-- dump date 20120504_160633 -- class Genbank::CDS -- table cds_note -- id note YP_005292071.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005292072.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_005292073.1 COG3243 Poly(3-hydroxyalkanoate) synthetase YP_005292075.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_005292077.1 COG0582 Integrase YP_005292078.1 COG1734 DnaK suppressor protein YP_005292079.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_005292080.1 COG0361 Translation initiation factor 1 (IF-1) YP_005292088.1 COG3209 Rhs family protein YP_005292091.1 COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain YP_005292092.1 COG0271 Stress-induced morphogen (activity unknown) YP_005292093.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_005292094.1 COG0475 Kef-type K+ transport systems, membrane components YP_005292095.1 COG3807 Uncharacterized protein conserved in bacteria YP_005292100.1 COG0621 2-methylthioadenine synthetase YP_005292101.1 COG5009 Membrane carboxypeptidase/penicillin-binding protein YP_005292102.1 COG2602 Beta-lactamase class D YP_005292103.1 COG2602 Beta-lactamase class D YP_005292105.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) YP_005292106.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_005292107.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) YP_005292108.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_005292109.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_005292110.1 COG0055 F0F1-type ATP synthase, beta subunit YP_005292111.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_005292112.1 COG1048 Aconitase A YP_005292113.1 COG3671 Predicted membrane protein YP_005292114.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_005292115.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_005292116.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_005292117.1 COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component YP_005292118.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_005292119.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_005292120.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_005292121.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_005292122.1 COG2944 Predicted transcriptional regulator YP_005292124.1 COG0500 SAM-dependent methyltransferases YP_005292125.1 COG3637 Opacity protein and related surface antigens YP_005292126.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_005292128.1 COG3451 Type IV secretory pathway, VirB4 components YP_005292130.1 COG0172 Seryl-tRNA synthetase YP_005292131.1 COG0805 Sec-independent protein secretion pathway component TatC YP_005292132.1 COG0477 Permeases of the major facilitator superfamily YP_005292134.1 COG1004 Predicted UDP-glucose 6-dehydrogenase YP_005292135.1 COG0587 DNA polymerase III, alpha subunit YP_005292139.1 COG0192 S-adenosylmethionine synthetase YP_005292140.1 COG0192 S-adenosylmethionine synthetase YP_005292141.1 COG0192 S-adenosylmethionine synthetase YP_005292142.1 COG0192 S-adenosylmethionine synthetase YP_005292143.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_005292144.1 COG0552 Signal recognition particle GTPase YP_005292145.1 COG2913 Small protein A (tmRNA-binding) YP_005292146.1 COG0333 Ribosomal protein L32 YP_005292147.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_005292149.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_005292150.1 COG0795 Predicted permeases YP_005292151.1 COG1077 Actin-like ATPase involved in cell morphogenesis YP_005292152.1 COG1792 Cell shape-determining protein YP_005292153.1 COG1396 Predicted transcriptional regulators YP_005292154.1 COG0194 Guanylate kinase YP_005292155.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005292158.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005292159.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_005292160.1 COG0236 Acyl carrier protein YP_005292161.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005292162.1 COG0468 RecA/RadA recombinase YP_005292164.1 COG0477 Permeases of the major facilitator superfamily YP_005292165.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005292166.1 COG0486 Predicted GTPase YP_005292167.1 COG2902 NAD-specific glutamate dehydrogenase YP_005292168.1 COG1426 Uncharacterized protein conserved in bacteria YP_005292169.1 COG0419 ATPase involved in DNA repair YP_005292170.1 COG3027 Uncharacterized protein conserved in bacteria YP_005292171.1 COG0477 Permeases of the major facilitator superfamily YP_005292175.1 COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold YP_005292177.1 COG1396 Predicted transcriptional regulators YP_005292178.1 COG0527 Aspartokinases YP_005292179.1 COG0211 Ribosomal protein L27 YP_005292180.1 COG0261 Ribosomal protein L21 YP_005292181.1 COG1267 Phosphatidylglycerophosphatase A and related proteins YP_005292182.1 COG1826 Sec-independent protein secretion pathway components YP_005292183.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component YP_005292184.1 COG0313 Predicted methyltransferases YP_005292187.1 COG5510 Predicted small secreted protein YP_005292191.1 COG0177 Predicted EndoIII-related endonuclease YP_005292192.1 COG0278 Glutaredoxin-related protein YP_005292193.1 COG0400 Predicted esterase YP_005292194.1 COG0112 Glycine/serine hydroxymethyltransferase YP_005292195.1 COG0320 Lipoate synthase YP_005292198.1 COG0319 Predicted metal-dependent hydrolase YP_005292199.1 COG1253 Hemolysins and related proteins containing CBS domains YP_005292200.1 COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance YP_005292201.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005292202.1 COG3202 ATP/ADP translocase YP_005292203.1 COG3243 Poly(3-hydroxyalkanoate) synthetase YP_005292213.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_005292216.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) YP_005292217.1 COG3346 Uncharacterized conserved protein YP_005292218.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_005292219.1 COG0237 Dephospho-CoA kinase YP_005292220.1 COG3494 Uncharacterized protein conserved in bacteria YP_005292221.1 COG3814 Uncharacterized protein conserved in bacteria YP_005292222.1 COG0328 Ribonuclease HI YP_005292223.1 COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_005292224.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_005292227.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005292228.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_005292230.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_005292231.1 COG2961 Protein involved in catabolism of external DNA YP_005292232.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005292233.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_005292234.1 COG1560 Lauroyl/myristoyl acyltransferase YP_005292235.1 COG1225 Peroxiredoxin YP_005292237.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005292238.1 COG0789 Predicted transcriptional regulators YP_005292239.1 COG1472 Beta-glucosidase-related glycosidases YP_005292240.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005292241.1 COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain YP_005292243.1 COG1138 Cytochrome c biogenesis factor YP_005292244.1 COG4536 Putative Mg2+ and Co2+ transporter CorB YP_005292246.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005292247.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component YP_005292248.1 COG0477 Permeases of the major facilitator superfamily YP_005292250.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005292252.1 COG1598 Uncharacterized conserved protein YP_005292253.1 COG0603 Predicted PP-loop superfamily ATPase YP_005292254.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins YP_005292255.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_005292260.1 COG1322 Uncharacterized protein conserved in bacteria YP_005292261.1 COG3475 LPS biosynthesis protein YP_005292262.1 COG3475 LPS biosynthesis protein YP_005292263.1 COG0525 Valyl-tRNA synthetase YP_005292264.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_005292265.1 COG0477 Permeases of the major facilitator superfamily YP_005292266.1 COG0125 Thymidylate kinase YP_005292267.1 COG0143 Methionyl-tRNA synthetase YP_005292268.1 COG0084 Mg-dependent DNase YP_005292269.1 COG2958 Uncharacterized protein conserved in bacteria YP_005292272.1 COG2958 Uncharacterized protein conserved in bacteria YP_005292275.1 COG0836 Mannose-1-phosphate guanylyltransferase YP_005292276.1 COG0266 Formamidopyrimidine-DNA glycosylase YP_005292277.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_005292278.1 COG0661 Predicted unusual protein kinase YP_005292281.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005292282.1 COG1160 Predicted GTPases YP_005292283.1 COG4095 Uncharacterized conserved protein YP_005292284.1 COG0708 Exonuclease III YP_005292286.1 COG1570 Exonuclease VII, large subunit YP_005292287.1 COG1452 Organic solvent tolerance protein OstA YP_005292288.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005292289.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_005292290.1 COG1278 Cold shock proteins YP_005292291.1 COG0513 Superfamily II DNA and RNA helicases YP_005292292.1 COG0477 Permeases of the major facilitator superfamily YP_005292293.1 COG0694 Thioredoxin-like proteins and domains YP_005292294.1 COG4574 Serine protease inhibitor ecotin YP_005292296.1 COG0206 Cell division GTPase YP_005292298.1 COG4118 Antitoxin of toxin-antitoxin stability system YP_005292299.1 COG0114 Fumarase YP_005292301.1 COG0566 rRNA methylases YP_005292302.1 COG0050 GTPases - translation elongation factors YP_005292304.1 COG0051 Ribosomal protein S10 YP_005292305.1 COG0087 Ribosomal protein L3 YP_005292306.1 COG0088 Ribosomal protein L4 YP_005292307.1 COG0089 Ribosomal protein L23 YP_005292308.1 COG0090 Ribosomal protein L2 YP_005292309.1 COG0185 Ribosomal protein S19 YP_005292310.1 COG0091 Ribosomal protein L22 YP_005292311.1 COG0092 Ribosomal protein S3 YP_005292312.1 COG0197 Ribosomal protein L16/L10E YP_005292313.1 COG0255 Ribosomal protein L29 YP_005292314.1 COG0186 Ribosomal protein S17 YP_005292315.1 COG0093 Ribosomal protein L14 YP_005292316.1 COG0198 Ribosomal protein L24 YP_005292317.1 COG0094 Ribosomal protein L5 YP_005292318.1 COG0199 Ribosomal protein S14 YP_005292319.1 COG0096 Ribosomal protein S8 YP_005292320.1 COG0097 Ribosomal protein L6P/L9E YP_005292321.1 COG0256 Ribosomal protein L18 YP_005292322.1 COG0098 Ribosomal protein S5 YP_005292323.1 COG1841 Ribosomal protein L30/L7E YP_005292324.1 COG0200 Ribosomal protein L15 YP_005292325.1 COG0201 Preprotein translocase subunit SecY YP_005292326.1 COG0563 Adenylate kinase and related kinases YP_005292327.1 COG0099 Ribosomal protein S13 YP_005292328.1 COG0100 Ribosomal protein S11 YP_005292329.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_005292330.1 COG0203 Ribosomal protein L17 YP_005292331.1 COG0268 Ribosomal protein S20 YP_005292333.1 COG0477 Permeases of the major facilitator superfamily YP_005292338.1 COG0477 Permeases of the major facilitator superfamily YP_005292339.1 COG0593 ATPase involved in DNA replication initiation YP_005292340.1 COG0628 Predicted permease YP_005292341.1 COG0576 Molecular chaperone GrpE (heat shock protein) YP_005292342.1 COG0689 RNase PH YP_005292343.1 COG1215 Glycosyltransferases, probably involved in cell wall biogenesis YP_005292345.1 COG0234 Co-chaperonin GroES (HSP10) YP_005292346.1 COG0459 Chaperonin GroEL (HSP60 family) YP_005292348.1 COG5342 Invasion protein B, involved in pathogenesis YP_005292349.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005292350.1 COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase YP_005292351.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components YP_005292353.1 COG0477 Permeases of the major facilitator superfamily YP_005292355.1 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) YP_005292356.1 COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit YP_005292358.1 COG1729 Uncharacterized protein conserved in bacteria YP_005292361.1 COG0060 Isoleucyl-tRNA synthetase YP_005292364.1 COG5590 Uncharacterized conserved protein YP_005292365.1 COG0828 Ribosomal protein S21 YP_005292367.1 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation YP_005292368.1 COG3173 Predicted aminoglycoside phosphotransferase YP_005292369.1 COG3173 Predicted aminoglycoside phosphotransferase YP_005292371.1 COG0598 Mg2+ and Co2+ transporters YP_005292374.1 COG1471 Ribosomal protein S4E YP_005292375.1 COG0666 FOG: Ankyrin repeat YP_005292377.1 COG0230 Ribosomal protein L34 YP_005292378.1 COG0292 Ribosomal protein L20 YP_005292379.1 COG0291 Ribosomal protein L35 YP_005292380.1 COG0602 Organic radical activating enzymes YP_005292381.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_005292382.1 COG0193 Peptidyl-tRNA hydrolase YP_005292384.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005292385.1 COG0012 Predicted GTPase, probable translation factor YP_005292386.1 COG1708 Predicted nucleotidyltransferases YP_005292388.1 COG0477 Permeases of the major facilitator superfamily YP_005292391.1 COG3621 Patatin YP_005292398.1 COG0593 ATPase involved in DNA replication initiation YP_005292399.1 COG0607 Rhodanese-related sulfurtransferase YP_005292400.1 COG2938 Uncharacterized conserved protein YP_005292401.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_005292402.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_005292403.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_005292404.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005292406.1 COG0655 Multimeric flavodoxin WrbA YP_005292407.1 COG0655 Multimeric flavodoxin WrbA YP_005292408.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit YP_005292409.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit YP_005292410.1 COG1200 RecG-like helicase YP_005292413.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_005292414.1 COG0221 Inorganic pyrophosphatase YP_005292415.1 COG2332 Cytochrome c-type biogenesis protein CcmE YP_005292416.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_005292417.1 COG0342 Preprotein translocase subunit SecD YP_005292418.1 COG1862 Preprotein translocase subunit YajC YP_005292420.1 COG4710 Predicted DNA-binding protein with an HTH domain YP_005292424.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005292426.1 COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) YP_005292427.1 COG0647 Predicted sugar phosphatases of the HAD superfamily YP_005292428.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005292429.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_005292430.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_005292431.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_005292432.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005292433.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_005292434.1 COG0666 FOG: Ankyrin repeat YP_005292441.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005292442.1 COG2169 Adenosine deaminase YP_005292443.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005292444.1 COG4912 Predicted DNA alkylation repair enzyme YP_005292445.1 COG2847 Uncharacterized protein conserved in bacteria YP_005292446.1 COG0322 Nuclease subunit of the excinuclease complex YP_005292448.1 COG0591 Na+/proline symporter YP_005292449.1 COG2001 Uncharacterized protein conserved in bacteria YP_005292450.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_005292452.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005292454.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005292456.1 COG1357 Uncharacterized low-complexity proteins YP_005292457.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_005292458.1 COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit YP_005292459.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases YP_005292464.1 COG2271 Sugar phosphate permease YP_005292467.1 COG3547 Transposase and inactivated derivatives YP_005292470.1 COG5304 Uncharacterized protein conserved in bacteria YP_005292472.1 COG0162 Tyrosyl-tRNA synthetase YP_005292473.1 COG1189 Predicted rRNA methylase YP_005292474.1 COG1959 Predicted transcriptional regulator YP_005292477.1 COG0779 Uncharacterized protein conserved in bacteria YP_005292478.1 COG0195 Transcription elongation factor YP_005292479.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_005292481.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_005292483.1 COG1381 Recombinational DNA repair protein (RecF pathway) YP_005292484.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_005292485.1 COG1066 Predicted ATP-dependent serine protease YP_005292486.1 COG0742 N6-adenine-specific methylase YP_005292487.1 COG1357 Uncharacterized low-complexity proteins YP_005292488.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_005292489.1 COG0814 Amino acid permeases YP_005292491.1 COG0814 Amino acid permeases YP_005292493.1 COG0305 Replicative DNA helicase YP_005292495.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_005292496.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_005292499.1 COG0113 Delta-aminolevulinic acid dehydratase YP_005292501.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_005292506.1 COG0714 MoxR-like ATPases YP_005292508.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005292509.1 COG1694 Predicted pyrophosphatase YP_005292513.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_005292514.1 COG0217 Uncharacterized conserved protein YP_005292517.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005292521.1 COG0338 Site-specific DNA methylase YP_005292523.1 COG0500 SAM-dependent methyltransferases YP_005292524.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_005292525.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_005292527.1 COG0349 Ribonuclease D YP_005292528.1 COG1723 Uncharacterized conserved protein YP_005292529.1 COG0354 Predicted aminomethyltransferase related to GcvT YP_005292531.1 COG0666 FOG: Ankyrin repeat YP_005292532.1 COG0642 Signal transduction histidine kinase YP_005292533.1 COG0642 Signal transduction histidine kinase YP_005292534.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF YP_005292535.1 COG0181 Porphobilinogen deaminase YP_005292542.1 COG1396 Predicted transcriptional regulators YP_005292543.1 COG0283 Cytidylate kinase YP_005292544.1 COG0539 Ribosomal protein S1 YP_005292545.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_005292546.1 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases YP_005292547.1 COG5628 Predicted acetyltransferase YP_005292549.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005292550.1 COG4804 Uncharacterized conserved protein YP_005292556.1 COG1959 Predicted transcriptional regulator YP_005292557.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005292558.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005292559.1 COG0822 NifU homolog involved in Fe-S cluster formation YP_005292560.1 COG0316 Uncharacterized conserved protein YP_005292562.1 COG0531 Amino acid transporters YP_005292563.1 COG0006 Xaa-Pro aminopeptidase YP_005292564.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_005292566.1 COG3202 ATP/ADP translocase YP_005292570.1 COG0477 Permeases of the major facilitator superfamily YP_005292572.1 COG1279 Lysine efflux permease YP_005292573.1 COG1587 Uroporphyrinogen-III synthase YP_005292575.1 COG2956 Predicted N-acetylglucosaminyl transferase YP_005292576.1 COG2945 Predicted hydrolase of the alpha/beta superfamily YP_005292577.1 COG3077 DNA-damage-inducible protein J YP_005292578.1 COG5622 Protein required for attachment to host cells YP_005292579.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005292580.1 COG0180 Tryptophanyl-tRNA synthetase YP_005292582.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005292587.1 COG3022 Uncharacterized protein conserved in bacteria YP_005292591.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005292592.1 COG0616 Periplasmic serine proteases (ClpP class) YP_005292593.1 COG1158 Transcription termination factor YP_005292594.1 COG0500 SAM-dependent methyltransferases YP_005292595.1 COG0608 Single-stranded DNA-specific exonuclease YP_005292596.1 COG0216 Protein chain release factor A YP_005292597.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_005292598.1 COG0290 Translation initiation factor 3 (IF-3) YP_005292599.1 COG5346 Predicted membrane protein YP_005292601.1 COG5449 Uncharacterized conserved protein YP_005292603.1 COG5448 Uncharacterized conserved protein YP_005292604.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_005292605.1 COG0605 Superoxide dismutase YP_005292606.1 COG0285 Folylpolyglutamate synthase YP_005292607.1 COG1268 Uncharacterized conserved protein YP_005292608.1 COG4285 Uncharacterized conserved protein YP_005292609.1 COG0625 Glutathione S-transferase YP_005292610.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_005292612.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases YP_005292615.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005292616.1 COG1496 Uncharacterized conserved protein YP_005292617.1 COG0174 Glutamine synthetase YP_005292618.1 COG1295 Predicted membrane protein YP_005292619.1 COG1396 Predicted transcriptional regulators YP_005292620.1 COG0460 Homoserine dehydrogenase YP_005292621.1 COG3202 ATP/ADP translocase YP_005292622.1 COG0130 Pseudouridine synthase YP_005292623.1 COG0184 Ribosomal protein S15P/S13E YP_005292624.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_005292625.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_005292626.1 COG5375 Uncharacterized protein conserved in bacteria YP_005292627.1 COG1934 Uncharacterized protein conserved in bacteria YP_005292628.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_005292629.1 COG1109 Phosphomannomutase YP_005292631.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005292632.1 COG0516 IMP dehydrogenase/GMP reductase YP_005292636.1 COG1357 Uncharacterized low-complexity proteins YP_005292637.1 COG0208 Ribonucleotide reductase, beta subunit YP_005292639.1 COG0209 Ribonucleotide reductase, alpha subunit YP_005292642.1 COG5430 Uncharacterized secreted protein YP_005292644.1 COG0045 Succinyl-CoA synthetase, beta subunit YP_005292645.1 COG3121 P pilus assembly protein, chaperone PapD YP_005292647.1 COG0492 Thioredoxin reductase YP_005292648.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_005292649.1 COG1544 Ribosome-associated protein Y (PSrp-1) YP_005292657.1 COG0466 ATP-dependent Lon protease, bacterial type YP_005292658.1 COG1171 Threonine dehydratase YP_005292661.1 COG0210 Superfamily I DNA and RNA helicases YP_005292662.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005292663.1 COG1012 NAD-dependent aldehyde dehydrogenases YP_005292664.1 COG0492 Thioredoxin reductase YP_005292665.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005292666.1 COG0679 Predicted permeases YP_005292667.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_005292668.1 COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily YP_005292669.1 COG0061 Predicted sugar kinase YP_005292675.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_005292676.1 COG1714 Predicted membrane protein/domain YP_005292677.1 COG1238 Predicted membrane protein YP_005292678.1 COG0858 Ribosome-binding factor A YP_005292679.1 COG1835 Predicted acyltransferases YP_005292680.1 COG1835 Predicted acyltransferases YP_005292681.1 COG4395 Uncharacterized protein conserved in bacteria YP_005292682.1 COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases YP_005292685.1 COG2002 Regulators of stationary/sporulation gene expression YP_005292686.1 COG0045 Succinyl-CoA synthetase, beta subunit YP_005292687.1 COG0074 Succinyl-CoA synthetase, alpha subunit YP_005292688.1 COG1651 Protein-disulfide isomerase YP_005292689.1 COG0691 tmRNA-binding protein YP_005292690.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_005292691.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase YP_005292692.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005292693.1 COG0642 Signal transduction histidine kinase YP_005292694.1 COG0020 Undecaprenyl pyrophosphate synthase YP_005292695.1 COG0575 CDP-diglyceride synthetase YP_005292696.1 COG2919 Septum formation initiator YP_005292697.1 COG0349 Ribonuclease D YP_005292699.1 COG0495 Leucyl-tRNA synthetase YP_005292703.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_005292704.1 COG0073 EMAP domain YP_005292705.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_005292706.1 COG0621 2-methylthioadenine synthetase YP_005292707.1 COG0253 Diaminopimelate epimerase YP_005292711.1 COG0438 Glycosyltransferase YP_005292713.1 COG0841 Cation/multidrug efflux pump YP_005292714.1 COG0841 Cation/multidrug efflux pump YP_005292715.1 COG0841 Cation/multidrug efflux pump YP_005292716.1 COG0841 Cation/multidrug efflux pump YP_005292717.1 COG0841 Cation/multidrug efflux pump YP_005292723.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_005292724.1 COG0772 Bacterial cell division membrane protein YP_005292725.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_005292727.1 COG0597 Lipoprotein signal peptidase YP_005292728.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005292729.1 COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 YP_005292730.1 COG0110 Acetyltransferase (isoleucine patch superfamily) YP_005292731.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 YP_005292732.1 COG2071 Predicted glutamine amidotransferases YP_005292734.1 COG2887 RecB family exonuclease YP_005292735.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF YP_005292737.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005292738.1 COG0756 dUTPase YP_005292739.1 COG0616 Periplasmic serine proteases (ClpP class) YP_005292740.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005292741.1 COG3485 Protocatechuate 3,4-dioxygenase beta subunit YP_005292742.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 YP_005292744.1 COG0672 High-affinity Fe2+/Pb2+ permease YP_005292745.1 COG2917 Intracellular septation protein A YP_005292746.1 COG2823 Predicted periplasmic or secreted lipoprotein YP_005292747.1 COG0797 Lipoproteins YP_005292748.1 COG1686 D-alanyl-D-alanine carboxypeptidase YP_005292749.1 COG0477 Permeases of the major facilitator superfamily YP_005292750.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005292751.1 COG2255 Holliday junction resolvasome, helicase subunit YP_005292754.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_005292756.1 COG3177 Uncharacterized conserved protein YP_005292757.1 COG0442 Prolyl-tRNA synthetase YP_005292758.1 COG0302 GTP cyclohydrolase I YP_005292762.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_005292763.1 COG0504 CTP synthase (UTP-ammonia lyase) YP_005292764.1 COG3202 ATP/ADP translocase YP_005292765.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005292766.1 COG0666 FOG: Ankyrin repeat YP_005292767.1 COG0039 Malate/lactate dehydrogenases YP_005292770.1 COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components YP_005292772.1 COG0541 Signal recognition particle GTPase YP_005292776.1 COG0477 Permeases of the major facilitator superfamily YP_005292777.1 COG2002 Regulators of stationary/sporulation gene expression YP_005292778.1 COG4374 Uncharacterized protein conserved in bacteria YP_005292781.1 COG0281 Malic enzyme YP_005292782.1 COG0679 Predicted permeases YP_005292783.1 COG1384 Lysyl-tRNA synthetase (class I) YP_005292784.1 COG1495 Disulfide bond formation protein DsbB YP_005292787.1 COG0666 FOG: Ankyrin repeat YP_005292789.1 COG1101 ABC-type uncharacterized transport system, ATPase component YP_005292790.1 COG4120 ABC-type uncharacterized transport system, permease component YP_005292791.1 COG2984 ABC-type uncharacterized transport system, periplasmic component YP_005292792.1 COG3023 Negative regulator of beta-lactamase expression YP_005292794.1 COG0815 Apolipoprotein N-acyltransferase YP_005292795.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_005292798.1 COG4974 Site-specific recombinase XerD YP_005292799.1 COG4765 Uncharacterized protein conserved in bacteria YP_005292800.1 COG3307 Lipid A core - O-antigen ligase and related enzymes YP_005292801.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_005292802.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_005292803.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_005292804.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_005292805.1 COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit YP_005292806.1 COG0759 Uncharacterized conserved protein YP_005292808.1 COG2350 Uncharacterized protein conserved in bacteria YP_005292809.1 COG2094 3-methyladenine DNA glycosylase YP_005292810.1 COG5304 Uncharacterized protein conserved in bacteria YP_005292811.1 COG1722 Exonuclease VII small subunit YP_005292813.1 COG0806 RimM protein, required for 16S rRNA processing YP_005292814.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis YP_005292815.1 COG0457 FOG: TPR repeat YP_005292817.1 COG1533 DNA repair photolyase YP_005292818.1 COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) YP_005292819.1 COG0522 Ribosomal protein S4 and related proteins YP_005292823.1 COG0438 Glycosyltransferase YP_005292824.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005292826.1 COG0845 Membrane-fusion protein YP_005292827.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005292828.1 COG0500 SAM-dependent methyltransferases YP_005292830.1 COG0381 UDP-N-acetylglucosamine 2-epimerase YP_005292831.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases YP_005292832.1 COG1091 dTDP-4-dehydrorhamnose reductase YP_005292834.1 COG3093 Plasmid maintenance system antidote protein YP_005292835.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_005292836.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_005292837.1 COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005292838.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005292839.1 COG0450 Peroxiredoxin YP_005292840.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_005292841.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_005292842.1 COG0550 Topoisomerase IA YP_005292843.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005292847.1 COG1965 Protein implicated in iron transport, frataxin homolog YP_005292848.1 COG1559 Predicted periplasmic solute-binding protein YP_005292850.1 COG0763 Lipid A disaccharide synthetase YP_005292851.1 COG5464 Uncharacterized conserved protein YP_005292854.1 COG0606 Predicted ATPase with chaperone activity YP_005292855.1 COG0606 Predicted ATPase with chaperone activity YP_005292857.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_005292858.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_005292861.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_005292862.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_005292863.1 COG4618 ABC-type protease/lipase transport system, ATPase and permease components YP_005292864.1 COG0845 Membrane-fusion protein YP_005292865.1 COG0477 Permeases of the major facilitator superfamily YP_005292866.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005292869.1 COG0848 Biopolymer transport protein YP_005292870.1 COG0811 Biopolymer transport proteins YP_005292876.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005292877.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005292878.1 COG0124 Histidyl-tRNA synthetase YP_005292879.1 COG0531 Amino acid transporters YP_005292881.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_005292882.1 COG0457 FOG: TPR repeat YP_005292883.1 COG3175 Cytochrome oxidase assembly factor YP_005292884.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005292885.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_005292886.1 COG1351 Predicted alternative thymidylate synthase YP_005292887.1 COG1451 Predicted metal-dependent hydrolase YP_005292888.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005292889.1 COG0698 Ribose 5-phosphate isomerase RpiB YP_005292890.1 COG0249 Mismatch repair ATPase (MutS family) YP_005292891.1 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase YP_005292899.1 COG0248 Exopolyphosphatase YP_005292900.1 COG3505 Type IV secretory pathway, VirD4 components YP_005292901.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005292902.1 COG2948 Type IV secretory pathway, VirB10 components YP_005292903.1 COG3504 Type IV secretory pathway, VirB9 components YP_005292904.1 COG3736 Type IV secretory pathway, component VirB8 YP_005292906.1 COG3736 Type IV secretory pathway, component VirB8 YP_005292907.1 COG3504 Type IV secretory pathway, VirB9 components YP_005292908.1 COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit YP_005292909.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005292910.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005292912.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain YP_005292913.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005292914.1 COG1770 Protease II YP_005292915.1 COG0772 Bacterial cell division membrane protein YP_005292916.1 COG0477 Permeases of the major facilitator superfamily YP_005292917.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005292920.1 COG3093 Plasmid maintenance system antidote protein YP_005292923.1 COG0481 Membrane GTPase LepA YP_005292924.1 COG1186 Protein chain release factor B YP_005292925.1 COG4804 Uncharacterized conserved protein YP_005292926.1 COG4804 Uncharacterized conserved protein YP_005292928.1 COG0071 Molecular chaperone (small heat shock protein) YP_005292929.1 COG3067 Na+/H+ antiporter YP_005292930.1 COG2857 Cytochrome c1 YP_005292932.1 COG1290 Cytochrome b subunit of the bc complex YP_005292933.1 COG0723 Rieske Fe-S protein YP_005292936.1 COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter YP_005292937.1 COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit YP_005292938.1 COG0473 Isocitrate/isopropylmalate dehydrogenase YP_005292939.1 COG2825 Outer membrane protein YP_005292943.1 COG1217 Predicted membrane GTPase involved in stress response YP_005292944.1 COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit YP_005292945.1 COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit YP_005292946.1 COG0708 Exonuclease III YP_005292947.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005292948.1 COG1612 Uncharacterized protein required for cytochrome oxidase assembly YP_005292949.1 COG1530 Ribonucleases G and E YP_005292951.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_005292953.1 COG3474 Cytochrome c2 YP_005292955.1 COG0849 Actin-like ATPase involved in cell division YP_005292956.1 COG1589 Cell division septal protein YP_005292957.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_005292958.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_005292959.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_005292960.1 COG2200 FOG: EAL domain YP_005292961.1 COG0271 Stress-induced morphogen (activity unknown) YP_005292965.1 COG1566 Multidrug resistance efflux pump YP_005292966.1 COG1183 Phosphatidylserine synthase YP_005292967.1 COG0688 Phosphatidylserine decarboxylase YP_005292969.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family YP_005292970.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_005292971.1 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain YP_005292972.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005292976.1 COG2173 D-alanyl-D-alanine dipeptidase YP_005292977.1 COG2173 D-alanyl-D-alanine dipeptidase YP_005292978.1 COG0103 Ribosomal protein S9 YP_005292979.1 COG0102 Ribosomal protein L13 YP_005292980.1 COG1520 FOG: WD40-like repeat YP_005292982.1 COG1729 Uncharacterized protein conserved in bacteria YP_005292983.1 COG0642 Signal transduction histidine kinase YP_005292984.1 COG0793 Periplasmic protease YP_005292985.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005292986.1 COG0666 FOG: Ankyrin repeat YP_005292988.1 COG3827 Uncharacterized protein conserved in bacteria YP_005292989.1 COG1538 Outer membrane protein YP_005292995.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005292996.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005292997.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005292999.1 COG0441 Threonyl-tRNA synthetase YP_005293001.1 COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase YP_005293002.1 COG0612 Predicted Zn-dependent peptidases YP_005293003.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005293004.1 COG4115 Uncharacterized protein conserved in bacteria YP_005293005.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005293006.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2 YP_005293007.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1 YP_005293009.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005293012.1 COG0666 FOG: Ankyrin repeat YP_005293013.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_005293014.1 COG1485 Predicted ATPase YP_005293015.1 COG4421 Capsular polysaccharide biosynthesis protein YP_005293016.1 COG0147 Anthranilate/para-aminobenzoate synthases component I YP_005293017.1 COG0223 Methionyl-tRNA formyltransferase YP_005293018.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005293023.1 COG1301 Na+/H+-dicarboxylate symporters YP_005293026.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005293029.1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components YP_005293030.1 COG0695 Glutaredoxin and related proteins YP_005293031.1 COG0556 Helicase subunit of the DNA excision repair complex YP_005293032.1 COG0164 Ribonuclease HII YP_005293033.1 COG1076 DnaJ-domain-containing proteins 1 YP_005293034.1 COG0443 Molecular chaperone YP_005293035.1 COG0633 Ferredoxin YP_005293037.1 COG2358 TRAP-type uncharacterized transport system, periplasmic component YP_005293038.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins YP_005293039.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_005293048.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_005293051.1 COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 YP_005293053.1 COG2941 Ubiquinone biosynthesis protein COQ7 YP_005293054.1 COG1466 DNA polymerase III, delta subunit YP_005293057.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005293058.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005293059.1 COG0443 Molecular chaperone YP_005293060.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_005293061.1 COG4572 Putative cation transport regulator YP_005293063.1 COG4105 DNA uptake lipoprotein YP_005293064.1 COG0497 ATPase involved in DNA repair YP_005293065.1 COG2317 Zn-dependent carboxypeptidase YP_005293066.1 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes YP_005293068.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_005293069.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_005293070.1 COG1324 Uncharacterized protein involved in tolerance to divalent cations YP_005293071.1 COG1301 Na+/H+-dicarboxylate symporters YP_005293075.1 COG0666 FOG: Ankyrin repeat YP_005293077.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_005293078.1 COG1505 Serine proteases of the peptidase family S9A YP_005293079.1 COG1505 Serine proteases of the peptidase family S9A YP_005293080.1 COG1505 Serine proteases of the peptidase family S9A YP_005293081.1 COG1505 Serine proteases of the peptidase family S9A YP_005293082.1 COG0541 Signal recognition particle GTPase YP_005293083.1 COG0470 ATPase involved in DNA replication YP_005293084.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005293085.1 COG0841 Cation/multidrug efflux pump YP_005293086.1 COG2155 Uncharacterized conserved protein YP_005293087.1 COG1385 Uncharacterized protein conserved in bacteria YP_005293088.1 COG5508 Uncharacterized conserved small protein YP_005293089.1 COG2867 Oligoketide cyclase/lipid transport protein YP_005293092.1 COG0293 23S rRNA methylase YP_005293093.1 COG0781 Transcription termination factor YP_005293094.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_005293095.1 COG4775 Outer membrane protein/protective antigen OMA87 YP_005293098.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005293099.1 COG0477 Permeases of the major facilitator superfamily YP_005293100.1 COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit YP_005293101.1 COG0528 Uridylate kinase YP_005293102.1 COG0233 Ribosome recycling factor YP_005293104.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_005293105.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_005293106.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_005293107.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005293108.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family YP_005293109.1 COG0289 Dihydrodipicolinate reductase YP_005293110.1 COG0670 Integral membrane protein, interacts with FtsH YP_005293112.1 COG0173 Aspartyl-tRNA synthetase YP_005293114.1 COG1192 ATPases involved in chromosome partitioning YP_005293115.1 COG0260 Leucyl aminopeptidase YP_005293116.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005293117.1 COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit YP_005293118.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005293119.1 COG0222 Ribosomal protein L7/L12 YP_005293120.1 COG0244 Ribosomal protein L10 YP_005293121.1 COG0081 Ribosomal protein L1 YP_005293122.1 COG0080 Ribosomal protein L11 YP_005293123.1 COG0250 Transcription antiterminator YP_005293124.1 COG0690 Preprotein translocase subunit SecE YP_005293125.1 COG0480 Translation elongation factors (GTPases) YP_005293126.1 COG0049 Ribosomal protein S7 YP_005293127.1 COG0048 Ribosomal protein S12 YP_005293128.1 COG0765 ABC-type amino acid transport system, permease component YP_005293129.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_005293130.1 COG2142 Succinate dehydrogenase, hydrophobic anchor subunit YP_005293132.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_005293133.1 COG1054 Predicted sulfurtransferase YP_005293134.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005293135.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005293136.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005293137.1 COG0489 ATPases involved in chromosome partitioning YP_005293138.1 COG3660 Predicted nucleoside-diphosphate-sugar epimerase YP_005293141.1 COG0565 rRNA methylase YP_005293142.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_005293143.1 COG1159 GTPase YP_005293144.1 COG0571 dsRNA-specific ribonuclease YP_005293145.1 COG0681 Signal peptidase I YP_005293146.1 COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit YP_005293147.1 COG0341 Preprotein translocase subunit SecF YP_005293148.1 COG3750 Uncharacterized protein conserved in bacteria YP_005293149.1 COG0335 Ribosomal protein L19 YP_005293150.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_005293153.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293154.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293155.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293156.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293157.1 COG3704 Type IV secretory pathway, VirB6 components YP_005293158.1 COG3451 Type IV secretory pathway, VirB4 components YP_005293159.1 COG3702 Type IV secretory pathway, VirB3 components YP_005293160.1 COG0548 Acetylglutamate kinase YP_005293161.1 COG0218 Predicted GTPase YP_005293162.1 COG0254 Ribosomal protein L31 YP_005293163.1 COG0227 Ribosomal protein L28 YP_005293165.1 COG0457 FOG: TPR repeat YP_005293168.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_005293169.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_005293170.1 COG0787 Alanine racemase YP_005293172.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_005293173.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_005293174.1 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component YP_005293175.1 COG2853 Surface lipoprotein YP_005293176.1 COG0457 FOG: TPR repeat YP_005293177.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005293179.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005293180.1 COG2121 Uncharacterized protein conserved in bacteria YP_005293181.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_005293184.1 COG0264 Translation elongation factor Ts YP_005293185.1 COG0052 Ribosomal protein S2 YP_005293186.1 COG0215 Cysteinyl-tRNA synthetase YP_005293187.1 COG2186 Transcriptional regulators YP_005293191.1 COG0477 Permeases of the major facilitator superfamily YP_005293192.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily YP_005293193.1 COG3047 Outer membrane protein W YP_005293194.1 COG1282 NAD/NADP transhydrogenase beta subunit YP_005293195.1 COG3820 Uncharacterized protein conserved in bacteria YP_005293196.1 COG2904 Uncharacterized protein conserved in bacteria YP_005293197.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005293198.1 COG1952 Preprotein translocase subunit SecB YP_005293199.1 COG0717 Deoxycytidine deaminase YP_005293200.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_005293203.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005293205.1 COG0018 Arginyl-tRNA synthetase YP_005293206.1 COG0232 dGTP triphosphohydrolase YP_005293207.1 COG0316 Uncharacterized conserved protein YP_005293210.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_005293212.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005293213.1 COG1475 Predicted transcriptional regulators YP_005293214.1 COG1192 ATPases involved in chromosome partitioning YP_005293215.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_005293216.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_005293217.1 COG0105 Nucleoside diphosphate kinase YP_005293218.1 COG2271 Sugar phosphate permease YP_005293219.1 COG3202 ATP/ADP translocase YP_005293220.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005293223.1 COG0500 SAM-dependent methyltransferases YP_005293225.1 COG0558 Phosphatidylglycerophosphate synthase YP_005293226.1 COG0706 Preprotein translocase subunit YidC YP_005293227.1 COG0668 Small-conductance mechanosensitive channel YP_005293229.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_005293230.1 COG1565 Uncharacterized conserved protein YP_005293232.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_005293233.1 COG0270 Site-specific DNA methylase YP_005293234.1 COG0270 Site-specific DNA methylase YP_005293235.1 COG0465 ATP-dependent Zn proteases YP_005293236.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_005293237.1 COG0359 Ribosomal protein L9 YP_005293238.1 COG0238 Ribosomal protein S18 YP_005293239.1 COG0360 Ribosomal protein S6 YP_005293240.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005293241.1 COG1398 Fatty-acid desaturase YP_005293242.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_005293244.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_005293246.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005293247.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005293254.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_005293255.1 COG1678 Putative transcriptional regulator YP_005293256.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_005293259.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_005293261.1 COG0262 Dihydrofolate reductase YP_005293262.1 COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C YP_005293263.1 COG1195 Recombinational DNA repair ATPase (RecF pathway) YP_005293265.1 COG0500 SAM-dependent methyltransferases YP_005293266.1 COG1329 Transcriptional regulators, similar to M. xanthus CarD YP_005293267.1 COG1651 Protein-disulfide isomerase YP_005293268.1 COG5336 Uncharacterized protein conserved in bacteria YP_005293269.1 COG0356 F0F1-type ATP synthase, subunit a YP_005293270.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_005293271.1 COG0711 F0F1-type ATP synthase, subunit b YP_005293272.1 COG0711 F0F1-type ATP synthase, subunit b YP_005293273.1 COG0457 FOG: TPR repeat YP_005293275.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005293280.1 COG0658 Predicted membrane metal-binding protein YP_005293282.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_005293283.1 COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_005293284.1 COG0802 Predicted ATPase or kinase YP_005293287.1 COG0042 tRNA-dihydrouridine synthase YP_005293290.1 COG1196 Chromosome segregation ATPases YP_005293291.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily YP_005293292.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily YP_005293294.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005293295.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_005293296.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_005293297.1 COG2337 Growth inhibitor YP_005293298.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases YP_005293299.1 COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component YP_005293300.1 COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component YP_005293301.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005293302.1 COG1806 Uncharacterized protein conserved in bacteria YP_005293303.1 COG0407 Uroporphyrinogen-III decarboxylase YP_005293304.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_005293305.1 COG1981 Predicted membrane protein YP_005293306.1 COG0408 Coproporphyrinogen III oxidase YP_005293307.1 COG0477 Permeases of the major facilitator superfamily YP_005293308.1 COG0457 FOG: TPR repeat YP_005293310.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005293311.1 COG0323 DNA mismatch repair enzyme (predicted ATPase) YP_005293312.1 COG0267 Ribosomal protein L33 YP_005293313.1 COG0228 Ribosomal protein S16 YP_005293314.1 COG3023 Negative regulator of beta-lactamase expression YP_005293315.1 COG0321 Lipoate-protein ligase B YP_005293316.1 COG1434 Uncharacterized conserved protein YP_005293318.1 COG3004 Na+/H+ antiporter YP_005293323.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_005293325.1 COG0732 Restriction endonuclease S subunits YP_005293326.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_005293328.1 COG2927 DNA polymerase III, chi subunit YP_005293329.1 COG0795 Predicted permeases YP_005293330.1 COG3041 Uncharacterized protein conserved in bacteria YP_005293331.1 COG3077 DNA-damage-inducible protein J YP_005293332.1 COG0671 Membrane-associated phospholipid phosphatase YP_005293333.1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I YP_005293334.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_005293335.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005293341.1 COG3577 Predicted aspartyl protease YP_005293342.1 COG0718 Uncharacterized protein conserved in bacteria YP_005293343.1 COG2812 DNA polymerase III, gamma/tau subunits YP_005293344.1 COG2834 Outer membrane lipoprotein-sorting protein YP_005293345.1 COG3288 NAD/NADP transhydrogenase alpha subunit YP_005293346.1 COG3288 NAD/NADP transhydrogenase alpha subunit YP_005293347.1 COG0782 Transcription elongation factor YP_005293348.1 COG0170 Dolichol kinase YP_005293349.1 COG0358 DNA primase (bacterial type) YP_005293350.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005293351.1 COG0101 Pseudouridylate synthase YP_005293352.1 COG0013 Alanyl-tRNA synthetase YP_005293354.1 COG1474 Cdc6-related protein, AAA superfamily ATPase YP_005293356.1 COG1636 Uncharacterized protein conserved in bacteria YP_005293357.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005293358.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain YP_005293359.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_005293360.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_005293361.1 COG0009 Putative translation factor (SUA5) YP_005293362.1 COG2890 Methylase of polypeptide chain release factors YP_005293365.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005293366.1 COG1573 Uracil-DNA glycosylase YP_005293368.1 COG0372 Citrate synthase YP_005293369.1 COG0536 Predicted GTPase YP_005293370.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_005293373.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_005293374.1 COG0326 Molecular chaperone, HSP90 family YP_005293375.1 COG1872 Uncharacterized conserved protein YP_005293377.1 COG3772 Phage-related lysozyme (muraminidase) YP_005293380.1 COG0629 Single-stranded DNA-binding protein YP_005293381.1 COG0178 Excinuclease ATPase subunit YP_005293385.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component YP_005293386.1 COG1881 Phospholipid-binding protein YP_005293387.1 COG4520 Surface antigen YP_005293388.1 COG0053 Predicted Co/Zn/Cd cation transporters YP_005293389.1 COG0590 Cytosine/adenosine deaminases YP_005293390.1 COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component YP_005293391.1 COG1146 Ferredoxin YP_005293392.1 COG3637 Opacity protein and related surface antigens YP_005293393.1 COG3637 Opacity protein and related surface antigens YP_005293395.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005293396.1 COG2003 DNA repair proteins YP_005293397.1 COG2003 DNA repair proteins YP_005293398.1 COG0024 Methionine aminopeptidase YP_005293399.1 COG1835 Predicted acyltransferases YP_005293400.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_005293401.1 COG1140 Nitrate reductase beta subunit