 1 NC_007908.1 ABC transporter-like protein 1182995 3963487 Rfer_1103 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522375.1 1181922 D 338969 CDS YP_522376.1 89899905 3963488 1183095..1184501 1 NC_007908.1 glycoside hydrolase family protein 1184501 3963488 Rfer_1104 Rhodoferax ferrireducens T118 glycoside hydrolase family protein YP_522376.1 1183095 D 338969 CDS YP_522377.1 89899906 3963489 1184641..1185402 1 NC_007908.1 phospholipase/carboxylesterase 1185402 3963489 Rfer_1105 Rhodoferax ferrireducens T118 phospholipase/carboxylesterase YP_522377.1 1184641 D 338969 CDS YP_522378.1 89899907 3963490 complement(1185479..1186945) 1 NC_007908.1 glycoside hydrolase family protein 1186945 3963490 Rfer_1106 Rhodoferax ferrireducens T118 glycoside hydrolase family protein YP_522378.1 1185479 R 338969 CDS YP_522379.1 89899908 3964345 complement(1187012..1188085) 1 NC_007908.1 ABC transporter-like protein 1188085 3964345 Rfer_1107 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522379.1 1187012 R 338969 CDS YP_522380.1 89899909 3964346 complement(1188090..1188983) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1188983 3964346 Rfer_1108 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522380.1 1188090 R 338969 CDS YP_522381.1 89899910 3964347 complement(1188980..1189876) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1189876 3964347 Rfer_1109 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522381.1 1188980 R 338969 CDS YP_522382.1 89899911 3964348 complement(1189895..1191130) 1 NC_007908.1 extracellular solute-binding protein 1191130 3964348 Rfer_1110 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522382.1 1189895 R 338969 CDS YP_522383.1 89899912 3964349 complement(1191207..1192577) 1 NC_007908.1 beta-glucosidase 1192577 3964349 Rfer_1111 Rhodoferax ferrireducens T118 beta-glucosidase YP_522383.1 1191207 R 338969 CDS YP_522384.1 89899913 3964350 complement(1192717..1193727) 1 NC_007908.1 LacI family transcription regulator 1193727 3964350 Rfer_1112 Rhodoferax ferrireducens T118 LacI family transcription regulator YP_522384.1 1192717 R 338969 CDS YP_522385.1 89899914 3964351 complement(1193724..1196324) 1 NC_007908.1 glycoside hydrolase family protein 1196324 3964351 Rfer_1113 Rhodoferax ferrireducens T118 glycoside hydrolase family protein YP_522385.1 1193724 R 338969 CDS YP_522386.1 89899915 3964352 complement(1196401..1197909) 1 NC_007908.1 tryptophan halogenase 1197909 3964352 Rfer_1114 Rhodoferax ferrireducens T118 tryptophan halogenase YP_522386.1 1196401 R 338969 CDS YP_522387.1 89899916 3964353 complement(1198050..1200881) 1 NC_007908.1 TonB-dependent receptor 1200881 3964353 Rfer_1115 Rhodoferax ferrireducens T118 TonB-dependent receptor YP_522387.1 1198050 R 338969 CDS YP_522388.1 89899917 3964354 complement(1201199..1202212) 1 NC_007908.1 glycerophosphoryl diester phosphodiesterase 1202212 3964354 Rfer_1116 Rhodoferax ferrireducens T118 glycerophosphoryl diester phosphodiesterase YP_522388.1 1201199 R 338969 CDS YP_522389.1 89899918 3964355 complement(1202236..1202895) 1 NC_007908.1 hypothetical protein 1202895 3964355 Rfer_1117 Rhodoferax ferrireducens T118 hypothetical protein YP_522389.1 1202236 R 338969 CDS YP_522390.1 89899919 3964356 complement(1202892..1203320) 1 NC_007908.1 biopolymer transport protein ExbD/TolR 1203320 3964356 Rfer_1118 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_522390.1 1202892 R 338969 CDS YP_522391.1 89899920 3964357 complement(1203344..1203778) 1 NC_007908.1 biopolymer transport protein ExbD/TolR 1203778 3964357 Rfer_1119 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_522391.1 1203344 R 338969 CDS YP_522392.1 89899921 3964358 complement(1203822..1204682) 1 NC_007908.1 MotA/TolQ/ExbB proton channel 1204682 3964358 Rfer_1120 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_522392.1 1203822 R 338969 CDS YP_522393.1 89899922 3964359 complement(1204836..1205828) 1 NC_007908.1 glucokinase 1205828 3964359 Rfer_1121 Rhodoferax ferrireducens T118 glucokinase YP_522393.1 1204836 R 338969 CDS YP_522394.1 89899923 3964360 complement(1205881..1206249) 1 NC_007908.1 mannose-6-phosphate isomerase 1206249 3964360 Rfer_1122 Rhodoferax ferrireducens T118 mannose-6-phosphate isomerase YP_522394.1 1205881 R 338969 CDS YP_522395.1 89899924 3964361 complement(1206323..1206760) 1 NC_007908.1 thioredoxin 1206760 3964361 Rfer_1123 Rhodoferax ferrireducens T118 thioredoxin YP_522395.1 1206323 R 338969 CDS YP_522396.1 89899925 3964362 complement(1206902..1207750) 1 NC_007908.1 RpiR family transcriptional regulator 1207750 3964362 Rfer_1124 Rhodoferax ferrireducens T118 RpiR family transcriptional regulator YP_522396.1 1206902 R 338969 CDS YP_522397.1 89899926 3964363 complement(1207781..1209235) 1 NC_007908.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1209235 3964363 Rfer_1125 Rhodoferax ferrireducens T118 glucose-6-phosphate 1-dehydrogenase YP_522397.1 1207781 R 338969 CDS YP_522398.1 89899927 3963432 1209450..1210397 1 NC_007908.1 transaldolase B 1210397 3963432 Rfer_1126 Rhodoferax ferrireducens T118 transaldolase B YP_522398.1 1209450 D 338969 CDS YP_522399.1 89899928 3963433 1210419..1211987 1 NC_007908.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1211987 pgi 3963433 pgi Rhodoferax ferrireducens T118 glucose-6-phosphate isomerase YP_522399.1 1210419 D 338969 CDS YP_522400.1 89899929 3963434 1212121..1212765 1 NC_007908.1 HAD family hydrolase 1212765 3963434 Rfer_1128 Rhodoferax ferrireducens T118 HAD family hydrolase YP_522400.1 1212121 D 338969 CDS YP_522401.1 89899930 3963435 complement(1212732..1213619) 1 NC_007908.1 bem46 protein 1213619 3963435 Rfer_1129 Rhodoferax ferrireducens T118 bem46 protein YP_522401.1 1212732 R 338969 CDS YP_522402.1 89899931 3963436 1213729..1214232 1 NC_007908.1 hypothetical protein 1214232 3963436 Rfer_1130 Rhodoferax ferrireducens T118 hypothetical protein YP_522402.1 1213729 D 338969 CDS YP_522403.1 89899932 3963437 complement(1214446..1216104) 1 NC_007908.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1216104 groEL 3963437 groEL Rhodoferax ferrireducens T118 chaperonin GroEL YP_522403.1 1214446 R 338969 CDS YP_522404.1 89899933 3963438 complement(1216185..1216475) 1 NC_007908.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1216475 groES 3963438 groES Rhodoferax ferrireducens T118 co-chaperonin GroES YP_522404.1 1216185 R 338969 CDS YP_522405.1 89899934 3963439 1217396..1218400 1 NC_007908.1 sodium/calcium exchanger membrane protein 1218400 3963439 Rfer_1133 Rhodoferax ferrireducens T118 sodium/calcium exchanger membrane protein YP_522405.1 1217396 D 338969 CDS YP_522406.1 89899935 3963440 complement(1218697..1219947) 1 NC_007908.1 hypothetical protein 1219947 3963440 Rfer_1134 Rhodoferax ferrireducens T118 hypothetical protein YP_522406.1 1218697 R 338969 CDS YP_522407.1 89899936 3963441 complement(1220460..1221065) 1 NC_007908.1 two component LuxR family transcriptional regulator 1221065 3963441 Rfer_1135 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_522407.1 1220460 R 338969 CDS YP_522408.1 89899937 3963442 complement(1221058..1222683) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 1222683 3963442 Rfer_1136 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_522408.1 1221058 R 338969 CDS YP_522409.1 89899938 3963444 1223382..1224551 1 NC_007908.1 transposase, IS4 1224551 3963444 Rfer_1138 Rhodoferax ferrireducens T118 transposase, IS4 YP_522409.1 1223382 D 338969 CDS YP_522410.1 89899939 3963446 complement(1224894..1225358) 1 NC_007908.1 hypothetical protein 1225358 3963446 Rfer_1140 Rhodoferax ferrireducens T118 hypothetical protein YP_522410.1 1224894 R 338969 CDS YP_522411.1 89899940 3963448 1226243..1226494 1 NC_007908.1 hypothetical protein 1226494 3963448 Rfer_1142 Rhodoferax ferrireducens T118 hypothetical protein YP_522411.1 1226243 D 338969 CDS YP_522412.1 89899941 3963449 1226642..1227025 1 NC_007908.1 heavy metal transport/detoxification protein 1227025 3963449 Rfer_1143 Rhodoferax ferrireducens T118 heavy metal transport/detoxification protein YP_522412.1 1226642 D 338969 CDS YP_522413.1 89899942 3963450 1227119..1229674 1 NC_007908.1 heavy metal translocating P-type ATPase 1229674 3963450 Rfer_1144 Rhodoferax ferrireducens T118 heavy metal translocating P-type ATPase YP_522413.1 1227119 D 338969 CDS YP_522414.1 89899943 3963451 1229726..1231405 1 NC_007908.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1231405 3963451 Rfer_1145 Rhodoferax ferrireducens T118 phosphoglucomutase YP_522414.1 1229726 D 338969 CDS YP_522415.1 89899944 3963452 1231402..1232700 1 NC_007908.1 hypothetical protein 1232700 3963452 Rfer_1146 Rhodoferax ferrireducens T118 hypothetical protein YP_522415.1 1231402 D 338969 CDS YP_522416.1 89899945 3963454 complement(1233577..1234200) 1 NC_007908.1 hypothetical protein 1234200 3963454 Rfer_1148 Rhodoferax ferrireducens T118 hypothetical protein YP_522416.1 1233577 R 338969 CDS YP_522417.1 89899946 3963455 1234307..1235155 1 NC_007908.1 hypothetical protein 1235155 3963455 Rfer_1149 Rhodoferax ferrireducens T118 hypothetical protein YP_522417.1 1234307 D 338969 CDS YP_522418.1 89899947 3963456 complement(1235513..1235803) 1 NC_007908.1 hypothetical protein 1235803 3963456 Rfer_1150 Rhodoferax ferrireducens T118 hypothetical protein YP_522418.1 1235513 R 338969 CDS YP_522419.1 89899948 3963457 complement(1236130..1237380) 1 NC_007908.1 hypothetical protein 1237380 3963457 Rfer_1151 Rhodoferax ferrireducens T118 hypothetical protein YP_522419.1 1236130 R 338969 CDS YP_522420.1 89899949 3963459 complement(1238237..1238782) 1 NC_007908.1 OmpA/MotB 1238782 3963459 Rfer_1153 Rhodoferax ferrireducens T118 OmpA/MotB YP_522420.1 1238237 R 338969 CDS YP_522421.1 89899950 3963460 complement(1239005..1239493) 1 NC_007908.1 MarR family transcriptional regulator 1239493 3963460 Rfer_1154 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_522421.1 1239005 R 338969 CDS YP_522422.1 89899951 3963461 complement(1240547..1241869) 1 NC_007908.1 voltage gated Cl- channel protein 1241869 3963461 Rfer_1155 Rhodoferax ferrireducens T118 voltage gated Cl- channel protein YP_522422.1 1240547 R 338969 CDS YP_522423.1 89899952 3963462 1242123..1242971 1 NC_007908.1 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 1242971 3963462 Rfer_1156 Rhodoferax ferrireducens T118 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 YP_522423.1 1242123 D 338969 CDS YP_522424.1 89899953 3963463 1243146..1243838 1 NC_007908.1 MotA/TolQ/ExbB proton channel 1243838 3963463 Rfer_1157 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_522424.1 1243146 D 338969 CDS YP_522425.1 89899954 3963464 1243852..1244271 1 NC_007908.1 biopolymer transport protein ExbD/TolR 1244271 3963464 Rfer_1158 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_522425.1 1243852 D 338969 CDS YP_522426.1 89899955 3963465 1244281..1245294 1 NC_007908.1 TonB-like protein 1245294 3963465 Rfer_1159 Rhodoferax ferrireducens T118 TonB-like protein YP_522426.1 1244281 D 338969 CDS YP_522427.1 89899956 3963466 1245718..1246029 1 NC_007908.1 hypothetical protein 1246029 3963466 Rfer_1160 Rhodoferax ferrireducens T118 hypothetical protein YP_522427.1 1245718 D 338969 CDS YP_522428.1 89899957 3963467 1246033..1247589 1 NC_007908.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1247589 3963467 Rfer_1161 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit beta YP_522428.1 1246033 D 338969 CDS YP_522429.1 89899958 3963468 1247579..1247968 1 NC_007908.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1247968 3963468 Rfer_1162 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit epsilon YP_522429.1 1247579 D 338969 CDS YP_522430.1 89899959 3963469 1247961..1248296 1 NC_007908.1 F0F1-ATPase 1248296 3963469 Rfer_1163 Rhodoferax ferrireducens T118 F0F1-ATPase YP_522430.1 1247961 D 338969 CDS YP_522431.1 89899960 3963470 1248289..1248603 1 NC_007908.1 hypothetical protein 1248603 3963470 Rfer_1164 Rhodoferax ferrireducens T118 hypothetical protein YP_522431.1 1248289 D 338969 CDS YP_522432.1 89899961 3963549 1248593..1249288 1 NC_007908.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1249288 3963549 Rfer_1165 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit A YP_522432.1 1248593 D 338969 CDS YP_522433.1 89899962 3963550 1249320..1249601 1 NC_007908.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1249601 3963550 Rfer_1166 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit C YP_522433.1 1249320 D 338969 CDS YP_522434.1 89899963 3963551 1249605..1250585 1 NC_007908.1 H+-transporting two-sector ATPase, B/B' subunit 1250585 3963551 Rfer_1167 Rhodoferax ferrireducens T118 H+-transporting two-sector ATPase, B/B' subunit YP_522434.1 1249605 D 338969 CDS YP_522435.1 89899964 3963552 1250588..1252192 1 NC_007908.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1252192 3963552 Rfer_1168 Rhodoferax ferrireducens T118 F0F1 ATP synthase subunit alpha YP_522435.1 1250588 D 338969 CDS YP_522436.1 89899965 3963553 1252189..1253070 1 NC_007908.1 H+-transporting two-sector ATPase subunit gamma 1253070 3963553 Rfer_1169 Rhodoferax ferrireducens T118 H+-transporting two-sector ATPase subunit gamma YP_522436.1 1252189 D 338969 CDS YP_522437.1 89899966 3963554 complement(1253824..1255347) 1 NC_007908.1 transposase IS66 1255347 3963554 Rfer_1170 Rhodoferax ferrireducens T118 transposase IS66 YP_522437.1 1253824 R 338969 CDS YP_522438.1 89899967 3963555 1255466..1256605 1 NC_007908.1 transposase IS116/IS110/IS902 1256605 3963555 Rfer_1171 Rhodoferax ferrireducens T118 transposase IS116/IS110/IS902 YP_522438.1 1255466 D 338969 CDS YP_522439.1 89899968 3963556 complement(1257034..1257369) 1 NC_007908.1 IS66 Orf2 like 1257369 3963556 Rfer_1172 Rhodoferax ferrireducens T118 IS66 Orf2 like YP_522439.1 1257034 R 338969 CDS YP_522440.1 89899969 3963557 complement(1257378..1257782) 1 NC_007908.1 transposase IS3/IS911 1257782 3963557 Rfer_1173 Rhodoferax ferrireducens T118 transposase IS3/IS911 YP_522440.1 1257378 R 338969 CDS YP_522441.1 89899970 3963558 1259480..1260403 1 NC_007908.1 hypothetical protein 1260403 3963558 Rfer_1174 Rhodoferax ferrireducens T118 hypothetical protein YP_522441.1 1259480 D 338969 CDS YP_522442.1 89899971 3963559 1260390..1262636 1 NC_007908.1 hypothetical protein 1262636 3963559 Rfer_1175 Rhodoferax ferrireducens T118 hypothetical protein YP_522442.1 1260390 D 338969 CDS YP_522443.1 89899972 3963560 1262633..1264090 1 NC_007908.1 hypothetical protein 1264090 3963560 Rfer_1176 Rhodoferax ferrireducens T118 hypothetical protein YP_522443.1 1262633 D 338969 CDS YP_522444.1 89899973 3963561 1264087..1265172 1 NC_007908.1 hypothetical protein 1265172 3963561 Rfer_1177 Rhodoferax ferrireducens T118 hypothetical protein YP_522444.1 1264087 D 338969 CDS YP_522445.1 89899974 3963562 1265548..1266147 1 NC_007908.1 hypothetical protein 1266147 3963562 Rfer_1178 Rhodoferax ferrireducens T118 hypothetical protein YP_522445.1 1265548 D 338969 CDS YP_522446.1 89899975 3963563 1266499..1266930 1 NC_007908.1 hypothetical protein 1266930 3963563 Rfer_1179 Rhodoferax ferrireducens T118 hypothetical protein YP_522446.1 1266499 D 338969 CDS YP_522447.1 89899976 3963564 complement(1267345..1267725) 1 NC_007908.1 hypothetical protein 1267725 3963564 Rfer_1180 Rhodoferax ferrireducens T118 hypothetical protein YP_522447.1 1267345 R 338969 CDS YP_522448.1 89899977 3963565 1267761..1268018 1 NC_007908.1 hypothetical protein 1268018 3963565 Rfer_1181 Rhodoferax ferrireducens T118 hypothetical protein YP_522448.1 1267761 D 338969 CDS YP_522449.1 89899978 3963566 1268494..1268895 1 NC_007908.1 hypothetical protein 1268895 3963566 Rfer_1182 Rhodoferax ferrireducens T118 hypothetical protein YP_522449.1 1268494 D 338969 CDS YP_522450.1 89899979 3963567 1268985..1269389 1 NC_007908.1 hypothetical protein 1269389 3963567 Rfer_1183 Rhodoferax ferrireducens T118 hypothetical protein YP_522450.1 1268985 D 338969 CDS YP_522451.1 89899980 3963568 1269396..1270343 1 NC_007908.1 hypothetical protein 1270343 3963568 Rfer_1184 Rhodoferax ferrireducens T118 hypothetical protein YP_522451.1 1269396 D 338969 CDS YP_522452.1 89899981 3963510 1270380..1271102 1 NC_007908.1 hypothetical protein 1271102 3963510 Rfer_1185 Rhodoferax ferrireducens T118 hypothetical protein YP_522452.1 1270380 D 338969 CDS YP_522453.1 89899982 3963511 1271080..1272399 1 NC_007908.1 hypothetical protein 1272399 3963511 Rfer_1186 Rhodoferax ferrireducens T118 hypothetical protein YP_522453.1 1271080 D 338969 CDS YP_522454.1 89899983 3963512 1272568..1272981 1 NC_007908.1 hypothetical protein 1272981 3963512 Rfer_1187 Rhodoferax ferrireducens T118 hypothetical protein YP_522454.1 1272568 D 338969 CDS YP_522455.1 89899984 3963513 1273688..1274374 1 NC_007908.1 hypothetical protein 1274374 3963513 Rfer_1188 Rhodoferax ferrireducens T118 hypothetical protein YP_522455.1 1273688 D 338969 CDS YP_522456.1 89899985 3963514 1274502..1275542 1 NC_007908.1 hypothetical protein 1275542 3963514 Rfer_1189 Rhodoferax ferrireducens T118 hypothetical protein YP_522456.1 1274502 D 338969 CDS YP_522457.1 89899986 3963515 1275731..1276891 1 NC_007908.1 integrase 1276891 3963515 Rfer_1190 Rhodoferax ferrireducens T118 integrase YP_522457.1 1275731 D 338969 CDS YP_522458.1 89899987 3963516 1277199..1278314 1 NC_007908.1 HNH endonuclease 1278314 3963516 Rfer_1191 Rhodoferax ferrireducens T118 HNH endonuclease YP_522458.1 1277199 D 338969 CDS YP_522459.1 89899988 3963518 complement(1279282..1279608) 1 NC_007908.1 putative thioredoxin 1279608 3963518 Rfer_1193 Rhodoferax ferrireducens T118 putative thioredoxin YP_522459.1 1279282 R 338969 CDS YP_522460.1 89899989 3963519 complement(1279764..1280036) 1 NC_007908.1 hypothetical protein 1280036 3963519 Rfer_1194 Rhodoferax ferrireducens T118 hypothetical protein YP_522460.1 1279764 R 338969 CDS YP_522461.1 89899990 3963520 complement(1280530..1281726) 1 NC_007908.1 putative transposase 1281726 3963520 Rfer_1195 Rhodoferax ferrireducens T118 putative transposase YP_522461.1 1280530 R 338969 CDS YP_522462.1 89899991 3963521 complement(1281736..1282611) 1 NC_007908.1 phage integrase 1282611 3963521 Rfer_1196 Rhodoferax ferrireducens T118 phage integrase YP_522462.1 1281736 R 338969 CDS YP_522463.1 89899992 3963522 complement(1283387..1283701) 1 NC_007908.1 hypothetical protein 1283701 3963522 Rfer_1197 Rhodoferax ferrireducens T118 hypothetical protein YP_522463.1 1283387 R 338969 CDS YP_522464.1 89899993 3963523 complement(1283770..1285062) 1 NC_007908.1 hypothetical protein 1285062 3963523 Rfer_1198 Rhodoferax ferrireducens T118 hypothetical protein YP_522464.1 1283770 R 338969 CDS YP_522465.1 89899994 3963524 complement(1285073..1285540) 1 NC_007908.1 hypothetical protein 1285540 3963524 Rfer_1199 Rhodoferax ferrireducens T118 hypothetical protein YP_522465.1 1285073 R 338969 CDS YP_522466.1 89899995 3963525 complement(1285527..1285982) 1 NC_007908.1 hypothetical protein 1285982 3963525 Rfer_1200 Rhodoferax ferrireducens T118 hypothetical protein YP_522466.1 1285527 R 338969 CDS YP_522467.1 89899996 3963526 complement(1285991..1286473) 1 NC_007908.1 hypothetical protein 1286473 3963526 Rfer_1201 Rhodoferax ferrireducens T118 hypothetical protein YP_522467.1 1285991 R 338969 CDS YP_522468.1 89899997 3963527 complement(1286596..1289934) 1 NC_007908.1 UvrD/REP helicase 1289934 3963527 Rfer_1202 Rhodoferax ferrireducens T118 UvrD/REP helicase YP_522468.1 1286596 R 338969 CDS YP_522469.1 89899998 3963528 complement(1289936..1290550) 1 NC_007908.1 hypothetical protein 1290550 3963528 Rfer_1203 Rhodoferax ferrireducens T118 hypothetical protein YP_522469.1 1289936 R 338969 CDS YP_522470.1 89899999 3963529 complement(1290547..1291614) 1 NC_007908.1 sigma-24 (FecI-like protein) 1291614 3963529 Rfer_1204 Rhodoferax ferrireducens T118 sigma-24 (FecI-like protein) YP_522470.1 1290547 R 338969 CDS YP_522471.1 89900000 3963530 1291959..1292285 1 NC_007908.1 hypothetical protein 1292285 3963530 Rfer_1205 Rhodoferax ferrireducens T118 hypothetical protein YP_522471.1 1291959 D 338969 CDS YP_522472.1 89900001 3963531 1292342..1293568 1 NC_007908.1 major facilitator transporter 1293568 3963531 Rfer_1206 Rhodoferax ferrireducens T118 major facilitator transporter YP_522472.1 1292342 D 338969 CDS YP_522473.1 89900002 3963532 complement(1293947..1294444) 1 NC_007908.1 aspartyl protease-like protein 1294444 3963532 Rfer_1207 Rhodoferax ferrireducens T118 aspartyl protease-like protein YP_522473.1 1293947 R 338969 CDS YP_522474.1 89900003 3963533 complement(1294783..1295841) 1 NC_007908.1 HNH nuclease 1295841 3963533 Rfer_1208 Rhodoferax ferrireducens T118 HNH nuclease YP_522474.1 1294783 R 338969 CDS YP_522475.1 89900004 3963534 complement(1295846..1296241) 1 NC_007908.1 histidine triad (HIT) protein 1296241 3963534 Rfer_1209 Rhodoferax ferrireducens T118 histidine triad (HIT) protein YP_522475.1 1295846 R 338969 CDS YP_522476.1 89900005 3963535 complement(1296238..1297425) 1 NC_007908.1 hypothetical protein 1297425 3963535 Rfer_1210 Rhodoferax ferrireducens T118 hypothetical protein YP_522476.1 1296238 R 338969 CDS YP_522477.1 89900006 3963536 1297512..1297880 1 NC_007908.1 hypothetical protein 1297880 3963536 Rfer_1211 Rhodoferax ferrireducens T118 hypothetical protein YP_522477.1 1297512 D 338969 CDS YP_522478.1 89900007 3963537 complement(1297901..1298947) 1 NC_007908.1 DNA/RNA non-specific endonuclease 1298947 3963537 Rfer_1212 Rhodoferax ferrireducens T118 DNA/RNA non-specific endonuclease YP_522478.1 1297901 R 338969 CDS YP_522479.1 89900008 3963539 1299645..1301132 1 NC_007908.1 hypothetical protein 1301132 3963539 Rfer_1214 Rhodoferax ferrireducens T118 hypothetical protein YP_522479.1 1299645 D 338969 CDS YP_522480.1 89900009 3963540 complement(1301452..1301976) 1 NC_007908.1 MarR family transcriptional regulator 1301976 3963540 Rfer_1215 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_522480.1 1301452 R 338969 CDS YP_522481.1 89900010 3963541 1302254..1303807 1 NC_007908.1 Acetyl-CoA hydrolase 1303807 3963541 Rfer_1216 Rhodoferax ferrireducens T118 Acetyl-CoA hydrolase YP_522481.1 1302254 D 338969 CDS YP_522482.1 89900011 3963542 complement(1303888..1304496) 1 NC_007908.1 hypothetical protein 1304496 3963542 Rfer_1217 Rhodoferax ferrireducens T118 hypothetical protein YP_522482.1 1303888 R 338969 CDS YP_522483.1 89900012 3963543 1304636..1305904 1 NC_007908.1 natural resistance-associated macrophage protein 1305904 3963543 Rfer_1218 Rhodoferax ferrireducens T118 natural resistance-associated macrophage protein YP_522483.1 1304636 D 338969 CDS YP_522484.1 89900013 3963544 1305975..1306451 1 NC_007908.1 hypothetical protein 1306451 3963544 Rfer_1219 Rhodoferax ferrireducens T118 hypothetical protein YP_522484.1 1305975 D 338969 CDS YP_522485.1 89900014 3963545 1306461..1307699 1 NC_007908.1 Bcr/CflA subfamily drug resistance transporter 1307699 3963545 Rfer_1220 Rhodoferax ferrireducens T118 Bcr/CflA subfamily drug resistance transporter YP_522485.1 1306461 D 338969 CDS YP_522486.1 89900015 3963546 complement(1307718..1308647) 1 NC_007908.1 LysR family transcriptional regulator 1308647 3963546 Rfer_1221 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522486.1 1307718 R 338969 CDS YP_522487.1 89900016 3963547 complement(1308970..1309755) 1 NC_007908.1 hypothetical protein 1309755 3963547 Rfer_1222 Rhodoferax ferrireducens T118 hypothetical protein YP_522487.1 1308970 R 338969 CDS YP_522488.1 89900017 3963548 complement(1310209..1311108) 1 NC_007908.1 ABC-type transport system periplasmic component 1311108 3963548 Rfer_1223 Rhodoferax ferrireducens T118 ABC-type transport system periplasmic component YP_522488.1 1310209 R 338969 CDS YP_522489.1 89900018 3961214 complement(1311201..1312001) 1 NC_007908.1 ABC-type transport system permease 1312001 3961214 Rfer_1224 Rhodoferax ferrireducens T118 ABC-type transport system permease YP_522489.1 1311201 R 338969 CDS YP_522490.1 89900019 3961215 1312114..1312863 1 NC_007908.1 hypothetical protein 1312863 3961215 Rfer_1225 Rhodoferax ferrireducens T118 hypothetical protein YP_522490.1 1312114 D 338969 CDS YP_522491.1 89900020 3961216 1312847..1314142 1 NC_007908.1 hypothetical protein 1314142 3961216 Rfer_1226 Rhodoferax ferrireducens T118 hypothetical protein YP_522491.1 1312847 D 338969 CDS YP_522492.1 89900021 3961217 1314126..1317380 1 NC_007908.1 DNA polymerase III subunit alpha 1317380 3961217 Rfer_1227 Rhodoferax ferrireducens T118 DNA polymerase III subunit alpha YP_522492.1 1314126 D 338969 CDS YP_522493.1 89900022 3961218 complement(1317485..1319059) 1 NC_007908.1 hypothetical protein 1319059 3961218 Rfer_1228 Rhodoferax ferrireducens T118 hypothetical protein YP_522493.1 1317485 R 338969 CDS YP_522494.1 89900023 3961219 1319612..1320520 1 NC_007908.1 peptidase C14, caspase catalytic subunit p20 1320520 3961219 Rfer_1229 Rhodoferax ferrireducens T118 peptidase C14, caspase catalytic subunit p20 YP_522494.1 1319612 D 338969 CDS YP_522495.1 89900024 3961220 1320533..1326028 1 NC_007908.1 hypothetical protein 1326028 3961220 Rfer_1230 Rhodoferax ferrireducens T118 hypothetical protein YP_522495.1 1320533 D 338969 CDS YP_522496.1 89900025 3961221 1326025..1327737 1 NC_007908.1 hypothetical protein 1327737 3961221 Rfer_1231 Rhodoferax ferrireducens T118 hypothetical protein YP_522496.1 1326025 D 338969 CDS YP_522497.1 89900026 3961222 1327780..1328829 1 NC_007908.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1328829 3961222 Rfer_1232 Rhodoferax ferrireducens T118 ribonuclease Z YP_522497.1 1327780 D 338969 CDS YP_522498.1 89900027 3961223 complement(1328832..1329134) 1 NC_007908.1 hypothetical protein 1329134 3961223 Rfer_1233 Rhodoferax ferrireducens T118 hypothetical protein YP_522498.1 1328832 R 338969 CDS YP_522499.1 89900028 3961224 1329261..1330427 1 NC_007908.1 lipopolysaccharide biosynthesis 1330427 3961224 Rfer_1234 Rhodoferax ferrireducens T118 lipopolysaccharide biosynthesis YP_522499.1 1329261 D 338969 CDS YP_522500.1 89900029 3961225 1330447..1331409 1 NC_007908.1 NAD-dependent epimerase/dehydratase 1331409 3961225 Rfer_1235 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_522500.1 1330447 D 338969 CDS YP_522501.1 89900030 3961226 1331544..1331948 1 NC_007908.1 hypothetical protein 1331948 3961226 Rfer_1236 Rhodoferax ferrireducens T118 hypothetical protein YP_522501.1 1331544 D 338969 CDS YP_522502.1 89900031 3961227 1331945..1333048 1 NC_007908.1 GDP-mannose 4,6-dehydratase 1333048 3961227 Rfer_1237 Rhodoferax ferrireducens T118 GDP-mannose 4,6-dehydratase YP_522502.1 1331945 D 338969 CDS YP_522503.1 89900032 3961228 1333110..1334048 1 NC_007908.1 WxcM-like protein 1334048 3961228 Rfer_1238 Rhodoferax ferrireducens T118 WxcM-like protein YP_522503.1 1333110 D 338969 CDS YP_522504.1 89900033 3961229 1334045..1335151 1 NC_007908.1 DegT/DnrJ/EryC1/StrS aminotransferase 1335151 3961229 Rfer_1239 Rhodoferax ferrireducens T118 DegT/DnrJ/EryC1/StrS aminotransferase YP_522504.1 1334045 D 338969 CDS YP_522505.1 89900034 3961230 1335167..1336648 1 NC_007908.1 polysaccharide biosynthesis protein 1336648 3961230 Rfer_1240 Rhodoferax ferrireducens T118 polysaccharide biosynthesis protein YP_522505.1 1335167 D 338969 CDS YP_522506.1 89900035 3961231 1336671..1337450 1 NC_007908.1 2-dehydro-3-deoxyglucarate aldolase 1337450 3961231 Rfer_1241 Rhodoferax ferrireducens T118 2-dehydro-3-deoxyglucarate aldolase YP_522506.1 1336671 D 338969 CDS YP_522507.1 89900036 3961232 1337447..1338217 1 NC_007908.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1338217 3961232 Rfer_1242 Rhodoferax ferrireducens T118 3-deoxy-manno-octulosonate cytidylyltransferase YP_522507.1 1337447 D 338969 CDS YP_522508.1 89900037 3962020 1338214..1339203 1 NC_007908.1 3-demethylubiquinone-9 3-methyltransferase 1339203 3962020 Rfer_1243 Rhodoferax ferrireducens T118 3-demethylubiquinone-9 3-methyltransferase YP_522508.1 1338214 D 338969 CDS YP_522509.1 89900038 3962021 1339211..1340260 1 NC_007908.1 oxidoreductase-like protein 1340260 3962021 Rfer_1244 Rhodoferax ferrireducens T118 oxidoreductase-like protein YP_522509.1 1339211 D 338969 CDS YP_522510.1 89900039 3962022 1340257..1340859 1 NC_007908.1 sugar isomerase (SIS) 1340859 3962022 Rfer_1245 Rhodoferax ferrireducens T118 sugar isomerase (SIS) YP_522510.1 1340257 D 338969 CDS YP_522511.1 89900040 3962023 1340840..1341586 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 1341586 3962023 Rfer_1246 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_522511.1 1340840 D 338969 CDS YP_522512.1 89900041 3962024 1341579..1342649 1 NC_007908.1 3-dehydroquinate synthase 1342649 3962024 Rfer_1247 Rhodoferax ferrireducens T118 3-dehydroquinate synthase YP_522512.1 1341579 D 338969 CDS YP_522513.1 89900042 3962025 1342646..1343578 1 NC_007908.1 D-isomer specific 2-hydroxyacid dehydrogenase 1343578 3962025 Rfer_1248 Rhodoferax ferrireducens T118 D-isomer specific 2-hydroxyacid dehydrogenase YP_522513.1 1342646 D 338969 CDS YP_522514.1 89900043 3962026 1343628..1344113 1 NC_007908.1 acetyltransferase 1344113 3962026 Rfer_1249 Rhodoferax ferrireducens T118 acetyltransferase YP_522514.1 1343628 D 338969 CDS YP_522515.1 89900044 3962027 1344138..1344911 1 NC_007908.1 nucleotidyl transferase 1344911 3962027 Rfer_1250 Rhodoferax ferrireducens T118 nucleotidyl transferase YP_522515.1 1344138 D 338969 CDS YP_522516.1 89900045 3962028 1344920..1346023 1 NC_007908.1 NAD-dependent epimerase/dehydratase 1346023 3962028 Rfer_1251 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_522516.1 1344920 D 338969 CDS YP_522517.1 89900046 3962029 1346020..1346445 1 NC_007908.1 hypothetical protein 1346445 3962029 Rfer_1252 Rhodoferax ferrireducens T118 hypothetical protein YP_522517.1 1346020 D 338969 CDS YP_522518.1 89900047 3962030 1346461..1347579 1 NC_007908.1 DegT/DnrJ/EryC1/StrS aminotransferase 1347579 3962030 Rfer_1253 Rhodoferax ferrireducens T118 DegT/DnrJ/EryC1/StrS aminotransferase YP_522518.1 1346461 D 338969 CDS YP_522519.1 89900048 3962031 1347654..1348676 1 NC_007908.1 hypothetical protein 1348676 3962031 Rfer_1254 Rhodoferax ferrireducens T118 hypothetical protein YP_522519.1 1347654 D 338969 CDS YP_522520.1 89900049 3962032 1348669..1349907 1 NC_007908.1 hypothetical protein 1349907 3962032 Rfer_1255 Rhodoferax ferrireducens T118 hypothetical protein YP_522520.1 1348669 D 338969 CDS YP_522521.1 89900050 3962033 1350323..1351198 1 NC_007908.1 glycosyl transferase family protein 1351198 3962033 Rfer_1256 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_522521.1 1350323 D 338969 CDS YP_522522.1 89900051 3962034 1351191..1352351 1 NC_007908.1 hypothetical protein 1352351 3962034 Rfer_1257 Rhodoferax ferrireducens T118 hypothetical protein YP_522522.1 1351191 D 338969 CDS YP_522523.1 89900052 3962035 1352760..1353263 1 NC_007908.1 transferase hexapeptide protein 1353263 3962035 Rfer_1258 Rhodoferax ferrireducens T118 transferase hexapeptide protein YP_522523.1 1352760 D 338969 CDS YP_522524.1 89900053 3962036 1353266..1354381 1 NC_007908.1 group 1 glycosyl transferase 1354381 3962036 Rfer_1259 Rhodoferax ferrireducens T118 group 1 glycosyl transferase YP_522524.1 1353266 D 338969 CDS YP_522525.1 89900054 3962037 1354551..1355699 1 NC_007908.1 NAD-dependent epimerase/dehydratase 1355699 3962037 Rfer_1260 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_522525.1 1354551 D 338969 CDS YP_522526.1 89900055 3962038 1355696..1356280 1 NC_007908.1 Serine acetyltransferase-like protein 1356280 3962038 Rfer_1261 Rhodoferax ferrireducens T118 Serine acetyltransferase-like protein YP_522526.1 1355696 D 338969 CDS YP_522527.1 89900056 3962039 1356282..1357331 1 NC_007908.1 hypothetical protein 1357331 3962039 Rfer_1262 Rhodoferax ferrireducens T118 hypothetical protein YP_522527.1 1356282 D 338969 CDS YP_522528.1 89900057 3960620 1357372..1357932 1 NC_007908.1 sugar transferase 1357932 3960620 Rfer_1263 Rhodoferax ferrireducens T118 sugar transferase YP_522528.1 1357372 D 338969 CDS YP_522529.1 89900058 3960621 complement(1358008..1359675) 1 NC_007908.1 O-antigen polymerase 1359675 3960621 Rfer_1264 Rhodoferax ferrireducens T118 O-antigen polymerase YP_522529.1 1358008 R 338969 CDS YP_522530.1 89900059 3960622 complement(1359764..1360246) 1 NC_007908.1 methylation 1360246 3960622 Rfer_1265 Rhodoferax ferrireducens T118 methylation YP_522530.1 1359764 R 338969 CDS YP_522531.1 89900060 3960623 1360527..1361015 1 NC_007908.1 Sel1-like protein 1361015 3960623 Rfer_1266 Rhodoferax ferrireducens T118 Sel1-like protein YP_522531.1 1360527 D 338969 CDS YP_522532.1 89900061 3960625 complement(1361219..1362202) 1 NC_007908.1 farnesyltranstransferase 1362202 3960625 Rfer_1267 Rhodoferax ferrireducens T118 farnesyltranstransferase YP_522532.1 1361219 R 338969 CDS YP_522533.1 89900062 3960626 1362267..1362662 1 NC_007908.1 50S ribosomal protein L21 1362662 3960626 Rfer_1268 Rhodoferax ferrireducens T118 50S ribosomal protein L21 YP_522533.1 1362267 D 338969 CDS YP_522534.1 89900063 3960627 1362674..1362931 1 NC_007908.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1362931 rpmA 3960627 rpmA Rhodoferax ferrireducens T118 50S ribosomal protein L27 YP_522534.1 1362674 D 338969 CDS YP_522535.1 89900064 3960628 1363055..1364122 1 NC_007908.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1364122 obgE 3960628 obgE Rhodoferax ferrireducens T118 GTPase ObgE YP_522535.1 1363055 D 338969 CDS YP_522536.1 89900065 3960629 1364185..1365321 1 NC_007908.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1365321 3960629 Rfer_1271 Rhodoferax ferrireducens T118 gamma-glutamyl kinase YP_522536.1 1364185 D 338969 CDS YP_522537.1 89900066 3960630 complement(1365357..1365848) 1 NC_007908.1 hypothetical protein 1365848 3960630 Rfer_1272 Rhodoferax ferrireducens T118 hypothetical protein YP_522537.1 1365357 R 338969 CDS YP_522538.1 89900067 3960631 complement(1365838..1366479) 1 NC_007908.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1366479 3960631 Rfer_1273 Rhodoferax ferrireducens T118 dinucleoside polyphosphate hydrolase YP_522538.1 1365838 R 338969 CDS YP_522539.2 162289255 3960632 1366572..1368314 1 NC_007908.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1368314 3960632 Rfer_1274 Rhodoferax ferrireducens T118 prolyl-tRNA synthetase YP_522539.2 1366572 D 338969 CDS YP_522540.1 89900069 3960633 1368389..1368946 1 NC_007908.1 lytic transglycosylase catalytic subunit 1368946 3960633 Rfer_1275 Rhodoferax ferrireducens T118 lytic transglycosylase catalytic subunit YP_522540.1 1368389 D 338969 CDS YP_522541.1 89900070 3960634 complement(1368952..1369278) 1 NC_007908.1 glutaredoxin-like protein 1369278 3960634 Rfer_1276 Rhodoferax ferrireducens T118 glutaredoxin-like protein YP_522541.1 1368952 R 338969 CDS YP_522542.1 89900071 3960635 1369535..1370011 1 NC_007908.1 putative fkbp-type peptidyl-prolyl cis-trans isomerase 1370011 3960635 Rfer_1277 Rhodoferax ferrireducens T118 putative fkbp-type peptidyl-prolyl cis-trans isomerase YP_522542.1 1369535 D 338969 CDS YP_522543.1 89900072 3960636 complement(1370040..1372073) 1 NC_007908.1 phage integrase 1372073 3960636 Rfer_1278 Rhodoferax ferrireducens T118 phage integrase YP_522543.1 1370040 R 338969 CDS YP_522544.1 89900073 3960637 complement(1372185..1373027) 1 NC_007908.1 HemK family modification methylase 1373027 3960637 Rfer_1279 Rhodoferax ferrireducens T118 HemK family modification methylase YP_522544.1 1372185 R 338969 CDS YP_522545.1 89900074 3962153 complement(1373108..1374208) 1 NC_007908.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1374208 prfA 3962153 prfA Rhodoferax ferrireducens T118 peptide chain release factor 1 YP_522545.1 1373108 R 338969 CDS YP_522546.1 89900075 3962154 complement(1374326..1375585) 1 NC_007908.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1375585 hemA 3962154 hemA Rhodoferax ferrireducens T118 glutamyl-tRNA reductase YP_522546.1 1374326 R 338969 CDS YP_522547.1 89900076 3962155 1375657..1375935 1 NC_007908.1 hypothetical protein 1375935 3962155 Rfer_1282 Rhodoferax ferrireducens T118 hypothetical protein YP_522547.1 1375657 D 338969 CDS YP_522548.1 89900077 3962156 complement(1375952..1376737) 1 NC_007908.1 glycerophosphodiester phosphodiesterase 1376737 3962156 Rfer_1283 Rhodoferax ferrireducens T118 glycerophosphodiester phosphodiesterase YP_522548.1 1375952 R 338969 CDS YP_522549.1 89900078 3962157 complement(1376749..1377786) 1 NC_007908.1 ABC transporter-like protein 1377786 3962157 Rfer_1284 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522549.1 1376749 R 338969 CDS YP_522550.1 89900079 3962158 complement(1377854..1378705) 1 NC_007908.1 twin-arginine translocation pathway signal protein 1378705 3962158 Rfer_1285 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_522550.1 1377854 R 338969 CDS YP_522551.1 89900080 3962159 complement(1378721..1379602) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1379602 3962159 Rfer_1286 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522551.1 1378721 R 338969 CDS YP_522552.1 89900081 3962160 complement(1379613..1380920) 1 NC_007908.1 extracellular solute-binding protein 1380920 3962160 Rfer_1287 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522552.1 1379613 R 338969 CDS YP_522553.1 89900082 3962161 1381153..1385076 1 NC_007908.1 FAD linked oxidase-like protein 1385076 3962161 Rfer_1288 Rhodoferax ferrireducens T118 FAD linked oxidase-like protein YP_522553.1 1381153 D 338969 CDS YP_522554.1 89900083 3962162 1385080..1385523 1 NC_007908.1 histidine triad (HIT) protein 1385523 3962162 Rfer_1289 Rhodoferax ferrireducens T118 histidine triad (HIT) protein YP_522554.1 1385080 D 338969 CDS YP_522555.1 89900084 3962163 1385567..1385980 1 NC_007908.1 hypothetical protein 1385980 3962163 Rfer_1290 Rhodoferax ferrireducens T118 hypothetical protein YP_522555.1 1385567 D 338969 CDS YP_522556.1 89900085 3962164 1386003..1386734 1 NC_007908.1 ubiquinone/menaquinone biosynthesis methyltransferase 1386734 3962164 Rfer_1291 Rhodoferax ferrireducens T118 ubiquinone/menaquinone biosynthesis methyltransferase YP_522556.1 1386003 D 338969 CDS YP_522557.1 89900086 3962165 1386759..1387715 1 NC_007908.1 import inner membrane translocase subunit Tim44 1387715 3962165 Rfer_1292 Rhodoferax ferrireducens T118 import inner membrane translocase subunit Tim44 YP_522557.1 1386759 D 338969 CDS YP_522558.1 89900087 3962166 1387798..1388352 1 NC_007908.1 hypothetical protein 1388352 3962166 Rfer_1293 Rhodoferax ferrireducens T118 hypothetical protein YP_522558.1 1387798 D 338969 CDS YP_522559.1 89900088 3962167 1388349..1389914 1 NC_007908.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 1389914 ubiB 3962167 ubiB Rhodoferax ferrireducens T118 putative ubiquinone biosynthesis protein UbiB YP_522559.1 1388349 D 338969 CDS YP_522560.1 89900089 3962168 1389984..1390325 1 NC_007908.1 hypothetical protein 1390325 3962168 Rfer_1295 Rhodoferax ferrireducens T118 hypothetical protein YP_522560.1 1389984 D 338969 CDS YP_522561.1 89900090 3962169 1390328..1391008 1 NC_007908.1 hypothetical protein 1391008 3962169 Rfer_1296 Rhodoferax ferrireducens T118 hypothetical protein YP_522561.1 1390328 D 338969 CDS YP_522562.1 89900091 3962170 1391057..1392892 1 NC_007908.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1392892 aspS 3962170 aspS Rhodoferax ferrireducens T118 aspartyl-tRNA synthetase YP_522562.1 1391057 D 338969 CDS YP_522563.1 89900092 3962171 1392923..1393435 1 NC_007908.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 1393435 ntpA 3962171 ntpA Rhodoferax ferrireducens T118 dATP pyrophosphohydrolase YP_522563.1 1392923 D 338969 CDS YP_522564.1 89900093 3962172 1393432..1394190 1 NC_007908.1 endonuclease/exonuclease/phosphatase 1394190 3962172 Rfer_1299 Rhodoferax ferrireducens T118 endonuclease/exonuclease/phosphatase YP_522564.1 1393432 D 338969 CDS YP_522565.1 89900094 3961524 1394233..1395468 1 NC_007908.1 phospholipase D/transphosphatidylase 1395468 3961524 Rfer_1300 Rhodoferax ferrireducens T118 phospholipase D/transphosphatidylase YP_522565.1 1394233 D 338969 CDS YP_522566.1 89900095 3961525 1395547..1396275 1 NC_007908.1 GTP cyclohydrolase I 1396275 3961525 Rfer_1301 Rhodoferax ferrireducens T118 GTP cyclohydrolase I YP_522566.1 1395547 D 338969 CDS YP_522567.1 89900096 3961526 1396278..1396700 1 NC_007908.1 hypothetical protein 1396700 3961526 Rfer_1302 Rhodoferax ferrireducens T118 hypothetical protein YP_522567.1 1396278 D 338969 CDS YP_522568.1 89900097 3961527 1396722..1397594 1 NC_007908.1 hypothetical protein 1397594 3961527 Rfer_1303 Rhodoferax ferrireducens T118 hypothetical protein YP_522568.1 1396722 D 338969 CDS YP_522569.1 89900098 3961528 complement(1397578..1398414) 1 NC_007908.1 cobyrinic acid a,c-diamide synthase 1398414 3961528 Rfer_1304 Rhodoferax ferrireducens T118 cobyrinic acid a,c-diamide synthase YP_522569.1 1397578 R 338969 CDS YP_522570.1 89900099 3961529 complement(1398417..1399187) 1 NC_007908.1 diguanylate cyclase 1399187 3961529 Rfer_1305 Rhodoferax ferrireducens T118 diguanylate cyclase YP_522570.1 1398417 R 338969 CDS YP_522571.1 89900100 3961530 1399362..1399889 1 NC_007908.1 nuclease 1399889 3961530 Rfer_1306 Rhodoferax ferrireducens T118 nuclease YP_522571.1 1399362 D 338969 CDS YP_522572.1 89900101 3961531 complement(1399900..1400652) 1 NC_007908.1 UBA/THIF-type NAD/FAD-binding protein 1400652 3961531 Rfer_1307 Rhodoferax ferrireducens T118 UBA/THIF-type NAD/FAD-binding protein YP_522572.1 1399900 R 338969 CDS YP_522573.1 89900102 3961532 complement(1400663..1402135) 1 NC_007908.1 carboxyl-terminal protease 1402135 3961532 Rfer_1308 Rhodoferax ferrireducens T118 carboxyl-terminal protease YP_522573.1 1400663 R 338969 CDS YP_522574.1 89900103 3961533 complement(1402325..1403068) 1 NC_007908.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1403068 gpmA 3961533 gpmA Rhodoferax ferrireducens T118 phosphoglyceromutase YP_522574.1 1402325 R 338969 CDS YP_522575.1 89900104 3961534 1403174..1403581 1 NC_007908.1 rhodanese-like protein 1403581 3961534 Rfer_1310 Rhodoferax ferrireducens T118 rhodanese-like protein YP_522575.1 1403174 D 338969 CDS YP_522576.1 89900105 3961535 1403613..1403882 1 NC_007908.1 glutaredoxin GrxC 1403882 3961535 Rfer_1311 Rhodoferax ferrireducens T118 glutaredoxin GrxC YP_522576.1 1403613 D 338969 CDS YP_522577.1 89900106 3961536 1404056..1404523 1 NC_007908.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 1404523 3961536 Rfer_1312 Rhodoferax ferrireducens T118 preprotein translocase subunit SecB YP_522577.1 1404056 D 338969 CDS YP_522578.1 89900107 3961537 1404575..1405615 1 NC_007908.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1405615 gpsA 3961537 gpsA Rhodoferax ferrireducens T118 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_522578.1 1404575 D 338969 CDS YP_522579.1 89900108 3961538 complement(1405656..1408232) 1 NC_007908.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1408232 3961538 Rfer_1314 Rhodoferax ferrireducens T118 cyanophycin synthetase YP_522579.1 1405656 R 338969 CDS YP_522580.1 89900109 3961539 complement(1408237..1410405) 1 NC_007908.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1410405 3961539 Rfer_1315 Rhodoferax ferrireducens T118 cyanophycin synthetase YP_522580.1 1408237 R 338969 CDS YP_522581.1 89900110 3961540 1410487..1412841 1 NC_007908.1 ABC transporter-like protein 1412841 3961540 Rfer_1316 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522581.1 1410487 D 338969 CDS YP_522582.1 89900111 3961541 1412838..1413326 1 NC_007908.1 hypothetical protein 1413326 3961541 Rfer_1317 Rhodoferax ferrireducens T118 hypothetical protein YP_522582.1 1412838 D 338969 CDS YP_522583.1 89900112 3961542 1413444..1414334 1 NC_007908.1 nicotinate-nucleotide pyrophosphorylase 1414334 3961542 Rfer_1318 Rhodoferax ferrireducens T118 nicotinate-nucleotide pyrophosphorylase YP_522583.1 1413444 D 338969 CDS YP_522584.1 89900113 3961350 1414377..1415513 1 NC_007908.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1415513 3961350 Rfer_1319 Rhodoferax ferrireducens T118 quinolinate synthetase YP_522584.1 1414377 D 338969 CDS YP_522585.1 89900114 3961351 1416691..1417722 1 NC_007908.1 hypothetical protein 1417722 3961351 Rfer_1320 Rhodoferax ferrireducens T118 hypothetical protein YP_522585.1 1416691 D 338969 CDS YP_522586.1 89900115 3961352 1417765..1418559 1 NC_007908.1 hypothetical protein 1418559 3961352 Rfer_1321 Rhodoferax ferrireducens T118 hypothetical protein YP_522586.1 1417765 D 338969 CDS YP_522587.1 89900116 3961353 complement(1418853..1419632) 1 NC_007908.1 hypothetical protein 1419632 3961353 Rfer_1322 Rhodoferax ferrireducens T118 hypothetical protein YP_522587.1 1418853 R 338969 CDS YP_522588.1 89900117 3961354 complement(1419629..1420624) 1 NC_007908.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 1420624 3961354 Rfer_1323 Rhodoferax ferrireducens T118 homoserine kinase YP_522588.1 1419629 R 338969 CDS YP_522589.1 89900118 3961355 complement(1420628..1420924) 1 NC_007908.1 hypothetical protein 1420924 3961355 Rfer_1324 Rhodoferax ferrireducens T118 hypothetical protein YP_522589.1 1420628 R 338969 CDS YP_522590.1 89900119 3961356 1420985..1423858 1 NC_007908.1 DNA polymerase I 1423858 3961356 Rfer_1325 Rhodoferax ferrireducens T118 DNA polymerase I YP_522590.1 1420985 D 338969 CDS YP_522591.1 89900120 3961357 1423867..1425483 1 NC_007908.1 alkaline phosphatase 1425483 3961357 Rfer_1326 Rhodoferax ferrireducens T118 alkaline phosphatase YP_522591.1 1423867 D 338969 CDS YP_522592.1 89900121 3961358 complement(1425493..1426770) 1 NC_007908.1 O-acetylhomoserine/O-acetylserine sulfhydrylase 1426770 3961358 Rfer_1327 Rhodoferax ferrireducens T118 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_522592.1 1425493 R 338969 CDS YP_522593.1 89900122 3961359 1426985..1428355 1 NC_007908.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 1428355 3961359 Rfer_1328 Rhodoferax ferrireducens T118 tryptophan synthase subunit beta YP_522593.1 1426985 D 338969 CDS YP_522594.1 89900123 3961360 complement(1428373..1429086) 1 NC_007908.1 phosphoserine phosphatase SerB 1429086 3961360 Rfer_1329 Rhodoferax ferrireducens T118 phosphoserine phosphatase SerB YP_522594.1 1428373 R 338969 CDS YP_522595.1 89900124 3961361 complement(1429155..1429955) 1 NC_007908.1 hypothetical protein 1429955 3961361 Rfer_1330 Rhodoferax ferrireducens T118 hypothetical protein YP_522595.1 1429155 R 338969 CDS YP_522596.1 89900125 3961362 complement(1430013..1433540) 1 NC_007908.1 transcription-repair coupling factor 1433540 3961362 Rfer_1331 Rhodoferax ferrireducens T118 transcription-repair coupling factor YP_522596.1 1430013 R 338969 CDS YP_522597.1 89900126 3961363 1433609..1434865 1 NC_007908.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1434865 3961363 Rfer_1332 Rhodoferax ferrireducens T118 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_522597.1 1433609 D 338969 CDS YP_522598.1 89900127 3961364 complement(1434906..1435814) 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 1435814 3961364 Rfer_1333 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_522598.1 1434906 R 338969 CDS YP_522599.1 89900128 3961365 1436129..1437373 1 NC_007908.1 2-nitropropane dioxygenase 1437373 3961365 Rfer_1334 Rhodoferax ferrireducens T118 2-nitropropane dioxygenase YP_522599.1 1436129 D 338969 CDS YP_522600.1 89900129 3961366 1437759..1439078 1 NC_007908.1 isocitrate lyase 1439078 3961366 Rfer_1335 Rhodoferax ferrireducens T118 isocitrate lyase YP_522600.1 1437759 D 338969 CDS YP_522601.1 89900130 3961367 1439257..1441266 1 NC_007908.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1441266 thrS 3961367 thrS Rhodoferax ferrireducens T118 threonyl-tRNA synthetase YP_522601.1 1439257 D 338969 CDS YP_522602.1 89900131 3961368 1441422..1441937 1 NC_007908.1 translation initiation factor IF-3 1441937 3961368 Rfer_1337 Rhodoferax ferrireducens T118 translation initiation factor IF-3 YP_522602.1 1441422 D 338969 CDS YP_522603.1 89900132 3961369 1442114..1442335 1 NC_007908.1 50S ribosomal protein L35 1442335 3961369 Rfer_1338 Rhodoferax ferrireducens T118 50S ribosomal protein L35 YP_522603.1 1442114 D 338969 CDS YP_522604.1 89900133 3960566 1442361..1442720 1 NC_007908.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1442720 rplT 3960566 rplT Rhodoferax ferrireducens T118 50S ribosomal protein L20 YP_522604.1 1442361 D 338969 CDS YP_522605.1 89900134 3960567 1442892..1443965 1 NC_007908.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1443965 pheS 3960567 pheS Rhodoferax ferrireducens T118 phenylalanyl-tRNA synthetase subunit alpha YP_522605.1 1442892 D 338969 CDS YP_522606.1 89900135 3960568 1443990..1446422 1 NC_007908.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1446422 pheT 3960568 pheT Rhodoferax ferrireducens T118 phenylalanyl-tRNA synthetase subunit beta YP_522606.1 1443990 D 338969 CDS YP_522607.1 89900136 3960569 1446487..1446795 1 NC_007908.1 integration host factor subunit alpha 1446795 3960569 Rfer_1342 Rhodoferax ferrireducens T118 integration host factor subunit alpha YP_522607.1 1446487 D 338969 CDS YP_522608.1 89900137 3960570 1446899..1447348 1 NC_007908.1 MerR family transcriptional regulator 1447348 3960570 Rfer_1343 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_522608.1 1446899 D 338969 CDS YP_522609.1 89900138 3960572 complement(1447519..1448349) 1 NC_007908.1 UDP-2,3-diacylglucosamine hydrolase 1448349 3960572 Rfer_1344 Rhodoferax ferrireducens T118 UDP-2,3-diacylglucosamine hydrolase YP_522609.1 1447519 R 338969 CDS YP_522610.1 89900139 3960573 complement(1448351..1448857) 1 NC_007908.1 peptidylprolyl isomerase 1448857 3960573 Rfer_1345 Rhodoferax ferrireducens T118 peptidylprolyl isomerase YP_522610.1 1448351 R 338969 CDS YP_522611.1 89900140 3960574 complement(1448861..1449460) 1 NC_007908.1 cyclophilin type peptidyl-prolyl cis-trans isomerase 1449460 3960574 Rfer_1346 Rhodoferax ferrireducens T118 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_522611.1 1448861 R 338969 CDS YP_522612.1 89900141 3960575 complement(1449457..1450701) 1 NC_007908.1 ErfK/YbiS/YcfS/YnhG 1450701 3960575 Rfer_1347 Rhodoferax ferrireducens T118 ErfK/YbiS/YcfS/YnhG YP_522612.1 1449457 R 338969 CDS YP_522613.1 89900142 3960576 complement(1450771..1451805) 1 NC_007908.1 hypothetical protein 1451805 3960576 Rfer_1348 Rhodoferax ferrireducens T118 hypothetical protein YP_522613.1 1450771 R 338969 CDS YP_522614.1 89900143 3960577 1451957..1453369 1 NC_007908.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1453369 cysS 3960577 cysS Rhodoferax ferrireducens T118 cysteinyl-tRNA synthetase YP_522614.1 1451957 D 338969 CDS YP_522615.1 89900144 3960578 1453415..1454065 1 NC_007908.1 HhH-GPD 1454065 3960578 Rfer_1350 Rhodoferax ferrireducens T118 HhH-GPD YP_522615.1 1453415 D 338969 CDS YP_522616.1 89900145 3960579 1454195..1455172 1 NC_007908.1 acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1455172 3960579 Rfer_1351 Rhodoferax ferrireducens T118 acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_522616.1 1454195 D 338969 CDS YP_522617.1 89900146 3960580 1455212..1456174 1 NC_007908.1 tRNA(Ile)-lysidine synthetase-like protein 1456174 3960580 Rfer_1352 Rhodoferax ferrireducens T118 tRNA(Ile)-lysidine synthetase-like protein YP_522617.1 1455212 D 338969 CDS YP_522618.1 89900147 3960581 1456187..1457455 1 NC_007908.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1457455 3960581 Rfer_1353 Rhodoferax ferrireducens T118 aspartate kinase YP_522618.1 1456187 D 338969 CDS YP_522619.1 89900148 3960508 1457772..1458986 1 NC_007908.1 phage integrase 1458986 3960508 Rfer_1354 Rhodoferax ferrireducens T118 phage integrase YP_522619.1 1457772 D 338969 CDS YP_522620.1 89900149 3960509 complement(1460696..1461541) 1 NC_007908.1 cobyrinic acid a,c-diamide synthase 1461541 3960509 Rfer_1355 Rhodoferax ferrireducens T118 cobyrinic acid a,c-diamide synthase YP_522620.1 1460696 R 338969 CDS YP_522621.1 89900150 3960510 complement(1461735..1462340) 1 NC_007908.1 hypothetical protein 1462340 3960510 Rfer_1356 Rhodoferax ferrireducens T118 hypothetical protein YP_522621.1 1461735 R 338969 CDS YP_522622.1 89900151 3960511 complement(1462479..1463276) 1 NC_007908.1 hypothetical protein 1463276 3960511 Rfer_1357 Rhodoferax ferrireducens T118 hypothetical protein YP_522622.1 1462479 R 338969 CDS YP_522623.1 89900152 3960512 complement(1463257..1463814) 1 NC_007908.1 hypothetical protein 1463814 3960512 Rfer_1358 Rhodoferax ferrireducens T118 hypothetical protein YP_522623.1 1463257 R 338969 CDS YP_522624.1 89900153 3960513 complement(1463811..1465439) 1 NC_007908.1 hypothetical protein 1465439 3960513 Rfer_1359 Rhodoferax ferrireducens T118 hypothetical protein YP_522624.1 1463811 R 338969 CDS YP_522625.1 89900154 3960514 complement(1465436..1466254) 1 NC_007908.1 hypothetical protein 1466254 3960514 Rfer_1360 Rhodoferax ferrireducens T118 hypothetical protein YP_522625.1 1465436 R 338969 CDS YP_522626.1 89900155 3960515 complement(1466352..1466609) 1 NC_007908.1 putative transcriptional regulator 1466609 3960515 Rfer_1361 Rhodoferax ferrireducens T118 putative transcriptional regulator YP_522626.1 1466352 R 338969 CDS YP_522627.1 89900156 3960516 complement(1466809..1467597) 1 NC_007908.1 hypothetical protein 1467597 3960516 Rfer_1362 Rhodoferax ferrireducens T118 hypothetical protein YP_522627.1 1466809 R 338969 CDS YP_522628.1 89900157 3960517 complement(1467594..1468850) 1 NC_007908.1 hypothetical protein 1468850 3960517 Rfer_1363 Rhodoferax ferrireducens T118 hypothetical protein YP_522628.1 1467594 R 338969 CDS YP_522629.1 89900158 3960518 1468965..1469162 1 NC_007908.1 hypothetical protein 1469162 3960518 Rfer_1364 Rhodoferax ferrireducens T118 hypothetical protein YP_522629.1 1468965 D 338969 CDS YP_522630.1 89900159 3960519 1469159..1471252 1 NC_007908.1 N-6 DNA methylase 1471252 3960519 Rfer_1365 Rhodoferax ferrireducens T118 N-6 DNA methylase YP_522630.1 1469159 D 338969 CDS YP_522631.1 89900160 3960520 1471267..1472535 1 NC_007908.1 putative type I site-specific restriction-modification system, S subunit 1472535 3960520 Rfer_1366 Rhodoferax ferrireducens T118 putative type I site-specific restriction-modification system, S subunit YP_522631.1 1471267 D 338969 CDS YP_522632.1 89900161 3960521 1472554..1476423 1 NC_007908.1 type III restriction enzyme, res subunit 1476423 3960521 Rfer_1367 Rhodoferax ferrireducens T118 type III restriction enzyme, res subunit YP_522632.1 1472554 D 338969 CDS YP_522633.1 89900162 3960522 1476420..1477040 1 NC_007908.1 hypothetical protein 1477040 3960522 Rfer_1368 Rhodoferax ferrireducens T118 hypothetical protein YP_522633.1 1476420 D 338969 CDS YP_522634.1 89900163 3960523 complement(1477446..1478756) 1 NC_007908.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1478756 3960523 Rfer_1369 Rhodoferax ferrireducens T118 glutamate-1-semialdehyde aminotransferase YP_522634.1 1477446 R 338969 CDS YP_522635.1 89900164 3960524 1479013..1479165 1 NC_007908.1 rubredoxin-type Fe(Cys)4 protein 1479165 3960524 Rfer_1370 Rhodoferax ferrireducens T118 rubredoxin-type Fe(Cys)4 protein YP_522635.1 1479013 D 338969 CDS YP_522636.1 89900165 3960525 1479227..1479625 1 NC_007908.1 response regulator receiver domain-containing protein 1479625 3960525 Rfer_1371 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_522636.1 1479227 D 338969 CDS YP_522637.1 89900166 3960526 1479625..1479990 1 NC_007908.1 response regulator receiver domain-containing protein 1479990 3960526 Rfer_1372 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_522637.1 1479625 D 338969 CDS YP_522638.1 89900167 3960527 1480006..1480536 1 NC_007908.1 CheW-like protein 1480536 3960527 Rfer_1373 Rhodoferax ferrireducens T118 CheW-like protein YP_522638.1 1480006 D 338969 CDS YP_522639.1 89900168 3960198 1480557..1482836 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 1482836 3960198 Rfer_1374 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_522639.1 1480557 D 338969 CDS YP_522640.1 89900169 3960199 1482881..1488547 1 NC_007908.1 CheA signal transduction histidine kinase 1488547 3960199 Rfer_1375 Rhodoferax ferrireducens T118 CheA signal transduction histidine kinase YP_522640.1 1482881 D 338969 CDS YP_522641.1 89900170 3960200 complement(1488606..1490084) 1 NC_007908.1 deoxyribodipyrimidine photolyase 1490084 3960200 Rfer_1376 Rhodoferax ferrireducens T118 deoxyribodipyrimidine photolyase YP_522641.1 1488606 R 338969 CDS YP_522642.1 89900171 3960201 1490157..1490705 1 NC_007908.1 hypothetical protein 1490705 3960201 Rfer_1377 Rhodoferax ferrireducens T118 hypothetical protein YP_522642.1 1490157 D 338969 CDS YP_522643.1 89900172 3960202 1490717..1491187 1 NC_007908.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1491187 3960202 Rfer_1378 Rhodoferax ferrireducens T118 Holliday junction resolvase-like protein YP_522643.1 1490717 D 338969 CDS YP_522644.1 89900173 3960203 1491187..1491684 1 NC_007908.1 phosphoribosyltransferase 1491684 3960203 Rfer_1379 Rhodoferax ferrireducens T118 phosphoribosyltransferase YP_522644.1 1491187 D 338969 CDS YP_522645.1 89900174 3960204 1491688..1492650 1 NC_007908.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1492650 pyrB 3960204 pyrB Rhodoferax ferrireducens T118 aspartate carbamoyltransferase catalytic subunit YP_522645.1 1491688 D 338969 CDS YP_522646.1 89900175 3960205 1492652..1493959 1 NC_007908.1 amidohydrolase 1493959 3960205 Rfer_1381 Rhodoferax ferrireducens T118 amidohydrolase YP_522646.1 1492652 D 338969 CDS YP_522647.1 89900176 3960206 1494086..1496140 1 NC_007908.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1496140 3960206 Rfer_1382 Rhodoferax ferrireducens T118 elongation factor G YP_522647.1 1494086 D 338969 CDS YP_522648.1 89900177 3960208 complement(1496463..1497593) 1 NC_007908.1 17 kDa surface antigen 1497593 3960208 Rfer_1384 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_522648.1 1496463 R 338969 CDS YP_522649.1 89900178 3960209 1498039..1499397 1 NC_007908.1 peptidase U32 1499397 3960209 Rfer_1385 Rhodoferax ferrireducens T118 peptidase U32 YP_522649.1 1498039 D 338969 CDS YP_522650.1 89900179 3960210 1499407..1499832 1 NC_007908.1 class I peptide chain release factor 1499832 3960210 Rfer_1386 Rhodoferax ferrireducens T118 class I peptide chain release factor YP_522650.1 1499407 D 338969 CDS YP_522651.1 89900180 3960211 1499958..1500548 1 NC_007908.1 NAD(P)H dehydrogenase (quinone) 1500548 3960211 Rfer_1387 Rhodoferax ferrireducens T118 NAD(P)H dehydrogenase (quinone) YP_522651.1 1499958 D 338969 CDS YP_522652.1 89900181 3960212 1500602..1501552 1 NC_007908.1 GTP-binding 1501552 3960212 Rfer_1388 Rhodoferax ferrireducens T118 GTP-binding YP_522652.1 1500602 D 338969 CDS YP_522653.1 89900182 3960213 complement(1501547..1501840) 1 NC_007908.1 ferredoxin 1501840 3960213 Rfer_1389 Rhodoferax ferrireducens T118 ferredoxin YP_522653.1 1501547 R 338969 CDS YP_522654.1 89900183 3960214 1501939..1502865 1 NC_007908.1 phosphoesterase, DHHA1 1502865 3960214 Rfer_1390 Rhodoferax ferrireducens T118 phosphoesterase, DHHA1 YP_522654.1 1501939 D 338969 CDS YP_522655.1 89900184 3960215 complement(1502903..1504282) 1 NC_007908.1 catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase 1504282 3960215 Rfer_1391 Rhodoferax ferrireducens T118 ribulose bisphosphate carboxylase YP_522655.1 1502903 R 338969 CDS YP_522656.1 89900185 3960216 complement(1504394..1505272) 1 NC_007908.1 phosphoribulokinase 1505272 3960216 Rfer_1392 Rhodoferax ferrireducens T118 phosphoribulokinase YP_522656.1 1504394 R 338969 CDS YP_522657.1 89900186 3962311 complement(1505354..1506448) 1 NC_007908.1 inositol phosphatase/fructose-1,6-bisphosphatase 1506448 3962311 Rfer_1393 Rhodoferax ferrireducens T118 inositol phosphatase/fructose-1,6-bisphosphatase YP_522657.1 1505354 R 338969 CDS YP_522658.1 89900187 3962312 1506753..1507670 1 NC_007908.1 LysR family transcriptional regulator 1507670 3962312 Rfer_1394 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522658.1 1506753 D 338969 CDS YP_522659.1 89900188 3962313 1508045..1508263 1 NC_007908.1 hypothetical protein 1508263 3962313 Rfer_1395 Rhodoferax ferrireducens T118 hypothetical protein YP_522659.1 1508045 D 338969 CDS YP_522660.1 89900189 3962314 complement(1508320..1508664) 1 NC_007908.1 hypothetical protein 1508664 3962314 Rfer_1396 Rhodoferax ferrireducens T118 hypothetical protein YP_522660.1 1508320 R 338969 CDS YP_522661.1 89900190 3962315 1508796..1510124 1 NC_007908.1 sodium/hydrogen exchanger 1510124 3962315 Rfer_1397 Rhodoferax ferrireducens T118 sodium/hydrogen exchanger YP_522661.1 1508796 D 338969 CDS YP_522662.1 89900191 3962316 1510206..1510853 1 NC_007908.1 hypothetical protein 1510853 3962316 Rfer_1398 Rhodoferax ferrireducens T118 hypothetical protein YP_522662.1 1510206 D 338969 CDS YP_522663.1 89900192 3962317 1510866..1511876 1 NC_007908.1 phosphate transporter 1511876 3962317 Rfer_1399 Rhodoferax ferrireducens T118 phosphate transporter YP_522663.1 1510866 D 338969 CDS YP_522664.1 89900193 3962318 complement(1511896..1512342) 1 NC_007908.1 hypothetical protein 1512342 3962318 Rfer_1400 Rhodoferax ferrireducens T118 hypothetical protein YP_522664.1 1511896 R 338969 CDS YP_522665.1 89900194 3962319 complement(1512352..1512876) 1 NC_007908.1 GCN5-like protein N-acetyltransferase 1512876 3962319 Rfer_1401 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_522665.1 1512352 R 338969 CDS YP_522666.1 89900195 3962320 1513010..1513261 1 NC_007908.1 30S ribosomal protein S16 1513261 3962320 Rfer_1402 Rhodoferax ferrireducens T118 30S ribosomal protein S16 YP_522666.1 1513010 D 338969 CDS YP_522667.1 89900196 3962321 1513272..1513835 1 NC_007908.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1513835 rimM 3962321 rimM Rhodoferax ferrireducens T118 16S rRNA-processing protein RimM YP_522667.1 1513272 D 338969 CDS YP_522668.1 89900197 3962322 1513846..1514592 1 NC_007908.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1514592 trmD 3962322 trmD Rhodoferax ferrireducens T118 tRNA (guanine-N(1)-)-methyltransferase YP_522668.1 1513846 D 338969 CDS YP_522669.1 89900198 3962323 1514761..1515141 1 NC_007908.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1515141 rplS 3962323 rplS Rhodoferax ferrireducens T118 50S ribosomal protein L19 YP_522669.1 1514761 D 338969 CDS YP_522670.1 89900199 3962324 1515224..1515925 1 NC_007908.1 NUDIX hydrolase 1515925 3962324 Rfer_1406 Rhodoferax ferrireducens T118 NUDIX hydrolase YP_522670.1 1515224 D 338969 CDS YP_522671.1 89900200 3962325 1515951..1516937 1 NC_007908.1 hypothetical protein 1516937 3962325 Rfer_1407 Rhodoferax ferrireducens T118 hypothetical protein YP_522671.1 1515951 D 338969 CDS YP_522672.1 89900201 3962326 1516984..1518096 1 NC_007908.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1518096 3962326 Rfer_1408 Rhodoferax ferrireducens T118 histidinol-phosphate aminotransferase YP_522672.1 1516984 D 338969 CDS YP_522673.1 89900202 3962327 complement(1518073..1518993) 1 NC_007908.1 GTPase EngC 1518993 3962327 Rfer_1409 Rhodoferax ferrireducens T118 GTPase EngC YP_522673.1 1518073 R 338969 CDS YP_522674.1 89900203 3962328 complement(1519019..1519354) 1 NC_007908.1 transcriptional coactivator/pterin dehydratase 1519354 3962328 Rfer_1410 Rhodoferax ferrireducens T118 transcriptional coactivator/pterin dehydratase YP_522674.1 1519019 R 338969 CDS YP_522675.1 89900204 3962329 complement(1519376..1520653) 1 NC_007908.1 Ste24 endopeptidase 1520653 3962329 Rfer_1411 Rhodoferax ferrireducens T118 Ste24 endopeptidase YP_522675.1 1519376 R 338969 CDS YP_522676.1 89900205 3962330 1520769..1521278 1 NC_007908.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1521278 3962330 Rfer_1412 Rhodoferax ferrireducens T118 oligoribonuclease YP_522676.1 1520769 D 338969 CDS YP_522677.1 89900206 3963186 1521515..1523386 1 NC_007908.1 DEAD/DEAH box helicase-like protein 1523386 3963186 Rfer_1413 Rhodoferax ferrireducens T118 DEAD/DEAH box helicase-like protein YP_522677.1 1521515 D 338969 CDS YP_522678.1 89900207 3963187 complement(1523638..1524051) 1 NC_007908.1 hypothetical protein 1524051 3963187 Rfer_1414 Rhodoferax ferrireducens T118 hypothetical protein YP_522678.1 1523638 R 338969 CDS YP_522679.1 89900208 3963188 complement(1524064..1524309) 1 NC_007908.1 hypothetical protein 1524309 3963188 Rfer_1415 Rhodoferax ferrireducens T118 hypothetical protein YP_522679.1 1524064 R 338969 CDS YP_522680.1 89900209 3963190 1524848..1525150 1 NC_007908.1 hypothetical protein 1525150 3963190 Rfer_1416 Rhodoferax ferrireducens T118 hypothetical protein YP_522680.1 1524848 D 338969 CDS YP_522681.1 89900210 3963191 1525530..1525907 1 NC_007908.1 hypothetical protein 1525907 3963191 Rfer_1417 Rhodoferax ferrireducens T118 hypothetical protein YP_522681.1 1525530 D 338969 CDS YP_522682.1 89900211 3963192 complement(1526052..1526417) 1 NC_007908.1 hypothetical protein 1526417 3963192 Rfer_1418 Rhodoferax ferrireducens T118 hypothetical protein YP_522682.1 1526052 R 338969 CDS YP_522683.1 89900212 3963193 1526600..1526818 1 NC_007908.1 SlyX 1526818 3963193 Rfer_1419 Rhodoferax ferrireducens T118 SlyX YP_522683.1 1526600 D 338969 CDS YP_522684.1 89900213 3963194 complement(1526812..1528497) 1 NC_007908.1 response regulator receiver domain-containing protein 1528497 3963194 Rfer_1420 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_522684.1 1526812 R 338969 CDS YP_522685.1 89900214 3963195 complement(1528654..1529265) 1 NC_007908.1 thiopurine S-methyltransferase 1529265 3963195 Rfer_1421 Rhodoferax ferrireducens T118 thiopurine S-methyltransferase YP_522685.1 1528654 R 338969 CDS YP_522686.1 89900215 3963196 1529404..1530882 1 NC_007908.1 exoribonuclease II 1530882 3963196 Rfer_1422 Rhodoferax ferrireducens T118 exoribonuclease II YP_522686.1 1529404 D 338969 CDS YP_522687.1 89900216 3963197 complement(1530912..1531367) 1 NC_007908.1 hypothetical protein 1531367 3963197 Rfer_1423 Rhodoferax ferrireducens T118 hypothetical protein YP_522687.1 1530912 R 338969 CDS YP_522688.1 89900217 3963198 complement(1531664..1533979) 1 NC_007908.1 phosphate acetyltransferase; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 1533979 3963198 Rfer_1424 Rhodoferax ferrireducens T118 malic enzyme YP_522688.1 1531664 R 338969 CDS YP_522689.1 89900218 3963199 complement(1534169..1534678) 1 NC_007908.1 hypothetical protein 1534678 3963199 Rfer_1425 Rhodoferax ferrireducens T118 hypothetical protein YP_522689.1 1534169 R 338969 CDS YP_522690.1 89900219 3963200 complement(1534797..1535705) 1 NC_007908.1 hypothetical protein 1535705 3963200 Rfer_1426 Rhodoferax ferrireducens T118 hypothetical protein YP_522690.1 1534797 R 338969 CDS YP_522691.1 89900220 3963201 complement(1535702..1537999) 1 NC_007908.1 diguanylate cyclase/phosphodiesterase 1537999 3963201 Rfer_1427 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_522691.1 1535702 R 338969 CDS YP_522692.1 89900221 3963202 complement(1537996..1539015) 1 NC_007908.1 putative transport protein 1539015 3963202 Rfer_1428 Rhodoferax ferrireducens T118 putative transport protein YP_522692.1 1537996 R 338969 CDS YP_522693.1 89900222 3963203 1539237..1540232 1 NC_007908.1 zinc-binding alcohol dehydrogenase 1540232 3963203 Rfer_1429 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_522693.1 1539237 D 338969 CDS YP_522694.1 89900223 3963127 complement(1540308..1541954) 1 NC_007908.1 Na/Pi cotransporter II-like protein 1541954 3963127 Rfer_1430 Rhodoferax ferrireducens T118 Na/Pi cotransporter II-like protein YP_522694.1 1540308 R 338969 CDS YP_522695.1 89900224 3963128 complement(1541980..1542489) 1 NC_007908.1 lipoprotein signal peptidase 1542489 3963128 Rfer_1431 Rhodoferax ferrireducens T118 lipoprotein signal peptidase YP_522695.1 1541980 R 338969 CDS YP_522696.1 89900225 3963129 complement(1542489..1545416) 1 NC_007908.1 isoleucyl-tRNA synthetase 1545416 3963129 Rfer_1432 Rhodoferax ferrireducens T118 isoleucyl-tRNA synthetase YP_522696.1 1542489 R 338969 CDS YP_522697.1 89900226 3963130 complement(1545391..1546359) 1 NC_007908.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1546359 3963130 Rfer_1433 Rhodoferax ferrireducens T118 bifunctional riboflavin kinase/FMN adenylyltransferase YP_522697.1 1545391 R 338969 CDS YP_522698.1 89900227 3963131 1546525..1547082 1 NC_007908.1 HNH endonuclease 1547082 3963131 Rfer_1434 Rhodoferax ferrireducens T118 HNH endonuclease YP_522698.1 1546525 D 338969 CDS YP_522699.1 89900228 3963132 1547258..1549573 1 NC_007908.1 hypothetical protein 1549573 3963132 Rfer_1435 Rhodoferax ferrireducens T118 hypothetical protein YP_522699.1 1547258 D 338969 CDS YP_522700.1 89900229 3963133 1549682..1550578 1 NC_007908.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1550578 3963133 Rfer_1436 Rhodoferax ferrireducens T118 DNA ligase YP_522700.1 1549682 D 338969 CDS YP_522701.1 89900230 3963134 complement(1550737..1550946) 1 NC_007908.1 hypothetical protein 1550946 3963134 Rfer_1437 Rhodoferax ferrireducens T118 hypothetical protein YP_522701.1 1550737 R 338969 CDS YP_522702.1 89900231 3963135 1551612..1551956 1 NC_007908.1 class I cytochrome c 1551956 3963135 Rfer_1438 Rhodoferax ferrireducens T118 class I cytochrome c YP_522702.1 1551612 D 338969 CDS YP_522703.1 89900232 3963136 1552216..1552371 1 NC_007908.1 hypothetical protein 1552371 3963136 Rfer_1439 Rhodoferax ferrireducens T118 hypothetical protein YP_522703.1 1552216 D 338969 CDS YP_522704.1 89900233 3963137 1553180..1554526 1 NC_007908.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1554526 3963137 Rfer_1440 Rhodoferax ferrireducens T118 C4-dicarboxylate transporter DctA YP_522704.1 1553180 D 338969 CDS YP_522705.1 89900234 3963138 1554718..1555206 1 NC_007908.1 pyridoxamine 5'-phosphate oxidase-like protein 1555206 3963138 Rfer_1441 Rhodoferax ferrireducens T118 pyridoxamine 5'-phosphate oxidase-like protein YP_522705.1 1554718 D 338969 CDS YP_522706.1 89900235 3963139 1555301..1555591 1 NC_007908.1 hypothetical protein 1555591 3963139 Rfer_1442 Rhodoferax ferrireducens T118 hypothetical protein YP_522706.1 1555301 D 338969 CDS YP_522707.1 89900236 3963140 1555703..1556482 1 NC_007908.1 hypothetical protein 1556482 3963140 Rfer_1443 Rhodoferax ferrireducens T118 hypothetical protein YP_522707.1 1555703 D 338969 CDS YP_522708.1 89900237 3963141 1556546..1557523 1 NC_007908.1 alpha/beta hydrolase fold-3 protein 1557523 3963141 Rfer_1444 Rhodoferax ferrireducens T118 alpha/beta hydrolase fold-3 protein YP_522708.1 1556546 D 338969 CDS YP_522709.1 89900238 3963142 complement(1557670..1558437) 1 NC_007908.1 hypothetical protein 1558437 3963142 Rfer_1445 Rhodoferax ferrireducens T118 hypothetical protein YP_522709.1 1557670 R 338969 CDS YP_522710.1 89900239 3963143 1558692..1559069 1 NC_007908.1 transport protein 1559069 3963143 Rfer_1446 Rhodoferax ferrireducens T118 transport protein YP_522710.1 1558692 D 338969 CDS YP_522711.1 89900240 3963144 complement(1559207..1559518) 1 NC_007908.1 hypothetical protein 1559518 3963144 Rfer_1447 Rhodoferax ferrireducens T118 hypothetical protein YP_522711.1 1559207 R 338969 CDS YP_522712.1 89900241 3963145 1559622..1560110 1 NC_007908.1 hypothetical protein 1560110 3963145 Rfer_1448 Rhodoferax ferrireducens T118 hypothetical protein YP_522712.1 1559622 D 338969 CDS YP_522713.1 89900242 3963146 complement(1560269..1560595) 1 NC_007908.1 hypothetical protein 1560595 3963146 Rfer_1449 Rhodoferax ferrireducens T118 hypothetical protein YP_522713.1 1560269 R 338969 CDS YP_522714.1 89900243 3962896 complement(1560683..1561423) 1 NC_007908.1 hypothetical protein 1561423 3962896 Rfer_1450 Rhodoferax ferrireducens T118 hypothetical protein YP_522714.1 1560683 R 338969 CDS YP_522715.1 89900244 3962897 complement(1561656..1562489) 1 NC_007908.1 hemerythrin-like protein, metal-binding 1562489 3962897 Rfer_1451 Rhodoferax ferrireducens T118 hemerythrin-like protein, metal-binding YP_522715.1 1561656 R 338969 CDS YP_522716.1 89900245 3962898 complement(1562703..1562900) 1 NC_007908.1 hypothetical protein 1562900 3962898 Rfer_1452 Rhodoferax ferrireducens T118 hypothetical protein YP_522716.1 1562703 R 338969 CDS YP_522717.1 89900246 3962899 1563062..1563340 1 NC_007908.1 acylphosphatase 1563340 3962899 Rfer_1453 Rhodoferax ferrireducens T118 acylphosphatase YP_522717.1 1563062 D 338969 CDS YP_522718.1 89900247 3962900 complement(1563640..1563861) 1 NC_007908.1 hypothetical protein 1563861 3962900 Rfer_1454 Rhodoferax ferrireducens T118 hypothetical protein YP_522718.1 1563640 R 338969 CDS YP_522719.1 89900248 3962901 complement(1563906..1564367) 1 NC_007908.1 class II cytochrome c 1564367 3962901 Rfer_1455 Rhodoferax ferrireducens T118 class II cytochrome c YP_522719.1 1563906 R 338969 CDS YP_522720.1 89900249 3962903 complement(1564803..1566713) 1 NC_007908.1 diguanylate cyclase 1566713 3962903 Rfer_1456 Rhodoferax ferrireducens T118 diguanylate cyclase YP_522720.1 1564803 R 338969 CDS YP_522721.1 89900250 3962905 1566918..1568861 1 NC_007908.1 DNA polymerase III subunits gamma and tau 1568861 3962905 Rfer_1457 Rhodoferax ferrireducens T118 DNA polymerase III subunits gamma and tau YP_522721.1 1566918 D 338969 CDS YP_522722.1 89900251 3962906 1568953..1569285 1 NC_007908.1 hypothetical protein 1569285 3962906 Rfer_1458 Rhodoferax ferrireducens T118 hypothetical protein YP_522722.1 1568953 D 338969 CDS YP_522723.1 89900252 3962907 1569292..1569882 1 NC_007908.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1569882 recR 3962907 recR Rhodoferax ferrireducens T118 recombination protein RecR YP_522723.1 1569292 D 338969 CDS YP_522724.1 89900253 3962908 1569983..1571029 1 NC_007908.1 twin-arginine translocation pathway signal protein 1571029 3962908 Rfer_1460 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_522724.1 1569983 D 338969 CDS YP_522725.1 89900254 3962909 complement(1571071..1572600) 1 NC_007908.1 lytic transglycosylase catalytic subunit 1572600 3962909 Rfer_1461 Rhodoferax ferrireducens T118 lytic transglycosylase catalytic subunit YP_522725.1 1571071 R 338969 CDS YP_522726.1 89900255 3962910 complement(1572600..1573322) 1 NC_007908.1 hydroxyacylglutathione hydrolase 1573322 3962910 Rfer_1462 Rhodoferax ferrireducens T118 hydroxyacylglutathione hydrolase YP_522726.1 1572600 R 338969 CDS YP_522727.1 89900256 3962911 1573453..1574154 1 NC_007908.1 hypothetical protein 1574154 3962911 Rfer_1463 Rhodoferax ferrireducens T118 hypothetical protein YP_522727.1 1573453 D 338969 CDS YP_522728.1 89900257 3962912 1574165..1574614 1 NC_007908.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1574614 rnhA 3962912 rnhA Rhodoferax ferrireducens T118 ribonuclease H YP_522728.1 1574165 D 338969 CDS YP_522729.1 89900258 3964289 complement(1574637..1576109) 1 NC_007908.1 anion transporter 1576109 3964289 Rfer_1465 Rhodoferax ferrireducens T118 anion transporter YP_522729.1 1574637 R 338969 CDS YP_522730.1 89900259 3964290 complement(1576313..1577674) 1 NC_007908.1 MoeA-like proteindomain-containing protein 1577674 3964290 Rfer_1466 Rhodoferax ferrireducens T118 MoeA-like proteindomain-containing protein YP_522730.1 1576313 R 338969 CDS YP_522731.1 89900260 3964291 complement(1577671..1578306) 1 NC_007908.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1578306 mobA 3964291 mobA Rhodoferax ferrireducens T118 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_522731.1 1577671 R 338969 CDS YP_522732.1 89900261 3964292 complement(1578308..1579474) 1 NC_007908.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1579474 moaA 3964292 moaA Rhodoferax ferrireducens T118 molybdenum cofactor biosynthesis protein A YP_522732.1 1578308 R 338969 CDS YP_522733.1 89900262 3964293 1579635..1580411 1 NC_007908.1 putative signal transduction protein 1580411 3964293 Rfer_1469 Rhodoferax ferrireducens T118 putative signal transduction protein YP_522733.1 1579635 D 338969 CDS YP_522734.1 89900263 3964294 complement(1580427..1580999) 1 NC_007908.1 hypothetical protein 1580999 3964294 Rfer_1470 Rhodoferax ferrireducens T118 hypothetical protein YP_522734.1 1580427 R 338969 CDS YP_522735.1 89900264 3964295 complement(1581082..1581708) 1 NC_007908.1 hypothetical protein 1581708 3964295 Rfer_1471 Rhodoferax ferrireducens T118 hypothetical protein YP_522735.1 1581082 R 338969 CDS YP_522736.1 89900265 3964296 complement(1581830..1583899) 1 NC_007908.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1583899 hppA 3964296 hppA Rhodoferax ferrireducens T118 membrane-bound proton-translocating pyrophosphatase YP_522736.1 1581830 R 338969 CDS YP_522737.1 89900266 3964297 1584138..1584674 1 NC_007908.1 inorganic diphosphatase 1584674 3964297 Rfer_1473 Rhodoferax ferrireducens T118 inorganic diphosphatase YP_522737.1 1584138 D 338969 CDS YP_522738.1 89900267 3964298 complement(1584780..1585577) 1 NC_007908.1 hypothetical protein 1585577 3964298 Rfer_1474 Rhodoferax ferrireducens T118 hypothetical protein YP_522738.1 1584780 R 338969 CDS YP_522739.1 89900268 3964299 complement(1585613..1587109) 1 NC_007908.1 hypothetical protein 1587109 3964299 Rfer_1475 Rhodoferax ferrireducens T118 hypothetical protein YP_522739.1 1585613 R 338969 CDS YP_522740.1 89900269 3964300 1587182..1587739 1 NC_007908.1 CheW protein 1587739 3964300 Rfer_1476 Rhodoferax ferrireducens T118 CheW protein YP_522740.1 1587182 D 338969 CDS YP_522741.1 89900270 3964302 complement(1588006..1589430) 1 NC_007908.1 FAD linked oxidase-like protein 1589430 3964302 Rfer_1477 Rhodoferax ferrireducens T118 FAD linked oxidase-like protein YP_522741.1 1588006 R 338969 CDS YP_522742.1 89900271 3964303 1589544..1590122 1 NC_007908.1 cobalamin adenosyltransferase 1590122 3964303 Rfer_1478 Rhodoferax ferrireducens T118 cobalamin adenosyltransferase YP_522742.1 1589544 D 338969 CDS YP_522743.1 89900272 3964304 1590184..1591293 1 NC_007908.1 6-phosphofructokinase 1591293 3964304 Rfer_1479 Rhodoferax ferrireducens T118 6-phosphofructokinase YP_522743.1 1590184 D 338969 CDS YP_522744.1 89900273 3964305 complement(1591450..1593063) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 1593063 3964305 Rfer_1480 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_522744.1 1591450 R 338969 CDS YP_522745.1 89900274 3964306 complement(1593203..1594486) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 1594486 3964306 Rfer_1481 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_522745.1 1593203 R 338969 CDS YP_522746.1 89900275 3964307 complement(1594483..1595157) 1 NC_007908.1 tripartite ATP-independent periplasmic transporter DctQ 1595157 3964307 Rfer_1482 Rhodoferax ferrireducens T118 tripartite ATP-independent periplasmic transporter DctQ YP_522746.1 1594483 R 338969 CDS YP_522747.1 89900276 3960924 complement(1595210..1596205) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctP 1596205 3960924 Rfer_1483 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctP YP_522747.1 1595210 R 338969 CDS YP_522748.1 89900277 3960925 complement(1596298..1597344) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctP 1597344 3960925 Rfer_1484 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctP YP_522748.1 1596298 R 338969 CDS YP_522749.1 89900278 3960926 1597428..1599458 1 NC_007908.1 multi-sensor signal transduction histidine kinase 1599458 3960926 Rfer_1485 Rhodoferax ferrireducens T118 multi-sensor signal transduction histidine kinase YP_522749.1 1597428 D 338969 CDS YP_522750.1 89900279 3960927 1599455..1600099 1 NC_007908.1 two component LuxR family transcriptional regulator 1600099 3960927 Rfer_1486 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_522750.1 1599455 D 338969 CDS YP_522751.1 89900280 3960928 1600244..1601548 1 NC_007908.1 putative transporter signal peptide protein 1601548 3960928 Rfer_1487 Rhodoferax ferrireducens T118 putative transporter signal peptide protein YP_522751.1 1600244 D 338969 CDS YP_522752.1 89900281 3960929 1601705..1601971 1 NC_007908.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1601971 rpsO 3960929 rpsO Rhodoferax ferrireducens T118 30S ribosomal protein S15 YP_522752.1 1601705 D 338969 CDS YP_522753.1 89900282 3960930 1602173..1604293 1 NC_007908.1 polynucleotide phosphorylase/polyadenylase 1604293 3960930 Rfer_1489 Rhodoferax ferrireducens T118 polynucleotide phosphorylase/polyadenylase YP_522753.1 1602173 D 338969 CDS YP_522754.1 89900283 3960931 1604359..1605360 1 NC_007908.1 zinc-binding alcohol dehydrogenase 1605360 3960931 Rfer_1490 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_522754.1 1604359 D 338969 CDS YP_522755.1 89900284 3960932 1605357..1606100 1 NC_007908.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1606100 tpiA 3960932 tpiA Rhodoferax ferrireducens T118 triosephosphate isomerase YP_522755.1 1605357 D 338969 CDS YP_522756.1 89900285 3960933 1606138..1606491 1 NC_007908.1 preprotein translocase subunit SecG 1606491 secG 3960933 secG Rhodoferax ferrireducens T118 preprotein translocase subunit SecG YP_522756.1 1606138 D 338969 CDS YP_522757.1 89900286 3960935 1606697..1607110 1 NC_007908.1 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1607110 3960935 Rfer_1493 Rhodoferax ferrireducens T118 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 YP_522757.1 1606697 D 338969 CDS YP_522758.1 89900287 3960936 1607115..1607594 1 NC_007908.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1607594 3960936 Rfer_1494 Rhodoferax ferrireducens T118 NADH dehydrogenase subunit B YP_522758.1 1607115 D 338969 CDS YP_522759.1 89900288 3960937 1607605..1608213 1 NC_007908.1 NADH (or F420H2) dehydrogenase subunit C 1608213 3960937 Rfer_1495 Rhodoferax ferrireducens T118 NADH (or F420H2) dehydrogenase subunit C YP_522759.1 1607605 D 338969 CDS YP_522760.1 89900289 3960938 1608221..1609474 1 NC_007908.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1609474 3960938 Rfer_1496 Rhodoferax ferrireducens T118 NADH dehydrogenase subunit D YP_522760.1 1608221 D 338969 CDS YP_522761.1 89900290 3960939 1609471..1609959 1 NC_007908.1 NADH-quinone oxidoreductase subunit E 1609959 3960939 Rfer_1497 Rhodoferax ferrireducens T118 NADH-quinone oxidoreductase subunit E YP_522761.1 1609471 D 338969 CDS YP_522762.1 89900291 3960940 1609959..1611335 1 NC_007908.1 NADH-quinone oxidoreductase subunit F 1611335 3960940 Rfer_1498 Rhodoferax ferrireducens T118 NADH-quinone oxidoreductase subunit F YP_522762.1 1609959 D 338969 CDS YP_522763.1 89900292 3960941 1611332..1613497 1 NC_007908.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1613497 3960941 Rfer_1499 Rhodoferax ferrireducens T118 NADH dehydrogenase subunit G YP_522763.1 1611332 D 338969 CDS YP_522764.1 89900293 3961115 1613494..1614576 1 NC_007908.1 respiratory-chain NADH dehydrogenase subunit 1 1614576 3961115 Rfer_1500 Rhodoferax ferrireducens T118 respiratory-chain NADH dehydrogenase subunit 1 YP_522764.1 1613494 D 338969 CDS YP_522765.1 89900294 3961116 1614589..1615122 1 NC_007908.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1615122 3961116 Rfer_1501 Rhodoferax ferrireducens T118 NADH dehydrogenase subunit I YP_522765.1 1614589 D 338969 CDS YP_522766.1 89900295 3961117 1615175..1615834 1 NC_007908.1 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1615834 3961117 Rfer_1502 Rhodoferax ferrireducens T118 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 YP_522766.1 1615175 D 338969 CDS YP_522767.1 89900296 3961118 1615831..1616139 1 NC_007908.1 NADH-ubiquinone oxidoreductase subunit 4L 1616139 3961118 Rfer_1503 Rhodoferax ferrireducens T118 NADH-ubiquinone oxidoreductase subunit 4L YP_522767.1 1615831 D 338969 CDS YP_522768.1 89900297 3961119 1616144..1618159 1 NC_007908.1 proton-translocating NADH-quinone oxidoreductase subunit L 1618159 3961119 Rfer_1504 Rhodoferax ferrireducens T118 proton-translocating NADH-quinone oxidoreductase subunit L YP_522768.1 1616144 D 338969 CDS YP_522769.1 89900298 3961120 1618173..1619648 1 NC_007908.1 proton-translocating NADH-quinone oxidoreductase subunit M 1619648 3961120 Rfer_1505 Rhodoferax ferrireducens T118 proton-translocating NADH-quinone oxidoreductase subunit M YP_522769.1 1618173 D 338969 CDS YP_522770.1 89900299 3961121 1619687..1621174 1 NC_007908.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1621174 3961121 Rfer_1506 Rhodoferax ferrireducens T118 NADH dehydrogenase subunit N YP_522770.1 1619687 D 338969 CDS YP_522771.1 89900300 3961122 1621299..1621904 1 NC_007908.1 NUDIX hydrolase 1621904 3961122 Rfer_1507 Rhodoferax ferrireducens T118 NUDIX hydrolase YP_522771.1 1621299 D 338969 CDS YP_522772.1 89900301 3961123 1621912..1622361 1 NC_007908.1 hypothetical protein 1622361 3961123 Rfer_1508 Rhodoferax ferrireducens T118 hypothetical protein YP_522772.1 1621912 D 338969 CDS YP_522773.1 89900302 3961124 1622497..1627269 1 NC_007908.1 NAD-glutamate dehydrogenase 1627269 3961124 Rfer_1509 Rhodoferax ferrireducens T118 NAD-glutamate dehydrogenase YP_522773.1 1622497 D 338969 CDS YP_522774.1 89900303 3961125 complement(1627288..1627557) 1 NC_007908.1 hypothetical protein 1627557 3961125 Rfer_1510 Rhodoferax ferrireducens T118 hypothetical protein YP_522774.1 1627288 R 338969 CDS YP_522775.1 89900304 3961126 complement(1627586..1627783) 1 NC_007908.1 hypothetical protein 1627783 3961126 Rfer_1511 Rhodoferax ferrireducens T118 hypothetical protein YP_522775.1 1627586 R 338969 CDS YP_522776.1 89900305 3961127 complement(1627836..1629671) 1 NC_007908.1 ABC transporter-like protein 1629671 3961127 Rfer_1512 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522776.1 1627836 R 338969 CDS YP_522777.1 89900306 3961128 1629704..1630291 1 NC_007908.1 MarR family transcriptional regulator 1630291 3961128 Rfer_1513 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_522777.1 1629704 D 338969 CDS YP_522778.1 89900307 3961129 1630281..1631732 1 NC_007908.1 RND efflux system outer membrane lipoprotein NodT 1631732 3961129 Rfer_1514 Rhodoferax ferrireducens T118 RND efflux system outer membrane lipoprotein NodT YP_522778.1 1630281 D 338969 CDS YP_522779.1 89900308 3961130 1631762..1632979 1 NC_007908.1 secretion protein HlyD 1632979 3961130 Rfer_1515 Rhodoferax ferrireducens T118 secretion protein HlyD YP_522779.1 1631762 D 338969 CDS YP_522780.1 89900309 3961131 1633008..1634591 1 NC_007908.1 EmrB/QacA family drug resistance transporter 1634591 3961131 Rfer_1516 Rhodoferax ferrireducens T118 EmrB/QacA family drug resistance transporter YP_522780.1 1633008 D 338969 CDS YP_522781.1 89900310 3961133 complement(1634859..1635716) 1 NC_007908.1 diaminopimelate dehydrogenase 1635716 3961133 Rfer_1518 Rhodoferax ferrireducens T118 diaminopimelate dehydrogenase YP_522781.1 1634859 R 338969 CDS YP_522782.1 89900311 3961134 complement(1636109..1637287) 1 NC_007908.1 putative AttH 1637287 3961134 Rfer_1519 Rhodoferax ferrireducens T118 putative AttH YP_522782.1 1636109 R 338969 CDS YP_522783.1 89900312 3960674 complement(1637295..1638338) 1 NC_007908.1 pyridoxal-5'-phosphate-dependent enzyme subunit beta 1638338 3960674 Rfer_1520 Rhodoferax ferrireducens T118 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_522783.1 1637295 R 338969 CDS YP_522784.1 89900313 3960675 complement(1638346..1639122) 1 NC_007908.1 ABC transporter-like protein 1639122 3960675 Rfer_1521 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522784.1 1638346 R 338969 CDS YP_522785.1 89900314 3960676 complement(1639159..1640289) 1 NC_007908.1 succinylglutamate desuccinylase/aspartoacylase 1640289 3960676 Rfer_1522 Rhodoferax ferrireducens T118 succinylglutamate desuccinylase/aspartoacylase YP_522785.1 1639159 R 338969 CDS YP_522786.1 89900315 3960677 complement(1640310..1641023) 1 NC_007908.1 amino acid ABC transporter permease 1641023 3960677 Rfer_1523 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_522786.1 1640310 R 338969 CDS YP_522787.1 89900316 3960678 complement(1641023..1641712) 1 NC_007908.1 amino acid ABC transporter permease 1641712 3960678 Rfer_1524 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_522787.1 1641023 R 338969 CDS YP_522788.1 89900317 3960679 complement(1641737..1642504) 1 NC_007908.1 extracellular solute-binding protein 1642504 3960679 Rfer_1525 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_522788.1 1641737 R 338969 CDS YP_522789.1 89900318 3960680 1642833..1644347 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 1644347 3960680 Rfer_1526 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_522789.1 1642833 D 338969 CDS YP_522790.1 89900319 3960681 complement(1644483..1647086) 1 NC_007908.1 hypothetical protein 1647086 3960681 Rfer_1527 Rhodoferax ferrireducens T118 hypothetical protein YP_522790.1 1644483 R 338969 CDS YP_522791.1 89900320 3960682 1647312..1647773 1 NC_007908.1 signal-transduction protein 1647773 3960682 Rfer_1528 Rhodoferax ferrireducens T118 signal-transduction protein YP_522791.1 1647312 D 338969 CDS YP_522792.1 89900321 3960683 complement(1647823..1648263) 1 NC_007908.1 4-hydroxybenzoyl-CoA thioesterase 1648263 3960683 Rfer_1529 Rhodoferax ferrireducens T118 4-hydroxybenzoyl-CoA thioesterase YP_522792.1 1647823 R 338969 CDS YP_522793.1 89900322 3960684 1648418..1649371 1 NC_007908.1 hypothetical protein 1649371 3960684 Rfer_1530 Rhodoferax ferrireducens T118 hypothetical protein YP_522793.1 1648418 D 338969 CDS YP_522794.1 89900323 3960685 1649442..1650344 1 NC_007908.1 MotA/TolQ/ExbB proton channel 1650344 3960685 Rfer_1531 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_522794.1 1649442 D 338969 CDS YP_522795.1 89900324 3960686 1650348..1650773 1 NC_007908.1 biopolymer transport protein ExbD/TolR 1650773 3960686 Rfer_1532 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_522795.1 1650348 D 338969 CDS YP_522796.1 89900325 3960687 1650763..1651194 1 NC_007908.1 biopolymer transport protein ExbD/TolR 1651194 3960687 Rfer_1533 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_522796.1 1650763 D 338969 CDS YP_522797.1 89900326 3960688 complement(1651212..1651865) 1 NC_007908.1 ABC transporter-like protein 1651865 3960688 Rfer_1534 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522797.1 1651212 R 338969 CDS YP_522798.1 89900327 3960689 complement(1651862..1652914) 1 NC_007908.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1652914 miaA 3960689 miaA Rhodoferax ferrireducens T118 tRNA delta(2)-isopentenylpyrophosphate transferase YP_522798.1 1651862 R 338969 CDS YP_522799.1 89900328 3960690 complement(1652901..1654127) 1 NC_007908.1 Bcr/CflA subfamily drug resistance transporter 1654127 3960690 Rfer_1536 Rhodoferax ferrireducens T118 Bcr/CflA subfamily drug resistance transporter YP_522799.1 1652901 R 338969 CDS YP_522800.1 89900329 3960691 complement(1654306..1654734) 1 NC_007908.1 heat shock protein Hsp20 1654734 3960691 Rfer_1537 Rhodoferax ferrireducens T118 heat shock protein Hsp20 YP_522800.1 1654306 R 338969 CDS YP_522801.1 89900330 3960692 1655025..1656512 1 NC_007908.1 putative PAS/PAC sensor protein 1656512 3960692 Rfer_1538 Rhodoferax ferrireducens T118 putative PAS/PAC sensor protein YP_522801.1 1655025 D 338969 CDS YP_522802.1 89900331 3960528 1656509..1657201 1 NC_007908.1 two component LuxR family transcriptional regulator 1657201 3960528 Rfer_1539 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_522802.1 1656509 D 338969 CDS YP_522803.1 89900332 3960529 1657356..1658114 1 NC_007908.1 Crp/FNR family transcriptional regulator 1658114 3960529 Rfer_1540 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_522803.1 1657356 D 338969 CDS YP_522804.1 89900333 3960530 1658120..1658665 1 NC_007908.1 hypothetical protein 1658665 3960530 Rfer_1541 Rhodoferax ferrireducens T118 hypothetical protein YP_522804.1 1658120 D 338969 CDS YP_522805.1 89900334 3960531 1658731..1659549 1 NC_007908.1 hypothetical protein 1659549 3960531 Rfer_1542 Rhodoferax ferrireducens T118 hypothetical protein YP_522805.1 1658731 D 338969 CDS YP_522806.1 89900335 3960532 1659623..1660201 1 NC_007908.1 hypothetical protein 1660201 3960532 Rfer_1543 Rhodoferax ferrireducens T118 hypothetical protein YP_522806.1 1659623 D 338969 CDS YP_522807.1 89900336 3960533 1660201..1661766 1 NC_007908.1 hypothetical protein 1661766 3960533 Rfer_1544 Rhodoferax ferrireducens T118 hypothetical protein YP_522807.1 1660201 D 338969 CDS YP_522808.1 89900337 3960534 complement(1661923..1663032) 1 NC_007908.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1663032 hemH 3960534 hemH Rhodoferax ferrireducens T118 ferrochelatase YP_522808.1 1661923 R 338969 CDS YP_522809.1 89900338 3960535 1663095..1664009 1 NC_007908.1 class IV aminotransferase 1664009 3960535 Rfer_1546 Rhodoferax ferrireducens T118 class IV aminotransferase YP_522809.1 1663095 D 338969 CDS YP_522810.1 89900339 3960536 complement(1664605..1667034) 1 NC_007908.1 penicillin amidase 1667034 3960536 Rfer_1547 Rhodoferax ferrireducens T118 penicillin amidase YP_522810.1 1664605 R 338969 CDS YP_522811.1 89900340 3960537 complement(1667089..1668393) 1 NC_007908.1 amine oxidase 1668393 3960537 Rfer_1548 Rhodoferax ferrireducens T118 amine oxidase YP_522811.1 1667089 R 338969 CDS YP_522812.1 89900341 3960538 complement(1668960..1669799) 1 NC_007908.1 squalene/phytoene synthase 1669799 3960538 Rfer_1549 Rhodoferax ferrireducens T118 squalene/phytoene synthase YP_522812.1 1668960 R 338969 CDS YP_522813.1 89900342 3960539 complement(1669810..1670694) 1 NC_007908.1 squalene/phytoene synthase 1670694 3960539 Rfer_1550 Rhodoferax ferrireducens T118 squalene/phytoene synthase YP_522813.1 1669810 R 338969 CDS YP_522814.1 89900343 3960540 1670842..1672038 1 NC_007908.1 secretion protein HlyD 1672038 3960540 Rfer_1551 Rhodoferax ferrireducens T118 secretion protein HlyD YP_522814.1 1670842 D 338969 CDS YP_522815.1 89900344 3960541 1672046..1675228 1 NC_007908.1 acriflavin resistance protein 1675228 3960541 Rfer_1552 Rhodoferax ferrireducens T118 acriflavin resistance protein YP_522815.1 1672046 D 338969 CDS YP_522816.1 89900345 3960543 1675454..1676764 1 NC_007908.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1676764 tig 3960543 tig Rhodoferax ferrireducens T118 trigger factor YP_522816.1 1675454 D 338969 CDS YP_522817.1 89900346 3960544 1676888..1677517 1 NC_007908.1 ATP-dependent Clp protease, proteolytic subunit ClpP 1677517 3960544 Rfer_1554 Rhodoferax ferrireducens T118 ATP-dependent Clp protease, proteolytic subunit ClpP YP_522817.1 1676888 D 338969 CDS YP_522818.1 89900347 3960545 1677523..1678788 1 NC_007908.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1678788 clpX 3960545 clpX Rhodoferax ferrireducens T118 ATP-dependent protease ATP-binding subunit ClpX YP_522818.1 1677523 D 338969 CDS YP_522819.1 89900348 3960546 1678911..1681352 1 NC_007908.1 ATP-dependent protease La 1681352 3960546 Rfer_1556 Rhodoferax ferrireducens T118 ATP-dependent protease La YP_522819.1 1678911 D 338969 CDS YP_522820.1 89900349 3963264 complement(1681974..1682723) 1 NC_007908.1 hypothetical protein 1682723 3963264 Rfer_1557 Rhodoferax ferrireducens T118 hypothetical protein YP_522820.1 1681974 R 338969 CDS YP_522821.1 89900350 3963265 complement(1682914..1685265) 1 NC_007908.1 sigma 70 (RpoD) 1685265 3963265 Rfer_1558 Rhodoferax ferrireducens T118 sigma 70 (RpoD) YP_522821.1 1682914 R 338969 CDS YP_522822.1 89900351 3963266 complement(1685694..1686134) 1 NC_007908.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1686134 3963266 Rfer_1559 Rhodoferax ferrireducens T118 camphor resistance protein CrcB YP_522822.1 1685694 R 338969 CDS YP_522823.1 89900352 3963267 1686266..1687132 1 NC_007908.1 diguanylate cyclase 1687132 3963267 Rfer_1560 Rhodoferax ferrireducens T118 diguanylate cyclase YP_522823.1 1686266 D 338969 CDS YP_522824.1 89900353 3963268 complement(1687197..1688219) 1 NC_007908.1 ADP-L-glycero-D-manno-heptose-6-epimerase 1688219 3963268 Rfer_1561 Rhodoferax ferrireducens T118 ADP-L-glycero-D-manno-heptose-6-epimerase YP_522824.1 1687197 R 338969 CDS YP_522825.1 89900354 3963269 complement(1688216..1689166) 1 NC_007908.1 bifunctional ADP-heptose synthase 1689166 3963269 Rfer_1562 Rhodoferax ferrireducens T118 bifunctional ADP-heptose synthase YP_522825.1 1688216 R 338969 CDS YP_522826.1 89900355 3963270 complement(1689163..1690320) 1 NC_007908.1 hypothetical protein 1690320 3963270 Rfer_1563 Rhodoferax ferrireducens T118 hypothetical protein YP_522826.1 1689163 R 338969 CDS YP_522827.1 89900356 3963271 complement(1690310..1690615) 1 NC_007908.1 hypothetical protein 1690615 3963271 Rfer_1564 Rhodoferax ferrireducens T118 hypothetical protein YP_522827.1 1690310 R 338969 CDS YP_522828.1 89900357 3963272 complement(1690646..1690957) 1 NC_007908.1 histone-like protein DNA-binding protein 1690957 3963272 Rfer_1565 Rhodoferax ferrireducens T118 histone-like protein DNA-binding protein YP_522828.1 1690646 R 338969 CDS YP_522829.1 89900358 3963273 complement(1691006..1692706) 1 NC_007908.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1692706 rpsA 3963273 rpsA Rhodoferax ferrireducens T118 30S ribosomal protein S1 YP_522829.1 1691006 R 338969 CDS YP_522830.1 89900359 3963274 complement(1692836..1694845) 1 NC_007908.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 1694845 3963274 Rfer_1567 Rhodoferax ferrireducens T118 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase YP_522830.1 1692836 R 338969 CDS YP_522831.1 89900360 3963275 complement(1694845..1695717) 1 NC_007908.1 prephenate dehydrogenase 1695717 3963275 Rfer_1568 Rhodoferax ferrireducens T118 prephenate dehydrogenase YP_522831.1 1694845 R 338969 CDS YP_522832.1 89900361 3963276 complement(1695718..1696800) 1 NC_007908.1 chorismate mutase 1696800 3963276 Rfer_1569 Rhodoferax ferrireducens T118 chorismate mutase YP_522832.1 1695718 R 338969 CDS YP_522833.1 89900362 3960906 complement(1696847..1697959) 1 NC_007908.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1697959 3960906 Rfer_1570 Rhodoferax ferrireducens T118 phosphoserine aminotransferase YP_522833.1 1696847 R 338969 CDS YP_522834.1 89900363 3960907 complement(1698030..1700672) 1 NC_007908.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1700672 3960907 Rfer_1571 Rhodoferax ferrireducens T118 DNA gyrase subunit A YP_522834.1 1698030 R 338969 CDS YP_522835.1 89900364 3960908 1700935..1701573 1 NC_007908.1 OmpA/MotB 1701573 3960908 Rfer_1572 Rhodoferax ferrireducens T118 OmpA/MotB YP_522835.1 1700935 D 338969 CDS YP_522836.1 89900365 3960910 complement(1702071..1702850) 1 NC_007908.1 enoyl-CoA hydratase/isomerase 1702850 3960910 Rfer_1573 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_522836.1 1702071 R 338969 CDS YP_522837.1 89900366 3960911 complement(1702899..1704725) 1 NC_007908.1 peptidase M61 1704725 3960911 Rfer_1574 Rhodoferax ferrireducens T118 peptidase M61 YP_522837.1 1702899 R 338969 CDS YP_522838.1 89900367 3960912 complement(1704869..1705612) 1 NC_007908.1 thiol:disulfide interchange protein DsbC 1705612 3960912 Rfer_1575 Rhodoferax ferrireducens T118 thiol:disulfide interchange protein DsbC YP_522838.1 1704869 R 338969 CDS YP_522839.1 89900368 3960913 complement(1705612..1706739) 1 NC_007908.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 1706739 3960913 Rfer_1576 Rhodoferax ferrireducens T118 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_522839.1 1705612 R 338969 CDS YP_522840.1 89900369 3960914 1707212..1708747 1 NC_007908.1 protease-like protein 1708747 3960914 Rfer_1577 Rhodoferax ferrireducens T118 protease-like protein YP_522840.1 1707212 D 338969 CDS YP_522841.1 89900370 3960915 1709084..1710169 1 NC_007908.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1710169 3960915 Rfer_1578 Rhodoferax ferrireducens T118 GTP-dependent nucleic acid-binding protein EngD YP_522841.1 1709084 D 338969 CDS YP_522842.1 89900371 3960916 complement(1710266..1710736) 1 NC_007908.1 hypothetical protein 1710736 3960916 Rfer_1579 Rhodoferax ferrireducens T118 hypothetical protein YP_522842.1 1710266 R 338969 CDS YP_522843.1 89900372 3960917 1710885..1711937 1 NC_007908.1 dihydrouridine synthase TIM-barrel protein nifR3 1711937 3960917 Rfer_1580 Rhodoferax ferrireducens T118 dihydrouridine synthase TIM-barrel protein nifR3 YP_522843.1 1710885 D 338969 CDS YP_522844.1 89900373 3960918 1711934..1712170 1 NC_007908.1 helix-turn-helix, Fis-type 1712170 3960918 Rfer_1581 Rhodoferax ferrireducens T118 helix-turn-helix, Fis-type YP_522844.1 1711934 D 338969 CDS YP_522845.1 89900374 3960919 1712229..1713827 1 NC_007908.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1713827 purH 3960919 purH Rhodoferax ferrireducens T118 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_522845.1 1712229 D 338969 CDS YP_522846.1 89900375 3960920 complement(1714025..1715452) 1 NC_007908.1 class I cytochrome c 1715452 3960920 Rfer_1583 Rhodoferax ferrireducens T118 class I cytochrome c YP_522846.1 1714025 R 338969 CDS YP_522847.1 89900376 3960921 1715654..1716610 1 NC_007908.1 hypothetical protein 1716610 3960921 Rfer_1584 Rhodoferax ferrireducens T118 hypothetical protein YP_522847.1 1715654 D 338969 CDS YP_522848.1 89900377 3960922 1716607..1717824 1 NC_007908.1 hypothetical protein 1717824 3960922 Rfer_1585 Rhodoferax ferrireducens T118 hypothetical protein YP_522848.1 1716607 D 338969 CDS YP_522849.1 89900378 3960923 complement(1717936..1718691) 1 NC_007908.1 hypothetical protein 1718691 3960923 Rfer_1586 Rhodoferax ferrireducens T118 hypothetical protein YP_522849.1 1717936 R 338969 CDS YP_522850.1 89900379 3960638 1718855..1719289 1 NC_007908.1 hypothetical protein 1719289 3960638 Rfer_1587 Rhodoferax ferrireducens T118 hypothetical protein YP_522850.1 1718855 D 338969 CDS YP_522851.1 89900380 3960639 complement(1719347..1720012) 1 NC_007908.1 class I cytochrome c 1720012 3960639 Rfer_1588 Rhodoferax ferrireducens T118 class I cytochrome c YP_522851.1 1719347 R 338969 CDS YP_522852.1 89900381 3960640 1720115..1720969 1 NC_007908.1 AAA_5 ATPase 1720969 3960640 Rfer_1589 Rhodoferax ferrireducens T118 AAA_5 ATPase YP_522852.1 1720115 D 338969 CDS YP_522853.1 89900382 3960641 1720996..1721598 1 NC_007908.1 GCN5-like protein N-acetyltransferase 1721598 3960641 Rfer_1590 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_522853.1 1720996 D 338969 CDS YP_522854.1 89900383 3960642 1721630..1722841 1 NC_007908.1 hypothetical protein 1722841 3960642 Rfer_1591 Rhodoferax ferrireducens T118 hypothetical protein YP_522854.1 1721630 D 338969 CDS YP_522855.1 89900384 3960643 1722838..1724703 1 NC_007908.1 surface antigen (D15) 1724703 3960643 Rfer_1592 Rhodoferax ferrireducens T118 surface antigen (D15) YP_522855.1 1722838 D 338969 CDS YP_522856.1 89900385 3960644 1724703..1728581 1 NC_007908.1 hypothetical protein 1728581 3960644 Rfer_1593 Rhodoferax ferrireducens T118 hypothetical protein YP_522856.1 1724703 D 338969 CDS YP_522857.1 89900386 3960646 complement(1728723..1730348) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1730348 3960646 Rfer_1594 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_522857.1 1728723 R 338969 CDS YP_522858.1 89900387 3960647 1730406..1731491 1 NC_007908.1 ABC transporter-like protein 1731491 3960647 Rfer_1595 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522858.1 1730406 D 338969 CDS YP_522859.1 89900388 3960648 1731583..1732044 1 NC_007908.1 hypothetical protein 1732044 3960648 Rfer_1596 Rhodoferax ferrireducens T118 hypothetical protein YP_522859.1 1731583 D 338969 CDS YP_522860.1 89900389 3960649 complement(1732177..1732911) 1 NC_007908.1 cytochrome c biogenesis transmembrane protein 1732911 3960649 Rfer_1597 Rhodoferax ferrireducens T118 cytochrome c biogenesis transmembrane protein YP_522860.1 1732177 R 338969 CDS YP_522861.1 89900390 3960650 complement(1732924..1733304) 1 NC_007908.1 hypothetical protein 1733304 3960650 Rfer_1598 Rhodoferax ferrireducens T118 hypothetical protein YP_522861.1 1732924 R 338969 CDS YP_522862.1 89900391 3960651 complement(1733358..1734080) 1 NC_007908.1 hypothetical protein 1734080 3960651 Rfer_1599 Rhodoferax ferrireducens T118 hypothetical protein YP_522862.1 1733358 R 338969 CDS YP_522863.1 89900392 3960652 1734643..1735098 1 NC_007908.1 hypothetical protein 1735098 3960652 Rfer_1600 Rhodoferax ferrireducens T118 hypothetical protein YP_522863.1 1734643 D 338969 CDS YP_522864.1 89900393 3960653 1735107..1736252 1 NC_007908.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1736252 3960653 Rfer_1601 Rhodoferax ferrireducens T118 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_522864.1 1735107 D 338969 CDS YP_522865.1 89900394 3960654 1736386..1736610 1 NC_007908.1 hypothetical protein 1736610 3960654 Rfer_1602 Rhodoferax ferrireducens T118 hypothetical protein YP_522865.1 1736386 D 338969 CDS YP_522866.1 89900395 3960655 1736610..1737236 1 NC_007908.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1737236 3960655 Rfer_1603 Rhodoferax ferrireducens T118 RNA polymerase sigma factor YP_522866.1 1736610 D 338969 CDS YP_522867.1 89900396 3960656 1737236..1737430 1 NC_007908.1 hypothetical protein 1737430 3960656 Rfer_1604 Rhodoferax ferrireducens T118 hypothetical protein YP_522867.1 1737236 D 338969 CDS YP_522868.1 89900397 3960469 complement(1737494..1738021) 1 NC_007908.1 DoxX 1738021 3960469 Rfer_1605 Rhodoferax ferrireducens T118 DoxX YP_522868.1 1737494 R 338969 CDS YP_522869.1 89900398 3960470 complement(1738005..1738790) 1 NC_007908.1 hypothetical protein 1738790 3960470 Rfer_1606 Rhodoferax ferrireducens T118 hypothetical protein YP_522869.1 1738005 R 338969 CDS YP_522870.1 89900399 3960471 complement(1738787..1739749) 1 NC_007908.1 hypothetical protein 1739749 3960471 Rfer_1607 Rhodoferax ferrireducens T118 hypothetical protein YP_522870.1 1738787 R 338969 CDS YP_522871.1 89900400 3960472 complement(1739779..1740168) 1 NC_007908.1 integral membrane protein-like protein 1740168 3960472 Rfer_1608 Rhodoferax ferrireducens T118 integral membrane protein-like protein YP_522871.1 1739779 R 338969 CDS YP_522872.1 89900401 3960474 1740774..1741700 1 NC_007908.1 hypothetical protein 1741700 3960474 Rfer_1610 Rhodoferax ferrireducens T118 hypothetical protein YP_522872.1 1740774 D 338969 CDS YP_522873.1 89900402 3960475 1742091..1743053 1 NC_007908.1 radical SAM family protein 1743053 3960475 Rfer_1611 Rhodoferax ferrireducens T118 radical SAM family protein YP_522873.1 1742091 D 338969 CDS YP_522874.1 89900403 3960476 1743166..1744236 1 NC_007908.1 UbiE/COQ5 methyltransferase 1744236 3960476 Rfer_1612 Rhodoferax ferrireducens T118 UbiE/COQ5 methyltransferase YP_522874.1 1743166 D 338969 CDS YP_522875.1 89900404 3960477 complement(1744260..1746557) 1 NC_007908.1 selenide, water dikinase 1746557 3960477 Rfer_1613 Rhodoferax ferrireducens T118 selenide, water dikinase YP_522875.1 1744260 R 338969 CDS YP_522876.1 89900405 3960478 complement(1746585..1747577) 1 NC_007908.1 group 1 glycosyl transferase 1747577 3960478 Rfer_1614 Rhodoferax ferrireducens T118 group 1 glycosyl transferase YP_522876.1 1746585 R 338969 CDS YP_522877.1 89900406 3960479 1747730..1748593 1 NC_007908.1 phosphonate-binding periplasmic protein 1748593 3960479 Rfer_1615 Rhodoferax ferrireducens T118 phosphonate-binding periplasmic protein YP_522877.1 1747730 D 338969 CDS YP_522878.1 89900407 3960480 1748669..1749502 1 NC_007908.1 ABC transporter-like protein 1749502 3960480 Rfer_1616 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_522878.1 1748669 D 338969 CDS YP_522879.1 89900408 3960481 1749518..1750372 1 NC_007908.1 phosphonate ABC transporter permease 1750372 3960481 Rfer_1617 Rhodoferax ferrireducens T118 phosphonate ABC transporter permease YP_522879.1 1749518 D 338969 CDS YP_522880.1 89900409 3960482 1750383..1751207 1 NC_007908.1 phosphonate ABC transporter permease 1751207 3960482 Rfer_1618 Rhodoferax ferrireducens T118 phosphonate ABC transporter permease YP_522880.1 1750383 D 338969 CDS YP_522881.1 89900410 3960483 complement(1751226..1752422) 1 NC_007908.1 hypothetical protein 1752422 3960483 Rfer_1619 Rhodoferax ferrireducens T118 hypothetical protein YP_522881.1 1751226 R 338969 CDS YP_522882.1 89900411 3960484 complement(1752458..1752790) 1 NC_007908.1 MerR family transcriptional regulator 1752790 3960484 Rfer_1620 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_522882.1 1752458 R 338969 CDS YP_522883.1 89900412 3960485 1753133..1755283 1 NC_007908.1 pyridine nucleotide-disulfide oxidoreductase dimerisation protein 1755283 3960485 Rfer_1621 Rhodoferax ferrireducens T118 pyridine nucleotide-disulfide oxidoreductase dimerisation protein YP_522883.1 1753133 D 338969 CDS YP_522884.1 89900413 3960486 1755289..1755678 1 NC_007908.1 hypothetical protein 1755678 3960486 Rfer_1622 Rhodoferax ferrireducens T118 hypothetical protein YP_522884.1 1755289 D 338969 CDS YP_522885.1 89900414 3960487 1755675..1756349 1 NC_007908.1 glycosyl transferase family protein 1756349 3960487 Rfer_1623 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_522885.1 1755675 D 338969 CDS YP_522886.1 89900415 3964153 1756346..1757005 1 NC_007908.1 hypothetical protein 1757005 3964153 Rfer_1624 Rhodoferax ferrireducens T118 hypothetical protein YP_522886.1 1756346 D 338969 CDS YP_522887.1 89900416 3964155 complement(1757338..1758255) 1 NC_007908.1 hypothetical protein 1758255 3964155 Rfer_1626 Rhodoferax ferrireducens T118 hypothetical protein YP_522887.1 1757338 R 338969 CDS YP_522888.1 89900417 3964156 1758330..1759337 1 NC_007908.1 serine/threonine protein kinase 1759337 3964156 Rfer_1627 Rhodoferax ferrireducens T118 serine/threonine protein kinase YP_522888.1 1758330 D 338969 CDS YP_522889.1 89900418 3964157 1759334..1760251 1 NC_007908.1 protein serine/threonine phosphatase 1760251 3964157 Rfer_1628 Rhodoferax ferrireducens T118 protein serine/threonine phosphatase YP_522889.1 1759334 D 338969 CDS YP_522890.1 89900419 3964158 1760267..1760998 1 NC_007908.1 ribonuclease PH 1760998 3964158 Rfer_1629 Rhodoferax ferrireducens T118 ribonuclease PH YP_522890.1 1760267 D 338969 CDS YP_522891.1 89900420 3964159 1761038..1761637 1 NC_007908.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1761637 3964159 Rfer_1630 Rhodoferax ferrireducens T118 putative deoxyribonucleotide triphosphate pyrophosphatase YP_522891.1 1761038 D 338969 CDS YP_522892.1 89900421 3964160 1761703..1762887 1 NC_007908.1 putative oxygen-independent coproporphyrinogen III oxidase 1762887 3964160 Rfer_1631 Rhodoferax ferrireducens T118 putative oxygen-independent coproporphyrinogen III oxidase YP_522892.1 1761703 D 338969 CDS YP_522893.1 89900422 3964161 1762978..1763613 1 NC_007908.1 CBS domain-containing protein 1763613 3964161 Rfer_1632 Rhodoferax ferrireducens T118 CBS domain-containing protein YP_522893.1 1762978 D 338969 CDS YP_522894.1 89900423 3964162 complement(1763540..1764007) 1 NC_007908.1 hypothetical protein 1764007 3964162 Rfer_1633 Rhodoferax ferrireducens T118 hypothetical protein YP_522894.1 1763540 R 338969 CDS YP_522895.1 89900424 3964163 complement(1764009..1766111) 1 NC_007908.1 TRAP transporter, 4TM/12TM fusion protein 1766111 3964163 Rfer_1634 Rhodoferax ferrireducens T118 TRAP transporter, 4TM/12TM fusion protein YP_522895.1 1764009 R 338969 CDS YP_522896.1 89900425 3964164 complement(1766250..1767209) 1 NC_007908.1 TRAP transporter solute receptor TAXI family protein 1767209 3964164 Rfer_1635 Rhodoferax ferrireducens T118 TRAP transporter solute receptor TAXI family protein YP_522896.1 1766250 R 338969 CDS YP_522897.1 89900426 3964165 complement(1767391..1768326) 1 NC_007908.1 dihydrodipicolinate synthetase 1768326 3964165 Rfer_1636 Rhodoferax ferrireducens T118 dihydrodipicolinate synthetase YP_522897.1 1767391 R 338969 CDS YP_522898.1 89900427 3964166 complement(1768323..1769042) 1 NC_007908.1 hypothetical protein 1769042 3964166 Rfer_1637 Rhodoferax ferrireducens T118 hypothetical protein YP_522898.1 1768323 R 338969 CDS YP_522899.1 89900428 3964167 complement(1769068..1769877) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 1769877 3964167 Rfer_1638 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_522899.1 1769068 R 338969 CDS YP_522900.1 89900429 3964168 1769999..1770874 1 NC_007908.1 LysR family transcriptional regulator 1770874 3964168 Rfer_1639 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_522900.1 1769999 D 338969 CDS YP_522901.1 89900430 3964169 complement(1770966..1772066) 1 NC_007908.1 FAD dependent oxidoreductase 1772066 3964169 Rfer_1640 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_522901.1 1770966 R 338969 CDS YP_522902.1 89900431 3964170 complement(1772053..1772823) 1 NC_007908.1 GntR-like protein 1772823 3964170 Rfer_1641 Rhodoferax ferrireducens T118 GntR-like protein YP_522902.1 1772053 R 338969 CDS YP_522903.1 89900432 3964171 complement(1772909..1773241) 1 NC_007908.1 hypothetical protein 1773241 3964171 Rfer_1642 Rhodoferax ferrireducens T118 hypothetical protein YP_522903.1 1772909 R 338969 CDS YP_522904.1 89900433 3964172 complement(1773305..1774288) 1 NC_007908.1 zinc-binding alcohol dehydrogenase 1774288 3964172 Rfer_1643 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_522904.1 1773305 R 338969 CDS YP_522905.1 89900434 3962763 1774403..1774576 1 NC_007908.1 hypothetical protein 1774576 3962763 Rfer_1644 Rhodoferax ferrireducens T118 hypothetical protein YP_522905.1 1774403 D 338969 CDS YP_522906.1 89900435 3962764 complement(1774686..1775801) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 1775801 3962764 Rfer_1645 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_522906.1 1774686 R 338969 CDS YP_522907.1 89900436 3962765 complement(1775837..1777018) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 1777018 3962765 Rfer_1646 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_522907.1 1775837 R 338969 CDS YP_522908.1 89900437 3962766 1777430..1778221 1 NC_007908.1 CRP/FNR family transcriptional regulator 1778221 3962766 Rfer_1647 Rhodoferax ferrireducens T118 CRP/FNR family transcriptional regulator YP_522908.1 1777430 D 338969 CDS YP_522909.1 89900438 3962767 complement(1778218..1778904) 1 NC_007908.1 hypothetical protein 1778904 3962767 Rfer_1648 Rhodoferax ferrireducens T118 hypothetical protein YP_522909.1 1778218 R 338969 CDS YP_522910.1 89900439 3962768 1778939..1779532 1 NC_007908.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1779532 purN 3962768 purN Rhodoferax ferrireducens T118 phosphoribosylglycinamide formyltransferase YP_522910.1 1778939 D 338969 CDS YP_522911.1 89900440 3962769 complement(1780027..1781031) 1 NC_007908.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1781031 hrcA 3962769 hrcA Rhodoferax ferrireducens T118 heat-inducible transcription repressor YP_522911.1 1780027 R 338969 CDS YP_522912.1 89900441 3962770 1781060..1781956 1 NC_007908.1 catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 1781956 ppnK 3962770 ppnK Rhodoferax ferrireducens T118 NAD(+)/NADH kinase family protein YP_522912.1 1781060 D 338969 CDS YP_522913.1 89900442 3962771 1781959..1783635 1 NC_007908.1 DNA repair protein RecN 1783635 3962771 Rfer_1652 Rhodoferax ferrireducens T118 DNA repair protein RecN YP_522913.1 1781959 D 338969 CDS YP_522914.1 89900443 3962772 1783616..1784521 1 NC_007908.1 hypothetical protein 1784521 3962772 Rfer_1653 Rhodoferax ferrireducens T118 hypothetical protein YP_522914.1 1783616 D 338969 CDS YP_522915.1 89900444 3962773 complement(1784507..1785541) 1 NC_007908.1 A/G-specific adenine glycosylase 1785541 3962773 Rfer_1654 Rhodoferax ferrireducens T118 A/G-specific adenine glycosylase YP_522915.1 1784507 R 338969 CDS YP_522916.1 89900445 3962774 complement(1785559..1787538) 1 NC_007908.1 hypothetical protein 1787538 3962774 Rfer_1655 Rhodoferax ferrireducens T118 hypothetical protein YP_522916.1 1785559 R 338969 CDS YP_522917.1 89900446 3962775 complement(1787588..1788403) 1 NC_007908.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1788403 3962775 Rfer_1656 Rhodoferax ferrireducens T118 formamidopyrimidine-DNA glycosylase YP_522917.1 1787588 R 338969 CDS YP_522918.1 89900447 3962776 1788424..1790187 1 NC_007908.1 hypothetical protein 1790187 3962776 Rfer_1657 Rhodoferax ferrireducens T118 hypothetical protein YP_522918.1 1788424 D 338969 CDS YP_522919.1 89900448 3962777 1790187..1790696 1 NC_007908.1 putative outer membrane lipoprotein 1790696 3962777 Rfer_1658 Rhodoferax ferrireducens T118 putative outer membrane lipoprotein YP_522919.1 1790187 D 338969 CDS YP_522920.1 89900449 3962778 1790693..1791556 1 NC_007908.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1791556 ipk 3962778 ipk Rhodoferax ferrireducens T118 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_522920.1 1790693 D 338969 CDS YP_522921.1 89900450 3962780 1791716..1792693 1 NC_007908.1 ribose-phosphate pyrophosphokinase 1792693 3962780 Rfer_1660 Rhodoferax ferrireducens T118 ribose-phosphate pyrophosphokinase YP_522921.1 1791716 D 338969 CDS YP_522922.1 89900451 3960410 1792838..1793509 1 NC_007908.1 ribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL5 1793509 3960410 Rfer_1661 Rhodoferax ferrireducens T118 ribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL5 YP_522922.1 1792838 D 338969 CDS YP_522923.1 89900452 3960411 1793597..1794274 1 NC_007908.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1794274 3960411 Rfer_1662 Rhodoferax ferrireducens T118 peptidyl-tRNA hydrolase YP_522923.1 1793597 D 338969 CDS YP_522924.1 89900453 3960412 1794315..1794767 1 NC_007908.1 hypothetical protein 1794767 3960412 Rfer_1663 Rhodoferax ferrireducens T118 hypothetical protein YP_522924.1 1794315 D 338969 CDS YP_522925.1 89900454 3960413 complement(1794792..1795061) 1 NC_007908.1 4Fe-4S ferredoxin 1795061 3960413 Rfer_1664 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_522925.1 1794792 R 338969 CDS YP_522926.1 89900455 3960414 complement(1795240..1797909) 1 NC_007908.1 E1-E2 type ATPase 1797909 3960414 Rfer_1665 Rhodoferax ferrireducens T118 E1-E2 type ATPase YP_522926.1 1795240 R 338969 CDS YP_522927.1 89900456 3960415 complement(1797938..1798408) 1 NC_007908.1 hypothetical protein 1798408 3960415 Rfer_1666 Rhodoferax ferrireducens T118 hypothetical protein YP_522927.1 1797938 R 338969 CDS YP_522928.1 89900457 3960416 complement(1798536..1799036) 1 NC_007908.1 coenzyme A biosynthesis protein 1799036 3960416 Rfer_1667 Rhodoferax ferrireducens T118 coenzyme A biosynthesis protein YP_522928.1 1798536 R 338969 CDS YP_522929.1 89900458 3960417 complement(1799121..1799783) 1 NC_007908.1 hypothetical protein 1799783 3960417 Rfer_1668 Rhodoferax ferrireducens T118 hypothetical protein YP_522929.1 1799121 R 338969 CDS YP_522930.1 89900459 3960418 complement(1799797..1800777) 1 NC_007908.1 ribonuclease BN 1800777 3960418 Rfer_1669 Rhodoferax ferrireducens T118 ribonuclease BN YP_522930.1 1799797 R 338969 CDS YP_522931.1 89900460 3960419 complement(1800854..1802269) 1 NC_007908.1 peptidase M16-like protein 1802269 3960419 Rfer_1670 Rhodoferax ferrireducens T118 peptidase M16-like protein YP_522931.1 1800854 R 338969 CDS YP_522932.1 89900461 3960420 complement(1802269..1803798) 1 NC_007908.1 peptidase M16-like protein 1803798 3960420 Rfer_1671 Rhodoferax ferrireducens T118 peptidase M16-like protein YP_522932.1 1802269 R 338969 CDS YP_522933.1 89900462 3960421 1803828..1804922 1 NC_007908.1 signal recognition particle-docking protein FtsY 1804922 3960421 Rfer_1672 Rhodoferax ferrireducens T118 signal recognition particle-docking protein FtsY YP_522933.1 1803828 D 338969 CDS YP_522934.1 89900463 3960422 1804999..1806030 1 NC_007908.1 diguanylate cyclase 1806030 3960422 Rfer_1673 Rhodoferax ferrireducens T118 diguanylate cyclase YP_522934.1 1804999 D 338969 CDS YP_522935.1 89900464 3960423 1806093..1806764 1 NC_007908.1 carboxylesterase 1806764 3960423 Rfer_1674 Rhodoferax ferrireducens T118 carboxylesterase YP_522935.1 1806093 D 338969 CDS YP_522936.1 89900465 3960424 1806843..1807460 1 NC_007908.1 cobyrinic acid a,c-diamide synthase 1807460 3960424 Rfer_1675 Rhodoferax ferrireducens T118 cobyrinic acid a,c-diamide synthase YP_522936.1 1806843 D 338969 CDS YP_522937.1 89900466 3960425 1807537..1807992 1 NC_007908.1 MaoC-like protein dehydratase 1807992 3960425 Rfer_1676 Rhodoferax ferrireducens T118 MaoC-like protein dehydratase YP_522937.1 1807537 D 338969 CDS YP_522938.1 89900467 3960426 complement(1807969..1808454) 1 NC_007908.1 tRNA/rRNA methyltransferase SpoU 1808454 3960426 Rfer_1677 Rhodoferax ferrireducens T118 tRNA/rRNA methyltransferase SpoU YP_522938.1 1807969 R 338969 CDS YP_522939.1 89900468 3960427 complement(1808464..1809156) 1 NC_007908.1 ComF family protein 1809156 3960427 Rfer_1678 Rhodoferax ferrireducens T118 ComF family protein YP_522939.1 1808464 R 338969 CDS YP_522940.1 89900469 3960428 1809209..1810096 1 NC_007908.1 hypothetical protein 1810096 3960428 Rfer_1679 Rhodoferax ferrireducens T118 hypothetical protein YP_522940.1 1809209 D 338969 CDS YP_522941.1 89900470 3960429 1810240..1811448 1 NC_007908.1 cytochrome c oxidase subunit II 1811448 3960429 Rfer_1680 Rhodoferax ferrireducens T118 cytochrome c oxidase subunit II YP_522941.1 1810240 D 338969 CDS YP_522942.1 89900471 3960693 1811489..1813108 1 NC_007908.1 cytochrome-c oxidase 1813108 3960693 Rfer_1681 Rhodoferax ferrireducens T118 cytochrome-c oxidase YP_522942.1 1811489 D 338969 CDS YP_522943.1 89900472 3960694 1813271..1813843 1 NC_007908.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 1813843 3960694 Rfer_1682 Rhodoferax ferrireducens T118 cytochrome C oxidase assembly protein YP_522943.1 1813271 D 338969 CDS YP_522944.1 89900473 3960695 1813840..1814061 1 NC_007908.1 hypothetical protein 1814061 3960695 Rfer_1683 Rhodoferax ferrireducens T118 hypothetical protein YP_522944.1 1813840 D 338969 CDS YP_522945.1 89900474 3960696 1814117..1814998 1 NC_007908.1 cytochrome c oxidase subunit III 1814998 3960696 Rfer_1684 Rhodoferax ferrireducens T118 cytochrome c oxidase subunit III YP_522945.1 1814117 D 338969 CDS YP_522946.1 89900475 3960697 complement(1815068..1815289) 1 NC_007908.1 hypothetical protein 1815289 3960697 Rfer_1685 Rhodoferax ferrireducens T118 hypothetical protein YP_522946.1 1815068 R 338969 CDS YP_522947.1 89900476 3960698 1815356..1816027 1 NC_007908.1 hypothetical protein 1816027 3960698 Rfer_1686 Rhodoferax ferrireducens T118 hypothetical protein YP_522947.1 1815356 D 338969 CDS YP_522948.1 89900477 3960699 1816074..1816760 1 NC_007908.1 hypothetical protein 1816760 3960699 Rfer_1687 Rhodoferax ferrireducens T118 hypothetical protein YP_522948.1 1816074 D 338969 CDS YP_522949.1 89900478 3960700 1816750..1817946 1 NC_007908.1 cytochrome oxidase assembly 1817946 3960700 Rfer_1688 Rhodoferax ferrireducens T118 cytochrome oxidase assembly YP_522949.1 1816750 D 338969 CDS YP_522950.1 89900479 3960701 1817943..1818839 1 NC_007908.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1818839 3960701 Rfer_1689 Rhodoferax ferrireducens T118 protoheme IX farnesyltransferase YP_522950.1 1817943 D 338969 CDS YP_522951.1 89900480 3960702 1818846..1819451 1 NC_007908.1 electron transport protein SCO1/SenC 1819451 3960702 Rfer_1690 Rhodoferax ferrireducens T118 electron transport protein SCO1/SenC YP_522951.1 1818846 D 338969 CDS YP_522952.1 89900481 3960703 complement(1819713..1820705) 1 NC_007908.1 hypothetical protein 1820705 3960703 Rfer_1691 Rhodoferax ferrireducens T118 hypothetical protein YP_522952.1 1819713 R 338969 CDS YP_522953.1 89900482 3960704 complement(1820778..1821719) 1 NC_007908.1 sigma 32 (RpoH) 1821719 3960704 Rfer_1692 Rhodoferax ferrireducens T118 sigma 32 (RpoH) YP_522953.1 1820778 R 338969 CDS YP_522954.1 89900483 3960705 1822284..1823042 1 NC_007908.1 hypothetical protein 1823042 3960705 Rfer_1693 Rhodoferax ferrireducens T118 hypothetical protein YP_522954.1 1822284 D 338969 CDS YP_522955.1 89900484 3960706 complement(1823122..1825158) 1 NC_007908.1 integral membrane protein-like protein 1825158 3960706 Rfer_1694 Rhodoferax ferrireducens T118 integral membrane protein-like protein YP_522955.1 1823122 R 338969 CDS YP_522956.1 89900485 3960707 1825515..1825718 1 NC_007908.1 4Fe-4S ferredoxin 1825718 3960707 Rfer_1695 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_522956.1 1825515 D 338969 CDS YP_522957.1 89900486 3960708 complement(1825902..1826483) 1 NC_007908.1 phenylacetic acid degradation-like protein 1826483 3960708 Rfer_1696 Rhodoferax ferrireducens T118 phenylacetic acid degradation-like protein YP_522957.1 1825902 R 338969 CDS YP_522958.1 89900487 3960709 1826512..1826994 1 NC_007908.1 MarR family transcriptional regulator 1826994 3960709 Rfer_1697 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_522958.1 1826512 D 338969 CDS YP_522959.1 89900488 3960710 1826942..1828225 1 NC_007908.1 major facilitator transporter 1828225 3960710 Rfer_1698 Rhodoferax ferrireducens T118 major facilitator transporter YP_522959.1 1826942 D 338969 CDS YP_522960.1 89900489 3960711 1828546..1830231 1 NC_007908.1 NAD+ synthetase 1830231 3960711 Rfer_1699 Rhodoferax ferrireducens T118 NAD+ synthetase YP_522960.1 1828546 D 338969 CDS YP_522961.1 89900490 3962497 1830257..1830595 1 NC_007908.1 nitrogen regulatory protein P-II (GlnB, GlnK) 1830595 3962497 Rfer_1700 Rhodoferax ferrireducens T118 nitrogen regulatory protein P-II (GlnB, GlnK) YP_522961.1 1830257 D 338969 CDS YP_522962.1 89900491 3962498 1830743..1833106 1 NC_007908.1 hypothetical protein 1833106 3962498 Rfer_1701 Rhodoferax ferrireducens T118 hypothetical protein YP_522962.1 1830743 D 338969 CDS YP_522963.1 89900492 3962499 1833111..1834307 1 NC_007908.1 secretion protein HlyD 1834307 3962499 Rfer_1702 Rhodoferax ferrireducens T118 secretion protein HlyD YP_522963.1 1833111 D 338969 CDS YP_522964.1 89900493 3962500 1834531..1835361 1 NC_007908.1 Crp/FNR family transcriptional regulator 1835361 3962500 Rfer_1703 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_522964.1 1834531 D 338969 CDS YP_522965.1 89900494 3962501 complement(1835471..1836043) 1 NC_007908.1 methylated-DNA--protein-cysteine methyltransferase 1836043 3962501 Rfer_1704 Rhodoferax ferrireducens T118 methylated-DNA--protein-cysteine methyltransferase YP_522965.1 1835471 R 338969 CDS YP_522966.1 89900495 3962503 complement(1836557..1836967) 1 NC_007908.1 cupin 2 protein 1836967 3962503 Rfer_1706 Rhodoferax ferrireducens T118 cupin 2 protein YP_522966.1 1836557 R 338969 CDS YP_522967.1 89900496 3962504 complement(1837258..1837587) 1 NC_007908.1 cupin 2 protein 1837587 3962504 Rfer_1707 Rhodoferax ferrireducens T118 cupin 2 protein YP_522967.1 1837258 R 338969 CDS YP_522968.1 89900497 3962506 1837996..1839870 1 NC_007908.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1839870 3962506 Rfer_1708 Rhodoferax ferrireducens T118 thiamine biosynthesis protein ThiC YP_522968.1 1837996 D 338969 CDS YP_522969.1 89900498 3962507 complement(1839921..1841525) 1 NC_007908.1 hypothetical protein 1841525 3962507 Rfer_1709 Rhodoferax ferrireducens T118 hypothetical protein YP_522969.1 1839921 R 338969 CDS YP_522970.1 89900499 3962508 complement(1841589..1843040) 1 NC_007908.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1843040 3962508 Rfer_1710 Rhodoferax ferrireducens T118 argininosuccinate lyase YP_522970.1 1841589 R 338969 CDS YP_522971.1 89900500 3962509 1843128..1844171 1 NC_007908.1 histidine kinase internal protein 1844171 3962509 Rfer_1711 Rhodoferax ferrireducens T118 histidine kinase internal protein YP_522971.1 1843128 D 338969 CDS YP_522972.1 89900501 3962510 1844191..1844931 1 NC_007908.1 LytR/AlgR family transcriptional regulator 1844931 3962510 Rfer_1712 Rhodoferax ferrireducens T118 LytR/AlgR family transcriptional regulator YP_522972.1 1844191 D 338969 CDS YP_522973.1 89900502 3962511 1845251..1848088 1 NC_007908.1 hypothetical protein 1848088 3962511 Rfer_1713 Rhodoferax ferrireducens T118 hypothetical protein YP_522973.1 1845251 D 338969 CDS YP_522974.1 89900503 3962512 complement(1848383..1851256) 1 NC_007908.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1851256 3962512 Rfer_1714 Rhodoferax ferrireducens T118 phosphoenolpyruvate carboxylase YP_522974.1 1848383 R 338969 CDS YP_522975.1 89900504 3962513 1851358..1852305 1 NC_007908.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1852305 hemC 3962513 hemC Rhodoferax ferrireducens T118 porphobilinogen deaminase YP_522975.1 1851358 D 338969 CDS YP_522976.1 89900505 3962514 1852306..1853127 1 NC_007908.1 uroporphyrinogen III synthase 1853127 3962514 Rfer_1716 Rhodoferax ferrireducens T118 uroporphyrinogen III synthase YP_522976.1 1852306 D 338969 CDS YP_522977.1 89900506 3962515 1853193..1854302 1 NC_007908.1 hypothetical protein 1854302 3962515 Rfer_1717 Rhodoferax ferrireducens T118 hypothetical protein YP_522977.1 1853193 D 338969 CDS YP_522978.1 89900507 3964017 1854311..1855600 1 NC_007908.1 hypothetical protein 1855600 3964017 Rfer_1718 Rhodoferax ferrireducens T118 hypothetical protein YP_522978.1 1854311 D 338969 CDS YP_522979.1 89900508 3964018 1855635..1856708 1 NC_007908.1 diguanylate cyclase 1856708 3964018 Rfer_1719 Rhodoferax ferrireducens T118 diguanylate cyclase YP_522979.1 1855635 D 338969 CDS YP_522980.1 89900509 3964019 complement(1856782..1859805) 1 NC_007908.1 ribonuclease 1859805 3964019 Rfer_1720 Rhodoferax ferrireducens T118 ribonuclease YP_522980.1 1856782 R 338969 CDS YP_522981.1 89900510 3964020 1860331..1861371 1 NC_007908.1 pseudouridine synthase RluD 1861371 3964020 Rfer_1721 Rhodoferax ferrireducens T118 pseudouridine synthase RluD YP_522981.1 1860331 D 338969 CDS YP_522982.1 89900511 3964021 1861349..1862035 1 NC_007908.1 HAD family hydrolase 1862035 3964021 Rfer_1722 Rhodoferax ferrireducens T118 HAD family hydrolase YP_522982.1 1861349 D 338969 CDS YP_522983.1 89900512 3964022 1862054..1862419 1 NC_007908.1 Rieske (2Fe-2S) protein 1862419 3964022 Rfer_1723 Rhodoferax ferrireducens T118 Rieske (2Fe-2S) protein YP_522983.1 1862054 D 338969 CDS YP_522984.1 89900513 3964023 1862420..1863490 1 NC_007908.1 peptidase S49 1863490 3964023 Rfer_1724 Rhodoferax ferrireducens T118 peptidase S49 YP_522984.1 1862420 D 338969 CDS YP_522985.1 89900514 3964024 complement(1863506..1864294) 1 NC_007908.1 uroporphyrin-III C/tetrapyrrole methyltransferase 1864294 3964024 Rfer_1725 Rhodoferax ferrireducens T118 uroporphyrin-III C/tetrapyrrole methyltransferase YP_522985.1 1863506 R 338969 CDS YP_522986.1 89900515 3964025 complement(1864291..1864890) 1 NC_007908.1 maf protein 1864890 3964025 Rfer_1726 Rhodoferax ferrireducens T118 maf protein YP_522986.1 1864291 R 338969 CDS YP_522987.1 89900516 3964026 1864916..1865464 1 NC_007908.1 hypothetical protein 1865464 3964026 Rfer_1727 Rhodoferax ferrireducens T118 hypothetical protein YP_522987.1 1864916 D 338969 CDS YP_522988.1 89900517 3964027 1865573..1865755 1 NC_007908.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1865755 rpmF 3964027 rpmF Rhodoferax ferrireducens T118 50S ribosomal protein L32 YP_522988.1 1865573 D 338969 CDS YP_522989.1 89900518 3964028 1865863..1866912 1 NC_007908.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1866912 3964028 Rfer_1729 Rhodoferax ferrireducens T118 putative glycerol-3-phosphate acyltransferase PlsX YP_522989.1 1865863 D 338969 CDS YP_522990.1 89900519 3964029 1866916..1867893 1 NC_007908.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1867893 3964029 Rfer_1730 Rhodoferax ferrireducens T118 3-oxoacyl-(acyl carrier protein) synthase III YP_522990.1 1866916 D 338969 CDS YP_522991.1 89900520 3964030 1867956..1868915 1 NC_007908.1 malonyl CoA-acyl carrier protein transacylase 1868915 3964030 Rfer_1731 Rhodoferax ferrireducens T118 malonyl CoA-acyl carrier protein transacylase YP_522991.1 1867956 D 338969 CDS YP_522992.1 89900521 3964031 1868912..1869658 1 NC_007908.1 3-oxoacyl-(acyl-carrier-protein) reductase 1869658 3964031 Rfer_1732 Rhodoferax ferrireducens T118 3-oxoacyl-(acyl-carrier-protein) reductase YP_522992.1 1868912 D 338969 CDS YP_522993.1 89900522 3964032 1869756..1869995 1 NC_007908.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1869995 acpP 3964032 acpP Rhodoferax ferrireducens T118 acyl carrier protein YP_522993.1 1869756 D 338969 CDS YP_522994.1 89900523 3964033 1870133..1871380 1 NC_007908.1 beta-ketoacyl synthase 1871380 3964033 Rfer_1734 Rhodoferax ferrireducens T118 beta-ketoacyl synthase YP_522994.1 1870133 D 338969 CDS YP_522995.1 89900524 3964034 1871384..1871896 1 NC_007908.1 hypothetical protein 1871896 3964034 Rfer_1735 Rhodoferax ferrireducens T118 hypothetical protein YP_522995.1 1871384 D 338969 CDS YP_522996.1 89900525 3964035 1871901..1872548 1 NC_007908.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1872548 3964035 Rfer_1736 Rhodoferax ferrireducens T118 RNA polymerase sigma factor RpoE YP_522996.1 1871901 D 338969 CDS YP_522997.1 89900526 3964036 1872584..1873228 1 NC_007908.1 anti sigma-E protein RseA 1873228 3964036 Rfer_1737 Rhodoferax ferrireducens T118 anti sigma-E protein RseA YP_522997.1 1872584 D 338969 CDS YP_522998.1 89900527 3962439 1873237..1874241 1 NC_007908.1 putative sigma E regulatory protein, MucB/RseB 1874241 3962439 Rfer_1738 Rhodoferax ferrireducens T118 putative sigma E regulatory protein, MucB/RseB YP_522998.1 1873237 D 338969 CDS YP_522999.1 89900528 3962440 1874317..1875798 1 NC_007908.1 peptidase S1C, Do 1875798 3962440 Rfer_1739 Rhodoferax ferrireducens T118 peptidase S1C, Do YP_522999.1 1874317 D 338969 CDS YP_523000.1 89900529 3962441 1876263..1878074 1 NC_007908.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1878074 3962441 Rfer_1740 Rhodoferax ferrireducens T118 GTP-binding protein LepA YP_523000.1 1876263 D 338969 CDS YP_523001.1 89900530 3962442 1878074..1879039 1 NC_007908.1 peptidase S26A, signal peptidase I 1879039 3962442 Rfer_1741 Rhodoferax ferrireducens T118 peptidase S26A, signal peptidase I YP_523001.1 1878074 D 338969 CDS YP_523002.1 89900531 3962443 1879055..1879405 1 NC_007908.1 hypothetical protein 1879405 3962443 Rfer_1742 Rhodoferax ferrireducens T118 hypothetical protein YP_523002.1 1879055 D 338969 CDS YP_523003.1 89900532 3962444 1879429..1880115 1 NC_007908.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1880115 rnc 3962444 rnc Rhodoferax ferrireducens T118 ribonuclease III YP_523003.1 1879429 D 338969 CDS YP_523004.1 89900533 3962445 1880244..1881188 1 NC_007908.1 GTP-binding protein Era 1881188 3962445 Rfer_1744 Rhodoferax ferrireducens T118 GTP-binding protein Era YP_523004.1 1880244 D 338969 CDS YP_523005.1 89900534 3962446 1881352..1881954 1 NC_007908.1 PA-phosphatase-like phosphoesterase 1881954 3962446 Rfer_1745 Rhodoferax ferrireducens T118 PA-phosphatase-like phosphoesterase YP_523005.1 1881352 D 338969 CDS YP_523006.1 89900535 3962447 complement(1882251..1882997) 1 NC_007908.1 PE-PGRS family protein 1882997 3962447 Rfer_1746 Rhodoferax ferrireducens T118 PE-PGRS family protein YP_523006.1 1882251 R 338969 CDS YP_523007.1 89900536 3962448 1883248..1884135 1 NC_007908.1 hypothetical protein 1884135 3962448 Rfer_1747 Rhodoferax ferrireducens T118 hypothetical protein YP_523007.1 1883248 D 338969 CDS YP_523008.1 89900537 3962449 1884119..1885360 1 NC_007908.1 hypothetical protein 1885360 3962449 Rfer_1748 Rhodoferax ferrireducens T118 hypothetical protein YP_523008.1 1884119 D 338969 CDS YP_523009.1 89900538 3962450 1885464..1885796 1 NC_007908.1 RelB antitoxin 1885796 3962450 Rfer_1749 Rhodoferax ferrireducens T118 RelB antitoxin YP_523009.1 1885464 D 338969 CDS YP_523010.1 89900539 3962451 1885783..1886103 1 NC_007908.1 hypothetical protein 1886103 3962451 Rfer_1750 Rhodoferax ferrireducens T118 hypothetical protein YP_523010.1 1885783 D 338969 CDS YP_523011.1 89900540 3962452 1886103..1886858 1 NC_007908.1 DNA repair protein RecO 1886858 3962452 Rfer_1751 Rhodoferax ferrireducens T118 DNA repair protein RecO YP_523011.1 1886103 D 338969 CDS YP_523012.1 89900541 3962453 1886855..1887613 1 NC_007908.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1887613 3962453 Rfer_1752 Rhodoferax ferrireducens T118 pyridoxine 5'-phosphate synthase YP_523012.1 1886855 D 338969 CDS YP_523013.1 89900542 3962454 1887610..1888002 1 NC_007908.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1888002 acpS 3962454 acpS Rhodoferax ferrireducens T118 4'-phosphopantetheinyl transferase YP_523013.1 1887610 D 338969 CDS YP_523014.1 89900543 3962455 1888083..1889177 1 NC_007908.1 beta-N-acetylhexosaminidase 1889177 3962455 Rfer_1754 Rhodoferax ferrireducens T118 beta-N-acetylhexosaminidase YP_523014.1 1888083 D 338969 CDS YP_523015.1 89900544 3962456 complement(1889174..1889401) 1 NC_007908.1 hypothetical protein 1889401 3962456 Rfer_1755 Rhodoferax ferrireducens T118 hypothetical protein YP_523015.1 1889174 R 338969 CDS YP_523016.1 89900545 3962457 1889588..1890811 1 NC_007908.1 major facilitator transporter 1890811 3962457 Rfer_1756 Rhodoferax ferrireducens T118 major facilitator transporter YP_523016.1 1889588 D 338969 CDS YP_523017.1 89900546 3960848 1890867..1891229 1 NC_007908.1 translation initiation factor SUI1 1891229 3960848 Rfer_1757 Rhodoferax ferrireducens T118 translation initiation factor SUI1 YP_523017.1 1890867 D 338969 CDS YP_523018.1 89900547 3960849 1891232..1891444 1 NC_007908.1 hypothetical protein 1891444 3960849 Rfer_1758 Rhodoferax ferrireducens T118 hypothetical protein YP_523018.1 1891232 D 338969 CDS YP_523019.1 89900548 3960850 complement(1891456..1892559) 1 NC_007908.1 sulfate transport system permease 1 1892559 3960850 Rfer_1759 Rhodoferax ferrireducens T118 sulfate transport system permease 1 YP_523019.1 1891456 R 338969 CDS YP_523020.1 89900549 3960851 complement(1892942..1893808) 1 NC_007908.1 Sulfate ABC transporter permease CysW 1893808 3960851 Rfer_1760 Rhodoferax ferrireducens T118 Sulfate ABC transporter permease CysW YP_523020.1 1892942 R 338969 CDS YP_523021.1 89900550 3960852 complement(1893805..1894686) 1 NC_007908.1 Sulfate ABC transporter permease CysT 1894686 3960852 Rfer_1761 Rhodoferax ferrireducens T118 Sulfate ABC transporter permease CysT YP_523021.1 1893805 R 338969 CDS YP_523022.1 89900551 3960853 complement(1894748..1895746) 1 NC_007908.1 thiosulfate-binding protein 1895746 3960853 Rfer_1762 Rhodoferax ferrireducens T118 thiosulfate-binding protein YP_523022.1 1894748 R 338969 CDS YP_523023.1 89900552 3960854 complement(1895796..1896353) 1 NC_007908.1 hypothetical protein 1896353 3960854 Rfer_1763 Rhodoferax ferrireducens T118 hypothetical protein YP_523023.1 1895796 R 338969 CDS YP_523024.1 89900553 3960855 complement(1896558..1897265) 1 NC_007908.1 hypothetical protein 1897265 3960855 Rfer_1764 Rhodoferax ferrireducens T118 hypothetical protein YP_523024.1 1896558 R 338969 CDS YP_523025.1 89900554 3960856 complement(1897283..1898383) 1 NC_007908.1 NmrA-like protein 1898383 3960856 Rfer_1765 Rhodoferax ferrireducens T118 NmrA-like protein YP_523025.1 1897283 R 338969 CDS YP_523026.1 89900555 3960857 complement(1898448..1899038) 1 NC_007908.1 TetR family transcriptional regulator 1899038 3960857 Rfer_1766 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_523026.1 1898448 R 338969 CDS YP_523027.1 89900556 3960858 complement(1899429..1901579) 1 NC_007908.1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1901579 3960858 Rfer_1767 Rhodoferax ferrireducens T118 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523027.1 1899429 R 338969 CDS YP_523028.1 89900557 3960859 complement(1901576..1904677) 1 NC_007908.1 multi-sensor hybrid histidine kinase 1904677 3960859 Rfer_1768 Rhodoferax ferrireducens T118 multi-sensor hybrid histidine kinase YP_523028.1 1901576 R 338969 CDS YP_523029.1 89900558 3960860 1905200..1906057 1 NC_007908.1 hypothetical protein 1906057 3960860 Rfer_1769 Rhodoferax ferrireducens T118 hypothetical protein YP_523029.1 1905200 D 338969 CDS YP_523030.1 89900559 3960861 complement(1906073..1906867) 1 NC_007908.1 lipoprotein YaeC 1906867 3960861 Rfer_1770 Rhodoferax ferrireducens T118 lipoprotein YaeC YP_523030.1 1906073 R 338969 CDS YP_523031.1 89900560 3960862 complement(1906953..1907618) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1907618 3960862 Rfer_1771 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523031.1 1906953 R 338969 CDS YP_523032.1 89900561 3960863 complement(1907611..1908657) 1 NC_007908.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1908657 metN 3960863 metN Rhodoferax ferrireducens T118 DL-methionine transporter ATP-binding subunit YP_523032.1 1907611 R 338969 CDS YP_523033.1 89900562 3960864 complement(1908661..1910007) 1 NC_007908.1 putative nitrilotriacetate monooxygenase component A protein 1910007 3960864 Rfer_1773 Rhodoferax ferrireducens T118 putative nitrilotriacetate monooxygenase component A protein YP_523033.1 1908661 R 338969 CDS YP_523034.1 89900563 3960865 complement(1910034..1910249) 1 NC_007908.1 molybdenum-pterin-binding domain-containing protein 1910249 3960865 Rfer_1774 Rhodoferax ferrireducens T118 molybdenum-pterin-binding domain-containing protein YP_523034.1 1910034 R 338969 CDS YP_523035.1 89900564 3960866 complement(1910288..1911124) 1 NC_007908.1 ABC transporter-like protein 1911124 3960866 Rfer_1775 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523035.1 1910288 R 338969 CDS YP_523036.1 89900565 3960867 complement(1911185..1912069) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1912069 3960867 Rfer_1776 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523036.1 1911185 R 338969 CDS YP_523037.1 89900566 3963297 complement(1912101..1913243) 1 NC_007908.1 alkanesulfonate monooxygenase 1913243 3963297 Rfer_1777 Rhodoferax ferrireducens T118 alkanesulfonate monooxygenase YP_523037.1 1912101 R 338969 CDS YP_523038.1 89900567 3963298 complement(1913273..1914304) 1 NC_007908.1 aliphatic sulfonates ABC transporter substrate-binding protein 1914304 3963298 Rfer_1778 Rhodoferax ferrireducens T118 aliphatic sulfonates ABC transporter substrate-binding protein YP_523038.1 1913273 R 338969 CDS YP_523039.1 89900568 3963299 complement(1914325..1915287) 1 NC_007908.1 aliphatic sulfonates ABC transporter substrate-binding protein 1915287 3963299 Rfer_1779 Rhodoferax ferrireducens T118 aliphatic sulfonates ABC transporter substrate-binding protein YP_523039.1 1914325 R 338969 CDS YP_523040.1 89900569 3963300 complement(1915402..1915992) 1 NC_007908.1 NADPH-dependent FMN reductase 1915992 3963300 Rfer_1780 Rhodoferax ferrireducens T118 NADPH-dependent FMN reductase YP_523040.1 1915402 R 338969 CDS YP_523041.1 89900570 3963301 complement(1916043..1917077) 1 NC_007908.1 thiosulfate-binding protein 1917077 3963301 Rfer_1781 Rhodoferax ferrireducens T118 thiosulfate-binding protein YP_523041.1 1916043 R 338969 CDS YP_523042.1 89900571 3963302 complement(1917195..1918715) 1 NC_007908.1 hypothetical protein 1918715 3963302 Rfer_1782 Rhodoferax ferrireducens T118 hypothetical protein YP_523042.1 1917195 R 338969 CDS YP_523043.1 89900572 3963303 complement(1918743..1919312) 1 NC_007908.1 hypothetical protein 1919312 3963303 Rfer_1783 Rhodoferax ferrireducens T118 hypothetical protein YP_523043.1 1918743 R 338969 CDS YP_523044.1 89900573 3963304 complement(1919356..1920918) 1 NC_007908.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1920918 lysS 3963304 lysS Rhodoferax ferrireducens T118 lysyl-tRNA synthetase YP_523044.1 1919356 R 338969 CDS YP_523045.1 89900574 3963305 1921045..1921611 1 NC_007908.1 hypothetical protein 1921611 3963305 Rfer_1785 Rhodoferax ferrireducens T118 hypothetical protein YP_523045.1 1921045 D 338969 CDS YP_523046.1 89900575 3963306 complement(1922112..1922984) 1 NC_007908.1 acetyl-CoA carboxylase, carboxyl transferase subunit beta 1922984 3963306 Rfer_1786 Rhodoferax ferrireducens T118 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_523046.1 1922112 R 338969 CDS YP_523047.1 89900576 3963307 complement(1923117..1923938) 1 NC_007908.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1923938 trpA 3963307 trpA Rhodoferax ferrireducens T118 tryptophan synthase subunit alpha YP_523047.1 1923117 R 338969 CDS YP_523048.1 89900577 3963308 complement(1923935..1925242) 1 NC_007908.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1925242 3963308 Rfer_1788 Rhodoferax ferrireducens T118 tryptophan synthase subunit beta YP_523048.1 1923935 R 338969 CDS YP_523049.1 89900578 3963309 complement(1925235..1925969) 1 NC_007908.1 phosphoribosylanthranilate isomerase 1925969 3963309 Rfer_1789 Rhodoferax ferrireducens T118 phosphoribosylanthranilate isomerase YP_523049.1 1925235 R 338969 CDS YP_523050.1 89900579 3963310 complement(1925966..1926748) 1 NC_007908.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1926748 truA 3963310 truA Rhodoferax ferrireducens T118 tRNA pseudouridine synthase A YP_523050.1 1925966 R 338969 CDS YP_523051.1 89900580 3963311 complement(1926798..1929431) 1 NC_007908.1 peptidoglycan-binding LysM 1929431 3963311 Rfer_1791 Rhodoferax ferrireducens T118 peptidoglycan-binding LysM YP_523051.1 1926798 R 338969 CDS YP_523052.1 89900581 3963312 complement(1929673..1930812) 1 NC_007908.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1930812 3963312 Rfer_1792 Rhodoferax ferrireducens T118 aspartate-semialdehyde dehydrogenase YP_523052.1 1929673 R 338969 CDS YP_523053.1 89900582 3963313 complement(1931031..1932101) 1 NC_007908.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1932101 3963313 Rfer_1793 Rhodoferax ferrireducens T118 3-isopropylmalate dehydrogenase YP_523053.1 1931031 R 338969 CDS YP_523054.1 89900583 3963314 complement(1932136..1932786) 1 NC_007908.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1932786 leuD 3963314 leuD Rhodoferax ferrireducens T118 isopropylmalate isomerase small subunit YP_523054.1 1932136 R 338969 CDS YP_523055.1 89900584 3963315 complement(1932810..1934282) 1 NC_007908.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1934282 3963315 Rfer_1795 Rhodoferax ferrireducens T118 isopropylmalate isomerase large subunit YP_523055.1 1932810 R 338969 CDS YP_523056.1 89900585 3962193 complement(1934395..1935705) 1 NC_007908.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1935705 gltA 3962193 gltA Rhodoferax ferrireducens T118 type II citrate synthase YP_523056.1 1934395 R 338969 CDS YP_523057.1 89900586 3962194 complement(1935709..1936032) 1 NC_007908.1 hypothetical protein 1936032 3962194 Rfer_1797 Rhodoferax ferrireducens T118 hypothetical protein YP_523057.1 1935709 R 338969 CDS YP_523058.1 89900587 3962195 complement(1936039..1936743) 1 NC_007908.1 succinate dehydrogenase and fumarate reductase iron-sulfur protein 1936743 3962195 Rfer_1798 Rhodoferax ferrireducens T118 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_523058.1 1936039 R 338969 CDS YP_523059.1 89900588 3962196 complement(1936798..1938603) 1 NC_007908.1 succinate dehydrogenase, flavoprotein subunit 1938603 3962196 Rfer_1799 Rhodoferax ferrireducens T118 succinate dehydrogenase, flavoprotein subunit YP_523059.1 1936798 R 338969 CDS YP_523060.1 89900589 3962197 complement(1938696..1939061) 1 NC_007908.1 succinate dehydrogenase, cytochrome b subunit 1939061 3962197 Rfer_1800 Rhodoferax ferrireducens T118 succinate dehydrogenase, cytochrome b subunit YP_523060.1 1938696 R 338969 CDS YP_523061.1 89900590 3962198 complement(1939113..1939556) 1 NC_007908.1 succinate dehydrogenase, cytochrome b subunit 1939556 3962198 Rfer_1801 Rhodoferax ferrireducens T118 succinate dehydrogenase, cytochrome b subunit YP_523061.1 1939113 R 338969 CDS YP_523062.1 89900591 3962199 complement(1939762..1940556) 1 NC_007908.1 GntR family transcriptional regulator 1940556 3962199 Rfer_1802 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_523062.1 1939762 R 338969 CDS YP_523063.1 89900592 3962200 1940692..1941678 1 NC_007908.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1941678 3962200 Rfer_1803 Rhodoferax ferrireducens T118 malate dehydrogenase YP_523063.1 1940692 D 338969 CDS YP_523064.1 89900593 3962201 1941784..1942848 1 NC_007908.1 putative citrate lyase subunit beta 1942848 3962201 Rfer_1804 Rhodoferax ferrireducens T118 putative citrate lyase subunit beta YP_523064.1 1941784 D 338969 CDS YP_523065.1 89900594 3962202 1942839..1943540 1 NC_007908.1 hypothetical protein 1943540 3962202 Rfer_1805 Rhodoferax ferrireducens T118 hypothetical protein YP_523065.1 1942839 D 338969 CDS YP_523066.1 89900595 3962203 1943608..1946205 1 NC_007908.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1946205 3962203 Rfer_1806 Rhodoferax ferrireducens T118 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_523066.1 1943608 D 338969 CDS YP_523067.1 89900596 3962204 complement(1946279..1946740) 1 NC_007908.1 integral membrane protein-like protein 1946740 3962204 Rfer_1807 Rhodoferax ferrireducens T118 integral membrane protein-like protein YP_523067.1 1946279 R 338969 CDS YP_523068.1 89900597 3962205 complement(1946902..1947186) 1 NC_007908.1 hypothetical protein 1947186 3962205 Rfer_1808 Rhodoferax ferrireducens T118 hypothetical protein YP_523068.1 1946902 R 338969 CDS YP_523069.1 89900598 3962206 complement(1947286..1947477) 1 NC_007908.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 1947477 3962206 Rfer_1809 Rhodoferax ferrireducens T118 4-oxalocrotonate tautomerase YP_523069.1 1947286 R 338969 CDS YP_523070.1 89900599 3962207 complement(1947515..1947937) 1 NC_007908.1 hypothetical protein 1947937 3962207 Rfer_1810 Rhodoferax ferrireducens T118 hypothetical protein YP_523070.1 1947515 R 338969 CDS YP_523071.1 89900600 3962208 complement(1947934..1948407) 1 NC_007908.1 hypothetical protein 1948407 3962208 Rfer_1811 Rhodoferax ferrireducens T118 hypothetical protein YP_523071.1 1947934 R 338969 CDS YP_523072.1 89900601 3962209 complement(1948432..1949118) 1 NC_007908.1 hypothetical protein 1949118 3962209 Rfer_1812 Rhodoferax ferrireducens T118 hypothetical protein YP_523072.1 1948432 R 338969 CDS YP_523073.1 89900602 3962210 1949232..1950320 1 NC_007908.1 NADH:flavin oxidoreductase/NADH oxidase 1950320 3962210 Rfer_1813 Rhodoferax ferrireducens T118 NADH:flavin oxidoreductase/NADH oxidase YP_523073.1 1949232 D 338969 CDS YP_523074.1 89900603 3962211 1950373..1950870 1 NC_007908.1 hypothetical protein 1950870 3962211 Rfer_1814 Rhodoferax ferrireducens T118 hypothetical protein YP_523074.1 1950373 D 338969 CDS YP_523075.1 89900604 3962212 1951021..1951620 1 NC_007908.1 hypothetical protein 1951620 3962212 Rfer_1815 Rhodoferax ferrireducens T118 hypothetical protein YP_523075.1 1951021 D 338969 CDS YP_523076.1 89900605 3961057 complement(1951636..1951896) 1 NC_007908.1 hypothetical protein 1951896 3961057 Rfer_1816 Rhodoferax ferrireducens T118 hypothetical protein YP_523076.1 1951636 R 338969 CDS YP_523077.1 89900606 3961058 complement(1951898..1952146) 1 NC_007908.1 hypothetical protein 1952146 3961058 Rfer_1817 Rhodoferax ferrireducens T118 hypothetical protein YP_523077.1 1951898 R 338969 CDS YP_523078.1 89900607 3961059 complement(1952201..1952683) 1 NC_007908.1 hypothetical protein 1952683 3961059 Rfer_1818 Rhodoferax ferrireducens T118 hypothetical protein YP_523078.1 1952201 R 338969 CDS YP_523079.1 89900608 3961060 complement(1952849..1953775) 1 NC_007908.1 restriction endonuclease 1953775 3961060 Rfer_1819 Rhodoferax ferrireducens T118 restriction endonuclease YP_523079.1 1952849 R 338969 CDS YP_523080.1 89900609 3961062 complement(1955225..1957177) 1 NC_007908.1 XRE family transcriptional regulator 1957177 3961062 Rfer_1821 Rhodoferax ferrireducens T118 XRE family transcriptional regulator YP_523080.1 1955225 R 338969 CDS YP_523081.1 89900610 3961063 complement(1957190..1958011) 1 NC_007908.1 DNA adenine methylase 1958011 3961063 Rfer_1822 Rhodoferax ferrireducens T118 DNA adenine methylase YP_523081.1 1957190 R 338969 CDS YP_523082.1 89900611 3961064 complement(1958399..1960261) 1 NC_007908.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1960261 3961064 Rfer_1823 Rhodoferax ferrireducens T118 glutaminyl-tRNA synthetase YP_523082.1 1958399 R 338969 CDS YP_523083.1 89900612 3961065 1960294..1961430 1 NC_007908.1 hypothetical protein 1961430 3961065 Rfer_1824 Rhodoferax ferrireducens T118 hypothetical protein YP_523083.1 1960294 D 338969 CDS YP_523084.1 89900613 3961066 complement(1961427..1964066) 1 NC_007908.1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1964066 3961066 Rfer_1825 Rhodoferax ferrireducens T118 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523084.1 1961427 R 338969 CDS YP_523085.1 89900614 3961067 complement(1964063..1964509) 1 NC_007908.1 response regulator receiver domain-containing protein 1964509 3961067 Rfer_1826 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_523085.1 1964063 R 338969 CDS YP_523086.1 89900615 3961068 complement(1964484..1965965) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 1965965 3961068 Rfer_1827 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_523086.1 1964484 R 338969 CDS YP_523087.1 89900616 3961069 complement(1966342..1967034) 1 NC_007908.1 peptidase S16, lon-like protein 1967034 3961069 Rfer_1828 Rhodoferax ferrireducens T118 peptidase S16, lon-like protein YP_523087.1 1966342 R 338969 CDS YP_523088.1 89900617 3961070 1967111..1967944 1 NC_007908.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1967944 3961070 Rfer_1829 Rhodoferax ferrireducens T118 undecaprenyl pyrophosphate phosphatase YP_523088.1 1967111 D 338969 CDS YP_523089.1 89900618 3961071 complement(1967972..1968784) 1 NC_007908.1 alpha/beta hydrolase 1968784 3961071 Rfer_1830 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_523089.1 1967972 R 338969 CDS YP_523090.1 89900619 3961072 complement(1968784..1969611) 1 NC_007908.1 hypothetical protein 1969611 3961072 Rfer_1831 Rhodoferax ferrireducens T118 hypothetical protein YP_523090.1 1968784 R 338969 CDS YP_523091.1 89900620 3961073 complement(1969677..1972325) 1 NC_007908.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1972325 3961073 Rfer_1832 Rhodoferax ferrireducens T118 DNA mismatch repair protein MutS YP_523091.1 1969677 R 338969 CDS YP_523092.1 89900621 3963010 complement(1972786..1973502) 1 NC_007908.1 ABC transporter-like protein 1973502 3963010 Rfer_1835 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523092.1 1972786 R 338969 CDS YP_523093.1 89900622 3963011 complement(1973520..1975466) 1 NC_007908.1 ABC transporter-like protein 1975466 3963011 Rfer_1836 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523093.1 1973520 R 338969 CDS YP_523094.1 89900623 3963012 complement(1975482..1976372) 1 NC_007908.1 inner-membrane translocator 1976372 3963012 Rfer_1837 Rhodoferax ferrireducens T118 inner-membrane translocator YP_523094.1 1975482 R 338969 CDS YP_523095.1 89900624 3963013 complement(1976472..1977671) 1 NC_007908.1 extracellular ligand-binding receptor 1977671 3963013 Rfer_1838 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_523095.1 1976472 R 338969 CDS YP_523096.1 89900625 3963014 complement(1977711..1978373) 1 NC_007908.1 GntR family transcriptional regulator 1978373 3963014 Rfer_1839 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_523096.1 1977711 R 338969 CDS YP_523097.1 89900626 3963015 1978549..1979565 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctP 1979565 3963015 Rfer_1840 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctP YP_523097.1 1978549 D 338969 CDS YP_523098.1 89900627 3963016 1979634..1980131 1 NC_007908.1 tripartite ATP-independent periplasmic transporter DctQ 1980131 3963016 Rfer_1841 Rhodoferax ferrireducens T118 tripartite ATP-independent periplasmic transporter DctQ YP_523098.1 1979634 D 338969 CDS YP_523099.1 89900628 3963017 1980128..1981477 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 1981477 3963017 Rfer_1842 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_523099.1 1980128 D 338969 CDS YP_523100.1 89900629 3963018 1981479..1983155 1 NC_007908.1 alpha subunit of malonate decarboxylase 1983155 3963018 Rfer_1843 Rhodoferax ferrireducens T118 alpha subunit of malonate decarboxylase YP_523100.1 1981479 D 338969 CDS YP_523101.1 89900630 3963019 1983173..1983505 1 NC_007908.1 malonate decarboxylase subunit delta 1983505 3963019 Rfer_1844 Rhodoferax ferrireducens T118 malonate decarboxylase subunit delta YP_523101.1 1983173 D 338969 CDS YP_523102.1 89900631 3963020 1983502..1984389 1 NC_007908.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 1984389 3963020 Rfer_1845 Rhodoferax ferrireducens T118 malonate decarboxylase subunit beta YP_523102.1 1983502 D 338969 CDS YP_523103.1 89900632 3963021 1984386..1985084 1 NC_007908.1 malonate decarboxylase subunit gamma 1985084 3963021 Rfer_1846 Rhodoferax ferrireducens T118 malonate decarboxylase subunit gamma YP_523103.1 1984386 D 338969 CDS YP_523104.1 89900633 3963022 1985113..1985808 1 NC_007908.1 malonate decarboxylase 1985808 3963022 Rfer_1847 Rhodoferax ferrireducens T118 malonate decarboxylase YP_523104.1 1985113 D 338969 CDS YP_523105.1 89900634 3963023 1985817..1986773 1 NC_007908.1 triphosphoribosyl-dephospho-CoA synthase 1986773 3963023 Rfer_1848 Rhodoferax ferrireducens T118 triphosphoribosyl-dephospho-CoA synthase YP_523105.1 1985817 D 338969 CDS YP_523106.1 89900635 3963024 1986770..1987693 1 NC_007908.1 (acyl-carrier protein) S-malonyltransferase 1987693 3963024 Rfer_1849 Rhodoferax ferrireducens T118 (acyl-carrier protein) S-malonyltransferase YP_523106.1 1986770 D 338969 CDS YP_523107.1 89900636 3963025 1987893..1991150 1 NC_007908.1 hypothetical protein 1991150 3963025 Rfer_1850 Rhodoferax ferrireducens T118 hypothetical protein YP_523107.1 1987893 D 338969 CDS YP_523108.1 89900637 3963026 1991172..1992380 1 NC_007908.1 hypothetical protein 1992380 3963026 Rfer_1851 Rhodoferax ferrireducens T118 hypothetical protein YP_523108.1 1991172 D 338969 CDS YP_523109.1 89900638 3963027 1992481..1993491 1 NC_007908.1 patatin 1993491 3963027 Rfer_1852 Rhodoferax ferrireducens T118 patatin YP_523109.1 1992481 D 338969 CDS YP_523110.1 89900639 3963028 complement(1993561..1995123) 1 NC_007908.1 hypothetical protein 1995123 3963028 Rfer_1853 Rhodoferax ferrireducens T118 hypothetical protein YP_523110.1 1993561 R 338969 CDS YP_523111.1 89900640 3963029 1995526..1996452 1 NC_007908.1 glycine betaine ABC transporter substrate-binding protein 1996452 3963029 Rfer_1854 Rhodoferax ferrireducens T118 glycine betaine ABC transporter substrate-binding protein YP_523111.1 1995526 D 338969 CDS YP_523112.1 89900641 3960829 1996497..1997675 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1997675 3960829 Rfer_1855 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523112.1 1996497 D 338969 CDS YP_523113.1 89900642 3960830 1997668..1998600 1 NC_007908.1 ABC transporter-like protein 1998600 3960830 Rfer_1856 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523113.1 1997668 D 338969 CDS YP_523114.1 89900643 3960831 1998597..1999367 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 1999367 3960831 Rfer_1857 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523114.1 1998597 D 338969 CDS YP_523115.1 89900644 3960832 complement(1999356..1999595) 1 NC_007908.1 hypothetical protein 1999595 3960832 Rfer_1858 Rhodoferax ferrireducens T118 hypothetical protein YP_523115.1 1999356 R 338969 CDS YP_523116.1 89900645 3960833 1999727..2000080 1 NC_007908.1 HesB/YadR/YfhF 2000080 3960833 Rfer_1859 Rhodoferax ferrireducens T118 HesB/YadR/YfhF YP_523116.1 1999727 D 338969 CDS YP_523117.1 89900646 3960834 2000077..2001513 1 NC_007908.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2001513 3960834 Rfer_1860 Rhodoferax ferrireducens T118 cysteine desulfurase activator complex subunit SufB YP_523117.1 2000077 D 338969 CDS YP_523118.1 89900647 3960835 2001510..2002301 1 NC_007908.1 FeS assembly ATPase SufC 2002301 3960835 Rfer_1861 Rhodoferax ferrireducens T118 FeS assembly ATPase SufC YP_523118.1 2001510 D 338969 CDS YP_523119.1 89900648 3960836 2002298..2003626 1 NC_007908.1 FeS assembly protein SufD 2003626 3960836 Rfer_1862 Rhodoferax ferrireducens T118 FeS assembly protein SufD YP_523119.1 2002298 D 338969 CDS YP_523120.1 89900649 3960837 2003623..2004873 1 NC_007908.1 SufS subfamily cysteine desulfurase 2004873 3960837 Rfer_1863 Rhodoferax ferrireducens T118 SufS subfamily cysteine desulfurase YP_523120.1 2003623 D 338969 CDS YP_523121.1 89900650 3960838 2004870..2005358 1 NC_007908.1 SUF system FeS assembly protein 2005358 3960838 Rfer_1864 Rhodoferax ferrireducens T118 SUF system FeS assembly protein YP_523121.1 2004870 D 338969 CDS YP_523122.1 89900651 3960839 2005389..2005949 1 NC_007908.1 nitrogen-fixing NifU-like protein 2005949 3960839 Rfer_1865 Rhodoferax ferrireducens T118 nitrogen-fixing NifU-like protein YP_523122.1 2005389 D 338969 CDS YP_523123.1 89900652 3960840 2005988..2006452 1 NC_007908.1 BadM/Rrf2 family transcriptional regulator 2006452 3960840 Rfer_1866 Rhodoferax ferrireducens T118 BadM/Rrf2 family transcriptional regulator YP_523123.1 2005988 D 338969 CDS YP_523124.1 89900653 3960841 2006503..2007744 1 NC_007908.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2007744 3960841 Rfer_1867 Rhodoferax ferrireducens T118 D-3-phosphoglycerate dehydrogenase YP_523124.1 2006503 D 338969 CDS YP_523125.1 89900654 3960842 2007772..2008002 1 NC_007908.1 hypothetical protein 2008002 3960842 Rfer_1868 Rhodoferax ferrireducens T118 hypothetical protein YP_523125.1 2007772 D 338969 CDS YP_523126.1 89900655 3960843 complement(2008018..2008713) 1 NC_007908.1 two component LuxR family transcriptional regulator 2008713 3960843 Rfer_1869 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_523126.1 2008018 R 338969 CDS YP_523127.1 89900656 3960844 complement(2008720..2010630) 1 NC_007908.1 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ 2010630 3960844 Rfer_1870 Rhodoferax ferrireducens T118 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ YP_523127.1 2008720 R 338969 CDS YP_523128.1 89900657 3960845 complement(2010659..2011846) 1 NC_007908.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2011846 3960845 Rfer_1871 Rhodoferax ferrireducens T118 beta-ketothiolase YP_523128.1 2010659 R 338969 CDS YP_523129.1 89900658 3960846 2012077..2012496 1 NC_007908.1 response regulator receiver domain-containing protein 2012496 3960846 Rfer_1872 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_523129.1 2012077 D 338969 CDS YP_523130.1 89900659 3960847 complement(2012505..2013164) 1 NC_007908.1 two component LuxR family transcriptional regulator 2013164 3960847 Rfer_1873 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_523130.1 2012505 R 338969 CDS YP_523131.1 89900660 3962252 2013194..2014075 1 NC_007908.1 histidine kinase 2014075 3962252 Rfer_1874 Rhodoferax ferrireducens T118 histidine kinase YP_523131.1 2013194 D 338969 CDS YP_523132.1 89900661 3962253 2014272..2014436 1 NC_007908.1 hypothetical protein 2014436 3962253 Rfer_1875 Rhodoferax ferrireducens T118 hypothetical protein YP_523132.1 2014272 D 338969 CDS YP_523133.1 89900662 3962254 2014532..2014876 1 NC_007908.1 hypothetical protein 2014876 3962254 Rfer_1876 Rhodoferax ferrireducens T118 hypothetical protein YP_523133.1 2014532 D 338969 CDS YP_523134.1 89900663 3962255 2015002..2015385 1 NC_007908.1 hypothetical protein 2015385 3962255 Rfer_1877 Rhodoferax ferrireducens T118 hypothetical protein YP_523134.1 2015002 D 338969 CDS YP_523135.1 89900664 3962256 2015382..2015915 1 NC_007908.1 hypothetical protein 2015915 3962256 Rfer_1878 Rhodoferax ferrireducens T118 hypothetical protein YP_523135.1 2015382 D 338969 CDS YP_523136.1 89900665 3962257 complement(2015950..2016108) 1 NC_007908.1 hypothetical protein 2016108 3962257 Rfer_1879 Rhodoferax ferrireducens T118 hypothetical protein YP_523136.1 2015950 R 338969 CDS YP_523137.1 89900666 3962258 complement(2016141..2016380) 1 NC_007908.1 hypothetical protein 2016380 3962258 Rfer_1880 Rhodoferax ferrireducens T118 hypothetical protein YP_523137.1 2016141 R 338969 CDS YP_523138.1 89900667 3962259 2016716..2018296 1 NC_007908.1 Ig-like protein, group 2 2018296 3962259 Rfer_1881 Rhodoferax ferrireducens T118 Ig-like protein, group 2 YP_523138.1 2016716 D 338969 CDS YP_523139.1 89900668 3962260 2018400..2019563 1 NC_007908.1 OmpA/MotB 2019563 3962260 Rfer_1882 Rhodoferax ferrireducens T118 OmpA/MotB YP_523139.1 2018400 D 338969 CDS YP_523140.1 89900669 3962261 complement(2019779..2020288) 1 NC_007908.1 BadM/Rrf2 family transcriptional regulator 2020288 3962261 Rfer_1883 Rhodoferax ferrireducens T118 BadM/Rrf2 family transcriptional regulator YP_523140.1 2019779 R 338969 CDS YP_523141.1 89900670 3962262 2020394..2021599 1 NC_007908.1 NnrS 2021599 3962262 Rfer_1884 Rhodoferax ferrireducens T118 NnrS YP_523141.1 2020394 D 338969 CDS YP_523142.1 89900671 3962263 2021630..2022013 1 NC_007908.1 invasion gene expression up-regulator, SirB 2022013 3962263 Rfer_1885 Rhodoferax ferrireducens T118 invasion gene expression up-regulator, SirB YP_523142.1 2021630 D 338969 CDS YP_523143.1 89900672 3962264 2022567..2024891 1 NC_007908.1 putative nitric oxide reductase (subunit B) transmembrane protein 2024891 3962264 Rfer_1886 Rhodoferax ferrireducens T118 putative nitric oxide reductase (subunit B) transmembrane protein YP_523143.1 2022567 D 338969 CDS YP_523144.1 89900673 3962265 complement(2024915..2025898) 1 NC_007908.1 diguanylate cyclase 2025898 3962265 Rfer_1887 Rhodoferax ferrireducens T118 diguanylate cyclase YP_523144.1 2024915 R 338969 CDS YP_523145.1 89900674 3962266 complement(2025912..2026520) 1 NC_007908.1 CheC, inhibitor of MCP methylation 2026520 3962266 Rfer_1888 Rhodoferax ferrireducens T118 CheC, inhibitor of MCP methylation YP_523145.1 2025912 R 338969 CDS YP_523146.1 89900675 3962267 complement(2026526..2026987) 1 NC_007908.1 response regulator receiver domain-containing protein 2026987 3962267 Rfer_1889 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_523146.1 2026526 R 338969 CDS YP_523147.1 89900676 3962268 complement(2026993..2027805) 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2027805 3962268 Rfer_1890 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_523147.1 2026993 R 338969 CDS YP_523148.1 89900677 3962269 complement(2027833..2030331) 1 NC_007908.1 NADH:flavin oxidoreductase/NADH oxidase 2030331 3962269 Rfer_1891 Rhodoferax ferrireducens T118 NADH:flavin oxidoreductase/NADH oxidase YP_523148.1 2027833 R 338969 CDS YP_523149.1 89900678 3962270 2030530..2031060 1 NC_007908.1 PadR-like protein family transcriptional regulator 2031060 3962270 Rfer_1892 Rhodoferax ferrireducens T118 PadR-like protein family transcriptional regulator YP_523149.1 2030530 D 338969 CDS YP_523150.1 89900679 3962271 2032391..2032990 1 NC_007908.1 hypothetical protein 2032990 3962271 Rfer_1893 Rhodoferax ferrireducens T118 hypothetical protein YP_523150.1 2032391 D 338969 CDS YP_523151.1 89900680 3963223 complement(2033035..2034222) 1 NC_007908.1 major facilitator transporter 2034222 3963223 Rfer_1894 Rhodoferax ferrireducens T118 major facilitator transporter YP_523151.1 2033035 R 338969 CDS YP_523152.1 89900681 3963224 complement(2034268..2035176) 1 NC_007908.1 pseudouridine synthase 2035176 3963224 Rfer_1895 Rhodoferax ferrireducens T118 pseudouridine synthase YP_523152.1 2034268 R 338969 CDS YP_523153.1 89900682 3963225 complement(2035163..2035900) 1 NC_007908.1 hypothetical protein 2035900 3963225 Rfer_1896 Rhodoferax ferrireducens T118 hypothetical protein YP_523153.1 2035163 R 338969 CDS YP_523154.1 89900683 3963226 complement(2036027..2039293) 1 NC_007908.1 diguanylate cyclase/phosphodiesterase 2039293 3963226 Rfer_1897 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_523154.1 2036027 R 338969 CDS YP_523155.1 89900684 3963227 complement(2039346..2039540) 1 NC_007908.1 hypothetical protein 2039540 3963227 Rfer_1898 Rhodoferax ferrireducens T118 hypothetical protein YP_523155.1 2039346 R 338969 CDS YP_523156.1 89900685 3963228 complement(2039728..2040957) 1 NC_007908.1 ROK 2040957 3963228 Rfer_1899 Rhodoferax ferrireducens T118 ROK YP_523156.1 2039728 R 338969 CDS YP_523157.1 89900686 3963229 complement(2040954..2041406) 1 NC_007908.1 RbsD or FucU transport 2041406 3963229 Rfer_1900 Rhodoferax ferrireducens T118 RbsD or FucU transport YP_523157.1 2040954 R 338969 CDS YP_523158.1 89900687 3963230 complement(2041416..2042213) 1 NC_007908.1 ABC transporter-like protein 2042213 3963230 Rfer_1901 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523158.1 2041416 R 338969 CDS YP_523159.1 89900688 3963231 complement(2042213..2043172) 1 NC_007908.1 inner-membrane translocator 2043172 3963231 Rfer_1902 Rhodoferax ferrireducens T118 inner-membrane translocator YP_523159.1 2042213 R 338969 CDS YP_523160.1 89900689 3963232 complement(2043329..2044369) 1 NC_007908.1 periplasmic-binding protein/LacI transcriptional regulator 2044369 3963232 Rfer_1903 Rhodoferax ferrireducens T118 periplasmic-binding protein/LacI transcriptional regulator YP_523160.1 2043329 R 338969 CDS YP_523161.1 89900690 3963233 2044467..2045477 1 NC_007908.1 PfkB 2045477 3963233 Rfer_1904 Rhodoferax ferrireducens T118 PfkB YP_523161.1 2044467 D 338969 CDS YP_523162.1 89900691 3963234 complement(2045500..2046429) 1 NC_007908.1 glutamate--tRNA ligase 2046429 3963234 Rfer_1905 Rhodoferax ferrireducens T118 glutamate--tRNA ligase YP_523162.1 2045500 R 338969 CDS YP_523163.1 89900692 3963235 complement(2046444..2047499) 1 NC_007908.1 FAD dependent oxidoreductase 2047499 3963235 Rfer_1906 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_523163.1 2046444 R 338969 CDS YP_523164.1 89900693 3963236 complement(2047537..2048475) 1 NC_007908.1 LysR family transcriptional regulator 2048475 3963236 Rfer_1907 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_523164.1 2047537 R 338969 CDS YP_523165.1 89900694 3963237 complement(2048481..2050298) 1 NC_007908.1 PhoH-like protein 2050298 3963237 Rfer_1908 Rhodoferax ferrireducens T118 PhoH-like protein YP_523165.1 2048481 R 338969 CDS YP_523166.1 89900695 3963238 complement(2050413..2050931) 1 NC_007908.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 2050931 3963238 Rfer_1909 Rhodoferax ferrireducens T118 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_523166.1 2050413 R 338969 CDS YP_523167.1 89900696 3963239 complement(2051057..2051431) 1 NC_007908.1 hypothetical protein 2051431 3963239 Rfer_1910 Rhodoferax ferrireducens T118 hypothetical protein YP_523167.1 2051057 R 338969 CDS YP_523168.1 89900697 3963240 2051487..2052767 1 NC_007908.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2052767 3963240 Rfer_1911 Rhodoferax ferrireducens T118 aminotransferase AlaT YP_523168.1 2051487 D 338969 CDS YP_523169.1 89900698 3963241 2052838..2054196 1 NC_007908.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2054196 3963241 Rfer_1912 Rhodoferax ferrireducens T118 homoserine dehydrogenase YP_523169.1 2052838 D 338969 CDS YP_523170.1 89900699 3960751 2054196..2055623 1 NC_007908.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2055623 3960751 Rfer_1913 Rhodoferax ferrireducens T118 threonine synthase YP_523170.1 2054196 D 338969 CDS YP_523171.1 89900700 3960752 2055620..2056153 1 NC_007908.1 molybdopterin-guanine dinucleotide biosynthesis protein B 2056153 3960752 Rfer_1914 Rhodoferax ferrireducens T118 molybdopterin-guanine dinucleotide biosynthesis protein B YP_523171.1 2055620 D 338969 CDS YP_523172.1 89900701 3960753 2056150..2057436 1 NC_007908.1 MoeA-like proteindomain-containing protein 2057436 3960753 Rfer_1915 Rhodoferax ferrireducens T118 MoeA-like proteindomain-containing protein YP_523172.1 2056150 D 338969 CDS YP_523173.1 89900702 3960754 2057433..2057684 1 NC_007908.1 molybdopterin converting factor subunit 1 2057684 3960754 Rfer_1916 Rhodoferax ferrireducens T118 molybdopterin converting factor subunit 1 YP_523173.1 2057433 D 338969 CDS YP_523174.1 89900703 3960755 2058052..2058543 1 NC_007908.1 molybdopterin biosynthesis MoaE 2058543 3960755 Rfer_1917 Rhodoferax ferrireducens T118 molybdopterin biosynthesis MoaE YP_523174.1 2058052 D 338969 CDS YP_523175.1 89900704 3960756 complement(2058540..2059106) 1 NC_007908.1 hypothetical protein 2059106 3960756 Rfer_1918 Rhodoferax ferrireducens T118 hypothetical protein YP_523175.1 2058540 R 338969 CDS YP_523176.1 89900705 3960757 2059202..2061814 1 NC_007908.1 ATPase 2061814 3960757 Rfer_1919 Rhodoferax ferrireducens T118 ATPase YP_523176.1 2059202 D 338969 CDS YP_523177.1 89900706 3960758 complement(2061886..2062437) 1 NC_007908.1 hypothetical protein 2062437 3960758 Rfer_1920 Rhodoferax ferrireducens T118 hypothetical protein YP_523177.1 2061886 R 338969 CDS YP_523178.1 89900707 3960759 complement(2062504..2064198) 1 NC_007908.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2064198 3960759 Rfer_1921 Rhodoferax ferrireducens T118 dihydroxy-acid dehydratase YP_523178.1 2062504 R 338969 CDS YP_523179.1 89900708 3960760 2064303..2065271 1 NC_007908.1 LysR family transcriptional regulator 2065271 3960760 Rfer_1922 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_523179.1 2064303 D 338969 CDS YP_523180.1 89900709 3960761 2065317..2066144 1 NC_007908.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2066144 3960761 Rfer_1923 Rhodoferax ferrireducens T118 prolipoprotein diacylglyceryl transferase YP_523180.1 2065317 D 338969 CDS YP_523181.1 89900710 3960762 2066241..2067059 1 NC_007908.1 enoyl-CoA hydratase/isomerase 2067059 3960762 Rfer_1924 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_523181.1 2066241 D 338969 CDS YP_523182.1 89900711 3960763 2067139..2068641 1 NC_007908.1 catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 2068641 3960763 Rfer_1925 Rhodoferax ferrireducens T118 malonyl-CoA synthase YP_523182.1 2067139 D 338969 CDS YP_523183.1 89900712 3960764 complement(2068633..2069076) 1 NC_007908.1 hypothetical protein 2069076 3960764 Rfer_1926 Rhodoferax ferrireducens T118 hypothetical protein YP_523183.1 2068633 R 338969 CDS YP_523184.1 89900713 3960765 2069182..2071569 1 NC_007908.1 heavy metal translocating P-type ATPase 2071569 3960765 Rfer_1927 Rhodoferax ferrireducens T118 heavy metal translocating P-type ATPase YP_523184.1 2069182 D 338969 CDS YP_523185.1 89900714 3960766 2071728..2073191 1 NC_007908.1 two component LuxR family transcriptional regulator 2073191 3960766 Rfer_1928 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_523185.1 2071728 D 338969 CDS YP_523186.1 89900715 3960767 2073603..2073767 1 NC_007908.1 cbb3-type cytochrome oxidase maturation protein 2073767 3960767 Rfer_1929 Rhodoferax ferrireducens T118 cbb3-type cytochrome oxidase maturation protein YP_523186.1 2073603 D 338969 CDS YP_523187.1 89900716 3960768 2073875..2075311 1 NC_007908.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2075311 3960768 Rfer_1930 Rhodoferax ferrireducens T118 cbb3-type cytochrome c oxidase subunit I YP_523187.1 2073875 D 338969 CDS YP_523188.1 89900717 3960769 2075325..2075951 1 NC_007908.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2075951 3960769 Rfer_1931 Rhodoferax ferrireducens T118 cbb3-type cytochrome c oxidase subunit II YP_523188.1 2075325 D 338969 CDS YP_523189.1 89900718 3960770 2075968..2076111 1 NC_007908.1 Cbb3-type cytochrome oxidase component 2076111 3960770 Rfer_1932 Rhodoferax ferrireducens T118 Cbb3-type cytochrome oxidase component YP_523189.1 2075968 D 338969 CDS YP_523190.1 89900719 3964115 2076141..2077058 1 NC_007908.1 cbb3-type cytochrome c oxidase subunit III 2077058 3964115 Rfer_1933 Rhodoferax ferrireducens T118 cbb3-type cytochrome c oxidase subunit III YP_523190.1 2076141 D 338969 CDS YP_523191.1 89900720 3964116 2077101..2078567 1 NC_007908.1 4Fe-4S ferredoxin 2078567 3964116 Rfer_1934 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_523191.1 2077101 D 338969 CDS YP_523192.1 89900721 3964117 2078577..2078864 1 NC_007908.1 hypothetical protein 2078864 3964117 Rfer_1935 Rhodoferax ferrireducens T118 hypothetical protein YP_523192.1 2078577 D 338969 CDS YP_523193.1 89900722 3964118 2078899..2079189 1 NC_007908.1 hypothetical protein 2079189 3964118 Rfer_1936 Rhodoferax ferrireducens T118 hypothetical protein YP_523193.1 2078899 D 338969 CDS YP_523194.1 89900723 3964119 complement(2079201..2079872) 1 NC_007908.1 Crp/FNR family transcriptional regulator 2079872 3964119 Rfer_1937 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_523194.1 2079201 R 338969 CDS YP_523195.1 89900724 3964120 2080070..2081467 1 NC_007908.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2081467 3964120 Rfer_1938 Rhodoferax ferrireducens T118 coproporphyrinogen III oxidase YP_523195.1 2080070 D 338969 CDS YP_523196.1 89900725 3964121 2081476..2082153 1 NC_007908.1 hypothetical protein 2082153 3964121 Rfer_1939 Rhodoferax ferrireducens T118 hypothetical protein YP_523196.1 2081476 D 338969 CDS YP_523197.1 89900726 3964122 complement(2082188..2083375) 1 NC_007908.1 secretion protein HlyD 2083375 3964122 Rfer_1940 Rhodoferax ferrireducens T118 secretion protein HlyD YP_523197.1 2082188 R 338969 CDS YP_523198.1 89900727 3964123 complement(2083392..2085755) 1 NC_007908.1 hypothetical protein 2085755 3964123 Rfer_1941 Rhodoferax ferrireducens T118 hypothetical protein YP_523198.1 2083392 R 338969 CDS YP_523199.1 89900728 3964124 complement(2085766..2086530) 1 NC_007908.1 ABC transporter-like protein 2086530 3964124 Rfer_1942 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523199.1 2085766 R 338969 CDS YP_523200.1 89900729 3964125 2086646..2087641 1 NC_007908.1 tRNA-dihydrouridine synthase A 2087641 3964125 Rfer_1943 Rhodoferax ferrireducens T118 tRNA-dihydrouridine synthase A YP_523200.1 2086646 D 338969 CDS YP_523201.1 89900730 3964127 complement(2088235..2089191) 1 NC_007908.1 twin-arginine translocation pathway signal protein 2089191 3964127 Rfer_1945 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_523201.1 2088235 R 338969 CDS YP_523202.1 89900731 3964128 2089331..2090593 1 NC_007908.1 major facilitator transporter 2090593 3964128 Rfer_1946 Rhodoferax ferrireducens T118 major facilitator transporter YP_523202.1 2089331 D 338969 CDS YP_523203.1 89900732 3964129 2090709..2091026 1 NC_007908.1 hypothetical protein 2091026 3964129 Rfer_1947 Rhodoferax ferrireducens T118 hypothetical protein YP_523203.1 2090709 D 338969 CDS YP_523204.1 89900733 3964130 2091229..2092485 1 NC_007908.1 molecular chaperone, Hsp70 class 2092485 3964130 Rfer_1948 Rhodoferax ferrireducens T118 molecular chaperone, Hsp70 class YP_523204.1 2091229 D 338969 CDS YP_523205.1 89900734 3964131 complement(2092623..2094251) 1 NC_007908.1 extracellular solute-binding protein 2094251 3964131 Rfer_1949 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_523205.1 2092623 R 338969 CDS YP_523206.1 89900735 3964132 complement(2094271..2095275) 1 NC_007908.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 2095275 dppF 3964132 dppF Rhodoferax ferrireducens T118 dipeptide transporter ATP-binding subunit YP_523206.1 2094271 R 338969 CDS YP_523207.1 89900736 3964133 complement(2095272..2096240) 1 NC_007908.1 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 2096240 3964133 Rfer_1951 Rhodoferax ferrireducens T118 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_523207.1 2095272 R 338969 CDS YP_523208.1 89900737 3963068 complement(2096264..2097172) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 2097172 3963068 Rfer_1952 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523208.1 2096264 R 338969 CDS YP_523209.1 89900738 3963069 complement(2097181..2098185) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 2098185 3963069 Rfer_1953 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523209.1 2097181 R 338969 CDS YP_523210.1 89900739 3963070 complement(2098280..2098714) 1 NC_007908.1 SWIB/MDM2 2098714 3963070 Rfer_1954 Rhodoferax ferrireducens T118 SWIB/MDM2 YP_523210.1 2098280 R 338969 CDS YP_523211.1 89900740 3963071 2098899..2099420 1 NC_007908.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2099420 3963071 Rfer_1955 Rhodoferax ferrireducens T118 ribonuclease activity regulator protein RraA YP_523211.1 2098899 D 338969 CDS YP_523212.1 89900741 3963072 complement(2099426..2100382) 1 NC_007908.1 hypothetical protein 2100382 3963072 Rfer_1956 Rhodoferax ferrireducens T118 hypothetical protein YP_523212.1 2099426 R 338969 CDS YP_523213.1 89900742 3963073 2100711..2101460 1 NC_007908.1 electron transfer flavoprotein subunit beta 2101460 3963073 Rfer_1957 Rhodoferax ferrireducens T118 electron transfer flavoprotein subunit beta YP_523213.1 2100711 D 338969 CDS YP_523214.1 89900743 3963074 2101490..2102422 1 NC_007908.1 electron transfer flavoprotein subunit alpha 2102422 3963074 Rfer_1958 Rhodoferax ferrireducens T118 electron transfer flavoprotein subunit alpha YP_523214.1 2101490 D 338969 CDS YP_523215.1 89900744 3963075 2102524..2104314 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 2104314 3963075 Rfer_1959 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_523215.1 2102524 D 338969 CDS YP_523216.1 89900745 3963076 2104415..2105380 1 NC_007908.1 2-nitropropane dioxygenase 2105380 3963076 Rfer_1960 Rhodoferax ferrireducens T118 2-nitropropane dioxygenase YP_523216.1 2104415 D 338969 CDS YP_523217.1 89900746 3963077 complement(2105436..2106395) 1 NC_007908.1 rhodanese-like protein 2106395 3963077 Rfer_1961 Rhodoferax ferrireducens T118 rhodanese-like protein YP_523217.1 2105436 R 338969 CDS YP_523218.1 89900747 3963078 complement(2106392..2106874) 1 NC_007908.1 glutathione-dependent formaldehyde-activating protein 2106874 3963078 Rfer_1962 Rhodoferax ferrireducens T118 glutathione-dependent formaldehyde-activating protein YP_523218.1 2106392 R 338969 CDS YP_523219.1 89900748 3963079 complement(2107038..2107739) 1 NC_007908.1 hypothetical protein 2107739 3963079 Rfer_1963 Rhodoferax ferrireducens T118 hypothetical protein YP_523219.1 2107038 R 338969 CDS YP_523220.1 89900749 3963080 complement(2107914..2110046) 1 NC_007908.1 putative dehydrogenase 2110046 3963080 Rfer_1964 Rhodoferax ferrireducens T118 putative dehydrogenase YP_523220.1 2107914 R 338969 CDS YP_523221.1 89900750 3963081 2110235..2111494 1 NC_007908.1 iron-containing alcohol dehydrogenase 2111494 3963081 Rfer_1965 Rhodoferax ferrireducens T118 iron-containing alcohol dehydrogenase YP_523221.1 2110235 D 338969 CDS YP_523222.1 89900751 3963082 2111626..2112126 1 NC_007908.1 hypothetical protein 2112126 3963082 Rfer_1966 Rhodoferax ferrireducens T118 hypothetical protein YP_523222.1 2111626 D 338969 CDS YP_523223.1 89900752 3963083 complement(2112188..2113552) 1 NC_007908.1 beta-lactamase-like protein 2113552 3963083 Rfer_1967 Rhodoferax ferrireducens T118 beta-lactamase-like protein YP_523223.1 2112188 R 338969 CDS YP_523224.1 89900753 3963084 complement(2113675..2114814) 1 NC_007908.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2114814 3963084 Rfer_1968 Rhodoferax ferrireducens T118 chaperone protein DnaJ YP_523224.1 2113675 R 338969 CDS YP_523225.1 89900754 3963085 complement(2114912..2116867) 1 NC_007908.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2116867 dnaK 3963085 dnaK Rhodoferax ferrireducens T118 molecular chaperone DnaK YP_523225.1 2114912 R 338969 CDS YP_523226.1 89900755 3963086 complement(2116953..2117516) 1 NC_007908.1 GrpE protein 2117516 3963086 Rfer_1970 Rhodoferax ferrireducens T118 GrpE protein YP_523226.1 2116953 R 338969 CDS YP_523227.1 89900756 3963087 complement(2117679..2118032) 1 NC_007908.1 FKBP-type peptidylprolyl isomerase 2118032 3963087 Rfer_1971 Rhodoferax ferrireducens T118 FKBP-type peptidylprolyl isomerase YP_523227.1 2117679 R 338969 CDS YP_523228.1 89900757 3964327 complement(2118128..2118439) 1 NC_007908.1 putative transcriptional regulator 2118439 3964327 Rfer_1972 Rhodoferax ferrireducens T118 putative transcriptional regulator YP_523228.1 2118128 R 338969 CDS YP_523229.1 89900758 3964328 2118716..2119003 1 NC_007908.1 putative orphan protein 2119003 3964328 Rfer_1973 Rhodoferax ferrireducens T118 putative orphan protein YP_523229.1 2118716 D 338969 CDS YP_523230.1 89900759 3964329 2119288..2119821 1 NC_007908.1 polyhydroxyalkanoate synthesis repressor PhaR 2119821 3964329 Rfer_1974 Rhodoferax ferrireducens T118 polyhydroxyalkanoate synthesis repressor PhaR YP_523230.1 2119288 D 338969 CDS YP_523231.1 89900760 3964330 2119856..2121250 1 NC_007908.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 2121250 rimO 3964330 rimO Rhodoferax ferrireducens T118 ribosomal protein S12 methylthiotransferase YP_523231.1 2119856 D 338969 CDS YP_523232.1 89900761 3964332 2121499..2123739 1 NC_007908.1 ribonuclease R 2123739 3964332 Rfer_1976 Rhodoferax ferrireducens T118 ribonuclease R YP_523232.1 2121499 D 338969 CDS YP_523233.1 89900762 3964333 2123776..2124531 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 2124531 3964333 Rfer_1977 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_523233.1 2123776 D 338969 CDS YP_523234.1 89900763 3964334 complement(2124591..2126252) 1 NC_007908.1 PAS/PAC sensor signal transduction histidine kinase 2126252 3964334 Rfer_1978 Rhodoferax ferrireducens T118 PAS/PAC sensor signal transduction histidine kinase YP_523234.1 2124591 R 338969 CDS YP_523235.1 89900764 3964335 complement(2126249..2127544) 1 NC_007908.1 metal dependent phosphohydrolase 2127544 3964335 Rfer_1979 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_523235.1 2126249 R 338969 CDS YP_523236.1 89900765 3964336 complement(2127664..2129013) 1 NC_007908.1 response regulator receiver modulated metal dependent phosphohydrolase 2129013 3964336 Rfer_1980 Rhodoferax ferrireducens T118 response regulator receiver modulated metal dependent phosphohydrolase YP_523236.1 2127664 R 338969 CDS YP_523237.1 89900766 3964337 complement(2129189..2130031) 1 NC_007908.1 metal dependent phosphohydrolase 2130031 3964337 Rfer_1981 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_523237.1 2129189 R 338969 CDS YP_523238.1 89900767 3964338 complement(2130144..2134211) 1 NC_007908.1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2134211 3964338 Rfer_1982 Rhodoferax ferrireducens T118 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523238.1 2130144 R 338969 CDS YP_523239.1 89900768 3964339 complement(2134593..2138654) 1 NC_007908.1 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2138654 3964339 Rfer_1983 Rhodoferax ferrireducens T118 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_523239.1 2134593 R 338969 CDS YP_523240.1 89900769 3964340 complement(2138826..2140289) 1 NC_007908.1 hypothetical protein 2140289 3964340 Rfer_1984 Rhodoferax ferrireducens T118 hypothetical protein YP_523240.1 2138826 R 338969 CDS YP_523241.1 89900770 3964341 complement(2140295..2141182) 1 NC_007908.1 beta-lactamase-like protein 2141182 3964341 Rfer_1985 Rhodoferax ferrireducens T118 beta-lactamase-like protein YP_523241.1 2140295 R 338969 CDS YP_523242.1 89900771 3964342 complement(2141192..2142034) 1 NC_007908.1 metal dependent phosphohydrolase 2142034 3964342 Rfer_1986 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_523242.1 2141192 R 338969 CDS YP_523243.1 89900772 3964343 complement(2142097..2143323) 1 NC_007908.1 D-amino-acid dehydrogenase 2143323 3964343 Rfer_1987 Rhodoferax ferrireducens T118 D-amino-acid dehydrogenase YP_523243.1 2142097 R 338969 CDS YP_523244.1 89900773 3964344 complement(2143437..2144846) 1 NC_007908.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2144846 3964344 Rfer_1988 Rhodoferax ferrireducens T118 amidase YP_523244.1 2143437 R 338969 CDS YP_523245.1 89900774 3962213 2144940..2145692 1 NC_007908.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2145692 rpsB 3962213 rpsB Rhodoferax ferrireducens T118 30S ribosomal protein S2 YP_523245.1 2144940 D 338969 CDS YP_523246.1 89900775 3962214 2145780..2146703 1 NC_007908.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2146703 tsf 3962214 tsf Rhodoferax ferrireducens T118 elongation factor Ts YP_523246.1 2145780 D 338969 CDS YP_523247.1 89900776 3962215 2146813..2147535 1 NC_007908.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2147535 pyrH 3962215 pyrH Rhodoferax ferrireducens T118 uridylate kinase YP_523247.1 2146813 D 338969 CDS YP_523248.1 89900777 3962216 2147596..2148156 1 NC_007908.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2148156 frr 3962216 frr Rhodoferax ferrireducens T118 ribosome recycling factor YP_523248.1 2147596 D 338969 CDS YP_523249.1 89900778 3962217 2148255..2149100 1 NC_007908.1 phosphatidate cytidylyltransferase 2149100 3962217 Rfer_1993 Rhodoferax ferrireducens T118 phosphatidate cytidylyltransferase YP_523249.1 2148255 D 338969 CDS YP_523250.1 89900779 3962218 2149109..2150323 1 NC_007908.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2150323 3962218 Rfer_1994 Rhodoferax ferrireducens T118 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_523250.1 2149109 D 338969 CDS YP_523251.1 89900780 3962219 2150342..2151703 1 NC_007908.1 peptidase M50 membrane-associated zinc metallopeptidase 2151703 3962219 Rfer_1995 Rhodoferax ferrireducens T118 peptidase M50 membrane-associated zinc metallopeptidase YP_523251.1 2150342 D 338969 CDS YP_523252.1 89900781 3962220 2151696..2154035 1 NC_007908.1 surface antigen (D15) 2154035 3962220 Rfer_1996 Rhodoferax ferrireducens T118 surface antigen (D15) YP_523252.1 2151696 D 338969 CDS YP_523253.1 89900782 3962221 2154035..2154559 1 NC_007908.1 outer membrane chaperone Skp 2154559 3962221 Rfer_1997 Rhodoferax ferrireducens T118 outer membrane chaperone Skp YP_523253.1 2154035 D 338969 CDS YP_523254.1 89900783 3962222 2154582..2155571 1 NC_007908.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2155571 lpxD 3962222 lpxD Rhodoferax ferrireducens T118 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_523254.1 2154582 D 338969 CDS YP_523255.1 89900784 3962223 2155663..2156115 1 NC_007908.1 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2156115 3962223 Rfer_1999 Rhodoferax ferrireducens T118 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_523255.1 2155663 D 338969 CDS YP_523256.1 89900785 3962224 2156126..2156920 1 NC_007908.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2156920 3962224 Rfer_2000 Rhodoferax ferrireducens T118 UDP-N-acetylglucosamine acyltransferase YP_523256.1 2156126 D 338969 CDS YP_523257.1 89900786 3962225 2156944..2158113 1 NC_007908.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 2158113 lpxB 3962225 lpxB Rhodoferax ferrireducens T118 lipid-A-disaccharide synthase YP_523257.1 2156944 D 338969 CDS YP_523258.1 89900787 3962226 2158121..2158744 1 NC_007908.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2158744 rnhB 3962226 rnhB Rhodoferax ferrireducens T118 ribonuclease HII YP_523258.1 2158121 D 338969 CDS YP_523259.1 89900788 3962227 2158741..2159535 1 NC_007908.1 tRNA/rRNA methyltransferase SpoU 2159535 3962227 Rfer_2003 Rhodoferax ferrireducens T118 tRNA/rRNA methyltransferase SpoU YP_523259.1 2158741 D 338969 CDS YP_523260.2 162289254 3962228 2159694..2160875 1 NC_007908.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2160875 3962228 Rfer_2004 Rhodoferax ferrireducens T118 carbamoyl phosphate synthase small subunit YP_523260.2 2159694 D 338969 CDS YP_523261.1 89900790 3962229 2160872..2161552 1 NC_007908.1 leucine export protein LeuE 2161552 3962229 Rfer_2005 Rhodoferax ferrireducens T118 leucine export protein LeuE YP_523261.1 2160872 D 338969 CDS YP_523262.1 89900791 3962230 2161639..2164935 1 NC_007908.1 carbamoyl-phosphate synthase large subunit 2164935 3962230 Rfer_2006 Rhodoferax ferrireducens T118 carbamoyl-phosphate synthase large subunit YP_523262.1 2161639 D 338969 CDS YP_523263.1 89900792 3962231 2165055..2165597 1 NC_007908.1 GreA/GreB family elongation factor 2165597 3962231 Rfer_2007 Rhodoferax ferrireducens T118 GreA/GreB family elongation factor YP_523263.1 2165055 D 338969 CDS YP_523264.1 89900793 3962232 2165602..2166012 1 NC_007908.1 hypothetical protein 2166012 3962232 Rfer_2008 Rhodoferax ferrireducens T118 hypothetical protein YP_523264.1 2165602 D 338969 CDS YP_523265.1 89900794 3961757 complement(2166067..2166540) 1 NC_007908.1 hypothetical protein 2166540 3961757 Rfer_2009 Rhodoferax ferrireducens T118 hypothetical protein YP_523265.1 2166067 R 338969 CDS YP_523266.1 89900795 3961758 2166569..2167243 1 NC_007908.1 ribosomal RNA methyltransferase RrmJ/FtsJ 2167243 3961758 Rfer_2010 Rhodoferax ferrireducens T118 ribosomal RNA methyltransferase RrmJ/FtsJ YP_523266.1 2166569 D 338969 CDS YP_523267.1 89900796 3961759 2167362..2169281 1 NC_007908.1 ATP-dependent metalloprotease FtsH 2169281 3961759 Rfer_2011 Rhodoferax ferrireducens T118 ATP-dependent metalloprotease FtsH YP_523267.1 2167362 D 338969 CDS YP_523268.1 89900797 3961760 2169355..2170233 1 NC_007908.1 dihydropteroate synthase 2170233 3961760 Rfer_2012 Rhodoferax ferrireducens T118 dihydropteroate synthase YP_523268.1 2169355 D 338969 CDS YP_523269.1 89900798 3961761 2170275..2171606 1 NC_007908.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2171606 glmM 3961761 glmM Rhodoferax ferrireducens T118 phosphoglucosamine mutase YP_523269.1 2170275 D 338969 CDS YP_523270.1 89900799 3961762 2171603..2172124 1 NC_007908.1 GCN5-like protein N-acetyltransferase 2172124 3961762 Rfer_2014 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_523270.1 2171603 D 338969 CDS YP_523271.1 89900800 3961763 2172208..2172540 1 NC_007908.1 hypothetical protein 2172540 3961763 Rfer_2015 Rhodoferax ferrireducens T118 hypothetical protein YP_523271.1 2172208 D 338969 CDS YP_523272.1 89900801 3961764 complement(2172542..2175166) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2175166 3961764 Rfer_2016 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523272.1 2172542 R 338969 CDS YP_523273.1 89900802 3961765 2175334..2177436 1 NC_007908.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2177436 3961765 Rfer_2017 Rhodoferax ferrireducens T118 polyphosphate kinase YP_523273.1 2175334 D 338969 CDS YP_523274.1 89900803 3961766 2177438..2177899 1 NC_007908.1 phosphohistidine phosphatase SixA 2177899 3961766 Rfer_2018 Rhodoferax ferrireducens T118 phosphohistidine phosphatase SixA YP_523274.1 2177438 D 338969 CDS YP_523275.1 89900804 3961767 complement(2177954..2178364) 1 NC_007908.1 hypothetical protein 2178364 3961767 Rfer_2019 Rhodoferax ferrireducens T118 hypothetical protein YP_523275.1 2177954 R 338969 CDS YP_523276.1 89900805 3961768 2178573..2180519 1 NC_007908.1 twin-arginine translocation pathway signal protein 2180519 3961768 Rfer_2020 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_523276.1 2178573 D 338969 CDS YP_523277.1 89900806 3961769 2180540..2181301 1 NC_007908.1 phospholipid/glycerol acyltransferase 2181301 3961769 Rfer_2021 Rhodoferax ferrireducens T118 phospholipid/glycerol acyltransferase YP_523277.1 2180540 D 338969 CDS YP_523278.1 89900807 3961770 complement(2181464..2181937) 1 NC_007908.1 AsnC family transcriptional regulator 2181937 3961770 Rfer_2022 Rhodoferax ferrireducens T118 AsnC family transcriptional regulator YP_523278.1 2181464 R 338969 CDS YP_523279.1 89900808 3961771 2182392..2182952 1 NC_007908.1 cytochrome B561 2182952 3961771 Rfer_2023 Rhodoferax ferrireducens T118 cytochrome B561 YP_523279.1 2182392 D 338969 CDS YP_523280.1 89900809 3961772 complement(2183066..2184565) 1 NC_007908.1 adenylate cyclase 2184565 3961772 Rfer_2024 Rhodoferax ferrireducens T118 adenylate cyclase YP_523280.1 2183066 R 338969 CDS YP_523281.1 89900810 3961773 2184823..2185944 1 NC_007908.1 putative carboxypeptidase 2185944 3961773 Rfer_2025 Rhodoferax ferrireducens T118 putative carboxypeptidase YP_523281.1 2184823 D 338969 CDS YP_523282.1 89900811 3961774 2186100..2187188 1 NC_007908.1 patatin 2187188 3961774 Rfer_2026 Rhodoferax ferrireducens T118 patatin YP_523282.1 2186100 D 338969 CDS YP_523283.1 89900812 3961775 complement(2187156..2187380) 1 NC_007908.1 hypothetical protein 2187380 3961775 Rfer_2027 Rhodoferax ferrireducens T118 hypothetical protein YP_523283.1 2187156 R 338969 CDS YP_523284.1 89900813 3963166 2187434..2188282 1 NC_007908.1 hypothetical protein 2188282 3963166 Rfer_2028 Rhodoferax ferrireducens T118 hypothetical protein YP_523284.1 2187434 D 338969 CDS YP_523285.1 89900814 3963167 2188291..2189880 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 2189880 3963167 Rfer_2029 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523285.1 2188291 D 338969 CDS YP_523286.1 89900815 3963168 2190042..2191838 1 NC_007908.1 diguanylate cyclase/phosphodiesterase 2191838 3963168 Rfer_2030 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_523286.1 2190042 D 338969 CDS YP_523287.1 89900816 3963169 complement(2191845..2192993) 1 NC_007908.1 twin-arginine translocation pathway signal protein 2192993 3963169 Rfer_2031 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_523287.1 2191845 R 338969 CDS YP_523288.1 89900817 3963170 complement(2193168..2194685) 1 NC_007908.1 Ppx/GppA phosphatase 2194685 3963170 Rfer_2032 Rhodoferax ferrireducens T118 Ppx/GppA phosphatase YP_523288.1 2193168 R 338969 CDS YP_523289.1 89900818 3963171 2195024..2197174 1 NC_007908.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2197174 dinG 3963171 dinG Rhodoferax ferrireducens T118 ATP-dependent DNA helicase DinG YP_523289.1 2195024 D 338969 CDS YP_523290.1 89900819 3963172 2197270..2197569 1 NC_007908.1 hypothetical protein 2197569 3963172 Rfer_2034 Rhodoferax ferrireducens T118 hypothetical protein YP_523290.1 2197270 D 338969 CDS YP_523291.1 89900820 3963173 complement(2198004..2198648) 1 NC_007908.1 hypothetical protein 2198648 3963173 Rfer_2035 Rhodoferax ferrireducens T118 hypothetical protein YP_523291.1 2198004 R 338969 CDS YP_523292.1 89900821 3963174 2198775..2200838 1 NC_007908.1 TonB-dependent receptor 2200838 3963174 Rfer_2036 Rhodoferax ferrireducens T118 TonB-dependent receptor YP_523292.1 2198775 D 338969 CDS YP_523293.1 89900822 3963175 2200854..2201786 1 NC_007908.1 hypothetical protein 2201786 3963175 Rfer_2037 Rhodoferax ferrireducens T118 hypothetical protein YP_523293.1 2200854 D 338969 CDS YP_523294.1 89900823 3963176 2201783..2203744 1 NC_007908.1 periplasmic sensor hybrid histidine kinase 2203744 3963176 Rfer_2038 Rhodoferax ferrireducens T118 periplasmic sensor hybrid histidine kinase YP_523294.1 2201783 D 338969 CDS YP_523295.1 89900824 3963177 complement(2203717..2204355) 1 NC_007908.1 two component LuxR family transcriptional regulator 2204355 3963177 Rfer_2039 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_523295.1 2203717 R 338969 CDS YP_523296.1 89900825 3963178 2204468..2208025 1 NC_007908.1 DNA polymerase III subunit alpha 2208025 3963178 Rfer_2040 Rhodoferax ferrireducens T118 DNA polymerase III subunit alpha YP_523296.1 2204468 D 338969 CDS YP_523297.1 89900826 3963179 complement(2208522..2210477) 1 NC_007908.1 ABC transporter-like protein 2210477 3963179 Rfer_2041 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523297.1 2208522 R 338969 CDS YP_523298.1 89900827 3963180 complement(2210474..2210986) 1 NC_007908.1 GCN5-like protein N-acetyltransferase 2210986 3963180 Rfer_2042 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_523298.1 2210474 R 338969 CDS YP_523299.1 89900828 3963181 complement(2210997..2211929) 1 NC_007908.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2211929 3963181 Rfer_2043 Rhodoferax ferrireducens T118 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_523299.1 2210997 R 338969 CDS YP_523300.1 89900829 3963182 complement(2211926..2213101) 1 NC_007908.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2213101 3963182 Rfer_2044 Rhodoferax ferrireducens T118 succinyl-diaminopimelate desuccinylase YP_523300.1 2211926 R 338969 CDS YP_523301.1 89900830 3963183 complement(2213121..2214308) 1 NC_007908.1 twitching motility protein 2214308 3963183 Rfer_2045 Rhodoferax ferrireducens T118 twitching motility protein YP_523301.1 2213121 R 338969 CDS YP_523302.1 89900831 3963184 complement(2214350..2215174) 1 NC_007908.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2215174 dapD 3963184 dapD Rhodoferax ferrireducens T118 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_523302.1 2214350 R 338969 CDS YP_523303.1 89900832 3963185 complement(2215210..2216439) 1 NC_007908.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 2216439 3963185 Rfer_2047 Rhodoferax ferrireducens T118 succinyldiaminopimelate transaminase YP_523303.1 2215210 R 338969 CDS YP_523304.1 89900833 3962095 complement(2216508..2216699) 1 NC_007908.1 hypothetical protein 2216699 3962095 Rfer_2048 Rhodoferax ferrireducens T118 hypothetical protein YP_523304.1 2216508 R 338969 CDS YP_523305.1 89900834 3962096 complement(2216794..2218239) 1 NC_007908.1 malonyl-CoA decarboxylase 2218239 3962096 Rfer_2049 Rhodoferax ferrireducens T118 malonyl-CoA decarboxylase YP_523305.1 2216794 R 338969 CDS YP_523306.1 89900835 3962097 2218559..2219584 1 NC_007908.1 AraC family transcriptional regulator 2219584 3962097 Rfer_2050 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_523306.1 2218559 D 338969 CDS YP_523307.1 89900836 3962098 complement(2219636..2220547) 1 NC_007908.1 periplasmic solute-binding protein 2220547 3962098 Rfer_2051 Rhodoferax ferrireducens T118 periplasmic solute-binding protein YP_523307.1 2219636 R 338969 CDS YP_523308.1 89900837 3962099 complement(2220574..2221473) 1 NC_007908.1 hypothetical protein 2221473 3962099 Rfer_2052 Rhodoferax ferrireducens T118 hypothetical protein YP_523308.1 2220574 R 338969 CDS YP_523309.1 89900838 3962100 complement(2221470..2222282) 1 NC_007908.1 ABC transporter-like protein 2222282 3962100 Rfer_2053 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523309.1 2221470 R 338969 CDS YP_523310.1 89900839 3962101 2222592..2223137 1 NC_007908.1 ferric uptake regulator family protein 2223137 3962101 Rfer_2054 Rhodoferax ferrireducens T118 ferric uptake regulator family protein YP_523310.1 2222592 D 338969 CDS YP_523311.1 89900840 3962102 2223282..2226386 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2226386 3962102 Rfer_2055 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523311.1 2223282 D 338969 CDS YP_523312.1 89900841 3962103 2226393..2227340 1 NC_007908.1 auxin efflux carrier 2227340 3962103 Rfer_2056 Rhodoferax ferrireducens T118 auxin efflux carrier YP_523312.1 2226393 D 338969 CDS YP_523313.1 89900842 3962104 complement(2227348..2228004) 1 NC_007908.1 lysine exporter protein LysE/YggA 2228004 3962104 Rfer_2057 Rhodoferax ferrireducens T118 lysine exporter protein LysE/YggA YP_523313.1 2227348 R 338969 CDS YP_523314.1 89900843 3962105 2228125..2229036 1 NC_007908.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2229036 3962105 Rfer_2058 Rhodoferax ferrireducens T118 chromosome replication initiation inhibitor protein YP_523314.1 2228125 D 338969 CDS YP_523315.1 89900844 3962106 complement(2229045..2229821) 1 NC_007908.1 pyridoxamine 5'-phosphate oxidase 2229821 3962106 Rfer_2059 Rhodoferax ferrireducens T118 pyridoxamine 5'-phosphate oxidase YP_523315.1 2229045 R 338969 CDS YP_523316.1 89900845 3962107 2230171..2232021 1 NC_007908.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2232021 3962107 Rfer_2060 Rhodoferax ferrireducens T118 phosphogluconate dehydratase YP_523316.1 2230171 D 338969 CDS YP_523317.1 89900846 3962108 2232053..2232688 1 NC_007908.1 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 2232688 3962108 Rfer_2061 Rhodoferax ferrireducens T118 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YP_523317.1 2232053 D 338969 CDS YP_523318.1 89900847 3962109 complement(2232731..2234134) 1 NC_007908.1 patatin 2234134 3962109 Rfer_2062 Rhodoferax ferrireducens T118 patatin YP_523318.1 2232731 R 338969 CDS YP_523319.1 89900848 3962110 complement(2234200..2234835) 1 NC_007908.1 toluene tolerance 2234835 3962110 Rfer_2063 Rhodoferax ferrireducens T118 toluene tolerance YP_523319.1 2234200 R 338969 CDS YP_523320.1 89900849 3962111 complement(2234832..2236331) 1 NC_007908.1 RND efflux system outer membrane lipoprotein NodT 2236331 3962111 Rfer_2064 Rhodoferax ferrireducens T118 RND efflux system outer membrane lipoprotein NodT YP_523320.1 2234832 R 338969 CDS YP_523321.1 89900850 3962112 complement(2236324..2239482) 1 NC_007908.1 hydrophobe/amphiphile efflux-1 HAE1 protein 2239482 3962112 Rfer_2065 Rhodoferax ferrireducens T118 hydrophobe/amphiphile efflux-1 HAE1 protein YP_523321.1 2236324 R 338969 CDS YP_523322.1 89900851 3962113 complement(2239495..2240781) 1 NC_007908.1 secretion protein HlyD 2240781 3962113 Rfer_2066 Rhodoferax ferrireducens T118 secretion protein HlyD YP_523322.1 2239495 R 338969 CDS YP_523323.1 89900852 3961018 2240926..2241576 1 NC_007908.1 TetR family transcriptional regulator 2241576 3961018 Rfer_2067 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_523323.1 2240926 D 338969 CDS YP_523324.1 89900853 3961019 2241691..2242767 1 NC_007908.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 2242767 3961019 Rfer_2068 Rhodoferax ferrireducens T118 putative DNA-binding/iron metalloprotein/AP endonuclease YP_523324.1 2241691 D 338969 CDS YP_523325.1 89900854 3961020 complement(2242843..2243613) 1 NC_007908.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 2243613 3961020 Rfer_2069 Rhodoferax ferrireducens T118 3-hydroxybutyrate dehydrogenase YP_523325.1 2242843 R 338969 CDS YP_523326.1 89900855 3961021 2243747..2244646 1 NC_007908.1 alpha/beta hydrolase 2244646 3961021 Rfer_2070 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_523326.1 2243747 D 338969 CDS YP_523327.1 89900856 3961022 2244661..2246916 1 NC_007908.1 (p)ppGpp synthetase I SpoT/RelA 2246916 3961022 Rfer_2071 Rhodoferax ferrireducens T118 (p)ppGpp synthetase I SpoT/RelA YP_523327.1 2244661 D 338969 CDS YP_523328.1 89900857 3961023 2246995..2248452 1 NC_007908.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2248452 sbcB 3961023 sbcB Rhodoferax ferrireducens T118 exonuclease I YP_523328.1 2246995 D 338969 CDS YP_523329.1 89900858 3961024 complement(2248555..2249202) 1 NC_007908.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2249202 upp 3961024 upp Rhodoferax ferrireducens T118 uracil phosphoribosyltransferase YP_523329.1 2248555 R 338969 CDS YP_523330.1 89900859 3961025 complement(2249281..2250861) 1 NC_007908.1 hypothetical protein 2250861 3961025 Rfer_2074 Rhodoferax ferrireducens T118 hypothetical protein YP_523330.1 2249281 R 338969 CDS YP_523331.1 89900860 3961026 2250920..2251654 1 NC_007908.1 hypothetical protein 2251654 3961026 Rfer_2075 Rhodoferax ferrireducens T118 hypothetical protein YP_523331.1 2250920 D 338969 CDS YP_523332.1 89900861 3961027 2251651..2252967 1 NC_007908.1 phosphoribosylamine--glycine ligase 2252967 3961027 Rfer_2076 Rhodoferax ferrireducens T118 phosphoribosylamine--glycine ligase YP_523332.1 2251651 D 338969 CDS YP_523333.1 89900862 3961028 2252964..2253896 1 NC_007908.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2253896 3961028 Rfer_2077 Rhodoferax ferrireducens T118 coproporphyrinogen III oxidase YP_523333.1 2252964 D 338969 CDS YP_523334.1 89900863 3961029 2253898..2254494 1 NC_007908.1 putative nicotinate-nucleotide adenylyltransferase 2254494 3961029 Rfer_2078 Rhodoferax ferrireducens T118 putative nicotinate-nucleotide adenylyltransferase YP_523334.1 2253898 D 338969 CDS YP_523335.1 89900864 3961030 2254494..2255279 1 NC_007908.1 Iojap-like protein 2255279 3961030 Rfer_2079 Rhodoferax ferrireducens T118 Iojap-like protein YP_523335.1 2254494 D 338969 CDS YP_523336.1 89900865 3961031 2255289..2255756 1 NC_007908.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2255756 3961031 Rfer_2080 Rhodoferax ferrireducens T118 rRNA large subunit methyltransferase YP_523336.1 2255289 D 338969 CDS YP_523337.1 89900866 3961032 2255788..2256390 1 NC_007908.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2256390 3961032 Rfer_2081 Rhodoferax ferrireducens T118 Maf-like protein YP_523337.1 2255788 D 338969 CDS YP_523338.1 89900867 3961033 2256402..2257877 1 NC_007908.1 ribonuclease 2257877 3961033 Rfer_2082 Rhodoferax ferrireducens T118 ribonuclease YP_523338.1 2256402 D 338969 CDS YP_523339.1 89900868 3961034 2257967..2258899 1 NC_007908.1 hypothetical protein 2258899 3961034 Rfer_2083 Rhodoferax ferrireducens T118 hypothetical protein YP_523339.1 2257967 D 338969 CDS YP_523340.1 89900869 3961035 2259054..2259803 1 NC_007908.1 polysaccharide deacetylase 2259803 3961035 Rfer_2084 Rhodoferax ferrireducens T118 polysaccharide deacetylase YP_523340.1 2259054 D 338969 CDS YP_523341.1 89900870 3961036 2259845..2261050 1 NC_007908.1 group 1 glycosyl transferase 2261050 3961036 Rfer_2085 Rhodoferax ferrireducens T118 group 1 glycosyl transferase YP_523341.1 2259845 D 338969 CDS YP_523342.1 89900871 3961037 complement(2261122..2261946) 1 NC_007908.1 glycosyl transferase family protein 2261946 3961037 Rfer_2086 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_523342.1 2261122 R 338969 CDS YP_523343.1 89900872 3961253 complement(2262073..2262990) 1 NC_007908.1 lipopolysaccharide biosynthesis protein-like protein 2262990 3961253 Rfer_2087 Rhodoferax ferrireducens T118 lipopolysaccharide biosynthesis protein-like protein YP_523343.1 2262073 R 338969 CDS YP_523344.1 89900873 3961254 complement(2263003..2263599) 1 NC_007908.1 hypothetical protein 2263599 3961254 Rfer_2088 Rhodoferax ferrireducens T118 hypothetical protein YP_523344.1 2263003 R 338969 CDS YP_523345.1 89900874 3961256 complement(2263771..2265516) 1 NC_007908.1 Lipid A export ATP-binding/permease MsbA 2265516 3961256 Rfer_2090 Rhodoferax ferrireducens T118 Lipid A export ATP-binding/permease MsbA YP_523345.1 2263771 R 338969 CDS YP_523346.1 89900875 3961257 complement(2265513..2266295) 1 NC_007908.1 glycosyl transferase family protein 2266295 3961257 Rfer_2091 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_523346.1 2265513 R 338969 CDS YP_523347.1 89900876 3961258 2266481..2267758 1 NC_007908.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2267758 tolB 3961258 tolB Rhodoferax ferrireducens T118 translocation protein TolB YP_523347.1 2266481 D 338969 CDS YP_523348.1 89900877 3961259 2267778..2268311 1 NC_007908.1 OmpA/MotB 2268311 3961259 Rfer_2093 Rhodoferax ferrireducens T118 OmpA/MotB YP_523348.1 2267778 D 338969 CDS YP_523349.1 89900878 3961260 2268317..2269096 1 NC_007908.1 hypothetical protein 2269096 3961260 Rfer_2094 Rhodoferax ferrireducens T118 hypothetical protein YP_523349.1 2268317 D 338969 CDS YP_523350.1 89900879 3961261 2269128..2269871 1 NC_007908.1 UBA/THIF-type NAD/FAD-binding protein 2269871 3961261 Rfer_2095 Rhodoferax ferrireducens T118 UBA/THIF-type NAD/FAD-binding protein YP_523350.1 2269128 D 338969 CDS YP_523351.1 89900880 3961262 complement(2269888..2270967) 1 NC_007908.1 NlpBDapX lipoprotein 2270967 3961262 Rfer_2096 Rhodoferax ferrireducens T118 NlpBDapX lipoprotein YP_523351.1 2269888 R 338969 CDS YP_523352.1 89900881 3961263 complement(2271011..2271904) 1 NC_007908.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2271904 3961263 Rfer_2097 Rhodoferax ferrireducens T118 dihydrodipicolinate synthase YP_523352.1 2271011 R 338969 CDS YP_523353.1 89900882 3961264 complement(2271941..2272525) 1 NC_007908.1 hypothetical protein 2272525 3961264 Rfer_2098 Rhodoferax ferrireducens T118 hypothetical protein YP_523353.1 2271941 R 338969 CDS YP_523354.1 89900883 3961265 complement(2272672..2273892) 1 NC_007908.1 major facilitator transporter 2273892 3961265 Rfer_2099 Rhodoferax ferrireducens T118 major facilitator transporter YP_523354.1 2272672 R 338969 CDS YP_523355.1 89900884 3961266 complement(2274106..2274711) 1 NC_007908.1 NLP/P60 2274711 3961266 Rfer_2100 Rhodoferax ferrireducens T118 NLP/P60 YP_523355.1 2274106 R 338969 CDS YP_523356.1 89900885 3961267 complement(2274708..2276537) 1 NC_007908.1 FAD dependent oxidoreductase 2276537 3961267 Rfer_2101 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_523356.1 2274708 R 338969 CDS YP_523357.1 89900886 3961268 complement(2276550..2276822) 1 NC_007908.1 hypothetical protein 2276822 3961268 Rfer_2102 Rhodoferax ferrireducens T118 hypothetical protein YP_523357.1 2276550 R 338969 CDS YP_523358.1 89900887 3961269 2276950..2277183 1 NC_007908.1 hypothetical protein 2277183 3961269 Rfer_2103 Rhodoferax ferrireducens T118 hypothetical protein YP_523358.1 2276950 D 338969 CDS YP_523359.1 89900888 3961270 2277289..2277813 1 NC_007908.1 disulfide bond formation protein DsbB 2277813 3961270 Rfer_2104 Rhodoferax ferrireducens T118 disulfide bond formation protein DsbB YP_523359.1 2277289 D 338969 CDS YP_523360.1 89900889 3961271 complement(2277872..2279227) 1 NC_007908.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2279227 3961271 Rfer_2105 Rhodoferax ferrireducens T118 N-acetylglutamate synthase YP_523360.1 2277872 R 338969 CDS YP_523361.1 89900890 3962458 2279307..2283203 1 NC_007908.1 ATP-dependent helicase HrpA 2283203 3962458 Rfer_2106 Rhodoferax ferrireducens T118 ATP-dependent helicase HrpA YP_523361.1 2279307 D 338969 CDS YP_523362.1 89900891 3962459 2283200..2284585 1 NC_007908.1 sodium:neurotransmitter symporter 2284585 3962459 Rfer_2107 Rhodoferax ferrireducens T118 sodium:neurotransmitter symporter YP_523362.1 2283200 D 338969 CDS YP_523363.1 89900892 3962460 complement(2284805..2285239) 1 NC_007908.1 hypothetical protein 2285239 3962460 Rfer_2108 Rhodoferax ferrireducens T118 hypothetical protein YP_523363.1 2284805 R 338969 CDS YP_523364.1 89900893 3962461 complement(2285394..2286530) 1 NC_007908.1 glucose sorbosone dehydrogenase 2286530 3962461 Rfer_2109 Rhodoferax ferrireducens T118 glucose sorbosone dehydrogenase YP_523364.1 2285394 R 338969 CDS YP_523365.1 89900894 3962462 complement(2286579..2287475) 1 NC_007908.1 hypothetical protein 2287475 3962462 Rfer_2110 Rhodoferax ferrireducens T118 hypothetical protein YP_523365.1 2286579 R 338969 CDS YP_523366.1 89900895 3962463 complement(2287837..2288997) 1 NC_007908.1 catalyzes the transfer of an amino moiety; putative aminotransferase 2288997 3962463 Rfer_2111 Rhodoferax ferrireducens T118 putative aminotransferase YP_523366.1 2287837 R 338969 CDS YP_523367.1 89900896 3962464 complement(2289028..2289981) 1 NC_007908.1 transcriptional regulator CysB-like protein 2289981 3962464 Rfer_2112 Rhodoferax ferrireducens T118 transcriptional regulator CysB-like protein YP_523367.1 2289028 R 338969 CDS YP_523368.1 89900897 3962465 complement(2290058..2290429) 1 NC_007908.1 cobalamin (vitamin B12) biosynthesis CbiX protein 2290429 3962465 Rfer_2113 Rhodoferax ferrireducens T118 cobalamin (vitamin B12) biosynthesis CbiX protein YP_523368.1 2290058 R 338969 CDS YP_523369.1 89900898 3962466 complement(2290464..2291570) 1 NC_007908.1 permease YjgP/YjgQ 2291570 3962466 Rfer_2114 Rhodoferax ferrireducens T118 permease YjgP/YjgQ YP_523369.1 2290464 R 338969 CDS YP_523370.1 89900899 3962467 complement(2291567..2292688) 1 NC_007908.1 permease YjgP/YjgQ 2292688 3962467 Rfer_2115 Rhodoferax ferrireducens T118 permease YjgP/YjgQ YP_523370.1 2291567 R 338969 CDS YP_523371.1 89900900 3962468 2292828..2294267 1 NC_007908.1 leucyl aminopeptidase 2294267 3962468 Rfer_2116 Rhodoferax ferrireducens T118 leucyl aminopeptidase YP_523371.1 2292828 D 338969 CDS YP_523372.1 89900901 3962469 2294285..2294719 1 NC_007908.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 2294719 3962469 Rfer_2117 Rhodoferax ferrireducens T118 DNA polymerase III subunit chi YP_523372.1 2294285 D 338969 CDS YP_523373.1 89900902 3962470 2294719..2295021 1 NC_007908.1 hypothetical protein 2295021 3962470 Rfer_2118 Rhodoferax ferrireducens T118 hypothetical protein YP_523373.1 2294719 D 338969 CDS YP_523374.1 89900903 3962471 2295148..2296278 1 NC_007908.1 extracellular ligand-binding receptor 2296278 3962471 Rfer_2119 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_523374.1 2295148 D 338969 CDS YP_523375.1 89900904 3962473 complement(2296538..2297446) 1 NC_007908.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2297446 3962473 Rfer_2120 Rhodoferax ferrireducens T118 ornithine carbamoyltransferase YP_523375.1 2296538 R 338969 CDS YP_523376.1 89900905 3962474 complement(2297499..2298713) 1 NC_007908.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2298713 3962474 Rfer_2121 Rhodoferax ferrireducens T118 acetylornithine aminotransferase YP_523376.1 2297499 R 338969 CDS YP_523377.1 89900906 3962475 complement(2299022..2299324) 1 NC_007908.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2299324 rpsT 3962475 rpsT Rhodoferax ferrireducens T118 30S ribosomal protein S20 YP_523377.1 2299022 R 338969 CDS YP_523378.1 89900907 3962476 2299338..2300975 1 NC_007908.1 integral membrane protein MviN 2300975 3962476 Rfer_2123 Rhodoferax ferrireducens T118 integral membrane protein MviN YP_523378.1 2299338 D 338969 CDS YP_523379.1 89900908 3962076 complement(2301060..2301971) 1 NC_007908.1 hypothetical protein 2301971 3962076 Rfer_2124 Rhodoferax ferrireducens T118 hypothetical protein YP_523379.1 2301060 R 338969 CDS YP_523380.1 89900909 3962077 complement(2302001..2302426) 1 NC_007908.1 hypothetical protein 2302426 3962077 Rfer_2125 Rhodoferax ferrireducens T118 hypothetical protein YP_523380.1 2302001 R 338969 CDS YP_523381.1 89900910 3962078 2302559..2304847 1 NC_007908.1 lysine decarboxylase 2304847 3962078 Rfer_2126 Rhodoferax ferrireducens T118 lysine decarboxylase YP_523381.1 2302559 D 338969 CDS YP_523382.1 89900911 3962079 complement(2304924..2305709) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 2305709 3962079 Rfer_2127 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_523382.1 2304924 R 338969 CDS YP_523383.1 89900912 3962080 2305825..2307636 1 NC_007908.1 extracellular solute-binding protein 2307636 3962080 Rfer_2128 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_523383.1 2305825 D 338969 CDS YP_523384.1 89900913 3962081 2307640..2308674 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 2308674 3962081 Rfer_2129 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523384.1 2307640 D 338969 CDS YP_523385.1 89900914 3962082 2308658..2309797 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 2309797 3962082 Rfer_2130 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523385.1 2308658 D 338969 CDS YP_523386.1 89900915 3962083 2309794..2311491 1 NC_007908.1 ABC transporter-like protein 2311491 3962083 Rfer_2131 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523386.1 2309794 D 338969 CDS YP_523387.1 89900916 3962084 2311607..2312221 1 NC_007908.1 hypothetical protein 2312221 3962084 Rfer_2132 Rhodoferax ferrireducens T118 hypothetical protein YP_523387.1 2311607 D 338969 CDS YP_523388.1 89900917 3962085 2312244..2313740 1 NC_007908.1 NusA antitermination factor 2313740 3962085 Rfer_2133 Rhodoferax ferrireducens T118 NusA antitermination factor YP_523388.1 2312244 D 338969 CDS YP_523389.1 89900918 3962086 2313765..2316701 1 NC_007908.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2316701 infB 3962086 infB Rhodoferax ferrireducens T118 translation initiation factor IF-2 YP_523389.1 2313765 D 338969 CDS YP_523390.1 89900919 3962087 2316730..2317098 1 NC_007908.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2317098 rbfA 3962087 rbfA Rhodoferax ferrireducens T118 ribosome-binding factor A YP_523390.1 2316730 D 338969 CDS YP_523391.1 89900920 3962088 2317103..2318119 1 NC_007908.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2318119 truB 3962088 truB Rhodoferax ferrireducens T118 tRNA pseudouridine synthase B YP_523391.1 2317103 D 338969 CDS YP_523392.1 89900921 3962089 2318133..2319956 1 NC_007908.1 GTP-binding protein TypA 2319956 3962089 Rfer_2137 Rhodoferax ferrireducens T118 GTP-binding protein TypA YP_523392.1 2318133 D 338969 CDS YP_523393.1 89900922 3962090 2320007..2320849 1 NC_007908.1 hypothetical protein 2320849 3962090 Rfer_2138 Rhodoferax ferrireducens T118 hypothetical protein YP_523393.1 2320007 D 338969 CDS YP_523394.1 89900923 3962091 2320846..2321988 1 NC_007908.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 2321988 3962091 Rfer_2139 Rhodoferax ferrireducens T118 3-hydroxyisobutyryl-CoA hydrolase YP_523394.1 2320846 D 338969 CDS YP_523395.1 89900924 3962092 complement(2322234..2322776) 1 NC_007908.1 phasin 2322776 3962092 Rfer_2140 Rhodoferax ferrireducens T118 phasin YP_523395.1 2322234 R 338969 CDS YP_523396.1 89900925 3962093 2322972..2323466 1 NC_007908.1 thioesterase superfamily protein 2323466 3962093 Rfer_2141 Rhodoferax ferrireducens T118 thioesterase superfamily protein YP_523396.1 2322972 D 338969 CDS YP_523397.1 89900926 3962094 2323463..2324173 1 NC_007908.1 nitroreductase 2324173 3962094 Rfer_2142 Rhodoferax ferrireducens T118 nitroreductase YP_523397.1 2323463 D 338969 CDS YP_523398.1 89900927 3961194 2324452..2325735 1 NC_007908.1 putative Na+/H+ antiporter 2325735 3961194 Rfer_2143 Rhodoferax ferrireducens T118 putative Na+/H+ antiporter YP_523398.1 2324452 D 338969 CDS YP_523399.1 89900928 3961195 2325773..2326756 1 NC_007908.1 D-isomer specific 2-hydroxyacid dehydrogenase 2326756 3961195 Rfer_2144 Rhodoferax ferrireducens T118 D-isomer specific 2-hydroxyacid dehydrogenase YP_523399.1 2325773 D 338969 CDS YP_523400.1 89900929 3961196 complement(2326892..2329768) 1 NC_007908.1 AMP-dependent synthetase and ligase 2329768 3961196 Rfer_2145 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_523400.1 2326892 R 338969 CDS YP_523401.1 89900930 3961197 complement(2329872..2330615) 1 NC_007908.1 hypothetical protein 2330615 3961197 Rfer_2146 Rhodoferax ferrireducens T118 hypothetical protein YP_523401.1 2329872 R 338969 CDS YP_523402.1 89900931 3961198 complement(2330743..2331816) 1 NC_007908.1 hypothetical protein 2331816 3961198 Rfer_2147 Rhodoferax ferrireducens T118 hypothetical protein YP_523402.1 2330743 R 338969 CDS YP_523403.1 89900932 3961199 2332011..2332892 1 NC_007908.1 hypothetical protein 2332892 3961199 Rfer_2148 Rhodoferax ferrireducens T118 hypothetical protein YP_523403.1 2332011 D 338969 CDS YP_523404.1 89900933 3961200 2332889..2334355 1 NC_007908.1 hypothetical protein 2334355 3961200 Rfer_2149 Rhodoferax ferrireducens T118 hypothetical protein YP_523404.1 2332889 D 338969 CDS YP_523405.1 89900934 3961201 2334377..2335156 1 NC_007908.1 hypothetical protein 2335156 3961201 Rfer_2150 Rhodoferax ferrireducens T118 hypothetical protein YP_523405.1 2334377 D 338969 CDS YP_523406.1 89900935 3961202 complement(2335176..2335535) 1 NC_007908.1 antibiotic biosynthesis monooxygenase 2335535 3961202 Rfer_2151 Rhodoferax ferrireducens T118 antibiotic biosynthesis monooxygenase YP_523406.1 2335176 R 338969 CDS YP_523407.1 89900936 3961203 2335674..2336807 1 NC_007908.1 mechanosensitive ion channel protein MscS 2336807 3961203 Rfer_2152 Rhodoferax ferrireducens T118 mechanosensitive ion channel protein MscS YP_523407.1 2335674 D 338969 CDS YP_523408.1 89900937 3961204 2336981..2338441 1 NC_007908.1 phospholipase D/transphosphatidylase 2338441 3961204 Rfer_2153 Rhodoferax ferrireducens T118 phospholipase D/transphosphatidylase YP_523408.1 2336981 D 338969 CDS YP_523409.1 89900938 3961205 2338522..2338869 1 NC_007908.1 ribosomal subunit Interface protein 2338869 3961205 Rfer_2154 Rhodoferax ferrireducens T118 ribosomal subunit Interface protein YP_523409.1 2338522 D 338969 CDS YP_523410.1 89900939 3961206 2339030..2340070 1 NC_007908.1 HAD family hydrolase 2340070 3961206 Rfer_2155 Rhodoferax ferrireducens T118 HAD family hydrolase YP_523410.1 2339030 D 338969 CDS YP_523411.1 89900940 3961207 complement(2340122..2345233) 1 NC_007908.1 amylomaltase; acts to release glucose from maltodextrins; putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase 2345233 3961207 Rfer_2156 Rhodoferax ferrireducens T118 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase YP_523411.1 2340122 R 338969 CDS YP_523412.1 89900941 3961208 complement(2345226..2346989) 1 NC_007908.1 malto-oligosyltrehalose trehalohydrolase 2346989 3961208 Rfer_2157 Rhodoferax ferrireducens T118 malto-oligosyltrehalose trehalohydrolase YP_523412.1 2345226 R 338969 CDS YP_523413.1 89900942 3961209 complement(2347090..2349249) 1 NC_007908.1 glycogen debranching protein GlgX 2349249 3961209 Rfer_2158 Rhodoferax ferrireducens T118 glycogen debranching protein GlgX YP_523413.1 2347090 R 338969 CDS YP_523414.1 89900943 3961210 complement(2349236..2349928) 1 NC_007908.1 TM helix protein 2349928 3961210 Rfer_2159 Rhodoferax ferrireducens T118 TM helix protein YP_523414.1 2349236 R 338969 CDS YP_523415.1 89900944 3961211 complement(2349969..2353307) 1 NC_007908.1 trehalose synthase-like protein 2353307 3961211 Rfer_2160 Rhodoferax ferrireducens T118 trehalose synthase-like protein YP_523415.1 2349969 R 338969 CDS YP_523416.1 89900945 3961212 complement(2353320..2355362) 1 NC_007908.1 alpha amylase 2355362 3961212 Rfer_2161 Rhodoferax ferrireducens T118 alpha amylase YP_523416.1 2353320 R 338969 CDS YP_523417.1 89900946 3961213 complement(2355355..2357232) 1 NC_007908.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 2357232 3961213 Rfer_2162 Rhodoferax ferrireducens T118 glycogen branching enzyme YP_523417.1 2355355 R 338969 CDS YP_523418.1 89900947 3961292 complement(2357346..2359577) 1 NC_007908.1 Alpha,alpha-trehalose-phosphate synthase 2359577 3961292 Rfer_2163 Rhodoferax ferrireducens T118 Alpha,alpha-trehalose-phosphate synthase YP_523418.1 2357346 R 338969 CDS YP_523419.1 89900948 3961293 complement(2359622..2360170) 1 NC_007908.1 MarR family transcriptional regulator 2360170 3961293 Rfer_2164 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_523419.1 2359622 R 338969 CDS YP_523420.1 89900949 3961294 complement(2360453..2360680) 1 NC_007908.1 hypothetical protein 2360680 3961294 Rfer_2165 Rhodoferax ferrireducens T118 hypothetical protein YP_523420.1 2360453 R 338969 CDS YP_523421.1 89900950 3961295 2360903..2362303 1 NC_007908.1 hypothetical protein 2362303 3961295 Rfer_2166 Rhodoferax ferrireducens T118 hypothetical protein YP_523421.1 2360903 D 338969 CDS YP_523422.1 89900951 3961296 2362300..2363511 1 NC_007908.1 major facilitator transporter 2363511 3961296 Rfer_2167 Rhodoferax ferrireducens T118 major facilitator transporter YP_523422.1 2362300 D 338969 CDS YP_523423.1 89900952 3961297 complement(2363564..2364247) 1 NC_007908.1 hypothetical protein 2364247 3961297 Rfer_2168 Rhodoferax ferrireducens T118 hypothetical protein YP_523423.1 2363564 R 338969 CDS YP_523424.1 89900953 3961298 complement(2364147..2365871) 1 NC_007908.1 DEAD/DEAH box helicase-like protein 2365871 3961298 Rfer_2169 Rhodoferax ferrireducens T118 DEAD/DEAH box helicase-like protein YP_523424.1 2364147 R 338969 CDS YP_523425.1 89900954 3961299 2366244..2368457 1 NC_007908.1 hypothetical protein 2368457 3961299 Rfer_2170 Rhodoferax ferrireducens T118 hypothetical protein YP_523425.1 2366244 D 338969 CDS YP_523426.1 89900955 3961300 2368536..2370197 1 NC_007908.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 2370197 3961300 Rfer_2171 Rhodoferax ferrireducens T118 putative ABC transporter ATP-binding protein YP_523426.1 2368536 D 338969 CDS YP_523427.1 89900956 3961301 complement(2370222..2371022) 1 NC_007908.1 UbiE/COQ5 methyltransferase 2371022 3961301 Rfer_2172 Rhodoferax ferrireducens T118 UbiE/COQ5 methyltransferase YP_523427.1 2370222 R 338969 CDS YP_523428.1 89900957 3961302 complement(2371190..2372035) 1 NC_007908.1 hypothetical protein 2372035 3961302 Rfer_2173 Rhodoferax ferrireducens T118 hypothetical protein YP_523428.1 2371190 R 338969 CDS YP_523429.1 89900958 3961303 complement(2372127..2373323) 1 NC_007908.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2373323 3961303 Rfer_2174 Rhodoferax ferrireducens T118 aromatic amino acid aminotransferase YP_523429.1 2372127 R 338969 CDS YP_523430.1 89900959 3961304 2373430..2375562 1 NC_007908.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2375562 3961304 Rfer_2175 Rhodoferax ferrireducens T118 excinuclease ABC subunit B YP_523430.1 2373430 D 338969 CDS YP_523431.1 89900960 3961305 2375664..2376200 1 NC_007908.1 BadM/Rrf2 family transcriptional regulator 2376200 3961305 Rfer_2176 Rhodoferax ferrireducens T118 BadM/Rrf2 family transcriptional regulator YP_523431.1 2375664 D 338969 CDS YP_523432.1 89900961 3961306 2376181..2377473 1 NC_007908.1 cysteine desulfurase IscS 2377473 3961306 Rfer_2177 Rhodoferax ferrireducens T118 cysteine desulfurase IscS YP_523432.1 2376181 D 338969 CDS YP_523433.1 89900962 3961307 2377529..2377927 1 NC_007908.1 scaffold protein 2377927 3961307 Rfer_2178 Rhodoferax ferrireducens T118 scaffold protein YP_523433.1 2377529 D 338969 CDS YP_523434.1 89900963 3961308 2377930..2378253 1 NC_007908.1 iron-sulfur cluster assembly protein IscA 2378253 3961308 Rfer_2179 Rhodoferax ferrireducens T118 iron-sulfur cluster assembly protein IscA YP_523434.1 2377930 D 338969 CDS YP_523435.1 89900964 3961309 2378250..2378783 1 NC_007908.1 co-chaperone Hsc20 2378783 3961309 Rfer_2180 Rhodoferax ferrireducens T118 co-chaperone Hsc20 YP_523435.1 2378250 D 338969 CDS YP_523436.1 89900965 3961310 2378809..2380665 1 NC_007908.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2380665 hscA 3961310 hscA Rhodoferax ferrireducens T118 chaperone protein HscA YP_523436.1 2378809 D 338969 CDS YP_523437.1 89900966 3960981 2380688..2381026 1 NC_007908.1 2Fe-2S type ferredoxin 2381026 3960981 Rfer_2182 Rhodoferax ferrireducens T118 2Fe-2S type ferredoxin YP_523437.1 2380688 D 338969 CDS YP_523438.1 89900967 3960982 2381029..2381730 1 NC_007908.1 DNA polymerase III subunit epsilon 2381730 3960982 Rfer_2183 Rhodoferax ferrireducens T118 DNA polymerase III subunit epsilon YP_523438.1 2381029 D 338969 CDS YP_523439.1 89900968 3960984 complement(2381930..2383555) 1 NC_007908.1 unknown function; putative glutamate synthase (NADPH) small subunit 2383555 3960984 Rfer_2184 Rhodoferax ferrireducens T118 putative glutamate synthase (NADPH) small subunit YP_523439.1 2381930 R 338969 CDS YP_523440.1 89900969 3960985 complement(2383618..2384610) 1 NC_007908.1 thiamine pyrophosphate enzyme-like protein 2384610 3960985 Rfer_2185 Rhodoferax ferrireducens T118 thiamine pyrophosphate enzyme-like protein YP_523440.1 2383618 R 338969 CDS YP_523441.1 89900970 3960986 complement(2384706..2385959) 1 NC_007908.1 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein 2385959 3960986 Rfer_2186 Rhodoferax ferrireducens T118 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein YP_523441.1 2384706 R 338969 CDS YP_523442.1 89900971 3960987 complement(2385952..2386539) 1 NC_007908.1 2-oxoacid:acceptor oxidoreductase subunit gamma, pyruvate/2-ketoisovalerate 2386539 3960987 Rfer_2187 Rhodoferax ferrireducens T118 2-oxoacid:acceptor oxidoreductase subunit gamma, pyruvate/2-ketoisovalerate YP_523442.1 2385952 R 338969 CDS YP_523443.1 89900972 3960988 2386802..2387845 1 NC_007908.1 zinc-binding alcohol dehydrogenase 2387845 3960988 Rfer_2188 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_523443.1 2386802 D 338969 CDS YP_523444.1 89900973 3960989 complement(2387936..2389144) 1 NC_007908.1 beta-lactamase 2389144 3960989 Rfer_2189 Rhodoferax ferrireducens T118 beta-lactamase YP_523444.1 2387936 R 338969 CDS YP_523445.1 89900974 3960990 complement(2389443..2390264) 1 NC_007908.1 hypothetical protein 2390264 3960990 Rfer_2190 Rhodoferax ferrireducens T118 hypothetical protein YP_523445.1 2389443 R 338969 CDS YP_523446.1 89900975 3960991 2390483..2392882 1 NC_007908.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2392882 3960991 Rfer_2191 Rhodoferax ferrireducens T118 phosphoenolpyruvate synthase YP_523446.1 2390483 D 338969 CDS YP_523447.1 89900976 3960992 2392928..2395237 1 NC_007908.1 Na+/solute symporter 2395237 3960992 Rfer_2192 Rhodoferax ferrireducens T118 Na+/solute symporter YP_523447.1 2392928 D 338969 CDS YP_523448.1 89900977 3960993 2395358..2395723 1 NC_007908.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2395723 rpsF 3960993 rpsF Rhodoferax ferrireducens T118 30S ribosomal protein S6 YP_523448.1 2395358 D 338969 CDS YP_523449.1 89900978 3960994 2395747..2396046 1 NC_007908.1 putative primosomal replication protein 2396046 3960994 Rfer_2194 Rhodoferax ferrireducens T118 putative primosomal replication protein YP_523449.1 2395747 D 338969 CDS YP_523450.1 89900979 3960995 2396076..2396360 1 NC_007908.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2396360 rpsR 3960995 rpsR Rhodoferax ferrireducens T118 30S ribosomal protein S18 YP_523450.1 2396076 D 338969 CDS YP_523451.1 89900980 3960996 2396372..2396824 1 NC_007908.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2396824 rplI 3960996 rplI Rhodoferax ferrireducens T118 50S ribosomal protein L9 YP_523451.1 2396372 D 338969 CDS YP_523452.1 89900981 3960997 2397136..2400045 1 NC_007908.1 ribonucleotide reductase large subunit 2400045 3960997 Rfer_2197 Rhodoferax ferrireducens T118 ribonucleotide reductase large subunit YP_523452.1 2397136 D 338969 CDS YP_523453.1 89900982 3960998 complement(2400085..2400522) 1 NC_007908.1 hypothetical protein 2400522 3960998 Rfer_2198 Rhodoferax ferrireducens T118 hypothetical protein YP_523453.1 2400085 R 338969 CDS YP_523454.1 89900983 3960999 2400791..2404306 1 NC_007908.1 chromosome segregation protein SMC 2404306 3960999 Rfer_2199 Rhodoferax ferrireducens T118 chromosome segregation protein SMC YP_523454.1 2400791 D 338969 CDS YP_523455.1 89900984 3963147 2404306..2405358 1 NC_007908.1 hypothetical protein 2405358 3963147 Rfer_2200 Rhodoferax ferrireducens T118 hypothetical protein YP_523455.1 2404306 D 338969 CDS YP_523456.1 89900985 3963148 2405385..2407457 1 NC_007908.1 DNA ligase 2407457 3963148 Rfer_2201 Rhodoferax ferrireducens T118 DNA ligase YP_523456.1 2405385 D 338969 CDS YP_523457.1 89900986 3963149 2407444..2408004 1 NC_007908.1 peptide deformylase 2408004 3963149 Rfer_2202 Rhodoferax ferrireducens T118 peptide deformylase YP_523457.1 2407444 D 338969 CDS YP_523458.1 89900987 3963150 complement(2408035..2409912) 1 NC_007908.1 DNA primase 2409912 3963150 Rfer_2203 Rhodoferax ferrireducens T118 DNA primase YP_523458.1 2408035 R 338969 CDS YP_523459.1 89900988 3963151 complement(2410028..2410786) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 2410786 3963151 Rfer_2204 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_523459.1 2410028 R 338969 CDS YP_523460.1 89900989 3963152 complement(2410895..2411968) 1 NC_007908.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2411968 3963152 Rfer_2205 Rhodoferax ferrireducens T118 dihydroorotate dehydrogenase 2 YP_523460.1 2410895 R 338969 CDS YP_523461.1 89900990 3963153 2412015..2412719 1 NC_007908.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2412719 3963153 Rfer_2206 Rhodoferax ferrireducens T118 ribose-5-phosphate isomerase A YP_523461.1 2412015 D 338969 CDS YP_523462.1 89900991 3963154 complement(2412766..2413431) 1 NC_007908.1 hypothetical protein 2413431 3963154 Rfer_2207 Rhodoferax ferrireducens T118 hypothetical protein YP_523462.1 2412766 R 338969 CDS YP_523463.1 89900992 3963155 complement(2413446..2415485) 1 NC_007908.1 oligopeptidase A 2415485 3963155 Rfer_2208 Rhodoferax ferrireducens T118 oligopeptidase A YP_523463.1 2413446 R 338969 CDS YP_523464.1 89900993 3963156 complement(2415492..2416355) 1 NC_007908.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2416355 3963156 Rfer_2209 Rhodoferax ferrireducens T118 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_523464.1 2415492 R 338969 CDS YP_523465.1 89900994 3963157 complement(2416430..2417056) 1 NC_007908.1 two component LuxR family transcriptional regulator 2417056 3963157 Rfer_2210 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_523465.1 2416430 R 338969 CDS YP_523466.1 89900995 3963158 complement(2417053..2419641) 1 NC_007908.1 multi-sensor signal transduction histidine kinase 2419641 3963158 Rfer_2211 Rhodoferax ferrireducens T118 multi-sensor signal transduction histidine kinase YP_523466.1 2417053 R 338969 CDS YP_523467.1 89900996 3963159 2419826..2422537 1 NC_007908.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2422537 aceE 3963159 aceE Rhodoferax ferrireducens T118 pyruvate dehydrogenase subunit E1 YP_523467.1 2419826 D 338969 CDS YP_523468.1 89900997 3963160 2422679..2424367 1 NC_007908.1 dihydrolipoamide acetyltransferase 2424367 3963160 Rfer_2213 Rhodoferax ferrireducens T118 dihydrolipoamide acetyltransferase YP_523468.1 2422679 D 338969 CDS YP_523469.1 89900998 3963161 2424497..2426356 1 NC_007908.1 dihydrolipoamide dehydrogenase 2426356 3963161 Rfer_2214 Rhodoferax ferrireducens T118 dihydrolipoamide dehydrogenase YP_523469.1 2424497 D 338969 CDS YP_523470.1 89900999 3963162 complement(2426491..2428026) 1 NC_007908.1 SpoVR family protein 2428026 3963162 Rfer_2215 Rhodoferax ferrireducens T118 SpoVR family protein YP_523470.1 2426491 R 338969 CDS YP_523471.1 89901000 3963163 complement(2428035..2429303) 1 NC_007908.1 hypothetical protein 2429303 3963163 Rfer_2216 Rhodoferax ferrireducens T118 hypothetical protein YP_523471.1 2428035 R 338969 CDS YP_523472.1 89901001 3963164 complement(2429353..2431275) 1 NC_007908.1 putative serine protein kinase PrkA 2431275 3963164 Rfer_2217 Rhodoferax ferrireducens T118 putative serine protein kinase PrkA YP_523472.1 2429353 R 338969 CDS YP_523473.1 89901002 3963165 2431652..2433781 1 NC_007908.1 hypothetical protein 2433781 3963165 Rfer_2218 Rhodoferax ferrireducens T118 hypothetical protein YP_523473.1 2431652 D 338969 CDS YP_523474.1 89901003 3961951 complement(2434175..2435674) 1 NC_007908.1 diguanylate cyclase/phosphodiesterase 2435674 3961951 Rfer_2220 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_523474.1 2434175 R 338969 CDS YP_523475.1 89901004 3961952 2436054..2436479 1 NC_007908.1 hypothetical protein 2436479 3961952 Rfer_2221 Rhodoferax ferrireducens T118 hypothetical protein YP_523475.1 2436054 D 338969 CDS YP_523476.1 89901005 3961953 2436581..2437198 1 NC_007908.1 hypothetical protein 2437198 3961953 Rfer_2222 Rhodoferax ferrireducens T118 hypothetical protein YP_523476.1 2436581 D 338969 CDS YP_523477.1 89901006 3961954 complement(2437210..2438445) 1 NC_007908.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2438445 3961954 Rfer_2223 Rhodoferax ferrireducens T118 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_523477.1 2437210 R 338969 CDS YP_523478.1 89901007 3961955 2438710..2439189 1 NC_007908.1 transport protein 2439189 3961955 Rfer_2224 Rhodoferax ferrireducens T118 transport protein YP_523478.1 2438710 D 338969 CDS YP_523479.1 89901008 3961956 2439479..2441230 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 2441230 3961956 Rfer_2225 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523479.1 2439479 D 338969 CDS YP_523480.1 89901009 3961957 complement(2441426..2441884) 1 NC_007908.1 hypothetical protein 2441884 3961957 Rfer_2226 Rhodoferax ferrireducens T118 hypothetical protein YP_523480.1 2441426 R 338969 CDS YP_523481.1 89901010 3961958 complement(2442088..2445135) 1 NC_007908.1 XRE family transcriptional regulator 2445135 3961958 Rfer_2227 Rhodoferax ferrireducens T118 XRE family transcriptional regulator YP_523481.1 2442088 R 338969 CDS YP_523482.1 89901011 3961959 2445243..2445704 1 NC_007908.1 globin 2445704 3961959 Rfer_2228 Rhodoferax ferrireducens T118 globin YP_523482.1 2445243 D 338969 CDS YP_523483.1 89901012 3961960 2445751..2446581 1 NC_007908.1 type 11 methyltransferase 2446581 3961960 Rfer_2229 Rhodoferax ferrireducens T118 type 11 methyltransferase YP_523483.1 2445751 D 338969 CDS YP_523484.1 89901013 3961961 2446855..2447040 1 NC_007908.1 hypothetical protein 2447040 3961961 Rfer_2230 Rhodoferax ferrireducens T118 hypothetical protein YP_523484.1 2446855 D 338969 CDS YP_523485.1 89901014 3961963 2447502..2448272 1 NC_007908.1 RNA methyltransferase TrmH 2448272 3961963 Rfer_2232 Rhodoferax ferrireducens T118 RNA methyltransferase TrmH YP_523485.1 2447502 D 338969 CDS YP_523486.1 89901015 3961964 2448325..2448684 1 NC_007908.1 hypothetical protein 2448684 3961964 Rfer_2233 Rhodoferax ferrireducens T118 hypothetical protein YP_523486.1 2448325 D 338969 CDS YP_523487.1 89901016 3961965 complement(2448776..2449339) 1 NC_007908.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 2449339 3961965 Rfer_2234 Rhodoferax ferrireducens T118 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_523487.1 2448776 R 338969 CDS YP_523488.1 89901017 3961966 complement(2449561..2450424) 1 NC_007908.1 hypothetical protein 2450424 3961966 Rfer_2235 Rhodoferax ferrireducens T118 hypothetical protein YP_523488.1 2449561 R 338969 CDS YP_523489.1 89901018 3961967 complement(2450485..2450790) 1 NC_007908.1 hypothetical protein 2450790 3961967 Rfer_2236 Rhodoferax ferrireducens T118 hypothetical protein YP_523489.1 2450485 R 338969 CDS YP_523490.1 89901019 3961968 complement(2450777..2451178) 1 NC_007908.1 hypothetical protein 2451178 3961968 Rfer_2237 Rhodoferax ferrireducens T118 hypothetical protein YP_523490.1 2450777 R 338969 CDS YP_523491.1 89901020 3961969 complement(2451203..2451514) 1 NC_007908.1 hypothetical protein 2451514 3961969 Rfer_2238 Rhodoferax ferrireducens T118 hypothetical protein YP_523491.1 2451203 R 338969 CDS YP_523492.1 89901021 3962040 2451645..2453045 1 NC_007908.1 coenzyme F390 synthetase-like protein 2453045 3962040 Rfer_2239 Rhodoferax ferrireducens T118 coenzyme F390 synthetase-like protein YP_523492.1 2451645 D 338969 CDS YP_523493.1 89901022 3962041 complement(2453073..2453978) 1 NC_007908.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 2453978 3962041 Rfer_2240 Rhodoferax ferrireducens T118 phosphoribosylpyrophosphate synthetase YP_523493.1 2453073 R 338969 CDS YP_523494.1 89901023 3962042 complement(2453978..2455546) 1 NC_007908.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 2455546 3962042 Rfer_2241 Rhodoferax ferrireducens T118 thymidine phosphorylase YP_523494.1 2453978 R 338969 CDS YP_523495.1 89901024 3962043 complement(2455677..2456231) 1 NC_007908.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2456231 3962043 Rfer_2242 Rhodoferax ferrireducens T118 elongation factor P YP_523495.1 2455677 R 338969 CDS YP_523496.1 89901025 3962044 complement(2456324..2457469) 1 NC_007908.1 hypothetical protein 2457469 3962044 Rfer_2243 Rhodoferax ferrireducens T118 hypothetical protein YP_523496.1 2456324 R 338969 CDS YP_523497.1 89901026 3962045 2457472..2459487 1 NC_007908.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2459487 uvrC 3962045 uvrC Rhodoferax ferrireducens T118 excinuclease ABC subunit C YP_523497.1 2457472 D 338969 CDS YP_523498.1 89901027 3962046 2459540..2460106 1 NC_007908.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2460106 3962046 Rfer_2245 Rhodoferax ferrireducens T118 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_523498.1 2459540 D 338969 CDS YP_523499.1 89901028 3962047 2460113..2461015 1 NC_007908.1 hypothetical protein 2461015 3962047 Rfer_2246 Rhodoferax ferrireducens T118 hypothetical protein YP_523499.1 2460113 D 338969 CDS YP_523500.1 89901029 3962048 2461057..2462142 1 NC_007908.1 tartrate dehydrogenase 2462142 3962048 Rfer_2247 Rhodoferax ferrireducens T118 tartrate dehydrogenase YP_523500.1 2461057 D 338969 CDS YP_523501.1 89901030 3962049 2462319..2462657 1 NC_007908.1 histone-like protein DNA-binding protein 2462657 3962049 Rfer_2248 Rhodoferax ferrireducens T118 histone-like protein DNA-binding protein YP_523501.1 2462319 D 338969 CDS YP_523502.1 89901031 3962051 2462813..2464735 1 NC_007908.1 PpiC-type peptidyl-prolyl cis-trans isomerase 2464735 3962051 Rfer_2249 Rhodoferax ferrireducens T118 PpiC-type peptidyl-prolyl cis-trans isomerase YP_523502.1 2462813 D 338969 CDS YP_523503.1 89901032 3962053 complement(2464967..2465773) 1 NC_007908.1 hypothetical protein 2465773 3962053 Rfer_2250 Rhodoferax ferrireducens T118 hypothetical protein YP_523503.1 2464967 R 338969 CDS YP_523504.1 89901033 3962054 complement(2465776..2465937) 1 NC_007908.1 hypothetical protein 2465937 3962054 Rfer_2251 Rhodoferax ferrireducens T118 hypothetical protein YP_523504.1 2465776 R 338969 CDS YP_523505.1 89901034 3962055 2466074..2466889 1 NC_007908.1 putative thiol:disulfide interchange protein 2466889 3962055 Rfer_2252 Rhodoferax ferrireducens T118 putative thiol:disulfide interchange protein YP_523505.1 2466074 D 338969 CDS YP_523506.1 89901035 3962056 complement(2466966..2467919) 1 NC_007908.1 glycine cleavage T protein (aminomethyl transferase) 2467919 3962056 Rfer_2253 Rhodoferax ferrireducens T118 glycine cleavage T protein (aminomethyl transferase) YP_523506.1 2466966 R 338969 CDS YP_523507.1 89901036 3960809 2467957..2468928 1 NC_007908.1 aminodeoxychorismate lyase 2468928 3960809 Rfer_2254 Rhodoferax ferrireducens T118 aminodeoxychorismate lyase YP_523507.1 2467957 D 338969 CDS YP_523508.1 89901037 3960810 2468932..2469579 1 NC_007908.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2469579 tmk 3960810 tmk Rhodoferax ferrireducens T118 thymidylate kinase YP_523508.1 2468932 D 338969 CDS YP_523509.1 89901038 3960811 2469576..2470586 1 NC_007908.1 DNA-directed DNA polymerase 2470586 3960811 Rfer_2256 Rhodoferax ferrireducens T118 DNA-directed DNA polymerase YP_523509.1 2469576 D 338969 CDS YP_523510.1 89901039 3960812 2470596..2470958 1 NC_007908.1 type IV pilus assembly PilZ 2470958 3960812 Rfer_2257 Rhodoferax ferrireducens T118 type IV pilus assembly PilZ YP_523510.1 2470596 D 338969 CDS YP_523511.1 89901040 3960813 2471048..2471842 1 NC_007908.1 TatD-like protein deoxyribonuclease 2471842 3960813 Rfer_2258 Rhodoferax ferrireducens T118 TatD-like protein deoxyribonuclease YP_523511.1 2471048 D 338969 CDS YP_523512.1 89901041 3960814 2471865..2472521 1 NC_007908.1 ankyrin 2472521 3960814 Rfer_2259 Rhodoferax ferrireducens T118 ankyrin YP_523512.1 2471865 D 338969 CDS YP_523513.1 89901042 3960815 complement(2472676..2473653) 1 NC_007908.1 hypothetical protein 2473653 3960815 Rfer_2260 Rhodoferax ferrireducens T118 hypothetical protein YP_523513.1 2472676 R 338969 CDS YP_523514.1 89901043 3960816 2473778..2474839 1 NC_007908.1 phage integrase 2474839 3960816 Rfer_2261 Rhodoferax ferrireducens T118 phage integrase YP_523514.1 2473778 D 338969 CDS YP_523515.1 89901044 3960817 complement(2475177..2477738) 1 NC_007908.1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2477738 3960817 Rfer_2262 Rhodoferax ferrireducens T118 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523515.1 2475177 R 338969 CDS YP_523516.1 89901045 3960818 complement(2477750..2480779) 1 NC_007908.1 periplasmic sensor hybrid histidine kinase 2480779 3960818 Rfer_2263 Rhodoferax ferrireducens T118 periplasmic sensor hybrid histidine kinase YP_523516.1 2477750 R 338969 CDS YP_523517.1 89901046 3960819 complement(2480809..2481753) 1 NC_007908.1 hypothetical protein 2481753 3960819 Rfer_2264 Rhodoferax ferrireducens T118 hypothetical protein YP_523517.1 2480809 R 338969 CDS YP_523518.1 89901047 3960820 2482439..2483107 1 NC_007908.1 hypothetical protein 2483107 3960820 Rfer_2265 Rhodoferax ferrireducens T118 hypothetical protein YP_523518.1 2482439 D 338969 CDS YP_523519.1 89901048 3960821 2483257..2484111 1 NC_007908.1 transposase IS116/IS110/IS902 2484111 3960821 Rfer_2266 Rhodoferax ferrireducens T118 transposase IS116/IS110/IS902 YP_523519.1 2483257 D 338969 CDS YP_523520.1 89901049 3960822 complement(2484644..2485990) 1 NC_007908.1 acetyl-CoA hydrolase/transferase 2485990 3960822 Rfer_2267 Rhodoferax ferrireducens T118 acetyl-CoA hydrolase/transferase YP_523520.1 2484644 R 338969 CDS YP_523521.1 89901050 3960823 complement(2486132..2487913) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 2487913 3960823 Rfer_2268 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_523521.1 2486132 R 338969 CDS YP_523522.1 89901051 3960824 complement(2487988..2489751) 1 NC_007908.1 electron-transferring-flavoprotein dehydrogenase 2489751 3960824 Rfer_2269 Rhodoferax ferrireducens T118 electron-transferring-flavoprotein dehydrogenase YP_523522.1 2487988 R 338969 CDS YP_523523.1 89901052 3960825 complement(2490133..2490867) 1 NC_007908.1 two component transcriptional regulator 2490867 3960825 Rfer_2270 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_523523.1 2490133 R 338969 CDS YP_523524.1 89901053 3960826 complement(2490864..2492894) 1 NC_007908.1 PAS/PAC sensor hybrid histidine kinase 2492894 3960826 Rfer_2271 Rhodoferax ferrireducens T118 PAS/PAC sensor hybrid histidine kinase YP_523524.1 2490864 R 338969 CDS YP_523525.1 89901054 3960827 complement(2492961..2493809) 1 NC_007908.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 2493809 3960827 Rfer_2272 Rhodoferax ferrireducens T118 3-hydroxybutyryl-CoA dehydrogenase YP_523525.1 2492961 R 338969 CDS YP_523526.1 89901055 3960828 complement(2493888..2495069) 1 NC_007908.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2495069 3960828 Rfer_2273 Rhodoferax ferrireducens T118 beta-ketothiolase YP_523526.1 2493888 R 338969 CDS YP_523527.1 89901056 3963317 2496363..2496806 1 NC_007908.1 hypothetical protein 2496806 3963317 Rfer_2275 Rhodoferax ferrireducens T118 hypothetical protein YP_523527.1 2496363 D 338969 CDS YP_523528.1 89901057 3963318 complement(2497124..2498095) 1 NC_007908.1 transposase, IS4 2498095 3963318 Rfer_2276 Rhodoferax ferrireducens T118 transposase, IS4 YP_523528.1 2497124 R 338969 CDS YP_523529.1 89901058 3963319 complement(2498228..2499688) 1 NC_007908.1 FAD dependent oxidoreductase 2499688 3963319 Rfer_2277 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_523529.1 2498228 R 338969 CDS YP_523530.1 89901059 3963320 2499928..2500749 1 NC_007908.1 MerR family transcriptional regulator 2500749 3963320 Rfer_2278 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_523530.1 2499928 D 338969 CDS YP_523531.1 89901060 3963324 2504956..2505669 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2505669 3963324 Rfer_2282 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_523531.1 2504956 D 338969 CDS YP_523532.1 89901061 3963325 complement(2505745..2507394) 1 NC_007908.1 AMP-dependent synthetase and ligase 2507394 3963325 Rfer_2283 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_523532.1 2505745 R 338969 CDS YP_523533.1 89901062 3963326 complement(2507471..2508385) 1 NC_007908.1 putative adenylate/guanylate cyclase 2508385 3963326 Rfer_2284 Rhodoferax ferrireducens T118 putative adenylate/guanylate cyclase YP_523533.1 2507471 R 338969 CDS YP_523534.1 89901063 3963327 complement(2508443..2509498) 1 NC_007908.1 peptidase U61, LD-carboxypeptidase A 2509498 3963327 Rfer_2285 Rhodoferax ferrireducens T118 peptidase U61, LD-carboxypeptidase A YP_523534.1 2508443 R 338969 CDS YP_523535.1 89901064 3963328 complement(2509495..2510586) 1 NC_007908.1 CMP/dCMP deaminase 2510586 3963328 Rfer_2286 Rhodoferax ferrireducens T118 CMP/dCMP deaminase YP_523535.1 2509495 R 338969 CDS YP_523536.1 89901065 3963329 complement(2510652..2512262) 1 NC_007908.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2512262 guaA 3963329 guaA Rhodoferax ferrireducens T118 GMP synthase YP_523536.1 2510652 R 338969 CDS YP_523537.1 89901066 3963330 complement(2512286..2513755) 1 NC_007908.1 inosine-5'-monophosphate dehydrogenase 2513755 3963330 Rfer_2288 Rhodoferax ferrireducens T118 inosine-5'-monophosphate dehydrogenase YP_523537.1 2512286 R 338969 CDS YP_523538.1 89901067 3963331 2513886..2514407 1 NC_007908.1 hypothetical protein 2514407 3963331 Rfer_2289 Rhodoferax ferrireducens T118 hypothetical protein YP_523538.1 2513886 D 338969 CDS YP_523539.1 89901068 3963332 complement(2514443..2514790) 1 NC_007908.1 hypothetical protein 2514790 3963332 Rfer_2290 Rhodoferax ferrireducens T118 hypothetical protein YP_523539.1 2514443 R 338969 CDS YP_523540.1 89901069 3963333 complement(2514780..2515223) 1 NC_007908.1 cyclase/dehydrase 2515223 3963333 Rfer_2291 Rhodoferax ferrireducens T118 cyclase/dehydrase YP_523540.1 2514780 R 338969 CDS YP_523541.1 89901070 3963334 complement(2515353..2516402) 1 NC_007908.1 biotin synthase 2516402 3963334 Rfer_2292 Rhodoferax ferrireducens T118 biotin synthase YP_523541.1 2515353 R 338969 CDS YP_523542.1 89901071 3964095 2516645..2517250 1 NC_007908.1 metal dependent phosphohydrolase 2517250 3964095 Rfer_2293 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_523542.1 2516645 D 338969 CDS YP_523543.1 89901072 3964096 complement(2517257..2518465) 1 NC_007908.1 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes 2518465 3964096 Rfer_2294 Rhodoferax ferrireducens T118 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_523543.1 2517257 R 338969 CDS YP_523544.1 89901073 3964097 complement(2518494..2519018) 1 NC_007908.1 phosphoribosyltransferase 2519018 3964097 Rfer_2295 Rhodoferax ferrireducens T118 phosphoribosyltransferase YP_523544.1 2518494 R 338969 CDS YP_523545.1 89901074 3964098 complement(2519107..2520483) 1 NC_007908.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2520483 3964098 Rfer_2296 Rhodoferax ferrireducens T118 adenylosuccinate synthetase YP_523545.1 2519107 R 338969 CDS YP_523546.1 89901075 3964099 complement(2520508..2521656) 1 NC_007908.1 class II tRNA synthetase 2521656 3964099 Rfer_2297 Rhodoferax ferrireducens T118 class II tRNA synthetase YP_523546.1 2520508 R 338969 CDS YP_523547.1 89901076 3964100 complement(2521714..2521902) 1 NC_007908.1 hypothetical protein 2521902 3964100 Rfer_2298 Rhodoferax ferrireducens T118 hypothetical protein YP_523547.1 2521714 R 338969 CDS YP_523548.1 89901077 3964101 complement(2521920..2522819) 1 NC_007908.1 HflC protein 2522819 3964101 Rfer_2299 Rhodoferax ferrireducens T118 HflC protein YP_523548.1 2521920 R 338969 CDS YP_523549.1 89901078 3964102 complement(2522829..2524223) 1 NC_007908.1 HflK protein 2524223 3964102 Rfer_2300 Rhodoferax ferrireducens T118 HflK protein YP_523549.1 2522829 R 338969 CDS YP_523550.1 89901079 3964103 complement(2524293..2525441) 1 NC_007908.1 small GTP-binding protein domain-containing protein 2525441 3964103 Rfer_2301 Rhodoferax ferrireducens T118 small GTP-binding protein domain-containing protein YP_523550.1 2524293 R 338969 CDS YP_523551.1 89901080 3964104 complement(2525419..2525667) 1 NC_007908.1 host factor Hfq 2525667 3964104 Rfer_2302 Rhodoferax ferrireducens T118 host factor Hfq YP_523551.1 2525419 R 338969 CDS YP_523552.1 89901081 3964105 complement(2525837..2527180) 1 NC_007908.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2527180 engA 3964105 engA Rhodoferax ferrireducens T118 GTP-binding protein EngA YP_523552.1 2525837 R 338969 CDS YP_523553.1 89901082 3964106 complement(2527198..2528337) 1 NC_007908.1 Pyrrolo-quinoline quinone 2528337 3964106 Rfer_2304 Rhodoferax ferrireducens T118 Pyrrolo-quinoline quinone YP_523553.1 2527198 R 338969 CDS YP_523554.1 89901083 3964107 complement(2528334..2529056) 1 NC_007908.1 hypothetical protein 2529056 3964107 Rfer_2305 Rhodoferax ferrireducens T118 hypothetical protein YP_523554.1 2528334 R 338969 CDS YP_523555.1 89901084 3964108 complement(2529071..2530384) 1 NC_007908.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2530384 hisS 3964108 hisS Rhodoferax ferrireducens T118 histidyl-tRNA synthetase YP_523555.1 2529071 R 338969 CDS YP_523556.1 89901085 3964109 complement(2530393..2531667) 1 NC_007908.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2531667 ispG 3964109 ispG Rhodoferax ferrireducens T118 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_523556.1 2530393 R 338969 CDS YP_523557.1 89901086 3964110 complement(2531667..2532605) 1 NC_007908.1 hypothetical protein 2532605 3964110 Rfer_2308 Rhodoferax ferrireducens T118 hypothetical protein YP_523557.1 2531667 R 338969 CDS YP_523558.1 89901087 3964111 complement(2532598..2533434) 1 NC_007908.1 hypothetical protein 2533434 3964111 Rfer_2309 Rhodoferax ferrireducens T118 hypothetical protein YP_523558.1 2532598 R 338969 CDS YP_523559.1 89901088 3964112 complement(2533438..2534586) 1 NC_007908.1 hypothetical protein 2534586 3964112 Rfer_2310 Rhodoferax ferrireducens T118 hypothetical protein YP_523559.1 2533438 R 338969 CDS YP_523560.1 89901089 3964113 complement(2534668..2535093) 1 NC_007908.1 nucleoside-diphosphate kinase 2535093 3964113 Rfer_2311 Rhodoferax ferrireducens T118 nucleoside-diphosphate kinase YP_523560.1 2534668 R 338969 CDS YP_523561.1 89901090 3964114 complement(2535152..2536552) 1 NC_007908.1 pseudouridine synthase Rsu 2536552 3964114 Rfer_2312 Rhodoferax ferrireducens T118 pseudouridine synthase Rsu YP_523561.1 2535152 R 338969 CDS YP_523562.1 89901091 3964308 complement(2536549..2537241) 1 NC_007908.1 putative transcriptional regulator 2537241 3964308 Rfer_2313 Rhodoferax ferrireducens T118 putative transcriptional regulator YP_523562.1 2536549 R 338969 CDS YP_523563.1 89901092 3964309 complement(2537371..2538375) 1 NC_007908.1 pseudouridine synthase RluD 2538375 3964309 Rfer_2314 Rhodoferax ferrireducens T118 pseudouridine synthase RluD YP_523563.1 2537371 R 338969 CDS YP_523564.1 89901093 3964310 2538396..2539202 1 NC_007908.1 hypothetical protein 2539202 3964310 Rfer_2315 Rhodoferax ferrireducens T118 hypothetical protein YP_523564.1 2538396 D 338969 CDS YP_523565.1 89901094 3964311 complement(2539165..2541177) 1 NC_007908.1 helicase c2 2541177 3964311 Rfer_2316 Rhodoferax ferrireducens T118 helicase c2 YP_523565.1 2539165 R 338969 CDS YP_523566.1 89901095 3964312 2541381..2542142 1 NC_007908.1 protein serine/threonine phosphatase 2542142 3964312 Rfer_2317 Rhodoferax ferrireducens T118 protein serine/threonine phosphatase YP_523566.1 2541381 D 338969 CDS YP_523567.1 89901096 3964313 complement(2542192..2543289) 1 NC_007908.1 AFG1-like protein ATPase 2543289 3964313 Rfer_2318 Rhodoferax ferrireducens T118 AFG1-like protein ATPase YP_523567.1 2542192 R 338969 CDS YP_523568.1 89901097 3964314 complement(2543370..2544797) 1 NC_007908.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2544797 3964314 Rfer_2319 Rhodoferax ferrireducens T118 dihydrolipoamide dehydrogenase YP_523568.1 2543370 R 338969 CDS YP_523569.1 89901098 3964315 complement(2544880..2546142) 1 NC_007908.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 2546142 3964315 Rfer_2320 Rhodoferax ferrireducens T118 dihydrolipoamide succinyltransferase YP_523569.1 2544880 R 338969 CDS YP_523570.1 89901099 3964316 complement(2546160..2549051) 1 NC_007908.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2549051 sucA 3964316 sucA Rhodoferax ferrireducens T118 2-oxoglutarate dehydrogenase E1 component YP_523570.1 2546160 R 338969 CDS YP_523571.1 89901100 3964317 complement(2549246..2551141) 1 NC_007908.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 2551141 prpE 3964317 prpE Rhodoferax ferrireducens T118 propionyl-CoA synthetase YP_523571.1 2549246 R 338969 CDS YP_523572.1 89901101 3964318 complement(2551396..2551998) 1 NC_007908.1 isochorismatase hydrolase 2551998 3964318 Rfer_2323 Rhodoferax ferrireducens T118 isochorismatase hydrolase YP_523572.1 2551396 R 338969 CDS YP_523573.1 89901102 3964319 2552272..2553306 1 NC_007908.1 extracellular solute-binding protein 2553306 3964319 Rfer_2324 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_523573.1 2552272 D 338969 CDS YP_523574.1 89901103 3964320 2553435..2554610 1 NC_007908.1 amino acid ABC transporter permease 2554610 3964320 Rfer_2325 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_523574.1 2553435 D 338969 CDS YP_523575.1 89901104 3964321 2554626..2555729 1 NC_007908.1 amino acid ABC transporter permease 2555729 3964321 Rfer_2326 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_523575.1 2554626 D 338969 CDS YP_523576.1 89901105 3964322 2555757..2556515 1 NC_007908.1 ABC transporter-like protein 2556515 3964322 Rfer_2327 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523576.1 2555757 D 338969 CDS YP_523577.1 89901106 3964323 complement(2556650..2557690) 1 NC_007908.1 AraC family transcriptional regulator 2557690 3964323 Rfer_2328 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_523577.1 2556650 R 338969 CDS YP_523578.1 89901107 3964324 complement(2557778..2559076) 1 NC_007908.1 hydroxypyruvate reductase 2559076 3964324 Rfer_2329 Rhodoferax ferrireducens T118 hydroxypyruvate reductase YP_523578.1 2557778 R 338969 CDS YP_523579.1 89901108 3964325 complement(2559166..2559978) 1 NC_007908.1 hypothetical protein 2559978 3964325 Rfer_2330 Rhodoferax ferrireducens T118 hypothetical protein YP_523579.1 2559166 R 338969 CDS YP_523580.1 89901109 3964326 complement(2560243..2561235) 1 NC_007908.1 lipolytic enzyme, G-D-S-L 2561235 3964326 Rfer_2331 Rhodoferax ferrireducens T118 lipolytic enzyme, G-D-S-L YP_523580.1 2560243 R 338969 CDS YP_523581.1 89901110 3962665 2561655..2563271 1 NC_007908.1 FAD linked oxidase-like protein 2563271 3962665 Rfer_2332 Rhodoferax ferrireducens T118 FAD linked oxidase-like protein YP_523581.1 2561655 D 338969 CDS YP_523582.1 89901111 3962666 2563259..2564899 1 NC_007908.1 FAD dependent oxidoreductase 2564899 3962666 Rfer_2333 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_523582.1 2563259 D 338969 CDS YP_523583.1 89901112 3962667 2564906..2566465 1 NC_007908.1 carbohydrate kinase 2566465 3962667 Rfer_2334 Rhodoferax ferrireducens T118 carbohydrate kinase YP_523583.1 2564906 D 338969 CDS YP_523584.1 89901113 3962668 complement(2566510..2567934) 1 NC_007908.1 FAD linked oxidase-like protein 2567934 3962668 Rfer_2335 Rhodoferax ferrireducens T118 FAD linked oxidase-like protein YP_523584.1 2566510 R 338969 CDS YP_523585.1 89901114 3962670 2568727..2570274 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 2570274 3962670 Rfer_2337 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_523585.1 2568727 D 338969 CDS YP_523586.1 89901115 3962671 2570346..2571695 1 NC_007908.1 hypothetical protein 2571695 3962671 Rfer_2338 Rhodoferax ferrireducens T118 hypothetical protein YP_523586.1 2570346 D 338969 CDS YP_523587.1 89901116 3962672 complement(2571696..2572553) 1 NC_007908.1 extradiol ring-cleavage dioxygenase III subunit B 2572553 3962672 Rfer_2339 Rhodoferax ferrireducens T118 extradiol ring-cleavage dioxygenase III subunit B YP_523587.1 2571696 R 338969 CDS YP_523588.1 89901117 3962673 2572796..2574193 1 NC_007908.1 polyhydroxyalkanoate depolymerase 2574193 3962673 Rfer_2340 Rhodoferax ferrireducens T118 polyhydroxyalkanoate depolymerase YP_523588.1 2572796 D 338969 CDS YP_523589.1 89901118 3962674 2574193..2574891 1 NC_007908.1 RnfABCDGE type electron transport complex subunit B 2574891 3962674 Rfer_2341 Rhodoferax ferrireducens T118 RnfABCDGE type electron transport complex subunit B YP_523589.1 2574193 D 338969 CDS YP_523590.1 89901119 3962675 complement(2574888..2576414) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 2576414 3962675 Rfer_2342 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523590.1 2574888 R 338969 CDS YP_523591.1 89901120 3962676 complement(2576607..2576921) 1 NC_007908.1 transport protein 2576921 3962676 Rfer_2343 Rhodoferax ferrireducens T118 transport protein YP_523591.1 2576607 R 338969 CDS YP_523592.1 89901121 3962677 complement(2577161..2577565) 1 NC_007908.1 hypothetical protein 2577565 3962677 Rfer_2344 Rhodoferax ferrireducens T118 hypothetical protein YP_523592.1 2577161 R 338969 CDS YP_523593.1 89901122 3962678 2577798..2579336 1 NC_007908.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2579336 3962678 Rfer_2345 Rhodoferax ferrireducens T118 2-isopropylmalate synthase YP_523593.1 2577798 D 338969 CDS YP_523594.1 89901123 3962679 2579493..2580533 1 NC_007908.1 Serine-type D-Ala-D-Ala carboxypeptidase 2580533 3962679 Rfer_2346 Rhodoferax ferrireducens T118 Serine-type D-Ala-D-Ala carboxypeptidase YP_523594.1 2579493 D 338969 CDS YP_523595.1 89901124 3962680 complement(2580545..2581336) 1 NC_007908.1 IclR family transcriptional regulator 2581336 3962680 Rfer_2347 Rhodoferax ferrireducens T118 IclR family transcriptional regulator YP_523595.1 2580545 R 338969 CDS YP_523596.1 89901125 3962681 complement(2581416..2582177) 1 NC_007908.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2582177 3962681 Rfer_2348 Rhodoferax ferrireducens T118 arginyl-tRNA-protein transferase YP_523596.1 2581416 R 338969 CDS YP_523597.1 89901126 3962682 complement(2582188..2582952) 1 NC_007908.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2582952 aat 3962682 aat Rhodoferax ferrireducens T118 leucyl/phenylalanyl-tRNA--protein transferase YP_523597.1 2582188 R 338969 CDS YP_523598.1 89901127 3961485 complement(2583144..2584691) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 2584691 3961485 Rfer_2350 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523598.1 2583144 R 338969 CDS YP_523599.1 89901128 3961486 2584935..2586092 1 NC_007908.1 L-lactate dehydrogenase (cytochrome) 2586092 3961486 Rfer_2351 Rhodoferax ferrireducens T118 L-lactate dehydrogenase (cytochrome) YP_523599.1 2584935 D 338969 CDS YP_523600.1 89901129 3961487 complement(2586093..2588771) 1 NC_007908.1 GCN5-like protein N-acetyltransferase 2588771 3961487 Rfer_2352 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_523600.1 2586093 R 338969 CDS YP_523601.1 89901130 3961488 2588872..2590113 1 NC_007908.1 DNA-directed DNA polymerase 2590113 3961488 Rfer_2353 Rhodoferax ferrireducens T118 DNA-directed DNA polymerase YP_523601.1 2588872 D 338969 CDS YP_523602.1 89901131 3961489 2590184..2591848 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 2591848 3961489 Rfer_2354 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523602.1 2590184 D 338969 CDS YP_523603.1 89901132 3961490 2591885..2594911 1 NC_007908.1 MCP methyltransferase/methylesterase 2594911 3961490 Rfer_2355 Rhodoferax ferrireducens T118 MCP methyltransferase/methylesterase YP_523603.1 2591885 D 338969 CDS YP_523604.1 89901133 3961491 2595120..2596928 1 NC_007908.1 PAS/PAC sensor hybrid histidine kinase 2596928 3961491 Rfer_2356 Rhodoferax ferrireducens T118 PAS/PAC sensor hybrid histidine kinase YP_523604.1 2595120 D 338969 CDS YP_523605.1 89901134 3961492 2596949..2597389 1 NC_007908.1 CheB methylesterase 2597389 3961492 Rfer_2357 Rhodoferax ferrireducens T118 CheB methylesterase YP_523605.1 2596949 D 338969 CDS YP_523606.1 89901135 3961493 complement(2597466..2598284) 1 NC_007908.1 metallophosphoesterase 2598284 3961493 Rfer_2358 Rhodoferax ferrireducens T118 metallophosphoesterase YP_523606.1 2597466 R 338969 CDS YP_523607.1 89901136 3961494 complement(2598281..2599312) 1 NC_007908.1 diacylglycerol kinase 2599312 3961494 Rfer_2359 Rhodoferax ferrireducens T118 diacylglycerol kinase YP_523607.1 2598281 R 338969 CDS YP_523608.1 89901137 3961495 complement(2599339..2599641) 1 NC_007908.1 hypothetical protein 2599641 3961495 Rfer_2360 Rhodoferax ferrireducens T118 hypothetical protein YP_523608.1 2599339 R 338969 CDS YP_523609.1 89901138 3961496 complement(2599666..2600058) 1 NC_007908.1 cupin 2 protein 2600058 3961496 Rfer_2361 Rhodoferax ferrireducens T118 cupin 2 protein YP_523609.1 2599666 R 338969 CDS YP_523610.1 89901139 3961497 2600461..2602035 1 NC_007908.1 cytochrome bd ubiquinol oxidase subunit I 2602035 3961497 Rfer_2362 Rhodoferax ferrireducens T118 cytochrome bd ubiquinol oxidase subunit I YP_523610.1 2600461 D 338969 CDS YP_523611.1 89901140 3961498 2602046..2603182 1 NC_007908.1 cytochrome d ubiquinol oxidase subunit II 2603182 3961498 Rfer_2363 Rhodoferax ferrireducens T118 cytochrome d ubiquinol oxidase subunit II YP_523611.1 2602046 D 338969 CDS YP_523612.1 89901141 3961499 2603197..2603313 1 NC_007908.1 Cyd operon protein YbgT 2603313 3961499 Rfer_2364 Rhodoferax ferrireducens T118 Cyd operon protein YbgT YP_523612.1 2603197 D 338969 CDS YP_523613.1 89901142 3961500 complement(2603365..2604777) 1 NC_007908.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2604777 fumC 3961500 fumC Rhodoferax ferrireducens T118 fumarate hydratase YP_523613.1 2603365 R 338969 CDS YP_523614.1 89901143 3961501 complement(2604809..2607745) 1 NC_007908.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2607745 3961501 Rfer_2366 Rhodoferax ferrireducens T118 aconitate hydratase YP_523614.1 2604809 R 338969 CDS YP_523615.1 89901144 3961502 complement(2607911..2608471) 1 NC_007908.1 hypothetical protein 2608471 3961502 Rfer_2367 Rhodoferax ferrireducens T118 hypothetical protein YP_523615.1 2607911 R 338969 CDS YP_523616.1 89901145 3961503 2608721..2609272 1 NC_007908.1 NADPH-dependent FMN reductase 2609272 3961503 Rfer_2368 Rhodoferax ferrireducens T118 NADPH-dependent FMN reductase YP_523616.1 2608721 D 338969 CDS YP_523617.1 89901146 3962819 2609361..2609717 1 NC_007908.1 hypothetical protein 2609717 3962819 Rfer_2369 Rhodoferax ferrireducens T118 hypothetical protein YP_523617.1 2609361 D 338969 CDS YP_523618.1 89901147 3962820 complement(2609792..2610661) 1 NC_007908.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2610661 queF 3962820 queF Rhodoferax ferrireducens T118 7-cyano-7-deazaguanine reductase YP_523618.1 2609792 R 338969 CDS YP_523619.1 89901148 3962821 complement(2610703..2611626) 1 NC_007908.1 alpha/beta hydrolase 2611626 3962821 Rfer_2371 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_523619.1 2610703 R 338969 CDS YP_523620.1 89901149 3962822 complement(2611676..2612455) 1 NC_007908.1 hypothetical protein 2612455 3962822 Rfer_2372 Rhodoferax ferrireducens T118 hypothetical protein YP_523620.1 2611676 R 338969 CDS YP_523621.1 89901150 3962823 complement(2612542..2613132) 1 NC_007908.1 hypothetical protein 2613132 3962823 Rfer_2373 Rhodoferax ferrireducens T118 hypothetical protein YP_523621.1 2612542 R 338969 CDS YP_523622.1 89901151 3962824 complement(2613308..2614708) 1 NC_007908.1 putative ferredoxin 2614708 3962824 Rfer_2374 Rhodoferax ferrireducens T118 putative ferredoxin YP_523622.1 2613308 R 338969 CDS YP_523623.1 89901152 3962825 complement(2614752..2615174) 1 NC_007908.1 rubrerythrin 2615174 3962825 Rfer_2375 Rhodoferax ferrireducens T118 rubrerythrin YP_523623.1 2614752 R 338969 CDS YP_523624.1 89901153 3962826 2615474..2618446 1 NC_007908.1 valyl-tRNA synthetase 2618446 3962826 Rfer_2376 Rhodoferax ferrireducens T118 valyl-tRNA synthetase YP_523624.1 2615474 D 338969 CDS YP_523625.1 89901154 3962827 complement(2618482..2618709) 1 NC_007908.1 SirA-like protein 2618709 3962827 Rfer_2377 Rhodoferax ferrireducens T118 SirA-like protein YP_523625.1 2618482 R 338969 CDS YP_523626.1 89901155 3962828 complement(2618753..2619655) 1 NC_007908.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2619655 cysM 3962828 cysM Rhodoferax ferrireducens T118 cysteine synthase B YP_523626.1 2618753 R 338969 CDS YP_523627.1 89901156 3962830 complement(2619845..2620237) 1 NC_007908.1 glutaredoxin family protein 2620237 3962830 Rfer_2379 Rhodoferax ferrireducens T118 glutaredoxin family protein YP_523627.1 2619845 R 338969 CDS YP_523628.1 89901157 3962831 2620344..2621378 1 NC_007908.1 isocitrate dehydrogenase 2621378 3962831 Rfer_2380 Rhodoferax ferrireducens T118 isocitrate dehydrogenase YP_523628.1 2620344 D 338969 CDS YP_523629.1 89901158 3962832 complement(2621411..2622205) 1 NC_007908.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 2622205 aroD 3962832 aroD Rhodoferax ferrireducens T118 3-dehydroquinate dehydratase YP_523629.1 2621411 R 338969 CDS YP_523630.1 89901159 3962833 complement(2622437..2623306) 1 NC_007908.1 4-hydroxybenzoyl-CoA thioesterase 2623306 3962833 Rfer_2382 Rhodoferax ferrireducens T118 4-hydroxybenzoyl-CoA thioesterase YP_523630.1 2622437 R 338969 CDS YP_523631.1 89901160 3962834 complement(2623299..2624282) 1 NC_007908.1 alpha/beta hydrolase fold-3 protein 2624282 3962834 Rfer_2383 Rhodoferax ferrireducens T118 alpha/beta hydrolase fold-3 protein YP_523631.1 2623299 R 338969 CDS YP_523632.1 89901161 3962835 complement(2624361..2626217) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 2626217 3962835 Rfer_2384 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_523632.1 2624361 R 338969 CDS YP_523633.1 89901162 3962836 complement(2626300..2627514) 1 NC_007908.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2627514 3962836 Rfer_2385 Rhodoferax ferrireducens T118 acetyl-CoA acetyltransferase YP_523633.1 2626300 R 338969 CDS YP_523634.1 89901163 3962837 complement(2627546..2629645) 1 NC_007908.1 3-hydroxyacyl-CoA dehydrogenase 2629645 3962837 Rfer_2386 Rhodoferax ferrireducens T118 3-hydroxyacyl-CoA dehydrogenase YP_523634.1 2627546 R 338969 CDS YP_523635.1 89901164 3962057 complement(2629751..2630446) 1 NC_007908.1 ABC transporter-like protein 2630446 3962057 Rfer_2387 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523635.1 2629751 R 338969 CDS YP_523636.1 89901165 3962058 complement(2630440..2631219) 1 NC_007908.1 ABC transporter-like protein 2631219 3962058 Rfer_2388 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523636.1 2630440 R 338969 CDS YP_523637.1 89901166 3962059 complement(2631216..2632505) 1 NC_007908.1 inner-membrane translocator 2632505 3962059 Rfer_2389 Rhodoferax ferrireducens T118 inner-membrane translocator YP_523637.1 2631216 R 338969 CDS YP_523638.1 89901167 3962060 complement(2632509..2633456) 1 NC_007908.1 inner-membrane translocator 2633456 3962060 Rfer_2390 Rhodoferax ferrireducens T118 inner-membrane translocator YP_523638.1 2632509 R 338969 CDS YP_523639.1 89901168 3962061 complement(2633597..2634832) 1 NC_007908.1 extracellular ligand-binding receptor 2634832 3962061 Rfer_2391 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_523639.1 2633597 R 338969 CDS YP_523640.1 89901169 3962062 complement(2634884..2636119) 1 NC_007908.1 extracellular ligand-binding receptor 2636119 3962062 Rfer_2392 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_523640.1 2634884 R 338969 CDS YP_523641.1 89901170 3962063 complement(2636240..2637868) 1 NC_007908.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2637868 3962063 Rfer_2393 Rhodoferax ferrireducens T118 long-chain-fatty-acid--CoA ligase YP_523641.1 2636240 R 338969 CDS YP_523642.1 89901171 3962064 2638030..2638797 1 NC_007908.1 Crp/FNR family transcriptional regulator 2638797 3962064 Rfer_2394 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_523642.1 2638030 D 338969 CDS YP_523643.1 89901172 3962065 2638881..2640371 1 NC_007908.1 hypothetical protein 2640371 3962065 Rfer_2395 Rhodoferax ferrireducens T118 hypothetical protein YP_523643.1 2638881 D 338969 CDS YP_523644.1 89901173 3962066 2640437..2640859 1 NC_007908.1 protein-methionine-S-oxide reductase 2640859 3962066 Rfer_2396 Rhodoferax ferrireducens T118 protein-methionine-S-oxide reductase YP_523644.1 2640437 D 338969 CDS YP_523645.1 89901174 3962067 2640843..2641382 1 NC_007908.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2641382 3962067 Rfer_2397 Rhodoferax ferrireducens T118 intracellular septation protein A YP_523645.1 2640843 D 338969 CDS YP_523646.1 89901175 3962068 2641406..2641699 1 NC_007908.1 BolA-like protein 2641699 3962068 Rfer_2398 Rhodoferax ferrireducens T118 BolA-like protein YP_523646.1 2641406 D 338969 CDS YP_523647.1 89901176 3962069 2641733..2642518 1 NC_007908.1 PpiC-type peptidyl-prolyl cis-trans isomerase 2642518 3962069 Rfer_2399 Rhodoferax ferrireducens T118 PpiC-type peptidyl-prolyl cis-trans isomerase YP_523647.1 2641733 D 338969 CDS YP_523648.1 89901177 3962070 complement(2642854..2644269) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 2644269 3962070 Rfer_2400 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_523648.1 2642854 R 338969 CDS YP_523649.1 89901178 3962071 complement(2644256..2644939) 1 NC_007908.1 two component transcriptional regulator 2644939 3962071 Rfer_2401 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_523649.1 2644256 R 338969 CDS YP_523650.1 89901179 3962072 2644952..2646049 1 NC_007908.1 hypothetical protein 2646049 3962072 Rfer_2402 Rhodoferax ferrireducens T118 hypothetical protein YP_523650.1 2644952 D 338969 CDS YP_523651.1 89901180 3962073 2646095..2647099 1 NC_007908.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 2647099 3962073 Rfer_2403 Rhodoferax ferrireducens T118 malate dehydrogenase YP_523651.1 2646095 D 338969 CDS YP_523652.1 89901181 3962074 complement(2647079..2647684) 1 NC_007908.1 hypothetical protein 2647684 3962074 Rfer_2404 Rhodoferax ferrireducens T118 hypothetical protein YP_523652.1 2647079 R 338969 CDS YP_523653.1 89901182 3962075 complement(2647695..2648603) 1 NC_007908.1 triphosphoribosyl-dephospho-CoA synthase 2648603 3962075 Rfer_2405 Rhodoferax ferrireducens T118 triphosphoribosyl-dephospho-CoA synthase YP_523653.1 2647695 R 338969 CDS YP_523654.1 89901183 3961233 complement(2648575..2649126) 1 NC_007908.1 Holo-citrate lyase synthase 2649126 3961233 Rfer_2406 Rhodoferax ferrireducens T118 Holo-citrate lyase synthase YP_523654.1 2648575 R 338969 CDS YP_523655.1 89901184 3961234 complement(2649128..2650666) 1 NC_007908.1 citrate lyase subunit alpha 2650666 3961234 Rfer_2407 Rhodoferax ferrireducens T118 citrate lyase subunit alpha YP_523655.1 2649128 R 338969 CDS YP_523656.1 89901185 3961235 complement(2650686..2651558) 1 NC_007908.1 citrate lyase subunit beta 2651558 3961235 Rfer_2408 Rhodoferax ferrireducens T118 citrate lyase subunit beta YP_523656.1 2650686 R 338969 CDS YP_523657.1 89901186 3961236 complement(2651555..2651851) 1 NC_007908.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 2651851 3961236 Rfer_2409 Rhodoferax ferrireducens T118 citrate lyase subunit gamma YP_523657.1 2651555 R 338969 CDS YP_523658.1 89901187 3961237 complement(2651897..2652991) 1 NC_007908.1 citrate lyase ligase 2652991 3961237 Rfer_2410 Rhodoferax ferrireducens T118 citrate lyase ligase YP_523658.1 2651897 R 338969 CDS YP_523659.1 89901188 3961238 complement(2653021..2654058) 1 NC_007908.1 isocitrate dehydrogenase 2654058 3961238 Rfer_2411 Rhodoferax ferrireducens T118 isocitrate dehydrogenase YP_523659.1 2653021 R 338969 CDS YP_523660.1 89901189 3961239 complement(2654069..2655514) 1 NC_007908.1 anion transporter 2655514 3961239 Rfer_2412 Rhodoferax ferrireducens T118 anion transporter YP_523660.1 2654069 R 338969 CDS YP_523661.1 89901190 3961240 complement(2655999..2656775) 1 NC_007908.1 hypothetical protein 2656775 3961240 Rfer_2413 Rhodoferax ferrireducens T118 hypothetical protein YP_523661.1 2655999 R 338969 CDS YP_523662.1 89901191 3961241 2656842..2658860 1 NC_007908.1 peptidase U32 2658860 3961241 Rfer_2414 Rhodoferax ferrireducens T118 peptidase U32 YP_523662.1 2656842 D 338969 CDS YP_523663.1 89901192 3961242 2658969..2659502 1 NC_007908.1 hypothetical protein 2659502 3961242 Rfer_2415 Rhodoferax ferrireducens T118 hypothetical protein YP_523663.1 2658969 D 338969 CDS YP_523664.1 89901193 3961243 2659510..2660574 1 NC_007908.1 alpha/beta hydrolase fold-3 protein 2660574 3961243 Rfer_2416 Rhodoferax ferrireducens T118 alpha/beta hydrolase fold-3 protein YP_523664.1 2659510 D 338969 CDS YP_523665.1 89901194 3961244 complement(2660841..2662085) 1 NC_007908.1 cyclopropane-fatty-acyl-phospholipid synthase 2662085 3961244 Rfer_2417 Rhodoferax ferrireducens T118 cyclopropane-fatty-acyl-phospholipid synthase YP_523665.1 2660841 R 338969 CDS YP_523666.1 89901195 3961245 2662350..2664200 1 NC_007908.1 ATP-dependent metalloprotease FtsH 2664200 3961245 Rfer_2418 Rhodoferax ferrireducens T118 ATP-dependent metalloprotease FtsH YP_523666.1 2662350 D 338969 CDS YP_523667.1 89901196 3961246 complement(2664181..2665086) 1 NC_007908.1 ribonuclease BN 2665086 3961246 Rfer_2419 Rhodoferax ferrireducens T118 ribonuclease BN YP_523667.1 2664181 R 338969 CDS YP_523668.1 89901197 3961247 complement(2665130..2669359) 1 NC_007908.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2669359 3961247 Rfer_2420 Rhodoferax ferrireducens T118 phosphoribosylformylglycinamidine synthase YP_523668.1 2665130 R 338969 CDS YP_523669.1 89901198 3961248 2669448..2670275 1 NC_007908.1 methionine aminopeptidase 2670275 3961248 Rfer_2421 Rhodoferax ferrireducens T118 methionine aminopeptidase YP_523669.1 2669448 D 338969 CDS YP_523670.1 89901199 3961249 2670328..2672919 1 NC_007908.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 2672919 3961249 Rfer_2422 Rhodoferax ferrireducens T118 PII uridylyl-transferase YP_523670.1 2670328 D 338969 CDS YP_523671.1 89901200 3961250 complement(2672948..2674009) 1 NC_007908.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2674009 3961250 Rfer_2423 Rhodoferax ferrireducens T118 tRNA 2-selenouridine synthase YP_523671.1 2672948 R 338969 CDS YP_523672.1 89901201 3961251 complement(2674009..2674545) 1 NC_007908.1 lipolytic enzyme, G-D-S-L 2674545 3961251 Rfer_2424 Rhodoferax ferrireducens T118 lipolytic enzyme, G-D-S-L YP_523672.1 2674009 R 338969 CDS YP_523673.1 89901202 3961252 2674691..2675377 1 NC_007908.1 ABC transporter-like protein 2675377 3961252 Rfer_2425 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523673.1 2674691 D 338969 CDS YP_523674.1 89901203 3961038 complement(2675605..2676420) 1 NC_007908.1 mechanosensitive ion channel protein MscS 2676420 3961038 Rfer_2426 Rhodoferax ferrireducens T118 mechanosensitive ion channel protein MscS YP_523674.1 2675605 R 338969 CDS YP_523675.1 89901204 3961039 complement(2676673..2677347) 1 NC_007908.1 hypothetical protein 2677347 3961039 Rfer_2427 Rhodoferax ferrireducens T118 hypothetical protein YP_523675.1 2676673 R 338969 CDS YP_523676.1 89901205 3961040 complement(2677476..2677904) 1 NC_007908.1 large conductance mechanosensitive channel protein 2677904 3961040 Rfer_2428 Rhodoferax ferrireducens T118 large conductance mechanosensitive channel protein YP_523676.1 2677476 R 338969 CDS YP_523677.1 89901206 3961041 2678143..2678559 1 NC_007908.1 hypothetical protein 2678559 3961041 Rfer_2429 Rhodoferax ferrireducens T118 hypothetical protein YP_523677.1 2678143 D 338969 CDS YP_523678.1 89901207 3961042 complement(2678686..2679015) 1 NC_007908.1 hypothetical protein 2679015 3961042 Rfer_2430 Rhodoferax ferrireducens T118 hypothetical protein YP_523678.1 2678686 R 338969 CDS YP_523679.1 89901208 3961043 2679279..2679713 1 NC_007908.1 integral membrane protein-like protein 2679713 3961043 Rfer_2431 Rhodoferax ferrireducens T118 integral membrane protein-like protein YP_523679.1 2679279 D 338969 CDS YP_523680.1 89901209 3961044 2680105..2680710 1 NC_007908.1 cytochrome B561 2680710 3961044 Rfer_2432 Rhodoferax ferrireducens T118 cytochrome B561 YP_523680.1 2680105 D 338969 CDS YP_523681.1 89901210 3961045 complement(2680692..2681144) 1 NC_007908.1 transposase, IS4 2681144 3961045 Rfer_2433 Rhodoferax ferrireducens T118 transposase, IS4 YP_523681.1 2680692 R 338969 CDS YP_523682.1 89901211 3961046 2681618..2682361 1 NC_007908.1 NAD(P)H dehydrogenase (quinone) 2682361 3961046 Rfer_2434 Rhodoferax ferrireducens T118 NAD(P)H dehydrogenase (quinone) YP_523682.1 2681618 D 338969 CDS YP_523683.1 89901212 3961047 2682429..2682800 1 NC_007908.1 hypothetical protein 2682800 3961047 Rfer_2435 Rhodoferax ferrireducens T118 hypothetical protein YP_523683.1 2682429 D 338969 CDS YP_523684.1 89901213 3961048 2682854..2683306 1 NC_007908.1 pyridoxamine 5'-phosphate oxidase-like protein 2683306 3961048 Rfer_2436 Rhodoferax ferrireducens T118 pyridoxamine 5'-phosphate oxidase-like protein YP_523684.1 2682854 D 338969 CDS YP_523685.1 89901214 3961049 complement(2683562..2684257) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 2684257 3961049 Rfer_2437 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_523685.1 2683562 R 338969 CDS YP_523686.1 89901215 3961050 complement(2684791..2685765) 1 NC_007908.1 LysR family transcriptional regulator 2685765 3961050 Rfer_2438 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_523686.1 2684791 R 338969 CDS YP_523687.1 89901216 3961051 2685962..2687023 1 NC_007908.1 zinc-binding alcohol dehydrogenase 2687023 3961051 Rfer_2439 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_523687.1 2685962 D 338969 CDS YP_523688.1 89901217 3961052 2687020..2687604 1 NC_007908.1 NAD-dependent epimerase/dehydratase 2687604 3961052 Rfer_2440 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_523688.1 2687020 D 338969 CDS YP_523689.1 89901218 3961053 2687634..2688464 1 NC_007908.1 carboxymuconolactone decarboxylase 2688464 3961053 Rfer_2441 Rhodoferax ferrireducens T118 carboxymuconolactone decarboxylase YP_523689.1 2687634 D 338969 CDS YP_523690.1 89901219 3961054 2688495..2689613 1 NC_007908.1 hypothetical protein 2689613 3961054 Rfer_2442 Rhodoferax ferrireducens T118 hypothetical protein YP_523690.1 2688495 D 338969 CDS YP_523691.1 89901220 3961055 2689645..2691090 1 NC_007908.1 major facilitator transporter 2691090 3961055 Rfer_2443 Rhodoferax ferrireducens T118 major facilitator transporter YP_523691.1 2689645 D 338969 CDS YP_523692.1 89901221 3961056 2691119..2692114 1 NC_007908.1 aldo/keto reductase 2692114 3961056 Rfer_2444 Rhodoferax ferrireducens T118 aldo/keto reductase YP_523692.1 2691119 D 338969 CDS YP_523693.1 89901222 3960372 2692154..2693137 1 NC_007908.1 aldo/keto reductase 2693137 3960372 Rfer_2445 Rhodoferax ferrireducens T118 aldo/keto reductase YP_523693.1 2692154 D 338969 CDS YP_523694.1 89901223 3960373 2693511..2694461 1 NC_007908.1 chromate resistance exported protein 2694461 3960373 Rfer_2446 Rhodoferax ferrireducens T118 chromate resistance exported protein YP_523694.1 2693511 D 338969 CDS YP_523695.1 89901224 3960374 2694448..2695641 1 NC_007908.1 chromate transporter 2695641 3960374 Rfer_2447 Rhodoferax ferrireducens T118 chromate transporter YP_523695.1 2694448 D 338969 CDS YP_523696.1 89901225 3960375 2695657..2696028 1 NC_007908.1 rhodanese-like protein 2696028 3960375 Rfer_2448 Rhodoferax ferrireducens T118 rhodanese-like protein YP_523696.1 2695657 D 338969 CDS YP_523697.1 89901226 3960376 2695988..2696269 1 NC_007908.1 hypothetical protein 2696269 3960376 Rfer_2449 Rhodoferax ferrireducens T118 hypothetical protein YP_523697.1 2695988 D 338969 CDS YP_523698.1 89901227 3960377 complement(2696940..2697140) 1 NC_007908.1 hypothetical protein 2697140 3960377 Rfer_2450 Rhodoferax ferrireducens T118 hypothetical protein YP_523698.1 2696940 R 338969 CDS YP_523699.1 89901228 3960378 complement(2697142..2699202) 1 NC_007908.1 carbon starvation protein CstA 2699202 3960378 Rfer_2451 Rhodoferax ferrireducens T118 carbon starvation protein CstA YP_523699.1 2697142 R 338969 CDS YP_523700.1 89901229 3960379 complement(2699474..2700190) 1 NC_007908.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2700190 3960379 Rfer_2452 Rhodoferax ferrireducens T118 putative two-component response-regulatory protein YehT YP_523700.1 2699474 R 338969 CDS YP_523701.1 89901230 3960380 complement(2700184..2701890) 1 NC_007908.1 histidine kinase internal protein 2701890 3960380 Rfer_2453 Rhodoferax ferrireducens T118 histidine kinase internal protein YP_523701.1 2700184 R 338969 CDS YP_523702.1 89901231 3960381 2702411..2702800 1 NC_007908.1 hypothetical protein 2702800 3960381 Rfer_2454 Rhodoferax ferrireducens T118 hypothetical protein YP_523702.1 2702411 D 338969 CDS YP_523703.1 89901232 3960383 2703177..2703968 1 NC_007908.1 hypothetical protein 2703968 3960383 Rfer_2455 Rhodoferax ferrireducens T118 hypothetical protein YP_523703.1 2703177 D 338969 CDS YP_523704.1 89901233 3960384 2704032..2705849 1 NC_007908.1 nitrite and sulfite reductase 4Fe-4S protein 2705849 3960384 Rfer_2456 Rhodoferax ferrireducens T118 nitrite and sulfite reductase 4Fe-4S protein YP_523704.1 2704032 D 338969 CDS YP_523705.1 89901234 3960385 2705862..2706302 1 NC_007908.1 hypothetical protein 2706302 3960385 Rfer_2457 Rhodoferax ferrireducens T118 hypothetical protein YP_523705.1 2705862 D 338969 CDS YP_523706.1 89901235 3960386 2706289..2707050 1 NC_007908.1 phosphoadenylyl-sulfate reductase 2707050 3960386 Rfer_2458 Rhodoferax ferrireducens T118 phosphoadenylyl-sulfate reductase YP_523706.1 2706289 D 338969 CDS YP_523707.1 89901236 3960387 2707047..2708018 1 NC_007908.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2708018 3960387 Rfer_2459 Rhodoferax ferrireducens T118 sulfate adenylyltransferase subunit 2 YP_523707.1 2707047 D 338969 CDS YP_523708.1 89901237 3960388 2708018..2709430 1 NC_007908.1 Sulfate adenylyltransferase large subunit 2709430 3960388 Rfer_2460 Rhodoferax ferrireducens T118 Sulfate adenylyltransferase large subunit YP_523708.1 2708018 D 338969 CDS YP_523709.1 89901238 3960389 2709534..2709863 1 NC_007908.1 4Fe-4S ferredoxin 2709863 3960389 Rfer_2461 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_523709.1 2709534 D 338969 CDS YP_523710.1 89901239 3960390 2709871..2710935 1 NC_007908.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2710935 3960390 Rfer_2462 Rhodoferax ferrireducens T118 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_523710.1 2709871 D 338969 CDS YP_523711.1 89901240 3960278 2711156..2712463 1 NC_007908.1 cytosine/purines, uracil, thiamine, allantoin permease 2712463 3960278 Rfer_2463 Rhodoferax ferrireducens T118 cytosine/purines, uracil, thiamine, allantoin permease YP_523711.1 2711156 D 338969 CDS YP_523712.1 89901241 3960279 2712460..2713536 1 NC_007908.1 FAD dependent oxidoreductase 2713536 3960279 Rfer_2464 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_523712.1 2712460 D 338969 CDS YP_523713.1 89901242 3960280 2713533..2713730 1 NC_007908.1 thiamine biosynthesis protein ThiS 2713730 3960280 Rfer_2465 Rhodoferax ferrireducens T118 thiamine biosynthesis protein ThiS YP_523713.1 2713533 D 338969 CDS YP_523714.1 89901243 3960281 2713762..2714601 1 NC_007908.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2714601 thiG 3960281 thiG Rhodoferax ferrireducens T118 thiazole synthase YP_523714.1 2713762 D 338969 CDS YP_523715.1 89901244 3960282 2714598..2715536 1 NC_007908.1 thiamine-phosphate diphosphorylase 2715536 3960282 Rfer_2467 Rhodoferax ferrireducens T118 thiamine-phosphate diphosphorylase YP_523715.1 2714598 D 338969 CDS YP_523716.1 89901245 3960283 complement(2715585..2715932) 1 NC_007908.1 class I cytochrome c 2715932 3960283 Rfer_2468 Rhodoferax ferrireducens T118 class I cytochrome c YP_523716.1 2715585 R 338969 CDS YP_523717.1 89901246 3960284 2715995..2716240 1 NC_007908.1 hypothetical protein 2716240 3960284 Rfer_2469 Rhodoferax ferrireducens T118 hypothetical protein YP_523717.1 2715995 D 338969 CDS YP_523718.1 89901247 3960285 complement(2716277..2717119) 1 NC_007908.1 phosphomethylpyrimidine kinase 2717119 3960285 Rfer_2470 Rhodoferax ferrireducens T118 phosphomethylpyrimidine kinase YP_523718.1 2716277 R 338969 CDS YP_523719.1 89901248 3960286 complement(2717148..2717807) 1 NC_007908.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 2717807 thiE 3960286 thiE Rhodoferax ferrireducens T118 thiamine-phosphate pyrophosphorylase YP_523719.1 2717148 R 338969 CDS YP_523720.1 89901249 3960287 complement(2717801..2718634) 1 NC_007908.1 hydroxyethylthiazole kinase 2718634 3960287 Rfer_2472 Rhodoferax ferrireducens T118 hydroxyethylthiazole kinase YP_523720.1 2717801 R 338969 CDS YP_523721.1 89901250 3960289 complement(2718844..2719803) 1 NC_007908.1 hypothetical protein 2719803 3960289 Rfer_2473 Rhodoferax ferrireducens T118 hypothetical protein YP_523721.1 2718844 R 338969 CDS YP_523722.1 89901251 3960290 complement(2719821..2721368) 1 NC_007908.1 hypothetical protein 2721368 3960290 Rfer_2474 Rhodoferax ferrireducens T118 hypothetical protein YP_523722.1 2719821 R 338969 CDS YP_523723.1 89901252 3960291 complement(2721515..2722885) 1 NC_007908.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 2722885 tnaA 3960291 tnaA Rhodoferax ferrireducens T118 tryptophanase YP_523723.1 2721515 R 338969 CDS YP_523724.1 89901253 3960292 complement(2722979..2725279) 1 NC_007908.1 DNA internalization-like protein competence protein ComEC/Rec2 2725279 3960292 Rfer_2476 Rhodoferax ferrireducens T118 DNA internalization-like protein competence protein ComEC/Rec2 YP_523724.1 2722979 R 338969 CDS YP_523725.1 89901254 3960293 complement(2725501..2728479) 1 NC_007908.1 hypothetical protein 2728479 3960293 Rfer_2477 Rhodoferax ferrireducens T118 hypothetical protein YP_523725.1 2725501 R 338969 CDS YP_523726.1 89901255 3960294 complement(2728586..2730343) 1 NC_007908.1 thiamine pyrophosphate enzyme-like protein 2730343 3960294 Rfer_2478 Rhodoferax ferrireducens T118 thiamine pyrophosphate enzyme-like protein YP_523726.1 2728586 R 338969 CDS YP_523727.1 89901256 3962972 complement(2730361..2732040) 1 NC_007908.1 AMP-dependent synthetase and ligase 2732040 3962972 Rfer_2479 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_523727.1 2730361 R 338969 CDS YP_523728.1 89901257 3962973 complement(2732280..2734859) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 2734859 3962973 Rfer_2480 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_523728.1 2732280 R 338969 CDS YP_523729.1 89901258 3962974 complement(2734927..2736666) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 2736666 3962974 Rfer_2481 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523729.1 2734927 R 338969 CDS YP_523730.1 89901259 3962975 complement(2736747..2737625) 1 NC_007908.1 putative signal transduction protein 2737625 3962975 Rfer_2482 Rhodoferax ferrireducens T118 putative signal transduction protein YP_523730.1 2736747 R 338969 CDS YP_523731.1 89901260 3962976 complement(2737692..2740115) 1 NC_007908.1 RNA-binding S1 2740115 3962976 Rfer_2483 Rhodoferax ferrireducens T118 RNA-binding S1 YP_523731.1 2737692 R 338969 CDS YP_523732.1 89901261 3962977 2740344..2741126 1 NC_007908.1 hypothetical protein 2741126 3962977 Rfer_2484 Rhodoferax ferrireducens T118 hypothetical protein YP_523732.1 2740344 D 338969 CDS YP_523733.1 89901262 3962978 2741667..2744621 1 NC_007908.1 diguanylate cyclase/phosphodiesterase 2744621 3962978 Rfer_2485 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_523733.1 2741667 D 338969 CDS YP_523734.1 89901263 3962979 2744961..2747111 1 NC_007908.1 histidine kinase 2747111 3962979 Rfer_2486 Rhodoferax ferrireducens T118 histidine kinase YP_523734.1 2744961 D 338969 CDS YP_523735.1 89901264 3962980 2747108..2749315 1 NC_007908.1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2749315 3962980 Rfer_2487 Rhodoferax ferrireducens T118 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523735.1 2747108 D 338969 CDS YP_523736.1 89901265 3962981 complement(2749759..2750673) 1 NC_007908.1 probable dehydrogenase; hypothetical protein 2750673 3962981 Rfer_2488 Rhodoferax ferrireducens T118 hypothetical protein YP_523736.1 2749759 R 338969 CDS YP_523737.1 89901266 3962982 complement(2750712..2751206) 1 NC_007908.1 GCN5-like protein N-acetyltransferase 2751206 3962982 Rfer_2489 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_523737.1 2750712 R 338969 CDS YP_523738.1 89901267 3962983 complement(2751203..2752144) 1 NC_007908.1 putative glutathione S-transferase-like protein 2752144 3962983 Rfer_2490 Rhodoferax ferrireducens T118 putative glutathione S-transferase-like protein YP_523738.1 2751203 R 338969 CDS YP_523739.1 89901268 3962984 complement(2752219..2753235) 1 NC_007908.1 zinc-binding alcohol dehydrogenase 2753235 3962984 Rfer_2491 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_523739.1 2752219 R 338969 CDS YP_523740.1 89901269 3962985 complement(2753333..2753773) 1 NC_007908.1 phenylacetic acid degradation-like protein 2753773 3962985 Rfer_2492 Rhodoferax ferrireducens T118 phenylacetic acid degradation-like protein YP_523740.1 2753333 R 338969 CDS YP_523741.1 89901270 3962986 complement(2753776..2754600) 1 NC_007908.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 2754600 3962986 Rfer_2493 Rhodoferax ferrireducens T118 gluconate 5-dehydrogenase YP_523741.1 2753776 R 338969 CDS YP_523742.1 89901271 3962987 2754756..2755778 1 NC_007908.1 hypothetical protein 2755778 3962987 Rfer_2494 Rhodoferax ferrireducens T118 hypothetical protein YP_523742.1 2754756 D 338969 CDS YP_523743.1 89901272 3962988 2755795..2757063 1 NC_007908.1 diguanylate cyclase 2757063 3962988 Rfer_2495 Rhodoferax ferrireducens T118 diguanylate cyclase YP_523743.1 2755795 D 338969 CDS YP_523744.1 89901273 3962989 complement(2757133..2757819) 1 NC_007908.1 CDP-diacylglycerol--serine O-phosphatidyltransferase 2757819 3962989 Rfer_2496 Rhodoferax ferrireducens T118 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_523744.1 2757133 R 338969 CDS YP_523745.1 89901274 3962990 2757894..2760509 1 NC_007908.1 hypothetical protein 2760509 3962990 Rfer_2497 Rhodoferax ferrireducens T118 hypothetical protein YP_523745.1 2757894 D 338969 CDS YP_523746.1 89901275 3962932 2760506..2761498 1 NC_007908.1 transglutaminase-like protein 2761498 3962932 Rfer_2498 Rhodoferax ferrireducens T118 transglutaminase-like protein YP_523746.1 2760506 D 338969 CDS YP_523747.1 89901276 3962933 complement(2761590..2762534) 1 NC_007908.1 hypothetical protein 2762534 3962933 Rfer_2499 Rhodoferax ferrireducens T118 hypothetical protein YP_523747.1 2761590 R 338969 CDS YP_523748.1 89901277 3962934 complement(2762538..2764010) 1 NC_007908.1 membrane bound O-acyl transferase, MBOAT 2764010 3962934 Rfer_2500 Rhodoferax ferrireducens T118 membrane bound O-acyl transferase, MBOAT YP_523748.1 2762538 R 338969 CDS YP_523749.1 89901278 3962935 complement(2764043..2764660) 1 NC_007908.1 hypothetical protein 2764660 3962935 Rfer_2501 Rhodoferax ferrireducens T118 hypothetical protein YP_523749.1 2764043 R 338969 CDS YP_523750.1 89901279 3962936 complement(2764675..2765232) 1 NC_007908.1 hypothetical protein 2765232 3962936 Rfer_2502 Rhodoferax ferrireducens T118 hypothetical protein YP_523750.1 2764675 R 338969 CDS YP_523751.1 89901280 3962937 complement(2765229..2765519) 1 NC_007908.1 hypothetical protein 2765519 3962937 Rfer_2503 Rhodoferax ferrireducens T118 hypothetical protein YP_523751.1 2765229 R 338969 CDS YP_523752.1 89901281 3962938 complement(2765519..2766508) 1 NC_007908.1 transketolase-like protein 2766508 3962938 Rfer_2504 Rhodoferax ferrireducens T118 transketolase-like protein YP_523752.1 2765519 R 338969 CDS YP_523753.1 89901282 3962939 complement(2766501..2767724) 1 NC_007908.1 twin-arginine translocation pathway signal protein 2767724 3962939 Rfer_2505 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_523753.1 2766501 R 338969 CDS YP_523754.1 89901283 3962940 2768019..2768474 1 NC_007908.1 endoribonuclease L-PSP 2768474 3962940 Rfer_2506 Rhodoferax ferrireducens T118 endoribonuclease L-PSP YP_523754.1 2768019 D 338969 CDS YP_523755.1 89901284 3962941 complement(2768641..2770410) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 2770410 3962941 Rfer_2507 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523755.1 2768641 R 338969 CDS YP_523756.1 89901285 3962942 complement(2770504..2770989) 1 NC_007908.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2770989 3962942 Rfer_2508 Rhodoferax ferrireducens T118 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_523756.1 2770504 R 338969 CDS YP_523757.1 89901286 3962943 complement(2770986..2772593) 1 NC_007908.1 poly(A) polymerase 2772593 3962943 Rfer_2509 Rhodoferax ferrireducens T118 poly(A) polymerase YP_523757.1 2770986 R 338969 CDS YP_523758.1 89901287 3962944 complement(2772740..2773414) 1 NC_007908.1 HAD family hydrolase 2773414 3962944 Rfer_2510 Rhodoferax ferrireducens T118 HAD family hydrolase YP_523758.1 2772740 R 338969 CDS YP_523759.1 89901288 3962945 complement(2773429..2774115) 1 NC_007908.1 chromosomal replication initiator DnaA 2774115 3962945 Rfer_2511 Rhodoferax ferrireducens T118 chromosomal replication initiator DnaA YP_523759.1 2773429 R 338969 CDS YP_523760.1 89901289 3962946 2774284..2775333 1 NC_007908.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2775333 3962946 Rfer_2512 Rhodoferax ferrireducens T118 phosphoribosylaminoimidazole synthetase YP_523760.1 2774284 D 338969 CDS YP_523761.1 89901290 3962947 2775357..2776538 1 NC_007908.1 major facilitator transporter 2776538 3962947 Rfer_2513 Rhodoferax ferrireducens T118 major facilitator transporter YP_523761.1 2775357 D 338969 CDS YP_523762.1 89901291 3962948 complement(2776630..2777148) 1 NC_007908.1 hypothetical protein 2777148 3962948 Rfer_2514 Rhodoferax ferrireducens T118 hypothetical protein YP_523762.1 2776630 R 338969 CDS YP_523763.1 89901292 3962949 complement(2777203..2777655) 1 NC_007908.1 hypothetical protein 2777655 3962949 Rfer_2515 Rhodoferax ferrireducens T118 hypothetical protein YP_523763.1 2777203 R 338969 CDS YP_523764.1 89901293 3962950 complement(2777770..2778720) 1 NC_007908.1 hypothetical protein 2778720 3962950 Rfer_2516 Rhodoferax ferrireducens T118 hypothetical protein YP_523764.1 2777770 R 338969 CDS YP_523765.1 89901294 3962951 complement(2778830..2779516) 1 NC_007908.1 hypothetical protein 2779516 3962951 Rfer_2517 Rhodoferax ferrireducens T118 hypothetical protein YP_523765.1 2778830 R 338969 CDS YP_523766.1 89901295 3961874 complement(2779637..2780383) 1 NC_007908.1 hypothetical protein 2780383 3961874 Rfer_2518 Rhodoferax ferrireducens T118 hypothetical protein YP_523766.1 2779637 R 338969 CDS YP_523767.1 89901296 3961875 2780434..2781063 1 NC_007908.1 transposase 2781063 3961875 Rfer_2519 Rhodoferax ferrireducens T118 transposase YP_523767.1 2780434 D 338969 CDS YP_523768.1 89901297 3961876 2781191..2781757 1 NC_007908.1 isochorismatase hydrolase 2781757 3961876 Rfer_2520 Rhodoferax ferrireducens T118 isochorismatase hydrolase YP_523768.1 2781191 D 338969 CDS YP_523769.1 89901298 3961877 2781754..2782371 1 NC_007908.1 ThiJ/PfpI 2782371 3961877 Rfer_2521 Rhodoferax ferrireducens T118 ThiJ/PfpI YP_523769.1 2781754 D 338969 CDS YP_523770.1 89901299 3961878 2782374..2782601 1 NC_007908.1 hypothetical protein 2782601 3961878 Rfer_2522 Rhodoferax ferrireducens T118 hypothetical protein YP_523770.1 2782374 D 338969 CDS YP_523771.1 89901300 3961879 2782601..2783590 1 NC_007908.1 AraC family transcriptional regulator 2783590 3961879 Rfer_2523 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_523771.1 2782601 D 338969 CDS YP_523772.1 89901301 3961880 complement(2783632..2784585) 1 NC_007908.1 peptidase C39, bacteriocin processing 2784585 3961880 Rfer_2524 Rhodoferax ferrireducens T118 peptidase C39, bacteriocin processing YP_523772.1 2783632 R 338969 CDS YP_523773.1 89901302 3961881 complement(2784582..2784971) 1 NC_007908.1 hypothetical protein 2784971 3961881 Rfer_2525 Rhodoferax ferrireducens T118 hypothetical protein YP_523773.1 2784582 R 338969 CDS YP_523774.1 89901303 3961882 complement(2785084..2785935) 1 NC_007908.1 hypothetical protein 2785935 3961882 Rfer_2526 Rhodoferax ferrireducens T118 hypothetical protein YP_523774.1 2785084 R 338969 CDS YP_523775.1 89901304 3961883 complement(2785956..2787239) 1 NC_007908.1 mechanosensitive ion channel protein MscS 2787239 3961883 Rfer_2527 Rhodoferax ferrireducens T118 mechanosensitive ion channel protein MscS YP_523775.1 2785956 R 338969 CDS YP_523776.1 89901305 3961884 complement(2787232..2788179) 1 NC_007908.1 histone deacetylase superfamily protein 2788179 3961884 Rfer_2528 Rhodoferax ferrireducens T118 histone deacetylase superfamily protein YP_523776.1 2787232 R 338969 CDS YP_523777.1 89901306 3961885 2788228..2789148 1 NC_007908.1 AAA_3 ATPase 2789148 3961885 Rfer_2529 Rhodoferax ferrireducens T118 AAA_3 ATPase YP_523777.1 2788228 D 338969 CDS YP_523778.1 89901307 3961886 2789129..2790154 1 NC_007908.1 hypothetical protein 2790154 3961886 Rfer_2530 Rhodoferax ferrireducens T118 hypothetical protein YP_523778.1 2789129 D 338969 CDS YP_523779.1 89901308 3961887 2790165..2792186 1 NC_007908.1 transglutaminase-like protein 2792186 3961887 Rfer_2531 Rhodoferax ferrireducens T118 transglutaminase-like protein YP_523779.1 2790165 D 338969 CDS YP_523780.1 89901309 3961888 2792456..2793127 1 NC_007908.1 hypothetical protein 2793127 3961888 Rfer_2532 Rhodoferax ferrireducens T118 hypothetical protein YP_523780.1 2792456 D 338969 CDS YP_523781.1 89901310 3961889 complement(2793224..2794123) 1 NC_007908.1 LysR family transcriptional regulator 2794123 3961889 Rfer_2533 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_523781.1 2793224 R 338969 CDS YP_523782.1 89901311 3961890 2794276..2794908 1 NC_007908.1 NADP oxidoreductase, coenzyme F420-dependent 2794908 3961890 Rfer_2534 Rhodoferax ferrireducens T118 NADP oxidoreductase, coenzyme F420-dependent YP_523782.1 2794276 D 338969 CDS YP_523783.1 89901312 3961891 2794994..2795404 1 NC_007908.1 DoxX 2795404 3961891 Rfer_2535 Rhodoferax ferrireducens T118 DoxX YP_523783.1 2794994 D 338969 CDS YP_523784.1 89901313 3961892 2795436..2796227 1 NC_007908.1 extradiol ring-cleavage dioxygenase III subunit B 2796227 3961892 Rfer_2536 Rhodoferax ferrireducens T118 extradiol ring-cleavage dioxygenase III subunit B YP_523784.1 2795436 D 338969 CDS YP_523785.1 89901314 3960257 2796227..2796886 1 NC_007908.1 phospholipase/carboxylesterase 2796886 3960257 Rfer_2537 Rhodoferax ferrireducens T118 phospholipase/carboxylesterase YP_523785.1 2796227 D 338969 CDS YP_523786.1 89901315 3960258 2796888..2797457 1 NC_007908.1 hypothetical protein 2797457 3960258 Rfer_2538 Rhodoferax ferrireducens T118 hypothetical protein YP_523786.1 2796888 D 338969 CDS YP_523787.1 89901316 3960259 complement(2797467..2799344) 1 NC_007908.1 K+ potassium transporter 2799344 3960259 Rfer_2539 Rhodoferax ferrireducens T118 K+ potassium transporter YP_523787.1 2797467 R 338969 CDS YP_523788.1 89901317 3960260 complement(2799418..2800104) 1 NC_007908.1 two component transcriptional regulator 2800104 3960260 Rfer_2540 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_523788.1 2799418 R 338969 CDS YP_523789.1 89901318 3960261 complement(2800101..2801612) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 2801612 3960261 Rfer_2541 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_523789.1 2800101 R 338969 CDS YP_523790.2 162289253 3960262 2801843..2803660 1 NC_007908.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 2803660 3960262 Rfer_2542 Rhodoferax ferrireducens T118 glutathione-regulated potassium-efflux system protein KefC YP_523790.2 2801843 D 338969 CDS YP_523791.1 89901320 3960263 complement(2803683..2804129) 1 NC_007908.1 hypothetical protein 2804129 3960263 Rfer_2543 Rhodoferax ferrireducens T118 hypothetical protein YP_523791.1 2803683 R 338969 CDS YP_523792.1 89901321 3960264 2804560..2805756 1 NC_007908.1 diguanylate cyclase 2805756 3960264 Rfer_2544 Rhodoferax ferrireducens T118 diguanylate cyclase YP_523792.1 2804560 D 338969 CDS YP_523793.1 89901322 3960265 2805990..2807060 1 NC_007908.1 lytic murein transglycosylase B 2807060 3960265 Rfer_2545 Rhodoferax ferrireducens T118 lytic murein transglycosylase B YP_523793.1 2805990 D 338969 CDS YP_523794.1 89901323 3960266 2807104..2807577 1 NC_007908.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2807577 smpB 3960266 smpB Rhodoferax ferrireducens T118 SsrA-binding protein YP_523794.1 2807104 D 338969 CDS YP_523795.1 89901324 3960267 2807612..2808097 1 NC_007908.1 hypothetical protein 2808097 3960267 Rfer_2547 Rhodoferax ferrireducens T118 hypothetical protein YP_523795.1 2807612 D 338969 CDS YP_523796.1 89901325 3960268 2808111..2808662 1 NC_007908.1 sigma-24 (FecI-like protein) 2808662 3960268 Rfer_2548 Rhodoferax ferrireducens T118 sigma-24 (FecI-like protein) YP_523796.1 2808111 D 338969 CDS YP_523797.1 89901326 3960269 2808679..2809497 1 NC_007908.1 anti-sigma factor; putative transmembrane transcriptional regulator 2809497 3960269 Rfer_2549 Rhodoferax ferrireducens T118 putative transmembrane transcriptional regulator YP_523797.1 2808679 D 338969 CDS YP_523798.1 89901327 3960270 complement(2809623..2810282) 1 NC_007908.1 putative fructose transport system kinase 2810282 frcK 3960270 frcK Rhodoferax ferrireducens T118 putative fructose transport system kinase YP_523798.1 2809623 R 338969 CDS YP_523799.1 89901328 3960271 complement(2810446..2810760) 1 NC_007908.1 hypothetical protein 2810760 3960271 Rfer_2551 Rhodoferax ferrireducens T118 hypothetical protein YP_523799.1 2810446 R 338969 CDS YP_523800.1 89901329 3960272 2810764..2811174 1 NC_007908.1 glyoxalase I 2811174 3960272 Rfer_2552 Rhodoferax ferrireducens T118 glyoxalase I YP_523800.1 2810764 D 338969 CDS YP_523801.1 89901330 3960273 2811256..2811903 1 NC_007908.1 response regulator receiver/ANTAR domain-containing protein 2811903 3960273 Rfer_2553 Rhodoferax ferrireducens T118 response regulator receiver/ANTAR domain-containing protein YP_523801.1 2811256 D 338969 CDS YP_523802.1 89901331 3960274 2812229..2813473 1 NC_007908.1 twin-arginine translocation pathway signal protein 2813473 3960274 Rfer_2554 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_523802.1 2812229 D 338969 CDS YP_523803.1 89901332 3960275 2813516..2814460 1 NC_007908.1 nitrate transport permease 2814460 3960275 Rfer_2555 Rhodoferax ferrireducens T118 nitrate transport permease YP_523803.1 2813516 D 338969 CDS YP_523804.1 89901333 3960276 2814457..2815281 1 NC_007908.1 nitrate transport ATP-binding subunits C and D 2815281 3960276 Rfer_2556 Rhodoferax ferrireducens T118 nitrate transport ATP-binding subunits C and D YP_523804.1 2814457 D 338969 CDS YP_523805.1 89901334 3960887 2815312..2817783 1 NC_007908.1 nitrite reductase (NAD(P)H) large subunit NirB 2817783 3960887 Rfer_2557 Rhodoferax ferrireducens T118 nitrite reductase (NAD(P)H) large subunit NirB YP_523805.1 2815312 D 338969 CDS YP_523806.1 89901335 3960888 2817932..2818279 1 NC_007908.1 nitrite reductase (NAD(P)H) large subunit NirD 2818279 3960888 Rfer_2558 Rhodoferax ferrireducens T118 nitrite reductase (NAD(P)H) large subunit NirD YP_523806.1 2817932 D 338969 CDS YP_523807.1 89901336 3960889 2818563..2821439 1 NC_007908.1 molybdopterin oxidoreductase 2821439 3960889 Rfer_2559 Rhodoferax ferrireducens T118 molybdopterin oxidoreductase YP_523807.1 2818563 D 338969 CDS YP_523808.1 89901337 3960890 complement(2821467..2822204) 1 NC_007908.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 2822204 fabG 3960890 fabG Rhodoferax ferrireducens T118 3-ketoacyl-(acyl-carrier-protein) reductase YP_523808.1 2821467 R 338969 CDS YP_523809.1 89901338 3960891 complement(2822344..2823522) 1 NC_007908.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2823522 3960891 Rfer_2561 Rhodoferax ferrireducens T118 acetyl-CoA acetyltransferase YP_523809.1 2822344 R 338969 CDS YP_523810.1 89901339 3960892 complement(2823570..2825294) 1 NC_007908.1 poly(R)-hydroxyalkanoic acid synthase, class I 2825294 3960892 Rfer_2562 Rhodoferax ferrireducens T118 poly(R)-hydroxyalkanoic acid synthase, class I YP_523810.1 2823570 R 338969 CDS YP_523811.1 89901340 3960893 2825398..2825688 1 NC_007908.1 hypothetical protein 2825688 3960893 Rfer_2563 Rhodoferax ferrireducens T118 hypothetical protein YP_523811.1 2825398 D 338969 CDS YP_523812.1 89901341 3960894 complement(2825620..2826381) 1 NC_007908.1 hypothetical protein 2826381 3960894 Rfer_2564 Rhodoferax ferrireducens T118 hypothetical protein YP_523812.1 2825620 R 338969 CDS YP_523813.1 89901342 3960895 complement(2826450..2828180) 1 NC_007908.1 hypothetical protein 2828180 3960895 Rfer_2565 Rhodoferax ferrireducens T118 hypothetical protein YP_523813.1 2826450 R 338969 CDS YP_523814.1 89901343 3960896 2828281..2828583 1 NC_007908.1 antibiotic biosynthesis monooxygenase 2828583 3960896 Rfer_2566 Rhodoferax ferrireducens T118 antibiotic biosynthesis monooxygenase YP_523814.1 2828281 D 338969 CDS YP_523815.1 89901344 3960897 2828617..2829312 1 NC_007908.1 fumarylacetoacetate (FAA) hydrolase 2829312 3960897 Rfer_2567 Rhodoferax ferrireducens T118 fumarylacetoacetate (FAA) hydrolase YP_523815.1 2828617 D 338969 CDS YP_523816.1 89901345 3960898 2829338..2829820 1 NC_007908.1 hypothetical protein 2829820 3960898 Rfer_2568 Rhodoferax ferrireducens T118 hypothetical protein YP_523816.1 2829338 D 338969 CDS YP_523817.1 89901346 3960899 2829817..2831160 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 2831160 3960899 Rfer_2569 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_523817.1 2829817 D 338969 CDS YP_523818.1 89901347 3960900 2831179..2832270 1 NC_007908.1 twin-arginine translocation pathway signal protein 2832270 3960900 Rfer_2570 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_523818.1 2831179 D 338969 CDS YP_523819.1 89901348 3960901 2832294..2832839 1 NC_007908.1 NUDIX hydrolase 2832839 3960901 Rfer_2571 Rhodoferax ferrireducens T118 NUDIX hydrolase YP_523819.1 2832294 D 338969 CDS YP_523820.1 89901349 3960902 2832943..2834373 1 NC_007908.1 DNA polymerase III subunit epsilon 2834373 3960902 Rfer_2572 Rhodoferax ferrireducens T118 DNA polymerase III subunit epsilon YP_523820.1 2832943 D 338969 CDS YP_523821.1 89901350 3960903 complement(2834499..2835053) 1 NC_007908.1 putative flavodoxin 2835053 3960903 Rfer_2573 Rhodoferax ferrireducens T118 putative flavodoxin YP_523821.1 2834499 R 338969 CDS YP_523822.1 89901351 3960904 complement(2835150..2835560) 1 NC_007908.1 DoxX 2835560 3960904 Rfer_2574 Rhodoferax ferrireducens T118 DoxX YP_523822.1 2835150 R 338969 CDS YP_523823.1 89901352 3960905 complement(2835609..2836310) 1 NC_007908.1 Pirin-like protein 2836310 3960905 Rfer_2575 Rhodoferax ferrireducens T118 Pirin-like protein YP_523823.1 2835609 R 338969 CDS YP_523824.1 89901353 3961984 complement(2836508..2837698) 1 NC_007908.1 esterase, PHB depolymerase 2837698 3961984 Rfer_2576 Rhodoferax ferrireducens T118 esterase, PHB depolymerase YP_523824.1 2836508 R 338969 CDS YP_523825.1 89901354 3961985 complement(2837743..2838168) 1 NC_007908.1 hypothetical protein 2838168 3961985 Rfer_2577 Rhodoferax ferrireducens T118 hypothetical protein YP_523825.1 2837743 R 338969 CDS YP_523826.1 89901355 3961986 2838433..2839038 1 NC_007908.1 hypothetical protein 2839038 3961986 Rfer_2578 Rhodoferax ferrireducens T118 hypothetical protein YP_523826.1 2838433 D 338969 CDS YP_523827.1 89901356 3961987 complement(2839035..2839442) 1 NC_007908.1 hypothetical protein 2839442 3961987 Rfer_2579 Rhodoferax ferrireducens T118 hypothetical protein YP_523827.1 2839035 R 338969 CDS YP_523828.1 89901357 3961988 complement(2839429..2840835) 1 NC_007908.1 replicative DNA helicase 2840835 3961988 Rfer_2580 Rhodoferax ferrireducens T118 replicative DNA helicase YP_523828.1 2839429 R 338969 CDS YP_523829.1 89901358 3961989 complement(2841863..2843860) 1 NC_007908.1 acetate--CoA ligase 2843860 3961989 Rfer_2581 Rhodoferax ferrireducens T118 acetate--CoA ligase YP_523829.1 2841863 R 338969 CDS YP_523830.1 89901359 3961990 complement(2843972..2845153) 1 NC_007908.1 Na+/H+ antiporter NhaA 2845153 3961990 Rfer_2582 Rhodoferax ferrireducens T118 Na+/H+ antiporter NhaA YP_523830.1 2843972 R 338969 CDS YP_523831.1 89901360 3961991 2845274..2846824 1 NC_007908.1 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha protein 2846824 3961991 Rfer_2583 Rhodoferax ferrireducens T118 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha protein YP_523831.1 2845274 D 338969 CDS YP_523832.1 89901361 3961993 complement(2846955..2847656) 1 NC_007908.1 ABC transporter-like protein 2847656 3961993 Rfer_2585 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523832.1 2846955 R 338969 CDS YP_523833.1 89901362 3961994 complement(2847649..2848362) 1 NC_007908.1 ABC transporter-like protein 2848362 3961994 Rfer_2586 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523833.1 2847649 R 338969 CDS YP_523834.1 89901363 3961995 complement(2848349..2849302) 1 NC_007908.1 inner-membrane translocator 2849302 3961995 Rfer_2587 Rhodoferax ferrireducens T118 inner-membrane translocator YP_523834.1 2848349 R 338969 CDS YP_523835.1 89901364 3961996 complement(2849299..2850171) 1 NC_007908.1 inner-membrane translocator 2850171 3961996 Rfer_2588 Rhodoferax ferrireducens T118 inner-membrane translocator YP_523835.1 2849299 R 338969 CDS YP_523836.1 89901365 3961997 complement(2850254..2851426) 1 NC_007908.1 extracellular ligand-binding receptor 2851426 3961997 Rfer_2589 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_523836.1 2850254 R 338969 CDS YP_523837.1 89901366 3961998 complement(2851658..2852866) 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 2852866 3961998 Rfer_2590 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_523837.1 2851658 R 338969 CDS YP_523838.1 89901367 3961999 complement(2852926..2853732) 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2853732 3961999 Rfer_2591 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_523838.1 2852926 R 338969 CDS YP_523839.1 89901368 3962000 complement(2853729..2854874) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 2854874 3962000 Rfer_2592 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_523839.1 2853729 R 338969 CDS YP_523840.1 89901369 3962001 complement(2854885..2856093) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 2856093 3962001 Rfer_2593 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_523840.1 2854885 R 338969 CDS YP_523841.1 89901370 3962002 complement(2856105..2857286) 1 NC_007908.1 Acetyl-CoA C-acyltransferase 2857286 3962002 Rfer_2594 Rhodoferax ferrireducens T118 Acetyl-CoA C-acyltransferase YP_523841.1 2856105 R 338969 CDS YP_523842.1 89901371 3962003 complement(2857307..2859427) 1 NC_007908.1 3-hydroxyacyl-CoA dehydrogenase 2859427 3962003 Rfer_2595 Rhodoferax ferrireducens T118 3-hydroxyacyl-CoA dehydrogenase YP_523842.1 2857307 R 338969 CDS YP_523843.1 89901372 3962592 2859761..2860567 1 NC_007908.1 IclR family transcriptional regulator 2860567 3962592 Rfer_2596 Rhodoferax ferrireducens T118 IclR family transcriptional regulator YP_523843.1 2859761 D 338969 CDS YP_523844.1 89901373 3962593 2860702..2861517 1 NC_007908.1 glutamate racemase 2861517 3962593 Rfer_2597 Rhodoferax ferrireducens T118 glutamate racemase YP_523844.1 2860702 D 338969 CDS YP_523845.1 89901374 3962594 complement(2861539..2862081) 1 NC_007908.1 peptide methionine sulfoxide reductase 2862081 3962594 Rfer_2598 Rhodoferax ferrireducens T118 peptide methionine sulfoxide reductase YP_523845.1 2861539 R 338969 CDS YP_523846.1 89901375 3962595 2862244..2862945 1 NC_007908.1 TetR family transcriptional regulator 2862945 3962595 Rfer_2599 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_523846.1 2862244 D 338969 CDS YP_523847.1 89901376 3962596 2862942..2864072 1 NC_007908.1 secretion protein HlyD 2864072 3962596 Rfer_2600 Rhodoferax ferrireducens T118 secretion protein HlyD YP_523847.1 2862942 D 338969 CDS YP_523848.1 89901377 3962597 2864076..2867276 1 NC_007908.1 acriflavin resistance protein 2867276 3962597 Rfer_2601 Rhodoferax ferrireducens T118 acriflavin resistance protein YP_523848.1 2864076 D 338969 CDS YP_523849.1 89901378 3962598 2867327..2867980 1 NC_007908.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase 2867980 3962598 Rfer_2602 Rhodoferax ferrireducens T118 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_523849.1 2867327 D 338969 CDS YP_523850.1 89901379 3962599 2867993..2868334 1 NC_007908.1 rhodanese-like protein 2868334 3962599 Rfer_2603 Rhodoferax ferrireducens T118 rhodanese-like protein YP_523850.1 2867993 D 338969 CDS YP_523851.1 89901380 3962600 2868402..2869730 1 NC_007908.1 Type I secretion outer membrane protein TolC 2869730 3962600 Rfer_2604 Rhodoferax ferrireducens T118 Type I secretion outer membrane protein TolC YP_523851.1 2868402 D 338969 CDS YP_523852.1 89901381 3962601 complement(2869756..2870250) 1 NC_007908.1 hypothetical protein 2870250 3962601 Rfer_2605 Rhodoferax ferrireducens T118 hypothetical protein YP_523852.1 2869756 R 338969 CDS YP_523853.1 89901382 3962602 complement(2870334..2871521) 1 NC_007908.1 class I/II aminotransferase 2871521 3962602 Rfer_2606 Rhodoferax ferrireducens T118 class I/II aminotransferase YP_523853.1 2870334 R 338969 CDS YP_523854.1 89901383 3962603 2871652..2872305 1 NC_007908.1 endonuclease III 2872305 3962603 Rfer_2607 Rhodoferax ferrireducens T118 endonuclease III YP_523854.1 2871652 D 338969 CDS YP_523855.1 89901384 3962604 2872320..2873462 1 NC_007908.1 diguanylate cyclase 2873462 3962604 Rfer_2608 Rhodoferax ferrireducens T118 diguanylate cyclase YP_523855.1 2872320 D 338969 CDS YP_523856.1 89901385 3962605 complement(2873464..2874009) 1 NC_007908.1 phosphoglycerate mutase 2874009 3962605 Rfer_2609 Rhodoferax ferrireducens T118 phosphoglycerate mutase YP_523856.1 2873464 R 338969 CDS YP_523857.1 89901386 3962606 complement(2874026..2874868) 1 NC_007908.1 cobalamin-5-phosphate synthase CobS 2874868 3962606 Rfer_2610 Rhodoferax ferrireducens T118 cobalamin-5-phosphate synthase CobS YP_523857.1 2874026 R 338969 CDS YP_523858.1 89901387 3962607 complement(2875217..2876305) 1 NC_007908.1 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 2876305 3962607 Rfer_2611 Rhodoferax ferrireducens T118 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_523858.1 2875217 R 338969 CDS YP_523859.1 89901388 3962608 complement(2876356..2877840) 1 NC_007908.1 cobyric acid synthase CobQ 2877840 3962608 Rfer_2612 Rhodoferax ferrireducens T118 cobyric acid synthase CobQ YP_523859.1 2876356 R 338969 CDS YP_523860.1 89901389 3962609 complement(2877866..2878309) 1 NC_007908.1 putative 6-pyruvoyl tetrahydropterin synthase 2878309 3962609 Rfer_2613 Rhodoferax ferrireducens T118 putative 6-pyruvoyl tetrahydropterin synthase YP_523860.1 2877866 R 338969 CDS YP_523861.1 89901390 3962610 complement(2878341..2878976) 1 NC_007908.1 organic radical activating-like protein 2878976 3962610 Rfer_2614 Rhodoferax ferrireducens T118 organic radical activating-like protein YP_523861.1 2878341 R 338969 CDS YP_523862.1 89901391 3963393 complement(2878973..2880034) 1 NC_007908.1 class I/II aminotransferase 2880034 3963393 Rfer_2615 Rhodoferax ferrireducens T118 class I/II aminotransferase YP_523862.1 2878973 R 338969 CDS YP_523863.1 89901392 3963394 complement(2880031..2880993) 1 NC_007908.1 cobalamin biosynthesis protein CobD 2880993 3963394 Rfer_2616 Rhodoferax ferrireducens T118 cobalamin biosynthesis protein CobD YP_523863.1 2880031 R 338969 CDS YP_523864.1 89901393 3963395 complement(2881007..2881720) 1 NC_007908.1 Cob(II)yrinic acid a,c-diamide reductase 2881720 3963395 Rfer_2617 Rhodoferax ferrireducens T118 Cob(II)yrinic acid a,c-diamide reductase YP_523864.1 2881007 R 338969 CDS YP_523865.1 89901394 3963396 complement(2881730..2882299) 1 NC_007908.1 cob(I)alamin adenosyltransferase 2882299 3963396 Rfer_2618 Rhodoferax ferrireducens T118 cob(I)alamin adenosyltransferase YP_523865.1 2881730 R 338969 CDS YP_523866.1 89901395 3963397 complement(2882358..2883122) 1 NC_007908.1 ABC transporter-like protein 2883122 3963397 Rfer_2619 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523866.1 2882358 R 338969 CDS YP_523867.1 89901396 3963398 complement(2883119..2884195) 1 NC_007908.1 transport system permease 2884195 3963398 Rfer_2620 Rhodoferax ferrireducens T118 transport system permease YP_523867.1 2883119 R 338969 CDS YP_523868.1 89901397 3963399 complement(2884192..2885091) 1 NC_007908.1 periplasmic-binding protein 2885091 3963399 Rfer_2621 Rhodoferax ferrireducens T118 periplasmic-binding protein YP_523868.1 2884192 R 338969 CDS YP_523869.1 89901398 3963400 complement(2885088..2885720) 1 NC_007908.1 adenosylcobinamide kinase 2885720 3963400 Rfer_2622 Rhodoferax ferrireducens T118 adenosylcobinamide kinase YP_523869.1 2885088 R 338969 CDS YP_523870.1 89901399 3963401 complement(2885717..2886595) 1 NC_007908.1 periplasmic-binding protein 2886595 3963401 Rfer_2623 Rhodoferax ferrireducens T118 periplasmic-binding protein YP_523870.1 2885717 R 338969 CDS YP_523871.1 89901400 3963402 complement(2886592..2887983) 1 NC_007908.1 CobB/CobQ-like protein glutamine amidotransferase 2887983 3963402 Rfer_2624 Rhodoferax ferrireducens T118 CobB/CobQ-like protein glutamine amidotransferase YP_523871.1 2886592 R 338969 CDS YP_523872.1 89901401 3963403 complement(2887993..2889966) 1 NC_007908.1 TonB-dependent receptor 2889966 3963403 Rfer_2625 Rhodoferax ferrireducens T118 TonB-dependent receptor YP_523872.1 2887993 R 338969 CDS YP_523873.1 89901402 3963404 2890336..2890566 1 NC_007908.1 hypothetical protein 2890566 3963404 Rfer_2626 Rhodoferax ferrireducens T118 hypothetical protein YP_523873.1 2890336 D 338969 CDS YP_523874.1 89901403 3963405 2890563..2890916 1 NC_007908.1 hypothetical protein 2890916 3963405 Rfer_2627 Rhodoferax ferrireducens T118 hypothetical protein YP_523874.1 2890563 D 338969 CDS YP_523875.1 89901404 3963406 2891163..2891981 1 NC_007908.1 hypothetical protein 2891981 3963406 Rfer_2628 Rhodoferax ferrireducens T118 hypothetical protein YP_523875.1 2891163 D 338969 CDS YP_523876.1 89901405 3963407 complement(2892004..2894412) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2894412 3963407 Rfer_2629 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_523876.1 2892004 R 338969 CDS YP_523877.1 89901406 3963408 complement(2894409..2895716) 1 NC_007908.1 metal dependent phosphohydrolase 2895716 3963408 Rfer_2630 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_523877.1 2894409 R 338969 CDS YP_523878.1 89901407 3963409 2895851..2896570 1 NC_007908.1 glutathione S-transferase-like protein 2896570 3963409 Rfer_2631 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_523878.1 2895851 D 338969 CDS YP_523879.1 89901408 3963410 2896583..2897194 1 NC_007908.1 DSBA oxidoreductase 2897194 3963410 Rfer_2632 Rhodoferax ferrireducens T118 DSBA oxidoreductase YP_523879.1 2896583 D 338969 CDS YP_523880.1 89901409 3963411 2897194..2897961 1 NC_007908.1 spermidine synthase-like protein 2897961 3963411 Rfer_2633 Rhodoferax ferrireducens T118 spermidine synthase-like protein YP_523880.1 2897194 D 338969 CDS YP_523881.1 89901410 3963412 complement(2897970..2898608) 1 NC_007908.1 3-oxoacid CoA-transferase subunit B 2898608 3963412 Rfer_2634 Rhodoferax ferrireducens T118 3-oxoacid CoA-transferase subunit B YP_523881.1 2897970 R 338969 CDS YP_523882.1 89901411 3960771 complement(2898611..2899330) 1 NC_007908.1 3-oxoacid CoA-transferase subunit A 2899330 3960771 Rfer_2635 Rhodoferax ferrireducens T118 3-oxoacid CoA-transferase subunit A YP_523882.1 2898611 R 338969 CDS YP_523883.1 89901412 3960772 2899355..2899975 1 NC_007908.1 LuxR family transcriptional regulator 2899975 3960772 Rfer_2636 Rhodoferax ferrireducens T118 LuxR family transcriptional regulator YP_523883.1 2899355 D 338969 CDS YP_523884.1 89901413 3960773 complement(2900093..2902129) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 2902129 3960773 Rfer_2637 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_523884.1 2900093 R 338969 CDS YP_523885.1 89901414 3960774 2902292..2903521 1 NC_007908.1 methyltransferase small 2903521 3960774 Rfer_2638 Rhodoferax ferrireducens T118 methyltransferase small YP_523885.1 2902292 D 338969 CDS YP_523886.1 89901415 3960775 2903810..2904055 1 NC_007908.1 hypothetical protein 2904055 3960775 Rfer_2639 Rhodoferax ferrireducens T118 hypothetical protein YP_523886.1 2903810 D 338969 CDS YP_523887.1 89901416 3960776 2904105..2904530 1 NC_007908.1 RNA-binding S4 2904530 3960776 Rfer_2640 Rhodoferax ferrireducens T118 RNA-binding S4 YP_523887.1 2904105 D 338969 CDS YP_523888.1 89901417 3960777 complement(2904575..2906965) 1 NC_007908.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2906965 3960777 Rfer_2641 Rhodoferax ferrireducens T118 DNA topoisomerase IV subunit A YP_523888.1 2904575 R 338969 CDS YP_523889.1 89901418 3960778 complement(2907070..2909040) 1 NC_007908.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2909040 3960778 Rfer_2642 Rhodoferax ferrireducens T118 DNA topoisomerase IV subunit B YP_523889.1 2907070 R 338969 CDS YP_523890.1 89901419 3960779 complement(2909116..2909616) 1 NC_007908.1 hypothetical protein 2909616 3960779 Rfer_2643 Rhodoferax ferrireducens T118 hypothetical protein YP_523890.1 2909116 R 338969 CDS YP_523891.1 89901420 3960780 complement(2909606..2910760) 1 NC_007908.1 cupin 4 2910760 3960780 Rfer_2644 Rhodoferax ferrireducens T118 cupin 4 YP_523891.1 2909606 R 338969 CDS YP_523892.1 89901421 3960781 2910823..2911356 1 NC_007908.1 fkbp-type peptidyl-prolyl cis-trans isomerase 2911356 3960781 Rfer_2645 Rhodoferax ferrireducens T118 fkbp-type peptidyl-prolyl cis-trans isomerase YP_523892.1 2910823 D 338969 CDS YP_523893.1 89901422 3960782 complement(2911447..2911896) 1 NC_007908.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 2911896 dut 3960782 dut Rhodoferax ferrireducens T118 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_523893.1 2911447 R 338969 CDS YP_523894.1 89901423 3960783 complement(2911883..2913118) 1 NC_007908.1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 2913118 3960783 Rfer_2647 Rhodoferax ferrireducens T118 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_523894.1 2911883 R 338969 CDS YP_523895.1 89901424 3960784 2913231..2914898 1 NC_007908.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2914898 pyrG 3960784 pyrG Rhodoferax ferrireducens T118 CTP synthetase YP_523895.1 2913231 D 338969 CDS YP_523896.1 89901425 3960785 2914900..2915757 1 NC_007908.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2915757 3960785 Rfer_2649 Rhodoferax ferrireducens T118 2-dehydro-3-deoxyphosphooctonate aldolase YP_523896.1 2914900 D 338969 CDS YP_523897.1 89901426 3960786 2915825..2917108 1 NC_007908.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2917108 eno 3960786 eno Rhodoferax ferrireducens T118 phosphopyruvate hydratase YP_523897.1 2915825 D 338969 CDS YP_523898.1 89901427 3960787 2917124..2917423 1 NC_007908.1 septum formation initiator 2917423 3960787 Rfer_2651 Rhodoferax ferrireducens T118 septum formation initiator YP_523898.1 2917124 D 338969 CDS YP_523899.1 89901428 3960788 complement(2917440..2918429) 1 NC_007908.1 Hsp33 protein 2918429 3960788 Rfer_2652 Rhodoferax ferrireducens T118 Hsp33 protein YP_523899.1 2917440 R 338969 CDS YP_523900.1 89901429 3960789 complement(2918500..2919024) 1 NC_007908.1 transferase hexapeptide protein 2919024 3960789 Rfer_2653 Rhodoferax ferrireducens T118 transferase hexapeptide protein YP_523900.1 2918500 R 338969 CDS YP_523901.1 89901430 3960961 complement(2919083..2920003) 1 NC_007908.1 tyrosine recombinase XerD 2920003 3960961 Rfer_2654 Rhodoferax ferrireducens T118 tyrosine recombinase XerD YP_523901.1 2919083 R 338969 CDS YP_523902.1 89901431 3960962 2920051..2921049 1 NC_007908.1 auxin efflux carrier 2921049 3960962 Rfer_2655 Rhodoferax ferrireducens T118 auxin efflux carrier YP_523902.1 2920051 D 338969 CDS YP_523903.1 89901432 3960963 complement(2921107..2923929) 1 NC_007908.1 hypothetical protein 2923929 3960963 Rfer_2656 Rhodoferax ferrireducens T118 hypothetical protein YP_523903.1 2921107 R 338969 CDS YP_523904.1 89901433 3960964 2924375..2925178 1 NC_007908.1 lytic transglycosylase catalytic subunit 2925178 3960964 Rfer_2657 Rhodoferax ferrireducens T118 lytic transglycosylase catalytic subunit YP_523904.1 2924375 D 338969 CDS YP_523905.1 89901434 3960965 2925402..2926646 1 NC_007908.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2926646 glyA 3960965 glyA Rhodoferax ferrireducens T118 serine hydroxymethyltransferase YP_523905.1 2925402 D 338969 CDS YP_523906.1 89901435 3960966 2926772..2927221 1 NC_007908.1 transcriptional regulator NrdR 2927221 nrdR 3960966 nrdR Rhodoferax ferrireducens T118 transcriptional regulator NrdR YP_523906.1 2926772 D 338969 CDS YP_523907.1 89901436 3960967 2927373..2927990 1 NC_007908.1 methylation 2927990 3960967 Rfer_2660 Rhodoferax ferrireducens T118 methylation YP_523907.1 2927373 D 338969 CDS YP_523908.1 89901437 3960968 2927990..2929015 1 NC_007908.1 hypothetical protein 2929015 3960968 Rfer_2661 Rhodoferax ferrireducens T118 hypothetical protein YP_523908.1 2927990 D 338969 CDS YP_523909.1 89901438 3960969 2929012..2929638 1 NC_007908.1 hypothetical protein 2929638 3960969 Rfer_2662 Rhodoferax ferrireducens T118 hypothetical protein YP_523909.1 2929012 D 338969 CDS YP_523910.1 89901439 3960970 2929644..2933729 1 NC_007908.1 putative type-4 fimbrial biogenesis pily1-like protein signal peptide protein 2933729 3960970 Rfer_2663 Rhodoferax ferrireducens T118 putative type-4 fimbrial biogenesis pily1-like protein signal peptide protein YP_523910.1 2929644 D 338969 CDS YP_523911.1 89901440 3960971 2933744..2934226 1 NC_007908.1 methylation 2934226 3960971 Rfer_2664 Rhodoferax ferrireducens T118 methylation YP_523911.1 2933744 D 338969 CDS YP_523912.1 89901441 3960972 2934237..2934806 1 NC_007908.1 methylation 2934806 3960972 Rfer_2665 Rhodoferax ferrireducens T118 methylation YP_523912.1 2934237 D 338969 CDS YP_523913.1 89901442 3960973 2934843..2935976 1 NC_007908.1 riboflavin biosynthesis protein RibD 2935976 3960973 Rfer_2666 Rhodoferax ferrireducens T118 riboflavin biosynthesis protein RibD YP_523913.1 2934843 D 338969 CDS YP_523914.2 162289252 3960974 2936199..2936843 1 NC_007908.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2936843 3960974 Rfer_2667 Rhodoferax ferrireducens T118 riboflavin synthase subunit alpha YP_523914.2 2936199 D 338969 CDS YP_523915.1 89901444 3960975 2936885..2938024 1 NC_007908.1 3,4-dihydroxy-2-butanone 4-phosphate synthase 2938024 3960975 Rfer_2668 Rhodoferax ferrireducens T118 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_523915.1 2936885 D 338969 CDS YP_523916.1 89901445 3960976 2938017..2938490 1 NC_007908.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2938490 ribH 3960976 ribH Rhodoferax ferrireducens T118 6,7-dimethyl-8-ribityllumazine synthase YP_523916.1 2938017 D 338969 CDS YP_523917.1 89901446 3960977 2938490..2939023 1 NC_007908.1 NusB antitermination factor 2939023 3960977 Rfer_2670 Rhodoferax ferrireducens T118 NusB antitermination factor YP_523917.1 2938490 D 338969 CDS YP_523918.1 89901447 3960978 2939020..2940213 1 NC_007908.1 aminotransferase 2940213 3960978 Rfer_2671 Rhodoferax ferrireducens T118 aminotransferase YP_523918.1 2939020 D 338969 CDS YP_523919.1 89901448 3960979 2940210..2940902 1 NC_007908.1 MotA/TolQ/ExbB proton channel 2940902 3960979 Rfer_2672 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_523919.1 2940210 D 338969 CDS YP_523920.1 89901449 3960980 2940916..2941335 1 NC_007908.1 biopolymer transport protein ExbD/TolR 2941335 3960980 Rfer_2673 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_523920.1 2940916 D 338969 CDS YP_523921.1 89901450 3962004 2941345..2942298 1 NC_007908.1 TonB-like protein 2942298 3962004 Rfer_2674 Rhodoferax ferrireducens T118 TonB-like protein YP_523921.1 2941345 D 338969 CDS YP_523922.1 89901451 3962005 2942396..2943124 1 NC_007908.1 undecaprenyl diphosphate synthase 2943124 3962005 Rfer_2675 Rhodoferax ferrireducens T118 undecaprenyl diphosphate synthase YP_523922.1 2942396 D 338969 CDS YP_523923.1 89901452 3962006 2943385..2945934 1 NC_007908.1 polysaccharide export protein 2945934 3962006 Rfer_2676 Rhodoferax ferrireducens T118 polysaccharide export protein YP_523923.1 2943385 D 338969 CDS YP_523924.1 89901453 3962007 2946076..2946954 1 NC_007908.1 glucose-1-phosphate thymidylyltransferase 2946954 3962007 Rfer_2677 Rhodoferax ferrireducens T118 glucose-1-phosphate thymidylyltransferase YP_523924.1 2946076 D 338969 CDS YP_523925.1 89901454 3962008 2946962..2947513 1 NC_007908.1 dTDP-4-dehydrorhamnose 3,5-epimerase 2947513 3962008 Rfer_2678 Rhodoferax ferrireducens T118 dTDP-4-dehydrorhamnose 3,5-epimerase YP_523925.1 2946962 D 338969 CDS YP_523926.1 89901455 3962009 2947642..2949585 1 NC_007908.1 polysaccharide biosynthesis protein CapD 2949585 3962009 Rfer_2679 Rhodoferax ferrireducens T118 polysaccharide biosynthesis protein CapD YP_523926.1 2947642 D 338969 CDS YP_523927.1 89901456 3962010 2949665..2949970 1 NC_007908.1 hypothetical protein 2949970 3962010 Rfer_2680 Rhodoferax ferrireducens T118 hypothetical protein YP_523927.1 2949665 D 338969 CDS YP_523928.1 89901457 3962014 complement(2951768..2953156) 1 NC_007908.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2953156 gltX 3962014 gltX Rhodoferax ferrireducens T118 glutamyl-tRNA synthetase YP_523928.1 2951768 R 338969 CDS YP_523929.1 89901458 3962015 complement(2953153..2954376) 1 NC_007908.1 O-succinylhomoserine sulfhydrylase 2954376 3962015 Rfer_2682 Rhodoferax ferrireducens T118 O-succinylhomoserine sulfhydrylase YP_523929.1 2953153 R 338969 CDS YP_523930.1 89901459 3962016 complement(2954373..2955878) 1 NC_007908.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2955878 3962016 Rfer_2683 Rhodoferax ferrireducens T118 amidophosphoribosyltransferase YP_523930.1 2954373 R 338969 CDS YP_523931.1 89901460 3962017 complement(2955945..2956433) 1 NC_007908.1 colicin V production protein 2956433 3962017 Rfer_2684 Rhodoferax ferrireducens T118 colicin V production protein YP_523931.1 2955945 R 338969 CDS YP_523932.1 89901461 3962018 complement(2956461..2957234) 1 NC_007908.1 hypothetical protein 2957234 3962018 Rfer_2685 Rhodoferax ferrireducens T118 hypothetical protein YP_523932.1 2956461 R 338969 CDS YP_523933.1 89901462 3962019 complement(2957255..2958580) 1 NC_007908.1 FolC bifunctional protein 2958580 3962019 Rfer_2686 Rhodoferax ferrireducens T118 FolC bifunctional protein YP_523933.1 2957255 R 338969 CDS YP_523934.1 89901463 3964233 2958621..2959016 1 NC_007908.1 hypothetical protein 2959016 3964233 Rfer_2687 Rhodoferax ferrireducens T118 hypothetical protein YP_523934.1 2958621 D 338969 CDS YP_523935.1 89901464 3964234 2959082..2959399 1 NC_007908.1 hypothetical protein 2959399 3964234 Rfer_2688 Rhodoferax ferrireducens T118 hypothetical protein YP_523935.1 2959082 D 338969 CDS YP_523936.1 89901465 3964235 2959466..2960809 1 NC_007908.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2960809 3964235 Rfer_2689 Rhodoferax ferrireducens T118 argininosuccinate synthase YP_523936.1 2959466 D 338969 CDS YP_523937.1 89901466 3964236 complement(2960830..2961789) 1 NC_007908.1 NAD-dependent epimerase/dehydratase 2961789 3964236 Rfer_2690 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_523937.1 2960830 R 338969 CDS YP_523938.1 89901467 3964237 complement(2961843..2962949) 1 NC_007908.1 UDP-N-acetylenolpyruvoylglucosamine reductase 2962949 3964237 Rfer_2691 Rhodoferax ferrireducens T118 UDP-N-acetylenolpyruvoylglucosamine reductase YP_523938.1 2961843 R 338969 CDS YP_523939.1 89901468 3964238 2963077..2963562 1 NC_007908.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 2963562 3964238 Rfer_2692 Rhodoferax ferrireducens T118 putative nucleotide-binding protein YP_523939.1 2963077 D 338969 CDS YP_523940.1 89901469 3964239 2963584..2964543 1 NC_007908.1 HD-GYP domain-containing protein 2964543 3964239 Rfer_2693 Rhodoferax ferrireducens T118 HD-GYP domain-containing protein YP_523940.1 2963584 D 338969 CDS YP_523941.1 89901470 3964240 complement(2964609..2965310) 1 NC_007908.1 amidotransferase 2965310 3964240 Rfer_2694 Rhodoferax ferrireducens T118 amidotransferase YP_523941.1 2964609 R 338969 CDS YP_523942.1 89901471 3964241 complement(2965307..2965981) 1 NC_007908.1 hypothetical protein 2965981 3964241 Rfer_2695 Rhodoferax ferrireducens T118 hypothetical protein YP_523942.1 2965307 R 338969 CDS YP_523943.1 89901472 3964242 complement(2966032..2966517) 1 NC_007908.1 YbaK/prolyl-tRNA synthetase associated protein 2966517 3964242 Rfer_2696 Rhodoferax ferrireducens T118 YbaK/prolyl-tRNA synthetase associated protein YP_523943.1 2966032 R 338969 CDS YP_523944.1 89901473 3964243 complement(2966632..2967696) 1 NC_007908.1 aldo/keto reductase 2967696 3964243 Rfer_2697 Rhodoferax ferrireducens T118 aldo/keto reductase YP_523944.1 2966632 R 338969 CDS YP_523945.1 89901474 3964244 complement(2967759..2969570) 1 NC_007908.1 AMP-dependent synthetase and ligase 2969570 3964244 Rfer_2698 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_523945.1 2967759 R 338969 CDS YP_523946.1 89901475 3964245 2969596..2970495 1 NC_007908.1 alpha/beta hydrolase 2970495 3964245 Rfer_2699 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_523946.1 2969596 D 338969 CDS YP_523947.1 89901476 3964246 2970603..2971958 1 NC_007908.1 hypothetical protein 2971958 3964246 Rfer_2700 Rhodoferax ferrireducens T118 hypothetical protein YP_523947.1 2970603 D 338969 CDS YP_523948.1 89901477 3964248 2973169..2973867 1 NC_007908.1 HAD family hydrolase 2973867 3964248 Rfer_2702 Rhodoferax ferrireducens T118 HAD family hydrolase YP_523948.1 2973169 D 338969 CDS YP_523949.1 89901478 3964249 2973851..2976565 1 NC_007908.1 aminopeptidase N 2976565 pepN 3964249 pepN Rhodoferax ferrireducens T118 aminopeptidase N YP_523949.1 2973851 D 338969 CDS YP_523950.1 89901479 3964250 2976611..2977615 1 NC_007908.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2977615 3964250 Rfer_2704 Rhodoferax ferrireducens T118 fructose-1,6-bisphosphatase YP_523950.1 2976611 D 338969 CDS YP_523951.1 89901480 3962991 2978308..2979597 1 NC_007908.1 putative lipase / esterase protein 2979597 3962991 Rfer_2705 Rhodoferax ferrireducens T118 putative lipase / esterase protein YP_523951.1 2978308 D 338969 CDS YP_523952.1 89901481 3962992 2979637..2980839 1 NC_007908.1 aromatic hydrocarbon degradation membrane protein 2980839 3962992 Rfer_2706 Rhodoferax ferrireducens T118 aromatic hydrocarbon degradation membrane protein YP_523952.1 2979637 D 338969 CDS YP_523953.1 89901482 3962993 2980902..2981171 1 NC_007908.1 hypothetical protein 2981171 3962993 Rfer_2707 Rhodoferax ferrireducens T118 hypothetical protein YP_523953.1 2980902 D 338969 CDS YP_523954.1 89901483 3962994 2981324..2982190 1 NC_007908.1 transposase IS3/IS911 2982190 3962994 Rfer_2708 Rhodoferax ferrireducens T118 transposase IS3/IS911 YP_523954.1 2981324 D 338969 CDS YP_523955.1 89901484 3962995 2982244..2982648 1 NC_007908.1 transposase IS3/IS911 2982648 3962995 Rfer_2709 Rhodoferax ferrireducens T118 transposase IS3/IS911 YP_523955.1 2982244 D 338969 CDS YP_523956.1 89901485 3962996 2982657..2982992 1 NC_007908.1 IS66 Orf2 like 2982992 3962996 Rfer_2710 Rhodoferax ferrireducens T118 IS66 Orf2 like YP_523956.1 2982657 D 338969 CDS YP_523957.1 89901486 3962997 2983074..2984594 1 NC_007908.1 transposase IS66 2984594 3962997 Rfer_2711 Rhodoferax ferrireducens T118 transposase IS66 YP_523957.1 2983074 D 338969 CDS YP_523958.1 89901487 3962998 2984627..2984860 1 NC_007908.1 hypothetical protein 2984860 3962998 Rfer_2712 Rhodoferax ferrireducens T118 hypothetical protein YP_523958.1 2984627 D 338969 CDS YP_523959.1 89901488 3963000 complement(2985756..2987111) 1 NC_007908.1 Type I secretion membrane fusion protein HlyD 2987111 3963000 Rfer_2714 Rhodoferax ferrireducens T118 Type I secretion membrane fusion protein HlyD YP_523959.1 2985756 R 338969 CDS YP_523960.1 89901489 3963001 complement(2987111..2996191) 1 NC_007908.1 VCBS 2996191 3963001 Rfer_2715 Rhodoferax ferrireducens T118 VCBS YP_523960.1 2987111 R 338969 CDS YP_523961.1 89901490 3963002 complement(2996194..2996913) 1 NC_007908.1 hypothetical protein 2996913 3963002 Rfer_2716 Rhodoferax ferrireducens T118 hypothetical protein YP_523961.1 2996194 R 338969 CDS YP_523962.1 89901491 3963003 complement(2996979..2998475) 1 NC_007908.1 hypothetical protein 2998475 3963003 Rfer_2717 Rhodoferax ferrireducens T118 hypothetical protein YP_523962.1 2996979 R 338969 CDS YP_523963.1 89901492 3963004 complement(2998472..2999089) 1 NC_007908.1 hypothetical protein 2999089 3963004 Rfer_2718 Rhodoferax ferrireducens T118 hypothetical protein YP_523963.1 2998472 R 338969 CDS YP_523964.1 89901493 3963005 complement(2999086..3001476) 1 NC_007908.1 hemolysin-type calcium-binding protein 3001476 3963005 Rfer_2719 Rhodoferax ferrireducens T118 hemolysin-type calcium-binding protein YP_523964.1 2999086 R 338969 CDS YP_523965.1 89901494 3963007 complement(3002311..3003648) 1 NC_007908.1 glycosyl transferases related to UDP-glucuronosyltransferase-like protein 3003648 3963007 Rfer_2721 Rhodoferax ferrireducens T118 glycosyl transferases related to UDP-glucuronosyltransferase-like protein YP_523965.1 3002311 R 338969 CDS YP_523966.1 89901495 3963008 complement(3003645..3005837) 1 NC_007908.1 ABC transporter-like protein 3005837 3963008 Rfer_2722 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523966.1 3003645 R 338969 CDS YP_523967.1 89901496 3963009 3006202..3006603 1 NC_007908.1 hypothetical protein 3006603 3963009 Rfer_2723 Rhodoferax ferrireducens T118 hypothetical protein YP_523967.1 3006202 D 338969 CDS YP_523968.1 89901497 3962723 3006619..3006882 1 NC_007908.1 hypothetical protein 3006882 3962723 Rfer_2724 Rhodoferax ferrireducens T118 hypothetical protein YP_523968.1 3006619 D 338969 CDS YP_523969.1 89901498 3962724 3006932..3007819 1 NC_007908.1 hypothetical protein 3007819 3962724 Rfer_2725 Rhodoferax ferrireducens T118 hypothetical protein YP_523969.1 3006932 D 338969 CDS YP_523970.1 89901499 3962725 3008425..3008616 1 NC_007908.1 hypothetical protein 3008616 3962725 Rfer_2726 Rhodoferax ferrireducens T118 hypothetical protein YP_523970.1 3008425 D 338969 CDS YP_523971.1 89901500 3962726 3008645..3009961 1 NC_007908.1 L-sorbosone dehydrogenase 3009961 3962726 Rfer_2727 Rhodoferax ferrireducens T118 L-sorbosone dehydrogenase YP_523971.1 3008645 D 338969 CDS YP_523972.1 89901501 3962727 complement(3009982..3012456) 1 NC_007908.1 serine/threonine protein kinase 3012456 3962727 Rfer_2728 Rhodoferax ferrireducens T118 serine/threonine protein kinase YP_523972.1 3009982 R 338969 CDS YP_523973.1 89901502 3962728 3012814..3013968 1 NC_007908.1 iron-containing alcohol dehydrogenase 3013968 3962728 Rfer_2729 Rhodoferax ferrireducens T118 iron-containing alcohol dehydrogenase YP_523973.1 3012814 D 338969 CDS YP_523974.1 89901503 3962729 complement(3014012..3014749) 1 NC_007908.1 hypothetical protein 3014749 3962729 Rfer_2730 Rhodoferax ferrireducens T118 hypothetical protein YP_523974.1 3014012 R 338969 CDS YP_523975.1 89901504 3962730 complement(3014777..3015088) 1 NC_007908.1 hypothetical protein 3015088 3962730 Rfer_2731 Rhodoferax ferrireducens T118 hypothetical protein YP_523975.1 3014777 R 338969 CDS YP_523976.1 89901505 3962731 3015256..3015987 1 NC_007908.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3015987 ompR 3962731 ompR Rhodoferax ferrireducens T118 osmolarity response regulator YP_523976.1 3015256 D 338969 CDS YP_523977.1 89901506 3962732 3015984..3017408 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3017408 3962732 Rfer_2733 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_523977.1 3015984 D 338969 CDS YP_523978.1 89901507 3962733 complement(3017432..3019828) 1 NC_007908.1 radical SAM family protein 3019828 3962733 Rfer_2734 Rhodoferax ferrireducens T118 radical SAM family protein YP_523978.1 3017432 R 338969 CDS YP_523979.1 89901508 3962734 complement(3019992..3020720) 1 NC_007908.1 response regulator receiver domain-containing protein 3020720 3962734 Rfer_2735 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_523979.1 3019992 R 338969 CDS YP_523980.1 89901509 3962735 complement(3021227..3021595) 1 NC_007908.1 class I cytochrome c 3021595 3962735 Rfer_2736 Rhodoferax ferrireducens T118 class I cytochrome c YP_523980.1 3021227 R 338969 CDS YP_523981.1 89901510 3962736 3022184..3022603 1 NC_007908.1 response regulator receiver domain-containing protein 3022603 3962736 Rfer_2737 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_523981.1 3022184 D 338969 CDS YP_523982.1 89901511 3962737 3022683..3023267 1 NC_007908.1 response regulator receiver domain-containing protein 3023267 3962737 Rfer_2738 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_523982.1 3022683 D 338969 CDS YP_523983.1 89901512 3962738 3023344..3024759 1 NC_007908.1 hypothetical protein 3024759 3962738 Rfer_2739 Rhodoferax ferrireducens T118 hypothetical protein YP_523983.1 3023344 D 338969 CDS YP_523984.1 89901513 3962739 3024762..3025406 1 NC_007908.1 cytochrome B561 3025406 3962739 Rfer_2740 Rhodoferax ferrireducens T118 cytochrome B561 YP_523984.1 3024762 D 338969 CDS YP_523985.1 89901514 3962740 complement(3025451..3026875) 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 3026875 3962740 Rfer_2741 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_523985.1 3025451 R 338969 CDS YP_523986.1 89901515 3962741 complement(3026872..3028506) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3028506 3962741 Rfer_2742 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_523986.1 3026872 R 338969 CDS YP_523987.1 89901516 3962742 complement(3028668..3029792) 1 NC_007908.1 oxidoreductase-like protein 3029792 3962742 Rfer_2743 Rhodoferax ferrireducens T118 oxidoreductase-like protein YP_523987.1 3028668 R 338969 CDS YP_523988.1 89901517 3963108 3029927..3030844 1 NC_007908.1 putative acyltransferase 3030844 3963108 Rfer_2744 Rhodoferax ferrireducens T118 putative acyltransferase YP_523988.1 3029927 D 338969 CDS YP_523989.1 89901518 3963109 3030851..3032107 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 3032107 3963109 Rfer_2745 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_523989.1 3030851 D 338969 CDS YP_523990.1 89901519 3963110 complement(3032205..3033056) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3033056 3963110 Rfer_2746 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_523990.1 3032205 R 338969 CDS YP_523991.1 89901520 3963111 complement(3033059..3033868) 1 NC_007908.1 ABC transporter-like protein 3033868 3963111 Rfer_2747 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_523991.1 3033059 R 338969 CDS YP_523992.1 89901521 3963112 complement(3033865..3034887) 1 NC_007908.1 extracellular solute-binding protein 3034887 3963112 Rfer_2748 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_523992.1 3033865 R 338969 CDS YP_523993.1 89901522 3963113 complement(3035195..3036931) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 3036931 3963113 Rfer_2749 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_523993.1 3035195 R 338969 CDS YP_523994.1 89901523 3963115 3037537..3038280 1 NC_007908.1 hypothetical protein 3038280 3963115 Rfer_2751 Rhodoferax ferrireducens T118 hypothetical protein YP_523994.1 3037537 D 338969 CDS YP_523995.1 89901524 3963116 complement(3038312..3039475) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 3039475 3963116 Rfer_2752 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_523995.1 3038312 R 338969 CDS YP_523996.1 89901525 3963117 3039603..3040808 1 NC_007908.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3040808 3963117 Rfer_2753 Rhodoferax ferrireducens T118 acetyl-CoA acetyltransferase YP_523996.1 3039603 D 338969 CDS YP_523997.1 89901526 3963118 3040935..3043094 1 NC_007908.1 3-hydroxyacyl-CoA dehydrogenase 3043094 3963118 Rfer_2754 Rhodoferax ferrireducens T118 3-hydroxyacyl-CoA dehydrogenase YP_523997.1 3040935 D 338969 CDS YP_523998.1 89901527 3963119 3043317..3044633 1 NC_007908.1 metal dependent phosphohydrolase 3044633 3963119 Rfer_2755 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_523998.1 3043317 D 338969 CDS YP_523999.1 89901528 3963120 3044637..3045236 1 NC_007908.1 chromate transporter 3045236 3963120 Rfer_2756 Rhodoferax ferrireducens T118 chromate transporter YP_523999.1 3044637 D 338969 CDS YP_524000.1 89901529 3963121 3045233..3045841 1 NC_007908.1 chromate transporter 3045841 3963121 Rfer_2757 Rhodoferax ferrireducens T118 chromate transporter YP_524000.1 3045233 D 338969 CDS YP_524001.1 89901530 3963122 3045909..3046952 1 NC_007908.1 extracellular solute-binding protein 3046952 3963122 Rfer_2758 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_524001.1 3045909 D 338969 CDS YP_524002.1 89901531 3963123 complement(3046963..3049290) 1 NC_007908.1 ATPase 3049290 3963123 Rfer_2759 Rhodoferax ferrireducens T118 ATPase YP_524002.1 3046963 R 338969 CDS YP_524003.1 89901532 3963124 complement(3049436..3049798) 1 NC_007908.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 3049798 clpS 3963124 clpS Rhodoferax ferrireducens T118 ATP-dependent Clp protease adaptor protein ClpS YP_524003.1 3049436 R 338969 CDS YP_524004.1 89901533 3963125 complement(3049966..3051219) 1 NC_007908.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 3051219 3963125 Rfer_2761 Rhodoferax ferrireducens T118 isocitrate dehydrogenase YP_524004.1 3049966 R 338969 CDS YP_524005.1 89901534 3963126 3051439..3051840 1 NC_007908.1 protein tyrosine phosphatase 3051840 3963126 Rfer_2762 Rhodoferax ferrireducens T118 protein tyrosine phosphatase YP_524005.1 3051439 D 338969 CDS YP_524006.1 89901535 3961311 3051920..3052372 1 NC_007908.1 hypothetical protein 3052372 3961311 Rfer_2763 Rhodoferax ferrireducens T118 hypothetical protein YP_524006.1 3051920 D 338969 CDS YP_524007.1 89901536 3961312 complement(3052392..3053504) 1 NC_007908.1 PfkB 3053504 3961312 Rfer_2764 Rhodoferax ferrireducens T118 PfkB YP_524007.1 3052392 R 338969 CDS YP_524008.1 89901537 3961313 complement(3053535..3054182) 1 NC_007908.1 pseudouridine synthase 3054182 3961313 Rfer_2765 Rhodoferax ferrireducens T118 pseudouridine synthase YP_524008.1 3053535 R 338969 CDS YP_524009.1 89901538 3961314 complement(3054172..3056325) 1 NC_007908.1 PAS/PAC sensor hybrid histidine kinase 3056325 3961314 Rfer_2766 Rhodoferax ferrireducens T118 PAS/PAC sensor hybrid histidine kinase YP_524009.1 3054172 R 338969 CDS YP_524010.1 89901539 3961315 complement(3056682..3057047) 1 NC_007908.1 hypothetical protein 3057047 3961315 Rfer_2767 Rhodoferax ferrireducens T118 hypothetical protein YP_524010.1 3056682 R 338969 CDS YP_524011.1 89901540 3961316 complement(3057110..3057691) 1 NC_007908.1 peptidase C56, PfpI 3057691 3961316 Rfer_2768 Rhodoferax ferrireducens T118 peptidase C56, PfpI YP_524011.1 3057110 R 338969 CDS YP_524012.1 89901541 3961317 3057857..3058384 1 NC_007908.1 GCN5-like protein N-acetyltransferase 3058384 3961317 Rfer_2769 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_524012.1 3057857 D 338969 CDS YP_524013.1 89901542 3961318 complement(3058397..3059515) 1 NC_007908.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 3059515 3961318 Rfer_2770 Rhodoferax ferrireducens T118 3-oxoacyl-(acyl carrier protein) synthase III YP_524013.1 3058397 R 338969 CDS YP_524014.1 89901543 3961319 complement(3059669..3060247) 1 NC_007908.1 phospholipid N-methyltransferase 3060247 3961319 Rfer_2771 Rhodoferax ferrireducens T118 phospholipid N-methyltransferase YP_524014.1 3059669 R 338969 CDS YP_524015.1 89901544 3961320 3060456..3061391 1 NC_007908.1 hypothetical protein 3061391 3961320 Rfer_2772 Rhodoferax ferrireducens T118 hypothetical protein YP_524015.1 3060456 D 338969 CDS YP_524016.1 89901545 3961321 3061472..3062701 1 NC_007908.1 hypothetical protein 3062701 3961321 Rfer_2773 Rhodoferax ferrireducens T118 hypothetical protein YP_524016.1 3061472 D 338969 CDS YP_524017.1 89901546 3961322 complement(3062750..3063220) 1 NC_007908.1 hypothetical protein 3063220 3961322 Rfer_2774 Rhodoferax ferrireducens T118 hypothetical protein YP_524017.1 3062750 R 338969 CDS YP_524018.1 89901547 3961323 complement(3063281..3063688) 1 NC_007908.1 hypothetical protein 3063688 3961323 Rfer_2775 Rhodoferax ferrireducens T118 hypothetical protein YP_524018.1 3063281 R 338969 CDS YP_524019.1 89901548 3961324 3063874..3064569 1 NC_007908.1 hypothetical protein 3064569 3961324 Rfer_2776 Rhodoferax ferrireducens T118 hypothetical protein YP_524019.1 3063874 D 338969 CDS YP_524020.1 89901549 3961325 3064690..3065085 1 NC_007908.1 hypothetical protein 3065085 3961325 Rfer_2777 Rhodoferax ferrireducens T118 hypothetical protein YP_524020.1 3064690 D 338969 CDS YP_524021.1 89901550 3961326 complement(3065109..3066542) 1 NC_007908.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3066542 rumA 3961326 rumA Rhodoferax ferrireducens T118 23S rRNA 5-methyluridine methyltransferase YP_524021.1 3065109 R 338969 CDS YP_524022.1 89901551 3961327 complement(3066610..3067662) 1 NC_007908.1 sigma-70 region 2 3067662 3961327 Rfer_2779 Rhodoferax ferrireducens T118 sigma-70 region 2 YP_524022.1 3066610 R 338969 CDS YP_524023.1 89901552 3961328 complement(3067681..3068559) 1 NC_007908.1 peptidase M23B 3068559 3961328 Rfer_2780 Rhodoferax ferrireducens T118 peptidase M23B YP_524023.1 3067681 R 338969 CDS YP_524024.1 89901553 3961329 complement(3068556..3069350) 1 NC_007908.1 protein-L-isoaspartate O-methyltransferase 3069350 3961329 Rfer_2781 Rhodoferax ferrireducens T118 protein-L-isoaspartate O-methyltransferase YP_524024.1 3068556 R 338969 CDS YP_524025.1 89901554 3961330 complement(3069347..3070108) 1 NC_007908.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3070108 surE 3961330 surE Rhodoferax ferrireducens T118 stationary phase survival protein SurE YP_524025.1 3069347 R 338969 CDS YP_524026.1 89901555 3961389 3070233..3071207 1 NC_007908.1 zinc-binding alcohol dehydrogenase 3071207 3961389 Rfer_2783 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_524026.1 3070233 D 338969 CDS YP_524027.1 89901556 3961390 complement(3071417..3073399) 1 NC_007908.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3073399 3961390 Rfer_2784 Rhodoferax ferrireducens T118 glucosyltransferase MdoH YP_524027.1 3071417 R 338969 CDS YP_524028.1 89901557 3961391 complement(3073396..3074964) 1 NC_007908.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3074964 mdoG 3961391 mdoG Rhodoferax ferrireducens T118 glucan biosynthesis protein G YP_524028.1 3073396 R 338969 CDS YP_524029.1 89901558 3961392 complement(3075169..3076602) 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 3076602 3961392 Rfer_2786 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_524029.1 3075169 R 338969 CDS YP_524030.1 89901559 3961393 complement(3076599..3077261) 1 NC_007908.1 hypothetical protein 3077261 3961393 Rfer_2787 Rhodoferax ferrireducens T118 hypothetical protein YP_524030.1 3076599 R 338969 CDS YP_524031.1 89901560 3961394 complement(3077245..3078666) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3078666 3961394 Rfer_2788 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524031.1 3077245 R 338969 CDS YP_524032.1 89901561 3961395 complement(3078859..3080448) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 3080448 3961395 Rfer_2789 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524032.1 3078859 R 338969 CDS YP_524033.1 89901562 3961396 3080731..3081987 1 NC_007908.1 major facilitator transporter 3081987 3961396 Rfer_2790 Rhodoferax ferrireducens T118 major facilitator transporter YP_524033.1 3080731 D 338969 CDS YP_524034.1 89901563 3961397 3082012..3083640 1 NC_007908.1 nitrate/nitrite antiporter 3083640 3961397 Rfer_2791 Rhodoferax ferrireducens T118 nitrate/nitrite antiporter YP_524034.1 3082012 D 338969 CDS YP_524035.1 89901564 3961398 3083752..3087570 1 NC_007908.1 nitrate reductase subunit alpha 3087570 3961398 Rfer_2792 Rhodoferax ferrireducens T118 nitrate reductase subunit alpha YP_524035.1 3083752 D 338969 CDS YP_524036.1 89901565 3961399 3087582..3089105 1 NC_007908.1 nitrate reductase subunit beta 3089105 3961399 Rfer_2793 Rhodoferax ferrireducens T118 nitrate reductase subunit beta YP_524036.1 3087582 D 338969 CDS YP_524037.1 89901566 3961400 3089108..3089815 1 NC_007908.1 nitrate reductase molybdenum cofactor assembly chaperone 3089815 3961400 Rfer_2794 Rhodoferax ferrireducens T118 nitrate reductase molybdenum cofactor assembly chaperone YP_524037.1 3089108 D 338969 CDS YP_524038.1 89901567 3961401 3089812..3090546 1 NC_007908.1 respiratory nitrate reductase subunit gamma 3090546 3961401 Rfer_2795 Rhodoferax ferrireducens T118 respiratory nitrate reductase subunit gamma YP_524038.1 3089812 D 338969 CDS YP_524039.1 89901568 3961402 3090557..3091348 1 NC_007908.1 PpiC-type peptidyl-prolyl cis-trans isomerase 3091348 3961402 Rfer_2796 Rhodoferax ferrireducens T118 PpiC-type peptidyl-prolyl cis-trans isomerase YP_524039.1 3090557 D 338969 CDS YP_524040.1 89901569 3961403 complement(3091374..3091814) 1 NC_007908.1 signal-transduction protein 3091814 3961403 Rfer_2797 Rhodoferax ferrireducens T118 signal-transduction protein YP_524040.1 3091374 R 338969 CDS YP_524041.1 89901570 3961404 complement(3091861..3092916) 1 NC_007908.1 catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 3092916 3961404 Rfer_2798 Rhodoferax ferrireducens T118 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_524041.1 3091861 R 338969 CDS YP_524042.1 89901571 3961405 complement(3092913..3094757) 1 NC_007908.1 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein 3094757 3961405 Rfer_2799 Rhodoferax ferrireducens T118 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein YP_524042.1 3092913 R 338969 CDS YP_524043.1 89901572 3961406 complement(3094754..3096580) 1 NC_007908.1 4Fe-4S ferredoxin 3096580 3961406 Rfer_2800 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_524043.1 3094754 R 338969 CDS YP_524044.1 89901573 3961407 complement(3096743..3097252) 1 NC_007908.1 lactoylglutathione lyase 3097252 3961407 Rfer_2801 Rhodoferax ferrireducens T118 lactoylglutathione lyase YP_524044.1 3096743 R 338969 CDS YP_524045.1 89901574 3964252 complement(3097249..3099303) 1 NC_007908.1 carbamoyl-phosphate synthase L chain, ATP-binding 3099303 3964252 Rfer_2802 Rhodoferax ferrireducens T118 carbamoyl-phosphate synthase L chain, ATP-binding YP_524045.1 3097249 R 338969 CDS YP_524046.1 89901575 3964253 complement(3099663..3101195) 1 NC_007908.1 propionyl-CoA carboxylase 3101195 3964253 Rfer_2803 Rhodoferax ferrireducens T118 propionyl-CoA carboxylase YP_524046.1 3099663 R 338969 CDS YP_524047.1 89901576 3964254 complement(3101258..3102316) 1 NC_007908.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 3102316 3964254 Rfer_2804 Rhodoferax ferrireducens T118 arginine/ornithine transport system ATPase YP_524047.1 3101258 R 338969 CDS YP_524048.1 89901577 3964255 complement(3102341..3104500) 1 NC_007908.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 3104500 3964255 Rfer_2805 Rhodoferax ferrireducens T118 methylmalonyl-CoA mutase YP_524048.1 3102341 R 338969 CDS YP_524049.1 89901578 3964256 3104655..3105302 1 NC_007908.1 GntR family transcriptional regulator 3105302 3964256 Rfer_2806 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_524049.1 3104655 D 338969 CDS YP_524050.1 89901579 3964257 complement(3105311..3106609) 1 NC_007908.1 hypothetical protein 3106609 3964257 Rfer_2807 Rhodoferax ferrireducens T118 hypothetical protein YP_524050.1 3105311 R 338969 CDS YP_524051.1 89901580 3964258 complement(3106596..3107087) 1 NC_007908.1 hypothetical protein 3107087 3964258 Rfer_2808 Rhodoferax ferrireducens T118 hypothetical protein YP_524051.1 3106596 R 338969 CDS YP_524052.1 89901581 3964259 complement(3107093..3107320) 1 NC_007908.1 hypothetical protein 3107320 3964259 Rfer_2809 Rhodoferax ferrireducens T118 hypothetical protein YP_524052.1 3107093 R 338969 CDS YP_524053.1 89901582 3964260 complement(3107636..3108769) 1 NC_007908.1 extracellular ligand-binding receptor 3108769 3964260 Rfer_2810 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_524053.1 3107636 R 338969 CDS YP_524054.1 89901583 3964261 complement(3108932..3113017) 1 NC_007908.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 3113017 putA 3964261 putA Rhodoferax ferrireducens T118 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_524054.1 3108932 R 338969 CDS YP_524055.1 89901584 3964262 complement(3113149..3113862) 1 NC_007908.1 hypothetical protein 3113862 3964262 Rfer_2812 Rhodoferax ferrireducens T118 hypothetical protein YP_524055.1 3113149 R 338969 CDS YP_524056.1 89901585 3964263 complement(3113822..3114202) 1 NC_007908.1 XRE family transcriptional regulator 3114202 3964263 Rfer_2813 Rhodoferax ferrireducens T118 XRE family transcriptional regulator YP_524056.1 3113822 R 338969 CDS YP_524057.1 89901586 3964265 complement(3114701..3115573) 1 NC_007908.1 hypothetical protein 3115573 3964265 Rfer_2814 Rhodoferax ferrireducens T118 hypothetical protein YP_524057.1 3114701 R 338969 CDS YP_524058.1 89901587 3964266 complement(3115573..3117537) 1 NC_007908.1 carbamoyl-phosphate synthase L chain, ATP-binding 3117537 3964266 Rfer_2815 Rhodoferax ferrireducens T118 carbamoyl-phosphate synthase L chain, ATP-binding YP_524058.1 3115573 R 338969 CDS YP_524059.1 89901588 3964267 complement(3117534..3118370) 1 NC_007908.1 enoyl-CoA hydratase/isomerase 3118370 3964267 Rfer_2816 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_524059.1 3117534 R 338969 CDS YP_524060.1 89901589 3964268 complement(3118370..3119521) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 3119521 3964268 Rfer_2817 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_524060.1 3118370 R 338969 CDS YP_524061.1 89901590 3964269 complement(3119569..3121179) 1 NC_007908.1 propionyl-CoA carboxylase 3121179 3964269 Rfer_2818 Rhodoferax ferrireducens T118 propionyl-CoA carboxylase YP_524061.1 3119569 R 338969 CDS YP_524062.1 89901591 3964270 3121346..3121642 1 NC_007908.1 sterol-binding 3121642 3964270 Rfer_2819 Rhodoferax ferrireducens T118 sterol-binding YP_524062.1 3121346 D 338969 CDS YP_524063.1 89901592 3960657 3121666..3122196 1 NC_007908.1 MerR family transcriptional regulator 3122196 3960657 Rfer_2820 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_524063.1 3121666 D 338969 CDS YP_524064.1 89901593 3960659 complement(3122669..3123178) 1 NC_007908.1 hypothetical protein 3123178 3960659 Rfer_2821 Rhodoferax ferrireducens T118 hypothetical protein YP_524064.1 3122669 R 338969 CDS YP_524065.1 89901594 3960660 3123676..3123873 1 NC_007908.1 hypothetical protein 3123873 3960660 Rfer_2822 Rhodoferax ferrireducens T118 hypothetical protein YP_524065.1 3123676 D 338969 CDS YP_524066.1 89901595 3960661 3124280..3124771 1 NC_007908.1 hypothetical protein 3124771 3960661 Rfer_2823 Rhodoferax ferrireducens T118 hypothetical protein YP_524066.1 3124280 D 338969 CDS YP_524067.1 89901596 3960662 3125129..3126382 1 NC_007908.1 chromate transporter 3126382 3960662 Rfer_2824 Rhodoferax ferrireducens T118 chromate transporter YP_524067.1 3125129 D 338969 CDS YP_524068.1 89901597 3960663 3126528..3126734 1 NC_007908.1 hypothetical protein 3126734 3960663 Rfer_2825 Rhodoferax ferrireducens T118 hypothetical protein YP_524068.1 3126528 D 338969 CDS YP_524069.1 89901598 3960664 3126764..3127201 1 NC_007908.1 hypothetical protein 3127201 3960664 Rfer_2826 Rhodoferax ferrireducens T118 hypothetical protein YP_524069.1 3126764 D 338969 CDS YP_524070.1 89901599 3960665 complement(3127263..3127859) 1 NC_007908.1 3'-5' exonuclease 3127859 3960665 Rfer_2827 Rhodoferax ferrireducens T118 3'-5' exonuclease YP_524070.1 3127263 R 338969 CDS YP_524071.1 89901600 3960666 3128122..3128880 1 NC_007908.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 3128880 3960666 Rfer_2828 Rhodoferax ferrireducens T118 3-demethylubiquinone-9 3-methyltransferase YP_524071.1 3128122 D 338969 CDS YP_524072.1 89901601 3960667 3128895..3129560 1 NC_007908.1 phosphoglycolate phosphatase 3129560 3960667 Rfer_2829 Rhodoferax ferrireducens T118 phosphoglycolate phosphatase YP_524072.1 3128895 D 338969 CDS YP_524073.1 89901602 3960669 3130189..3131427 1 NC_007908.1 phage integrase 3131427 3960669 Rfer_2830 Rhodoferax ferrireducens T118 phage integrase YP_524073.1 3130189 D 338969 CDS YP_524074.1 89901603 3960670 3131497..3131994 1 NC_007908.1 hypothetical protein 3131994 3960670 Rfer_2831 Rhodoferax ferrireducens T118 hypothetical protein YP_524074.1 3131497 D 338969 CDS YP_524075.1 89901604 3960671 3132107..3132472 1 NC_007908.1 phage transcriptional regulator AlpA 3132472 3960671 Rfer_2832 Rhodoferax ferrireducens T118 phage transcriptional regulator AlpA YP_524075.1 3132107 D 338969 CDS YP_524076.1 89901605 3960672 3132465..3132929 1 NC_007908.1 hypothetical protein 3132929 3960672 Rfer_2833 Rhodoferax ferrireducens T118 hypothetical protein YP_524076.1 3132465 D 338969 CDS YP_524077.1 89901606 3960673 3132926..3134488 1 NC_007908.1 hypothetical protein 3134488 3960673 Rfer_2834 Rhodoferax ferrireducens T118 hypothetical protein YP_524077.1 3132926 D 338969 CDS YP_524078.1 89901607 3963997 3134485..3134844 1 NC_007908.1 hypothetical protein 3134844 3963997 Rfer_2835 Rhodoferax ferrireducens T118 hypothetical protein YP_524078.1 3134485 D 338969 CDS YP_524079.1 89901608 3963998 3134856..3135098 1 NC_007908.1 hypothetical protein 3135098 3963998 Rfer_2836 Rhodoferax ferrireducens T118 hypothetical protein YP_524079.1 3134856 D 338969 CDS YP_524080.1 89901609 3963999 3135314..3136372 1 NC_007908.1 hypothetical protein 3136372 3963999 Rfer_2837 Rhodoferax ferrireducens T118 hypothetical protein YP_524080.1 3135314 D 338969 CDS YP_524081.1 89901610 3964000 3136513..3136794 1 NC_007908.1 hypothetical protein 3136794 3964000 Rfer_2838 Rhodoferax ferrireducens T118 hypothetical protein YP_524081.1 3136513 D 338969 CDS YP_524082.1 89901611 3964001 complement(3137111..3137926) 1 NC_007908.1 hypothetical protein 3137926 3964001 Rfer_2839 Rhodoferax ferrireducens T118 hypothetical protein YP_524082.1 3137111 R 338969 CDS YP_524083.1 89901612 3964002 complement(3138616..3139212) 1 NC_007908.1 hypothetical protein 3139212 3964002 Rfer_2840 Rhodoferax ferrireducens T118 hypothetical protein YP_524083.1 3138616 R 338969 CDS YP_524084.1 89901613 3964004 complement(3139901..3140443) 1 NC_007908.1 2',5' RNA ligase 3140443 3964004 Rfer_2842 Rhodoferax ferrireducens T118 2',5' RNA ligase YP_524084.1 3139901 R 338969 CDS YP_524085.1 89901614 3964005 complement(3140483..3141130) 1 NC_007908.1 bifunctional deaminase-reductase-like protein 3141130 3964005 Rfer_2843 Rhodoferax ferrireducens T118 bifunctional deaminase-reductase-like protein YP_524085.1 3140483 R 338969 CDS YP_524086.1 89901615 3964006 complement(3141193..3142302) 1 NC_007908.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 3142302 3964006 Rfer_2844 Rhodoferax ferrireducens T118 selenophosphate synthetase YP_524086.1 3141193 R 338969 CDS YP_524087.1 89901616 3964007 complement(3142616..3144238) 1 NC_007908.1 AMP-dependent synthetase and ligase 3144238 3964007 Rfer_2845 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_524087.1 3142616 R 338969 CDS YP_524088.1 89901617 3964008 complement(3144255..3145046) 1 NC_007908.1 alpha/beta hydrolase 3145046 3964008 Rfer_2846 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_524088.1 3144255 R 338969 CDS YP_524089.1 89901618 3964009 complement(3145188..3145487) 1 NC_007908.1 hypothetical protein 3145487 3964009 Rfer_2847 Rhodoferax ferrireducens T118 hypothetical protein YP_524089.1 3145188 R 338969 CDS YP_524090.1 89901619 3964010 complement(3145546..3145800) 1 NC_007908.1 hypothetical protein 3145800 3964010 Rfer_2848 Rhodoferax ferrireducens T118 hypothetical protein YP_524090.1 3145546 R 338969 CDS YP_524091.1 89901620 3964011 complement(3145819..3147111) 1 NC_007908.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3147111 3964011 Rfer_2849 Rhodoferax ferrireducens T118 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_524091.1 3145819 R 338969 CDS YP_524092.1 89901621 3964012 complement(3147174..3149027) 1 NC_007908.1 aldehyde ferredoxin oxidoreductase 3149027 3964012 Rfer_2850 Rhodoferax ferrireducens T118 aldehyde ferredoxin oxidoreductase YP_524092.1 3147174 R 338969 CDS YP_524093.1 89901622 3964013 complement(3149040..3149603) 1 NC_007908.1 4Fe-4S ferredoxin 3149603 3964013 Rfer_2851 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_524093.1 3149040 R 338969 CDS YP_524094.1 89901623 3964014 complement(3149776..3151089) 1 NC_007908.1 putative di-heme cytochrome c 3151089 3964014 Rfer_2852 Rhodoferax ferrireducens T118 putative di-heme cytochrome c YP_524094.1 3149776 R 338969 CDS YP_524095.1 89901624 3964015 complement(3151270..3151770) 1 NC_007908.1 hypothetical protein 3151770 3964015 Rfer_2853 Rhodoferax ferrireducens T118 hypothetical protein YP_524095.1 3151270 R 338969 CDS YP_524096.1 89901625 3964016 complement(3151997..3153370) 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 3153370 3964016 Rfer_2854 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_524096.1 3151997 R 338969 CDS YP_524097.1 89901626 3962380 complement(3153360..3155159) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3155159 3962380 Rfer_2855 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524097.1 3153360 R 338969 CDS YP_524098.1 89901627 3962381 3155249..3156391 1 NC_007908.1 putative GAF sensor protein 3156391 3962381 Rfer_2856 Rhodoferax ferrireducens T118 putative GAF sensor protein YP_524098.1 3155249 D 338969 CDS YP_524099.1 89901628 3962382 complement(3156413..3157180) 1 NC_007908.1 ModE family transcriptional regulator 3157180 3962382 Rfer_2857 Rhodoferax ferrireducens T118 ModE family transcriptional regulator YP_524099.1 3156413 R 338969 CDS YP_524100.1 89901629 3962383 3157322..3158077 1 NC_007908.1 molybdenum ABC transporter periplasmic molybdate-binding protein 3158077 3962383 Rfer_2858 Rhodoferax ferrireducens T118 molybdenum ABC transporter periplasmic molybdate-binding protein YP_524100.1 3157322 D 338969 CDS YP_524101.1 89901630 3962384 3158074..3158787 1 NC_007908.1 molybdate ABC transporter permease 3158787 3962384 Rfer_2859 Rhodoferax ferrireducens T118 molybdate ABC transporter permease YP_524101.1 3158074 D 338969 CDS YP_524102.1 89901631 3962385 3158784..3159893 1 NC_007908.1 molybdate ABC transporter ATP-binding protein 3159893 3962385 Rfer_2860 Rhodoferax ferrireducens T118 molybdate ABC transporter ATP-binding protein YP_524102.1 3158784 D 338969 CDS YP_524103.1 89901632 3962386 complement(3160047..3160727) 1 NC_007908.1 isoprenoid biosynthesis protein with amidotransferase-like protein domain 3160727 3962386 Rfer_2861 Rhodoferax ferrireducens T118 isoprenoid biosynthesis protein with amidotransferase-like protein domain YP_524103.1 3160047 R 338969 CDS YP_524104.1 89901633 3962387 3160824..3161570 1 NC_007908.1 AzlC-like protein 3161570 3962387 Rfer_2862 Rhodoferax ferrireducens T118 AzlC-like protein YP_524104.1 3160824 D 338969 CDS YP_524105.1 89901634 3962388 3161567..3161899 1 NC_007908.1 branched-chain amino acid transport 3161899 3962388 Rfer_2863 Rhodoferax ferrireducens T118 branched-chain amino acid transport YP_524105.1 3161567 D 338969 CDS YP_524106.1 89901635 3962389 complement(3162033..3163988) 1 NC_007908.1 sigma-54 dependent trancsriptional regulator 3163988 3962389 Rfer_2864 Rhodoferax ferrireducens T118 sigma-54 dependent trancsriptional regulator YP_524106.1 3162033 R 338969 CDS YP_524107.1 89901636 3962390 3164352..3165560 1 NC_007908.1 iron-containing alcohol dehydrogenase 3165560 3962390 Rfer_2865 Rhodoferax ferrireducens T118 iron-containing alcohol dehydrogenase YP_524107.1 3164352 D 338969 CDS YP_524108.1 89901637 3962391 3165870..3167390 1 NC_007908.1 aldehyde dehydrogenase 3167390 3962391 Rfer_2866 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_524108.1 3165870 D 338969 CDS YP_524109.1 89901638 3962392 complement(3167511..3168359) 1 NC_007908.1 hypothetical protein 3168359 3962392 Rfer_2867 Rhodoferax ferrireducens T118 hypothetical protein YP_524109.1 3167511 R 338969 CDS YP_524110.1 89901639 3962393 complement(3168356..3169105) 1 NC_007908.1 ABC transporter-like protein 3169105 3962393 Rfer_2868 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524110.1 3168356 R 338969 CDS YP_524111.1 89901640 3962394 complement(3169102..3169884) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3169884 3962394 Rfer_2869 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524111.1 3169102 R 338969 CDS YP_524112.1 89901641 3962395 3169935..3171053 1 NC_007908.1 molybdate metabolism transcriptional regulator 3171053 3962395 Rfer_2870 Rhodoferax ferrireducens T118 molybdate metabolism transcriptional regulator YP_524112.1 3169935 D 338969 CDS YP_524113.1 89901642 3962396 3171197..3171805 1 NC_007908.1 tripartite ATP-independent periplasmic transporter DctQ 3171805 3962396 Rfer_2871 Rhodoferax ferrireducens T118 tripartite ATP-independent periplasmic transporter DctQ YP_524113.1 3171197 D 338969 CDS YP_524114.1 89901643 3962397 3171820..3173607 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 3173607 3962397 Rfer_2872 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_524114.1 3171820 D 338969 CDS YP_524115.1 89901644 3962398 complement(3173806..3174885) 1 NC_007908.1 twin-arginine translocation pathway signal protein 3174885 3962398 Rfer_2873 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524115.1 3173806 R 338969 CDS YP_524116.1 89901645 3963088 complement(3175555..3176640) 1 NC_007908.1 twin-arginine translocation pathway signal protein 3176640 3963088 Rfer_2874 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524116.1 3175555 R 338969 CDS YP_524117.1 89901646 3963089 complement(3176825..3178723) 1 NC_007908.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3178723 3963089 Rfer_2875 Rhodoferax ferrireducens T118 1-deoxy-D-xylulose-5-phosphate synthase YP_524117.1 3176825 R 338969 CDS YP_524118.1 89901647 3963090 complement(3178796..3179740) 1 NC_007908.1 polyprenyl synthetase 3179740 3963090 Rfer_2876 Rhodoferax ferrireducens T118 polyprenyl synthetase YP_524118.1 3178796 R 338969 CDS YP_524119.1 89901648 3963091 complement(3179737..3180024) 1 NC_007908.1 exonuclease VII small subunit 3180024 3963091 Rfer_2877 Rhodoferax ferrireducens T118 exonuclease VII small subunit YP_524119.1 3179737 R 338969 CDS YP_524120.1 89901649 3963092 3180207..3181364 1 NC_007908.1 Rieske (2Fe-2S) protein 3181364 3963092 Rfer_2878 Rhodoferax ferrireducens T118 Rieske (2Fe-2S) protein YP_524120.1 3180207 D 338969 CDS YP_524121.1 89901650 3963093 3181442..3182329 1 NC_007908.1 hypothetical protein 3182329 3963093 Rfer_2879 Rhodoferax ferrireducens T118 hypothetical protein YP_524121.1 3181442 D 338969 CDS YP_524122.1 89901651 3963094 3182365..3183234 1 NC_007908.1 3-mercaptopyruvate sulfurtransferase 3183234 3963094 Rfer_2880 Rhodoferax ferrireducens T118 3-mercaptopyruvate sulfurtransferase YP_524122.1 3182365 D 338969 CDS YP_524123.1 89901652 3963095 complement(3183409..3185145) 1 NC_007908.1 hypothetical protein 3185145 3963095 Rfer_2881 Rhodoferax ferrireducens T118 hypothetical protein YP_524123.1 3183409 R 338969 CDS YP_524124.1 89901653 3963096 3185501..3186415 1 NC_007908.1 glycosyl transferase family protein 3186415 3963096 Rfer_2882 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_524124.1 3185501 D 338969 CDS YP_524125.1 89901654 3963097 3186412..3187278 1 NC_007908.1 uroporphyrin-III C-methyltransferase 3187278 3963097 Rfer_2883 Rhodoferax ferrireducens T118 uroporphyrin-III C-methyltransferase YP_524125.1 3186412 D 338969 CDS YP_524126.1 89901655 3963098 3187344..3188588 1 NC_007908.1 hypothetical protein 3188588 3963098 Rfer_2884 Rhodoferax ferrireducens T118 hypothetical protein YP_524126.1 3187344 D 338969 CDS YP_524127.1 89901656 3963099 3188785..3188997 1 NC_007908.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3188997 rpsU 3963099 rpsU Rhodoferax ferrireducens T118 30S ribosomal protein S21 YP_524127.1 3188785 D 338969 CDS YP_524128.1 89901657 3963100 3189178..3189624 1 NC_007908.1 hypothetical protein 3189624 3963100 Rfer_2886 Rhodoferax ferrireducens T118 hypothetical protein YP_524128.1 3189178 D 338969 CDS YP_524129.1 89901658 3963101 complement(3189636..3191042) 1 NC_007908.1 peptidase U62, modulator of DNA gyrase 3191042 3963101 Rfer_2887 Rhodoferax ferrireducens T118 peptidase U62, modulator of DNA gyrase YP_524129.1 3189636 R 338969 CDS YP_524130.1 89901659 3963102 3191066..3191680 1 NC_007908.1 hypothetical protein 3191680 3963102 Rfer_2888 Rhodoferax ferrireducens T118 hypothetical protein YP_524130.1 3191066 D 338969 CDS YP_524131.1 89901660 3963103 3191677..3192282 1 NC_007908.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 3192282 mogA 3963103 mogA Rhodoferax ferrireducens T118 molybdenum cofactor biosynthesis protein MogA YP_524131.1 3191677 D 338969 CDS YP_524132.1 89901661 3963104 complement(3192348..3193121) 1 NC_007908.1 serine O-acetyltransferase 3193121 3963104 Rfer_2890 Rhodoferax ferrireducens T118 serine O-acetyltransferase YP_524132.1 3192348 R 338969 CDS YP_524133.1 89901662 3963105 complement(3193131..3193991) 1 NC_007908.1 RNA methyltransferase TrmH 3193991 3963105 Rfer_2891 Rhodoferax ferrireducens T118 RNA methyltransferase TrmH YP_524133.1 3193131 R 338969 CDS YP_524134.1 89901663 3963106 3194091..3194993 1 NC_007908.1 inositol-1(or 4)-monophosphatase 3194993 3963106 Rfer_2892 Rhodoferax ferrireducens T118 inositol-1(or 4)-monophosphatase YP_524134.1 3194091 D 338969 CDS YP_524135.1 89901664 3963107 complement(3195022..3198366) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3198366 3963107 Rfer_2893 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_524135.1 3195022 R 338969 CDS YP_524136.1 89901665 3963374 complement(3198549..3199229) 1 NC_007908.1 class I cytochrome c 3199229 3963374 Rfer_2894 Rhodoferax ferrireducens T118 class I cytochrome c YP_524136.1 3198549 R 338969 CDS YP_524137.1 89901666 3963375 complement(3199345..3200703) 1 NC_007908.1 hypothetical protein 3200703 3963375 Rfer_2895 Rhodoferax ferrireducens T118 hypothetical protein YP_524137.1 3199345 R 338969 CDS YP_524138.1 89901667 3963376 complement(3200700..3204197) 1 NC_007908.1 UvrD/REP helicase 3204197 3963376 Rfer_2896 Rhodoferax ferrireducens T118 UvrD/REP helicase YP_524138.1 3200700 R 338969 CDS YP_524139.1 89901668 3963377 complement(3204588..3207128) 1 NC_007908.1 hypothetical protein 3207128 3963377 Rfer_2897 Rhodoferax ferrireducens T118 hypothetical protein YP_524139.1 3204588 R 338969 CDS YP_524140.1 89901669 3963378 3207145..3207546 1 NC_007908.1 thioredoxin 3207546 3963378 Rfer_2898 Rhodoferax ferrireducens T118 thioredoxin YP_524140.1 3207145 D 338969 CDS YP_524141.1 89901670 3963379 3207856..3209118 1 NC_007908.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 3209118 rho 3963379 rho Rhodoferax ferrireducens T118 transcription termination factor Rho YP_524141.1 3207856 D 338969 CDS YP_524142.1 89901671 3963380 3209170..3209493 1 NC_007908.1 50S ribosomal protein L31 3209493 3963380 Rfer_2900 Rhodoferax ferrireducens T118 50S ribosomal protein L31 YP_524142.1 3209170 D 338969 CDS YP_524143.1 89901672 3963381 3209474..3211279 1 NC_007908.1 putative inner membrane transmembrane protein 3211279 3963381 Rfer_2901 Rhodoferax ferrireducens T118 putative inner membrane transmembrane protein YP_524143.1 3209474 D 338969 CDS YP_524144.1 89901673 3963382 3211403..3213136 1 NC_007908.1 type II secretion system protein E 3213136 3963382 Rfer_2902 Rhodoferax ferrireducens T118 type II secretion system protein E YP_524144.1 3211403 D 338969 CDS YP_524145.1 89901674 3963383 3213157..3214374 1 NC_007908.1 type II secretion system protein 3214374 3963383 Rfer_2903 Rhodoferax ferrireducens T118 type II secretion system protein YP_524145.1 3213157 D 338969 CDS YP_524146.1 89901675 3963384 3214374..3215216 1 NC_007908.1 prepilin peptidase 3215216 3963384 Rfer_2904 Rhodoferax ferrireducens T118 prepilin peptidase YP_524146.1 3214374 D 338969 CDS YP_524147.1 89901676 3963385 3215220..3215858 1 NC_007908.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3215858 coaE 3963385 coaE Rhodoferax ferrireducens T118 dephospho-CoA kinase YP_524147.1 3215220 D 338969 CDS YP_524148.1 89901677 3963386 3215864..3216622 1 NC_007908.1 hypothetical protein 3216622 3963386 Rfer_2906 Rhodoferax ferrireducens T118 hypothetical protein YP_524148.1 3215864 D 338969 CDS YP_524149.1 89901678 3963387 3216619..3216837 1 NC_007908.1 hypothetical protein 3216837 3963387 Rfer_2907 Rhodoferax ferrireducens T118 hypothetical protein YP_524149.1 3216619 D 338969 CDS YP_524150.1 89901679 3963388 complement(3216877..3217356) 1 NC_007908.1 NUDIX hydrolase 3217356 3963388 Rfer_2908 Rhodoferax ferrireducens T118 NUDIX hydrolase YP_524150.1 3216877 R 338969 CDS YP_524151.1 89901680 3963389 complement(3217353..3218231) 1 NC_007908.1 hypothetical protein 3218231 3963389 Rfer_2909 Rhodoferax ferrireducens T118 hypothetical protein YP_524151.1 3217353 R 338969 CDS YP_524152.1 89901681 3963390 complement(3218228..3219457) 1 NC_007908.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 3219457 argJ 3963390 argJ Rhodoferax ferrireducens T118 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_524152.1 3218228 R 338969 CDS YP_524153.1 89901682 3963391 complement(3219555..3222320) 1 NC_007908.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 3222320 3963391 Rfer_2911 Rhodoferax ferrireducens T118 preprotein translocase subunit SecA YP_524153.1 3219555 R 338969 CDS YP_524154.1 89901683 3963392 complement(3222462..3223454) 1 NC_007908.1 peptidase M23B 3223454 3963392 Rfer_2912 Rhodoferax ferrireducens T118 peptidase M23B YP_524154.1 3222462 R 338969 CDS YP_524155.1 89901684 3960430 3223481..3223792 1 NC_007908.1 hypothetical protein 3223792 3960430 Rfer_2913 Rhodoferax ferrireducens T118 hypothetical protein YP_524155.1 3223481 D 338969 CDS YP_524156.1 89901685 3960431 3223896..3224903 1 NC_007908.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 3224903 3960431 Rfer_2914 Rhodoferax ferrireducens T118 putative sulfite oxidase subunit YedY YP_524156.1 3223896 D 338969 CDS YP_524157.1 89901686 3960432 3224903..3225544 1 NC_007908.1 ferric reductase-like protein transmembrane component-like protein 3225544 3960432 Rfer_2915 Rhodoferax ferrireducens T118 ferric reductase-like protein transmembrane component-like protein YP_524157.1 3224903 D 338969 CDS YP_524158.1 89901687 3960433 complement(3225572..3226873) 1 NC_007908.1 diaminopimelate decarboxylase 3226873 3960433 Rfer_2916 Rhodoferax ferrireducens T118 diaminopimelate decarboxylase YP_524158.1 3225572 R 338969 CDS YP_524159.1 89901688 3960434 3227092..3227421 1 NC_007908.1 frataxin-like protein 3227421 3960434 Rfer_2917 Rhodoferax ferrireducens T118 frataxin-like protein YP_524159.1 3227092 D 338969 CDS YP_524160.1 89901689 3960435 complement(3227411..3229804) 1 NC_007908.1 penicillin-binding protein 1A 3229804 3960435 Rfer_2918 Rhodoferax ferrireducens T118 penicillin-binding protein 1A YP_524160.1 3227411 R 338969 CDS YP_524161.1 89901690 3960436 3230117..3231154 1 NC_007908.1 type IV pilus assembly protein PilM 3231154 3960436 Rfer_2919 Rhodoferax ferrireducens T118 type IV pilus assembly protein PilM YP_524161.1 3230117 D 338969 CDS YP_524162.1 89901691 3960437 3231151..3231786 1 NC_007908.1 fimbrial assembly 3231786 3960437 Rfer_2920 Rhodoferax ferrireducens T118 fimbrial assembly YP_524162.1 3231151 D 338969 CDS YP_524163.1 89901692 3960438 3231799..3232470 1 NC_007908.1 pilus assembly protein PilO 3232470 3960438 Rfer_2921 Rhodoferax ferrireducens T118 pilus assembly protein PilO YP_524163.1 3231799 D 338969 CDS YP_524164.1 89901693 3960439 3232467..3233009 1 NC_007908.1 pilus assembly protein, PilQ 3233009 3960439 Rfer_2922 Rhodoferax ferrireducens T118 pilus assembly protein, PilQ YP_524164.1 3232467 D 338969 CDS YP_524165.1 89901694 3960440 3233006..3235138 1 NC_007908.1 type II and III secretion system protein 3235138 3960440 Rfer_2923 Rhodoferax ferrireducens T118 type II and III secretion system protein YP_524165.1 3233006 D 338969 CDS YP_524166.1 89901695 3960441 3235155..3237056 1 NC_007908.1 Ig-like protein, group 1 3237056 3960441 Rfer_2924 Rhodoferax ferrireducens T118 Ig-like protein, group 1 YP_524166.1 3235155 D 338969 CDS YP_524167.1 89901696 3960442 3237053..3237592 1 NC_007908.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 3237592 aroK 3960442 aroK Rhodoferax ferrireducens T118 shikimate kinase YP_524167.1 3237053 D 338969 CDS YP_524168.1 89901697 3960443 3237589..3238695 1 NC_007908.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3238695 aroB 3960443 aroB Rhodoferax ferrireducens T118 3-dehydroquinate synthase YP_524168.1 3237589 D 338969 CDS YP_524169.1 89901698 3960444 3238763..3239935 1 NC_007908.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 3239935 3960444 Rfer_2927 Rhodoferax ferrireducens T118 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_524169.1 3238763 D 338969 CDS YP_524170.1 89901699 3960445 3239974..3240627 1 NC_007908.1 hypothetical protein 3240627 3960445 Rfer_2928 Rhodoferax ferrireducens T118 hypothetical protein YP_524170.1 3239974 D 338969 CDS YP_524171.1 89901700 3960446 3240637..3241257 1 NC_007908.1 hypothetical protein 3241257 3960446 Rfer_2929 Rhodoferax ferrireducens T118 hypothetical protein YP_524171.1 3240637 D 338969 CDS YP_524172.1 89901701 3960447 3241254..3242114 1 NC_007908.1 hypothetical protein 3242114 3960447 Rfer_2930 Rhodoferax ferrireducens T118 hypothetical protein YP_524172.1 3241254 D 338969 CDS YP_524173.1 89901702 3960448 3242136..3242588 1 NC_007908.1 17 kDa surface antigen 3242588 3960448 Rfer_2931 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_524173.1 3242136 D 338969 CDS YP_524174.1 89901703 3960449 3242738..3243442 1 NC_007908.1 hypothetical protein 3243442 3960449 Rfer_2932 Rhodoferax ferrireducens T118 hypothetical protein YP_524174.1 3242738 D 338969 CDS YP_524175.1 89901704 3960868 3243614..3248347 1 NC_007908.1 glutamate synthase 3248347 3960868 Rfer_2933 Rhodoferax ferrireducens T118 glutamate synthase YP_524175.1 3243614 D 338969 CDS YP_524176.1 89901705 3960869 3248359..3249825 1 NC_007908.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3249825 gltD 3960869 gltD Rhodoferax ferrireducens T118 glutamate synthase subunit beta YP_524176.1 3248359 D 338969 CDS YP_524177.1 89901706 3960870 3249945..3250760 1 NC_007908.1 ABC transporter-like protein 3250760 3960870 Rfer_2935 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524177.1 3249945 D 338969 CDS YP_524178.1 89901707 3960871 3250757..3251539 1 NC_007908.1 hypothetical protein 3251539 3960871 Rfer_2936 Rhodoferax ferrireducens T118 hypothetical protein YP_524178.1 3250757 D 338969 CDS YP_524179.1 89901708 3960872 3251567..3252055 1 NC_007908.1 hypothetical protein 3252055 3960872 Rfer_2937 Rhodoferax ferrireducens T118 hypothetical protein YP_524179.1 3251567 D 338969 CDS YP_524180.1 89901709 3960873 3252070..3252903 1 NC_007908.1 VacJ-like protein lipoprotein 3252903 3960873 Rfer_2938 Rhodoferax ferrireducens T118 VacJ-like protein lipoprotein YP_524180.1 3252070 D 338969 CDS YP_524181.1 89901710 3960874 3252966..3253538 1 NC_007908.1 toluene tolerance 3253538 3960874 Rfer_2939 Rhodoferax ferrireducens T118 toluene tolerance YP_524181.1 3252966 D 338969 CDS YP_524182.1 89901711 3960875 3253535..3253837 1 NC_007908.1 sulfate transporter/antisigma-factor antagonist STAS 3253837 3960875 Rfer_2940 Rhodoferax ferrireducens T118 sulfate transporter/antisigma-factor antagonist STAS YP_524182.1 3253535 D 338969 CDS YP_524183.1 89901712 3960876 3253847..3254824 1 NC_007908.1 ABC transporter-like protein 3254824 3960876 Rfer_2941 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524183.1 3253847 D 338969 CDS YP_524184.1 89901713 3960877 3254821..3255576 1 NC_007908.1 hypothetical protein 3255576 3960877 Rfer_2942 Rhodoferax ferrireducens T118 hypothetical protein YP_524184.1 3254821 D 338969 CDS YP_524185.1 89901714 3960878 3255602..3255844 1 NC_007908.1 BolA-like protein 3255844 3960878 Rfer_2943 Rhodoferax ferrireducens T118 BolA-like protein YP_524185.1 3255602 D 338969 CDS YP_524186.1 89901715 3960879 3255905..3257170 1 NC_007908.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3257170 3960879 Rfer_2944 Rhodoferax ferrireducens T118 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_524186.1 3255905 D 338969 CDS YP_524187.1 89901716 3960880 3257180..3257818 1 NC_007908.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 3257818 hisG 3960880 hisG Rhodoferax ferrireducens T118 ATP phosphoribosyltransferase catalytic subunit YP_524187.1 3257180 D 338969 CDS YP_524188.1 89901717 3960881 3257837..3259180 1 NC_007908.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3259180 hisD 3960881 hisD Rhodoferax ferrireducens T118 histidinol dehydrogenase YP_524188.1 3257837 D 338969 CDS YP_524189.1 89901718 3960882 3259177..3260286 1 NC_007908.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3260286 3960882 Rfer_2947 Rhodoferax ferrireducens T118 histidinol-phosphate aminotransferase YP_524189.1 3259177 D 338969 CDS YP_524190.1 89901719 3960883 3260321..3260935 1 NC_007908.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 3260935 hisB 3960883 hisB Rhodoferax ferrireducens T118 imidazoleglycerol-phosphate dehydratase YP_524190.1 3260321 D 338969 CDS YP_524191.1 89901720 3960884 3260987..3261670 1 NC_007908.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3261670 hisH 3960884 hisH Rhodoferax ferrireducens T118 imidazole glycerol phosphate synthase subunit HisH YP_524191.1 3260987 D 338969 CDS YP_524192.1 89901721 3960885 3261815..3262555 1 NC_007908.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3262555 3960885 Rfer_2950 Rhodoferax ferrireducens T118 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_524192.1 3261815 D 338969 CDS YP_524193.1 89901722 3960886 3262571..3263371 1 NC_007908.1 imidazoleglycerol phosphate synthase, cyclase subunit 3263371 3960886 Rfer_2951 Rhodoferax ferrireducens T118 imidazoleglycerol phosphate synthase, cyclase subunit YP_524193.1 3262571 D 338969 CDS YP_524194.1 89901723 3962233 3263456..3263845 1 NC_007908.1 phosphoribosyl-AMP cyclohydrolase 3263845 3962233 Rfer_2952 Rhodoferax ferrireducens T118 phosphoribosyl-AMP cyclohydrolase YP_524194.1 3263456 D 338969 CDS YP_524195.1 89901724 3962234 3263852..3264244 1 NC_007908.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 3264244 hisE 3962234 hisE Rhodoferax ferrireducens T118 phosphoribosyl-ATP pyrophosphatase YP_524195.1 3263852 D 338969 CDS YP_524196.1 89901725 3962235 3264241..3264657 1 NC_007908.1 hypothetical protein 3264657 3962235 Rfer_2954 Rhodoferax ferrireducens T118 hypothetical protein YP_524196.1 3264241 D 338969 CDS YP_524197.1 89901726 3962236 3264657..3265028 1 NC_007908.1 histidine triad (HIT) protein 3265028 3962236 Rfer_2955 Rhodoferax ferrireducens T118 histidine triad (HIT) protein YP_524197.1 3264657 D 338969 CDS YP_524198.1 89901727 3962237 3265097..3265336 1 NC_007908.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3265336 tatA 3962237 tatA Rhodoferax ferrireducens T118 twin arginine translocase protein A YP_524198.1 3265097 D 338969 CDS YP_524199.1 89901728 3962238 3265380..3265844 1 NC_007908.1 sec-independent translocase 3265844 tatB 3962238 tatB Rhodoferax ferrireducens T118 sec-independent translocase YP_524199.1 3265380 D 338969 CDS YP_524200.1 89901729 3962239 3265844..3266635 1 NC_007908.1 Sec-independent protein translocase TatC 3266635 3962239 Rfer_2958 Rhodoferax ferrireducens T118 Sec-independent protein translocase TatC YP_524200.1 3265844 D 338969 CDS YP_524201.1 89901730 3962240 complement(3266643..3267785) 1 NC_007908.1 peptidase S1 and S6, chymotrypsin/Hap 3267785 3962240 Rfer_2959 Rhodoferax ferrireducens T118 peptidase S1 and S6, chymotrypsin/Hap YP_524201.1 3266643 R 338969 CDS YP_524202.1 89901731 3962241 3267935..3268327 1 NC_007908.1 hypothetical protein 3268327 3962241 Rfer_2960 Rhodoferax ferrireducens T118 hypothetical protein YP_524202.1 3267935 D 338969 CDS YP_524203.1 89901732 3962242 3268384..3269142 1 NC_007908.1 hypothetical protein 3269142 3962242 Rfer_2961 Rhodoferax ferrireducens T118 hypothetical protein YP_524203.1 3268384 D 338969 CDS YP_524204.1 89901733 3962243 3269157..3270206 1 NC_007908.1 4-hydroxythreonine-4-phosphate dehydrogenase 3270206 3962243 Rfer_2962 Rhodoferax ferrireducens T118 4-hydroxythreonine-4-phosphate dehydrogenase YP_524204.1 3269157 D 338969 CDS YP_524205.1 89901734 3962244 complement(3270266..3270694) 1 NC_007908.1 large conductance mechanosensitive channel protein 3270694 3962244 Rfer_2963 Rhodoferax ferrireducens T118 large conductance mechanosensitive channel protein YP_524205.1 3270266 R 338969 CDS YP_524206.1 89901735 3962245 3270858..3271472 1 NC_007908.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit 3271472 3962245 Rfer_2964 Rhodoferax ferrireducens T118 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_524206.1 3270858 D 338969 CDS YP_524207.1 89901736 3962246 3271484..3272884 1 NC_007908.1 cytochrome b/b6-like protein 3272884 3962246 Rfer_2965 Rhodoferax ferrireducens T118 cytochrome b/b6-like protein YP_524207.1 3271484 D 338969 CDS YP_524208.1 89901737 3962247 3272900..3273673 1 NC_007908.1 cytochrome c1 3273673 3962247 Rfer_2966 Rhodoferax ferrireducens T118 cytochrome c1 YP_524208.1 3272900 D 338969 CDS YP_524209.1 89901738 3962248 3273829..3274440 1 NC_007908.1 glutathione S-transferase-like protein 3274440 3962248 Rfer_2967 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_524209.1 3273829 D 338969 CDS YP_524210.1 89901739 3962249 3274459..3274986 1 NC_007908.1 ClpXP protease specificity-enhancing factor 3274986 3962249 Rfer_2968 Rhodoferax ferrireducens T118 ClpXP protease specificity-enhancing factor YP_524210.1 3274459 D 338969 CDS YP_524211.1 89901740 3962251 3275333..3276121 1 NC_007908.1 extracellular solute-binding protein 3276121 3962251 Rfer_2969 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_524211.1 3275333 D 338969 CDS YP_524212.1 89901741 3960601 3276224..3276877 1 NC_007908.1 amino acid ABC transporter permease 3276877 3960601 Rfer_2970 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_524212.1 3276224 D 338969 CDS YP_524213.1 89901742 3960602 3276870..3277634 1 NC_007908.1 ABC transporter-like protein 3277634 3960602 Rfer_2971 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524213.1 3276870 D 338969 CDS YP_524214.1 89901743 3960603 3277891..3279729 1 NC_007908.1 poly-beta-hydroxybutyrate polymerase-like protein 3279729 3960603 Rfer_2972 Rhodoferax ferrireducens T118 poly-beta-hydroxybutyrate polymerase-like protein YP_524214.1 3277891 D 338969 CDS YP_524215.1 89901744 3960604 3279719..3280156 1 NC_007908.1 hypothetical protein 3280156 3960604 Rfer_2973 Rhodoferax ferrireducens T118 hypothetical protein YP_524215.1 3279719 D 338969 CDS YP_524216.1 89901745 3960605 3280254..3281675 1 NC_007908.1 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 3281675 3960605 Rfer_2974 Rhodoferax ferrireducens T118 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase YP_524216.1 3280254 D 338969 CDS YP_524217.1 89901746 3960606 3281686..3282861 1 NC_007908.1 acetate kinase 3282861 3960606 Rfer_2975 Rhodoferax ferrireducens T118 acetate kinase YP_524217.1 3281686 D 338969 CDS YP_524218.1 89901747 3960607 3282938..3283681 1 NC_007908.1 pseudouridine synthase Rsu 3283681 3960607 Rfer_2976 Rhodoferax ferrireducens T118 pseudouridine synthase Rsu YP_524218.1 3282938 D 338969 CDS YP_524219.1 89901748 3960608 3283710..3284606 1 NC_007908.1 hypothetical protein 3284606 3960608 Rfer_2977 Rhodoferax ferrireducens T118 hypothetical protein YP_524219.1 3283710 D 338969 CDS YP_524220.1 89901749 3960609 3284587..3285411 1 NC_007908.1 molybdopterin-binding domain-containing protein 3285411 3960609 Rfer_2978 Rhodoferax ferrireducens T118 molybdopterin-binding domain-containing protein YP_524220.1 3284587 D 338969 CDS YP_524221.1 89901750 3960610 3285624..3287039 1 NC_007908.1 glutamine synthetase 3287039 3960610 Rfer_2979 Rhodoferax ferrireducens T118 glutamine synthetase YP_524221.1 3285624 D 338969 CDS YP_524222.1 89901751 3960611 3287201..3287743 1 NC_007908.1 putative signal peptide protein 3287743 3960611 Rfer_2980 Rhodoferax ferrireducens T118 putative signal peptide protein YP_524222.1 3287201 D 338969 CDS YP_524223.1 89901752 3960612 3287749..3288855 1 NC_007908.1 signal transduction histidine kinase NtrB 3288855 3960612 Rfer_2981 Rhodoferax ferrireducens T118 signal transduction histidine kinase NtrB YP_524223.1 3287749 D 338969 CDS YP_524224.1 89901753 3960613 3288890..3290452 1 NC_007908.1 nitrogen metabolism transcriptional regulator NtrC 3290452 3960613 Rfer_2982 Rhodoferax ferrireducens T118 nitrogen metabolism transcriptional regulator NtrC YP_524224.1 3288890 D 338969 CDS YP_524225.1 89901754 3960614 complement(3290508..3291332) 1 NC_007908.1 exodeoxyribonuclease III 3291332 3960614 Rfer_2983 Rhodoferax ferrireducens T118 exodeoxyribonuclease III YP_524225.1 3290508 R 338969 CDS YP_524226.1 89901755 3960615 complement(3291348..3291944) 1 NC_007908.1 hypothetical protein 3291944 3960615 Rfer_2984 Rhodoferax ferrireducens T118 hypothetical protein YP_524226.1 3291348 R 338969 CDS YP_524227.1 89901756 3960616 complement(3291945..3292439) 1 NC_007908.1 dihydrofolate reductase 3292439 3960616 Rfer_2985 Rhodoferax ferrireducens T118 dihydrofolate reductase YP_524227.1 3291945 R 338969 CDS YP_524228.1 89901757 3960617 complement(3292440..3293273) 1 NC_007908.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3293273 thyA 3960617 thyA Rhodoferax ferrireducens T118 thymidylate synthase YP_524228.1 3292440 R 338969 CDS YP_524229.1 89901758 3960618 complement(3293275..3293589) 1 NC_007908.1 CcdB-like protein toxin protein 3293589 3960618 Rfer_2987 Rhodoferax ferrireducens T118 CcdB-like protein toxin protein YP_524229.1 3293275 R 338969 CDS YP_524230.1 89901759 3960619 complement(3293601..3293840) 1 NC_007908.1 similar to CcdA; potential post-segregation antitoxin 3293840 3960619 Rfer_2988 Rhodoferax ferrireducens T118 potential post-segregation antitoxin YP_524230.1 3293601 R 338969 CDS YP_524231.1 89901760 3960334 complement(3293900..3295333) 1 NC_007908.1 FAD linked oxidase-like protein 3295333 3960334 Rfer_2989 Rhodoferax ferrireducens T118 FAD linked oxidase-like protein YP_524231.1 3293900 R 338969 CDS YP_524232.1 89901761 3960335 complement(3295338..3295673) 1 NC_007908.1 membrane protein-like protein 3295673 3960335 Rfer_2990 Rhodoferax ferrireducens T118 membrane protein-like protein YP_524232.1 3295338 R 338969 CDS YP_524233.1 89901762 3960336 3295755..3297005 1 NC_007908.1 ribonuclease BN 3297005 3960336 Rfer_2991 Rhodoferax ferrireducens T118 ribonuclease BN YP_524233.1 3295755 D 338969 CDS YP_524234.1 89901763 3960337 3297274..3300318 1 NC_007908.1 glycosyl transferase family protein 3300318 3960337 Rfer_2992 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_524234.1 3297274 D 338969 CDS YP_524235.1 89901764 3960338 complement(3300350..3301375) 1 NC_007908.1 asparaginase 3301375 3960338 Rfer_2993 Rhodoferax ferrireducens T118 asparaginase YP_524235.1 3300350 R 338969 CDS YP_524236.1 89901765 3960339 3301478..3302152 1 NC_007908.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 3302152 3960339 Rfer_2994 Rhodoferax ferrireducens T118 LexA repressor YP_524236.1 3301478 D 338969 CDS YP_524237.1 89901766 3960340 3302186..3302545 1 NC_007908.1 hypothetical protein 3302545 3960340 Rfer_2995 Rhodoferax ferrireducens T118 hypothetical protein YP_524237.1 3302186 D 338969 CDS YP_524238.1 89901767 3960341 3302639..3303652 1 NC_007908.1 D-isomer specific 2-hydroxyacid dehydrogenase 3303652 3960341 Rfer_2996 Rhodoferax ferrireducens T118 D-isomer specific 2-hydroxyacid dehydrogenase YP_524238.1 3302639 D 338969 CDS YP_524239.1 89901768 3960342 complement(3303740..3305101) 1 NC_007908.1 three-deoxy-D-manno-octulosonic-acid transferase-like protein 3305101 3960342 Rfer_2997 Rhodoferax ferrireducens T118 three-deoxy-D-manno-octulosonic-acid transferase-like protein YP_524239.1 3303740 R 338969 CDS YP_524240.1 89901769 3960343 complement(3305098..3306159) 1 NC_007908.1 lipopolysaccharide heptosyltransferase I 3306159 3960343 Rfer_2998 Rhodoferax ferrireducens T118 lipopolysaccharide heptosyltransferase I YP_524240.1 3305098 R 338969 CDS YP_524241.1 89901770 3960344 complement(3306156..3307583) 1 NC_007908.1 phosphomannomutase 3307583 3960344 Rfer_2999 Rhodoferax ferrireducens T118 phosphomannomutase YP_524241.1 3306156 R 338969 CDS YP_524242.1 89901771 3960345 3307705..3309252 1 NC_007908.1 AraC family transcriptional regulator 3309252 3960345 Rfer_3000 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_524242.1 3307705 D 338969 CDS YP_524243.1 89901772 3960346 3309298..3309831 1 NC_007908.1 methylated-DNA--protein-cysteine methyltransferase 3309831 3960346 Rfer_3001 Rhodoferax ferrireducens T118 methylated-DNA--protein-cysteine methyltransferase YP_524243.1 3309298 D 338969 CDS YP_524244.1 89901773 3960347 3309828..3310724 1 NC_007908.1 hypothetical protein 3310724 3960347 Rfer_3002 Rhodoferax ferrireducens T118 hypothetical protein YP_524244.1 3309828 D 338969 CDS YP_524245.1 89901774 3960348 3311254..3311829 1 NC_007908.1 hypothetical protein 3311829 3960348 Rfer_3003 Rhodoferax ferrireducens T118 hypothetical protein YP_524245.1 3311254 D 338969 CDS YP_524246.1 89901775 3960349 complement(3311878..3312030) 1 NC_007908.1 hypothetical protein 3312030 3960349 Rfer_3004 Rhodoferax ferrireducens T118 hypothetical protein YP_524246.1 3311878 R 338969 CDS YP_524247.1 89901776 3960350 3312297..3312701 1 NC_007908.1 hypothetical protein 3312701 3960350 Rfer_3005 Rhodoferax ferrireducens T118 hypothetical protein YP_524247.1 3312297 D 338969 CDS YP_524248.1 89901777 3960351 3312698..3315091 1 NC_007908.1 ATP-dependent protease La 3315091 3960351 Rfer_3006 Rhodoferax ferrireducens T118 ATP-dependent protease La YP_524248.1 3312698 D 338969 CDS YP_524249.1 89901778 3960352 3315145..3315354 1 NC_007908.1 hypothetical protein 3315354 3960352 Rfer_3007 Rhodoferax ferrireducens T118 hypothetical protein YP_524249.1 3315145 D 338969 CDS YP_524250.1 89901779 3960353 complement(3315448..3315768) 1 NC_007908.1 transport protein 3315768 3960353 Rfer_3008 Rhodoferax ferrireducens T118 transport protein YP_524250.1 3315448 R 338969 CDS YP_524251.1 89901780 3960354 3315936..3317570 1 NC_007908.1 chaperonin GroEL 3317570 3960354 Rfer_3009 Rhodoferax ferrireducens T118 chaperonin GroEL YP_524251.1 3315936 D 338969 CDS YP_524252.1 89901781 3960355 3317595..3318053 1 NC_007908.1 hypothetical protein 3318053 3960355 Rfer_3010 Rhodoferax ferrireducens T118 hypothetical protein YP_524252.1 3317595 D 338969 CDS YP_524253.1 89901782 3960356 complement(3318546..3320315) 1 NC_007908.1 ribonucleotide reductase large subunit 3320315 3960356 Rfer_3011 Rhodoferax ferrireducens T118 ribonucleotide reductase large subunit YP_524253.1 3318546 R 338969 CDS YP_524254.1 89901783 3960357 complement(3320406..3322265) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 3322265 3960357 Rfer_3012 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_524254.1 3320406 R 338969 CDS YP_524255.1 89901784 3960358 complement(3322252..3324885) 1 NC_007908.1 MCP methyltransferase, CheR-type 3324885 3960358 Rfer_3013 Rhodoferax ferrireducens T118 MCP methyltransferase, CheR-type YP_524255.1 3322252 R 338969 CDS YP_524256.1 89901785 3960359 complement(3324999..3325418) 1 NC_007908.1 thioesterase superfamily protein 3325418 3960359 Rfer_3014 Rhodoferax ferrireducens T118 thioesterase superfamily protein YP_524256.1 3324999 R 338969 CDS YP_524257.1 89901786 3960360 complement(3325415..3326008) 1 NC_007908.1 chorismate lyase 3326008 3960360 Rfer_3015 Rhodoferax ferrireducens T118 chorismate lyase YP_524257.1 3325415 R 338969 CDS YP_524258.1 89901787 3960361 complement(3326005..3326916) 1 NC_007908.1 hypothetical protein 3326916 3960361 Rfer_3016 Rhodoferax ferrireducens T118 hypothetical protein YP_524258.1 3326005 R 338969 CDS YP_524259.1 89901788 3960362 complement(3327007..3327789) 1 NC_007908.1 short chain dehydrogenase 3327789 3960362 Rfer_3017 Rhodoferax ferrireducens T118 short chain dehydrogenase YP_524259.1 3327007 R 338969 CDS YP_524260.1 89901789 3960363 3327899..3329617 1 NC_007908.1 electron-transferring-flavoprotein dehydrogenase 3329617 3960363 Rfer_3018 Rhodoferax ferrireducens T118 electron-transferring-flavoprotein dehydrogenase YP_524260.1 3327899 D 338969 CDS YP_524261.1 89901790 3960366 3329895..3331106 1 NC_007908.1 glycine cleavage system T protein 3331106 3960366 Rfer_3019 Rhodoferax ferrireducens T118 glycine cleavage system T protein YP_524261.1 3329895 D 338969 CDS YP_524262.1 89901791 3960367 3331146..3331520 1 NC_007908.1 glycine cleavage system H protein 3331520 3960367 Rfer_3020 Rhodoferax ferrireducens T118 glycine cleavage system H protein YP_524262.1 3331146 D 338969 CDS YP_524263.1 89901792 3960368 3331610..3334513 1 NC_007908.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3334513 3960368 Rfer_3021 Rhodoferax ferrireducens T118 glycine dehydrogenase YP_524263.1 3331610 D 338969 CDS YP_524264.1 89901793 3960369 complement(3334617..3336731) 1 NC_007908.1 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane 3336731 3960369 Rfer_3022 Rhodoferax ferrireducens T118 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_524264.1 3334617 R 338969 CDS YP_524265.1 89901794 3960370 complement(3337191..3338804) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 3338804 3960370 Rfer_3023 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524265.1 3337191 R 338969 CDS YP_524266.1 89901795 3960371 complement(3338911..3339918) 1 NC_007908.1 dihydrouridine synthase 3339918 3960371 Rfer_3024 Rhodoferax ferrireducens T118 dihydrouridine synthase YP_524266.1 3338911 R 338969 CDS YP_524267.1 89901796 3961000 complement(3339925..3340464) 1 NC_007908.1 cyclic nucleotide-binding domain-containing protein 3340464 3961000 Rfer_3025 Rhodoferax ferrireducens T118 cyclic nucleotide-binding domain-containing protein YP_524267.1 3339925 R 338969 CDS YP_524268.1 89901797 3961001 complement(3340683..3342011) 1 NC_007908.1 hypothetical protein 3342011 3961001 Rfer_3026 Rhodoferax ferrireducens T118 hypothetical protein YP_524268.1 3340683 R 338969 CDS YP_524269.1 89901798 3961002 3342036..3342884 1 NC_007908.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3342884 apaH 3961002 apaH Rhodoferax ferrireducens T118 diadenosine tetraphosphatase YP_524269.1 3342036 D 338969 CDS YP_524270.1 89901799 3961003 complement(3342906..3344426) 1 NC_007908.1 DEAD/DEAH box helicase-like protein 3344426 3961003 Rfer_3028 Rhodoferax ferrireducens T118 DEAD/DEAH box helicase-like protein YP_524270.1 3342906 R 338969 CDS YP_524271.1 89901800 3961004 3344585..3344791 1 NC_007908.1 hypothetical protein 3344791 3961004 Rfer_3029 Rhodoferax ferrireducens T118 hypothetical protein YP_524271.1 3344585 D 338969 CDS YP_524272.1 89901801 3961005 3344867..3345715 1 NC_007908.1 chromosome segregation and condensation protein ScpA 3345715 3961005 Rfer_3030 Rhodoferax ferrireducens T118 chromosome segregation and condensation protein ScpA YP_524272.1 3344867 D 338969 CDS YP_524273.1 89901802 3961006 3345724..3347334 1 NC_007908.1 L-aspartate oxidase 3347334 3961006 Rfer_3031 Rhodoferax ferrireducens T118 L-aspartate oxidase YP_524273.1 3345724 D 338969 CDS YP_524274.1 89901803 3961007 3347370..3347777 1 NC_007908.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 3347777 3961007 Rfer_3032 Rhodoferax ferrireducens T118 aspartate alpha-decarboxylase YP_524274.1 3347370 D 338969 CDS YP_524275.1 89901804 3961008 3347774..3348658 1 NC_007908.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3348658 panB 3961008 panB Rhodoferax ferrireducens T118 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_524275.1 3347774 D 338969 CDS YP_524276.1 89901805 3961009 3348670..3349518 1 NC_007908.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3349518 panC 3961009 panC Rhodoferax ferrireducens T118 pantoate--beta-alanine ligase YP_524276.1 3348670 D 338969 CDS YP_524277.1 89901806 3961010 complement(3349544..3351988) 1 NC_007908.1 UvrD/REP helicase 3351988 3961010 Rfer_3035 Rhodoferax ferrireducens T118 UvrD/REP helicase YP_524277.1 3349544 R 338969 CDS YP_524278.1 89901807 3961011 3352034..3352705 1 NC_007908.1 hypothetical protein 3352705 3961011 Rfer_3036 Rhodoferax ferrireducens T118 hypothetical protein YP_524278.1 3352034 D 338969 CDS YP_524279.1 89901808 3961012 3352880..3353857 1 NC_007908.1 guanosine 5'-monophosphate oxidoreductase 3353857 3961012 Rfer_3037 Rhodoferax ferrireducens T118 guanosine 5'-monophosphate oxidoreductase YP_524279.1 3352880 D 338969 CDS YP_524280.1 89901809 3961013 3354004..3354891 1 NC_007908.1 2-hydroxy-3-oxopropionate reductase 3354891 3961013 Rfer_3038 Rhodoferax ferrireducens T118 2-hydroxy-3-oxopropionate reductase YP_524280.1 3354004 D 338969 CDS YP_524281.1 89901810 3961015 3355229..3356248 1 NC_007908.1 phage integrase 3356248 3961015 Rfer_3039 Rhodoferax ferrireducens T118 phage integrase YP_524281.1 3355229 D 338969 CDS YP_524282.1 89901811 3961016 3357208..3363876 1 NC_007908.1 DNA helicase-like protein 3363876 3961016 Rfer_3040 Rhodoferax ferrireducens T118 DNA helicase-like protein YP_524282.1 3357208 D 338969 CDS YP_524283.1 89901812 3961017 3363902..3366988 1 NC_007908.1 ABC transporter 3366988 3961017 Rfer_3041 Rhodoferax ferrireducens T118 ABC transporter YP_524283.1 3363902 D 338969 CDS YP_524284.1 89901813 3962360 complement(3367004..3369646) 1 NC_007908.1 putative GTP-binding protein 3369646 3962360 Rfer_3042 Rhodoferax ferrireducens T118 putative GTP-binding protein YP_524284.1 3367004 R 338969 CDS YP_524285.1 89901814 3962361 complement(3369643..3370785) 1 NC_007908.1 metallophosphoesterase 3370785 3962361 Rfer_3043 Rhodoferax ferrireducens T118 metallophosphoesterase YP_524285.1 3369643 R 338969 CDS YP_524286.1 89901815 3962363 complement(3371482..3371952) 1 NC_007908.1 hypothetical protein 3371952 3962363 Rfer_3045 Rhodoferax ferrireducens T118 hypothetical protein YP_524286.1 3371482 R 338969 CDS YP_524287.1 89901816 3962364 3372013..3373062 1 NC_007908.1 transcriptional factor 3373062 3962364 Rfer_3046 Rhodoferax ferrireducens T118 transcriptional factor YP_524287.1 3372013 D 338969 CDS YP_524288.1 89901817 3962365 3373233..3373943 1 NC_007908.1 hypothetical protein 3373943 3962365 Rfer_3047 Rhodoferax ferrireducens T118 hypothetical protein YP_524288.1 3373233 D 338969 CDS YP_524289.1 89901818 3962366 3374044..3374316 1 NC_007908.1 hypothetical protein 3374316 3962366 Rfer_3048 Rhodoferax ferrireducens T118 hypothetical protein YP_524289.1 3374044 D 338969 CDS YP_524290.1 89901819 3962367 3374313..3375191 1 NC_007908.1 hypothetical protein 3375191 3962367 Rfer_3049 Rhodoferax ferrireducens T118 hypothetical protein YP_524290.1 3374313 D 338969 CDS YP_524291.1 89901820 3962368 3375336..3376106 1 NC_007908.1 hypothetical protein 3376106 3962368 Rfer_3050 Rhodoferax ferrireducens T118 hypothetical protein YP_524291.1 3375336 D 338969 CDS YP_524292.1 89901821 3962369 3376111..3376779 1 NC_007908.1 hypothetical protein 3376779 3962369 Rfer_3051 Rhodoferax ferrireducens T118 hypothetical protein YP_524292.1 3376111 D 338969 CDS YP_524293.1 89901822 3962370 3376865..3377566 1 NC_007908.1 twin-arginine translocation pathway signal protein 3377566 3962370 Rfer_3052 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524293.1 3376865 D 338969 CDS YP_524294.1 89901823 3962371 3377550..3377909 1 NC_007908.1 hypothetical protein 3377909 3962371 Rfer_3053 Rhodoferax ferrireducens T118 hypothetical protein YP_524294.1 3377550 D 338969 CDS YP_524295.1 89901824 3962372 complement(3378196..3379143) 1 NC_007908.1 hypothetical protein 3379143 3962372 Rfer_3054 Rhodoferax ferrireducens T118 hypothetical protein YP_524295.1 3378196 R 338969 CDS YP_524296.1 89901825 3962373 complement(3379150..3379560) 1 NC_007908.1 hypothetical protein 3379560 3962373 Rfer_3055 Rhodoferax ferrireducens T118 hypothetical protein YP_524296.1 3379150 R 338969 CDS YP_524297.1 89901826 3962374 complement(3379650..3380051) 1 NC_007908.1 hypothetical protein 3380051 3962374 Rfer_3056 Rhodoferax ferrireducens T118 hypothetical protein YP_524297.1 3379650 R 338969 CDS YP_524298.1 89901827 3962375 complement(3381015..3381590) 1 NC_007908.1 hypothetical protein 3381590 3962375 Rfer_3057 Rhodoferax ferrireducens T118 hypothetical protein YP_524298.1 3381015 R 338969 CDS YP_524299.1 89901828 3962376 complement(3381844..3382215) 1 NC_007908.1 hypothetical protein 3382215 3962376 Rfer_3058 Rhodoferax ferrireducens T118 hypothetical protein YP_524299.1 3381844 R 338969 CDS YP_524300.1 89901829 3962377 complement(3382274..3383797) 1 NC_007908.1 transposase IS66 3383797 3962377 Rfer_3059 Rhodoferax ferrireducens T118 transposase IS66 YP_524300.1 3382274 R 338969 CDS YP_524301.1 89901830 3962378 complement(3383879..3384214) 1 NC_007908.1 IS66 Orf2 like 3384214 3962378 Rfer_3060 Rhodoferax ferrireducens T118 IS66 Orf2 like YP_524301.1 3383879 R 338969 CDS YP_524302.1 89901831 3962379 complement(3384223..3384627) 1 NC_007908.1 transposase IS3/IS911 3384627 3962379 Rfer_3061 Rhodoferax ferrireducens T118 transposase IS3/IS911 YP_524302.1 3384223 R 338969 CDS YP_524303.1 89901832 3962626 complement(3385294..3385767) 1 NC_007908.1 hypothetical protein 3385767 3962626 Rfer_3062 Rhodoferax ferrireducens T118 hypothetical protein YP_524303.1 3385294 R 338969 CDS YP_524304.1 89901833 3962627 complement(3386050..3387357) 1 NC_007908.1 hypothetical protein 3387357 3962627 Rfer_3063 Rhodoferax ferrireducens T118 hypothetical protein YP_524304.1 3386050 R 338969 CDS YP_524305.1 89901834 3962628 complement(3387927..3388208) 1 NC_007908.1 hypothetical protein 3388208 3962628 Rfer_3064 Rhodoferax ferrireducens T118 hypothetical protein YP_524305.1 3387927 R 338969 CDS YP_524306.1 89901835 3962629 complement(3388770..3389015) 1 NC_007908.1 hypothetical protein 3389015 3962629 Rfer_3065 Rhodoferax ferrireducens T118 hypothetical protein YP_524306.1 3388770 R 338969 CDS YP_524307.1 89901836 3962630 3389363..3389704 1 NC_007908.1 XRE family transcriptional regulator 3389704 3962630 Rfer_3066 Rhodoferax ferrireducens T118 XRE family transcriptional regulator YP_524307.1 3389363 D 338969 CDS YP_524308.1 89901837 3962631 complement(3389873..3390115) 1 NC_007908.1 hypothetical protein 3390115 3962631 Rfer_3067 Rhodoferax ferrireducens T118 hypothetical protein YP_524308.1 3389873 R 338969 CDS YP_524309.1 89901838 3962632 complement(3391399..3391638) 1 NC_007908.1 hypothetical protein 3391638 3962632 Rfer_3068 Rhodoferax ferrireducens T118 hypothetical protein YP_524309.1 3391399 R 338969 CDS YP_524310.1 89901839 3962633 3393070..3393936 1 NC_007908.1 hypothetical protein 3393936 3962633 Rfer_3069 Rhodoferax ferrireducens T118 hypothetical protein YP_524310.1 3393070 D 338969 CDS YP_524311.1 89901840 3962634 3394443..3396623 1 NC_007908.1 flagella/sporulation; sigma 28 3396623 3962634 Rfer_3070 Rhodoferax ferrireducens T118 sigma 28 YP_524311.1 3394443 D 338969 CDS YP_524312.1 89901841 3962635 3396620..3398128 1 NC_007908.1 hypothetical protein 3398128 3962635 Rfer_3071 Rhodoferax ferrireducens T118 hypothetical protein YP_524312.1 3396620 D 338969 CDS YP_524313.1 89901842 3962636 3398143..3401043 1 NC_007908.1 endonuclease 3401043 3962636 Rfer_3072 Rhodoferax ferrireducens T118 endonuclease YP_524313.1 3398143 D 338969 CDS YP_524314.1 89901843 3962637 3401027..3402031 1 NC_007908.1 hypothetical protein 3402031 3962637 Rfer_3073 Rhodoferax ferrireducens T118 hypothetical protein YP_524314.1 3401027 D 338969 CDS YP_524315.1 89901844 3962638 3402028..3403812 1 NC_007908.1 hypothetical protein 3403812 3962638 Rfer_3074 Rhodoferax ferrireducens T118 hypothetical protein YP_524315.1 3402028 D 338969 CDS YP_524316.1 89901845 3962639 3403830..3404288 1 NC_007908.1 DNA mismatch endonuclease vsr 3404288 3962639 Rfer_3075 Rhodoferax ferrireducens T118 DNA mismatch endonuclease vsr YP_524316.1 3403830 D 338969 CDS YP_524317.1 89901846 3962640 3404376..3405059 1 NC_007908.1 hypothetical protein 3405059 3962640 Rfer_3076 Rhodoferax ferrireducens T118 hypothetical protein YP_524317.1 3404376 D 338969 CDS YP_524318.1 89901847 3962641 complement(3405240..3406793) 1 NC_007908.1 DNA-cytosine methyltransferase 3406793 3962641 Rfer_3077 Rhodoferax ferrireducens T118 DNA-cytosine methyltransferase YP_524318.1 3405240 R 338969 CDS YP_524319.1 89901848 3962642 3407569..3408648 1 NC_007908.1 hypothetical protein 3408648 3962642 Rfer_3078 Rhodoferax ferrireducens T118 hypothetical protein YP_524319.1 3407569 D 338969 CDS YP_524320.1 89901849 3962643 3410511..3412103 1 NC_007908.1 radical SAM family protein 3412103 3962643 Rfer_3079 Rhodoferax ferrireducens T118 radical SAM family protein YP_524320.1 3410511 D 338969 CDS YP_524321.1 89901850 3962644 3412993..3413997 1 NC_007908.1 sodium/calcium exchanger membrane protein 3413997 3962644 Rfer_3080 Rhodoferax ferrireducens T118 sodium/calcium exchanger membrane protein YP_524321.1 3412993 D 338969 CDS YP_524322.1 89901851 3963277 complement(3414292..3415542) 1 NC_007908.1 hypothetical protein 3415542 3963277 Rfer_3081 Rhodoferax ferrireducens T118 hypothetical protein YP_524322.1 3414292 R 338969 CDS YP_524323.1 89901852 3963278 complement(3416055..3416660) 1 NC_007908.1 two component LuxR family transcriptional regulator 3416660 3963278 Rfer_3082 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_524323.1 3416055 R 338969 CDS YP_524324.1 89901853 3963279 complement(3416653..3418278) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3418278 3963279 Rfer_3083 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524324.1 3416653 R 338969 CDS YP_524325.1 89901854 3963280 complement(3419359..3421842) 1 NC_007908.1 arsenate reductase (azurin) 3421842 3963280 Rfer_3084 Rhodoferax ferrireducens T118 arsenate reductase (azurin) YP_524325.1 3419359 R 338969 CDS YP_524326.1 89901855 3963281 complement(3421853..3422380) 1 NC_007908.1 twin-arginine translocation pathway signal protein 3422380 3963281 Rfer_3085 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524326.1 3421853 R 338969 CDS YP_524327.1 89901856 3963282 3422553..3423416 1 NC_007908.1 phosphonate-binding periplasmic protein 3423416 3963282 Rfer_3086 Rhodoferax ferrireducens T118 phosphonate-binding periplasmic protein YP_524327.1 3422553 D 338969 CDS YP_524328.1 89901857 3963283 3423416..3424861 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3424861 3963283 Rfer_3087 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524328.1 3423416 D 338969 CDS YP_524329.1 89901858 3963284 3424858..3426168 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 3426168 3963284 Rfer_3088 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_524329.1 3424858 D 338969 CDS YP_524330.1 89901859 3963285 complement(3426193..3426702) 1 NC_007908.1 molybdopterin-guanine dinucleotide biosynthesis protein B 3426702 3963285 Rfer_3089 Rhodoferax ferrireducens T118 molybdopterin-guanine dinucleotide biosynthesis protein B YP_524330.1 3426193 R 338969 CDS YP_524331.1 89901860 3963286 complement(3426699..3428336) 1 NC_007908.1 4Fe-4S ferredoxin 3428336 3963286 Rfer_3090 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_524331.1 3426699 R 338969 CDS YP_524332.1 89901861 3963287 complement(3428333..3429043) 1 NC_007908.1 hypothetical protein 3429043 3963287 Rfer_3091 Rhodoferax ferrireducens T118 hypothetical protein YP_524332.1 3428333 R 338969 CDS YP_524333.1 89901862 3963288 complement(3429052..3429396) 1 NC_007908.1 hypothetical protein 3429396 3963288 Rfer_3092 Rhodoferax ferrireducens T118 hypothetical protein YP_524333.1 3429052 R 338969 CDS YP_524334.1 89901863 3963289 complement(3429393..3430085) 1 NC_007908.1 4Fe-4S ferredoxin 3430085 3963289 Rfer_3093 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_524334.1 3429393 R 338969 CDS YP_524335.1 89901864 3963290 complement(3430101..3432677) 1 NC_007908.1 molybdopterin oxidoreductase 3432677 3963290 Rfer_3094 Rhodoferax ferrireducens T118 molybdopterin oxidoreductase YP_524335.1 3430101 R 338969 CDS YP_524336.1 89901865 3963291 3433060..3433914 1 NC_007908.1 phosphonate-binding periplasmic protein 3433914 3963291 Rfer_3095 Rhodoferax ferrireducens T118 phosphonate-binding periplasmic protein YP_524336.1 3433060 D 338969 CDS YP_524337.1 89901866 3963292 3433914..3435386 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3435386 3963292 Rfer_3096 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524337.1 3433914 D 338969 CDS YP_524338.1 89901867 3963293 3435400..3436683 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 3436683 3963293 Rfer_3097 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_524338.1 3435400 D 338969 CDS YP_524339.1 89901868 3963295 complement(3437835..3438119) 1 NC_007908.1 hypothetical protein 3438119 3963295 Rfer_3099 Rhodoferax ferrireducens T118 hypothetical protein YP_524339.1 3437835 R 338969 CDS YP_524340.1 89901869 3963296 3438311..3439270 1 NC_007908.1 RpiR family transcriptional regulator 3439270 3963296 Rfer_3100 Rhodoferax ferrireducens T118 RpiR family transcriptional regulator YP_524340.1 3438311 D 338969 CDS YP_524341.1 89901870 3962114 3439267..3440253 1 NC_007908.1 peptidase T2, asparaginase 2 3440253 3962114 Rfer_3101 Rhodoferax ferrireducens T118 peptidase T2, asparaginase 2 YP_524341.1 3439267 D 338969 CDS YP_524342.1 89901871 3962115 3440291..3442222 1 NC_007908.1 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 3442222 3962115 Rfer_3102 Rhodoferax ferrireducens T118 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_524342.1 3440291 D 338969 CDS YP_524343.1 89901872 3962116 3442293..3443852 1 NC_007908.1 extracellular solute-binding protein 3443852 3962116 Rfer_3103 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_524343.1 3442293 D 338969 CDS YP_524344.1 89901873 3962117 3443938..3444858 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3444858 3962117 Rfer_3104 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524344.1 3443938 D 338969 CDS YP_524345.1 89901874 3962118 3444866..3445789 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3445789 3962118 Rfer_3105 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524345.1 3444866 D 338969 CDS YP_524346.1 89901875 3962119 3445802..3446896 1 NC_007908.1 peptidase S58, DmpA 3446896 3962119 Rfer_3106 Rhodoferax ferrireducens T118 peptidase S58, DmpA YP_524346.1 3445802 D 338969 CDS YP_524347.1 89901876 3962120 3446893..3447711 1 NC_007908.1 peptidase M55, D-aminopeptidase 3447711 3962120 Rfer_3107 Rhodoferax ferrireducens T118 peptidase M55, D-aminopeptidase YP_524347.1 3446893 D 338969 CDS YP_524348.1 89901877 3962121 3447747..3448526 1 NC_007908.1 aspartate racemase 3448526 3962121 Rfer_3108 Rhodoferax ferrireducens T118 aspartate racemase YP_524348.1 3447747 D 338969 CDS YP_524349.1 89901878 3962122 3449108..3449377 1 NC_007908.1 hypothetical protein 3449377 3962122 Rfer_3109 Rhodoferax ferrireducens T118 hypothetical protein YP_524349.1 3449108 D 338969 CDS YP_524350.1 89901879 3962123 3449445..3449807 1 NC_007908.1 hypothetical protein 3449807 3962123 Rfer_3110 Rhodoferax ferrireducens T118 hypothetical protein YP_524350.1 3449445 D 338969 CDS YP_524351.1 89901880 3962124 complement(3449863..3450369) 1 NC_007908.1 hypothetical protein 3450369 3962124 Rfer_3111 Rhodoferax ferrireducens T118 hypothetical protein YP_524351.1 3449863 R 338969 CDS YP_524352.1 89901881 3962125 complement(3450498..3451226) 1 NC_007908.1 putative glutathione S-transferase P subunit 3451226 3962125 Rfer_3112 Rhodoferax ferrireducens T118 putative glutathione S-transferase P subunit YP_524352.1 3450498 R 338969 CDS YP_524353.1 89901882 3962126 complement(3451333..3451962) 1 NC_007908.1 lysine exporter protein LysE/YggA 3451962 3962126 Rfer_3113 Rhodoferax ferrireducens T118 lysine exporter protein LysE/YggA YP_524353.1 3451333 R 338969 CDS YP_524354.1 89901883 3962127 complement(3452278..3453162) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3453162 3962127 Rfer_3114 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524354.1 3452278 R 338969 CDS YP_524355.1 89901884 3962128 complement(3453172..3453990) 1 NC_007908.1 ABC transporter-like protein 3453990 3962128 Rfer_3115 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524355.1 3453172 R 338969 CDS YP_524356.1 89901885 3962129 complement(3454004..3455014) 1 NC_007908.1 ABC transporter substrate-binding protein 3455014 3962129 Rfer_3116 Rhodoferax ferrireducens T118 ABC transporter substrate-binding protein YP_524356.1 3454004 R 338969 CDS YP_524357.1 89901886 3962130 complement(3455325..3456407) 1 NC_007908.1 porin 3456407 3962130 Rfer_3117 Rhodoferax ferrireducens T118 porin YP_524357.1 3455325 R 338969 CDS YP_524358.1 89901887 3962131 complement(3456731..3457741) 1 NC_007908.1 ABC transporter substrate-binding protein 3457741 3962131 Rfer_3118 Rhodoferax ferrireducens T118 ABC transporter substrate-binding protein YP_524358.1 3456731 R 338969 CDS YP_524359.1 89901888 3962132 complement(3458105..3459769) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 3459769 3962132 Rfer_3119 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524359.1 3458105 R 338969 CDS YP_524360.1 89901889 3962516 3460033..3460752 1 NC_007908.1 two component transcriptional regulator 3460752 3962516 Rfer_3120 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_524360.1 3460033 D 338969 CDS YP_524361.1 89901890 3962517 3460745..3462118 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3462118 3962517 Rfer_3121 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524361.1 3460745 D 338969 CDS YP_524362.1 89901891 3962518 3462558..3463103 1 NC_007908.1 phasin 3463103 3962518 Rfer_3122 Rhodoferax ferrireducens T118 phasin YP_524362.1 3462558 D 338969 CDS YP_524363.1 89901892 3962519 complement(3463390..3463926) 1 NC_007908.1 cytochrome B561 3463926 3962519 Rfer_3123 Rhodoferax ferrireducens T118 cytochrome B561 YP_524363.1 3463390 R 338969 CDS YP_524364.1 89901893 3962520 complement(3464014..3465009) 1 NC_007908.1 cytochrome-c peroxidase 3465009 3962520 Rfer_3124 Rhodoferax ferrireducens T118 cytochrome-c peroxidase YP_524364.1 3464014 R 338969 CDS YP_524365.1 89901894 3962521 complement(3465087..3465407) 1 NC_007908.1 hypothetical protein 3465407 3962521 Rfer_3125 Rhodoferax ferrireducens T118 hypothetical protein YP_524365.1 3465087 R 338969 CDS YP_524366.1 89901895 3962522 complement(3465462..3465728) 1 NC_007908.1 hypothetical protein 3465728 3962522 Rfer_3126 Rhodoferax ferrireducens T118 hypothetical protein YP_524366.1 3465462 R 338969 CDS YP_524367.1 89901896 3962523 complement(3465734..3466573) 1 NC_007908.1 IclR family transcriptional regulator 3466573 3962523 Rfer_3127 Rhodoferax ferrireducens T118 IclR family transcriptional regulator YP_524367.1 3465734 R 338969 CDS YP_524368.1 89901897 3962524 3466725..3467486 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 3467486 3962524 Rfer_3128 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_524368.1 3466725 D 338969 CDS YP_524369.1 89901898 3962525 3467524..3469038 1 NC_007908.1 ABC transporter-like protein 3469038 3962525 Rfer_3129 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524369.1 3467524 D 338969 CDS YP_524370.1 89901899 3962526 3469065..3470066 1 NC_007908.1 inner-membrane translocator 3470066 3962526 Rfer_3130 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524370.1 3469065 D 338969 CDS YP_524371.1 89901900 3962527 3470163..3471107 1 NC_007908.1 periplasmic-binding protein/LacI transcriptional regulator 3471107 3962527 Rfer_3131 Rhodoferax ferrireducens T118 periplasmic-binding protein/LacI transcriptional regulator YP_524371.1 3470163 D 338969 CDS YP_524372.1 89901901 3962528 3471174..3472304 1 NC_007908.1 porin 3472304 3962528 Rfer_3132 Rhodoferax ferrireducens T118 porin YP_524372.1 3471174 D 338969 CDS YP_524373.1 89901902 3962529 3472500..3473354 1 NC_007908.1 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 3473354 3962529 Rfer_3133 Rhodoferax ferrireducens T118 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_524373.1 3472500 D 338969 CDS YP_524374.1 89901903 3962530 3473356..3474639 1 NC_007908.1 mandelate racemase/muconate lactonizing protein 3474639 3962530 Rfer_3134 Rhodoferax ferrireducens T118 mandelate racemase/muconate lactonizing protein YP_524374.1 3473356 D 338969 CDS YP_524375.1 89901904 3962531 3474639..3475526 1 NC_007908.1 amidohydrolase 2 3475526 3962531 Rfer_3135 Rhodoferax ferrireducens T118 amidohydrolase 2 YP_524375.1 3474639 D 338969 CDS YP_524376.1 89901905 3962532 3475546..3476322 1 NC_007908.1 short chain dehydrogenase 3476322 3962532 Rfer_3136 Rhodoferax ferrireducens T118 short chain dehydrogenase YP_524376.1 3475546 D 338969 CDS YP_524377.1 89901906 3962533 3476351..3477949 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 3477949 3962533 Rfer_3137 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524377.1 3476351 D 338969 CDS YP_524378.1 89901907 3962534 3477998..3478339 1 NC_007908.1 hypothetical protein 3478339 3962534 Rfer_3138 Rhodoferax ferrireducens T118 hypothetical protein YP_524378.1 3477998 D 338969 CDS YP_524379.1 89901908 3962535 complement(3478426..3479724) 1 NC_007908.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II 3479724 3962535 Rfer_3139 Rhodoferax ferrireducens T118 3-oxoacyl-(acyl carrier protein) synthase II YP_524379.1 3478426 R 338969 CDS YP_524380.1 89901909 3962536 3479850..3480443 1 NC_007908.1 TetR family transcriptional regulator 3480443 3962536 Rfer_3140 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_524380.1 3479850 D 338969 CDS YP_524381.1 89901910 3962537 3480635..3481381 1 NC_007908.1 short chain dehydrogenase 3481381 3962537 Rfer_3141 Rhodoferax ferrireducens T118 short chain dehydrogenase YP_524381.1 3480635 D 338969 CDS YP_524382.1 89901911 3962538 3481453..3482034 1 NC_007908.1 hypothetical protein 3482034 3962538 Rfer_3142 Rhodoferax ferrireducens T118 hypothetical protein YP_524382.1 3481453 D 338969 CDS YP_524383.1 89901912 3962539 3482100..3482531 1 NC_007908.1 GCN5-like protein N-acetyltransferase 3482531 3962539 Rfer_3143 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_524383.1 3482100 D 338969 CDS YP_524384.1 89901913 3962540 complement(3482566..3483129) 1 NC_007908.1 sigma-24 (FecI-like protein) 3483129 3962540 Rfer_3144 Rhodoferax ferrireducens T118 sigma-24 (FecI-like protein) YP_524384.1 3482566 R 338969 CDS YP_524385.1 89901914 3962541 complement(3483195..3483695) 1 NC_007908.1 carboxymuconolactone decarboxylase 3483695 3962541 Rfer_3145 Rhodoferax ferrireducens T118 carboxymuconolactone decarboxylase YP_524385.1 3483195 R 338969 CDS YP_524386.1 89901915 3962542 3483797..3484279 1 NC_007908.1 cupin 2 protein 3484279 3962542 Rfer_3146 Rhodoferax ferrireducens T118 cupin 2 protein YP_524386.1 3483797 D 338969 CDS YP_524387.1 89901916 3962543 3484491..3485111 1 NC_007908.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3485111 gmk 3962543 gmk Rhodoferax ferrireducens T118 guanylate kinase YP_524387.1 3484491 D 338969 CDS YP_524388.1 89901917 3962544 3485141..3485344 1 NC_007908.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3485344 3962544 Rfer_3148 Rhodoferax ferrireducens T118 DNA-directed RNA polymerase subunit omega YP_524388.1 3485141 D 338969 CDS YP_524389.1 89901918 3962545 3485493..3487712 1 NC_007908.1 (p)ppGpp synthetase I SpoT/RelA 3487712 3962545 Rfer_3149 Rhodoferax ferrireducens T118 (p)ppGpp synthetase I SpoT/RelA YP_524389.1 3485493 D 338969 CDS YP_524390.1 89901919 3962546 complement(3487727..3488290) 1 NC_007908.1 GreA/GreB family elongation factor 3488290 3962546 Rfer_3150 Rhodoferax ferrireducens T118 GreA/GreB family elongation factor YP_524390.1 3487727 R 338969 CDS YP_524391.1 89901920 3962547 complement(3488338..3488919) 1 NC_007908.1 superoxide dismutase 3488919 3962547 Rfer_3151 Rhodoferax ferrireducens T118 superoxide dismutase YP_524391.1 3488338 R 338969 CDS YP_524392.1 89901921 3962548 complement(3488970..3490388) 1 NC_007908.1 exodeoxyribonuclease VII large subunit 3490388 3962548 Rfer_3152 Rhodoferax ferrireducens T118 exodeoxyribonuclease VII large subunit YP_524392.1 3488970 R 338969 CDS YP_524393.1 89901922 3962549 3490628..3491293 1 NC_007908.1 MotA/TolQ/ExbB proton channel 3491293 3962549 Rfer_3153 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_524393.1 3490628 D 338969 CDS YP_524394.1 89901923 3962550 3491290..3491718 1 NC_007908.1 biopolymer transport protein ExbD/TolR 3491718 3962550 Rfer_3154 Rhodoferax ferrireducens T118 biopolymer transport protein ExbD/TolR YP_524394.1 3491290 D 338969 CDS YP_524395.1 89901924 3962551 3492187..3493254 1 NC_007908.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 3493254 lpxK 3962551 lpxK Rhodoferax ferrireducens T118 tetraacyldisaccharide 4'-kinase YP_524395.1 3492187 D 338969 CDS YP_524396.1 89901925 3962552 3493235..3493417 1 NC_007908.1 hypothetical protein 3493417 3962552 Rfer_3156 Rhodoferax ferrireducens T118 hypothetical protein YP_524396.1 3493235 D 338969 CDS YP_524397.1 89901926 3962553 3493414..3494187 1 NC_007908.1 3-deoxy-D-manno-octulosonate cytidylyltransferase 3494187 3962553 Rfer_3157 Rhodoferax ferrireducens T118 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_524397.1 3493414 D 338969 CDS YP_524398.1 89901927 3962554 3494307..3494963 1 NC_007908.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 3494963 adk 3962554 adk Rhodoferax ferrireducens T118 adenylate kinase YP_524398.1 3494307 D 338969 CDS YP_524399.1 89901928 3962684 complement(3495100..3495906) 1 NC_007908.1 alpha/beta hydrolase 3495906 3962684 Rfer_3159 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_524399.1 3495100 R 338969 CDS YP_524400.1 89901929 3962685 complement(3495906..3497207) 1 NC_007908.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 3497207 3962685 Rfer_3160 Rhodoferax ferrireducens T118 O-acetylhomoserine aminocarboxypropyltransferase YP_524400.1 3495906 R 338969 CDS YP_524401.1 89901930 3962686 3497299..3498393 1 NC_007908.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3498393 3962686 Rfer_3161 Rhodoferax ferrireducens T118 chorismate synthase YP_524401.1 3497299 D 338969 CDS YP_524402.1 89901931 3962687 complement(3498449..3498757) 1 NC_007908.1 twin-arginine translocation pathway signal protein 3498757 3962687 Rfer_3162 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524402.1 3498449 R 338969 CDS YP_524403.1 89901932 3962688 complement(3499006..3500169) 1 NC_007908.1 basic membrane lipoprotein 3500169 3962688 Rfer_3163 Rhodoferax ferrireducens T118 basic membrane lipoprotein YP_524403.1 3499006 R 338969 CDS YP_524404.1 89901933 3962689 complement(3500232..3501155) 1 NC_007908.1 inner-membrane translocator 3501155 3962689 Rfer_3164 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524404.1 3500232 R 338969 CDS YP_524405.1 89901934 3962690 complement(3501152..3502207) 1 NC_007908.1 inner-membrane translocator 3502207 3962690 Rfer_3165 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524405.1 3501152 R 338969 CDS YP_524406.1 89901935 3962691 complement(3502200..3503726) 1 NC_007908.1 ABC transporter-like protein 3503726 3962691 Rfer_3166 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524406.1 3502200 R 338969 CDS YP_524407.1 89901936 3962692 complement(3503888..3504937) 1 NC_007908.1 hypothetical protein 3504937 3962692 Rfer_3167 Rhodoferax ferrireducens T118 hypothetical protein YP_524407.1 3503888 R 338969 CDS YP_524408.1 89901937 3962693 complement(3504973..3505596) 1 NC_007908.1 Crp/FNR family transcriptional regulator 3505596 3962693 Rfer_3168 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_524408.1 3504973 R 338969 CDS YP_524409.1 89901938 3962694 complement(3505840..3506556) 1 NC_007908.1 ABC transporter-like protein 3506556 3962694 Rfer_3169 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524409.1 3505840 R 338969 CDS YP_524410.1 89901939 3962695 complement(3506602..3507372) 1 NC_007908.1 ABC transporter-like protein 3507372 3962695 Rfer_3170 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524410.1 3506602 R 338969 CDS YP_524411.1 89901940 3962696 complement(3507369..3508460) 1 NC_007908.1 inner-membrane translocator 3508460 3962696 Rfer_3171 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524411.1 3507369 R 338969 CDS YP_524412.1 89901941 3962697 complement(3508476..3509405) 1 NC_007908.1 inner-membrane translocator 3509405 3962697 Rfer_3172 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524412.1 3508476 R 338969 CDS YP_524413.1 89901942 3962698 complement(3509725..3510387) 1 NC_007908.1 hypothetical protein 3510387 3962698 Rfer_3173 Rhodoferax ferrireducens T118 hypothetical protein YP_524413.1 3509725 R 338969 CDS YP_524414.1 89901943 3962699 complement(3510431..3511336) 1 NC_007908.1 MotA/TolQ/ExbB proton channel 3511336 3962699 Rfer_3174 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_524414.1 3510431 R 338969 CDS YP_524415.1 89901944 3962700 complement(3511388..3512878) 1 NC_007908.1 thermostable carboxypeptidase 1 3512878 3962700 Rfer_3175 Rhodoferax ferrireducens T118 thermostable carboxypeptidase 1 YP_524415.1 3511388 R 338969 CDS YP_524416.1 89901945 3962701 complement(3512906..3514213) 1 NC_007908.1 recombination factor protein RarA 3514213 3962701 Rfer_3176 Rhodoferax ferrireducens T118 recombination factor protein RarA YP_524416.1 3512906 R 338969 CDS YP_524417.1 89901946 3962702 complement(3514233..3514874) 1 NC_007908.1 outer membrane lipoprotein carrier protein LolA 3514874 3962702 Rfer_3177 Rhodoferax ferrireducens T118 outer membrane lipoprotein carrier protein LolA YP_524417.1 3514233 R 338969 CDS YP_524418.1 89901947 3962703 complement(3514933..3517287) 1 NC_007908.1 cell divisionFtsK/SpoIIIE 3517287 3962703 Rfer_3178 Rhodoferax ferrireducens T118 cell divisionFtsK/SpoIIIE YP_524418.1 3514933 R 338969 CDS YP_524419.1 89901948 3963049 3517340..3518290 1 NC_007908.1 thioredoxin reductase 3518290 3963049 Rfer_3179 Rhodoferax ferrireducens T118 thioredoxin reductase YP_524419.1 3517340 D 338969 CDS YP_524420.1 89901949 3963050 3518514..3518747 1 NC_007908.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3518747 rpmB 3963050 rpmB Rhodoferax ferrireducens T118 50S ribosomal protein L28 YP_524420.1 3518514 D 338969 CDS YP_524421.1 89901950 3963051 3518759..3518929 1 NC_007908.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3518929 rpmG 3963051 rpmG Rhodoferax ferrireducens T118 50S ribosomal protein L33 YP_524421.1 3518759 D 338969 CDS YP_524422.1 89901951 3963052 complement(3518993..3520207) 1 NC_007908.1 fatty acid desaturase 3520207 3963052 Rfer_3182 Rhodoferax ferrireducens T118 fatty acid desaturase YP_524422.1 3518993 R 338969 CDS YP_524423.1 89901952 3963053 complement(3520376..3521665) 1 NC_007908.1 Fmu (Sun) 3521665 3963053 Rfer_3183 Rhodoferax ferrireducens T118 Fmu (Sun) YP_524423.1 3520376 R 338969 CDS YP_524424.1 89901953 3963054 3521847..3523274 1 NC_007908.1 RND efflux system outer membrane lipoprotein NodT 3523274 3963054 Rfer_3184 Rhodoferax ferrireducens T118 RND efflux system outer membrane lipoprotein NodT YP_524424.1 3521847 D 338969 CDS YP_524425.1 89901954 3963055 3523348..3524688 1 NC_007908.1 secretion protein HlyD 3524688 3963055 Rfer_3185 Rhodoferax ferrireducens T118 secretion protein HlyD YP_524425.1 3523348 D 338969 CDS YP_524426.1 89901955 3963056 3524685..3525443 1 NC_007908.1 ABC transporter-like protein 3525443 3963056 Rfer_3186 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524426.1 3524685 D 338969 CDS YP_524427.1 89901956 3963057 3525443..3526645 1 NC_007908.1 hypothetical protein 3526645 3963057 Rfer_3187 Rhodoferax ferrireducens T118 hypothetical protein YP_524427.1 3525443 D 338969 CDS YP_524428.1 89901957 3963058 3527503..3528369 1 NC_007908.1 lipid A biosynthesis acyltransferase 3528369 3963058 Rfer_3188 Rhodoferax ferrireducens T118 lipid A biosynthesis acyltransferase YP_524428.1 3527503 D 338969 CDS YP_524429.1 89901958 3963059 complement(3528427..3529347) 1 NC_007908.1 alpha/beta hydrolase 3529347 3963059 Rfer_3189 Rhodoferax ferrireducens T118 alpha/beta hydrolase YP_524429.1 3528427 R 338969 CDS YP_524430.1 89901959 3963060 complement(3529458..3530081) 1 NC_007908.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 3530081 engB 3963060 engB Rhodoferax ferrireducens T118 ribosome biogenesis GTP-binding protein YsxC YP_524430.1 3529458 R 338969 CDS YP_524431.1 89901960 3963061 3530236..3530895 1 NC_007908.1 class I cytochrome c 3530895 3963061 Rfer_3191 Rhodoferax ferrireducens T118 class I cytochrome c YP_524431.1 3530236 D 338969 CDS YP_524432.1 89901961 3963062 3531147..3533357 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3533357 3963062 Rfer_3192 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_524432.1 3531147 D 338969 CDS YP_524433.1 89901962 3963063 complement(3533370..3533951) 1 NC_007908.1 hypothetical protein 3533951 3963063 Rfer_3193 Rhodoferax ferrireducens T118 hypothetical protein YP_524433.1 3533370 R 338969 CDS YP_524434.1 89901963 3963064 complement(3534421..3535407) 1 NC_007908.1 hypothetical protein 3535407 3963064 Rfer_3194 Rhodoferax ferrireducens T118 hypothetical protein YP_524434.1 3534421 R 338969 CDS YP_524435.1 89901964 3963065 complement(3535439..3536233) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 3536233 3963065 Rfer_3195 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_524435.1 3535439 R 338969 CDS YP_524436.1 89901965 3963066 complement(3536350..3537384) 1 NC_007908.1 ApbE-like protein lipoprotein 3537384 3963066 Rfer_3196 Rhodoferax ferrireducens T118 ApbE-like protein lipoprotein YP_524436.1 3536350 R 338969 CDS YP_524437.1 89901966 3963067 complement(3537404..3537790) 1 NC_007908.1 class I cytochrome c 3537790 3963067 Rfer_3197 Rhodoferax ferrireducens T118 class I cytochrome c YP_524437.1 3537404 R 338969 CDS YP_524438.1 89901967 3961174 3538171..3540864 1 NC_007908.1 FMN-binding 3540864 3961174 Rfer_3198 Rhodoferax ferrireducens T118 FMN-binding YP_524438.1 3538171 D 338969 CDS YP_524439.1 89901968 3961175 3540918..3542870 1 NC_007908.1 reduces nitrous oxide to nitrogen; nitrous-oxide reductase 3542870 3961175 Rfer_3199 Rhodoferax ferrireducens T118 nitrous-oxide reductase YP_524439.1 3540918 D 338969 CDS YP_524440.1 89901969 3961176 3542942..3544240 1 NC_007908.1 periplasmic copper-binding protein 3544240 3961176 Rfer_3200 Rhodoferax ferrireducens T118 periplasmic copper-binding protein YP_524440.1 3542942 D 338969 CDS YP_524441.1 89901970 3961177 3544221..3545132 1 NC_007908.1 ABC transporter-like protein 3545132 3961177 Rfer_3201 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524441.1 3544221 D 338969 CDS YP_524442.1 89901971 3961178 3545140..3545967 1 NC_007908.1 hypothetical protein 3545967 3961178 Rfer_3202 Rhodoferax ferrireducens T118 hypothetical protein YP_524442.1 3545140 D 338969 CDS YP_524443.1 89901972 3961179 3545964..3546509 1 NC_007908.1 NosL 3546509 3961179 Rfer_3203 Rhodoferax ferrireducens T118 NosL YP_524443.1 3545964 D 338969 CDS YP_524444.1 89901973 3961180 3546520..3546792 1 NC_007908.1 hypothetical protein 3546792 3961180 Rfer_3204 Rhodoferax ferrireducens T118 hypothetical protein YP_524444.1 3546520 D 338969 CDS YP_524445.1 89901974 3961181 3546792..3547151 1 NC_007908.1 hypothetical protein 3547151 3961181 Rfer_3205 Rhodoferax ferrireducens T118 hypothetical protein YP_524445.1 3546792 D 338969 CDS YP_524446.1 89901975 3961182 3547197..3547508 1 NC_007908.1 putative lipoprotein 3547508 3961182 Rfer_3206 Rhodoferax ferrireducens T118 putative lipoprotein YP_524446.1 3547197 D 338969 CDS YP_524447.1 89901976 3961183 3547551..3548219 1 NC_007908.1 hypothetical protein 3548219 3961183 Rfer_3207 Rhodoferax ferrireducens T118 hypothetical protein YP_524447.1 3547551 D 338969 CDS YP_524448.1 89901977 3961184 complement(3548554..3551397) 1 NC_007908.1 undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 3551397 3961184 Rfer_3208 Rhodoferax ferrireducens T118 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase YP_524448.1 3548554 R 338969 CDS YP_524449.1 89901978 3961185 complement(3551394..3556385) 1 NC_007908.1 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein 3556385 3961185 Rfer_3209 Rhodoferax ferrireducens T118 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein YP_524449.1 3551394 R 338969 CDS YP_524450.1 89901979 3961186 complement(3556818..3557747) 1 NC_007908.1 hypothetical protein 3557747 3961186 Rfer_3210 Rhodoferax ferrireducens T118 hypothetical protein YP_524450.1 3556818 R 338969 CDS YP_524451.1 89901980 3961187 complement(3557790..3559097) 1 NC_007908.1 hypothetical protein 3559097 3961187 Rfer_3211 Rhodoferax ferrireducens T118 hypothetical protein YP_524451.1 3557790 R 338969 CDS YP_524452.1 89901981 3961188 complement(3559122..3560636) 1 NC_007908.1 hypothetical protein 3560636 3961188 Rfer_3212 Rhodoferax ferrireducens T118 hypothetical protein YP_524452.1 3559122 R 338969 CDS YP_524453.1 89901982 3961189 complement(3560633..3561124) 1 NC_007908.1 hypothetical protein 3561124 3961189 Rfer_3213 Rhodoferax ferrireducens T118 hypothetical protein YP_524453.1 3560633 R 338969 CDS YP_524454.1 89901983 3961190 complement(3561192..3562979) 1 NC_007908.1 type II secretion system protein E 3562979 3961190 Rfer_3214 Rhodoferax ferrireducens T118 type II secretion system protein E YP_524454.1 3561192 R 338969 CDS YP_524455.1 89901984 3961191 complement(3562976..3563797) 1 NC_007908.1 hypothetical protein 3563797 3961191 Rfer_3215 Rhodoferax ferrireducens T118 hypothetical protein YP_524455.1 3562976 R 338969 CDS YP_524456.1 89901985 3961192 complement(3563804..3564346) 1 NC_007908.1 hypothetical protein 3564346 3961192 Rfer_3216 Rhodoferax ferrireducens T118 hypothetical protein YP_524456.1 3563804 R 338969 CDS YP_524457.1 89901986 3961193 complement(3564394..3565248) 1 NC_007908.1 hypothetical protein 3565248 3961193 Rfer_3217 Rhodoferax ferrireducens T118 hypothetical protein YP_524457.1 3564394 R 338969 CDS YP_524458.1 89901987 3962858 3565494..3566339 1 NC_007908.1 UBA/THIF-type NAD/FAD-binding protein 3566339 3962858 Rfer_3218 Rhodoferax ferrireducens T118 UBA/THIF-type NAD/FAD-binding protein YP_524458.1 3565494 D 338969 CDS YP_524459.1 89901988 3962859 3566557..3567450 1 NC_007908.1 hypothetical protein 3567450 3962859 Rfer_3219 Rhodoferax ferrireducens T118 hypothetical protein YP_524459.1 3566557 D 338969 CDS YP_524460.1 89901989 3962860 complement(3567583..3568308) 1 NC_007908.1 hypothetical protein 3568308 3962860 Rfer_3220 Rhodoferax ferrireducens T118 hypothetical protein YP_524460.1 3567583 R 338969 CDS YP_524461.1 89901990 3962861 complement(3568431..3569282) 1 NC_007908.1 TatD-like protein deoxyribonuclease 3569282 3962861 Rfer_3221 Rhodoferax ferrireducens T118 TatD-like protein deoxyribonuclease YP_524461.1 3568431 R 338969 CDS YP_524462.1 89901991 3962862 3569415..3570482 1 NC_007908.1 extracellular solute-binding protein 3570482 3962862 Rfer_3222 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_524462.1 3569415 D 338969 CDS YP_524463.1 89901992 3962863 3570495..3571649 1 NC_007908.1 ABC transporter-like protein 3571649 3962863 Rfer_3223 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524463.1 3570495 D 338969 CDS YP_524464.1 89901993 3962864 3571667..3572554 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3572554 3962864 Rfer_3224 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524464.1 3571667 D 338969 CDS YP_524465.1 89901994 3962865 3572551..3573423 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3573423 3962865 Rfer_3225 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524465.1 3572551 D 338969 CDS YP_524466.1 89901995 3962866 complement(3573326..3574351) 1 NC_007908.1 ornithine cyclodeaminase 3574351 3962866 Rfer_3226 Rhodoferax ferrireducens T118 ornithine cyclodeaminase YP_524466.1 3573326 R 338969 CDS YP_524467.1 89901996 3962867 complement(3574393..3574998) 1 NC_007908.1 transcriptional regulator 3574998 3962867 Rfer_3227 Rhodoferax ferrireducens T118 transcriptional regulator YP_524467.1 3574393 R 338969 CDS YP_524468.1 89901997 3962868 complement(3575045..3576559) 1 NC_007908.1 aldehyde dehydrogenase 3576559 3962868 Rfer_3228 Rhodoferax ferrireducens T118 aldehyde dehydrogenase YP_524468.1 3575045 R 338969 CDS YP_524469.1 89901998 3962869 3576658..3577833 1 NC_007908.1 FAD dependent oxidoreductase 3577833 3962869 Rfer_3229 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_524469.1 3576658 D 338969 CDS YP_524470.1 89901999 3962870 complement(3578039..3579241) 1 NC_007908.1 extracellular ligand-binding receptor 3579241 3962870 Rfer_3230 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_524470.1 3578039 R 338969 CDS YP_524471.1 89902000 3962871 complement(3579350..3580126) 1 NC_007908.1 lipoprotein releasing system ATP-binding protein 3580126 3962871 Rfer_3231 Rhodoferax ferrireducens T118 lipoprotein releasing system ATP-binding protein YP_524471.1 3579350 R 338969 CDS YP_524472.1 89902001 3962872 complement(3580128..3581384) 1 NC_007908.1 LolC/E family lipoprotein releasing system, transmembrane protein 3581384 3962872 Rfer_3232 Rhodoferax ferrireducens T118 LolC/E family lipoprotein releasing system, transmembrane protein YP_524472.1 3580128 R 338969 CDS YP_524473.1 89902002 3962873 3581459..3582406 1 NC_007908.1 hypothetical protein 3582406 3962873 Rfer_3233 Rhodoferax ferrireducens T118 hypothetical protein YP_524473.1 3581459 D 338969 CDS YP_524474.1 89902003 3962874 3582403..3584133 1 NC_007908.1 single-stranded-DNA-specific exonuclease RecJ 3584133 3962874 Rfer_3234 Rhodoferax ferrireducens T118 single-stranded-DNA-specific exonuclease RecJ YP_524474.1 3582403 D 338969 CDS YP_524475.1 89902004 3962875 complement(3584118..3586637) 1 NC_007908.1 AAA ATPase 3586637 3962875 Rfer_3235 Rhodoferax ferrireducens T118 AAA ATPase YP_524475.1 3584118 R 338969 CDS YP_524476.1 89902005 3962876 3586824..3587783 1 NC_007908.1 PHP-like protein 3587783 3962876 Rfer_3236 Rhodoferax ferrireducens T118 PHP-like protein YP_524476.1 3586824 D 338969 CDS YP_524477.1 89902006 3960583 3587791..3588693 1 NC_007908.1 hypothetical protein 3588693 3960583 Rfer_3237 Rhodoferax ferrireducens T118 hypothetical protein YP_524477.1 3587791 D 338969 CDS YP_524478.1 89902007 3960584 3588752..3589375 1 NC_007908.1 Sua5/YciO/YrdC/YwlC 3589375 3960584 Rfer_3238 Rhodoferax ferrireducens T118 Sua5/YciO/YrdC/YwlC YP_524478.1 3588752 D 338969 CDS YP_524479.1 89902008 3960585 3589408..3590076 1 NC_007908.1 peptidase M50 3590076 3960585 Rfer_3239 Rhodoferax ferrireducens T118 peptidase M50 YP_524479.1 3589408 D 338969 CDS YP_524480.1 89902009 3960586 3590119..3591417 1 NC_007908.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3591417 3960586 Rfer_3240 Rhodoferax ferrireducens T118 tryptophanyl-tRNA synthetase YP_524480.1 3590119 D 338969 CDS YP_524481.1 89902010 3960588 complement(3591633..3593351) 1 NC_007908.1 diguanylate cyclase 3593351 3960588 Rfer_3241 Rhodoferax ferrireducens T118 diguanylate cyclase YP_524481.1 3591633 R 338969 CDS YP_524482.1 89902011 3960589 complement(3593355..3594377) 1 NC_007908.1 extracellular solute-binding protein 3594377 3960589 Rfer_3242 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_524482.1 3593355 R 338969 CDS YP_524483.1 89902012 3960590 complement(3594384..3595742) 1 NC_007908.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 3595742 3960590 Rfer_3243 Rhodoferax ferrireducens T118 seryl-tRNA synthetase YP_524483.1 3594384 R 338969 CDS YP_524484.1 89902013 3960591 complement(3595786..3596430) 1 NC_007908.1 ABC transporter-like protein 3596430 3960591 Rfer_3244 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524484.1 3595786 R 338969 CDS YP_524485.1 89902014 3960592 complement(3596423..3598075) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 3598075 3960592 Rfer_3245 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524485.1 3596423 R 338969 CDS YP_524486.1 89902015 3960593 complement(3598087..3599109) 1 NC_007908.1 ABC transporter periplasmic-binding protein 3599109 3960593 Rfer_3246 Rhodoferax ferrireducens T118 ABC transporter periplasmic-binding protein YP_524486.1 3598087 R 338969 CDS YP_524487.1 89902016 3960595 complement(3599313..3599897) 1 NC_007908.1 transcriptional regulatory protein NadR 3599897 3960595 Rfer_3247 Rhodoferax ferrireducens T118 transcriptional regulatory protein NadR YP_524487.1 3599313 R 338969 CDS YP_524488.1 89902017 3960596 complement(3599943..3600905) 1 NC_007908.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3600905 ispH 3960596 ispH Rhodoferax ferrireducens T118 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_524488.1 3599943 R 338969 CDS YP_524489.1 89902018 3960597 complement(3600902..3601366) 1 NC_007908.1 FKBP-type peptidylprolyl isomerase 3601366 3960597 Rfer_3249 Rhodoferax ferrireducens T118 FKBP-type peptidylprolyl isomerase YP_524489.1 3600902 R 338969 CDS YP_524490.1 89902019 3960598 complement(3601767..3604877) 1 NC_007908.1 PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase 3604877 3960598 Rfer_3250 Rhodoferax ferrireducens T118 PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase YP_524490.1 3601767 R 338969 CDS YP_524491.1 89902020 3960599 complement(3604874..3605668) 1 NC_007908.1 hypothetical protein 3605668 3960599 Rfer_3251 Rhodoferax ferrireducens T118 hypothetical protein YP_524491.1 3604874 R 338969 CDS YP_524492.1 89902021 3960600 3605889..3606593 1 NC_007908.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3606593 radC 3960600 radC Rhodoferax ferrireducens T118 DNA repair protein RadC YP_524492.1 3605889 D 338969 CDS YP_524493.1 89902022 3960790 3606593..3607246 1 NC_007908.1 Smr protein/MutS2 3607246 3960790 Rfer_3253 Rhodoferax ferrireducens T118 Smr protein/MutS2 YP_524493.1 3606593 D 338969 CDS YP_524494.1 89902023 3960791 complement(3607261..3607665) 1 NC_007908.1 globin 3607665 3960791 Rfer_3254 Rhodoferax ferrireducens T118 globin YP_524494.1 3607261 R 338969 CDS YP_524495.1 89902024 3960792 complement(3607726..3610245) 1 NC_007908.1 hypothetical protein 3610245 3960792 Rfer_3255 Rhodoferax ferrireducens T118 hypothetical protein YP_524495.1 3607726 R 338969 CDS YP_524496.1 89902025 3960793 complement(3610355..3611197) 1 NC_007908.1 formate dehydrogenase subunit FdhD 3611197 3960793 Rfer_3256 Rhodoferax ferrireducens T118 formate dehydrogenase subunit FdhD YP_524496.1 3610355 R 338969 CDS YP_524497.1 89902026 3960794 complement(3611203..3611622) 1 NC_007908.1 hypothetical protein 3611622 3960794 Rfer_3257 Rhodoferax ferrireducens T118 hypothetical protein YP_524497.1 3611203 R 338969 CDS YP_524498.1 89902027 3960795 complement(3611624..3612814) 1 NC_007908.1 formate dehydrogenase subunit gamma 3612814 3960795 Rfer_3258 Rhodoferax ferrireducens T118 formate dehydrogenase subunit gamma YP_524498.1 3611624 R 338969 CDS YP_524499.1 89902028 3960796 complement(3612828..3613049) 1 NC_007908.1 putative lipoprotein 3613049 3960796 Rfer_3259 Rhodoferax ferrireducens T118 putative lipoprotein YP_524499.1 3612828 R 338969 CDS YP_524500.1 89902029 3960797 complement(3613046..3613678) 1 NC_007908.1 4Fe-4S ferredoxin 3613678 3960797 Rfer_3260 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_524500.1 3613046 R 338969 CDS YP_524501.1 89902030 3960798 complement(3613752..3616712) 1 NC_007908.1 twin-arginine translocation pathway signal protein 3616712 3960798 Rfer_3261 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524501.1 3613752 R 338969 CDS YP_524502.1 89902031 3960799 complement(3616777..3616983) 1 NC_007908.1 hypothetical protein 3616983 3960799 Rfer_3262 Rhodoferax ferrireducens T118 hypothetical protein YP_524502.1 3616777 R 338969 CDS YP_524503.1 89902032 3960800 complement(3617135..3617758) 1 NC_007908.1 cytoplasmic chaperone TorD 3617758 3960800 Rfer_3263 Rhodoferax ferrireducens T118 cytoplasmic chaperone TorD YP_524503.1 3617135 R 338969 CDS YP_524504.1 89902033 3960801 complement(3617761..3619854) 1 NC_007908.1 4Fe-4S ferredoxin 3619854 3960801 Rfer_3264 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_524504.1 3617761 R 338969 CDS YP_524505.1 89902034 3960802 complement(3619814..3620497) 1 NC_007908.1 hypothetical protein 3620497 3960802 Rfer_3265 Rhodoferax ferrireducens T118 hypothetical protein YP_524505.1 3619814 R 338969 CDS YP_524506.1 89902035 3960803 complement(3620490..3621047) 1 NC_007908.1 hypothetical protein 3621047 3960803 Rfer_3266 Rhodoferax ferrireducens T118 hypothetical protein YP_524506.1 3620490 R 338969 CDS YP_524507.1 89902036 3960804 complement(3621665..3622285) 1 NC_007908.1 glutathione S-transferase-like protein 3622285 3960804 Rfer_3267 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_524507.1 3621665 R 338969 CDS YP_524508.1 89902037 3960805 complement(3622436..3623707) 1 NC_007908.1 cyanophycinase-like protein 3623707 3960805 Rfer_3268 Rhodoferax ferrireducens T118 cyanophycinase-like protein YP_524508.1 3622436 R 338969 CDS YP_524509.1 89902038 3960806 complement(3623980..3626808) 1 NC_007908.1 formate dehydrogenase subunit alpha 3626808 3960806 Rfer_3269 Rhodoferax ferrireducens T118 formate dehydrogenase subunit alpha YP_524509.1 3623980 R 338969 CDS YP_524510.1 89902039 3960807 complement(3626809..3628584) 1 NC_007908.1 NADH dehydrogenase (quinone) 3628584 3960807 Rfer_3270 Rhodoferax ferrireducens T118 NADH dehydrogenase (quinone) YP_524510.1 3626809 R 338969 CDS YP_524511.1 89902040 3960808 complement(3628689..3631229) 1 NC_007908.1 hypothetical protein 3631229 3960808 Rfer_3271 Rhodoferax ferrireducens T118 hypothetical protein YP_524511.1 3628689 R 338969 CDS YP_524512.1 89902041 3962419 complement(3631322..3632413) 1 NC_007908.1 putative iron sulfur-binding protein 3632413 3962419 Rfer_3272 Rhodoferax ferrireducens T118 putative iron sulfur-binding protein YP_524512.1 3631322 R 338969 CDS YP_524513.1 89902042 3962420 3632526..3633809 1 NC_007908.1 patatin 3633809 3962420 Rfer_3273 Rhodoferax ferrireducens T118 patatin YP_524513.1 3632526 D 338969 CDS YP_524514.1 89902043 3962421 3633996..3634205 1 NC_007908.1 CsbD-like protein 3634205 3962421 Rfer_3274 Rhodoferax ferrireducens T118 CsbD-like protein YP_524514.1 3633996 D 338969 CDS YP_524515.1 89902044 3962422 3634355..3636457 1 NC_007908.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3636457 metG 3962422 metG Rhodoferax ferrireducens T118 methionyl-tRNA synthetase YP_524515.1 3634355 D 338969 CDS YP_524516.1 89902045 3962423 3636687..3638702 1 NC_007908.1 NADH dehydrogenase (quinone) 3638702 3962423 Rfer_3276 Rhodoferax ferrireducens T118 NADH dehydrogenase (quinone) YP_524516.1 3636687 D 338969 CDS YP_524517.1 89902046 3962424 3638699..3639625 1 NC_007908.1 NAD-dependent dehydrogenase subunit 3639625 3962424 Rfer_3277 Rhodoferax ferrireducens T118 NAD-dependent dehydrogenase subunit YP_524517.1 3638699 D 338969 CDS YP_524518.1 89902047 3962425 3639622..3640230 1 NC_007908.1 hypothetical protein 3640230 3962425 Rfer_3278 Rhodoferax ferrireducens T118 hypothetical protein YP_524518.1 3639622 D 338969 CDS YP_524519.1 89902048 3962426 3640227..3641669 1 NC_007908.1 NADH/ubiquinone/plastoquinone (complex I) 3641669 3962426 Rfer_3279 Rhodoferax ferrireducens T118 NADH/ubiquinone/plastoquinone (complex I) YP_524519.1 3640227 D 338969 CDS YP_524520.1 89902049 3962427 3641672..3643168 1 NC_007908.1 NADH-ubiquinone oxidoreductase subunit 49kDa 3643168 3962427 Rfer_3280 Rhodoferax ferrireducens T118 NADH-ubiquinone oxidoreductase subunit 49kDa YP_524520.1 3641672 D 338969 CDS YP_524521.1 89902050 3962428 3643177..3643941 1 NC_007908.1 NADH ubiquinone oxidoreductase, 20 kDa subunit 3643941 3962428 Rfer_3281 Rhodoferax ferrireducens T118 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_524521.1 3643177 D 338969 CDS YP_524522.1 89902051 3962429 complement(3643984..3644592) 1 NC_007908.1 LuxR family transcriptional regulator 3644592 3962429 Rfer_3282 Rhodoferax ferrireducens T118 LuxR family transcriptional regulator YP_524522.1 3643984 R 338969 CDS YP_524523.1 89902052 3962430 3644671..3645837 1 NC_007908.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3645837 3962430 Rfer_3283 Rhodoferax ferrireducens T118 acetyl-CoA acetyltransferase YP_524523.1 3644671 D 338969 CDS YP_524524.1 89902053 3962431 3645834..3647366 1 NC_007908.1 AMP-dependent synthetase and ligase 3647366 3962431 Rfer_3284 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_524524.1 3645834 D 338969 CDS YP_524525.1 89902054 3962432 3647360..3648142 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 3648142 3962432 Rfer_3285 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_524525.1 3647360 D 338969 CDS YP_524526.1 89902055 3962433 3648191..3649690 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 3649690 3962433 Rfer_3286 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524526.1 3648191 D 338969 CDS YP_524527.1 89902056 3962434 complement(3649759..3650274) 1 NC_007908.1 NADH ubiquinone oxidoreductase, 20 kDa subunit 3650274 3962434 Rfer_3287 Rhodoferax ferrireducens T118 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_524527.1 3649759 R 338969 CDS YP_524528.1 89902057 3962435 complement(3650271..3651830) 1 NC_007908.1 NADH-ubiquinone oxidoreductase subunit 49kDa 3651830 3962435 Rfer_3288 Rhodoferax ferrireducens T118 NADH-ubiquinone oxidoreductase subunit 49kDa YP_524528.1 3650271 R 338969 CDS YP_524529.1 89902058 3962436 complement(3651835..3653289) 1 NC_007908.1 hydrogenase 4 subunit F 3653289 3962436 Rfer_3289 Rhodoferax ferrireducens T118 hydrogenase 4 subunit F YP_524529.1 3651835 R 338969 CDS YP_524530.1 89902059 3962437 complement(3653292..3653951) 1 NC_007908.1 hydrogenase 4 membrane component 3653951 3962437 Rfer_3290 Rhodoferax ferrireducens T118 hydrogenase 4 membrane component YP_524530.1 3653292 R 338969 CDS YP_524531.1 89902060 3962438 complement(3653948..3654898) 1 NC_007908.1 respiratory-chain NADH dehydrogenase subunit 1 3654898 3962438 Rfer_3291 Rhodoferax ferrireducens T118 respiratory-chain NADH dehydrogenase subunit 1 YP_524531.1 3653948 R 338969 CDS YP_524532.1 89902061 3962877 complement(3654895..3656919) 1 NC_007908.1 hydrogenase 4 subunit B 3656919 3962877 Rfer_3292 Rhodoferax ferrireducens T118 hydrogenase 4 subunit B YP_524532.1 3654895 R 338969 CDS YP_524533.1 89902062 3962878 complement(3657022..3657591) 1 NC_007908.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 3657591 dcd 3962878 dcd Rhodoferax ferrireducens T118 deoxycytidine triphosphate deaminase YP_524533.1 3657022 R 338969 CDS YP_524534.1 89902063 3962879 3657739..3658137 1 NC_007908.1 hypothetical protein 3658137 3962879 Rfer_3294 Rhodoferax ferrireducens T118 hypothetical protein YP_524534.1 3657739 D 338969 CDS YP_524535.1 89902064 3962880 complement(3658254..3659591) 1 NC_007908.1 Catalyzes the deamination of guanine; guanine deaminase 3659591 3962880 Rfer_3295 Rhodoferax ferrireducens T118 guanine deaminase YP_524535.1 3658254 R 338969 CDS YP_524536.1 89902065 3962881 complement(3659602..3660693) 1 NC_007908.1 basic membrane lipoprotein 3660693 3962881 Rfer_3296 Rhodoferax ferrireducens T118 basic membrane lipoprotein YP_524536.1 3659602 R 338969 CDS YP_524537.1 89902066 3962882 complement(3660803..3661840) 1 NC_007908.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 3661840 3962882 Rfer_3297 Rhodoferax ferrireducens T118 adenosine deaminase YP_524537.1 3660803 R 338969 CDS YP_524538.1 89902067 3962883 complement(3661846..3662763) 1 NC_007908.1 NAD-dependent epimerase/dehydratase 3662763 3962883 Rfer_3298 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_524538.1 3661846 R 338969 CDS YP_524539.1 89902068 3962884 3662948..3664030 1 NC_007908.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 3664030 3962884 Rfer_3299 Rhodoferax ferrireducens T118 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_524539.1 3662948 D 338969 CDS YP_524540.1 89902069 3962885 3664051..3665022 1 NC_007908.1 hypothetical protein 3665022 3962885 Rfer_3300 Rhodoferax ferrireducens T118 hypothetical protein YP_524540.1 3664051 D 338969 CDS YP_524541.1 89902070 3962886 complement(3665002..3666120) 1 NC_007908.1 4Fe-4S cluster-binding 3666120 3962886 Rfer_3301 Rhodoferax ferrireducens T118 4Fe-4S cluster-binding YP_524541.1 3665002 R 338969 CDS YP_524542.1 89902071 3962887 3666100..3666651 1 NC_007908.1 hypothetical protein 3666651 3962887 Rfer_3302 Rhodoferax ferrireducens T118 hypothetical protein YP_524542.1 3666100 D 338969 CDS YP_524543.1 89902072 3962888 3666648..3668072 1 NC_007908.1 N-acetylmuramoyl-L-alanine amidase 3668072 3962888 Rfer_3303 Rhodoferax ferrireducens T118 N-acetylmuramoyl-L-alanine amidase YP_524543.1 3666648 D 338969 CDS YP_524544.1 89902073 3962889 3668204..3668752 1 NC_007908.1 hypothetical protein 3668752 3962889 Rfer_3304 Rhodoferax ferrireducens T118 hypothetical protein YP_524544.1 3668204 D 338969 CDS YP_524545.1 89902074 3962890 complement(3668789..3669436) 1 NC_007908.1 DedA protein (DSG-1 protein) 3669436 3962890 Rfer_3305 Rhodoferax ferrireducens T118 DedA protein (DSG-1 protein) YP_524545.1 3668789 R 338969 CDS YP_524546.1 89902075 3962891 complement(3669641..3670462) 1 NC_007908.1 iron permease FTR1 3670462 3962891 Rfer_3306 Rhodoferax ferrireducens T118 iron permease FTR1 YP_524546.1 3669641 R 338969 CDS YP_524547.1 89902076 3962892 complement(3670483..3670812) 1 NC_007908.1 hypothetical protein 3670812 3962892 Rfer_3307 Rhodoferax ferrireducens T118 hypothetical protein YP_524547.1 3670483 R 338969 CDS YP_524548.1 89902077 3962893 3670957..3672951 1 NC_007908.1 DNA mismatch repair protein MutL 3672951 3962893 Rfer_3308 Rhodoferax ferrireducens T118 DNA mismatch repair protein MutL YP_524548.1 3670957 D 338969 CDS YP_524549.1 89902078 3962894 3673002..3674441 1 NC_007908.1 MATE efflux family protein 3674441 3962894 Rfer_3309 Rhodoferax ferrireducens T118 MATE efflux family protein YP_524549.1 3673002 D 338969 CDS YP_524550.1 89902079 3962895 complement(3674448..3674948) 1 NC_007908.1 hypothetical protein 3674948 3962895 Rfer_3310 Rhodoferax ferrireducens T118 hypothetical protein YP_524550.1 3674448 R 338969 CDS YP_524551.1 89902080 3962952 complement(3675202..3676407) 1 NC_007908.1 FAD-binding monooxygenase 3676407 3962952 Rfer_3311 Rhodoferax ferrireducens T118 FAD-binding monooxygenase YP_524551.1 3675202 R 338969 CDS YP_524552.1 89902081 3962953 complement(3676420..3677202) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 3677202 3962953 Rfer_3312 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_524552.1 3676420 R 338969 CDS YP_524553.1 89902082 3962954 3677356..3678246 1 NC_007908.1 twin-arginine translocation pathway signal protein 3678246 3962954 Rfer_3313 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524553.1 3677356 D 338969 CDS YP_524554.1 89902083 3962955 complement(3678275..3680122) 1 NC_007908.1 anthranilate synthase component I/chorismate-binding protein 3680122 3962955 Rfer_3314 Rhodoferax ferrireducens T118 anthranilate synthase component I/chorismate-binding protein YP_524554.1 3678275 R 338969 CDS YP_524555.1 89902084 3962956 complement(3680291..3682711) 1 NC_007908.1 putative ATP-dependent protease La 3682711 3962956 Rfer_3315 Rhodoferax ferrireducens T118 putative ATP-dependent protease La YP_524555.1 3680291 R 338969 CDS YP_524556.1 89902085 3962957 3682835..3683842 1 NC_007908.1 luciferase-like protein 3683842 3962957 Rfer_3316 Rhodoferax ferrireducens T118 luciferase-like protein YP_524556.1 3682835 D 338969 CDS YP_524557.1 89902086 3962958 3683839..3684117 1 NC_007908.1 putative lipase 3684117 3962958 Rfer_3317 Rhodoferax ferrireducens T118 putative lipase YP_524557.1 3683839 D 338969 CDS YP_524558.1 89902087 3962959 complement(3684208..3684690) 1 NC_007908.1 hypothetical protein 3684690 3962959 Rfer_3318 Rhodoferax ferrireducens T118 hypothetical protein YP_524558.1 3684208 R 338969 CDS YP_524559.1 89902088 3962960 complement(3684691..3685323) 1 NC_007908.1 hypothetical protein 3685323 3962960 Rfer_3319 Rhodoferax ferrireducens T118 hypothetical protein YP_524559.1 3684691 R 338969 CDS YP_524560.1 89902089 3962961 complement(3685429..3685866) 1 NC_007908.1 hypothetical protein 3685866 3962961 Rfer_3320 Rhodoferax ferrireducens T118 hypothetical protein YP_524560.1 3685429 R 338969 CDS YP_524561.1 89902090 3962962 complement(3685863..3686429) 1 NC_007908.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 3686429 3962962 Rfer_3321 Rhodoferax ferrireducens T118 RNA polymerase factor sigma-70 YP_524561.1 3685863 R 338969 CDS YP_524562.1 89902091 3962963 3686721..3688544 1 NC_007908.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 3688544 3962963 Rfer_3322 Rhodoferax ferrireducens T118 acetolactate synthase 3 catalytic subunit YP_524562.1 3686721 D 338969 CDS YP_524563.1 89902092 3962964 3688634..3689125 1 NC_007908.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 3689125 ilvH 3962964 ilvH Rhodoferax ferrireducens T118 acetolactate synthase 3 regulatory subunit YP_524563.1 3688634 D 338969 CDS YP_524564.1 89902093 3962965 3689147..3690163 1 NC_007908.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 3690163 3962965 Rfer_3324 Rhodoferax ferrireducens T118 ketol-acid reductoisomerase YP_524564.1 3689147 D 338969 CDS YP_524565.1 89902094 3962966 3690234..3691046 1 NC_007908.1 CDP-diacylglycerol--serine O-phosphatidyltransferase 3691046 3962966 Rfer_3325 Rhodoferax ferrireducens T118 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_524565.1 3690234 D 338969 CDS YP_524566.1 89902095 3962967 3691148..3691867 1 NC_007908.1 Crp/FNR family transcriptional regulator 3691867 3962967 Rfer_3326 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_524566.1 3691148 D 338969 CDS YP_524567.1 89902096 3962968 3691888..3692973 1 NC_007908.1 aminoglycoside phosphotransferase 3692973 3962968 Rfer_3327 Rhodoferax ferrireducens T118 aminoglycoside phosphotransferase YP_524567.1 3691888 D 338969 CDS YP_524568.1 89902097 3962969 3693033..3694283 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 3694283 3962969 Rfer_3328 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_524568.1 3693033 D 338969 CDS YP_524569.1 89902098 3962970 complement(3694404..3695603) 1 NC_007908.1 metal dependent phosphohydrolase 3695603 3962970 Rfer_3329 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_524569.1 3694404 R 338969 CDS YP_524570.1 89902099 3962971 complement(3695679..3696851) 1 NC_007908.1 hypothetical protein 3696851 3962971 Rfer_3330 Rhodoferax ferrireducens T118 hypothetical protein YP_524570.1 3695679 R 338969 CDS YP_524571.1 89902100 3963030 complement(3696866..3697798) 1 NC_007908.1 general secretion pathway protein, ATPase 3697798 3963030 Rfer_3331 Rhodoferax ferrireducens T118 general secretion pathway protein, ATPase YP_524571.1 3696866 R 338969 CDS YP_524572.1 89902101 3963031 complement(3697798..3699642) 1 NC_007908.1 type II and III secretion system protein 3699642 3963031 Rfer_3332 Rhodoferax ferrireducens T118 type II and III secretion system protein YP_524572.1 3697798 R 338969 CDS YP_524573.1 89902102 3963032 complement(3699654..3700178) 1 NC_007908.1 hypothetical protein 3700178 3963032 Rfer_3333 Rhodoferax ferrireducens T118 hypothetical protein YP_524573.1 3699654 R 338969 CDS YP_524574.1 89902103 3963033 complement(3700175..3700828) 1 NC_007908.1 hypothetical protein 3700828 3963033 Rfer_3334 Rhodoferax ferrireducens T118 hypothetical protein YP_524574.1 3700175 R 338969 CDS YP_524575.1 89902104 3963034 complement(3700825..3701514) 1 NC_007908.1 fimbrial assembly 3701514 3963034 Rfer_3335 Rhodoferax ferrireducens T118 fimbrial assembly YP_524575.1 3700825 R 338969 CDS YP_524576.1 89902105 3963035 complement(3701583..3702680) 1 NC_007908.1 hypothetical protein 3702680 3963035 Rfer_3336 Rhodoferax ferrireducens T118 hypothetical protein YP_524576.1 3701583 R 338969 CDS YP_524577.1 89902106 3963036 complement(3702839..3706447) 1 NC_007908.1 hypothetical protein 3706447 3963036 Rfer_3337 Rhodoferax ferrireducens T118 hypothetical protein YP_524577.1 3702839 R 338969 CDS YP_524578.1 89902107 3963037 complement(3706628..3707047) 1 NC_007908.1 hypothetical protein 3707047 3963037 Rfer_3338 Rhodoferax ferrireducens T118 hypothetical protein YP_524578.1 3706628 R 338969 CDS YP_524579.1 89902108 3963038 complement(3707044..3707895) 1 NC_007908.1 methylation 3707895 3963038 Rfer_3339 Rhodoferax ferrireducens T118 methylation YP_524579.1 3707044 R 338969 CDS YP_524580.1 89902109 3963039 complement(3707892..3708383) 1 NC_007908.1 hypothetical protein 3708383 3963039 Rfer_3340 Rhodoferax ferrireducens T118 hypothetical protein YP_524580.1 3707892 R 338969 CDS YP_524581.1 89902110 3963040 complement(3708376..3708924) 1 NC_007908.1 methylation 3708924 3963040 Rfer_3341 Rhodoferax ferrireducens T118 methylation YP_524581.1 3708376 R 338969 CDS YP_524582.1 89902111 3963041 complement(3709136..3710500) 1 NC_007908.1 signal recognition particle protein 3710500 3963041 Rfer_3342 Rhodoferax ferrireducens T118 signal recognition particle protein YP_524582.1 3709136 R 338969 CDS YP_524583.1 89902112 3963042 3710578..3711381 1 NC_007908.1 cytochrome c assembly protein 3711381 3963042 Rfer_3343 Rhodoferax ferrireducens T118 cytochrome c assembly protein YP_524583.1 3710578 D 338969 CDS YP_524584.1 89902113 3963043 3711606..3713360 1 NC_007908.1 multi-sensor signal transduction histidine kinase 3713360 3963043 Rfer_3344 Rhodoferax ferrireducens T118 multi-sensor signal transduction histidine kinase YP_524584.1 3711606 D 338969 CDS YP_524585.1 89902114 3963044 3713339..3714790 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 3714790 3963044 Rfer_3345 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_524585.1 3713339 D 338969 CDS YP_524586.1 89902115 3963045 3714777..3715388 1 NC_007908.1 N-acetyl-anhydromuranmyl-L-alanine amidase 3715388 3963045 Rfer_3346 Rhodoferax ferrireducens T118 N-acetyl-anhydromuranmyl-L-alanine amidase YP_524586.1 3714777 D 338969 CDS YP_524587.1 89902116 3963046 3715565..3718510 1 NC_007908.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3718510 3963046 Rfer_3347 Rhodoferax ferrireducens T118 ribonucleotide-diphosphate reductase subunit alpha YP_524587.1 3715565 D 338969 CDS YP_524588.1 89902117 3963047 3718649..3719851 1 NC_007908.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3719851 3963047 Rfer_3348 Rhodoferax ferrireducens T118 ribonucleotide-diphosphate reductase subunit beta YP_524588.1 3718649 D 338969 CDS YP_524589.1 89902118 3963048 3720016..3720639 1 NC_007908.1 histone protein 3720639 3963048 Rfer_3349 Rhodoferax ferrireducens T118 histone protein YP_524589.1 3720016 D 338969 CDS YP_524590.1 89902119 3964213 complement(3720722..3721663) 1 NC_007908.1 Zinc finger/thioredoxin putative 3721663 3964213 Rfer_3350 Rhodoferax ferrireducens T118 Zinc finger/thioredoxin putative YP_524590.1 3720722 R 338969 CDS YP_524591.1 89902120 3964214 complement(3721698..3722603) 1 NC_007908.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3722603 prmA 3964214 prmA Rhodoferax ferrireducens T118 50S ribosomal protein L11 methyltransferase YP_524591.1 3721698 R 338969 CDS YP_524592.1 89902121 3964215 complement(3722736..3724085) 1 NC_007908.1 acetyl-CoA carboxylase, biotin carboxylase 3724085 3964215 Rfer_3352 Rhodoferax ferrireducens T118 acetyl-CoA carboxylase, biotin carboxylase YP_524592.1 3722736 R 338969 CDS YP_524593.1 89902122 3964216 complement(3724104..3724547) 1 NC_007908.1 acetyl-CoA carboxylase, biotin carboxyl carrier protein 3724547 3964216 Rfer_3353 Rhodoferax ferrireducens T118 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_524593.1 3724104 R 338969 CDS YP_524594.1 89902123 3964217 complement(3724717..3725283) 1 NC_007908.1 putative thioredoxin-like protein transmembrane protein 3725283 3964217 Rfer_3354 Rhodoferax ferrireducens T118 putative thioredoxin-like protein transmembrane protein YP_524594.1 3724717 R 338969 CDS YP_524595.1 89902124 3964218 complement(3725276..3725872) 1 NC_007908.1 hypothetical protein 3725872 3964218 Rfer_3355 Rhodoferax ferrireducens T118 hypothetical protein YP_524595.1 3725276 R 338969 CDS YP_524596.1 89902125 3964219 3725928..3727328 1 NC_007908.1 UDP-N-acetylmuramate 3727328 3964219 Rfer_3356 Rhodoferax ferrireducens T118 UDP-N-acetylmuramate YP_524596.1 3725928 D 338969 CDS YP_524597.1 89902126 3964220 complement(3727411..3728379) 1 NC_007908.1 acts as a molecular chaperone to fold and export lipase A; lipase chaperone 3728379 3964220 Rfer_3357 Rhodoferax ferrireducens T118 lipase chaperone YP_524597.1 3727411 R 338969 CDS YP_524598.1 89902127 3964221 complement(3728387..3729304) 1 NC_007908.1 triacylglycerol lipase 3729304 3964221 Rfer_3358 Rhodoferax ferrireducens T118 triacylglycerol lipase YP_524598.1 3728387 R 338969 CDS YP_524599.1 89902128 3964222 3729720..3730352 1 NC_007908.1 hypothetical protein 3730352 3964222 Rfer_3359 Rhodoferax ferrireducens T118 hypothetical protein YP_524599.1 3729720 D 338969 CDS YP_524600.1 89902129 3964223 3730463..3732220 1 NC_007908.1 type II secretion system protein E 3732220 3964223 Rfer_3360 Rhodoferax ferrireducens T118 type II secretion system protein E YP_524600.1 3730463 D 338969 CDS YP_524601.1 89902130 3964224 3732227..3733465 1 NC_007908.1 type II secretion system protein 3733465 3964224 Rfer_3361 Rhodoferax ferrireducens T118 type II secretion system protein YP_524601.1 3732227 D 338969 CDS YP_524602.1 89902131 3964225 3733468..3733968 1 NC_007908.1 hypothetical protein 3733968 3964225 Rfer_3362 Rhodoferax ferrireducens T118 hypothetical protein YP_524602.1 3733468 D 338969 CDS YP_524603.1 89902132 3964226 3734305..3734724 1 NC_007908.1 methylation 3734724 3964226 Rfer_3363 Rhodoferax ferrireducens T118 methylation YP_524603.1 3734305 D 338969 CDS YP_524604.1 89902133 3964227 complement(3735014..3735628) 1 NC_007908.1 hypothetical protein 3735628 3964227 Rfer_3364 Rhodoferax ferrireducens T118 hypothetical protein YP_524604.1 3735014 R 338969 CDS YP_524605.1 89902134 3964228 complement(3735773..3737131) 1 NC_007908.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3737131 3964228 Rfer_3365 Rhodoferax ferrireducens T118 (dimethylallyl)adenosine tRNA methylthiotransferase YP_524605.1 3735773 R 338969 CDS YP_524606.1 89902135 3964229 complement(3737266..3737670) 1 NC_007908.1 hypothetical protein 3737670 3964229 Rfer_3366 Rhodoferax ferrireducens T118 hypothetical protein YP_524606.1 3737266 R 338969 CDS YP_524607.1 89902136 3964230 complement(3737822..3738961) 1 NC_007908.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3738961 3964230 Rfer_3367 Rhodoferax ferrireducens T118 phospho-2-dehydro-3-deoxyheptonate aldolase YP_524607.1 3737822 R 338969 CDS YP_524608.1 89902137 3964231 complement(3739155..3740699) 1 NC_007908.1 hypothetical protein 3740699 3964231 Rfer_3368 Rhodoferax ferrireducens T118 hypothetical protein YP_524608.1 3739155 R 338969 CDS YP_524609.1 89902138 3964232 complement(3740696..3742168) 1 NC_007908.1 peptidase U62, modulator of DNA gyrase 3742168 3964232 Rfer_3369 Rhodoferax ferrireducens T118 peptidase U62, modulator of DNA gyrase YP_524609.1 3740696 R 338969 CDS YP_524610.1 89902139 3960942 3742233..3744815 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3744815 3960942 Rfer_3370 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_524610.1 3742233 D 338969 CDS YP_524611.1 89902140 3960943 complement(3744844..3745998) 1 NC_007908.1 rod shape-determining protein RodA 3745998 3960943 Rfer_3371 Rhodoferax ferrireducens T118 rod shape-determining protein RodA YP_524611.1 3744844 R 338969 CDS YP_524612.1 89902141 3960944 complement(3746021..3747877) 1 NC_007908.1 putative signal transduction histidine kinase 3747877 3960944 Rfer_3372 Rhodoferax ferrireducens T118 putative signal transduction histidine kinase YP_524612.1 3746021 R 338969 CDS YP_524613.1 89902142 3960945 complement(3747928..3748716) 1 NC_007908.1 two component LuxR family transcriptional regulator 3748716 3960945 Rfer_3373 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_524613.1 3747928 R 338969 CDS YP_524614.1 89902143 3960946 3748842..3751205 1 NC_007908.1 hypothetical protein 3751205 3960946 Rfer_3374 Rhodoferax ferrireducens T118 hypothetical protein YP_524614.1 3748842 D 338969 CDS YP_524615.1 89902144 3960947 3751354..3751956 1 NC_007908.1 hypothetical protein 3751956 3960947 Rfer_3375 Rhodoferax ferrireducens T118 hypothetical protein YP_524615.1 3751354 D 338969 CDS YP_524616.1 89902145 3960948 complement(3751991..3752821) 1 NC_007908.1 urease accessory protein UreD 3752821 3960948 Rfer_3376 Rhodoferax ferrireducens T118 urease accessory protein UreD YP_524616.1 3751991 R 338969 CDS YP_524617.1 89902146 3960949 complement(3752852..3753550) 1 NC_007908.1 ABC transporter-like protein 3753550 3960949 Rfer_3377 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524617.1 3752852 R 338969 CDS YP_524618.1 89902147 3960950 complement(3753547..3754422) 1 NC_007908.1 ABC transporter-like protein 3754422 3960950 Rfer_3378 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524618.1 3753547 R 338969 CDS YP_524619.1 89902148 3960951 complement(3754419..3755522) 1 NC_007908.1 inner-membrane translocator 3755522 3960951 Rfer_3379 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524619.1 3754419 R 338969 CDS YP_524620.1 89902149 3960952 complement(3755527..3757107) 1 NC_007908.1 inner-membrane translocator 3757107 3960952 Rfer_3380 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524620.1 3755527 R 338969 CDS YP_524621.1 89902150 3960953 complement(3757213..3758472) 1 NC_007908.1 twin-arginine translocation pathway signal protein 3758472 3960953 Rfer_3381 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524621.1 3757213 R 338969 CDS YP_524622.1 89902151 3960954 3758917..3760179 1 NC_007908.1 hypothetical protein 3760179 3960954 Rfer_3382 Rhodoferax ferrireducens T118 hypothetical protein YP_524622.1 3758917 D 338969 CDS YP_524623.1 89902152 3960955 complement(3760487..3761008) 1 NC_007908.1 ABC transporter-like protein 3761008 3960955 Rfer_3383 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524623.1 3760487 R 338969 CDS YP_524624.1 89902153 3960956 complement(3761367..3762053) 1 NC_007908.1 hypothetical protein 3762053 3960956 Rfer_3384 Rhodoferax ferrireducens T118 hypothetical protein YP_524624.1 3761367 R 338969 CDS YP_524625.1 89902154 3960957 complement(3762050..3762559) 1 NC_007908.1 XRE family transcriptional regulator 3762559 3960957 Rfer_3385 Rhodoferax ferrireducens T118 XRE family transcriptional regulator YP_524625.1 3762050 R 338969 CDS YP_524626.1 89902155 3960958 3762955..3764694 1 NC_007908.1 gamma-glutamyltransferase 3764694 3960958 Rfer_3386 Rhodoferax ferrireducens T118 gamma-glutamyltransferase YP_524626.1 3762955 D 338969 CDS YP_524627.1 89902156 3960959 complement(3764761..3765402) 1 NC_007908.1 negative transcriptional regulator 3765402 3960959 Rfer_3387 Rhodoferax ferrireducens T118 negative transcriptional regulator YP_524627.1 3764761 R 338969 CDS YP_524628.1 89902157 3960960 complement(3765399..3765887) 1 NC_007908.1 OsmC-like protein 3765887 3960960 Rfer_3388 Rhodoferax ferrireducens T118 OsmC-like protein YP_524628.1 3765399 R 338969 CDS YP_524629.1 89902158 3962173 complement(3766015..3766584) 1 NC_007908.1 alkylhydroperoxidase 3766584 3962173 Rfer_3389 Rhodoferax ferrireducens T118 alkylhydroperoxidase YP_524629.1 3766015 R 338969 CDS YP_524630.1 89902159 3962174 complement(3766690..3767529) 1 NC_007908.1 AraC family transcriptional regulator 3767529 3962174 Rfer_3390 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_524630.1 3766690 R 338969 CDS YP_524631.1 89902160 3962175 3767944..3771849 1 NC_007908.1 putative PAS/PAC sensor protein 3771849 3962175 Rfer_3391 Rhodoferax ferrireducens T118 putative PAS/PAC sensor protein YP_524631.1 3767944 D 338969 CDS YP_524632.1 89902161 3962176 3772399..3772668 1 NC_007908.1 hypothetical protein 3772668 3962176 Rfer_3392 Rhodoferax ferrireducens T118 hypothetical protein YP_524632.1 3772399 D 338969 CDS YP_524633.1 89902162 3962177 3772704..3773801 1 NC_007908.1 hypothetical protein 3773801 3962177 Rfer_3393 Rhodoferax ferrireducens T118 hypothetical protein YP_524633.1 3772704 D 338969 CDS YP_524634.1 89902163 3962178 complement(3773809..3774621) 1 NC_007908.1 hypothetical protein 3774621 3962178 Rfer_3394 Rhodoferax ferrireducens T118 hypothetical protein YP_524634.1 3773809 R 338969 CDS YP_524635.1 89902164 3962179 complement(3774743..3778252) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3778252 3962179 Rfer_3395 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_524635.1 3774743 R 338969 CDS YP_524636.1 89902165 3962180 complement(3778264..3780909) 1 NC_007908.1 TonB-dependent receptor 3780909 3962180 Rfer_3396 Rhodoferax ferrireducens T118 TonB-dependent receptor YP_524636.1 3778264 R 338969 CDS YP_524637.1 89902166 3962181 complement(3781276..3782262) 1 NC_007908.1 two component LuxR family transcriptional regulator 3782262 3962181 Rfer_3397 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_524637.1 3781276 R 338969 CDS YP_524638.1 89902167 3962182 complement(3782252..3785860) 1 NC_007908.1 periplasmic sensor hybrid histidine kinase 3785860 3962182 Rfer_3398 Rhodoferax ferrireducens T118 periplasmic sensor hybrid histidine kinase YP_524638.1 3782252 R 338969 CDS YP_524639.1 89902168 3962183 3785958..3786260 1 NC_007908.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 3786260 ureA 3962183 ureA Rhodoferax ferrireducens T118 urease subunit gamma YP_524639.1 3785958 D 338969 CDS YP_524640.1 89902169 3962184 3786277..3786582 1 NC_007908.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 3786582 ureB 3962184 ureB Rhodoferax ferrireducens T118 urease subunit beta YP_524640.1 3786277 D 338969 CDS YP_524641.1 89902170 3962185 3786595..3787263 1 NC_007908.1 lysine exporter protein LysE/YggA 3787263 3962185 Rfer_3401 Rhodoferax ferrireducens T118 lysine exporter protein LysE/YggA YP_524641.1 3786595 D 338969 CDS YP_524642.1 89902171 3962186 3787288..3789033 1 NC_007908.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3789033 ureC 3962186 ureC Rhodoferax ferrireducens T118 urease subunit alpha YP_524642.1 3787288 D 338969 CDS YP_524643.1 89902172 3962187 3789039..3789497 1 NC_007908.1 GCN5-like protein N-acetyltransferase 3789497 3962187 Rfer_3403 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_524643.1 3789039 D 338969 CDS YP_524644.1 89902173 3962188 complement(3789501..3789899) 1 NC_007908.1 death-on-curing protein 3789899 3962188 Rfer_3404 Rhodoferax ferrireducens T118 death-on-curing protein YP_524644.1 3789501 R 338969 CDS YP_524645.1 89902174 3962189 complement(3789896..3790120) 1 NC_007908.1 transcriptional regulator/antitoxin MazE 3790120 3962189 Rfer_3405 Rhodoferax ferrireducens T118 transcriptional regulator/antitoxin MazE YP_524645.1 3789896 R 338969 CDS YP_524646.1 89902175 3962190 3790195..3790719 1 NC_007908.1 UreE urease accessory-like protein 3790719 3962190 Rfer_3406 Rhodoferax ferrireducens T118 UreE urease accessory-like protein YP_524646.1 3790195 D 338969 CDS YP_524647.1 89902176 3962191 3790723..3791400 1 NC_007908.1 urease accessory protein UreF 3791400 3962191 Rfer_3407 Rhodoferax ferrireducens T118 urease accessory protein UreF YP_524647.1 3790723 D 338969 CDS YP_524648.1 89902177 3962192 3791451..3792140 1 NC_007908.1 urease accessory protein UreG 3792140 3962192 Rfer_3408 Rhodoferax ferrireducens T118 urease accessory protein UreG YP_524648.1 3791451 D 338969 CDS YP_524649.1 89902178 3963335 complement(3793348..3794175) 1 NC_007908.1 peptidase T2, asparaginase 2 3794175 3963335 Rfer_3409 Rhodoferax ferrireducens T118 peptidase T2, asparaginase 2 YP_524649.1 3793348 R 338969 CDS YP_524650.1 89902179 3963336 complement(3794172..3794660) 1 NC_007908.1 protein tyrosine phosphatase 3794660 3963336 Rfer_3410 Rhodoferax ferrireducens T118 protein tyrosine phosphatase YP_524650.1 3794172 R 338969 CDS YP_524651.1 89902180 3963337 3794794..3796881 1 NC_007908.1 ribonuclease II 3796881 3963337 Rfer_3411 Rhodoferax ferrireducens T118 ribonuclease II YP_524651.1 3794794 D 338969 CDS YP_524652.1 89902181 3963338 3796878..3797735 1 NC_007908.1 TonB-like protein 3797735 3963338 Rfer_3412 Rhodoferax ferrireducens T118 TonB-like protein YP_524652.1 3796878 D 338969 CDS YP_524653.2 229220855 3963339 3797775..3798611 1 NC_007908.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3798611 aroE 3963339 aroE Rhodoferax ferrireducens T118 shikimate 5-dehydrogenase YP_524653.2 3797775 D 338969 CDS YP_524654.1 89902183 3963340 3798640..3799563 1 NC_007908.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3799563 lpxC 3963340 lpxC Rhodoferax ferrireducens T118 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_524654.1 3798640 D 338969 CDS YP_524655.1 89902184 3963341 3799578..3799754 1 NC_007908.1 hypothetical protein 3799754 3963341 Rfer_3415 Rhodoferax ferrireducens T118 hypothetical protein YP_524655.1 3799578 D 338969 CDS YP_524656.1 89902185 3963342 complement(3799808..3800557) 1 NC_007908.1 methyltransferase 3800557 3963342 Rfer_3416 Rhodoferax ferrireducens T118 methyltransferase YP_524656.1 3799808 R 338969 CDS YP_524657.1 89902186 3963343 complement(3800714..3801262) 1 NC_007908.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3801262 ruvC 3963343 ruvC Rhodoferax ferrireducens T118 Holliday junction resolvase YP_524657.1 3800714 R 338969 CDS YP_524658.1 89902187 3963344 complement(3801526..3803361) 1 NC_007908.1 hypothetical protein 3803361 3963344 Rfer_3418 Rhodoferax ferrireducens T118 hypothetical protein YP_524658.1 3801526 R 338969 CDS YP_524659.1 89902188 3963345 complement(3803628..3804410) 1 NC_007908.1 monofunctional biosynthetic peptidoglycan transglycosylase 3804410 3963345 Rfer_3419 Rhodoferax ferrireducens T118 monofunctional biosynthetic peptidoglycan transglycosylase YP_524659.1 3803628 R 338969 CDS YP_524660.1 89902189 3963346 complement(3804489..3805742) 1 NC_007908.1 cell division protein FtsZ 3805742 3963346 Rfer_3420 Rhodoferax ferrireducens T118 cell division protein FtsZ YP_524660.1 3804489 R 338969 CDS YP_524661.1 89902190 3963347 complement(3805890..3807119) 1 NC_007908.1 cell division protein FtsA 3807119 3963347 Rfer_3421 Rhodoferax ferrireducens T118 cell division protein FtsA YP_524661.1 3805890 R 338969 CDS YP_524662.1 89902191 3963348 complement(3807146..3807931) 1 NC_007908.1 cell division protein FtsQ 3807931 3963348 Rfer_3422 Rhodoferax ferrireducens T118 cell division protein FtsQ YP_524662.1 3807146 R 338969 CDS YP_524663.1 89902192 3963349 complement(3807928..3808968) 1 NC_007908.1 D-alanine--D-alanine ligase 3808968 3963349 Rfer_3423 Rhodoferax ferrireducens T118 D-alanine--D-alanine ligase YP_524663.1 3807928 R 338969 CDS YP_524664.1 89902193 3963350 complement(3808965..3810398) 1 NC_007908.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3810398 murC 3963350 murC Rhodoferax ferrireducens T118 UDP-N-acetylmuramate--L-alanine ligase YP_524664.1 3808965 R 338969 CDS YP_524665.1 89902194 3963351 complement(3811039..3812205) 1 NC_007908.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 3812205 murG 3963351 murG Rhodoferax ferrireducens T118 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_524665.1 3811039 R 338969 CDS YP_524666.1 89902195 3963352 complement(3812202..3813437) 1 NC_007908.1 cell cycle protein 3813437 3963352 Rfer_3426 Rhodoferax ferrireducens T118 cell cycle protein YP_524666.1 3812202 R 338969 CDS YP_524667.1 89902196 3963353 complement(3813434..3814954) 1 NC_007908.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3814954 murD 3963353 murD Rhodoferax ferrireducens T118 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_524667.1 3813434 R 338969 CDS YP_524668.1 89902197 3960488 complement(3814957..3816135) 1 NC_007908.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 3816135 mraY 3960488 mraY Rhodoferax ferrireducens T118 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_524668.1 3814957 R 338969 CDS YP_524669.1 89902198 3960489 complement(3816125..3817567) 1 NC_007908.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 3817567 3960489 Rfer_3429 Rhodoferax ferrireducens T118 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_524669.1 3816125 R 338969 CDS YP_524670.1 89902199 3960490 complement(3818229..3819845) 1 NC_007908.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 3819845 murE 3960490 murE Rhodoferax ferrireducens T118 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_524670.1 3818229 R 338969 CDS YP_524671.1 89902200 3960491 complement(3819845..3821587) 1 NC_007908.1 peptidoglycan glycosyltransferase 3821587 3960491 Rfer_3431 Rhodoferax ferrireducens T118 peptidoglycan glycosyltransferase YP_524671.1 3819845 R 338969 CDS YP_524672.1 89902201 3960492 complement(3821584..3821928) 1 NC_007908.1 FtsL-like protein cell division protein 3821928 3960492 Rfer_3432 Rhodoferax ferrireducens T118 FtsL-like protein cell division protein YP_524672.1 3821584 R 338969 CDS YP_524673.1 89902202 3960493 complement(3821925..3822854) 1 NC_007908.1 S-adenosyl-methyltransferase MraW 3822854 mraW 3960493 mraW Rhodoferax ferrireducens T118 S-adenosyl-methyltransferase MraW YP_524673.1 3821925 R 338969 CDS YP_524674.1 89902203 3960494 complement(3822876..3823367) 1 NC_007908.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 3823367 3960494 Rfer_3434 Rhodoferax ferrireducens T118 cell division protein MraZ YP_524674.1 3822876 R 338969 CDS YP_524675.1 89902204 3960495 complement(3823597..3824919) 1 NC_007908.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 3824919 hslU 3960495 hslU Rhodoferax ferrireducens T118 ATP-dependent protease ATP-binding subunit HslU YP_524675.1 3823597 R 338969 CDS YP_524676.1 89902205 3960496 complement(3824916..3825464) 1 NC_007908.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 3825464 3960496 Rfer_3436 Rhodoferax ferrireducens T118 ATP-dependent protease peptidase subunit YP_524676.1 3824916 R 338969 CDS YP_524677.1 89902206 3960497 complement(3825483..3827291) 1 NC_007908.1 hypothetical protein 3827291 3960497 Rfer_3437 Rhodoferax ferrireducens T118 hypothetical protein YP_524677.1 3825483 R 338969 CDS YP_524678.1 89902207 3960498 complement(3827332..3828621) 1 NC_007908.1 TraR/DksA family transcriptional regulator 3828621 3960498 Rfer_3438 Rhodoferax ferrireducens T118 TraR/DksA family transcriptional regulator YP_524678.1 3827332 R 338969 CDS YP_524679.1 89902208 3960499 complement(3828653..3829708) 1 NC_007908.1 cobalamin synthesis protein, P47K 3829708 3960499 Rfer_3439 Rhodoferax ferrireducens T118 cobalamin synthesis protein, P47K YP_524679.1 3828653 R 338969 CDS YP_524680.1 89902209 3960500 complement(3829773..3830954) 1 NC_007908.1 SAM-dependent methyltransferase 3830954 3960500 Rfer_3440 Rhodoferax ferrireducens T118 SAM-dependent methyltransferase YP_524680.1 3829773 R 338969 CDS YP_524681.1 89902210 3960501 complement(3831038..3831346) 1 NC_007908.1 hypothetical protein 3831346 3960501 Rfer_3441 Rhodoferax ferrireducens T118 hypothetical protein YP_524681.1 3831038 R 338969 CDS YP_524682.1 89902211 3960502 complement(3831381..3832394) 1 NC_007908.1 phage integrase 3832394 3960502 Rfer_3442 Rhodoferax ferrireducens T118 phage integrase YP_524682.1 3831381 R 338969 CDS YP_524683.1 89902212 3960503 complement(3832969..3833655) 1 NC_007908.1 hypothetical protein 3833655 3960503 Rfer_3443 Rhodoferax ferrireducens T118 hypothetical protein YP_524683.1 3832969 R 338969 CDS YP_524684.1 89902213 3960504 complement(3833652..3834527) 1 NC_007908.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3834527 dapF 3960504 dapF Rhodoferax ferrireducens T118 diaminopimelate epimerase YP_524684.1 3833652 R 338969 CDS YP_524685.1 89902214 3960505 complement(3834539..3834853) 1 NC_007908.1 hypothetical protein 3834853 3960505 Rfer_3445 Rhodoferax ferrireducens T118 hypothetical protein YP_524685.1 3834539 R 338969 CDS YP_524686.1 89902215 3960506 3834954..3836642 1 NC_007908.1 beta-lactamase-like protein 3836642 3960506 Rfer_3446 Rhodoferax ferrireducens T118 beta-lactamase-like protein YP_524686.1 3834954 D 338969 CDS YP_524687.1 89902216 3960507 3836635..3836907 1 NC_007908.1 hypothetical protein 3836907 3960507 Rfer_3447 Rhodoferax ferrireducens T118 hypothetical protein YP_524687.1 3836635 D 338969 CDS YP_524688.1 89902217 3962556 complement(3837155..3839053) 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 3839053 3962556 Rfer_3449 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524688.1 3837155 R 338969 CDS YP_524689.1 89902218 3962557 3839198..3839548 1 NC_007908.1 hypothetical protein 3839548 3962557 Rfer_3450 Rhodoferax ferrireducens T118 hypothetical protein YP_524689.1 3839198 D 338969 CDS YP_524690.1 89902219 3962559 complement(3840374..3841558) 1 NC_007908.1 hypothetical protein 3841558 3962559 Rfer_3452 Rhodoferax ferrireducens T118 hypothetical protein YP_524690.1 3840374 R 338969 CDS YP_524691.1 89902220 3962560 complement(3841984..3843321) 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 3843321 3962560 Rfer_3453 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_524691.1 3841984 R 338969 CDS YP_524692.1 89902221 3962561 complement(3843318..3845189) 1 NC_007908.1 histidine kinase 3845189 3962561 Rfer_3454 Rhodoferax ferrireducens T118 histidine kinase YP_524692.1 3843318 R 338969 CDS YP_524693.1 89902222 3962562 complement(3845269..3846570) 1 NC_007908.1 sodium:dicarboxylate symporter 3846570 3962562 Rfer_3455 Rhodoferax ferrireducens T118 sodium:dicarboxylate symporter YP_524693.1 3845269 R 338969 CDS YP_524694.1 89902223 3962563 3847537..3848355 1 NC_007908.1 hypothetical protein 3848355 3962563 Rfer_3456 Rhodoferax ferrireducens T118 hypothetical protein YP_524694.1 3847537 D 338969 CDS YP_524695.1 89902224 3962564 3848383..3849171 1 NC_007908.1 RNA-binding S4 3849171 3962564 Rfer_3457 Rhodoferax ferrireducens T118 RNA-binding S4 YP_524695.1 3848383 D 338969 CDS YP_524696.1 89902225 3962565 complement(3849168..3850067) 1 NC_007908.1 LysR family transcriptional regulator 3850067 3962565 Rfer_3458 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_524696.1 3849168 R 338969 CDS YP_524697.1 89902226 3962566 3850251..3850799 1 NC_007908.1 BadM/Rrf2 family transcriptional regulator 3850799 3962566 Rfer_3459 Rhodoferax ferrireducens T118 BadM/Rrf2 family transcriptional regulator YP_524697.1 3850251 D 338969 CDS YP_524698.1 89902227 3962568 3851321..3852238 1 NC_007908.1 cysteine synthases 3852238 3962568 Rfer_3460 Rhodoferax ferrireducens T118 cysteine synthases YP_524698.1 3851321 D 338969 CDS YP_524699.1 89902228 3962569 3852280..3854052 1 NC_007908.1 FAD dependent oxidoreductase 3854052 3962569 Rfer_3461 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_524699.1 3852280 D 338969 CDS YP_524700.1 89902229 3962570 complement(3854170..3854799) 1 NC_007908.1 lysine exporter protein LysE/YggA 3854799 3962570 Rfer_3462 Rhodoferax ferrireducens T118 lysine exporter protein LysE/YggA YP_524700.1 3854170 R 338969 CDS YP_524701.1 89902230 3962571 complement(3854826..3855701) 1 NC_007908.1 putative metalloprotease; heat shock protein HtpX 3855701 3962571 Rfer_3463 Rhodoferax ferrireducens T118 heat shock protein HtpX YP_524701.1 3854826 R 338969 CDS YP_524702.1 89902231 3962572 complement(3855903..3856946) 1 NC_007908.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3856946 3962572 Rfer_3464 Rhodoferax ferrireducens T118 dihydroorotase YP_524702.1 3855903 R 338969 CDS YP_524703.1 89902232 3962645 complement(3856983..3857981) 1 NC_007908.1 LysR family transcriptional regulator 3857981 3962645 Rfer_3465 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_524703.1 3856983 R 338969 CDS YP_524704.1 89902233 3962646 complement(3858111..3858512) 1 NC_007908.1 hypothetical protein 3858512 3962646 Rfer_3466 Rhodoferax ferrireducens T118 hypothetical protein YP_524704.1 3858111 R 338969 CDS YP_524705.1 89902234 3962647 3858606..3859577 1 NC_007908.1 AraC family transcriptional regulator 3859577 3962647 Rfer_3467 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_524705.1 3858606 D 338969 CDS YP_524706.1 89902235 3962648 3859640..3860029 1 NC_007908.1 hypothetical protein 3860029 3962648 Rfer_3468 Rhodoferax ferrireducens T118 hypothetical protein YP_524706.1 3859640 D 338969 CDS YP_524707.1 89902236 3962649 complement(3860084..3861112) 1 NC_007908.1 aldo/keto reductase 3861112 3962649 Rfer_3469 Rhodoferax ferrireducens T118 aldo/keto reductase YP_524707.1 3860084 R 338969 CDS YP_524708.1 89902237 3962650 3861356..3861601 1 NC_007908.1 hypothetical protein 3861601 3962650 Rfer_3470 Rhodoferax ferrireducens T118 hypothetical protein YP_524708.1 3861356 D 338969 CDS YP_524709.1 89902238 3962651 3861582..3863438 1 NC_007908.1 diguanylate cyclase 3863438 3962651 Rfer_3471 Rhodoferax ferrireducens T118 diguanylate cyclase YP_524709.1 3861582 D 338969 CDS YP_524710.1 89902239 3962652 complement(3863500..3864105) 1 NC_007908.1 hypothetical protein 3864105 3962652 Rfer_3472 Rhodoferax ferrireducens T118 hypothetical protein YP_524710.1 3863500 R 338969 CDS YP_524711.1 89902240 3962653 complement(3864186..3864839) 1 NC_007908.1 regulator of competence-specific genes 3864839 3962653 Rfer_3473 Rhodoferax ferrireducens T118 regulator of competence-specific genes YP_524711.1 3864186 R 338969 CDS YP_524712.1 89902241 3962654 3865169..3865918 1 NC_007908.1 hypothetical protein 3865918 3962654 Rfer_3474 Rhodoferax ferrireducens T118 hypothetical protein YP_524712.1 3865169 D 338969 CDS YP_524713.1 89902242 3962655 3866249..3867964 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 3867964 3962655 Rfer_3475 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_524713.1 3866249 D 338969 CDS YP_524714.1 89902243 3962656 complement(3868058..3868312) 1 NC_007908.1 17 kDa surface antigen 3868312 3962656 Rfer_3476 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_524714.1 3868058 R 338969 CDS YP_524715.1 89902244 3962657 3868908..3869720 1 NC_007908.1 5'-3' exonuclease 3869720 3962657 Rfer_3477 Rhodoferax ferrireducens T118 5'-3' exonuclease YP_524715.1 3868908 D 338969 CDS YP_524716.1 89902245 3962658 complement(3870026..3870328) 1 NC_007908.1 hypothetical protein 3870328 3962658 Rfer_3478 Rhodoferax ferrireducens T118 hypothetical protein YP_524716.1 3870026 R 338969 CDS YP_524717.1 89902246 3962659 complement(3870934..3871854) 1 NC_007908.1 LysR family transcriptional regulator 3871854 3962659 Rfer_3479 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_524717.1 3870934 R 338969 CDS YP_524718.1 89902247 3962661 3872509..3873540 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctP 3873540 3962661 Rfer_3481 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctP YP_524718.1 3872509 D 338969 CDS YP_524719.1 89902248 3962662 3873628..3874287 1 NC_007908.1 tripartite ATP-independent periplasmic transporter DctQ 3874287 3962662 Rfer_3482 Rhodoferax ferrireducens T118 tripartite ATP-independent periplasmic transporter DctQ YP_524719.1 3873628 D 338969 CDS YP_524720.1 89902249 3962663 3874290..3875573 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 3875573 3962663 Rfer_3483 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_524720.1 3874290 D 338969 CDS YP_524721.1 89902250 3962664 3875639..3876484 1 NC_007908.1 hypothetical protein 3876484 3962664 Rfer_3484 Rhodoferax ferrireducens T118 hypothetical protein YP_524721.1 3875639 D 338969 CDS YP_524722.1 89902251 3963204 3876494..3877675 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 3877675 3963204 Rfer_3485 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_524722.1 3876494 D 338969 CDS YP_524723.1 89902252 3963205 3877681..3878520 1 NC_007908.1 HpcH/HpaI aldolase 3878520 3963205 Rfer_3486 Rhodoferax ferrireducens T118 HpcH/HpaI aldolase YP_524723.1 3877681 D 338969 CDS YP_524724.1 89902253 3963206 3878546..3879898 1 NC_007908.1 fumarate lyase 3879898 3963206 Rfer_3487 Rhodoferax ferrireducens T118 fumarate lyase YP_524724.1 3878546 D 338969 CDS YP_524725.1 89902254 3963207 3879905..3881365 1 NC_007908.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 3881365 3963207 Rfer_3488 Rhodoferax ferrireducens T118 tricarballylate dehydrogenase YP_524725.1 3879905 D 338969 CDS YP_524726.1 89902255 3963208 3881358..3882524 1 NC_007908.1 citrate utilization protein B 3882524 3963208 Rfer_3489 Rhodoferax ferrireducens T118 citrate utilization protein B YP_524726.1 3881358 D 338969 CDS YP_524727.1 89902256 3963209 3882549..3882737 1 NC_007908.1 hypothetical protein 3882737 3963209 Rfer_3490 Rhodoferax ferrireducens T118 hypothetical protein YP_524727.1 3882549 D 338969 CDS YP_524728.1 89902257 3963210 complement(3882818..3883795) 1 NC_007908.1 LysR family transcriptional regulator 3883795 3963210 Rfer_3491 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_524728.1 3882818 R 338969 CDS YP_524729.1 89902258 3963211 3883836..3884843 1 NC_007908.1 NAD-dependent epimerase/dehydratase 3884843 3963211 Rfer_3492 Rhodoferax ferrireducens T118 NAD-dependent epimerase/dehydratase YP_524729.1 3883836 D 338969 CDS YP_524730.1 89902259 3963212 complement(3885018..3886844) 1 NC_007908.1 ABC transporter-like protein 3886844 3963212 Rfer_3493 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524730.1 3885018 R 338969 CDS YP_524731.1 89902260 3963213 3886940..3887380 1 NC_007908.1 thioesterase superfamily protein 3887380 3963213 Rfer_3494 Rhodoferax ferrireducens T118 thioesterase superfamily protein YP_524731.1 3886940 D 338969 CDS YP_524732.1 89902261 3963214 3887588..3888139 1 NC_007908.1 NADPH-dependent FMN reductase 3888139 3963214 Rfer_3495 Rhodoferax ferrireducens T118 NADPH-dependent FMN reductase YP_524732.1 3887588 D 338969 CDS YP_524733.1 89902262 3963215 3888168..3889115 1 NC_007908.1 hypothetical protein 3889115 3963215 Rfer_3496 Rhodoferax ferrireducens T118 hypothetical protein YP_524733.1 3888168 D 338969 CDS YP_524734.1 89902263 3963217 complement(3889364..3890179) 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3890179 3963217 Rfer_3498 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_524734.1 3889364 R 338969 CDS YP_524735.1 89902264 3963218 3890314..3891189 1 NC_007908.1 inner-membrane translocator 3891189 3963218 Rfer_3499 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524735.1 3890314 D 338969 CDS YP_524736.1 89902265 3963219 3891186..3892262 1 NC_007908.1 inner-membrane translocator 3892262 3963219 Rfer_3500 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524736.1 3891186 D 338969 CDS YP_524737.1 89902266 3963220 3892259..3893107 1 NC_007908.1 ABC transporter-like protein 3893107 3963220 Rfer_3501 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524737.1 3892259 D 338969 CDS YP_524738.1 89902267 3963221 3893104..3893901 1 NC_007908.1 ABC transporter-like protein 3893901 3963221 Rfer_3502 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524738.1 3893104 D 338969 CDS YP_524739.1 89902268 3963222 3893906..3895762 1 NC_007908.1 AMP-dependent synthetase and ligase 3895762 3963222 Rfer_3503 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_524739.1 3893906 D 338969 CDS YP_524740.1 89902269 3963354 3895881..3897059 1 NC_007908.1 extracellular ligand-binding receptor 3897059 3963354 Rfer_3504 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_524740.1 3895881 D 338969 CDS YP_524741.1 89902270 3963355 complement(3897121..3897609) 1 NC_007908.1 hypothetical protein 3897609 3963355 Rfer_3505 Rhodoferax ferrireducens T118 hypothetical protein YP_524741.1 3897121 R 338969 CDS YP_524742.1 89902271 3963356 complement(3897620..3898786) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 3898786 3963356 Rfer_3506 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_524742.1 3897620 R 338969 CDS YP_524743.1 89902272 3963357 complement(3898836..3899720) 1 NC_007908.1 short-chain dehydrogenase/reductase SDR 3899720 3963357 Rfer_3507 Rhodoferax ferrireducens T118 short-chain dehydrogenase/reductase SDR YP_524743.1 3898836 R 338969 CDS YP_524744.1 89902273 3963358 complement(3899720..3900403) 1 NC_007908.1 TetR family transcriptional regulator 3900403 3963358 Rfer_3508 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_524744.1 3899720 R 338969 CDS YP_524745.1 89902274 3963359 complement(3900537..3902270) 1 NC_007908.1 thiamine pyrophosphate enzyme-like protein 3902270 3963359 Rfer_3509 Rhodoferax ferrireducens T118 thiamine pyrophosphate enzyme-like protein YP_524745.1 3900537 R 338969 CDS YP_524746.1 89902275 3963360 complement(3902312..3903937) 1 NC_007908.1 fumarate reductase/succinate dehydrogenase flavoprotein-like protein 3903937 3963360 Rfer_3510 Rhodoferax ferrireducens T118 fumarate reductase/succinate dehydrogenase flavoprotein-like protein YP_524746.1 3902312 R 338969 CDS YP_524747.1 89902276 3963361 3904155..3904856 1 NC_007908.1 Crp/FNR family transcriptional regulator 3904856 3963361 Rfer_3511 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_524747.1 3904155 D 338969 CDS YP_524748.1 89902277 3963362 complement(3904985..3905749) 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3905749 3963362 Rfer_3512 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_524748.1 3904985 R 338969 CDS YP_524749.1 89902278 3963363 complement(3905814..3906665) 1 NC_007908.1 hypothetical protein 3906665 3963363 Rfer_3513 Rhodoferax ferrireducens T118 hypothetical protein YP_524749.1 3905814 R 338969 CDS YP_524750.1 89902279 3963364 complement(3907083..3908273) 1 NC_007908.1 BNR repeat-containing protein 3908273 3963364 Rfer_3514 Rhodoferax ferrireducens T118 BNR repeat-containing protein YP_524750.1 3907083 R 338969 CDS YP_524751.1 89902280 3963365 3909210..3910073 1 NC_007908.1 UbiE/COQ5 methyltransferase 3910073 3963365 Rfer_3515 Rhodoferax ferrireducens T118 UbiE/COQ5 methyltransferase YP_524751.1 3909210 D 338969 CDS YP_524752.1 89902281 3963366 complement(3910308..3911504) 1 NC_007908.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3911504 3963366 Rfer_3516 Rhodoferax ferrireducens T118 acetyl-CoA acetyltransferase YP_524752.1 3910308 R 338969 CDS YP_524753.1 89902282 3963367 complement(3911525..3913924) 1 NC_007908.1 3-hydroxyacyl-CoA dehydrogenase 3913924 3963367 Rfer_3517 Rhodoferax ferrireducens T118 3-hydroxyacyl-CoA dehydrogenase YP_524753.1 3911525 R 338969 CDS YP_524754.1 89902283 3963368 complement(3914016..3914450) 1 NC_007908.1 hypothetical protein 3914450 3963368 Rfer_3518 Rhodoferax ferrireducens T118 hypothetical protein YP_524754.1 3914016 R 338969 CDS YP_524755.1 89902284 3963369 complement(3914467..3916263) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 3916263 3963369 Rfer_3519 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_524755.1 3914467 R 338969 CDS YP_524756.1 89902285 3963370 complement(3916266..3916976) 1 NC_007908.1 TetR family transcriptional regulator 3916976 3963370 Rfer_3520 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_524756.1 3916266 R 338969 CDS YP_524757.2 162289251 3963371 complement(3917153..3917875) 1 NC_007908.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3917875 slmA 3963371 slmA Rhodoferax ferrireducens T118 nucleoid occlusion protein YP_524757.2 3917153 R 338969 CDS YP_524758.1 89902287 3963372 complement(3917937..3919394) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3919394 3963372 Rfer_3522 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524758.1 3917937 R 338969 CDS YP_524759.1 89902288 3963373 complement(3919398..3920105) 1 NC_007908.1 two component transcriptional regulator 3920105 3963373 Rfer_3523 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_524759.1 3919398 R 338969 CDS YP_524760.1 89902289 3960391 complement(3920254..3921144) 1 NC_007908.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 3921144 3960391 Rfer_3524 Rhodoferax ferrireducens T118 acetylglutamate kinase YP_524760.1 3920254 R 338969 CDS YP_524761.1 89902290 3960392 complement(3921153..3921524) 1 NC_007908.1 histone-like protein nucleoid-structuring protein H-NS 3921524 3960392 Rfer_3525 Rhodoferax ferrireducens T118 histone-like protein nucleoid-structuring protein H-NS YP_524761.1 3921153 R 338969 CDS YP_524762.1 89902291 3960393 complement(3921900..3923897) 1 NC_007908.1 short chain dehydrogenase 3923897 3960393 Rfer_3526 Rhodoferax ferrireducens T118 short chain dehydrogenase YP_524762.1 3921900 R 338969 CDS YP_524763.1 89902292 3960394 3924108..3924710 1 NC_007908.1 poly granule associated 3924710 3960394 Rfer_3527 Rhodoferax ferrireducens T118 poly granule associated YP_524763.1 3924108 D 338969 CDS YP_524764.1 89902293 3960395 3924930..3926192 1 NC_007908.1 patatin 3926192 3960395 Rfer_3528 Rhodoferax ferrireducens T118 patatin YP_524764.1 3924930 D 338969 CDS YP_524765.1 89902294 3960396 3926186..3926848 1 NC_007908.1 TetR family transcriptional regulator 3926848 3960396 Rfer_3529 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_524765.1 3926186 D 338969 CDS YP_524766.1 89902295 3960397 3926882..3927658 1 NC_007908.1 hypothetical protein 3927658 3960397 Rfer_3530 Rhodoferax ferrireducens T118 hypothetical protein YP_524766.1 3926882 D 338969 CDS YP_524767.1 89902296 3960398 complement(3927722..3929212) 1 NC_007908.1 hypothetical protein 3929212 3960398 Rfer_3531 Rhodoferax ferrireducens T118 hypothetical protein YP_524767.1 3927722 R 338969 CDS YP_524768.1 89902297 3960399 3929429..3929683 1 NC_007908.1 acyl-CoA-binding protein 3929683 3960399 Rfer_3532 Rhodoferax ferrireducens T118 acyl-CoA-binding protein YP_524768.1 3929429 D 338969 CDS YP_524769.1 89902298 3960400 complement(3929752..3930090) 1 NC_007908.1 hypothetical protein 3930090 3960400 Rfer_3533 Rhodoferax ferrireducens T118 hypothetical protein YP_524769.1 3929752 R 338969 CDS YP_524770.1 89902299 3960401 complement(3930083..3931165) 1 NC_007908.1 putative zinc protease 3931165 3960401 Rfer_3534 Rhodoferax ferrireducens T118 putative zinc protease YP_524770.1 3930083 R 338969 CDS YP_524771.1 89902300 3960402 3931193..3931537 1 NC_007908.1 hypothetical protein 3931537 3960402 Rfer_3535 Rhodoferax ferrireducens T118 hypothetical protein YP_524771.1 3931193 D 338969 CDS YP_524772.1 89902301 3960403 complement(3931570..3932826) 1 NC_007908.1 putative phenylacetate-CoA ligase 3932826 3960403 Rfer_3536 Rhodoferax ferrireducens T118 putative phenylacetate-CoA ligase YP_524772.1 3931570 R 338969 CDS YP_524773.1 89902302 3960404 complement(3932883..3933692) 1 NC_007908.1 ABC transporter-like protein 3933692 3960404 Rfer_3537 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524773.1 3932883 R 338969 CDS YP_524774.1 89902303 3960405 complement(3933835..3935148) 1 NC_007908.1 hypothetical protein 3935148 3960405 Rfer_3538 Rhodoferax ferrireducens T118 hypothetical protein YP_524774.1 3933835 R 338969 CDS YP_524775.1 89902304 3960406 complement(3935217..3936293) 1 NC_007908.1 inner-membrane translocator 3936293 3960406 Rfer_3539 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524775.1 3935217 R 338969 CDS YP_524776.1 89902305 3960407 complement(3936317..3937246) 1 NC_007908.1 inner-membrane translocator 3937246 3960407 Rfer_3540 Rhodoferax ferrireducens T118 inner-membrane translocator YP_524776.1 3936317 R 338969 CDS YP_524777.1 89902306 3960408 complement(3937249..3938031) 1 NC_007908.1 ABC transporter-like protein 3938031 3960408 Rfer_3541 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524777.1 3937249 R 338969 CDS YP_524778.1 89902307 3960409 complement(3938028..3939974) 1 NC_007908.1 AMP-dependent synthetase and ligase 3939974 3960409 Rfer_3542 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_524778.1 3938028 R 338969 CDS YP_524779.1 89902308 3961135 3940256..3940966 1 NC_007908.1 Crp/FNR family transcriptional regulator 3940966 3961135 Rfer_3543 Rhodoferax ferrireducens T118 Crp/FNR family transcriptional regulator YP_524779.1 3940256 D 338969 CDS YP_524780.1 89902309 3961136 3941024..3941938 1 NC_007908.1 RNA-binding S4 3941938 3961136 Rfer_3544 Rhodoferax ferrireducens T118 RNA-binding S4 YP_524780.1 3941024 D 338969 CDS YP_524781.1 89902310 3961137 3942094..3943365 1 NC_007908.1 PGAP1-like protein 3943365 3961137 Rfer_3545 Rhodoferax ferrireducens T118 PGAP1-like protein YP_524781.1 3942094 D 338969 CDS YP_524782.1 89902311 3961138 complement(3943374..3944222) 1 NC_007908.1 putative PAS/PAC sensor protein 3944222 3961138 Rfer_3546 Rhodoferax ferrireducens T118 putative PAS/PAC sensor protein YP_524782.1 3943374 R 338969 CDS YP_524783.1 89902312 3961139 complement(3944298..3945242) 1 NC_007908.1 diguanylate cyclase 3945242 3961139 Rfer_3547 Rhodoferax ferrireducens T118 diguanylate cyclase YP_524783.1 3944298 R 338969 CDS YP_524784.1 89902313 3961140 complement(3945242..3948265) 1 NC_007908.1 PAS/PAC sensor hybrid histidine kinase 3948265 3961140 Rfer_3548 Rhodoferax ferrireducens T118 PAS/PAC sensor hybrid histidine kinase YP_524784.1 3945242 R 338969 CDS YP_524785.1 89902314 3961141 complement(3948374..3949093) 1 NC_007908.1 cyclic nucleotide-binding domain-containing protein 3949093 3961141 Rfer_3549 Rhodoferax ferrireducens T118 cyclic nucleotide-binding domain-containing protein YP_524785.1 3948374 R 338969 CDS YP_524786.1 89902315 3961143 3949537..3951528 1 NC_007908.1 molecular chaperone; heat shock protein 90 3951528 3961143 Rfer_3551 Rhodoferax ferrireducens T118 heat shock protein 90 YP_524786.1 3949537 D 338969 CDS YP_524787.1 89902316 3961144 complement(3951713..3953011) 1 NC_007908.1 dehydrogenase catalytic domain-containing protein 3953011 3961144 Rfer_3552 Rhodoferax ferrireducens T118 dehydrogenase catalytic domain-containing protein YP_524787.1 3951713 R 338969 CDS YP_524788.1 89902317 3961145 complement(3953013..3954050) 1 NC_007908.1 transketolase 3954050 3961145 Rfer_3553 Rhodoferax ferrireducens T118 transketolase YP_524788.1 3953013 R 338969 CDS YP_524789.1 89902318 3961146 complement(3954053..3955288) 1 NC_007908.1 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) 3955288 3961146 Rfer_3554 Rhodoferax ferrireducens T118 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) YP_524789.1 3954053 R 338969 CDS YP_524790.1 89902319 3961147 complement(3955599..3956237) 1 NC_007908.1 glutathione S-transferase-like protein 3956237 3961147 Rfer_3555 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_524790.1 3955599 R 338969 CDS YP_524791.1 89902320 3961148 complement(3956284..3956772) 1 NC_007908.1 hypothetical protein 3956772 3961148 Rfer_3556 Rhodoferax ferrireducens T118 hypothetical protein YP_524791.1 3956284 R 338969 CDS YP_524792.1 89902321 3961149 complement(3957052..3957873) 1 NC_007908.1 ABC transporter 3957873 3961149 Rfer_3557 Rhodoferax ferrireducens T118 ABC transporter YP_524792.1 3957052 R 338969 CDS YP_524793.1 89902322 3961150 complement(3957870..3958793) 1 NC_007908.1 ABC transporter-like protein 3958793 3961150 Rfer_3558 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524793.1 3957870 R 338969 CDS YP_524794.1 89902323 3961151 3958951..3960177 1 NC_007908.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3960177 purT 3961151 purT Rhodoferax ferrireducens T118 phosphoribosylglycinamide formyltransferase 2 YP_524794.1 3958951 D 338969 CDS YP_524795.1 89902324 3961152 complement(3960269..3960934) 1 NC_007908.1 hypothetical protein 3960934 3961152 Rfer_3560 Rhodoferax ferrireducens T118 hypothetical protein YP_524795.1 3960269 R 338969 CDS YP_524796.1 89902325 3961153 complement(3960946..3961302) 1 NC_007908.1 putative lipoprotein 3961302 3961153 Rfer_3561 Rhodoferax ferrireducens T118 putative lipoprotein YP_524796.1 3960946 R 338969 CDS YP_524797.1 89902326 3961154 complement(3961332..3962006) 1 NC_007908.1 curli production assembly/transport component CsgG 3962006 3961154 Rfer_3562 Rhodoferax ferrireducens T118 curli production assembly/transport component CsgG YP_524797.1 3961332 R 338969 CDS YP_524798.1 89902327 3961408 complement(3962008..3962370) 1 NC_007908.1 hypothetical protein 3962370 3961408 Rfer_3563 Rhodoferax ferrireducens T118 hypothetical protein YP_524798.1 3962008 R 338969 CDS YP_524799.1 89902328 3961409 complement(3962815..3963609) 1 NC_007908.1 DeoR family transcriptional regulator 3963609 3961409 Rfer_3564 Rhodoferax ferrireducens T118 DeoR family transcriptional regulator YP_524799.1 3962815 R 338969 CDS YP_524800.1 89902329 3961410 complement(3963695..3964690) 1 NC_007908.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3964690 pdxA 3961410 pdxA Rhodoferax ferrireducens T118 4-hydroxythreonine-4-phosphate dehydrogenase YP_524800.1 3963695 R 338969 CDS YP_524801.1 89902330 3961411 complement(3964708..3965937) 1 NC_007908.1 hypothetical protein 3965937 3961411 Rfer_3566 Rhodoferax ferrireducens T118 hypothetical protein YP_524801.1 3964708 R 338969 CDS YP_524802.1 89902331 3961412 complement(3965937..3966911) 1 NC_007908.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 3966911 3961412 Rfer_3567 Rhodoferax ferrireducens T118 2-keto-3-deoxygluconate permease YP_524802.1 3965937 R 338969 CDS YP_524803.1 89902332 3961413 complement(3967524..3968132) 1 NC_007908.1 type 12 methyltransferase 3968132 3961413 Rfer_3568 Rhodoferax ferrireducens T118 type 12 methyltransferase YP_524803.1 3967524 R 338969 CDS YP_524804.1 89902333 3961414 complement(3968221..3969759) 1 NC_007908.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 3969759 3961414 Rfer_3569 Rhodoferax ferrireducens T118 AMP nucleosidase YP_524804.1 3968221 R 338969 CDS YP_524805.1 89902334 3961415 3969782..3971221 1 NC_007908.1 beta-lactamase 3971221 3961415 Rfer_3570 Rhodoferax ferrireducens T118 beta-lactamase YP_524805.1 3969782 D 338969 CDS YP_524806.1 89902335 3961416 3971325..3972881 1 NC_007908.1 glutamate--cysteine ligase, monofunctional 3972881 3961416 Rfer_3571 Rhodoferax ferrireducens T118 glutamate--cysteine ligase, monofunctional YP_524806.1 3971325 D 338969 CDS YP_524807.1 89902336 3961417 complement(3972888..3974864) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3974864 3961417 Rfer_3572 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_524807.1 3972888 R 338969 CDS YP_524808.1 89902337 3961418 complement(3974907..3975596) 1 NC_007908.1 response regulator receiver domain-containing protein 3975596 3961418 Rfer_3573 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_524808.1 3974907 R 338969 CDS YP_524809.1 89902338 3961419 complement(3975621..3976649) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 3976649 3961419 Rfer_3574 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524809.1 3975621 R 338969 CDS YP_524810.1 89902339 3961420 complement(3976825..3977976) 1 NC_007908.1 peptidase M14, carboxypeptidase A 3977976 3961420 Rfer_3575 Rhodoferax ferrireducens T118 peptidase M14, carboxypeptidase A YP_524810.1 3976825 R 338969 CDS YP_524811.1 89902340 3961421 complement(3978012..3979352) 1 NC_007908.1 anaerobic c4-dicarboxylate membrane transporter family protein 3979352 3961421 Rfer_3576 Rhodoferax ferrireducens T118 anaerobic c4-dicarboxylate membrane transporter family protein YP_524811.1 3978012 R 338969 CDS YP_524812.1 89902341 3961422 3979493..3980914 1 NC_007908.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 3980914 3961422 Rfer_3577 Rhodoferax ferrireducens T118 ATP-dependent RNA helicase DbpA YP_524812.1 3979493 D 338969 CDS YP_524813.1 89902342 3961423 3981060..3981296 1 NC_007908.1 hypothetical protein 3981296 3961423 Rfer_3578 Rhodoferax ferrireducens T118 hypothetical protein YP_524813.1 3981060 D 338969 CDS YP_524814.1 89902343 3961424 complement(3981305..3982570) 1 NC_007908.1 DEAD/DEAH box helicase-like protein 3982570 3961424 Rfer_3579 Rhodoferax ferrireducens T118 DEAD/DEAH box helicase-like protein YP_524814.1 3981305 R 338969 CDS YP_524815.1 89902344 3961425 3982673..3983599 1 NC_007908.1 beta-lactamase-like protein 3983599 3961425 Rfer_3580 Rhodoferax ferrireducens T118 beta-lactamase-like protein YP_524815.1 3982673 D 338969 CDS YP_524816.1 89902345 3961426 complement(3983710..3985968) 1 NC_007908.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 3985968 3961426 Rfer_3581 Rhodoferax ferrireducens T118 malate synthase G YP_524816.1 3983710 R 338969 CDS YP_524817.1 89902346 3962573 complement(3986051..3986818) 1 NC_007908.1 haloacid dehalogenase 3986818 3962573 Rfer_3582 Rhodoferax ferrireducens T118 haloacid dehalogenase YP_524817.1 3986051 R 338969 CDS YP_524818.1 89902347 3962574 3987031..3988518 1 NC_007908.1 hypothetical protein 3988518 3962574 Rfer_3583 Rhodoferax ferrireducens T118 hypothetical protein YP_524818.1 3987031 D 338969 CDS YP_524819.1 89902348 3962575 complement(3988604..3989431) 1 NC_007908.1 GntR-like protein 3989431 3962575 Rfer_3584 Rhodoferax ferrireducens T118 GntR-like protein YP_524819.1 3988604 R 338969 CDS YP_524820.1 89902349 3962576 3989618..3991051 1 NC_007908.1 betaine-aldehyde dehydrogenase 3991051 3962576 Rfer_3585 Rhodoferax ferrireducens T118 betaine-aldehyde dehydrogenase YP_524820.1 3989618 D 338969 CDS YP_524821.1 89902350 3962577 3991127..3991888 1 NC_007908.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 3991888 fabG 3962577 fabG Rhodoferax ferrireducens T118 3-ketoacyl-(acyl-carrier-protein) reductase YP_524821.1 3991127 D 338969 CDS YP_524822.1 89902351 3962579 complement(3992181..3992858) 1 NC_007908.1 response regulator receiver domain-containing protein 3992858 3962579 Rfer_3587 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_524822.1 3992181 R 338969 CDS YP_524823.1 89902352 3962580 complement(3992861..3995188) 1 NC_007908.1 multi-sensor signal transduction histidine kinase 3995188 3962580 Rfer_3588 Rhodoferax ferrireducens T118 multi-sensor signal transduction histidine kinase YP_524823.1 3992861 R 338969 CDS YP_524824.1 89902353 3962581 complement(3995185..3995796) 1 NC_007908.1 hypothetical protein 3995796 3962581 Rfer_3589 Rhodoferax ferrireducens T118 hypothetical protein YP_524824.1 3995185 R 338969 CDS YP_524825.1 89902354 3962582 complement(3995777..3997141) 1 NC_007908.1 sun protein 3997141 3962582 Rfer_3590 Rhodoferax ferrireducens T118 sun protein YP_524825.1 3995777 R 338969 CDS YP_524826.1 89902355 3962583 complement(3997240..4001457) 1 NC_007908.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4001457 3962583 Rfer_3591 Rhodoferax ferrireducens T118 DNA-directed RNA polymerase subunit beta' YP_524826.1 3997240 R 338969 CDS YP_524827.1 89902356 3962584 complement(4001536..4005588) 1 NC_007908.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4005588 rpoB 3962584 rpoB Rhodoferax ferrireducens T118 DNA-directed RNA polymerase subunit beta YP_524827.1 4001536 R 338969 CDS YP_524828.1 89902357 3962585 complement(4005918..4006289) 1 NC_007908.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4006289 rplL 3962585 rplL Rhodoferax ferrireducens T118 50S ribosomal protein L7/L12 YP_524828.1 4005918 R 338969 CDS YP_524829.1 89902358 3962586 complement(4006332..4006868) 1 NC_007908.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4006868 rplJ 3962586 rplJ Rhodoferax ferrireducens T118 50S ribosomal protein L10 YP_524829.1 4006332 R 338969 CDS YP_524830.1 89902359 3962587 complement(4007137..4007832) 1 NC_007908.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4007832 rplA 3962587 rplA Rhodoferax ferrireducens T118 50S ribosomal protein L1 YP_524830.1 4007137 R 338969 CDS YP_524831.1 89902360 3962588 complement(4007833..4008264) 1 NC_007908.1 50S ribosomal protein L11 4008264 3962588 Rfer_3596 Rhodoferax ferrireducens T118 50S ribosomal protein L11 YP_524831.1 4007833 R 338969 CDS YP_524832.1 89902361 3962589 complement(4008451..4009059) 1 NC_007908.1 NusG antitermination factor 4009059 3962589 Rfer_3597 Rhodoferax ferrireducens T118 NusG antitermination factor YP_524832.1 4008451 R 338969 CDS YP_524833.1 89902362 3962590 complement(4009059..4009442) 1 NC_007908.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4009442 secE 3962590 secE Rhodoferax ferrireducens T118 preprotein translocase subunit SecE YP_524833.1 4009059 R 338969 CDS YP_524834.1 89902363 3962611 complement(4009644..4010834) 1 NC_007908.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4010834 3962611 Rfer_3599 Rhodoferax ferrireducens T118 elongation factor Tu YP_524834.1 4009644 R 338969 CDS YP_524835.1 89902364 3962615 complement(4011327..4012079) 1 NC_007908.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 4012079 3962615 Rfer_3600 Rhodoferax ferrireducens T118 uracil-DNA glycosylase YP_524835.1 4011327 R 338969 CDS YP_524836.1 89902365 3962616 complement(4012081..4012875) 1 NC_007908.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 4012875 trpC 3962616 trpC Rhodoferax ferrireducens T118 indole-3-glycerol-phosphate synthase YP_524836.1 4012081 R 338969 CDS YP_524837.1 89902366 3962617 complement(4012872..4013924) 1 NC_007908.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 4013924 trpD 3962617 trpD Rhodoferax ferrireducens T118 anthranilate phosphoribosyltransferase YP_524837.1 4012872 R 338969 CDS YP_524838.1 89902367 3962619 complement(4014224..4015291) 1 NC_007908.1 threonine aldolase 4015291 3962619 Rfer_3604 Rhodoferax ferrireducens T118 threonine aldolase YP_524838.1 4014224 R 338969 CDS YP_524839.1 89902368 3962620 complement(4015393..4016019) 1 NC_007908.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 4016019 3962620 Rfer_3605 Rhodoferax ferrireducens T118 anthranilate synthase component II YP_524839.1 4015393 R 338969 CDS YP_524840.1 89902369 3962621 complement(4016045..4018318) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 4018318 3962621 Rfer_3606 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_524840.1 4016045 R 338969 CDS YP_524841.1 89902370 3962622 complement(4018315..4019826) 1 NC_007908.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 4019826 3962622 Rfer_3607 Rhodoferax ferrireducens T118 anthranilate synthase component I YP_524841.1 4018315 R 338969 CDS YP_524842.1 89902371 3962623 4020206..4020790 1 NC_007908.1 putative lipoprotein transmembrane 4020790 3962623 Rfer_3608 Rhodoferax ferrireducens T118 putative lipoprotein transmembrane YP_524842.1 4020206 D 338969 CDS YP_524843.1 89902372 3962624 4020874..4022664 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 4022664 3962624 Rfer_3609 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524843.1 4020874 D 338969 CDS YP_524844.1 89902373 3962625 4022766..4024301 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 4024301 3962625 Rfer_3610 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_524844.1 4022766 D 338969 CDS YP_524845.1 89902374 3962704 complement(4024298..4025086) 1 NC_007908.1 phosphoglycolate phosphatase 4025086 3962704 Rfer_3611 Rhodoferax ferrireducens T118 phosphoglycolate phosphatase YP_524845.1 4024298 R 338969 CDS YP_524846.1 89902375 3962705 complement(4025110..4028451) 1 NC_007908.1 methylmalonyl-CoA mutase 4028451 3962705 Rfer_3612 Rhodoferax ferrireducens T118 methylmalonyl-CoA mutase YP_524846.1 4025110 R 338969 CDS YP_524847.1 89902376 3962706 4028646..4029128 1 NC_007908.1 rhodanese-like protein 4029128 3962706 Rfer_3613 Rhodoferax ferrireducens T118 rhodanese-like protein YP_524847.1 4028646 D 338969 CDS YP_524848.1 89902377 3962707 4029142..4029909 1 NC_007908.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 4029909 3962707 Rfer_3614 Rhodoferax ferrireducens T118 pantothenate kinase YP_524848.1 4029142 D 338969 CDS YP_524849.1 89902378 3962708 complement(4029975..4031168) 1 NC_007908.1 peptidase M20D, amidohydrolase 4031168 3962708 Rfer_3615 Rhodoferax ferrireducens T118 peptidase M20D, amidohydrolase YP_524849.1 4029975 R 338969 CDS YP_524850.1 89902379 3962709 4031338..4032201 1 NC_007908.1 endonuclease/exonuclease/phosphatase 4032201 3962709 Rfer_3616 Rhodoferax ferrireducens T118 endonuclease/exonuclease/phosphatase YP_524850.1 4031338 D 338969 CDS YP_524851.1 89902380 3962710 4032198..4033448 1 NC_007908.1 cardiolipin synthase 2 4033448 3962710 Rfer_3617 Rhodoferax ferrireducens T118 cardiolipin synthase 2 YP_524851.1 4032198 D 338969 CDS YP_524852.1 89902381 3962711 4033445..4034446 1 NC_007908.1 hypothetical protein 4034446 3962711 Rfer_3618 Rhodoferax ferrireducens T118 hypothetical protein YP_524852.1 4033445 D 338969 CDS YP_524853.1 89902382 3962712 4034501..4036612 1 NC_007908.1 molybdopterin oxidoreductase 4036612 3962712 Rfer_3619 Rhodoferax ferrireducens T118 molybdopterin oxidoreductase YP_524853.1 4034501 D 338969 CDS YP_524854.1 89902383 3962713 complement(4036690..4037565) 1 NC_007908.1 LysR family transcriptional regulator 4037565 3962713 Rfer_3620 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_524854.1 4036690 R 338969 CDS YP_524855.1 89902384 3962714 4037623..4038582 1 NC_007908.1 hypothetical protein 4038582 3962714 Rfer_3621 Rhodoferax ferrireducens T118 hypothetical protein YP_524855.1 4037623 D 338969 CDS YP_524856.1 89902385 3962715 4038812..4039522 1 NC_007908.1 TetR family transcriptional regulator 4039522 3962715 Rfer_3622 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_524856.1 4038812 D 338969 CDS YP_524857.1 89902386 3962716 4039538..4040734 1 NC_007908.1 secretion protein HlyD 4040734 3962716 Rfer_3623 Rhodoferax ferrireducens T118 secretion protein HlyD YP_524857.1 4039538 D 338969 CDS YP_524858.1 89902387 3962717 4040731..4041924 1 NC_007908.1 hypothetical protein 4041924 3962717 Rfer_3624 Rhodoferax ferrireducens T118 hypothetical protein YP_524858.1 4040731 D 338969 CDS YP_524859.1 89902388 3962718 4041921..4042652 1 NC_007908.1 ABC transporter-like protein 4042652 3962718 Rfer_3625 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524859.1 4041921 D 338969 CDS YP_524860.1 89902389 3962719 4042789..4045311 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 4045311 3962719 Rfer_3626 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_524860.1 4042789 D 338969 CDS YP_524861.1 89902390 3962720 complement(4045275..4045745) 1 NC_007908.1 thioesterase superfamily protein 4045745 3962720 Rfer_3627 Rhodoferax ferrireducens T118 thioesterase superfamily protein YP_524861.1 4045275 R 338969 CDS YP_524862.1 89902391 3962721 4045802..4046167 1 NC_007908.1 alkylhydroperoxidase 4046167 3962721 Rfer_3628 Rhodoferax ferrireducens T118 alkylhydroperoxidase YP_524862.1 4045802 D 338969 CDS YP_524863.1 89902392 3962743 4046561..4047199 1 NC_007908.1 toluene tolerance 4047199 3962743 Rfer_3630 Rhodoferax ferrireducens T118 toluene tolerance YP_524863.1 4046561 D 338969 CDS YP_524864.1 89902393 3962744 complement(4047383..4048444) 1 NC_007908.1 rhodanese-like protein 4048444 3962744 Rfer_3631 Rhodoferax ferrireducens T118 rhodanese-like protein YP_524864.1 4047383 R 338969 CDS YP_524865.1 89902394 3962745 complement(4048538..4048858) 1 NC_007908.1 hypothetical protein 4048858 3962745 Rfer_3632 Rhodoferax ferrireducens T118 hypothetical protein YP_524865.1 4048538 R 338969 CDS YP_524866.1 89902395 3962746 complement(4048933..4050702) 1 NC_007908.1 hypothetical protein 4050702 3962746 Rfer_3633 Rhodoferax ferrireducens T118 hypothetical protein YP_524866.1 4048933 R 338969 CDS YP_524867.1 89902396 3962747 complement(4050748..4051374) 1 NC_007908.1 cytochrome B561 4051374 3962747 Rfer_3634 Rhodoferax ferrireducens T118 cytochrome B561 YP_524867.1 4050748 R 338969 CDS YP_524868.1 89902397 3962748 complement(4051389..4053005) 1 NC_007908.1 cytochrome c family protein 4053005 3962748 Rfer_3635 Rhodoferax ferrireducens T118 cytochrome c family protein YP_524868.1 4051389 R 338969 CDS YP_524869.1 89902398 3962749 complement(4053250..4053612) 1 NC_007908.1 ArsR family transcriptional regulator 4053612 3962749 Rfer_3636 Rhodoferax ferrireducens T118 ArsR family transcriptional regulator YP_524869.1 4053250 R 338969 CDS YP_524870.1 89902399 3962750 complement(4053746..4054324) 1 NC_007908.1 nitroreductase 4054324 3962750 Rfer_3637 Rhodoferax ferrireducens T118 nitroreductase YP_524870.1 4053746 R 338969 CDS YP_524871.1 89902400 3962751 complement(4054562..4055320) 1 NC_007908.1 metal dependent phosphohydrolase 4055320 3962751 Rfer_3638 Rhodoferax ferrireducens T118 metal dependent phosphohydrolase YP_524871.1 4054562 R 338969 CDS YP_524872.1 89902401 3962752 4056069..4056599 1 NC_007908.1 sigma-24 (FecI-like protein) 4056599 3962752 Rfer_3639 Rhodoferax ferrireducens T118 sigma-24 (FecI-like protein) YP_524872.1 4056069 D 338969 CDS YP_524873.1 89902402 3962753 complement(4056678..4057709) 1 NC_007908.1 integrase 4057709 3962753 Rfer_3640 Rhodoferax ferrireducens T118 integrase YP_524873.1 4056678 R 338969 CDS YP_524874.1 89902403 3962754 4057839..4058885 1 NC_007908.1 permease 4058885 3962754 Rfer_3641 Rhodoferax ferrireducens T118 permease YP_524874.1 4057839 D 338969 CDS YP_524875.1 89902404 3962755 4058957..4059193 1 NC_007908.1 thiol-disulfide isomerase 4059193 3962755 Rfer_3642 Rhodoferax ferrireducens T118 thiol-disulfide isomerase YP_524875.1 4058957 D 338969 CDS YP_524876.1 89902405 3962756 4059215..4059445 1 NC_007908.1 hypothetical protein 4059445 3962756 Rfer_3643 Rhodoferax ferrireducens T118 hypothetical protein YP_524876.1 4059215 D 338969 CDS YP_524877.1 89902406 3962757 4059570..4060478 1 NC_007908.1 cation diffusion facilitator family transporter 4060478 3962757 Rfer_3644 Rhodoferax ferrireducens T118 cation diffusion facilitator family transporter YP_524877.1 4059570 D 338969 CDS YP_524878.1 89902407 3962758 complement(4060475..4061806) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 4061806 3962758 Rfer_3645 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524878.1 4060475 R 338969 CDS YP_524879.1 89902408 3962759 complement(4061803..4062534) 1 NC_007908.1 two component transcriptional regulator 4062534 3962759 Rfer_3646 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_524879.1 4061803 R 338969 CDS YP_524880.1 89902409 3962760 4062765..4063142 1 NC_007908.1 hypothetical protein 4063142 3962760 Rfer_3647 Rhodoferax ferrireducens T118 hypothetical protein YP_524880.1 4062765 D 338969 CDS YP_524881.1 89902410 3962761 complement(4063211..4063681) 1 NC_007908.1 AsnC family transcriptional regulator 4063681 3962761 Rfer_3648 Rhodoferax ferrireducens T118 AsnC family transcriptional regulator YP_524881.1 4063211 R 338969 CDS YP_524882.1 89902411 3962762 4063828..4065084 1 NC_007908.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 4065084 3962762 Rfer_3649 Rhodoferax ferrireducens T118 methionine gamma-lyase YP_524882.1 4063828 D 338969 CDS YP_524883.1 89902412 3963978 4065109..4067736 1 NC_007908.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 4067736 3963978 Rfer_3650 Rhodoferax ferrireducens T118 2-oxoacid dehydrogenase subunit E1 YP_524883.1 4065109 D 338969 CDS YP_524884.1 89902413 3963979 4067783..4069150 1 NC_007908.1 hypothetical protein 4069150 3963979 Rfer_3651 Rhodoferax ferrireducens T118 hypothetical protein YP_524884.1 4067783 D 338969 CDS YP_524885.1 89902414 3963980 4069150..4070937 1 NC_007908.1 asparagine synthase 4070937 3963980 Rfer_3652 Rhodoferax ferrireducens T118 asparagine synthase YP_524885.1 4069150 D 338969 CDS YP_524886.1 89902415 3963981 4071015..4071764 1 NC_007908.1 hypothetical protein 4071764 3963981 Rfer_3653 Rhodoferax ferrireducens T118 hypothetical protein YP_524886.1 4071015 D 338969 CDS YP_524887.1 89902416 3963982 4071832..4073790 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase 4073790 3963982 Rfer_3654 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase YP_524887.1 4071832 D 338969 CDS YP_524888.1 89902417 3963983 complement(4073800..4074690) 1 NC_007908.1 patatin 4074690 3963983 Rfer_3655 Rhodoferax ferrireducens T118 patatin YP_524888.1 4073800 R 338969 CDS YP_524889.1 89902418 3963984 4075069..4076031 1 NC_007908.1 hypothetical protein 4076031 3963984 Rfer_3656 Rhodoferax ferrireducens T118 hypothetical protein YP_524889.1 4075069 D 338969 CDS YP_524890.1 89902419 3963987 4077067..4078287 1 NC_007908.1 major facilitator transporter 4078287 3963987 Rfer_3659 Rhodoferax ferrireducens T118 major facilitator transporter YP_524890.1 4077067 D 338969 CDS YP_524891.1 89902420 3963988 complement(4078563..4080254) 1 NC_007908.1 carbamoyltransferase 4080254 3963988 Rfer_3660 Rhodoferax ferrireducens T118 carbamoyltransferase YP_524891.1 4078563 R 338969 CDS YP_524892.1 89902421 3963989 4080403..4081287 1 NC_007908.1 hypothetical protein 4081287 3963989 Rfer_3661 Rhodoferax ferrireducens T118 hypothetical protein YP_524892.1 4080403 D 338969 CDS YP_524893.1 89902422 3963990 4081680..4083461 1 NC_007908.1 glycoside hydrolase family protein 4083461 3963990 Rfer_3662 Rhodoferax ferrireducens T118 glycoside hydrolase family protein YP_524893.1 4081680 D 338969 CDS YP_524894.1 89902423 3963991 complement(4083712..4084779) 1 NC_007908.1 bile acid:sodium symporter 4084779 3963991 Rfer_3663 Rhodoferax ferrireducens T118 bile acid:sodium symporter YP_524894.1 4083712 R 338969 CDS YP_524895.1 89902424 3963992 complement(4084783..4086552) 1 NC_007908.1 arsenite-activated ATPase (arsA) 4086552 3963992 Rfer_3664 Rhodoferax ferrireducens T118 arsenite-activated ATPase (arsA) YP_524895.1 4084783 R 338969 CDS YP_524896.1 89902425 3963993 complement(4086616..4086999) 1 NC_007908.1 arsenical resistance operon trans-acting repressor ArsD 4086999 3963993 Rfer_3665 Rhodoferax ferrireducens T118 arsenical resistance operon trans-acting repressor ArsD YP_524896.1 4086616 R 338969 CDS YP_524897.1 89902426 3963994 complement(4087028..4087510) 1 NC_007908.1 protein tyrosine phosphatase 4087510 3963994 Rfer_3666 Rhodoferax ferrireducens T118 protein tyrosine phosphatase YP_524897.1 4087028 R 338969 CDS YP_524898.1 89902427 3963995 complement(4087579..4087908) 1 NC_007908.1 ArsR family transcriptional regulator 4087908 3963995 Rfer_3667 Rhodoferax ferrireducens T118 ArsR family transcriptional regulator YP_524898.1 4087579 R 338969 CDS YP_524899.1 89902428 3963996 complement(4088027..4088239) 1 NC_007908.1 hypothetical protein 4088239 3963996 Rfer_3668 Rhodoferax ferrireducens T118 hypothetical protein YP_524899.1 4088027 R 338969 CDS YP_524900.1 89902429 3964037 complement(4088287..4089000) 1 NC_007908.1 nucleic acid-binding, OB-fold, tRNA/helicase-type 4089000 3964037 Rfer_3669 Rhodoferax ferrireducens T118 nucleic acid-binding, OB-fold, tRNA/helicase-type YP_524900.1 4088287 R 338969 CDS YP_524901.1 89902430 3964038 complement(4089023..4090723) 1 NC_007908.1 FAD dependent oxidoreductase 4090723 3964038 Rfer_3670 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_524901.1 4089023 R 338969 CDS YP_524902.1 89902431 3964039 complement(4090858..4092591) 1 NC_007908.1 extracellular solute-binding protein 4092591 3964039 Rfer_3671 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_524902.1 4090858 R 338969 CDS YP_524903.1 89902432 3964040 complement(4092679..4092987) 1 NC_007908.1 putative integral membrane protein 4092987 3964040 Rfer_3672 Rhodoferax ferrireducens T118 putative integral membrane protein YP_524903.1 4092679 R 338969 CDS YP_524904.1 89902433 3964041 complement(4093001..4093813) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 4093813 3964041 Rfer_3673 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524904.1 4093001 R 338969 CDS YP_524905.1 89902434 3964042 complement(4093806..4094699) 1 NC_007908.1 binding-protein-dependent transport systems inner membrane component 4094699 3964042 Rfer_3674 Rhodoferax ferrireducens T118 binding-protein-dependent transport systems inner membrane component YP_524905.1 4093806 R 338969 CDS YP_524906.1 89902435 3964043 complement(4094696..4095772) 1 NC_007908.1 ABC transporter-like protein 4095772 3964043 Rfer_3675 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524906.1 4094696 R 338969 CDS YP_524907.1 89902436 3964044 complement(4095774..4096847) 1 NC_007908.1 ABC transporter-like protein 4096847 3964044 Rfer_3676 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524907.1 4095774 R 338969 CDS YP_524908.1 89902437 3964045 4097007..4097771 1 NC_007908.1 DeoR family transcriptional regulator 4097771 3964045 Rfer_3677 Rhodoferax ferrireducens T118 DeoR family transcriptional regulator YP_524908.1 4097007 D 338969 CDS YP_524909.1 89902438 3964046 4097768..4099258 1 NC_007908.1 glycerol kinase 4099258 3964046 Rfer_3678 Rhodoferax ferrireducens T118 glycerol kinase YP_524909.1 4097768 D 338969 CDS YP_524910.1 89902439 3964047 4099344..4100159 1 NC_007908.1 pyrroline-5-carboxylate reductase 4100159 3964047 Rfer_3679 Rhodoferax ferrireducens T118 pyrroline-5-carboxylate reductase YP_524910.1 4099344 D 338969 CDS YP_524911.1 89902440 3964048 complement(4100172..4101062) 1 NC_007908.1 4-hydroxybenzoate polyprenyl transferase 4101062 3964048 Rfer_3680 Rhodoferax ferrireducens T118 4-hydroxybenzoate polyprenyl transferase YP_524911.1 4100172 R 338969 CDS YP_524912.1 89902441 3964049 complement(4101164..4102117) 1 NC_007908.1 LysR family transcriptional regulator 4102117 3964049 Rfer_3681 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_524912.1 4101164 R 338969 CDS YP_524913.1 89902442 3964050 complement(4102174..4102527) 1 NC_007908.1 hypothetical protein 4102527 3964050 Rfer_3682 Rhodoferax ferrireducens T118 hypothetical protein YP_524913.1 4102174 R 338969 CDS YP_524914.1 89902443 3964051 complement(4102532..4103368) 1 NC_007908.1 metallophosphoesterase 4103368 3964051 Rfer_3683 Rhodoferax ferrireducens T118 metallophosphoesterase YP_524914.1 4102532 R 338969 CDS YP_524915.1 89902444 3964052 complement(4103426..4104793) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 4104793 3964052 Rfer_3684 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_524915.1 4103426 R 338969 CDS YP_524916.1 89902445 3964053 complement(4104793..4105464) 1 NC_007908.1 two component transcriptional regulator 4105464 3964053 Rfer_3685 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_524916.1 4104793 R 338969 CDS YP_524917.1 89902446 3964054 complement(4105488..4105760) 1 NC_007908.1 peptidase 4105760 3964054 Rfer_3686 Rhodoferax ferrireducens T118 peptidase YP_524917.1 4105488 R 338969 CDS YP_524918.1 89902447 3964055 complement(4105814..4106341) 1 NC_007908.1 17 kDa surface antigen 4106341 3964055 Rfer_3687 Rhodoferax ferrireducens T118 17 kDa surface antigen YP_524918.1 4105814 R 338969 CDS YP_524919.1 89902448 3964056 complement(4106480..4108723) 1 NC_007908.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4108723 3964056 Rfer_3688 Rhodoferax ferrireducens T118 ATP-dependent DNA helicase RecG YP_524919.1 4106480 R 338969 CDS YP_524920.1 89902449 3962341 4120480..4121754 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 4121754 3962341 Rfer_3689 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_524920.1 4120480 D 338969 CDS YP_524921.1 89902450 3962342 complement(4121854..4123047) 1 NC_007908.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 4123047 pgk 3962342 pgk Rhodoferax ferrireducens T118 phosphoglycerate kinase YP_524921.1 4121854 R 338969 CDS YP_524922.1 89902451 3962343 complement(4123159..4124286) 1 NC_007908.1 class V aminotransferase 4124286 3962343 Rfer_3691 Rhodoferax ferrireducens T118 class V aminotransferase YP_524922.1 4123159 R 338969 CDS YP_524923.1 89902452 3962344 complement(4124420..4125364) 1 NC_007908.1 hypothetical protein 4125364 3962344 Rfer_3692 Rhodoferax ferrireducens T118 hypothetical protein YP_524923.1 4124420 R 338969 CDS YP_524924.1 89902453 3962345 complement(4125375..4126109) 1 NC_007908.1 phospholipid/glycerol acyltransferase 4126109 3962345 Rfer_3693 Rhodoferax ferrireducens T118 phospholipid/glycerol acyltransferase YP_524924.1 4125375 R 338969 CDS YP_524925.1 89902454 3962346 complement(4126158..4126754) 1 NC_007908.1 histidinol-phosphate phosphatase 4126754 3962346 Rfer_3694 Rhodoferax ferrireducens T118 histidinol-phosphate phosphatase YP_524925.1 4126158 R 338969 CDS YP_524926.1 89902455 3962347 complement(4126786..4129020) 1 NC_007908.1 glycine--tRNA ligase 4129020 3962347 Rfer_3695 Rhodoferax ferrireducens T118 glycine--tRNA ligase YP_524926.1 4126786 R 338969 CDS YP_524927.1 89902456 3962348 complement(4129109..4130086) 1 NC_007908.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 4130086 glyQ 3962348 glyQ Rhodoferax ferrireducens T118 glycyl-tRNA synthetase subunit alpha YP_524927.1 4129109 R 338969 CDS YP_524928.1 89902457 3962349 complement(4130083..4131807) 1 NC_007908.1 apolipoprotein N-acyltransferase 4131807 3962349 Rfer_3697 Rhodoferax ferrireducens T118 apolipoprotein N-acyltransferase YP_524928.1 4130083 R 338969 CDS YP_524929.1 89902458 3962350 complement(4131794..4132660) 1 NC_007908.1 hypothetical protein 4132660 3962350 Rfer_3698 Rhodoferax ferrireducens T118 hypothetical protein YP_524929.1 4131794 R 338969 CDS YP_524930.1 89902459 3962351 complement(4132749..4133489) 1 NC_007908.1 GCN5-like protein N-acetyltransferase 4133489 3962351 Rfer_3699 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_524930.1 4132749 R 338969 CDS YP_524931.1 89902460 3962352 4133715..4134041 1 NC_007908.1 flagellar transcriptional activator FlhD 4134041 3962352 Rfer_3700 Rhodoferax ferrireducens T118 flagellar transcriptional activator FlhD YP_524931.1 4133715 D 338969 CDS YP_524932.1 89902461 3962353 4134054..4134599 1 NC_007908.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 4134599 3962353 Rfer_3701 Rhodoferax ferrireducens T118 transcriptional activator FlhC YP_524932.1 4134054 D 338969 CDS YP_524933.1 89902462 3962354 4134797..4135609 1 NC_007908.1 MotA/TolQ/ExbB proton channel 4135609 3962354 Rfer_3702 Rhodoferax ferrireducens T118 MotA/TolQ/ExbB proton channel YP_524933.1 4134797 D 338969 CDS YP_524934.1 89902463 3962355 4135627..4136571 1 NC_007908.1 OmpA/MotB 4136571 3962355 Rfer_3703 Rhodoferax ferrireducens T118 OmpA/MotB YP_524934.1 4135627 D 338969 CDS YP_524935.1 89902464 3962356 4136633..4137022 1 NC_007908.1 response regulator receiver domain-containing protein 4137022 3962356 Rfer_3704 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_524935.1 4136633 D 338969 CDS YP_524936.1 89902465 3962357 4137027..4137674 1 NC_007908.1 chemotaxis phosphatase, CheZ 4137674 3962357 Rfer_3705 Rhodoferax ferrireducens T118 chemotaxis phosphatase, CheZ YP_524936.1 4137027 D 338969 CDS YP_524937.1 89902466 3962358 4137770..4138927 1 NC_007908.1 type III secretion exporter 4138927 3962358 Rfer_3706 Rhodoferax ferrireducens T118 type III secretion exporter YP_524937.1 4137770 D 338969 CDS YP_524938.1 89902467 3962359 4138924..4141005 1 NC_007908.1 flagellar biosynthesis protein FlhA 4141005 3962359 Rfer_3707 Rhodoferax ferrireducens T118 flagellar biosynthesis protein FlhA YP_524938.1 4138924 D 338969 CDS YP_524939.1 89902468 3963242 4141002..4142441 1 NC_007908.1 GTP-binding signal recognition particle 4142441 3963242 Rfer_3708 Rhodoferax ferrireducens T118 GTP-binding signal recognition particle YP_524939.1 4141002 D 338969 CDS YP_524940.1 89902469 3963243 4142434..4143189 1 NC_007908.1 hypothetical protein 4143189 3963243 Rfer_3709 Rhodoferax ferrireducens T118 hypothetical protein YP_524940.1 4142434 D 338969 CDS YP_524941.1 89902470 3963244 4143189..4143905 1 NC_007908.1 sigma 28 (flagella/sporulation) 4143905 3963244 Rfer_3710 Rhodoferax ferrireducens T118 sigma 28 (flagella/sporulation) YP_524941.1 4143189 D 338969 CDS YP_524942.1 89902471 3963245 complement(4144009..4144392) 1 NC_007908.1 hypothetical protein 4144392 3963245 Rfer_3711 Rhodoferax ferrireducens T118 hypothetical protein YP_524942.1 4144009 R 338969 CDS YP_524943.1 89902472 3963246 complement(4144423..4144749) 1 NC_007908.1 anti-sigma-28 factor FlgM 4144749 3963246 Rfer_3712 Rhodoferax ferrireducens T118 anti-sigma-28 factor FlgM YP_524943.1 4144423 R 338969 CDS YP_524944.1 89902473 3963247 complement(4144846..4145586) 1 NC_007908.1 flageller protein FlgA 4145586 3963247 Rfer_3713 Rhodoferax ferrireducens T118 flageller protein FlgA YP_524944.1 4144846 R 338969 CDS YP_524945.1 89902474 3963248 4145768..4146220 1 NC_007908.1 flagellar basal-body rod protein FlgB 4146220 3963248 Rfer_3714 Rhodoferax ferrireducens T118 flagellar basal-body rod protein FlgB YP_524945.1 4145768 D 338969 CDS YP_524946.1 89902475 3963249 4146248..4146652 1 NC_007908.1 flagellar basal-body rod protein FlgC 4146652 3963249 Rfer_3715 Rhodoferax ferrireducens T118 flagellar basal-body rod protein FlgC YP_524946.1 4146248 D 338969 CDS YP_524947.1 89902476 3963250 4146672..4147343 1 NC_007908.1 flagellar hook capping protein 4147343 3963250 Rfer_3716 Rhodoferax ferrireducens T118 flagellar hook capping protein YP_524947.1 4146672 D 338969 CDS YP_524948.1 89902477 3963251 4147374..4148588 1 NC_007908.1 hypothetical protein 4148588 3963251 Rfer_3717 Rhodoferax ferrireducens T118 hypothetical protein YP_524948.1 4147374 D 338969 CDS YP_524949.1 89902478 3963252 4148629..4149369 1 NC_007908.1 flagellar basal-body rod FlgF 4149369 3963252 Rfer_3718 Rhodoferax ferrireducens T118 flagellar basal-body rod FlgF YP_524949.1 4148629 D 338969 CDS YP_524950.1 89902479 3963253 4149404..4150186 1 NC_007908.1 flagellar basal-body rod FlgG 4150186 3963253 Rfer_3719 Rhodoferax ferrireducens T118 flagellar basal-body rod FlgG YP_524950.1 4149404 D 338969 CDS YP_524951.1 89902480 3963254 4150195..4150926 1 NC_007908.1 flagellar L-ring protein 4150926 3963254 Rfer_3720 Rhodoferax ferrireducens T118 flagellar L-ring protein YP_524951.1 4150195 D 338969 CDS YP_524952.1 89902481 3963255 4150961..4152106 1 NC_007908.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4152106 flgI 3963255 flgI Rhodoferax ferrireducens T118 flagellar basal body P-ring protein YP_524952.1 4150961 D 338969 CDS YP_524953.1 89902482 3963256 4152106..4153032 1 NC_007908.1 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 4153032 3963256 Rfer_3722 Rhodoferax ferrireducens T118 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_524953.1 4152106 D 338969 CDS YP_524954.1 89902483 3963257 4153029..4154963 1 NC_007908.1 flagellar hook-associated protein 4154963 3963257 Rfer_3723 Rhodoferax ferrireducens T118 flagellar hook-associated protein YP_524954.1 4153029 D 338969 CDS YP_524955.1 89902484 3963258 4154990..4156222 1 NC_007908.1 flagellin-like protein 4156222 3963258 Rfer_3724 Rhodoferax ferrireducens T118 flagellin-like protein YP_524955.1 4154990 D 338969 CDS YP_524956.1 89902485 3963259 complement(4156271..4157716) 1 NC_007908.1 GntR family transcriptional regulator 4157716 3963259 Rfer_3725 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_524956.1 4156271 R 338969 CDS YP_524957.1 89902486 3963260 4157850..4158461 1 NC_007908.1 hypothetical protein 4158461 3963260 Rfer_3726 Rhodoferax ferrireducens T118 hypothetical protein YP_524957.1 4157850 D 338969 CDS YP_524958.1 89902487 3961076 4158484..4159215 1 NC_007908.1 aspartate racemase 4159215 3961076 Rfer_3727 Rhodoferax ferrireducens T118 aspartate racemase YP_524958.1 4158484 D 338969 CDS YP_524959.1 89902488 3961077 4159212..4160159 1 NC_007908.1 hypothetical protein 4160159 3961077 Rfer_3728 Rhodoferax ferrireducens T118 hypothetical protein YP_524959.1 4159212 D 338969 CDS YP_524960.1 89902489 3961078 4160156..4161418 1 NC_007908.1 class I/II aminotransferase 4161418 3961078 Rfer_3729 Rhodoferax ferrireducens T118 class I/II aminotransferase YP_524960.1 4160156 D 338969 CDS YP_524961.1 89902490 3961079 4161421..4162038 1 NC_007908.1 glutathione S-transferase-like protein 4162038 3961079 Rfer_3730 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_524961.1 4161421 D 338969 CDS YP_524962.1 89902491 3961080 4162064..4163020 1 NC_007908.1 phenazine biosynthesis PhzC/PhzF protein 4163020 3961080 Rfer_3731 Rhodoferax ferrireducens T118 phenazine biosynthesis PhzC/PhzF protein YP_524962.1 4162064 D 338969 CDS YP_524963.1 89902492 3961081 4163093..4163761 1 NC_007908.1 phosphoglycerate mutase 4163761 3961081 Rfer_3732 Rhodoferax ferrireducens T118 phosphoglycerate mutase YP_524963.1 4163093 D 338969 CDS YP_524964.1 89902493 3961082 complement(4163882..4164364) 1 NC_007908.1 hypothetical protein 4164364 3961082 Rfer_3733 Rhodoferax ferrireducens T118 hypothetical protein YP_524964.1 4163882 R 338969 CDS YP_524965.1 89902494 3961083 complement(4164440..4164775) 1 NC_007908.1 histone protein 4164775 3961083 Rfer_3734 Rhodoferax ferrireducens T118 histone protein YP_524965.1 4164440 R 338969 CDS YP_524966.1 89902495 3961084 complement(4165088..4167271) 1 NC_007908.1 twin-arginine translocation pathway signal protein 4167271 3961084 Rfer_3735 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524966.1 4165088 R 338969 CDS YP_524967.1 89902496 3961085 complement(4167554..4169737) 1 NC_007908.1 twin-arginine translocation pathway signal protein 4169737 3961085 Rfer_3736 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524967.1 4167554 R 338969 CDS YP_524968.1 89902497 3961086 complement(4169954..4170718) 1 NC_007908.1 haloacid dehalogenase-like protein hydrolase 4170718 3961086 Rfer_3737 Rhodoferax ferrireducens T118 haloacid dehalogenase-like protein hydrolase YP_524968.1 4169954 R 338969 CDS YP_524969.1 89902498 3961087 4170817..4171617 1 NC_007908.1 DeoR family transcriptional regulator 4171617 3961087 Rfer_3738 Rhodoferax ferrireducens T118 DeoR family transcriptional regulator YP_524969.1 4170817 D 338969 CDS YP_524970.1 89902499 3961088 complement(4171754..4172197) 1 NC_007908.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 4172197 3961088 Rfer_3739 Rhodoferax ferrireducens T118 cyanate hydratase YP_524970.1 4171754 R 338969 CDS YP_524971.1 89902500 3961089 complement(4172248..4173111) 1 NC_007908.1 ABC transporter-like protein 4173111 3961089 Rfer_3740 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_524971.1 4172248 R 338969 CDS YP_524972.1 89902501 3961090 complement(4173101..4173967) 1 NC_007908.1 nitrate transport permease 4173967 3961090 Rfer_3741 Rhodoferax ferrireducens T118 nitrate transport permease YP_524972.1 4173101 R 338969 CDS YP_524973.1 89902502 3961091 complement(4173969..4175372) 1 NC_007908.1 twin-arginine translocation pathway signal protein 4175372 3961091 Rfer_3742 Rhodoferax ferrireducens T118 twin-arginine translocation pathway signal protein YP_524973.1 4173969 R 338969 CDS YP_524974.1 89902503 3961092 complement(4175520..4176197) 1 NC_007908.1 two component LuxR family transcriptional regulator 4176197 3961092 Rfer_3743 Rhodoferax ferrireducens T118 two component LuxR family transcriptional regulator YP_524974.1 4175520 R 338969 CDS YP_524975.1 89902504 3961093 complement(4176199..4177437) 1 NC_007908.1 PAS/PAC sensor signal transduction histidine kinase 4177437 3961093 Rfer_3744 Rhodoferax ferrireducens T118 PAS/PAC sensor signal transduction histidine kinase YP_524975.1 4176199 R 338969 CDS YP_524976.1 89902505 3961094 complement(4177510..4178406) 1 NC_007908.1 hypothetical protein 4178406 3961094 Rfer_3745 Rhodoferax ferrireducens T118 hypothetical protein YP_524976.1 4177510 R 338969 CDS YP_524977.1 89902506 3961095 complement(4178452..4179312) 1 NC_007908.1 creatininase 4179312 3961095 Rfer_3746 Rhodoferax ferrireducens T118 creatininase YP_524977.1 4178452 R 338969 CDS YP_524978.1 89902507 3961096 complement(4179331..4179687) 1 NC_007908.1 alkylphosphonate utilization operon protein PhnA 4179687 3961096 Rfer_3747 Rhodoferax ferrireducens T118 alkylphosphonate utilization operon protein PhnA YP_524978.1 4179331 R 338969 CDS YP_524979.1 89902508 3961097 4179990..4180976 1 NC_007908.1 magnesium and cobalt transport protein CorA 4180976 3961097 Rfer_3748 Rhodoferax ferrireducens T118 magnesium and cobalt transport protein CorA YP_524979.1 4179990 D 338969 CDS YP_524980.1 89902509 3961098 complement(4181010..4182074) 1 NC_007908.1 putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase 4182074 3961098 Rfer_3749 Rhodoferax ferrireducens T118 putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase YP_524980.1 4181010 R 338969 CDS YP_524981.1 89902510 3961099 complement(4182071..4182754) 1 NC_007908.1 L-fuculose-phosphate aldolase 4182754 3961099 Rfer_3750 Rhodoferax ferrireducens T118 L-fuculose-phosphate aldolase YP_524981.1 4182071 R 338969 CDS YP_524982.1 89902511 3961100 complement(4182754..4183641) 1 NC_007908.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase 4183641 3961100 Rfer_3751 Rhodoferax ferrireducens T118 5'-methylthioadenosine phosphorylase YP_524982.1 4182754 R 338969 CDS YP_524983.1 89902512 3961101 complement(4183652..4185325) 1 NC_007908.1 AMP-dependent synthetase and ligase 4185325 3961101 Rfer_3752 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_524983.1 4183652 R 338969 CDS YP_524984.1 89902513 3961102 complement(4185504..4186919) 1 NC_007908.1 NAD(P) transhydrogenase subunit beta 4186919 3961102 Rfer_3753 Rhodoferax ferrireducens T118 NAD(P) transhydrogenase subunit beta YP_524984.1 4185504 R 338969 CDS YP_524985.1 89902514 3961103 complement(4186935..4188584) 1 NC_007908.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 4188584 pntA 3961103 pntA Rhodoferax ferrireducens T118 NAD(P) transhydrogenase subunit alpha YP_524985.1 4186935 R 338969 CDS YP_524986.1 89902515 3961104 4188773..4189246 1 NC_007908.1 NUDIX hydrolase 4189246 3961104 Rfer_3755 Rhodoferax ferrireducens T118 NUDIX hydrolase YP_524986.1 4188773 D 338969 CDS YP_524987.1 89902516 3961105 4189299..4190453 1 NC_007908.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4190453 mnmA 3961105 mnmA Rhodoferax ferrireducens T118 tRNA-specific 2-thiouridylase MnmA YP_524987.1 4189299 D 338969 CDS YP_524988.1 89902517 3961106 complement(4190537..4190827) 1 NC_007908.1 hypothetical protein 4190827 3961106 Rfer_3757 Rhodoferax ferrireducens T118 hypothetical protein YP_524988.1 4190537 R 338969 CDS YP_524989.1 89902518 3961107 complement(4190882..4191106) 1 NC_007908.1 hypothetical protein 4191106 3961107 Rfer_3758 Rhodoferax ferrireducens T118 hypothetical protein YP_524989.1 4190882 R 338969 CDS YP_524990.1 89902519 3961108 complement(4191154..4192440) 1 NC_007908.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4192440 3961108 Rfer_3759 Rhodoferax ferrireducens T118 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_524990.1 4191154 R 338969 CDS YP_524991.1 89902520 3961109 complement(4192474..4195803) 1 NC_007908.1 acriflavin resistance protein 4195803 3961109 Rfer_3760 Rhodoferax ferrireducens T118 acriflavin resistance protein YP_524991.1 4192474 R 338969 CDS YP_524992.1 89902521 3961110 complement(4195805..4196899) 1 NC_007908.1 secretion protein HlyD 4196899 3961110 Rfer_3761 Rhodoferax ferrireducens T118 secretion protein HlyD YP_524992.1 4195805 R 338969 CDS YP_524993.1 89902522 3961111 complement(4197041..4198870) 1 NC_007908.1 Type I secretion outer membrane protein TolC 4198870 3961111 Rfer_3762 Rhodoferax ferrireducens T118 Type I secretion outer membrane protein TolC YP_524993.1 4197041 R 338969 CDS YP_524994.1 89902523 3961112 4198980..4199672 1 NC_007908.1 hypothetical protein 4199672 3961112 Rfer_3763 Rhodoferax ferrireducens T118 hypothetical protein YP_524994.1 4198980 D 338969 CDS YP_524995.1 89902524 3961113 4199703..4201616 1 NC_007908.1 diguanylate cyclase/phosphodiesterase 4201616 3961113 Rfer_3764 Rhodoferax ferrireducens T118 diguanylate cyclase/phosphodiesterase YP_524995.1 4199703 D 338969 CDS YP_524996.1 89902525 3961114 4201613..4202593 1 NC_007908.1 lytic transglycosylase catalytic subunit 4202593 3961114 Rfer_3765 Rhodoferax ferrireducens T118 lytic transglycosylase catalytic subunit YP_524996.1 4201613 D 338969 CDS YP_524997.1 89902526 3962399 complement(4202622..4206122) 1 NC_007908.1 hemolysin-type calcium-binding protein 4206122 3962399 Rfer_3766 Rhodoferax ferrireducens T118 hemolysin-type calcium-binding protein YP_524997.1 4202622 R 338969 CDS YP_524998.1 89902527 3962400 complement(4206347..4206568) 1 NC_007908.1 hypothetical protein 4206568 3962400 Rfer_3767 Rhodoferax ferrireducens T118 hypothetical protein YP_524998.1 4206347 R 338969 CDS YP_524999.1 89902528 3962401 complement(4206565..4207260) 1 NC_007908.1 LuxR family transcriptional regulator 4207260 3962401 Rfer_3768 Rhodoferax ferrireducens T118 LuxR family transcriptional regulator YP_524999.1 4206565 R 338969 CDS YP_525000.1 89902529 3962402 complement(4207257..4208672) 1 NC_007908.1 Type I secretion membrane fusion protein HlyD 4208672 3962402 Rfer_3769 Rhodoferax ferrireducens T118 Type I secretion membrane fusion protein HlyD YP_525000.1 4207257 R 338969 CDS YP_525001.1 89902530 3962403 complement(4208672..4210831) 1 NC_007908.1 ABC transporter-like protein 4210831 3962403 Rfer_3770 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525001.1 4208672 R 338969 CDS YP_525002.1 89902531 3962404 complement(4211244..4212062) 1 NC_007908.1 integral membrane protein 4212062 3962404 Rfer_3771 Rhodoferax ferrireducens T118 integral membrane protein YP_525002.1 4211244 R 338969 CDS YP_525003.1 89902532 3962405 complement(4212095..4212598) 1 NC_007908.1 single-strand-binding protein 4212598 3962405 Rfer_3772 Rhodoferax ferrireducens T118 single-strand-binding protein YP_525003.1 4212095 R 338969 CDS YP_525004.1 89902533 3962406 complement(4212653..4213903) 1 NC_007908.1 major facilitator transporter 4213903 3962406 Rfer_3773 Rhodoferax ferrireducens T118 major facilitator transporter YP_525004.1 4212653 R 338969 CDS YP_525005.1 89902534 3962407 4214052..4217210 1 NC_007908.1 excinuclease ABC subunit A 4217210 3962407 Rfer_3774 Rhodoferax ferrireducens T118 excinuclease ABC subunit A YP_525005.1 4214052 D 338969 CDS YP_525006.1 89902535 3962408 complement(4217231..4218925) 1 NC_007908.1 AMP-dependent synthetase and ligase 4218925 3962408 Rfer_3775 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_525006.1 4217231 R 338969 CDS YP_525007.1 89902536 3962409 complement(4219168..4220031) 1 NC_007908.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 4220031 pyrF 3962409 pyrF Rhodoferax ferrireducens T118 orotidine 5'-phosphate decarboxylase YP_525007.1 4219168 R 338969 CDS YP_525008.1 89902537 3962410 complement(4220151..4222319) 1 NC_007908.1 DNA polymerase III subunit epsilon 4222319 3962410 Rfer_3777 Rhodoferax ferrireducens T118 DNA polymerase III subunit epsilon YP_525008.1 4220151 R 338969 CDS YP_525009.1 89902538 3962411 complement(4222316..4222690) 1 NC_007908.1 response regulator receiver domain-containing protein 4222690 3962411 Rfer_3778 Rhodoferax ferrireducens T118 response regulator receiver domain-containing protein YP_525009.1 4222316 R 338969 CDS YP_525010.1 89902539 3962412 complement(4222687..4225449) 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 4225449 3962412 Rfer_3779 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_525010.1 4222687 R 338969 CDS YP_525011.1 89902540 3962413 complement(4225452..4225664) 1 NC_007908.1 hypothetical protein 4225664 3962413 Rfer_3780 Rhodoferax ferrireducens T118 hypothetical protein YP_525011.1 4225452 R 338969 CDS YP_525012.1 89902541 3962414 4225961..4226269 1 NC_007908.1 hypothetical protein 4226269 3962414 Rfer_3781 Rhodoferax ferrireducens T118 hypothetical protein YP_525012.1 4225961 D 338969 CDS YP_525013.1 89902542 3962415 4226266..4227957 1 NC_007908.1 SSS family solute/sodium (Na+) symporter 4227957 3962415 Rfer_3782 Rhodoferax ferrireducens T118 SSS family solute/sodium (Na+) symporter YP_525013.1 4226266 D 338969 CDS YP_525014.1 89902543 3962416 4228363..4230174 1 NC_007908.1 cyclic nucleotide-binding domain-containing protein 4230174 3962416 Rfer_3783 Rhodoferax ferrireducens T118 cyclic nucleotide-binding domain-containing protein YP_525014.1 4228363 D 338969 CDS YP_525015.1 89902544 3962417 4230240..4230728 1 NC_007908.1 GCN5-like protein N-acetyltransferase 4230728 3962417 Rfer_3784 Rhodoferax ferrireducens T118 GCN5-like protein N-acetyltransferase YP_525015.1 4230240 D 338969 CDS YP_525016.1 89902545 3962418 complement(4230777..4231328) 1 NC_007908.1 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 4231328 3962418 Rfer_3785 Rhodoferax ferrireducens T118 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_525016.1 4230777 R 338969 CDS YP_525017.1 89902546 3962913 complement(4231417..4231686) 1 NC_007908.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 4231686 rpsQ 3962913 rpsQ Rhodoferax ferrireducens T118 30S ribosomal protein S17 YP_525017.1 4231417 R 338969 CDS YP_525018.1 89902547 3962914 complement(4231697..4231903) 1 NC_007908.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 4231903 3962914 Rfer_3787 Rhodoferax ferrireducens T118 50S ribosomal protein L29 YP_525018.1 4231697 R 338969 CDS YP_525019.1 89902548 3962915 complement(4231919..4232335) 1 NC_007908.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 4232335 rplP 3962915 rplP Rhodoferax ferrireducens T118 50S ribosomal protein L16 YP_525019.1 4231919 R 338969 CDS YP_525020.1 89902549 3962916 complement(4232338..4233234) 1 NC_007908.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 4233234 rpsC 3962916 rpsC Rhodoferax ferrireducens T118 30S ribosomal protein S3 YP_525020.1 4232338 R 338969 CDS YP_525021.1 89902550 3962917 complement(4233251..4233580) 1 NC_007908.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 4233580 rplV 3962917 rplV Rhodoferax ferrireducens T118 50S ribosomal protein L22 YP_525021.1 4233251 R 338969 CDS YP_525022.1 89902551 3962918 complement(4233591..4233869) 1 NC_007908.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 4233869 rpsS 3962918 rpsS Rhodoferax ferrireducens T118 30S ribosomal protein S19 YP_525022.1 4233591 R 338969 CDS YP_525023.1 89902552 3962919 complement(4233881..4234705) 1 NC_007908.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 4234705 rplB 3962919 rplB Rhodoferax ferrireducens T118 50S ribosomal protein L2 YP_525023.1 4233881 R 338969 CDS YP_525024.1 89902553 3962920 complement(4234708..4235034) 1 NC_007908.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 4235034 rplW 3962920 rplW Rhodoferax ferrireducens T118 50S ribosomal protein L23 YP_525024.1 4234708 R 338969 CDS YP_525025.1 89902554 3962921 complement(4235031..4235651) 1 NC_007908.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 4235651 rplD 3962921 rplD Rhodoferax ferrireducens T118 50S ribosomal protein L4 YP_525025.1 4235031 R 338969 CDS YP_525026.1 89902555 3962922 complement(4235651..4236337) 1 NC_007908.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 4236337 rplC 3962922 rplC Rhodoferax ferrireducens T118 50S ribosomal protein L3 YP_525026.1 4235651 R 338969 CDS YP_525027.1 89902556 3962923 complement(4236536..4236850) 1 NC_007908.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 4236850 rpsJ 3962923 rpsJ Rhodoferax ferrireducens T118 30S ribosomal protein S10 YP_525027.1 4236536 R 338969 CDS YP_525028.1 89902557 3962924 complement(4236859..4238049) 1 NC_007908.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4238049 3962924 Rfer_3797 Rhodoferax ferrireducens T118 elongation factor Tu YP_525028.1 4236859 R 338969 CDS YP_525029.1 89902558 3962925 complement(4238230..4240332) 1 NC_007908.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4240332 3962925 Rfer_3798 Rhodoferax ferrireducens T118 elongation factor G YP_525029.1 4238230 R 338969 CDS YP_525030.1 89902559 3962926 complement(4240496..4240969) 1 NC_007908.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 4240969 3962926 Rfer_3799 Rhodoferax ferrireducens T118 30S ribosomal protein S7 YP_525030.1 4240496 R 338969 CDS YP_525031.1 89902560 3962927 complement(4241119..4241496) 1 NC_007908.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 4241496 rpsL 3962927 rpsL Rhodoferax ferrireducens T118 30S ribosomal protein S12 YP_525031.1 4241119 R 338969 CDS YP_525032.1 89902561 3962928 complement(4241685..4242869) 1 NC_007908.1 Serine-type D-Ala-D-Ala carboxypeptidase 4242869 3962928 Rfer_3801 Rhodoferax ferrireducens T118 Serine-type D-Ala-D-Ala carboxypeptidase YP_525032.1 4241685 R 338969 CDS YP_525033.1 89902562 3962929 complement(4242984..4243367) 1 NC_007908.1 ferredoxin-like protein 4243367 3962929 Rfer_3802 Rhodoferax ferrireducens T118 ferredoxin-like protein YP_525033.1 4242984 R 338969 CDS YP_525034.1 89902563 3962930 complement(4243378..4244472) 1 NC_007908.1 VanZ-like protein 4244472 3962930 Rfer_3803 Rhodoferax ferrireducens T118 VanZ-like protein YP_525034.1 4243378 R 338969 CDS YP_525035.1 89902564 3962931 complement(4244489..4244917) 1 NC_007908.1 hypothetical protein 4244917 3962931 Rfer_3804 Rhodoferax ferrireducens T118 hypothetical protein YP_525035.1 4244489 R 338969 CDS YP_525036.1 89902565 3960060 4245200..4246216 1 NC_007908.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4246216 3960060 Rfer_3805 Rhodoferax ferrireducens T118 delta-aminolevulinic acid dehydratase YP_525036.1 4245200 D 338969 CDS YP_525037.1 89902566 3960061 4246272..4247510 1 NC_007908.1 Mg2+ transporter protein, CorA-like protein 4247510 3960061 Rfer_3806 Rhodoferax ferrireducens T118 Mg2+ transporter protein, CorA-like protein YP_525037.1 4246272 D 338969 CDS YP_525038.1 89902567 3960062 4247635..4248402 1 NC_007908.1 extracellular solute-binding protein 4248402 3960062 Rfer_3807 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_525038.1 4247635 D 338969 CDS YP_525039.1 89902568 3960063 4248424..4249191 1 NC_007908.1 amino acid ABC transporter permease 4249191 3960063 Rfer_3808 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_525039.1 4248424 D 338969 CDS YP_525040.1 89902569 3960064 4249178..4249900 1 NC_007908.1 ABC transporter-like protein 4249900 3960064 Rfer_3809 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525040.1 4249178 D 338969 CDS YP_525041.1 89902570 3960065 complement(4249926..4250618) 1 NC_007908.1 carboxymethylenebutenolidase 4250618 3960065 Rfer_3810 Rhodoferax ferrireducens T118 carboxymethylenebutenolidase YP_525041.1 4249926 R 338969 CDS YP_525042.1 89902571 3960066 4250838..4251419 1 NC_007908.1 hypothetical protein 4251419 3960066 Rfer_3811 Rhodoferax ferrireducens T118 hypothetical protein YP_525042.1 4250838 D 338969 CDS YP_525043.1 89902572 3960067 4251486..4252172 1 NC_007908.1 activator of osmoprotectant transporter 4252172 3960067 Rfer_3812 Rhodoferax ferrireducens T118 activator of osmoprotectant transporter YP_525043.1 4251486 D 338969 CDS YP_525044.1 89902573 3960068 4252242..4252862 1 NC_007908.1 multiple antibiotic resistance (MarC)-like proteins 4252862 3960068 Rfer_3813 Rhodoferax ferrireducens T118 multiple antibiotic resistance (MarC)-like proteins YP_525044.1 4252242 D 338969 CDS YP_525045.1 89902574 3960069 complement(4252867..4259163) 1 NC_007908.1 excinuclease ABC subunit A 4259163 3960069 Rfer_3814 Rhodoferax ferrireducens T118 excinuclease ABC subunit A YP_525045.1 4252867 R 338969 CDS YP_525046.1 89902575 3960070 4259340..4260446 1 NC_007908.1 extracellular ligand-binding receptor 4260446 3960070 Rfer_3815 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_525046.1 4259340 D 338969 CDS YP_525047.1 89902576 3960071 complement(4260453..4261085) 1 NC_007908.1 DSBA oxidoreductase 4261085 3960071 Rfer_3816 Rhodoferax ferrireducens T118 DSBA oxidoreductase YP_525047.1 4260453 R 338969 CDS YP_525048.1 89902577 3960072 complement(4261295..4261690) 1 NC_007908.1 hypothetical protein 4261690 3960072 Rfer_3817 Rhodoferax ferrireducens T118 hypothetical protein YP_525048.1 4261295 R 338969 CDS YP_525049.1 89902578 3960074 4262498..4263010 1 NC_007908.1 outer membrane chaperone Skp 4263010 3960074 Rfer_3819 Rhodoferax ferrireducens T118 outer membrane chaperone Skp YP_525049.1 4262498 D 338969 CDS YP_525050.1 89902579 3960075 4263031..4263696 1 NC_007908.1 two component transcriptional regulator 4263696 3960075 Rfer_3820 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_525050.1 4263031 D 338969 CDS YP_525051.1 89902580 3960076 4263693..4265027 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 4265027 3960076 Rfer_3821 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_525051.1 4263693 D 338969 CDS YP_525052.1 89902581 3960077 4265158..4266663 1 NC_007908.1 peptidase S1C, Do 4266663 3960077 Rfer_3822 Rhodoferax ferrireducens T118 peptidase S1C, Do YP_525052.1 4265158 D 338969 CDS YP_525053.1 89902582 3960078 complement(4266681..4267427) 1 NC_007908.1 YbaK/prolyl-tRNA synthetase associated protein 4267427 3960078 Rfer_3823 Rhodoferax ferrireducens T118 YbaK/prolyl-tRNA synthetase associated protein YP_525053.1 4266681 R 338969 CDS YP_525054.1 89902583 3960079 complement(4267438..4268346) 1 NC_007908.1 pyruvate carboxyltransferase 4268346 3960079 Rfer_3824 Rhodoferax ferrireducens T118 pyruvate carboxyltransferase YP_525054.1 4267438 R 338969 CDS YP_525055.1 89902584 3961427 complement(4268395..4268688) 1 NC_007908.1 hypothetical protein 4268688 3961427 Rfer_3825 Rhodoferax ferrireducens T118 hypothetical protein YP_525055.1 4268395 R 338969 CDS YP_525056.1 89902585 3961428 complement(4268927..4270657) 1 NC_007908.1 ABC transporter-like protein 4270657 3961428 Rfer_3826 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525056.1 4268927 R 338969 CDS YP_525057.1 89902586 3961429 4270894..4271370 1 NC_007908.1 hypothetical protein 4271370 3961429 Rfer_3827 Rhodoferax ferrireducens T118 hypothetical protein YP_525057.1 4270894 D 338969 CDS YP_525058.1 89902587 3961430 complement(4271399..4272586) 1 NC_007908.1 radical SAM family protein 4272586 3961430 Rfer_3828 Rhodoferax ferrireducens T118 radical SAM family protein YP_525058.1 4271399 R 338969 CDS YP_525059.1 89902588 3961431 complement(4272788..4273708) 1 NC_007908.1 D-isomer specific 2-hydroxyacid dehydrogenase 4273708 3961431 Rfer_3829 Rhodoferax ferrireducens T118 D-isomer specific 2-hydroxyacid dehydrogenase YP_525059.1 4272788 R 338969 CDS YP_525060.1 89902589 3961432 complement(4273722..4275746) 1 NC_007908.1 carbamoyl-phosphate synthase L chain, ATP-binding 4275746 3961432 Rfer_3830 Rhodoferax ferrireducens T118 carbamoyl-phosphate synthase L chain, ATP-binding YP_525060.1 4273722 R 338969 CDS YP_525061.1 89902590 3961433 complement(4275769..4276545) 1 NC_007908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4276545 3961433 Rfer_3831 Rhodoferax ferrireducens T118 enoyl-CoA hydratase YP_525061.1 4275769 R 338969 CDS YP_525062.1 89902591 3961434 complement(4276604..4278226) 1 NC_007908.1 propionyl-CoA carboxylase 4278226 3961434 Rfer_3832 Rhodoferax ferrireducens T118 propionyl-CoA carboxylase YP_525062.1 4276604 R 338969 CDS YP_525063.1 89902592 3961435 complement(4278237..4280042) 1 NC_007908.1 activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 4280042 3961435 Rfer_3833 Rhodoferax ferrireducens T118 AMP-binding domain-containing protein YP_525063.1 4278237 R 338969 CDS YP_525064.1 89902593 3961436 4280097..4281158 1 NC_007908.1 AraC family transcriptional regulator 4281158 3961436 Rfer_3834 Rhodoferax ferrireducens T118 AraC family transcriptional regulator YP_525064.1 4280097 D 338969 CDS YP_525065.1 89902594 3961437 complement(4281356..4281691) 1 NC_007908.1 hypothetical protein 4281691 3961437 Rfer_3835 Rhodoferax ferrireducens T118 hypothetical protein YP_525065.1 4281356 R 338969 CDS YP_525066.1 89902595 3961438 complement(4281780..4282202) 1 NC_007908.1 rhodanese-like protein 4282202 3961438 Rfer_3836 Rhodoferax ferrireducens T118 rhodanese-like protein YP_525066.1 4281780 R 338969 CDS YP_525067.1 89902596 3961439 complement(4282519..4283880) 1 NC_007908.1 hypothetical protein 4283880 3961439 Rfer_3837 Rhodoferax ferrireducens T118 hypothetical protein YP_525067.1 4282519 R 338969 CDS YP_525068.1 89902597 3961440 complement(4284389..4285519) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 4285519 3961440 Rfer_3838 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_525068.1 4284389 R 338969 CDS YP_525069.1 89902598 3961441 complement(4285603..4286796) 1 NC_007908.1 Acetyl-CoA C-acetyltransferase 4286796 3961441 Rfer_3839 Rhodoferax ferrireducens T118 Acetyl-CoA C-acetyltransferase YP_525069.1 4285603 R 338969 CDS YP_525070.1 89902599 3961442 complement(4286873..4288720) 1 NC_007908.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4288720 aceK 3961442 aceK Rhodoferax ferrireducens T118 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_525070.1 4286873 R 338969 CDS YP_525071.1 89902600 3961443 complement(4288780..4289451) 1 NC_007908.1 carbonate dehydratase 4289451 3961443 Rfer_3841 Rhodoferax ferrireducens T118 carbonate dehydratase YP_525071.1 4288780 R 338969 CDS YP_525072.1 89902601 3961444 complement(4289465..4290643) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 4290643 3961444 Rfer_3842 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_525072.1 4289465 R 338969 CDS YP_525073.1 89902602 3961445 complement(4290624..4291088) 1 NC_007908.1 MerR family transcriptional regulator 4291088 3961445 Rfer_3843 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_525073.1 4290624 R 338969 CDS YP_525074.1 89902603 3961446 4291204..4292304 1 NC_007908.1 beta-lactamase-like protein 4292304 3961446 Rfer_3844 Rhodoferax ferrireducens T118 beta-lactamase-like protein YP_525074.1 4291204 D 338969 CDS YP_525075.1 89902604 3961447 complement(4292333..4293658) 1 NC_007908.1 anaerobic c4-dicarboxylate membrane transporter family protein 4293658 3961447 Rfer_3845 Rhodoferax ferrireducens T118 anaerobic c4-dicarboxylate membrane transporter family protein YP_525075.1 4292333 R 338969 CDS YP_525076.1 89902605 3961448 complement(4293705..4295108) 1 NC_007908.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4295108 aspA 3961448 aspA Rhodoferax ferrireducens T118 aspartate ammonia-lyase YP_525076.1 4293705 R 338969 CDS YP_525077.1 89902606 3961449 complement(4295425..4296498) 1 NC_007908.1 hypothetical protein 4296498 3961449 Rfer_3847 Rhodoferax ferrireducens T118 hypothetical protein YP_525077.1 4295425 R 338969 CDS YP_525078.1 89902607 3961450 4296824..4299040 1 NC_007908.1 molybdopterin oxidoreductase 4299040 3961450 Rfer_3848 Rhodoferax ferrireducens T118 molybdopterin oxidoreductase YP_525078.1 4296824 D 338969 CDS YP_525079.1 89902608 3961451 4299125..4299715 1 NC_007908.1 putative sigma 54 modulation protein/ribosomal protein S30EA 4299715 3961451 Rfer_3849 Rhodoferax ferrireducens T118 putative sigma 54 modulation protein/ribosomal protein S30EA YP_525079.1 4299125 D 338969 CDS YP_525080.1 89902609 3961452 4299749..4300210 1 NC_007908.1 signal-transduction protein 4300210 3961452 Rfer_3850 Rhodoferax ferrireducens T118 signal-transduction protein YP_525080.1 4299749 D 338969 CDS YP_525081.1 89902610 3961453 complement(4300235..4301374) 1 NC_007908.1 putative capsule biosynthesis protein 4301374 3961453 Rfer_3851 Rhodoferax ferrireducens T118 putative capsule biosynthesis protein YP_525081.1 4300235 R 338969 CDS YP_525082.1 89902611 3961454 complement(4301359..4302789) 1 NC_007908.1 hypothetical protein 4302789 3961454 Rfer_3852 Rhodoferax ferrireducens T118 hypothetical protein YP_525082.1 4301359 R 338969 CDS YP_525083.1 89902612 3961455 complement(4302793..4303209) 1 NC_007908.1 hypothetical protein 4303209 3961455 Rfer_3853 Rhodoferax ferrireducens T118 hypothetical protein YP_525083.1 4302793 R 338969 CDS YP_525084.1 89902613 3961456 complement(4303303..4303773) 1 NC_007908.1 HoxW protein 4303773 3961456 Rfer_3854 Rhodoferax ferrireducens T118 HoxW protein YP_525084.1 4303303 R 338969 CDS YP_525085.1 89902614 3961457 complement(4303770..4305293) 1 NC_007908.1 nickel-dependent hydrogenase large subunit 4305293 3961457 Rfer_3855 Rhodoferax ferrireducens T118 nickel-dependent hydrogenase large subunit YP_525085.1 4303770 R 338969 CDS YP_525086.1 89902615 3961458 complement(4305314..4305880) 1 NC_007908.1 NADH ubiquinone oxidoreductase, 20 kDa subunit 4305880 3961458 Rfer_3856 Rhodoferax ferrireducens T118 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_525086.1 4305314 R 338969 CDS YP_525087.1 89902616 3961459 complement(4305877..4306599) 1 NC_007908.1 hydrogen dehydrogenase 4306599 3961459 Rfer_3857 Rhodoferax ferrireducens T118 hydrogen dehydrogenase YP_525087.1 4305877 R 338969 CDS YP_525088.1 89902617 3961460 complement(4306596..4308407) 1 NC_007908.1 respiratory-chain NADH dehydrogenase domain-containing protein 4308407 3961460 Rfer_3858 Rhodoferax ferrireducens T118 respiratory-chain NADH dehydrogenase domain-containing protein YP_525088.1 4306596 R 338969 CDS YP_525089.1 89902618 3961461 complement(4308459..4309430) 1 NC_007908.1 methionyl-tRNA formyltransferase 4309430 3961461 Rfer_3859 Rhodoferax ferrireducens T118 methionyl-tRNA formyltransferase YP_525089.1 4308459 R 338969 CDS YP_525090.1 89902619 3961462 complement(4309427..4309936) 1 NC_007908.1 peptide deformylase 4309936 3961462 Rfer_3860 Rhodoferax ferrireducens T118 peptide deformylase YP_525090.1 4309427 R 338969 CDS YP_525091.1 89902620 3961463 4310236..4311465 1 NC_007908.1 peptidoglycan-binding LysM 4311465 3961463 Rfer_3861 Rhodoferax ferrireducens T118 peptidoglycan-binding LysM YP_525091.1 4310236 D 338969 CDS YP_525092.1 89902621 3961464 4311509..4312738 1 NC_007908.1 DNA processing protein DprA 4312738 3961464 Rfer_3862 Rhodoferax ferrireducens T118 DNA processing protein DprA YP_525092.1 4311509 D 338969 CDS YP_525093.1 89902622 3961465 4312826..4313338 1 NC_007908.1 hypothetical protein 4313338 3961465 Rfer_3863 Rhodoferax ferrireducens T118 hypothetical protein YP_525093.1 4312826 D 338969 CDS YP_525094.1 89902623 3961466 complement(4313335..4315707) 1 NC_007908.1 hypothetical protein 4315707 3961466 Rfer_3864 Rhodoferax ferrireducens T118 hypothetical protein YP_525094.1 4313335 R 338969 CDS YP_525095.1 89902624 3961467 complement(4315792..4316745) 1 NC_007908.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 4316745 secF 3961467 secF Rhodoferax ferrireducens T118 preprotein translocase subunit SecF YP_525095.1 4315792 R 338969 CDS YP_525096.1 89902625 3961468 complement(4316769..4318649) 1 NC_007908.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 4318649 secD 3961468 secD Rhodoferax ferrireducens T118 preprotein translocase subunit SecD YP_525096.1 4316769 R 338969 CDS YP_525097.1 89902626 3961469 complement(4318680..4318955) 1 NC_007908.1 preprotein translocase subunit YajC 4318955 3961469 Rfer_3867 Rhodoferax ferrireducens T118 preprotein translocase subunit YajC YP_525097.1 4318680 R 338969 CDS YP_525098.1 89902627 3961470 complement(4319084..4322740) 1 NC_007908.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 4322740 3961470 Rfer_3868 Rhodoferax ferrireducens T118 indolepyruvate ferredoxin oxidoreductase YP_525098.1 4319084 R 338969 CDS YP_525099.1 89902628 3961471 complement(4322931..4323551) 1 NC_007908.1 hemolysin III family channel protein 4323551 3961471 Rfer_3869 Rhodoferax ferrireducens T118 hemolysin III family channel protein YP_525099.1 4322931 R 338969 CDS YP_525100.1 89902629 3961472 complement(4323817..4324140) 1 NC_007908.1 ethyl tert-butyl ether degradation EthD 4324140 3961472 Rfer_3870 Rhodoferax ferrireducens T118 ethyl tert-butyl ether degradation EthD YP_525100.1 4323817 R 338969 CDS YP_525101.1 89902630 3961473 complement(4324233..4324586) 1 NC_007908.1 MerR family transcriptional regulator 4324586 3961473 Rfer_3871 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_525101.1 4324233 R 338969 CDS YP_525102.1 89902631 3961474 complement(4324697..4325596) 1 NC_007908.1 hypothetical protein 4325596 3961474 Rfer_3872 Rhodoferax ferrireducens T118 hypothetical protein YP_525102.1 4324697 R 338969 CDS YP_525103.1 89902632 3961475 4325632..4326018 1 NC_007908.1 hypothetical protein 4326018 3961475 Rfer_3873 Rhodoferax ferrireducens T118 hypothetical protein YP_525103.1 4325632 D 338969 CDS YP_525104.1 89902633 3961476 4326055..4326648 1 NC_007908.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4326648 3961476 Rfer_3874 Rhodoferax ferrireducens T118 phosphoheptose isomerase YP_525104.1 4326055 D 338969 CDS YP_525105.1 89902634 3961477 4326645..4327289 1 NC_007908.1 transport protein 4327289 3961477 Rfer_3875 Rhodoferax ferrireducens T118 transport protein YP_525105.1 4326645 D 338969 CDS YP_525106.1 89902635 3961478 complement(4327333..4328247) 1 NC_007908.1 6-phosphogluconate dehydrogenase 4328247 3961478 Rfer_3876 Rhodoferax ferrireducens T118 6-phosphogluconate dehydrogenase YP_525106.1 4327333 R 338969 CDS YP_525107.1 89902636 3961479 complement(4328256..4329392) 1 NC_007908.1 twitching motility protein 4329392 3961479 Rfer_3877 Rhodoferax ferrireducens T118 twitching motility protein YP_525107.1 4328256 R 338969 CDS YP_525108.1 89902637 3961480 complement(4329465..4330508) 1 NC_007908.1 twitching motility protein 4330508 3961480 Rfer_3878 Rhodoferax ferrireducens T118 twitching motility protein YP_525108.1 4329465 R 338969 CDS YP_525109.1 89902638 3961481 4330544..4331263 1 NC_007908.1 hypothetical protein 4331263 3961481 Rfer_3879 Rhodoferax ferrireducens T118 hypothetical protein YP_525109.1 4330544 D 338969 CDS YP_525110.1 89902639 3961482 complement(4331325..4332506) 1 NC_007908.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 4332506 3961482 Rfer_3880 Rhodoferax ferrireducens T118 S-adenosylmethionine synthetase YP_525110.1 4331325 R 338969 CDS YP_525111.1 89902640 3961483 4332698..4333528 1 NC_007908.1 putative acyltransferase 4333528 3961483 Rfer_3881 Rhodoferax ferrireducens T118 putative acyltransferase YP_525111.1 4332698 D 338969 CDS YP_525112.1 89902641 3961484 complement(4333606..4334031) 1 NC_007908.1 AsnC family transcriptional regulator 4334031 3961484 Rfer_3882 Rhodoferax ferrireducens T118 AsnC family transcriptional regulator YP_525112.1 4333606 R 338969 CDS YP_525113.1 89902642 3961504 4334157..4335266 1 NC_007908.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 4335266 3961504 Rfer_3883 Rhodoferax ferrireducens T118 ornithine cyclodeaminase YP_525113.1 4334157 D 338969 CDS YP_525114.1 89902643 3961505 4335263..4336228 1 NC_007908.1 arginase 4336228 3961505 Rfer_3884 Rhodoferax ferrireducens T118 arginase YP_525114.1 4335263 D 338969 CDS YP_525115.1 89902644 3961506 complement(4336378..4337199) 1 NC_007908.1 hypothetical protein 4337199 3961506 Rfer_3885 Rhodoferax ferrireducens T118 hypothetical protein YP_525115.1 4336378 R 338969 CDS YP_525116.1 89902645 3961507 complement(4337202..4337615) 1 NC_007908.1 hypothetical protein 4337615 3961507 Rfer_3886 Rhodoferax ferrireducens T118 hypothetical protein YP_525116.1 4337202 R 338969 CDS YP_525117.1 89902646 3961508 complement(4337715..4338470) 1 NC_007908.1 cobalamin B12-binding 4338470 3961508 Rfer_3887 Rhodoferax ferrireducens T118 cobalamin B12-binding YP_525117.1 4337715 R 338969 CDS YP_525118.1 89902647 3961509 complement(4338463..4340019) 1 NC_007908.1 D-lysine 5,6-aminomutase subunit alpha 4340019 3961509 Rfer_3888 Rhodoferax ferrireducens T118 D-lysine 5,6-aminomutase subunit alpha YP_525118.1 4338463 R 338969 CDS YP_525119.1 89902648 3961510 complement(4340016..4341092) 1 NC_007908.1 hypothetical protein 4341092 3961510 Rfer_3889 Rhodoferax ferrireducens T118 hypothetical protein YP_525119.1 4340016 R 338969 CDS YP_525120.1 89902649 3961511 complement(4341115..4342158) 1 NC_007908.1 zinc-binding alcohol dehydrogenase 4342158 3961511 Rfer_3890 Rhodoferax ferrireducens T118 zinc-binding alcohol dehydrogenase YP_525120.1 4341115 R 338969 CDS YP_525121.1 89902650 3961512 complement(4342219..4343400) 1 NC_007908.1 hypothetical protein 4343400 3961512 Rfer_3891 Rhodoferax ferrireducens T118 hypothetical protein YP_525121.1 4342219 R 338969 CDS YP_525122.1 89902651 3961513 4343569..4344012 1 NC_007908.1 AsnC family transcriptional regulator 4344012 3961513 Rfer_3892 Rhodoferax ferrireducens T118 AsnC family transcriptional regulator YP_525122.1 4343569 D 338969 CDS YP_525123.1 89902652 3961514 complement(4344021..4346582) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4346582 3961514 Rfer_3893 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_525123.1 4344021 R 338969 CDS YP_525124.1 89902653 3961515 complement(4346767..4347708) 1 NC_007908.1 hypothetical protein 4347708 3961515 Rfer_3894 Rhodoferax ferrireducens T118 hypothetical protein YP_525124.1 4346767 R 338969 CDS YP_525125.1 89902654 3961516 4348051..4350192 1 NC_007908.1 Alpha-glucan phosphorylase 4350192 3961516 Rfer_3895 Rhodoferax ferrireducens T118 Alpha-glucan phosphorylase YP_525125.1 4348051 D 338969 CDS YP_525126.1 89902655 3961517 4350281..4350835 1 NC_007908.1 hypothetical protein 4350835 3961517 Rfer_3896 Rhodoferax ferrireducens T118 hypothetical protein YP_525126.1 4350281 D 338969 CDS YP_525127.1 89902656 3961518 complement(4350975..4351616) 1 NC_007908.1 TetR family transcriptional regulator 4351616 3961518 Rfer_3897 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_525127.1 4350975 R 338969 CDS YP_525128.1 89902657 3961519 4351729..4353390 1 NC_007908.1 AMP-dependent synthetase and ligase 4353390 3961519 Rfer_3898 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_525128.1 4351729 D 338969 CDS YP_525129.1 89902658 3961520 4353383..4355215 1 NC_007908.1 propionyl-CoA carboxylase 4355215 3961520 Rfer_3899 Rhodoferax ferrireducens T118 propionyl-CoA carboxylase YP_525129.1 4353383 D 338969 CDS YP_525130.1 89902659 3961521 4355281..4356261 1 NC_007908.1 hypothetical protein 4356261 3961521 Rfer_3900 Rhodoferax ferrireducens T118 hypothetical protein YP_525130.1 4355281 D 338969 CDS YP_525131.1 89902660 3961522 4356346..4358823 1 NC_007908.1 CRISPR-associated helicase Cas3 4358823 3961522 Rfer_3901 Rhodoferax ferrireducens T118 CRISPR-associated helicase Cas3 YP_525131.1 4356346 D 338969 CDS YP_525132.1 89902661 3961523 4358816..4359529 1 NC_007908.1 CRISPR-associated Cas5d family protein 4359529 3961523 Rfer_3902 Rhodoferax ferrireducens T118 CRISPR-associated Cas5d family protein YP_525132.1 4358816 D 338969 CDS YP_525133.1 89902662 3961543 4359531..4361441 1 NC_007908.1 CRISPR-associated Csd1 family protein 4361441 3961543 Rfer_3903 Rhodoferax ferrireducens T118 CRISPR-associated Csd1 family protein YP_525133.1 4359531 D 338969 CDS YP_525134.1 89902663 3961544 4361457..4362341 1 NC_007908.1 CRISPR-associated Csh2 family protein 4362341 3961544 Rfer_3904 Rhodoferax ferrireducens T118 CRISPR-associated Csh2 family protein YP_525134.1 4361457 D 338969 CDS YP_525135.1 89902664 3961545 4362373..4363227 1 NC_007908.1 prophage antirepressor 4363227 3961545 Rfer_3905 Rhodoferax ferrireducens T118 prophage antirepressor YP_525135.1 4362373 D 338969 CDS YP_525136.1 89902665 3961546 4363252..4363890 1 NC_007908.1 CRISPR-associated Cas4 family protein 4363890 3961546 Rfer_3906 Rhodoferax ferrireducens T118 CRISPR-associated Cas4 family protein YP_525136.1 4363252 D 338969 CDS YP_525137.1 89902666 3961547 4363903..4364931 1 NC_007908.1 CRISPR-associated Cas1 family protein 4364931 3961547 Rfer_3907 Rhodoferax ferrireducens T118 CRISPR-associated Cas1 family protein YP_525137.1 4363903 D 338969 CDS YP_525138.1 89902667 3961548 4364941..4365231 1 NC_007908.1 hypothetical protein 4365231 3961548 Rfer_3908 Rhodoferax ferrireducens T118 hypothetical protein YP_525138.1 4364941 D 338969 CDS YP_525139.1 89902668 3961549 complement(4367093..4367401) 1 NC_007908.1 hypothetical protein 4367401 3961549 Rfer_3909 Rhodoferax ferrireducens T118 hypothetical protein YP_525139.1 4367093 R 338969 CDS YP_525140.1 89902669 3961550 4367709..4367990 1 NC_007908.1 hypothetical protein 4367990 3961550 Rfer_3910 Rhodoferax ferrireducens T118 hypothetical protein YP_525140.1 4367709 D 338969 CDS YP_525142.1 89902671 3961552 complement(4370844..4371095) 1 NC_007908.1 hypothetical protein 4371095 3961552 Rfer_3912 Rhodoferax ferrireducens T118 hypothetical protein YP_525142.1 4370844 R 338969 CDS YP_525143.1 89902672 3961553 4371274..4371672 1 NC_007908.1 rhodanese-like protein 4371672 3961553 Rfer_3913 Rhodoferax ferrireducens T118 rhodanese-like protein YP_525143.1 4371274 D 338969 CDS YP_525144.1 89902673 3961554 complement(4371714..4372418) 1 NC_007908.1 putative lipoprotein 4372418 3961554 Rfer_3914 Rhodoferax ferrireducens T118 putative lipoprotein YP_525144.1 4371714 R 338969 CDS YP_525145.1 89902674 3961555 complement(4372415..4373380) 1 NC_007908.1 hypothetical protein 4373380 3961555 Rfer_3915 Rhodoferax ferrireducens T118 hypothetical protein YP_525145.1 4372415 R 338969 CDS YP_525146.1 89902675 3961556 complement(4373392..4374207) 1 NC_007908.1 ABC transporter-like protein 4374207 3961556 Rfer_3916 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525146.1 4373392 R 338969 CDS YP_525147.1 89902676 3961557 complement(4374204..4375334) 1 NC_007908.1 hypothetical protein 4375334 3961557 Rfer_3917 Rhodoferax ferrireducens T118 hypothetical protein YP_525147.1 4374204 R 338969 CDS YP_525148.1 89902677 3961558 4375506..4377215 1 NC_007908.1 glucose-methanol-choline oxidoreductase 4377215 3961558 Rfer_3918 Rhodoferax ferrireducens T118 glucose-methanol-choline oxidoreductase YP_525148.1 4375506 D 338969 CDS YP_525149.1 89902678 3961559 4377471..4378229 1 NC_007908.1 hypothetical protein 4378229 3961559 Rfer_3919 Rhodoferax ferrireducens T118 hypothetical protein YP_525149.1 4377471 D 338969 CDS YP_525150.1 89902679 3961560 complement(4378252..4380273) 1 NC_007908.1 peptidoglycan glycosyltransferase 4380273 3961560 Rfer_3920 Rhodoferax ferrireducens T118 peptidoglycan glycosyltransferase YP_525150.1 4378252 R 338969 CDS YP_525151.1 89902680 3961561 complement(4380277..4380807) 1 NC_007908.1 rod shape-determining protein MreD 4380807 3961561 Rfer_3921 Rhodoferax ferrireducens T118 rod shape-determining protein MreD YP_525151.1 4380277 R 338969 CDS YP_525152.1 89902681 3961562 complement(4380804..4381724) 1 NC_007908.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 4381724 3961562 Rfer_3922 Rhodoferax ferrireducens T118 rod shape-determining protein MreC YP_525152.1 4380804 R 338969 CDS YP_525153.1 89902682 3961563 complement(4381740..4382783) 1 NC_007908.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 4382783 3961563 Rfer_3923 Rhodoferax ferrireducens T118 rod shape-determining protein MreB YP_525153.1 4381740 R 338969 CDS YP_525154.1 89902683 3961564 4382987..4383286 1 NC_007908.1 glutamyl-tRNA(Gln) amidotransferase subunit C 4383286 3961564 Rfer_3924 Rhodoferax ferrireducens T118 glutamyl-tRNA(Gln) amidotransferase subunit C YP_525154.1 4382987 D 338969 CDS YP_525155.1 89902684 3961565 4383312..4384793 1 NC_007908.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 4384793 gatA 3961565 gatA Rhodoferax ferrireducens T118 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_525155.1 4383312 D 338969 CDS YP_525156.1 89902685 3961566 4384796..4386286 1 NC_007908.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 4386286 gatB 3961566 gatB Rhodoferax ferrireducens T118 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_525156.1 4384796 D 338969 CDS YP_525157.1 89902686 3961567 complement(4386359..4387021) 1 NC_007908.1 hypothetical protein 4387021 3961567 Rfer_3927 Rhodoferax ferrireducens T118 hypothetical protein YP_525157.1 4386359 R 338969 CDS YP_525158.1 89902687 3961568 complement(4387024..4387695) 1 NC_007908.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 4387695 pyrE 3961568 pyrE Rhodoferax ferrireducens T118 orotate phosphoribosyltransferase YP_525158.1 4387024 R 338969 CDS YP_525159.1 89902688 3961569 4387758..4388549 1 NC_007908.1 exodeoxyribonuclease III 4388549 3961569 Rfer_3929 Rhodoferax ferrireducens T118 exodeoxyribonuclease III YP_525159.1 4387758 D 338969 CDS YP_525160.1 89902689 3961570 complement(4388609..4389307) 1 NC_007908.1 hypothetical protein 4389307 3961570 Rfer_3930 Rhodoferax ferrireducens T118 hypothetical protein YP_525160.1 4388609 R 338969 CDS YP_525161.1 89902690 3961571 complement(4389552..4393088) 1 NC_007908.1 SNF2-like protein 4393088 3961571 Rfer_3931 Rhodoferax ferrireducens T118 SNF2-like protein YP_525161.1 4389552 R 338969 CDS YP_525162.1 89902691 3961572 complement(4393763..4397170) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4397170 3961572 Rfer_3932 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_525162.1 4393763 R 338969 CDS YP_525163.1 89902692 3961573 4397379..4397999 1 NC_007908.1 hypothetical protein 4397999 3961573 Rfer_3933 Rhodoferax ferrireducens T118 hypothetical protein YP_525163.1 4397379 D 338969 CDS YP_525164.1 89902693 3961574 complement(4398046..4399062) 1 NC_007908.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 4399062 3961574 Rfer_3934 Rhodoferax ferrireducens T118 lipoyl synthase YP_525164.1 4398046 R 338969 CDS YP_525165.1 89902694 3961575 complement(4399110..4399802) 1 NC_007908.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 4399802 3961575 Rfer_3935 Rhodoferax ferrireducens T118 lipoate-protein ligase B YP_525165.1 4399110 R 338969 CDS YP_525166.1 89902695 3961576 complement(4399803..4400072) 1 NC_007908.1 hypothetical protein 4400072 3961576 Rfer_3936 Rhodoferax ferrireducens T118 hypothetical protein YP_525166.1 4399803 R 338969 CDS YP_525167.1 89902696 3961577 4400908..4402677 1 NC_007908.1 methyl-accepting chemotaxis sensory transducer 4402677 3961577 Rfer_3937 Rhodoferax ferrireducens T118 methyl-accepting chemotaxis sensory transducer YP_525167.1 4400908 D 338969 CDS YP_525168.1 89902697 3961578 complement(4402803..4405223) 1 NC_007908.1 putative GAF sensor protein 4405223 3961578 Rfer_3938 Rhodoferax ferrireducens T118 putative GAF sensor protein YP_525168.1 4402803 R 338969 CDS YP_525169.1 89902698 3961579 complement(4405220..4406011) 1 NC_007908.1 beta-lactamase-like protein 4406011 3961579 Rfer_3939 Rhodoferax ferrireducens T118 beta-lactamase-like protein YP_525169.1 4405220 R 338969 CDS YP_525170.1 89902699 3961580 complement(4406105..4406782) 1 NC_007908.1 FHA domain-containing protein 4406782 3961580 Rfer_3940 Rhodoferax ferrireducens T118 FHA domain-containing protein YP_525170.1 4406105 R 338969 CDS YP_525171.1 89902700 3961581 complement(4406831..4407616) 1 NC_007908.1 protein serine/threonine phosphatase 4407616 3961581 Rfer_3941 Rhodoferax ferrireducens T118 protein serine/threonine phosphatase YP_525171.1 4406831 R 338969 CDS YP_525172.1 89902701 3961582 complement(4407629..4410352) 1 NC_007908.1 serine/threonine protein kinase with Chase2 sensor 4410352 3961582 Rfer_3942 Rhodoferax ferrireducens T118 serine/threonine protein kinase with Chase2 sensor YP_525172.1 4407629 R 338969 CDS YP_525173.1 89902702 3961583 complement(4410561..4411259) 1 NC_007908.1 integral membrane protein TerC 4411259 3961583 Rfer_3943 Rhodoferax ferrireducens T118 integral membrane protein TerC YP_525173.1 4410561 R 338969 CDS YP_525174.1 89902703 3961584 complement(4411381..4412274) 1 NC_007908.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 4412274 3961584 Rfer_3944 Rhodoferax ferrireducens T118 succinyl-CoA synthetase subunit alpha YP_525174.1 4411381 R 338969 CDS YP_525175.1 89902704 3961585 complement(4412294..4413460) 1 NC_007908.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 4413460 sucC 3961585 sucC Rhodoferax ferrireducens T118 succinyl-CoA synthetase subunit beta YP_525175.1 4412294 R 338969 CDS YP_525176.1 89902705 3961586 4413622..4414557 1 NC_007908.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4414557 3961586 Rfer_3946 Rhodoferax ferrireducens T118 N-acetyl-gamma-glutamyl-phosphate reductase YP_525176.1 4413622 D 338969 CDS YP_525177.1 89902706 3961587 complement(4414639..4415100) 1 NC_007908.1 regulatory protein RecX 4415100 3961587 Rfer_3947 Rhodoferax ferrireducens T118 regulatory protein RecX YP_525177.1 4414639 R 338969 CDS YP_525178.1 89902707 3961588 complement(4415106..4416260) 1 NC_007908.1 recombination protein RecA 4416260 3961588 Rfer_3948 Rhodoferax ferrireducens T118 recombination protein RecA YP_525178.1 4415106 R 338969 CDS YP_525179.1 89902708 3961589 4416364..4416903 1 NC_007908.1 transcriptional regulatory protein 4416903 3961589 Rfer_3949 Rhodoferax ferrireducens T118 transcriptional regulatory protein YP_525179.1 4416364 D 338969 CDS YP_525180.1 89902709 3961590 4417001..4417675 1 NC_007908.1 two component transcriptional regulator 4417675 3961590 Rfer_3950 Rhodoferax ferrireducens T118 two component transcriptional regulator YP_525180.1 4417001 D 338969 CDS YP_525181.1 89902710 3961591 4417706..4419160 1 NC_007908.1 periplasmic sensor signal transduction histidine kinase 4419160 3961591 Rfer_3951 Rhodoferax ferrireducens T118 periplasmic sensor signal transduction histidine kinase YP_525181.1 4417706 D 338969 CDS YP_525182.1 89902711 3961592 complement(4419176..4419835) 1 NC_007908.1 hypothetical protein 4419835 3961592 Rfer_3952 Rhodoferax ferrireducens T118 hypothetical protein YP_525182.1 4419176 R 338969 CDS YP_525183.1 89902712 3961593 complement(4419876..4420682) 1 NC_007908.1 biotin--acetyl-CoA-carboxylase ligase 4420682 3961593 Rfer_3953 Rhodoferax ferrireducens T118 biotin--acetyl-CoA-carboxylase ligase YP_525183.1 4419876 R 338969 CDS YP_525184.1 89902713 3961594 complement(4420689..4421168) 1 NC_007908.1 nuclear protein SET 4421168 3961594 Rfer_3954 Rhodoferax ferrireducens T118 nuclear protein SET YP_525184.1 4420689 R 338969 CDS YP_525185.2 162289250 3961595 4421281..4424289 1 NC_007908.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 4424289 3961595 Rfer_3955 Rhodoferax ferrireducens T118 DNA topoisomerase III YP_525185.2 4421281 D 338969 CDS YP_525186.1 89902715 3961596 4424286..4425023 1 NC_007908.1 hypothetical protein 4425023 3961596 Rfer_3956 Rhodoferax ferrireducens T118 hypothetical protein YP_525186.1 4424286 D 338969 CDS YP_525187.1 89902716 3961597 4425075..4425422 1 NC_007908.1 hypothetical protein 4425422 3961597 Rfer_3957 Rhodoferax ferrireducens T118 hypothetical protein YP_525187.1 4425075 D 338969 CDS YP_525188.1 89902717 3961598 complement(4425565..4426173) 1 NC_007908.1 hypothetical protein 4426173 3961598 Rfer_3958 Rhodoferax ferrireducens T118 hypothetical protein YP_525188.1 4425565 R 338969 CDS YP_525189.1 89902718 3961599 4426655..4427302 1 NC_007908.1 hypothetical protein 4427302 3961599 Rfer_3959 Rhodoferax ferrireducens T118 hypothetical protein YP_525189.1 4426655 D 338969 CDS YP_525190.1 89902719 3961621 complement(4428075..4428284) 1 NC_007908.1 hypothetical protein 4428284 3961621 Rfer_3961 Rhodoferax ferrireducens T118 hypothetical protein YP_525190.1 4428075 R 338969 CDS YP_525191.1 89902720 3961622 4429115..4429684 1 NC_007908.1 YbhB; YbcL 4429684 3961622 Rfer_3962 Rhodoferax ferrireducens T118 YbcL YP_525191.1 4429115 D 338969 CDS YP_525192.1 89902721 3961623 4429902..4432037 1 NC_007908.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 4432037 3961623 Rfer_3963 Rhodoferax ferrireducens T118 acetoacetyl-CoA synthetase YP_525192.1 4429902 D 338969 CDS YP_525193.1 89902722 3961624 complement(4432050..4432466) 1 NC_007908.1 hypothetical protein 4432466 3961624 Rfer_3964 Rhodoferax ferrireducens T118 hypothetical protein YP_525193.1 4432050 R 338969 CDS YP_525194.1 89902723 3961625 4432605..4433675 1 NC_007908.1 pyruvate dehydrogenase (lipoamide) 4433675 3961625 Rfer_3965 Rhodoferax ferrireducens T118 pyruvate dehydrogenase (lipoamide) YP_525194.1 4432605 D 338969 CDS YP_525195.1 89902724 3961626 4433706..4434746 1 NC_007908.1 transketolase 4434746 3961626 Rfer_3966 Rhodoferax ferrireducens T118 transketolase YP_525195.1 4433706 D 338969 CDS YP_525196.1 89902725 3961627 4434743..4434994 1 NC_007908.1 biotin/lipoyl attachment 4434994 3961627 Rfer_3967 Rhodoferax ferrireducens T118 biotin/lipoyl attachment YP_525196.1 4434743 D 338969 CDS YP_525197.1 89902726 3961628 4435093..4435689 1 NC_007908.1 biotin/lipoate A/B protein ligase 4435689 3961628 Rfer_3968 Rhodoferax ferrireducens T118 biotin/lipoate A/B protein ligase YP_525197.1 4435093 D 338969 CDS YP_525198.1 89902727 3961629 complement(4435713..4436459) 1 NC_007908.1 hypothetical protein 4436459 3961629 Rfer_3969 Rhodoferax ferrireducens T118 hypothetical protein YP_525198.1 4435713 R 338969 CDS YP_525199.1 89902728 3961630 complement(4436684..4437835) 1 NC_007908.1 hypothetical protein 4437835 3961630 Rfer_3970 Rhodoferax ferrireducens T118 hypothetical protein YP_525199.1 4436684 R 338969 CDS YP_525200.1 89902729 3961631 complement(4437838..4438758) 1 NC_007908.1 ABC transporter-like protein 4438758 3961631 Rfer_3971 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525200.1 4437838 R 338969 CDS YP_525201.1 89902730 3961632 complement(4438758..4439750) 1 NC_007908.1 hypothetical protein 4439750 3961632 Rfer_3972 Rhodoferax ferrireducens T118 hypothetical protein YP_525201.1 4438758 R 338969 CDS YP_525202.1 89902731 3961633 complement(4439747..4440142) 1 NC_007908.1 hypothetical protein 4440142 3961633 Rfer_3973 Rhodoferax ferrireducens T118 hypothetical protein YP_525202.1 4439747 R 338969 CDS YP_525203.1 89902732 3961634 complement(4440142..4441275) 1 NC_007908.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 4441275 3961634 Rfer_3974 Rhodoferax ferrireducens T118 3-oxoacyl-(acyl carrier protein) synthase III YP_525203.1 4440142 R 338969 CDS YP_525204.1 89902733 3961635 complement(4441265..4442254) 1 NC_007908.1 hypothetical protein 4442254 3961635 Rfer_3975 Rhodoferax ferrireducens T118 hypothetical protein YP_525204.1 4441265 R 338969 CDS YP_525205.1 89902734 3961636 complement(4442341..4442892) 1 NC_007908.1 hypothetical protein 4442892 3961636 Rfer_3976 Rhodoferax ferrireducens T118 hypothetical protein YP_525205.1 4442341 R 338969 CDS YP_525206.1 89902735 3961637 complement(4442889..4443950) 1 NC_007908.1 beta-ketoacyl synthase 4443950 3961637 Rfer_3977 Rhodoferax ferrireducens T118 beta-ketoacyl synthase YP_525206.1 4442889 R 338969 CDS YP_525207.1 89902736 3961638 complement(4443947..4444219) 1 NC_007908.1 acyl carrier protein 4444219 3961638 Rfer_3978 Rhodoferax ferrireducens T118 acyl carrier protein YP_525207.1 4443947 R 338969 CDS YP_525208.1 89902737 3961639 complement(4444366..4445034) 1 NC_007908.1 PA-phosphatase-like phosphoesterase 4445034 3961639 Rfer_3979 Rhodoferax ferrireducens T118 PA-phosphatase-like phosphoesterase YP_525208.1 4444366 R 338969 CDS YP_525209.1 89902738 3961640 4445194..4445481 1 NC_007908.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein 4445481 3961640 Rfer_3980 Rhodoferax ferrireducens T118 acyl carrier protein YP_525209.1 4445194 D 338969 CDS YP_525210.1 89902739 3961641 4445478..4446122 1 NC_007908.1 transmembrane protein 4446122 3961641 Rfer_3981 Rhodoferax ferrireducens T118 transmembrane protein YP_525210.1 4445478 D 338969 CDS YP_525211.1 89902740 3961642 4446124..4446717 1 NC_007908.1 hypothetical protein 4446717 3961642 Rfer_3982 Rhodoferax ferrireducens T118 hypothetical protein YP_525211.1 4446124 D 338969 CDS YP_525212.1 89902741 3961643 4446714..4447568 1 NC_007908.1 polysaccharide deacetylase 4447568 3961643 Rfer_3983 Rhodoferax ferrireducens T118 polysaccharide deacetylase YP_525212.1 4446714 D 338969 CDS YP_525213.1 89902742 3961644 4447723..4448916 1 NC_007908.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 4448916 3961644 Rfer_3984 Rhodoferax ferrireducens T118 3-oxoacyl-(acyl carrier protein) synthase I YP_525213.1 4447723 D 338969 CDS YP_525214.1 89902743 3961645 4448913..4449707 1 NC_007908.1 hypothetical protein 4449707 3961645 Rfer_3985 Rhodoferax ferrireducens T118 hypothetical protein YP_525214.1 4448913 D 338969 CDS YP_525215.1 89902744 3961646 4449704..4450168 1 NC_007908.1 hypothetical protein 4450168 3961646 Rfer_3986 Rhodoferax ferrireducens T118 hypothetical protein YP_525215.1 4449704 D 338969 CDS YP_525216.1 89902745 3961647 4450165..4451511 1 NC_007908.1 hypothetical protein 4451511 3961647 Rfer_3987 Rhodoferax ferrireducens T118 hypothetical protein YP_525216.1 4450165 D 338969 CDS YP_525217.1 89902746 3961648 4451513..4451815 1 NC_007908.1 hypothetical protein 4451815 3961648 Rfer_3988 Rhodoferax ferrireducens T118 hypothetical protein YP_525217.1 4451513 D 338969 CDS YP_525218.1 89902747 3961649 4451808..4452722 1 NC_007908.1 lipid A biosynthesis acyltransferase 4452722 3961649 Rfer_3989 Rhodoferax ferrireducens T118 lipid A biosynthesis acyltransferase YP_525218.1 4451808 D 338969 CDS YP_525219.1 89902748 3961650 4452719..4455073 1 NC_007908.1 hypothetical protein 4455073 3961650 Rfer_3990 Rhodoferax ferrireducens T118 hypothetical protein YP_525219.1 4452719 D 338969 CDS YP_525220.1 89902749 3961651 4455057..4455785 1 NC_007908.1 hypothetical protein 4455785 3961651 Rfer_3991 Rhodoferax ferrireducens T118 hypothetical protein YP_525220.1 4455057 D 338969 CDS YP_525221.1 89902750 3961652 4455816..4456292 1 NC_007908.1 hypothetical protein 4456292 3961652 Rfer_3992 Rhodoferax ferrireducens T118 hypothetical protein YP_525221.1 4455816 D 338969 CDS YP_525222.1 89902751 3961653 4456299..4457099 1 NC_007908.1 hypothetical protein 4457099 3961653 Rfer_3993 Rhodoferax ferrireducens T118 hypothetical protein YP_525222.1 4456299 D 338969 CDS YP_525223.1 89902752 3961654 4457103..4457843 1 NC_007908.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 4457843 fabG 3961654 fabG Rhodoferax ferrireducens T118 3-ketoacyl-(acyl-carrier-protein) reductase YP_525223.1 4457103 D 338969 CDS YP_525224.1 89902753 3961655 4457857..4458993 1 NC_007908.1 hypothetical protein 4458993 3961655 Rfer_3995 Rhodoferax ferrireducens T118 hypothetical protein YP_525224.1 4457857 D 338969 CDS YP_525225.1 89902754 3961656 complement(4458990..4459859) 1 NC_007908.1 putative methyltransferase 4459859 3961656 Rfer_3996 Rhodoferax ferrireducens T118 putative methyltransferase YP_525225.1 4458990 R 338969 CDS YP_525226.1 89902755 3961657 complement(4459868..4460656) 1 NC_007908.1 glycosyl transferase family protein 4460656 3961657 Rfer_3997 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_525226.1 4459868 R 338969 CDS YP_525227.1 89902756 3961658 complement(4460660..4461406) 1 NC_007908.1 phospholipid/glycerol acyltransferase 4461406 3961658 Rfer_3998 Rhodoferax ferrireducens T118 phospholipid/glycerol acyltransferase YP_525227.1 4460660 R 338969 CDS YP_525228.1 89902757 3961659 complement(4461431..4462690) 1 NC_007908.1 beta-ketoacyl synthase 4462690 3961659 Rfer_3999 Rhodoferax ferrireducens T118 beta-ketoacyl synthase YP_525228.1 4461431 R 338969 CDS YP_525229.1 89902758 3961679 4462776..4463213 1 NC_007908.1 hypothetical protein 4463213 3961679 Rfer_4000 Rhodoferax ferrireducens T118 hypothetical protein YP_525229.1 4462776 D 338969 CDS YP_525230.1 89902759 3961680 4463224..4464486 1 NC_007908.1 beta-ketoacyl synthase 4464486 3961680 Rfer_4001 Rhodoferax ferrireducens T118 beta-ketoacyl synthase YP_525230.1 4463224 D 338969 CDS YP_525231.1 89902760 3961681 4464483..4464986 1 NC_007908.1 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 4464986 3961681 Rfer_4002 Rhodoferax ferrireducens T118 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_525231.1 4464483 D 338969 CDS YP_525232.1 89902761 3961682 complement(4465024..4465902) 1 NC_007908.1 hypothetical protein 4465902 3961682 Rfer_4003 Rhodoferax ferrireducens T118 hypothetical protein YP_525232.1 4465024 R 338969 CDS YP_525233.1 89902762 3961683 4466149..4466463 1 NC_007908.1 transport protein 4466463 3961683 Rfer_4004 Rhodoferax ferrireducens T118 transport protein YP_525233.1 4466149 D 338969 CDS YP_525234.1 89902763 3961684 4466630..4468462 1 NC_007908.1 hypothetical protein 4468462 3961684 Rfer_4005 Rhodoferax ferrireducens T118 hypothetical protein YP_525234.1 4466630 D 338969 CDS YP_525235.1 89902764 3961685 4468511..4470055 1 NC_007908.1 N-6 DNA methylase 4470055 3961685 Rfer_4006 Rhodoferax ferrireducens T118 N-6 DNA methylase YP_525235.1 4468511 D 338969 CDS YP_525236.1 89902765 3961686 4470052..4471290 1 NC_007908.1 restriction endonuclease S subunits-like protein 4471290 3961686 Rfer_4007 Rhodoferax ferrireducens T118 restriction endonuclease S subunits-like protein YP_525236.1 4470052 D 338969 CDS YP_525237.1 89902766 3961687 4471290..4471988 1 NC_007908.1 hypothetical protein 4471988 3961687 Rfer_4008 Rhodoferax ferrireducens T118 hypothetical protein YP_525237.1 4471290 D 338969 CDS YP_525238.1 89902767 3961688 4471985..4473007 1 NC_007908.1 hypothetical protein 4473007 3961688 Rfer_4009 Rhodoferax ferrireducens T118 hypothetical protein YP_525238.1 4471985 D 338969 CDS YP_525239.1 89902768 3961689 4473039..4476242 1 NC_007908.1 HsdR family type I site-specific deoxyribonuclease 4476242 3961689 Rfer_4010 Rhodoferax ferrireducens T118 HsdR family type I site-specific deoxyribonuclease YP_525239.1 4473039 D 338969 CDS YP_525240.1 89902769 3961690 complement(4476407..4477306) 1 NC_007908.1 LysR family transcriptional regulator 4477306 3961690 Rfer_4011 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_525240.1 4476407 R 338969 CDS YP_525241.1 89902770 3961691 4477429..4478130 1 NC_007908.1 nitroreductase 4478130 3961691 Rfer_4012 Rhodoferax ferrireducens T118 nitroreductase YP_525241.1 4477429 D 338969 CDS YP_525242.1 89902771 3961692 complement(4478294..4479235) 1 NC_007908.1 hypothetical protein 4479235 3961692 Rfer_4013 Rhodoferax ferrireducens T118 hypothetical protein YP_525242.1 4478294 R 338969 CDS YP_525243.1 89902772 3961693 4479857..4480375 1 NC_007908.1 hypothetical protein 4480375 3961693 Rfer_4014 Rhodoferax ferrireducens T118 hypothetical protein YP_525243.1 4479857 D 338969 CDS YP_525244.1 89902773 3961694 4480563..4480943 1 NC_007908.1 glyoxalase/bleomycin resistance protein/dioxygenase 4480943 3961694 Rfer_4015 Rhodoferax ferrireducens T118 glyoxalase/bleomycin resistance protein/dioxygenase YP_525244.1 4480563 D 338969 CDS YP_525245.1 89902774 3961695 complement(4480947..4481597) 1 NC_007908.1 2OG-Fe(II) oxygenase 4481597 3961695 Rfer_4016 Rhodoferax ferrireducens T118 2OG-Fe(II) oxygenase YP_525245.1 4480947 R 338969 CDS YP_525246.1 89902775 3961696 4481736..4482440 1 NC_007908.1 glutathione S-transferase-like protein 4482440 3961696 Rfer_4017 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_525246.1 4481736 D 338969 CDS YP_525247.1 89902776 3961697 complement(4482445..4483395) 1 NC_007908.1 rarD protein 4483395 3961697 Rfer_4018 Rhodoferax ferrireducens T118 rarD protein YP_525247.1 4482445 R 338969 CDS YP_525248.1 89902777 3961698 4483521..4484399 1 NC_007908.1 hypothetical protein 4484399 3961698 Rfer_4019 Rhodoferax ferrireducens T118 hypothetical protein YP_525248.1 4483521 D 338969 CDS YP_525249.1 89902778 3961699 4484566..4484817 1 NC_007908.1 hypothetical protein 4484817 3961699 Rfer_4020 Rhodoferax ferrireducens T118 hypothetical protein YP_525249.1 4484566 D 338969 CDS YP_525250.1 89902779 3961700 4484857..4485954 1 NC_007908.1 hypothetical protein 4485954 3961700 Rfer_4021 Rhodoferax ferrireducens T118 hypothetical protein YP_525250.1 4484857 D 338969 CDS YP_525251.1 89902780 3961701 complement(4485978..4486973) 1 NC_007908.1 aldo/keto reductase 4486973 3961701 Rfer_4022 Rhodoferax ferrireducens T118 aldo/keto reductase YP_525251.1 4485978 R 338969 CDS YP_525252.1 89902781 3961702 complement(4486997..4487380) 1 NC_007908.1 MerR family transcriptional regulator 4487380 3961702 Rfer_4023 Rhodoferax ferrireducens T118 MerR family transcriptional regulator YP_525252.1 4486997 R 338969 CDS YP_525253.1 89902782 3961703 4487557..4487910 1 NC_007908.1 hypothetical protein 4487910 3961703 Rfer_4024 Rhodoferax ferrireducens T118 hypothetical protein YP_525253.1 4487557 D 338969 CDS YP_525254.1 89902783 3961704 4488063..4488512 1 NC_007908.1 hypothetical protein 4488512 3961704 Rfer_4025 Rhodoferax ferrireducens T118 hypothetical protein YP_525254.1 4488063 D 338969 CDS YP_525255.1 89902784 3961705 4488530..4489015 1 NC_007908.1 glyoxalase/bleomycin resistance protein/dioxygenase 4489015 3961705 Rfer_4026 Rhodoferax ferrireducens T118 glyoxalase/bleomycin resistance protein/dioxygenase YP_525255.1 4488530 D 338969 CDS YP_525256.1 89902785 3961706 4489028..4490338 1 NC_007908.1 putative sigma factor 4490338 3961706 Rfer_4027 Rhodoferax ferrireducens T118 putative sigma factor YP_525256.1 4489028 D 338969 CDS YP_525257.1 89902786 3961707 4490691..4492034 1 NC_007908.1 diguanylate cyclase 4492034 3961707 Rfer_4028 Rhodoferax ferrireducens T118 diguanylate cyclase YP_525257.1 4490691 D 338969 CDS YP_525258.1 89902787 3961708 complement(4492068..4493183) 1 NC_007908.1 putative DNA alkylation repair enzyme 4493183 3961708 Rfer_4029 Rhodoferax ferrireducens T118 putative DNA alkylation repair enzyme YP_525258.1 4492068 R 338969 CDS YP_525259.1 89902788 3961709 4493463..4494959 1 NC_007908.1 diguanylate cyclase 4494959 3961709 Rfer_4030 Rhodoferax ferrireducens T118 diguanylate cyclase YP_525259.1 4493463 D 338969 CDS YP_525260.1 89902789 3961710 4494988..4495554 1 NC_007908.1 hypothetical protein 4495554 3961710 Rfer_4031 Rhodoferax ferrireducens T118 hypothetical protein YP_525260.1 4494988 D 338969 CDS YP_525261.1 89902790 3961711 complement(4495595..4495801) 1 NC_007908.1 hypothetical protein 4495801 3961711 Rfer_4032 Rhodoferax ferrireducens T118 hypothetical protein YP_525261.1 4495595 R 338969 CDS YP_525262.1 89902791 3961712 4496083..4497111 1 NC_007908.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase-like protein 4497111 3961712 Rfer_4033 Rhodoferax ferrireducens T118 6-phosphogluconate dehydrogenase-like protein YP_525262.1 4496083 D 338969 CDS YP_525263.1 89902792 3961713 4497119..4498537 1 NC_007908.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4498537 3961713 Rfer_4034 Rhodoferax ferrireducens T118 glucose-6-phosphate 1-dehydrogenase YP_525263.1 4497119 D 338969 CDS YP_525264.1 89902793 3961714 4498606..4500441 1 NC_007908.1 glycoside hydrolase 15-like protein 4500441 3961714 Rfer_4035 Rhodoferax ferrireducens T118 glycoside hydrolase 15-like protein YP_525264.1 4498606 D 338969 CDS YP_525265.1 89902794 3961715 4500593..4502143 1 NC_007908.1 O-antigen polymerase 4502143 3961715 Rfer_4036 Rhodoferax ferrireducens T118 O-antigen polymerase YP_525265.1 4500593 D 338969 CDS YP_525266.1 89902795 3961716 4502384..4503466 1 NC_007908.1 filamentation induced by cAMP protein Fic 4503466 3961716 Rfer_4037 Rhodoferax ferrireducens T118 filamentation induced by cAMP protein Fic YP_525266.1 4502384 D 338969 CDS YP_525267.1 89902796 3961717 complement(4503630..4505618) 1 NC_007908.1 PA-phosphatase-like phosphoesterase 4505618 3961717 Rfer_4038 Rhodoferax ferrireducens T118 PA-phosphatase-like phosphoesterase YP_525267.1 4503630 R 338969 CDS YP_525268.1 89902797 3961718 4505718..4505999 1 NC_007908.1 hypothetical protein 4505999 3961718 Rfer_4039 Rhodoferax ferrireducens T118 hypothetical protein YP_525268.1 4505718 D 338969 CDS YP_525269.1 89902798 3961719 complement(4506186..4506677) 1 NC_007908.1 molybdenum cofactor biosynthesis protein C 4506677 3961719 Rfer_4040 Rhodoferax ferrireducens T118 molybdenum cofactor biosynthesis protein C YP_525269.1 4506186 R 338969 CDS YP_525270.1 89902799 3961720 4506899..4508545 1 NC_007908.1 peptidase M48, Ste24p 4508545 3961720 Rfer_4041 Rhodoferax ferrireducens T118 peptidase M48, Ste24p YP_525270.1 4506899 D 338969 CDS YP_525271.1 89902800 3961721 complement(4508513..4508932) 1 NC_007908.1 hypothetical protein 4508932 3961721 Rfer_4042 Rhodoferax ferrireducens T118 hypothetical protein YP_525271.1 4508513 R 338969 CDS YP_525272.1 89902801 3961722 complement(4508961..4509443) 1 NC_007908.1 hypothetical protein 4509443 3961722 Rfer_4043 Rhodoferax ferrireducens T118 hypothetical protein YP_525272.1 4508961 R 338969 CDS YP_525273.1 89902802 3961723 complement(4509440..4510159) 1 NC_007908.1 integral membrane protein TerC 4510159 3961723 Rfer_4044 Rhodoferax ferrireducens T118 integral membrane protein TerC YP_525273.1 4509440 R 338969 CDS YP_525274.1 89902803 3961724 4510327..4510797 1 NC_007908.1 hypothetical protein 4510797 3961724 Rfer_4045 Rhodoferax ferrireducens T118 hypothetical protein YP_525274.1 4510327 D 338969 CDS YP_525275.1 89902804 3961725 complement(4510822..4511709) 1 NC_007908.1 hypothetical protein 4511709 3961725 Rfer_4046 Rhodoferax ferrireducens T118 hypothetical protein YP_525275.1 4510822 R 338969 CDS YP_525276.1 89902805 3961726 complement(4511758..4512507) 1 NC_007908.1 3-oxoacyl-(acyl-carrier-protein) reductase 4512507 3961726 Rfer_4047 Rhodoferax ferrireducens T118 3-oxoacyl-(acyl-carrier-protein) reductase YP_525276.1 4511758 R 338969 CDS YP_525277.1 89902806 3961727 complement(4512665..4513285) 1 NC_007908.1 YaeQ 4513285 3961727 Rfer_4048 Rhodoferax ferrireducens T118 YaeQ YP_525277.1 4512665 R 338969 CDS YP_525278.1 89902807 3961728 complement(4513305..4514684) 1 NC_007908.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4514684 3961728 Rfer_4049 Rhodoferax ferrireducens T118 adenylosuccinate lyase YP_525278.1 4513305 R 338969 CDS YP_525279.1 89902808 3961729 4514794..4515408 1 NC_007908.1 glutathione S-transferase-like protein 4515408 3961729 Rfer_4050 Rhodoferax ferrireducens T118 glutathione S-transferase-like protein YP_525279.1 4514794 D 338969 CDS YP_525280.1 89902809 3961730 complement(4515425..4516774) 1 NC_007908.1 HD-GYP domain-containing protein 4516774 3961730 Rfer_4051 Rhodoferax ferrireducens T118 HD-GYP domain-containing protein YP_525280.1 4515425 R 338969 CDS YP_525281.1 89902810 3961731 4516782..4517294 1 NC_007908.1 bifunctional ADP-heptose synthase 4517294 3961731 Rfer_4052 Rhodoferax ferrireducens T118 bifunctional ADP-heptose synthase YP_525281.1 4516782 D 338969 CDS YP_525282.1 89902811 3961732 complement(4517375..4518544) 1 NC_007908.1 FAD dependent oxidoreductase 4518544 3961732 Rfer_4053 Rhodoferax ferrireducens T118 FAD dependent oxidoreductase YP_525282.1 4517375 R 338969 CDS YP_525283.1 89902812 3961733 4518783..4519898 1 NC_007908.1 alanine dehydrogenase 4519898 3961733 Rfer_4054 Rhodoferax ferrireducens T118 alanine dehydrogenase YP_525283.1 4518783 D 338969 CDS YP_525284.1 89902813 3961734 complement(4519903..4523061) 1 NC_007908.1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4523061 3961734 Rfer_4055 Rhodoferax ferrireducens T118 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_525284.1 4519903 R 338969 CDS YP_525285.1 89902814 3961735 4523104..4524030 1 NC_007908.1 hypothetical protein 4524030 3961735 Rfer_4056 Rhodoferax ferrireducens T118 hypothetical protein YP_525285.1 4523104 D 338969 CDS YP_525286.1 89902815 3961736 4524138..4524656 1 NC_007908.1 flavin reductase-like protein 4524656 3961736 Rfer_4057 Rhodoferax ferrireducens T118 flavin reductase-like protein YP_525286.1 4524138 D 338969 CDS YP_525287.1 89902816 3961737 complement(4524662..4526698) 1 NC_007908.1 glycosyl transferase family protein 4526698 3961737 Rfer_4058 Rhodoferax ferrireducens T118 glycosyl transferase family protein YP_525287.1 4524662 R 338969 CDS YP_525288.1 89902817 3961738 complement(4526776..4527696) 1 NC_007908.1 putative signal peptide protein 4527696 3961738 Rfer_4059 Rhodoferax ferrireducens T118 putative signal peptide protein YP_525288.1 4526776 R 338969 CDS YP_525289.1 89902818 3961739 complement(4527788..4528750) 1 NC_007908.1 hypothetical protein 4528750 3961739 Rfer_4060 Rhodoferax ferrireducens T118 hypothetical protein YP_525289.1 4527788 R 338969 CDS YP_525290.1 89902819 3961740 complement(4528747..4529469) 1 NC_007908.1 TetR family transcriptional regulator 4529469 3961740 Rfer_4061 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_525290.1 4528747 R 338969 CDS YP_525291.1 89902820 3961741 4529585..4530454 1 NC_007908.1 ABC transporter-like protein 4530454 3961741 Rfer_4062 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525291.1 4529585 D 338969 CDS YP_525292.1 89902821 3961742 4530454..4531332 1 NC_007908.1 inner-membrane translocator 4531332 3961742 Rfer_4063 Rhodoferax ferrireducens T118 inner-membrane translocator YP_525292.1 4530454 D 338969 CDS YP_525293.1 89902822 3961743 4531423..4532460 1 NC_007908.1 inner-membrane translocator 4532460 3961743 Rfer_4064 Rhodoferax ferrireducens T118 inner-membrane translocator YP_525293.1 4531423 D 338969 CDS YP_525294.1 89902823 3961744 4532514..4533689 1 NC_007908.1 extracellular ligand-binding receptor 4533689 3961744 Rfer_4065 Rhodoferax ferrireducens T118 extracellular ligand-binding receptor YP_525294.1 4532514 D 338969 CDS YP_525295.1 89902824 3961745 4533706..4534524 1 NC_007908.1 ABC transporter-like protein 4534524 3961745 Rfer_4066 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525295.1 4533706 D 338969 CDS YP_525296.1 89902825 3961746 4534527..4536338 1 NC_007908.1 AMP-dependent synthetase and ligase 4536338 3961746 Rfer_4067 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_525296.1 4534527 D 338969 CDS YP_525297.1 89902826 3961747 4536349..4537152 1 NC_007908.1 enoyl-CoA hydratase/isomerase 4537152 3961747 Rfer_4068 Rhodoferax ferrireducens T118 enoyl-CoA hydratase/isomerase YP_525297.1 4536349 D 338969 CDS YP_525298.1 89902827 3961748 complement(4537174..4538454) 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 4538454 3961748 Rfer_4069 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_525298.1 4537174 R 338969 CDS YP_525299.1 89902828 3961749 complement(4538992..4540188) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 4540188 3961749 Rfer_4070 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_525299.1 4538992 R 338969 CDS YP_525300.1 89902829 3961750 4540438..4541370 1 NC_007908.1 LysR family transcriptional regulator 4541370 3961750 Rfer_4071 Rhodoferax ferrireducens T118 LysR family transcriptional regulator YP_525300.1 4540438 D 338969 CDS YP_525301.1 89902830 3961751 4541575..4542105 1 NC_007908.1 protoporphyrinogen oxidase 4542105 3961751 Rfer_4072 Rhodoferax ferrireducens T118 protoporphyrinogen oxidase YP_525301.1 4541575 D 338969 CDS YP_525302.1 89902831 3961752 complement(4542264..4544252) 1 NC_007908.1 cytochrome c family protein 4544252 3961752 Rfer_4073 Rhodoferax ferrireducens T118 cytochrome c family protein YP_525302.1 4542264 R 338969 CDS YP_525303.1 89902832 3961753 complement(4544506..4544754) 1 NC_007908.1 hypothetical protein 4544754 3961753 Rfer_4074 Rhodoferax ferrireducens T118 hypothetical protein YP_525303.1 4544506 R 338969 CDS YP_525304.1 89902833 3961754 complement(4544807..4545403) 1 NC_007908.1 NapC/NirT cytochrome c-like protein 4545403 3961754 Rfer_4075 Rhodoferax ferrireducens T118 NapC/NirT cytochrome c-like protein YP_525304.1 4544807 R 338969 CDS YP_525305.1 89902834 3961755 complement(4545473..4546093) 1 NC_007908.1 NapC/NirT cytochrome c-like protein 4546093 3961755 Rfer_4076 Rhodoferax ferrireducens T118 NapC/NirT cytochrome c-like protein YP_525305.1 4545473 R 338969 CDS YP_525306.1 89902835 3961756 complement(4546230..4546559) 1 NC_007908.1 class I cytochrome c 4546559 3961756 Rfer_4077 Rhodoferax ferrireducens T118 class I cytochrome c YP_525306.1 4546230 R 338969 CDS YP_525307.1 89902836 3961776 complement(4546817..4547230) 1 NC_007908.1 hypothetical protein 4547230 3961776 Rfer_4078 Rhodoferax ferrireducens T118 hypothetical protein YP_525307.1 4546817 R 338969 CDS YP_525308.1 89902837 3961777 complement(4547343..4550000) 1 NC_007908.1 hypothetical protein 4550000 3961777 Rfer_4079 Rhodoferax ferrireducens T118 hypothetical protein YP_525308.1 4547343 R 338969 CDS YP_525309.1 89902838 3961778 complement(4550312..4553122) 1 NC_007908.1 hypothetical protein 4553122 3961778 Rfer_4080 Rhodoferax ferrireducens T118 hypothetical protein YP_525309.1 4550312 R 338969 CDS YP_525310.1 89902839 3961779 complement(4553557..4555677) 1 NC_007908.1 hypothetical protein 4555677 3961779 Rfer_4081 Rhodoferax ferrireducens T118 hypothetical protein YP_525310.1 4553557 R 338969 CDS YP_525311.1 89902840 3961780 complement(4555694..4556617) 1 NC_007908.1 hypothetical protein 4556617 3961780 Rfer_4082 Rhodoferax ferrireducens T118 hypothetical protein YP_525311.1 4555694 R 338969 CDS YP_525312.1 89902841 3961781 complement(4556721..4559201) 1 NC_007908.1 hypothetical protein 4559201 3961781 Rfer_4083 Rhodoferax ferrireducens T118 hypothetical protein YP_525312.1 4556721 R 338969 CDS YP_525313.1 89902842 3961782 complement(4559330..4559938) 1 NC_007908.1 PT repeat-containing protein 4559938 3961782 Rfer_4084 Rhodoferax ferrireducens T118 PT repeat-containing protein YP_525313.1 4559330 R 338969 CDS YP_525314.1 89902843 3961783 complement(4560104..4560448) 1 NC_007908.1 class I cytochrome c 4560448 3961783 Rfer_4085 Rhodoferax ferrireducens T118 class I cytochrome c YP_525314.1 4560104 R 338969 CDS YP_525315.1 89902844 3961784 complement(4560694..4561539) 1 NC_007908.1 putative signal transduction protein 4561539 3961784 Rfer_4086 Rhodoferax ferrireducens T118 putative signal transduction protein YP_525315.1 4560694 R 338969 CDS YP_525316.1 89902845 3961785 complement(4561681..4562283) 1 NC_007908.1 HupE/UreJ protein 4562283 3961785 Rfer_4087 Rhodoferax ferrireducens T118 HupE/UreJ protein YP_525316.1 4561681 R 338969 CDS YP_525317.1 89902846 3961786 4562588..4563769 1 NC_007908.1 hydrogenase (NiFe) small subunit HydA 4563769 3961786 Rfer_4088 Rhodoferax ferrireducens T118 hydrogenase (NiFe) small subunit HydA YP_525317.1 4562588 D 338969 CDS YP_525318.1 89902847 3961787 4563772..4564767 1 NC_007908.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 4564767 3961787 Rfer_4089 Rhodoferax ferrireducens T118 hydrogenase 2 protein HybA YP_525318.1 4563772 D 338969 CDS YP_525319.1 89902848 3961788 4564770..4565936 1 NC_007908.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit 4565936 3961788 Rfer_4090 Rhodoferax ferrireducens T118 putative hydrogenase 2 b cytochrome subunit YP_525319.1 4564770 D 338969 CDS YP_525320.1 89902849 3961789 4565960..4567666 1 NC_007908.1 nickel-dependent hydrogenase large subunit 4567666 3961789 Rfer_4091 Rhodoferax ferrireducens T118 nickel-dependent hydrogenase large subunit YP_525320.1 4565960 D 338969 CDS YP_525321.1 89902850 3961790 4567695..4568219 1 NC_007908.1 peptidase M52, hydrogen uptake protein 4568219 3961790 Rfer_4092 Rhodoferax ferrireducens T118 peptidase M52, hydrogen uptake protein YP_525321.1 4567695 D 338969 CDS YP_525322.1 89902851 3961791 4568221..4568475 1 NC_007908.1 hydrogenase assembly chaperone hypC/hupF 4568475 3961791 Rfer_4093 Rhodoferax ferrireducens T118 hydrogenase assembly chaperone hypC/hupF YP_525322.1 4568221 D 338969 CDS YP_525323.1 89902852 3961792 4568472..4568969 1 NC_007908.1 hypothetical protein 4568969 3961792 Rfer_4094 Rhodoferax ferrireducens T118 hypothetical protein YP_525323.1 4568472 D 338969 CDS YP_525324.1 89902853 3961793 4568980..4569321 1 NC_007908.1 hydrogenase nickel insertion protein HypA 4569321 3961793 Rfer_4095 Rhodoferax ferrireducens T118 hydrogenase nickel insertion protein HypA YP_525324.1 4568980 D 338969 CDS YP_525325.1 89902854 3961794 4569342..4570280 1 NC_007908.1 hydrogenase accessory protein HypB 4570280 3961794 Rfer_4096 Rhodoferax ferrireducens T118 hydrogenase accessory protein HypB YP_525325.1 4569342 D 338969 CDS YP_525326.1 89902855 3961795 4570277..4572646 1 NC_007908.1 (NiFe) hydrogenase maturation protein HypF 4572646 3961795 Rfer_4097 Rhodoferax ferrireducens T118 (NiFe) hydrogenase maturation protein HypF YP_525326.1 4570277 D 338969 CDS YP_525327.1 89902856 3961796 4572639..4572857 1 NC_007908.1 hydrogenase assembly chaperone hypC/hupF 4572857 3961796 Rfer_4098 Rhodoferax ferrireducens T118 hydrogenase assembly chaperone hypC/hupF YP_525327.1 4572639 D 338969 CDS YP_525328.1 89902857 3961797 4572854..4573984 1 NC_007908.1 hydrogenase expression/formation protein HypD 4573984 3961797 Rfer_4099 Rhodoferax ferrireducens T118 hydrogenase expression/formation protein HypD YP_525328.1 4572854 D 338969 CDS YP_525329.1 89902858 3961798 4573981..4575045 1 NC_007908.1 hydrogenase expression/formation protein HypE 4575045 3961798 Rfer_4100 Rhodoferax ferrireducens T118 hydrogenase expression/formation protein HypE YP_525329.1 4573981 D 338969 CDS YP_525330.1 89902859 3961799 4575053..4576750 1 NC_007908.1 formyl transferase-like protein 4576750 3961799 Rfer_4101 Rhodoferax ferrireducens T118 formyl transferase-like protein YP_525330.1 4575053 D 338969 CDS YP_525331.1 89902860 3961800 4576747..4578174 1 NC_007908.1 Fis family two component sigma-54 specific transcriptional regulator 4578174 3961800 Rfer_4102 Rhodoferax ferrireducens T118 Fis family two component sigma-54 specific transcriptional regulator YP_525331.1 4576747 D 338969 CDS YP_525332.1 89902861 3961801 complement(4578201..4578851) 1 NC_007908.1 TetR family transcriptional regulator 4578851 3961801 Rfer_4103 Rhodoferax ferrireducens T118 TetR family transcriptional regulator YP_525332.1 4578201 R 338969 CDS YP_525333.1 89902862 3961802 complement(4578848..4581943) 1 NC_007908.1 acriflavin resistance protein 4581943 3961802 Rfer_4104 Rhodoferax ferrireducens T118 acriflavin resistance protein YP_525333.1 4578848 R 338969 CDS YP_525334.1 89902863 3961803 complement(4581957..4583108) 1 NC_007908.1 secretion protein HlyD 4583108 3961803 Rfer_4105 Rhodoferax ferrireducens T118 secretion protein HlyD YP_525334.1 4581957 R 338969 CDS YP_525335.1 89902864 3961804 complement(4583146..4584603) 1 NC_007908.1 RND efflux system outer membrane lipoprotein NodT 4584603 3961804 Rfer_4106 Rhodoferax ferrireducens T118 RND efflux system outer membrane lipoprotein NodT YP_525335.1 4583146 R 338969 CDS YP_525336.1 89902865 3961805 4585073..4585696 1 NC_007908.1 hypothetical protein 4585696 3961805 Rfer_4107 Rhodoferax ferrireducens T118 hypothetical protein YP_525336.1 4585073 D 338969 CDS YP_525337.1 89902866 3961806 4586282..4586764 1 NC_007908.1 3-demethylubiquinone-9 3-methyltransferase 4586764 3961806 Rfer_4108 Rhodoferax ferrireducens T118 3-demethylubiquinone-9 3-methyltransferase YP_525337.1 4586282 D 338969 CDS YP_525338.1 89902867 3961807 4586761..4587108 1 NC_007908.1 glutathione-dependent formaldehyde-activating protein 4587108 3961807 Rfer_4109 Rhodoferax ferrireducens T118 glutathione-dependent formaldehyde-activating protein YP_525338.1 4586761 D 338969 CDS YP_525339.1 89902868 3961808 4587166..4587579 1 NC_007908.1 3-demethylubiquinone-9 3-methyltransferase 4587579 3961808 Rfer_4110 Rhodoferax ferrireducens T118 3-demethylubiquinone-9 3-methyltransferase YP_525339.1 4587166 D 338969 CDS YP_525340.1 89902869 3961809 complement(4587642..4588640) 1 NC_007908.1 glyceraldehyde-3-phosphate dehydrogenase 4588640 3961809 Rfer_4111 Rhodoferax ferrireducens T118 glyceraldehyde-3-phosphate dehydrogenase YP_525340.1 4587642 R 338969 CDS YP_525341.1 89902870 3961810 complement(4588676..4590757) 1 NC_007908.1 transketolase 4590757 3961810 Rfer_4112 Rhodoferax ferrireducens T118 transketolase YP_525341.1 4588676 R 338969 CDS YP_525342.1 89902871 3961811 4590875..4591996 1 NC_007908.1 NADH:flavin oxidoreductase/NADH oxidase 4591996 3961811 Rfer_4113 Rhodoferax ferrireducens T118 NADH:flavin oxidoreductase/NADH oxidase YP_525342.1 4590875 D 338969 CDS YP_525343.1 89902872 3961812 complement(4592058..4592543) 1 NC_007908.1 phenylacetic acid degradation-like protein 4592543 3961812 Rfer_4114 Rhodoferax ferrireducens T118 phenylacetic acid degradation-like protein YP_525343.1 4592058 R 338969 CDS YP_525344.1 89902873 3961813 4592632..4593072 1 NC_007908.1 MarR family transcriptional regulator 4593072 3961813 Rfer_4115 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_525344.1 4592632 D 338969 CDS YP_525345.1 89902874 3961814 4593090..4593479 1 NC_007908.1 hypothetical protein 4593479 3961814 Rfer_4116 Rhodoferax ferrireducens T118 hypothetical protein YP_525345.1 4593090 D 338969 CDS YP_525346.1 89902875 3961815 complement(4593586..4594590) 1 NC_007908.1 hypothetical protein 4594590 3961815 Rfer_4117 Rhodoferax ferrireducens T118 hypothetical protein YP_525346.1 4593586 R 338969 CDS YP_525347.1 89902876 3961816 4594784..4595959 1 NC_007908.1 putative hydrogenase expression/formation protein HupK 4595959 3961816 Rfer_4118 Rhodoferax ferrireducens T118 putative hydrogenase expression/formation protein HupK YP_525347.1 4594784 D 338969 CDS YP_525348.1 89902877 3961817 complement(4595946..4596215) 1 NC_007908.1 4Fe-4S ferredoxin 4596215 3961817 Rfer_4119 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_525348.1 4595946 R 338969 CDS YP_525349.1 89902878 3961818 4596339..4597361 1 NC_007908.1 uptake hydrogenase accessory protein HupU 4597361 3961818 Rfer_4120 Rhodoferax ferrireducens T118 uptake hydrogenase accessory protein HupU YP_525349.1 4596339 D 338969 CDS YP_525350.1 89902879 3961819 4597376..4598866 1 NC_007908.1 hydrogen:quinone oxidoreductase 4598866 3961819 Rfer_4121 Rhodoferax ferrireducens T118 hydrogen:quinone oxidoreductase YP_525350.1 4597376 D 338969 CDS YP_525351.1 89902880 3961820 4598872..4600221 1 NC_007908.1 PAS/PAC sensor signal transduction histidine kinase 4600221 3961820 Rfer_4122 Rhodoferax ferrireducens T118 PAS/PAC sensor signal transduction histidine kinase YP_525351.1 4598872 D 338969 CDS YP_525352.1 89902881 3961821 complement(4600253..4600885) 1 NC_007908.1 hypothetical protein 4600885 3961821 Rfer_4123 Rhodoferax ferrireducens T118 hypothetical protein YP_525352.1 4600253 R 338969 CDS YP_525353.1 89902882 3961822 complement(4600882..4601526) 1 NC_007908.1 hypothetical protein 4601526 3961822 Rfer_4124 Rhodoferax ferrireducens T118 hypothetical protein YP_525353.1 4600882 R 338969 CDS YP_525354.1 89902883 3961823 complement(4601573..4602181) 1 NC_007908.1 class I cytochrome c 4602181 3961823 Rfer_4125 Rhodoferax ferrireducens T118 class I cytochrome c YP_525354.1 4601573 R 338969 CDS YP_525355.1 89902884 3961824 complement(4602202..4602804) 1 NC_007908.1 cytochrome C oxidase, mono-heme subunit/FixO 4602804 3961824 Rfer_4126 Rhodoferax ferrireducens T118 cytochrome C oxidase, mono-heme subunit/FixO YP_525355.1 4602202 R 338969 CDS YP_525356.1 89902885 3961825 complement(4602794..4604446) 1 NC_007908.1 cytochrome c oxidase subunit I 4604446 3961825 Rfer_4127 Rhodoferax ferrireducens T118 cytochrome c oxidase subunit I YP_525356.1 4602794 R 338969 CDS YP_525357.1 89902886 3961826 complement(4604446..4604706) 1 NC_007908.1 hypothetical protein 4604706 3961826 Rfer_4128 Rhodoferax ferrireducens T118 hypothetical protein YP_525357.1 4604446 R 338969 CDS YP_525358.1 89902887 3961827 complement(4604916..4605521) 1 NC_007908.1 uracil-DNA glycosylase superfamily protein 4605521 3961827 Rfer_4129 Rhodoferax ferrireducens T118 uracil-DNA glycosylase superfamily protein YP_525358.1 4604916 R 338969 CDS YP_525359.1 89902888 3961828 4605920..4606309 1 NC_007908.1 hypothetical protein 4606309 3961828 Rfer_4130 Rhodoferax ferrireducens T118 hypothetical protein YP_525359.1 4605920 D 338969 CDS YP_525360.1 89902889 3961829 4606350..4606697 1 NC_007908.1 alkylhydroperoxidase 4606697 3961829 Rfer_4131 Rhodoferax ferrireducens T118 alkylhydroperoxidase YP_525360.1 4606350 D 338969 CDS YP_525361.1 89902890 3961831 4607309..4607743 1 NC_007908.1 MarR family transcriptional regulator 4607743 3961831 Rfer_4133 Rhodoferax ferrireducens T118 MarR family transcriptional regulator YP_525361.1 4607309 D 338969 CDS YP_525362.1 89902891 3961832 4608059..4609336 1 NC_007908.1 putative lipoprotein 4609336 3961832 Rfer_4134 Rhodoferax ferrireducens T118 putative lipoprotein YP_525362.1 4608059 D 338969 CDS YP_525363.1 89902892 3961834 4609858..4610577 1 NC_007908.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 4610577 3961834 Rfer_4136 Rhodoferax ferrireducens T118 RNA polymerase sigma factor YP_525363.1 4609858 D 338969 CDS YP_525364.1 89902893 3961835 4610613..4611185 1 NC_007908.1 hypothetical protein 4611185 3961835 Rfer_4137 Rhodoferax ferrireducens T118 hypothetical protein YP_525364.1 4610613 D 338969 CDS YP_525365.1 89902894 3961836 4611185..4611586 1 NC_007908.1 class I cytochrome c 4611586 3961836 Rfer_4138 Rhodoferax ferrireducens T118 class I cytochrome c YP_525365.1 4611185 D 338969 CDS YP_525366.1 89902895 3961837 complement(4611688..4612860) 1 NC_007908.1 methionine gamma-lyase 4612860 3961837 Rfer_4139 Rhodoferax ferrireducens T118 methionine gamma-lyase YP_525366.1 4611688 R 338969 CDS YP_525367.1 89902896 3961838 complement(4612877..4614001) 1 NC_007908.1 C4-dicarboxylate transporter/malic acid transport protein 4614001 3961838 Rfer_4140 Rhodoferax ferrireducens T118 C4-dicarboxylate transporter/malic acid transport protein YP_525367.1 4612877 R 338969 CDS YP_525368.1 89902897 3961839 complement(4613998..4615182) 1 NC_007908.1 cytochrome P450 4615182 3961839 Rfer_4141 Rhodoferax ferrireducens T118 cytochrome P450 YP_525368.1 4613998 R 338969 CDS YP_525369.1 89902898 3961840 complement(4615250..4616026) 1 NC_007908.1 metallophosphoesterase 4616026 3961840 Rfer_4142 Rhodoferax ferrireducens T118 metallophosphoesterase YP_525369.1 4615250 R 338969 CDS YP_525370.1 89902899 3961841 complement(4616239..4616562) 1 NC_007908.1 4Fe-4S ferredoxin 4616562 3961841 Rfer_4143 Rhodoferax ferrireducens T118 4Fe-4S ferredoxin YP_525370.1 4616239 R 338969 CDS YP_525371.1 89902900 3961842 complement(4616752..4617360) 1 NC_007908.1 hypothetical protein 4617360 3961842 Rfer_4144 Rhodoferax ferrireducens T118 hypothetical protein YP_525371.1 4616752 R 338969 CDS YP_525372.1 89902901 3961843 complement(4617369..4617629) 1 NC_007908.1 hypothetical protein 4617629 3961843 Rfer_4145 Rhodoferax ferrireducens T118 hypothetical protein YP_525372.1 4617369 R 338969 CDS YP_525373.1 89902902 3961844 4617914..4618477 1 NC_007908.1 sigma-24 (FecI-like protein) 4618477 3961844 Rfer_4146 Rhodoferax ferrireducens T118 sigma-24 (FecI-like protein) YP_525373.1 4617914 D 338969 CDS YP_525374.1 89902903 3961845 4618474..4618932 1 NC_007908.1 putative transmembrane transcriptional regulator (anti-sigma factor) 4618932 3961845 Rfer_4147 Rhodoferax ferrireducens T118 putative transmembrane transcriptional regulator (anti-sigma factor) YP_525374.1 4618474 D 338969 CDS YP_525375.1 89902904 3961846 4618934..4619410 1 NC_007908.1 hypothetical protein 4619410 3961846 Rfer_4148 Rhodoferax ferrireducens T118 hypothetical protein YP_525375.1 4618934 D 338969 CDS YP_525376.1 89902905 3961847 4619591..4620217 1 NC_007908.1 hypothetical protein 4620217 3961847 Rfer_4149 Rhodoferax ferrireducens T118 hypothetical protein YP_525376.1 4619591 D 338969 CDS YP_525377.1 89902906 3961848 4620239..4620949 1 NC_007908.1 hypothetical protein 4620949 3961848 Rfer_4150 Rhodoferax ferrireducens T118 hypothetical protein YP_525377.1 4620239 D 338969 CDS YP_525378.1 89902907 3961849 4621643..4622827 1 NC_007908.1 NnrS 4622827 3961849 Rfer_4151 Rhodoferax ferrireducens T118 NnrS YP_525378.1 4621643 D 338969 CDS YP_525379.1 89902908 3961852 complement(4625723..4627147) 1 NC_007908.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 4627147 3961852 Rfer_4154 Rhodoferax ferrireducens T118 N-formimino-L-glutamate deiminase YP_525379.1 4625723 R 338969 CDS YP_525380.1 89902909 3961853 complement(4627137..4627937) 1 NC_007908.1 N-formylglutamate amidohydrolase 4627937 3961853 Rfer_4155 Rhodoferax ferrireducens T118 N-formylglutamate amidohydrolase YP_525380.1 4627137 R 338969 CDS YP_525381.1 89902910 3961854 complement(4628041..4628601) 1 NC_007908.1 hypothetical protein 4628601 3961854 Rfer_4156 Rhodoferax ferrireducens T118 hypothetical protein YP_525381.1 4628041 R 338969 CDS YP_525382.1 89902911 3961855 complement(4628598..4629308) 1 NC_007908.1 GntR family transcriptional regulator 4629308 3961855 Rfer_4157 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_525382.1 4628598 R 338969 CDS YP_525383.1 89902912 3961856 complement(4629310..4630074) 1 NC_007908.1 ABC transporter-like protein 4630074 3961856 Rfer_4158 Rhodoferax ferrireducens T118 ABC transporter-like protein YP_525383.1 4629310 R 338969 CDS YP_525384.1 89902913 3961857 complement(4630071..4630739) 1 NC_007908.1 amino acid ABC transporter permease 4630739 3961857 Rfer_4159 Rhodoferax ferrireducens T118 amino acid ABC transporter permease YP_525384.1 4630071 R 338969 CDS YP_525385.1 89902914 3961858 complement(4630757..4631500) 1 NC_007908.1 extracellular solute-binding protein 4631500 3961858 Rfer_4160 Rhodoferax ferrireducens T118 extracellular solute-binding protein YP_525385.1 4630757 R 338969 CDS YP_525386.1 89902915 3961859 complement(4631531..4632274) 1 NC_007908.1 IclR family transcriptional regulator 4632274 3961859 Rfer_4161 Rhodoferax ferrireducens T118 IclR family transcriptional regulator YP_525386.1 4631531 R 338969 CDS YP_525387.1 89902916 3961861 complement(4633312..4635030) 1 NC_007908.1 electron-transferring-flavoprotein dehydrogenase 4635030 3961861 Rfer_4163 Rhodoferax ferrireducens T118 electron-transferring-flavoprotein dehydrogenase YP_525387.1 4633312 R 338969 CDS YP_525388.1 89902917 3961862 complement(4635101..4635373) 1 NC_007908.1 putative aspartate 1-decarboxylase 4635373 3961862 Rfer_4164 Rhodoferax ferrireducens T118 putative aspartate 1-decarboxylase YP_525388.1 4635101 R 338969 CDS YP_525389.1 89902918 3961863 complement(4635577..4636509) 1 NC_007908.1 electron transfer flavoprotein subunit alpha 4636509 3961863 Rfer_4165 Rhodoferax ferrireducens T118 electron transfer flavoprotein subunit alpha YP_525389.1 4635577 R 338969 CDS YP_525390.1 89902919 3961864 complement(4636588..4637337) 1 NC_007908.1 electron transfer flavoprotein subunit beta 4637337 3961864 Rfer_4166 Rhodoferax ferrireducens T118 electron transfer flavoprotein subunit beta YP_525390.1 4636588 R 338969 CDS YP_525391.1 89902920 3961865 complement(4637513..4638676) 1 NC_007908.1 Alpha-methylacyl-CoA racemase 4638676 3961865 Rfer_4167 Rhodoferax ferrireducens T118 Alpha-methylacyl-CoA racemase YP_525391.1 4637513 R 338969 CDS YP_525392.1 89902921 3961866 complement(4638698..4639900) 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 4639900 3961866 Rfer_4168 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_525392.1 4638698 R 338969 CDS YP_525393.1 89902922 3961867 complement(4639912..4641063) 1 NC_007908.1 butyryl-CoA dehydrogenase 4641063 3961867 Rfer_4169 Rhodoferax ferrireducens T118 butyryl-CoA dehydrogenase YP_525393.1 4639912 R 338969 CDS YP_525394.1 89902923 3961868 complement(4641138..4641656) 1 NC_007908.1 MaoC-like protein dehydratase 4641656 3961868 Rfer_4170 Rhodoferax ferrireducens T118 MaoC-like protein dehydratase YP_525394.1 4641138 R 338969 CDS YP_525395.1 89902924 3961869 complement(4641696..4642613) 1 NC_007908.1 Citryl-CoA lyase 4642613 3961869 Rfer_4171 Rhodoferax ferrireducens T118 Citryl-CoA lyase YP_525395.1 4641696 R 338969 CDS YP_525396.1 89902925 3961872 4643745..4644419 1 NC_007908.1 tripartite ATP-independent periplasmic transporter DctQ 4644419 3961872 Rfer_4174 Rhodoferax ferrireducens T118 tripartite ATP-independent periplasmic transporter DctQ YP_525396.1 4643745 D 338969 CDS YP_525397.1 89902926 3961873 4644416..4645699 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 4645699 3961873 Rfer_4175 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_525397.1 4644416 D 338969 CDS YP_525398.1 89902927 3961893 4645914..4647191 1 NC_007908.1 major facilitator transporter 4647191 3961893 Rfer_4176 Rhodoferax ferrireducens T118 major facilitator transporter YP_525398.1 4645914 D 338969 CDS YP_525399.1 89902928 3961895 4648295..4649572 1 NC_007908.1 putative 4-hydroxybutyrate-CoA transferase/hydrolase 4649572 3961895 Rfer_4178 Rhodoferax ferrireducens T118 putative 4-hydroxybutyrate-CoA transferase/hydrolase YP_525399.1 4648295 D 338969 CDS YP_525400.1 89902929 3961896 4649601..4650509 1 NC_007908.1 citrate lyase 4650509 3961896 Rfer_4179 Rhodoferax ferrireducens T118 citrate lyase YP_525400.1 4649601 D 338969 CDS YP_525401.1 89902930 3961897 4650549..4651067 1 NC_007908.1 MaoC-like protein dehydratase 4651067 3961897 Rfer_4180 Rhodoferax ferrireducens T118 MaoC-like protein dehydratase YP_525401.1 4650549 D 338969 CDS YP_525402.1 89902931 3961898 4651142..4652293 1 NC_007908.1 butyryl-CoA dehydrogenase 4652293 3961898 Rfer_4181 Rhodoferax ferrireducens T118 butyryl-CoA dehydrogenase YP_525402.1 4651142 D 338969 CDS YP_525403.1 89902932 3961901 complement(4653467..4654462) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctP 4654462 3961901 Rfer_4184 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctP YP_525403.1 4653467 R 338969 CDS YP_525404.1 89902933 3961902 4654650..4655447 1 NC_007908.1 hypothetical protein 4655447 3961902 Rfer_4185 Rhodoferax ferrireducens T118 hypothetical protein YP_525404.1 4654650 D 338969 CDS YP_525405.1 89902934 3961903 4656316..4657071 1 NC_007908.1 GntR family transcriptional regulator 4657071 3961903 Rfer_4186 Rhodoferax ferrireducens T118 GntR family transcriptional regulator YP_525405.1 4656316 D 338969 CDS YP_525406.1 89902935 3961904 4657277..4657561 1 NC_007908.1 hypothetical protein 4657561 3961904 Rfer_4187 Rhodoferax ferrireducens T118 hypothetical protein YP_525406.1 4657277 D 338969 CDS YP_525407.1 89902936 3961905 4657712..4657957 1 NC_007908.1 hypothetical protein 4657957 3961905 Rfer_4188 Rhodoferax ferrireducens T118 hypothetical protein YP_525407.1 4657712 D 338969 CDS YP_525408.1 89902937 3961906 4658042..4659487 1 NC_007908.1 MmgE/PrpD 4659487 3961906 Rfer_4189 Rhodoferax ferrireducens T118 MmgE/PrpD YP_525408.1 4658042 D 338969 CDS YP_525409.1 89902938 3961907 4659495..4660730 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 4660730 3961907 Rfer_4190 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_525409.1 4659495 D 338969 CDS YP_525410.1 89902939 3961908 4660796..4661941 1 NC_007908.1 major facilitator transporter 4661941 3961908 Rfer_4191 Rhodoferax ferrireducens T118 major facilitator transporter YP_525410.1 4660796 D 338969 CDS YP_525411.1 89902940 3961909 complement(4662013..4662693) 1 NC_007908.1 hypothetical protein 4662693 3961909 Rfer_4192 Rhodoferax ferrireducens T118 hypothetical protein YP_525411.1 4662013 R 338969 CDS YP_525412.1 89902941 3961910 complement(4662716..4663396) 1 NC_007908.1 isochorismatase hydrolase 4663396 3961910 Rfer_4193 Rhodoferax ferrireducens T118 isochorismatase hydrolase YP_525412.1 4662716 R 338969 CDS YP_525413.1 89902942 3961911 complement(4663429..4664697) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctM 4664697 3961911 Rfer_4194 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctM YP_525413.1 4663429 R 338969 CDS YP_525414.1 89902943 3961912 complement(4664699..4665229) 1 NC_007908.1 tripartite ATP-independent periplasmic transporter DctQ 4665229 3961912 Rfer_4195 Rhodoferax ferrireducens T118 tripartite ATP-independent periplasmic transporter DctQ YP_525414.1 4664699 R 338969 CDS YP_525415.1 89902944 3961913 complement(4665237..4666238) 1 NC_007908.1 TRAP dicarboxylate transporter subunit DctP 4666238 3961913 Rfer_4196 Rhodoferax ferrireducens T118 TRAP dicarboxylate transporter subunit DctP YP_525415.1 4665237 R 338969 CDS YP_525416.1 89902945 3961914 complement(4666279..4667010) 1 NC_007908.1 hypothetical protein 4667010 3961914 Rfer_4197 Rhodoferax ferrireducens T118 hypothetical protein YP_525416.1 4666279 R 338969 CDS YP_525417.1 89902946 3961915 4667574..4668779 1 NC_007908.1 L-carnitine dehydratase/bile acid-inducible protein F 4668779 3961915 Rfer_4198 Rhodoferax ferrireducens T118 L-carnitine dehydratase/bile acid-inducible protein F YP_525417.1 4667574 D 338969 CDS YP_525418.1 89902947 3961916 4668790..4669716 1 NC_007908.1 pyruvate carboxyltransferase 4669716 3961916 Rfer_4199 Rhodoferax ferrireducens T118 pyruvate carboxyltransferase YP_525418.1 4668790 D 338969 CDS YP_525419.1 89902948 3961917 complement(4669903..4670397) 1 NC_007908.1 hypothetical protein 4670397 3961917 Rfer_4200 Rhodoferax ferrireducens T118 hypothetical protein YP_525419.1 4669903 R 338969 CDS YP_525420.1 89902949 3961919 4672081..4672914 1 NC_007908.1 IstB-like protein ATP-binding protein 4672914 3961919 Rfer_4202 Rhodoferax ferrireducens T118 IstB-like protein ATP-binding protein YP_525420.1 4672081 D 338969 CDS YP_525421.1 89902950 3961920 complement(4673315..4674475) 1 NC_007908.1 integrase 4674475 3961920 Rfer_4203 Rhodoferax ferrireducens T118 integrase YP_525421.1 4673315 R 338969 CDS YP_525422.1 89902951 3961921 complement(4674891..4676492) 1 NC_007908.1 AMP-dependent synthetase and ligase 4676492 3961921 Rfer_4204 Rhodoferax ferrireducens T118 AMP-dependent synthetase and ligase YP_525422.1 4674891 R 338969 CDS YP_525423.1 89902952 3961922 complement(4676519..4677760) 1 NC_007908.1 thiolase 4677760 3961922 Rfer_4205 Rhodoferax ferrireducens T118 thiolase YP_525423.1 4676519 R 338969 CDS YP_525424.1 89902953 3961923 complement(4677856..4678971) 1 NC_007908.1 saccharopine dehydrogenase 4678971 3961923 Rfer_4206 Rhodoferax ferrireducens T118 saccharopine dehydrogenase YP_525424.1 4677856 R 338969 CDS YP_525425.1 89902954 3961924 complement(4679014..4680255) 1 NC_007908.1 acyl-CoA dehydrogenase-like protein 4680255 3961924 Rfer_4207 Rhodoferax ferrireducens T118 acyl-CoA dehydrogenase-like protein YP_525425.1 4679014 R 338969 CDS YP_525426.1 89902955 3961925 4680475..4683159 1 NC_007908.1 ATP-dependent transcription regulator LuxR 4683159 3961925 Rfer_4208 Rhodoferax ferrireducens T118 ATP-dependent transcription regulator LuxR YP_525426.1 4680475 D 338969 CDS YP_525427.1 89902956 3961926 4683276..4684550 1 NC_007908.1 hypothetical protein 4684550 3961926 Rfer_4209 Rhodoferax ferrireducens T118 hypothetical protein YP_525427.1 4683276 D 338969 CDS YP_525428.1 89902957 3961927 complement(4684754..4685380) 1 NC_007908.1 hypothetical protein 4685380 3961927 Rfer_4210 Rhodoferax ferrireducens T118 hypothetical protein YP_525428.1 4684754 R 338969 CDS YP_525429.1 89902958 3961928 4685691..4687916 1 NC_007908.1 KAP P-loop 4687916 3961928 Rfer_4211 Rhodoferax ferrireducens T118 KAP P-loop YP_525429.1 4685691 D 338969 CDS YP_525430.1 89902959 3961929 4688277..4688777 1 NC_007908.1 transposase 4688777 3961929 Rfer_4212 Rhodoferax ferrireducens T118 transposase YP_525430.1 4688277 D 338969 CDS YP_525431.1 89902960 3961930 complement(4688764..4689246) 1 NC_007908.1 hypothetical protein 4689246 3961930 Rfer_4213 Rhodoferax ferrireducens T118 hypothetical protein YP_525431.1 4688764 R 338969 CDS YP_525432.1 89902961 3961931 complement(4689265..4689765) 1 NC_007908.1 hypothetical protein 4689765 3961931 Rfer_4214 Rhodoferax ferrireducens T118 hypothetical protein YP_525432.1 4689265 R 338969 CDS YP_525433.1 89902962 3961932 complement(4689974..4691101) 1 NC_007908.1 hypothetical protein 4691101 3961932 Rfer_4215 Rhodoferax ferrireducens T118 hypothetical protein YP_525433.1 4689974 R 338969 CDS YP_525434.1 89902963 3961934 complement(4691744..4692142) 1 NC_007908.1 50S ribosomal protein L17 4692142 3961934 Rfer_4216 Rhodoferax ferrireducens T118 50S ribosomal protein L17 YP_525434.1 4691744 R 338969 CDS YP_525435.1 89902964 3961935 complement(4692224..4693213) 1 NC_007908.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 4693213 3961935 Rfer_4217 Rhodoferax ferrireducens T118 DNA-directed RNA polymerase subunit alpha YP_525435.1 4692224 R 338969 CDS YP_525436.1 89902965 3961936 complement(4693331..4693954) 1 NC_007908.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 4693954 rpsD 3961936 rpsD Rhodoferax ferrireducens T118 30S ribosomal protein S4 YP_525436.1 4693331 R 338969 CDS YP_525437.1 89902966 3961937 complement(4694050..4694454) 1 NC_007908.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 4694454 3961937 Rfer_4219 Rhodoferax ferrireducens T118 30S ribosomal protein S11 YP_525437.1 4694050 R 338969 CDS YP_525438.1 89902967 3961938 complement(4694474..4694839) 1 NC_007908.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 4694839 rpsM 3961938 rpsM Rhodoferax ferrireducens T118 30S ribosomal protein S13 YP_525438.1 4694474 R 338969 CDS YP_525439.1 89902968 3961939 complement(4694864..4694995) 1 NC_007908.1 50S ribosomal protein L36 4694995 3961939 Rfer_4221 Rhodoferax ferrireducens T118 50S ribosomal protein L36 YP_525439.1 4694864 R 338969 CDS YP_525440.1 89902969 3961940 complement(4695043..4695261) 1 NC_007908.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4695261 infA 3961940 infA Rhodoferax ferrireducens T118 translation initiation factor IF-1 YP_525440.1 4695043 R 338969 CDS YP_525441.1 89902970 3961941 complement(4695276..4696586) 1 NC_007908.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 4696586 secY 3961941 secY Rhodoferax ferrireducens T118 preprotein translocase subunit SecY YP_525441.1 4695276 R 338969 CDS YP_525442.1 89902971 3961942 complement(4696611..4697042) 1 NC_007908.1 50S ribosomal protein L15 4697042 3961942 Rfer_4224 Rhodoferax ferrireducens T118 50S ribosomal protein L15 YP_525442.1 4696611 R 338969 CDS YP_525443.1 89902972 3961943 complement(4697053..4697235) 1 NC_007908.1 50S ribosomal protein L30 4697235 3961943 Rfer_4225 Rhodoferax ferrireducens T118 50S ribosomal protein L30 YP_525443.1 4697053 R 338969 CDS YP_525444.1 89902973 3961944 complement(4697250..4697774) 1 NC_007908.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 4697774 rpsE 3961944 rpsE Rhodoferax ferrireducens T118 30S ribosomal protein S5 YP_525444.1 4697250 R 338969 CDS YP_525445.1 89902974 3961945 complement(4697792..4698157) 1 NC_007908.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 4698157 rplR 3961945 rplR Rhodoferax ferrireducens T118 50S ribosomal protein L18 YP_525445.1 4697792 R 338969 CDS YP_525446.1 89902975 3961946 complement(4698169..4698702) 1 NC_007908.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 4698702 rplF 3961946 rplF Rhodoferax ferrireducens T118 50S ribosomal protein L6 YP_525446.1 4698169 R 338969 CDS YP_525447.1 89902976 3961947 complement(4698729..4699124) 1 NC_007908.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 4699124 rpsH 3961947 rpsH Rhodoferax ferrireducens T118 30S ribosomal protein S8 YP_525447.1 4698729 R 338969 CDS YP_525448.1 89902977 3961948 complement(4699143..4699439) 1 NC_007908.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 4699439 rpsN 3961948 rpsN Rhodoferax ferrireducens T118 30S ribosomal protein S14 YP_525448.1 4699143 R 338969 CDS YP_525449.1 89902978 3961949 complement(4699457..4699996) 1 NC_007908.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 4699996 rplE 3961949 rplE Rhodoferax ferrireducens T118 50S ribosomal protein L5 YP_525449.1 4699457 R 338969 CDS YP_525450.1 89902979 3961970 complement(4699999..4700319) 1 NC_007908.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 4700319 rplX 3961970 rplX Rhodoferax ferrireducens T118 50S ribosomal protein L24 YP_525450.1 4699999 R 338969 CDS YP_525451.1 89902980 3961971 complement(4700329..4700697) 1 NC_007908.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 4700697 rplN 3961971 rplN Rhodoferax ferrireducens T118 50S ribosomal protein L14 YP_525451.1 4700329 R 338969 CDS YP_525452.1 89902981 3961972 4701545..4701967 1 NC_007908.1 RNA-binding region RNP-1 4701967 3961972 Rfer_4234 Rhodoferax ferrireducens T118 RNA-binding region RNP-1 YP_525452.1 4701545 D 338969 CDS YP_525453.1 89902982 3961973 complement(4702314..4702919) 1 NC_007908.1 hypothetical protein 4702919 3961973 Rfer_4235 Rhodoferax ferrireducens T118 hypothetical protein YP_525453.1 4702314 R 338969 CDS YP_525454.1 89902983 3961974 complement(4702919..4703476) 1 NC_007908.1 phosphatase kdsC 4703476 3961974 Rfer_4236 Rhodoferax ferrireducens T118 phosphatase kdsC YP_525454.1 4702919 R 338969 CDS YP_525455.1 89902984 3961975 complement(4703476..4704477) 1 NC_007908.1 KpsF/GutQ family protein 4704477 3961975 Rfer_4237 Rhodoferax ferrireducens T118 KpsF/GutQ family protein YP_525455.1 4703476 R 338969 CDS YP_525456.1 89902985 3961976 4704535..4706505 1 NC_007908.1 sodium/hydrogen exchanger 4706505 3961976 Rfer_4238 Rhodoferax ferrireducens T118 sodium/hydrogen exchanger YP_525456.1 4704535 D 338969 CDS YP_525457.1 89902986 3961977 4706543..4707127 1 NC_007908.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 4707127 3961977 Rfer_4239 Rhodoferax ferrireducens T118 adenine phosphoribosyltransferase YP_525457.1 4706543 D 338969 CDS YP_525458.1 89902987 3961978 complement(4707143..4707865) 1 NC_007908.1 hypothetical protein 4707865 3961978 Rfer_4240 Rhodoferax ferrireducens T118 hypothetical protein YP_525458.1 4707143 R 338969 CDS YP_525459.1 89902988 3961979 complement(4707975..4709384) 1 NC_007908.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4709384 trmE 3961979 trmE Rhodoferax ferrireducens T118 tRNA modification GTPase TrmE YP_525459.1 4707975 R 338969 CDS YP_525460.1 89902989 3961980 complement(4709438..4711153) 1 NC_007908.1 60 kDa inner membrane insertion protein 4711153 3961980 Rfer_4242 Rhodoferax ferrireducens T118 60 kDa inner membrane insertion protein YP_525460.1 4709438 R 338969 CDS YP_525461.1 89902990 3961981 complement(4711150..4711434) 1 NC_007908.1 hypothetical protein 4711434 3961981 Rfer_4243 Rhodoferax ferrireducens T118 hypothetical protein YP_525461.1 4711150 R 338969 CDS YP_525462.1 89902991 3961982 complement(4711431..4711841) 1 NC_007908.1 hypothetical protein 4711841 3961982 Rfer_4244 Rhodoferax ferrireducens T118 hypothetical protein YP_525462.1 4711431 R 338969 CDS YP_525463.1 89902992 3961983 complement(4711934..4712068) 1 NC_007908.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4712068 rpmH 3961983 rpmH Rhodoferax ferrireducens T118 50S ribosomal protein L34 YP_525463.1 4711934 R 338969 CDS