-- dump date 20120504_160706 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 392021000001 SEQ_END SEQ_END NC_009882.1 1257710 1257710 DR NC_009882.1; contig end 1257710..1257710 Rickettsia rickettsii str. 'Sheila Smith' YP_001494105.1 CDS A1G_00005 NC_009882.1 1 822 D COG1806 Uncharacterized protein conserved in bacteria; hypothetical protein 1..822 Rickettsia rickettsii str. 'Sheila Smith' 5648780 YP_001494106.1 CDS A1G_00010 NC_009882.1 1082 1399 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 1082..1399 Rickettsia rickettsii str. 'Sheila Smith' 5648254 YP_001494107.1 CDS A1G_00015 NC_009882.1 1409 2158 D COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; O-antigen export system ATP-binding protein RfbE 1409..2158 Rickettsia rickettsii str. 'Sheila Smith' 5648255 YP_001494108.1 CDS A1G_00020 NC_009882.1 2159 2935 D COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component; O-antigen export system permease protein RfbA 2159..2935 Rickettsia rickettsii str. 'Sheila Smith' 5648256 YP_001494109.1 CDS A1G_00025 NC_009882.1 2932 6033 D undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase 2932..6033 Rickettsia rickettsii str. 'Sheila Smith' 5648257 YP_001494110.1 CDS A1G_00030 NC_009882.1 6077 6316 R COG2337 Growth inhibitor; hypothetical protein complement(6077..6316) Rickettsia rickettsii str. 'Sheila Smith' 5648258 YP_001494111.1 CDS A1G_00035 NC_009882.1 6443 7237 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(6443..7237) Rickettsia rickettsii str. 'Sheila Smith' 5648259 YP_001494112.1 CDS fabZ NC_009882.1 7244 7681 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(7244..7681) Rickettsia rickettsii str. 'Sheila Smith' 5648260 YP_001494113.1 CDS lpxD NC_009882.1 7877 8914 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(7877..8914) Rickettsia rickettsii str. 'Sheila Smith' 5648261 YP_001494114.1 CDS A1G_00050 NC_009882.1 9243 9425 D hypothetical protein 9243..9425 Rickettsia rickettsii str. 'Sheila Smith' 5648262 YP_001494115.1 CDS A1G_00055 NC_009882.1 9627 9986 D COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; alpha/beta hydrolase superfamily esterase 9627..9986 Rickettsia rickettsii str. 'Sheila Smith' 5648263 YP_001494116.1 CDS A1G_00060 NC_009882.1 9965 10195 D COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; alpha/beta hydrolase superfamily esterase 9965..10195 Rickettsia rickettsii str. 'Sheila Smith' 5648484 YP_001494117.1 CDS A1G_00065 NC_009882.1 11497 11646 R COG1196 Chromosome segregation ATPases; ankyrin repeat-containing protein complement(11497..11646) Rickettsia rickettsii str. 'Sheila Smith' 5648485 YP_001494118.1 CDS A1G_00070 NC_009882.1 11702 11968 R ankyrin repeat-containing protein complement(11702..11968) Rickettsia rickettsii str. 'Sheila Smith' 5648486 YP_001494119.1 CDS A1G_00075 NC_009882.1 12022 12474 R ankyrin repeat-containing protein complement(12022..12474) Rickettsia rickettsii str. 'Sheila Smith' 5648487 YP_001494120.1 CDS A1G_00080 NC_009882.1 12813 13808 D COG0042 tRNA-dihydrouridine synthase; nifR3-like protein 12813..13808 Rickettsia rickettsii str. 'Sheila Smith' 5648489 YP_001494121.1 CDS A1G_00085 NC_009882.1 13826 14749 D hypothetical protein 13826..14749 Rickettsia rickettsii str. 'Sheila Smith' 5648490 YP_001494122.1 CDS A1G_00090 NC_009882.1 14835 14990 D hypothetical protein 14835..14990 Rickettsia rickettsii str. 'Sheila Smith' 5648491 YP_001494123.1 CDS A1G_00095 NC_009882.1 14998 15525 R COG0802 Predicted ATPase or kinase; hypothetical protein complement(14998..15525) Rickettsia rickettsii str. 'Sheila Smith' 5648492 YP_001494124.1 CDS A1G_00100 NC_009882.1 15513 16217 R COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; zinc/manganese ABC transporter substrate binding protein complement(15513..16217) Rickettsia rickettsii str. 'Sheila Smith' 5647643 YP_001494125.1 CDS A1G_00105 NC_009882.1 16463 17773 R COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; poly(A) polymerase complement(16463..17773) Rickettsia rickettsii str. 'Sheila Smith' 5647644 YP_001494126.1 CDS A1G_00110 NC_009882.1 18263 18487 R hypothetical protein complement(18263..18487) Rickettsia rickettsii str. 'Sheila Smith' 5647645 YP_001494127.1 CDS A1G_00115 NC_009882.1 18572 19300 R COG0658 Predicted membrane metal-binding protein; hypothetical protein complement(18572..19300) Rickettsia rickettsii str. 'Sheila Smith' 5647646 YP_001494128.1 CDS A1G_00120 NC_009882.1 19321 19467 R hypothetical protein complement(19321..19467) Rickettsia rickettsii str. 'Sheila Smith' 5647647 YP_001494129.1 CDS A1G_00125 NC_009882.1 19665 19781 D hypothetical protein 19665..19781 Rickettsia rickettsii str. 'Sheila Smith' 5647648 YP_001494130.1 CDS A1G_00130 NC_009882.1 20197 25797 D cell surface antigen 20197..25797 Rickettsia rickettsii str. 'Sheila Smith' 5647649 YP_001494131.1 CDS A1G_00135 NC_009882.1 26053 26181 D hypothetical protein 26053..26181 Rickettsia rickettsii str. 'Sheila Smith' 5647651 YP_001494132.1 CDS A1G_00140 NC_009882.1 26543 26668 D hypothetical protein 26543..26668 Rickettsia rickettsii str. 'Sheila Smith' 5647633 YP_001494133.1 CDS A1G_00145 NC_009882.1 27113 27853 D COG0740 Protease subunit of ATP-dependent Clp proteases; hypothetical protein 27113..27853 Rickettsia rickettsii str. 'Sheila Smith' 5647634 YP_001494134.1 CDS A1G_00150 NC_009882.1 27820 28053 D hypothetical protein 27820..28053 Rickettsia rickettsii str. 'Sheila Smith' 5647635 YP_001494135.1 CDS A1G_00155 NC_009882.1 28194 28376 D COG0457 FOG: TPR repeat; hypothetical protein 28194..28376 Rickettsia rickettsii str. 'Sheila Smith' 5647636 YP_001494136.1 CDS A1G_00160 NC_009882.1 28708 29202 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(28708..29202) Rickettsia rickettsii str. 'Sheila Smith' 5647637 YP_001494137.1 CDS A1G_00165 NC_009882.1 29202 29675 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' complement(29202..29675) Rickettsia rickettsii str. 'Sheila Smith' 5647638 YP_001494138.1 CDS A1G_00170 NC_009882.1 29694 29912 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(29694..29912) Rickettsia rickettsii str. 'Sheila Smith' 5647639 YP_001494139.1 CDS A1G_00175 NC_009882.1 30114 30842 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(30114..30842) Rickettsia rickettsii str. 'Sheila Smith' 5647640 YP_001494140.1 CDS A1G_00180 NC_009882.1 30847 31143 R COG5336 Uncharacterized protein conserved in bacteria; hypothetical protein complement(30847..31143) Rickettsia rickettsii str. 'Sheila Smith' 5647641 YP_001494141.1 CDS A1G_00185 NC_009882.1 31221 32054 R COG1651 Protein-disulfide isomerase; hypothetical protein complement(31221..32054) Rickettsia rickettsii str. 'Sheila Smith' 5647642 YP_001494142.1 CDS A1G_00190 NC_009882.1 32218 32739 D COG1329 Transcriptional regulators, similar to M. xanthus CarD; hypothetical protein 32218..32739 Rickettsia rickettsii str. 'Sheila Smith' 5648513 YP_001494143.1 CDS A1G_00195 NC_009882.1 32986 34590 R COG0500 SAM-dependent methyltransferases; hypothetical protein complement(32986..34590) Rickettsia rickettsii str. 'Sheila Smith' 5648514 YP_001494144.1 CDS recF NC_009882.1 34713 34922 D recombination protein F 34713..34922 Rickettsia rickettsii str. 'Sheila Smith' 5648515 YP_001494145.1 CDS recF NC_009882.1 35019 36101 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(35019..36101) Rickettsia rickettsii str. 'Sheila Smith' 5648516 YP_001494146.1 CDS A1G_00210 NC_009882.1 36125 36427 R COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C; hypothetical protein complement(36125..36427) Rickettsia rickettsii str. 'Sheila Smith' 5648517 YP_001494147.1 CDS A1G_00215 NC_009882.1 36763 37257 R COG0262 Dihydrofolate reductase; dihydrofolate reductase complement(36763..37257) Rickettsia rickettsii str. 'Sheila Smith' 5648518 YP_001494148.1 CDS A1G_00220 NC_009882.1 37254 37346 R hypothetical protein complement(37254..37346) Rickettsia rickettsii str. 'Sheila Smith' 5648519 YP_001494149.1 CDS A1G_00225 NC_009882.1 37589 38545 R COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; folate synthesis bifunctional protein complement(37589..38545) Rickettsia rickettsii str. 'Sheila Smith' 5648520 YP_001494150.1 CDS A1G_00230 NC_009882.1 39004 39663 R hypothetical protein complement(39004..39663) Rickettsia rickettsii str. 'Sheila Smith' 5648521 YP_001494151.1 CDS A1G_00235 NC_009882.1 39745 40044 R hypothetical protein complement(39745..40044) Rickettsia rickettsii str. 'Sheila Smith' 5648522 YP_001494152.1 CDS A1G_00240 NC_009882.1 40212 40607 R hypothetical protein complement(40212..40607) Rickettsia rickettsii str. 'Sheila Smith' 5648110 YP_001494153.1 CDS A1G_00245 NC_009882.1 41031 41303 R hypothetical protein complement(41031..41303) Rickettsia rickettsii str. 'Sheila Smith' 5648111 YP_001494154.1 CDS A1G_00250 NC_009882.1 41679 41966 R hypothetical protein complement(41679..41966) Rickettsia rickettsii str. 'Sheila Smith' 5648112 YP_001494155.1 CDS A1G_00255 NC_009882.1 42139 42315 R hypothetical protein complement(42139..42315) Rickettsia rickettsii str. 'Sheila Smith' 5648113 YP_001494156.1 CDS A1G_00260 NC_009882.1 42305 42460 R hypothetical protein complement(42305..42460) Rickettsia rickettsii str. 'Sheila Smith' 5648114 YP_001494157.1 CDS A1G_00265 NC_009882.1 42624 43199 D COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; Sco2 protein precursor 42624..43199 Rickettsia rickettsii str. 'Sheila Smith' 5648115 YP_001494158.1 CDS A1G_00270 NC_009882.1 43210 43779 R COG1678 Putative transcriptional regulator; hypothetical protein complement(43210..43779) Rickettsia rickettsii str. 'Sheila Smith' 5648116 YP_001494159.1 CDS A1G_00275 NC_009882.1 43845 44513 D COG1286 Uncharacterized membrane protein, required for colicin V production; hypothetical protein 43845..44513 Rickettsia rickettsii str. 'Sheila Smith' 5648117 YP_001494160.1 CDS A1G_00280 NC_009882.1 44904 45227 R hypothetical protein complement(44904..45227) Rickettsia rickettsii str. 'Sheila Smith' 5648118 YP_001494161.1 CDS A1G_00285 NC_009882.1 45075 45572 D hypothetical protein 45075..45572 Rickettsia rickettsii str. 'Sheila Smith' 5648119 YP_001494162.1 CDS A1G_00290 NC_009882.1 45538 45873 D hypothetical protein 45538..45873 Rickettsia rickettsii str. 'Sheila Smith' 5648152 YP_001494163.1 CDS A1G_00295 NC_009882.1 45976 46317 D cell surface antigen-like protein Sca10 45976..46317 Rickettsia rickettsii str. 'Sheila Smith' 5648153 YP_001494164.1 CDS A1G_00300 NC_009882.1 46551 47873 R hypothetical protein complement(46551..47873) Rickettsia rickettsii str. 'Sheila Smith' 5648154 YP_001494165.1 CDS A1G_00305 NC_009882.1 48035 48385 R hypothetical protein complement(48035..48385) Rickettsia rickettsii str. 'Sheila Smith' 5648155 YP_001494166.1 CDS A1G_00310 NC_009882.1 48367 48477 R hypothetical protein complement(48367..48477) Rickettsia rickettsii str. 'Sheila Smith' 5648156 YP_001494167.1 CDS A1G_00315 NC_009882.1 48542 48706 R hypothetical protein complement(48542..48706) Rickettsia rickettsii str. 'Sheila Smith' 5648157 YP_001494168.1 CDS A1G_00330 NC_009882.1 49192 49389 R hypothetical protein complement(49192..49389) Rickettsia rickettsii str. 'Sheila Smith' 5648158 YP_001494169.1 CDS A1G_00335 NC_009882.1 49422 49628 R hypothetical protein complement(49422..49628) Rickettsia rickettsii str. 'Sheila Smith' 5648159 YP_001494170.1 CDS A1G_00350 NC_009882.1 50702 50770 R hypothetical protein complement(50702..50770) Rickettsia rickettsii str. 'Sheila Smith' 5648160 YP_001494171.1 CDS A1G_00355 NC_009882.1 50842 51012 R hypothetical protein complement(50842..51012) Rickettsia rickettsii str. 'Sheila Smith' 5648161 YP_001494172.1 CDS A1G_00380 NC_009882.1 52570 55143 D COG0542 ATPases with chaperone activity, ATP-binding subunit; clpB protein 52570..55143 Rickettsia rickettsii str. 'Sheila Smith' 5648173 YP_001494173.1 CDS A1G_00385 NC_009882.1 55374 55865 R hypothetical protein complement(55374..55865) Rickettsia rickettsii str. 'Sheila Smith' 5648174 YP_001494174.1 CDS A1G_00390 NC_009882.1 55992 57026 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(55992..57026) Rickettsia rickettsii str. 'Sheila Smith' 5648175 YP_001494175.1 CDS A1G_00395 NC_009882.1 57210 58403 R COG1398 Fatty-acid desaturase; acyl-CoA desaturase 1 complement(57210..58403) Rickettsia rickettsii str. 'Sheila Smith' 5648176 YP_001494176.1 CDS A1G_00400 NC_009882.1 58682 58861 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; hypothetical protein complement(58682..58861) Rickettsia rickettsii str. 'Sheila Smith' 5648177 YP_001494177.1 CDS rpsF NC_009882.1 59348 59713 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 59348..59713 Rickettsia rickettsii str. 'Sheila Smith' 5648178 YP_001494178.1 CDS rpsR NC_009882.1 59738 60025 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 59738..60025 Rickettsia rickettsii str. 'Sheila Smith' 5648179 YP_001494179.1 CDS rplI NC_009882.1 60037 60552 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 60037..60552 Rickettsia rickettsii str. 'Sheila Smith' 5648180 YP_001494180.1 CDS A1G_00420 NC_009882.1 60854 62290 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; cell cycle protein MesJ 60854..62290 Rickettsia rickettsii str. 'Sheila Smith' 5648181 YP_001494181.1 CDS A1G_00425 NC_009882.1 62390 64303 D COG0465 ATP-dependent Zn proteases; cell division protein ftsH 62390..64303 Rickettsia rickettsii str. 'Sheila Smith' 5648182 YP_001494182.1 CDS A1G_00430 NC_009882.1 64387 64584 D COG0270 Site-specific DNA methylase; site-specific DNA methylase 64387..64584 Rickettsia rickettsii str. 'Sheila Smith' 5648770 YP_001494183.1 CDS A1G_00435 NC_009882.1 64572 64709 D COG0270 Site-specific DNA methylase; site-specific DNA methylase 64572..64709 Rickettsia rickettsii str. 'Sheila Smith' 5648771 YP_001494184.1 CDS sdhB NC_009882.1 65116 65901 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 65116..65901 Rickettsia rickettsii str. 'Sheila Smith' 5648772 YP_001494185.1 CDS A1G_00445 NC_009882.1 65976 66188 D hypothetical protein 65976..66188 Rickettsia rickettsii str. 'Sheila Smith' 5648773 YP_001494186.1 CDS A1G_00450 NC_009882.1 66185 66337 D hypothetical protein 66185..66337 Rickettsia rickettsii str. 'Sheila Smith' 5648774 YP_001494187.1 CDS A1G_00455 NC_009882.1 66462 67682 R COG1565 Uncharacterized conserved protein; hypothetical protein complement(66462..67682) Rickettsia rickettsii str. 'Sheila Smith' 5648775 YP_001494188.1 CDS A1G_00460 NC_009882.1 67661 68440 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(67661..68440) Rickettsia rickettsii str. 'Sheila Smith' 5648776 YP_001494189.1 CDS A1G_00465 NC_009882.1 68499 68681 D hypothetical protein 68499..68681 Rickettsia rickettsii str. 'Sheila Smith' 5648777 YP_001494190.1 CDS A1G_00470 NC_009882.1 68697 69848 D COG0668 Small-conductance mechanosensitive channel; hypothetical protein 68697..69848 Rickettsia rickettsii str. 'Sheila Smith' 5648778 YP_001494191.1 CDS A1G_00475 NC_009882.1 70040 71722 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 70040..71722 Rickettsia rickettsii str. 'Sheila Smith' 5648779 YP_001494192.1 CDS A1G_00480 NC_009882.1 71726 72271 D COG0558 Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 71726..72271 Rickettsia rickettsii str. 'Sheila Smith' 5648120 YP_001494193.1 CDS A1G_00485 NC_009882.1 72285 72845 D hypothetical protein 72285..72845 Rickettsia rickettsii str. 'Sheila Smith' 5648121 YP_001494194.1 CDS A1G_00490 NC_009882.1 73014 73397 R hypothetical protein complement(73014..73397) Rickettsia rickettsii str. 'Sheila Smith' 5648122 YP_001494195.1 CDS A1G_00505 NC_009882.1 74764 74871 D hypothetical protein 74764..74871 Rickettsia rickettsii str. 'Sheila Smith' 5648123 YP_001494196.1 CDS A1G_00510 NC_009882.1 74938 75612 R COG0242 N-formylmethionyl-tRNA deformylase; polypeptide deformylase complement(74938..75612) Rickettsia rickettsii str. 'Sheila Smith' 5648124 YP_001494197.1 CDS A1G_00515 NC_009882.1 75811 77307 D COG3202 ATP/ADP translocase; ADP,ATP carrier protein 75811..77307 Rickettsia rickettsii str. 'Sheila Smith' 5648125 YP_001494198.1 CDS A1G_00520 NC_009882.1 77503 78798 D COG2271 Sugar phosphate permease; glycerol-3-phosphate transporter 77503..78798 Rickettsia rickettsii str. 'Sheila Smith' 5648126 YP_001494199.1 CDS ndk NC_009882.1 78823 79245 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 78823..79245 Rickettsia rickettsii str. 'Sheila Smith' 5648127 YP_001494200.1 CDS A1G_00530 NC_009882.1 79249 81117 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 79249..81117 Rickettsia rickettsii str. 'Sheila Smith' 5648128 YP_001494201.1 CDS gidB NC_009882.1 81101 81676 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 81101..81676 Rickettsia rickettsii str. 'Sheila Smith' 5648129 YP_001494202.1 CDS A1G_00540 NC_009882.1 81673 82440 D COG1192 ATPases involved in chromosome partitioning; soj protein 81673..82440 Rickettsia rickettsii str. 'Sheila Smith' 5648400 YP_001494203.1 CDS A1G_00545 NC_009882.1 82427 83287 D COG1475 Predicted transcriptional regulators; stage 0 sporulation protein J 82427..83287 Rickettsia rickettsii str. 'Sheila Smith' 5648401 YP_001494204.1 CDS A1G_00550 NC_009882.1 83521 85188 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 83521..85188 Rickettsia rickettsii str. 'Sheila Smith' 5648402 YP_001494205.1 CDS A1G_00555 NC_009882.1 85191 85508 D hypothetical protein 85191..85508 Rickettsia rickettsii str. 'Sheila Smith' 5648403 YP_001494206.1 CDS A1G_00560 NC_009882.1 85544 86368 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 85544..86368 Rickettsia rickettsii str. 'Sheila Smith' 5648404 YP_001494207.1 CDS A1G_00565 NC_009882.1 87176 87400 D hypothetical protein 87176..87400 Rickettsia rickettsii str. 'Sheila Smith' 5648405 YP_001494208.1 CDS A1G_00570 NC_009882.1 87774 87914 D hypothetical protein 87774..87914 Rickettsia rickettsii str. 'Sheila Smith' 5648406 YP_001494209.1 CDS A1G_00575 NC_009882.1 88012 88344 R COG0316 Uncharacterized conserved protein; Iron-sulfur cluster assembly accessory protein complement(88012..88344) Rickettsia rickettsii str. 'Sheila Smith' 5648407 YP_001494210.1 CDS A1G_00580 NC_009882.1 88562 89716 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 88562..89716 Rickettsia rickettsii str. 'Sheila Smith' 5648408 YP_001494211.1 CDS argS NC_009882.1 89830 91560 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 89830..91560 Rickettsia rickettsii str. 'Sheila Smith' 5648409 YP_001494212.1 CDS A1G_00590 NC_009882.1 91733 92407 D hypothetical protein 91733..92407 Rickettsia rickettsii str. 'Sheila Smith' 5647843 YP_001494213.1 CDS A1G_00595 NC_009882.1 92575 94791 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 92575..94791 Rickettsia rickettsii str. 'Sheila Smith' 5647844 YP_001494214.1 CDS A1G_00600 NC_009882.1 94971 95084 D hypothetical protein 94971..95084 Rickettsia rickettsii str. 'Sheila Smith' 5647845 YP_001494215.1 CDS A1G_00605 NC_009882.1 95487 96803 R hypothetical protein complement(95487..96803) Rickettsia rickettsii str. 'Sheila Smith' 5647846 YP_001494216.1 CDS dcd NC_009882.1 97089 97655 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 97089..97655 Rickettsia rickettsii str. 'Sheila Smith' 5647847 YP_001494217.1 CDS A1G_00615 NC_009882.1 97701 98159 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 97701..98159 Rickettsia rickettsii str. 'Sheila Smith' 5647848 YP_001494218.1 CDS A1G_00620 NC_009882.1 98381 99094 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator 98381..99094 Rickettsia rickettsii str. 'Sheila Smith' 5647849 YP_001494219.1 CDS queF NC_009882.1 99098 99919 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 99098..99919 Rickettsia rickettsii str. 'Sheila Smith' 5647850 YP_001494220.1 CDS A1G_00630 NC_009882.1 100236 100796 R COG3820 Uncharacterized protein conserved in bacteria; hypothetical protein complement(100236..100796) Rickettsia rickettsii str. 'Sheila Smith' 5647851 YP_001494221.1 CDS A1G_00635 NC_009882.1 100851 102248 R COG1282 NAD/NADP transhydrogenase beta subunit; NAD(p) transhydrogenase subunit beta complement(100851..102248) Rickettsia rickettsii str. 'Sheila Smith' 5647852 YP_001494222.1 CDS A1G_00640 NC_009882.1 102387 103121 R COG3047 Outer membrane protein W; hypothetical protein complement(102387..103121) Rickettsia rickettsii str. 'Sheila Smith' 5647462 YP_001494223.1 CDS A1G_00645 NC_009882.1 103276 104160 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 103276..104160 Rickettsia rickettsii str. 'Sheila Smith' 5647463 YP_001494224.1 CDS A1G_00650 NC_009882.1 104147 105403 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 104147..105403 Rickettsia rickettsii str. 'Sheila Smith' 5647464 YP_001494225.1 CDS A1G_00655 NC_009882.1 105400 105576 D hypothetical protein 105400..105576 Rickettsia rickettsii str. 'Sheila Smith' 5647465 YP_001494226.1 CDS A1G_00660 NC_009882.1 105684 105884 D hypothetical protein 105684..105884 Rickettsia rickettsii str. 'Sheila Smith' 5647466 YP_001494227.1 CDS secG NC_009882.1 106238 106540 D preprotein translocase subunit SecG 106238..106540 Rickettsia rickettsii str. 'Sheila Smith' 5647468 YP_001494228.1 CDS A1G_00670 NC_009882.1 107447 112912 R COG0143 Methionyl-tRNA synthetase; hypothetical protein complement(107447..112912) Rickettsia rickettsii str. 'Sheila Smith' 5647469 YP_001494229.1 CDS cysS NC_009882.1 113209 114588 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 113209..114588 Rickettsia rickettsii str. 'Sheila Smith' 5647470 YP_001494230.1 CDS rpsB NC_009882.1 114829 115716 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 114829..115716 Rickettsia rickettsii str. 'Sheila Smith' 5648379 YP_001494231.1 CDS tsf NC_009882.1 115915 116844 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 115915..116844 Rickettsia rickettsii str. 'Sheila Smith' 5648380 YP_001494232.1 CDS A1G_00690 NC_009882.1 117318 117707 D hypothetical protein 117318..117707 Rickettsia rickettsii str. 'Sheila Smith' 5648381 YP_001494233.1 CDS A1G_00695 NC_009882.1 118077 118205 D hypothetical protein 118077..118205 Rickettsia rickettsii str. 'Sheila Smith' 5648382 YP_001494234.1 CDS A1G_00700 NC_009882.1 118354 119748 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(118354..119748) Rickettsia rickettsii str. 'Sheila Smith' 5648383 YP_001494235.1 CDS A1G_00705 NC_009882.1 119745 120401 R COG2121 Uncharacterized protein conserved in bacteria; hypothetical protein complement(119745..120401) Rickettsia rickettsii str. 'Sheila Smith' 5648384 YP_001494236.1 CDS A1G_00710 NC_009882.1 120552 121757 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(120552..121757) Rickettsia rickettsii str. 'Sheila Smith' 5648385 YP_001494237.1 CDS A1G_00715 NC_009882.1 122108 122272 R COG2161 Antitoxin of toxin-antitoxin stability system; hypothetical protein complement(122108..122272) Rickettsia rickettsii str. 'Sheila Smith' 5648386 YP_001494238.1 CDS A1G_00720 NC_009882.1 122409 123413 D COG0457 FOG: TPR repeat; hypothetical protein 122409..123413 Rickettsia rickettsii str. 'Sheila Smith' 5648387 YP_001494239.1 CDS A1G_00725 NC_009882.1 123418 124173 D COG2853 Surface lipoprotein; vacJ lipoprotein 123418..124173 Rickettsia rickettsii str. 'Sheila Smith' 5648388 YP_001494240.1 CDS A1G_00730 NC_009882.1 124193 124792 D COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component; hypothetical protein 124193..124792 Rickettsia rickettsii str. 'Sheila Smith' 5647913 YP_001494241.1 CDS A1G_00735 NC_009882.1 125279 125629 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 125279..125629 Rickettsia rickettsii str. 'Sheila Smith' 5647914 YP_001494242.1 CDS A1G_00740 NC_009882.1 125610 125777 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 125610..125777 Rickettsia rickettsii str. 'Sheila Smith' 5647915 YP_001494243.1 CDS A1G_00745 NC_009882.1 125749 125973 D hypothetical protein 125749..125973 Rickettsia rickettsii str. 'Sheila Smith' 5647916 YP_001494244.1 CDS alr NC_009882.1 126039 127106 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 126039..127106 Rickettsia rickettsii str. 'Sheila Smith' 5647917 YP_001494245.1 CDS A1G_00755 NC_009882.1 127263 128042 D COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; ABC transporter permease 127263..128042 Rickettsia rickettsii str. 'Sheila Smith' 5647918 YP_001494246.1 CDS A1G_00760 NC_009882.1 128194 128949 D COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ribonucleotide ABC transporter ATP-binding protein 128194..128949 Rickettsia rickettsii str. 'Sheila Smith' 5647919 YP_001494247.1 CDS A1G_00765 NC_009882.1 128951 129199 D hypothetical protein 128951..129199 Rickettsia rickettsii str. 'Sheila Smith' 5647920 YP_001494248.1 CDS A1G_00770 NC_009882.1 129755 130165 R hypothetical protein complement(129755..130165) Rickettsia rickettsii str. 'Sheila Smith' 5647921 YP_001494249.1 CDS A1G_00775 NC_009882.1 130606 130836 R hypothetical protein complement(130606..130836) Rickettsia rickettsii str. 'Sheila Smith' 5647922 YP_001494250.1 CDS A1G_00780 NC_009882.1 130863 131009 R COG0457 FOG: TPR repeat; hypothetical protein complement(130863..131009) Rickettsia rickettsii str. 'Sheila Smith' 5647923 YP_001494251.1 CDS rpmB NC_009882.1 131006 131143 R 50S ribosomal protein L28 complement(131006..131143) Rickettsia rickettsii str. 'Sheila Smith' 5647433 YP_001494252.1 CDS rpmB NC_009882.1 131618 131911 D required for 70S ribosome assembly; 50S ribosomal protein L28 131618..131911 Rickettsia rickettsii str. 'Sheila Smith' 5647434 YP_001494253.1 CDS A1G_00795 NC_009882.1 131908 132144 D RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 131908..132144 Rickettsia rickettsii str. 'Sheila Smith' 5647435 YP_001494254.1 CDS engB NC_009882.1 132498 133136 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 132498..133136 Rickettsia rickettsii str. 'Sheila Smith' 5647437 YP_001494255.1 CDS A1G_00805 NC_009882.1 133207 134007 D COG0548 Acetylglutamate kinase; acetylglutamate kinase 133207..134007 Rickettsia rickettsii str. 'Sheila Smith' 5647438 YP_001494256.1 CDS A1G_00810 NC_009882.1 134020 134307 D COG3702 Type IV secretory pathway, VirB3 components; type IV secretion system protein VirB3 134020..134307 Rickettsia rickettsii str. 'Sheila Smith' 5647439 YP_001494257.1 CDS A1G_00815 NC_009882.1 134523 136940 D COG3451 Type IV secretory pathway, VirB4 components; type IV secretion system ATPase VirB4 134523..136940 Rickettsia rickettsii str. 'Sheila Smith' 5647440 YP_001494258.1 CDS A1G_00820 NC_009882.1 137058 140018 D COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 137058..140018 Rickettsia rickettsii str. 'Sheila Smith' 5647441 YP_001494259.1 CDS A1G_00825 NC_009882.1 140005 141990 D COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 140005..141990 Rickettsia rickettsii str. 'Sheila Smith' 5648059 YP_001494260.1 CDS A1G_00830 NC_009882.1 141997 144897 D COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 141997..144897 Rickettsia rickettsii str. 'Sheila Smith' 5648060 YP_001494261.1 CDS A1G_00835 NC_009882.1 145100 147736 D COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 145100..147736 Rickettsia rickettsii str. 'Sheila Smith' 5648061 YP_001494262.1 CDS A1G_00840 NC_009882.1 147889 151350 D COG3704 Type IV secretory pathway, VirB6 components; hypothetical protein 147889..151350 Rickettsia rickettsii str. 'Sheila Smith' 5648062 YP_001494263.1 CDS trmD NC_009882.1 154188 154316 D tRNA (guanine-N(1)-)-methyltransferase 154188..154316 Rickettsia rickettsii str. 'Sheila Smith' 5648063 YP_001494264.1 CDS A1G_00870 NC_009882.1 154316 154411 D hypothetical protein 154316..154411 Rickettsia rickettsii str. 'Sheila Smith' 5648064 YP_001494265.1 CDS trmD NC_009882.1 154664 155368 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 154664..155368 Rickettsia rickettsii str. 'Sheila Smith' 5648065 YP_001494266.1 CDS rplS NC_009882.1 155386 155802 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 155386..155802 Rickettsia rickettsii str. 'Sheila Smith' 5648066 YP_001494267.1 CDS A1G_00885 NC_009882.1 155972 156208 R COG3750 Uncharacterized protein conserved in bacteria; hypothetical protein complement(155972..156208) Rickettsia rickettsii str. 'Sheila Smith' 5648067 YP_001494268.1 CDS secF NC_009882.1 156281 157207 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 156281..157207 Rickettsia rickettsii str. 'Sheila Smith' 5648068 YP_001494269.1 CDS A1G_00895 NC_009882.1 157372 158637 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 157372..158637 Rickettsia rickettsii str. 'Sheila Smith' 5648069 YP_001494270.1 CDS A1G_00900 NC_009882.1 158821 159621 D COG0681 Signal peptidase I; signal peptidase I 158821..159621 Rickettsia rickettsii str. 'Sheila Smith' 5648029 YP_001494271.1 CDS rnc NC_009882.1 159621 160304 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 159621..160304 Rickettsia rickettsii str. 'Sheila Smith' 5648030 YP_001494272.1 CDS era NC_009882.1 160297 161316 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 160297..161316 Rickettsia rickettsii str. 'Sheila Smith' 5648031 YP_001494273.1 CDS ruvC NC_009882.1 161434 161907 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 161434..161907 Rickettsia rickettsii str. 'Sheila Smith' 5648032 YP_001494274.1 CDS A1G_00920 NC_009882.1 161909 162601 D COG0565 rRNA methylase; tRNA/rRNA methyltransferase 161909..162601 Rickettsia rickettsii str. 'Sheila Smith' 5648033 YP_001494275.1 CDS A1G_00925 NC_009882.1 162582 162767 R hypothetical protein complement(162582..162767) Rickettsia rickettsii str. 'Sheila Smith' 5648034 YP_001494276.1 CDS A1G_00930 NC_009882.1 162868 163104 R hypothetical protein complement(162868..163104) Rickettsia rickettsii str. 'Sheila Smith' 5648035 YP_001494277.1 CDS A1G_00935 NC_009882.1 163213 164259 R COG3660 Predicted nucleoside-diphosphate-sugar epimerase; hypothetical protein complement(163213..164259) Rickettsia rickettsii str. 'Sheila Smith' 5648036 YP_001494278.1 CDS A1G_00940 NC_009882.1 164256 165215 R COG0489 ATPases involved in chromosome partitioning; Mrp protein complement(164256..165215) Rickettsia rickettsii str. 'Sheila Smith' 5648037 YP_001494279.1 CDS A1G_00945 NC_009882.1 165322 166362 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; protease activity modulator HflK 165322..166362 Rickettsia rickettsii str. 'Sheila Smith' 5648038 YP_001494280.1 CDS A1G_00950 NC_009882.1 166455 167315 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; membrane protease subunit stomatin/prohibitin-like protein 166455..167315 Rickettsia rickettsii str. 'Sheila Smith' 5647471 YP_001494281.1 CDS A1G_00955 NC_009882.1 167350 168876 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; serine protease 167350..168876 Rickettsia rickettsii str. 'Sheila Smith' 5647472 YP_001494282.1 CDS A1G_00960 NC_009882.1 169030 169773 D COG1054 Predicted sulfurtransferase; hypothetical protein 169030..169773 Rickettsia rickettsii str. 'Sheila Smith' 5647473 YP_001494283.1 CDS A1G_00965 NC_009882.1 169940 170314 D COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase cytochrome b-556 subunit 169940..170314 Rickettsia rickettsii str. 'Sheila Smith' 5647474 YP_001494284.1 CDS A1G_00970 NC_009882.1 170380 170469 D hypothetical protein 170380..170469 Rickettsia rickettsii str. 'Sheila Smith' 5647475 YP_001494285.1 CDS A1G_00975 NC_009882.1 170459 170836 D COG2142 Succinate dehydrogenase, hydrophobic anchor subunit; succinate dehydrogenase hydrophobic membrane anchor protein 170459..170836 Rickettsia rickettsii str. 'Sheila Smith' 5647476 YP_001494286.1 CDS sdhA NC_009882.1 170970 172760 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 170970..172760 Rickettsia rickettsii str. 'Sheila Smith' 5647477 YP_001494287.1 CDS A1G_00985 NC_009882.1 172907 173563 D COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 172907..173563 Rickettsia rickettsii str. 'Sheila Smith' 5647478 YP_001494288.1 CDS rpsL NC_009882.1 173722 174111 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 173722..174111 Rickettsia rickettsii str. 'Sheila Smith' 5647479 YP_001494289.1 CDS A1G_00995 NC_009882.1 174138 174620 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 174138..174620 Rickettsia rickettsii str. 'Sheila Smith' 5647480 YP_001494290.1 CDS A1G_01000 NC_009882.1 174633 176732 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 174633..176732 Rickettsia rickettsii str. 'Sheila Smith' 5647893 YP_001494291.1 CDS secE NC_009882.1 177150 177350 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 177150..177350 Rickettsia rickettsii str. 'Sheila Smith' 5647895 YP_001494292.1 CDS nusG NC_009882.1 177366 177944 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 177366..177944 Rickettsia rickettsii str. 'Sheila Smith' 5647896 YP_001494293.1 CDS rplK NC_009882.1 178214 178651 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 178214..178651 Rickettsia rickettsii str. 'Sheila Smith' 5647897 YP_001494294.1 CDS rplA NC_009882.1 178657 179376 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 178657..179376 Rickettsia rickettsii str. 'Sheila Smith' 5647898 YP_001494295.1 CDS rplJ NC_009882.1 179487 179996 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 179487..179996 Rickettsia rickettsii str. 'Sheila Smith' 5647899 YP_001494296.1 CDS rplL NC_009882.1 180140 180571 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 180140..180571 Rickettsia rickettsii str. 'Sheila Smith' 5647900 YP_001494297.1 CDS rpoB NC_009882.1 181518 185639 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 181518..185639 Rickettsia rickettsii str. 'Sheila Smith' 5647901 YP_001494298.1 CDS A1G_01040 NC_009882.1 185897 190015 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 185897..190015 Rickettsia rickettsii str. 'Sheila Smith' 5647545 YP_001494299.1 CDS A1G_01045 NC_009882.1 190416 191555 R hypothetical protein complement(190416..191555) Rickettsia rickettsii str. 'Sheila Smith' 5647546 YP_001494300.1 CDS A1G_01050 NC_009882.1 191767 193269 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 191767..193269 Rickettsia rickettsii str. 'Sheila Smith' 5647547 YP_001494301.1 CDS A1G_01055 NC_009882.1 193488 194288 D COG1192 ATPases involved in chromosome partitioning; hypothetical protein 193488..194288 Rickettsia rickettsii str. 'Sheila Smith' 5647548 YP_001494302.1 CDS A1G_01060 NC_009882.1 194371 194805 D hypothetical protein 194371..194805 Rickettsia rickettsii str. 'Sheila Smith' 5647549 YP_001494303.1 CDS aspS NC_009882.1 194866 196704 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 194866..196704 Rickettsia rickettsii str. 'Sheila Smith' 5647550 YP_001494304.1 CDS A1G_01070 NC_009882.1 196984 199098 R hypothetical protein complement(196984..199098) Rickettsia rickettsii str. 'Sheila Smith' 5647551 YP_001494305.1 CDS A1G_01075 NC_009882.1 199481 200191 R COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein complement(199481..200191) Rickettsia rickettsii str. 'Sheila Smith' 5647552 YP_001494306.1 CDS A1G_01080 NC_009882.1 200265 200984 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(200265..200984) Rickettsia rickettsii str. 'Sheila Smith' 5647553 YP_001494307.1 CDS A1G_01085 NC_009882.1 201262 201741 R COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; hypothetical protein complement(201262..201741) Rickettsia rickettsii str. 'Sheila Smith' 5647554 YP_001494308.1 CDS A1G_01090 NC_009882.1 201726 202451 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate binding protein complement(201726..202451) Rickettsia rickettsii str. 'Sheila Smith' 5647555 YP_001494309.1 CDS gatB NC_009882.1 202709 204160 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(202709..204160) Rickettsia rickettsii str. 'Sheila Smith' 5648049 YP_001494310.1 CDS gatA NC_009882.1 204163 205644 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(204163..205644) Rickettsia rickettsii str. 'Sheila Smith' 5648050 YP_001494311.1 CDS gatC NC_009882.1 205647 205949 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(205647..205949) Rickettsia rickettsii str. 'Sheila Smith' 5648051 YP_001494312.1 CDS A1G_01110 NC_009882.1 206253 206426 R hypothetical protein complement(206253..206426) Rickettsia rickettsii str. 'Sheila Smith' 5648052 YP_001494313.1 CDS frr NC_009882.1 206744 207304 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(206744..207304) Rickettsia rickettsii str. 'Sheila Smith' 5648053 YP_001494314.1 CDS pyrH NC_009882.1 207590 208333 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(207590..208333) Rickettsia rickettsii str. 'Sheila Smith' 5648054 YP_001494315.1 CDS A1G_01125 NC_009882.1 208342 208665 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E complement(208342..208665) Rickettsia rickettsii str. 'Sheila Smith' 5648055 YP_001494316.1 CDS A1G_01130 NC_009882.1 208649 210208 R COG0477 Permeases of the major facilitator superfamily; multidrug resistance protein B complement(208649..210208) Rickettsia rickettsii str. 'Sheila Smith' 5648056 YP_001494317.1 CDS A1G_01135 NC_009882.1 210439 210642 D COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; hypothetical protein 210439..210642 Rickettsia rickettsii str. 'Sheila Smith' 5648057 YP_001494318.1 CDS A1G_01140 NC_009882.1 211017 211202 R hypothetical protein complement(211017..211202) Rickettsia rickettsii str. 'Sheila Smith' 5648058 YP_001494319.1 CDS A1G_01145 NC_009882.1 211259 211849 R hypothetical protein complement(211259..211849) Rickettsia rickettsii str. 'Sheila Smith' 5648245 YP_001494320.1 CDS A1G_01150 NC_009882.1 212547 214853 R COG4775 Outer membrane protein/protective antigen OMA87; outer membrane protein omp1 complement(212547..214853) Rickettsia rickettsii str. 'Sheila Smith' 5648247 YP_001494321.1 CDS A1G_01155 NC_009882.1 215093 216166 R COG0750 Predicted membrane-associated Zn-dependent proteases 1; hypothetical protein complement(215093..216166) Rickettsia rickettsii str. 'Sheila Smith' 5648248 YP_001494322.1 CDS nusB NC_009882.1 216447 216917 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 216447..216917 Rickettsia rickettsii str. 'Sheila Smith' 5648249 YP_001494323.1 CDS A1G_01165 NC_009882.1 217051 217734 D COG0293 23S rRNA methylase; cell division protein ftsJ 217051..217734 Rickettsia rickettsii str. 'Sheila Smith' 5648250 YP_001494324.1 CDS A1G_01170 NC_009882.1 217785 218846 R hypothetical protein complement(217785..218846) Rickettsia rickettsii str. 'Sheila Smith' 5648251 YP_001494325.1 CDS A1G_01175 NC_009882.1 219011 219955 D hypothetical protein 219011..219955 Rickettsia rickettsii str. 'Sheila Smith' 5648252 YP_001494326.1 CDS A1G_01180 NC_009882.1 220015 220455 R COG2867 Oligoketide cyclase/lipid transport protein; hypothetical protein complement(220015..220455) Rickettsia rickettsii str. 'Sheila Smith' 5648253 YP_001494327.1 CDS A1G_01185 NC_009882.1 220455 220739 R COG5508 Uncharacterized conserved small protein; hypothetical protein complement(220455..220739) Rickettsia rickettsii str. 'Sheila Smith' 5648577 YP_001494328.1 CDS A1G_01190 NC_009882.1 220752 221486 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 220752..221486 Rickettsia rickettsii str. 'Sheila Smith' 5648578 YP_001494329.1 CDS A1G_01195 NC_009882.1 221575 221811 R COG2155 Uncharacterized conserved protein; hypothetical protein complement(221575..221811) Rickettsia rickettsii str. 'Sheila Smith' 5648579 YP_001494330.1 CDS A1G_01200 NC_009882.1 222066 225092 R COG0841 Cation/multidrug efflux pump; acriflavin resistance protein D complement(222066..225092) Rickettsia rickettsii str. 'Sheila Smith' 5648580 YP_001494331.1 CDS A1G_01205 NC_009882.1 225568 225900 D COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 225568..225900 Rickettsia rickettsii str. 'Sheila Smith' 5648581 YP_001494332.1 CDS A1G_01210 NC_009882.1 226040 226849 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 226040..226849 Rickettsia rickettsii str. 'Sheila Smith' 5648582 YP_001494333.1 CDS A1G_01215 NC_009882.1 227060 228409 D COG0541 Signal recognition particle GTPase; signal recognition particle protein 227060..228409 Rickettsia rickettsii str. 'Sheila Smith' 5648583 YP_001494334.1 CDS A1G_01220 NC_009882.1 229109 229405 R COG1505 Serine proteases of the peptidase family S9A; peptidase Y4NA (ppcE) complement(229109..229405) Rickettsia rickettsii str. 'Sheila Smith' 5648584 YP_001494335.1 CDS A1G_01225 NC_009882.1 229429 229695 R COG1505 Serine proteases of the peptidase family S9A; hypothetical protein complement(229429..229695) Rickettsia rickettsii str. 'Sheila Smith' 5648585 YP_001494336.1 CDS A1G_01230 NC_009882.1 230121 230282 R COG1505 Serine proteases of the peptidase family S9A; hypothetical protein complement(230121..230282) Rickettsia rickettsii str. 'Sheila Smith' 5648586 YP_001494337.1 CDS A1G_01245 NC_009882.1 231143 232345 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 231143..232345 Rickettsia rickettsii str. 'Sheila Smith' 5648203 YP_001494338.1 CDS A1G_01250 NC_009882.1 232400 232537 D hypothetical protein 232400..232537 Rickettsia rickettsii str. 'Sheila Smith' 5648204 YP_001494339.1 CDS A1G_01255 NC_009882.1 232567 232908 D COG0666 FOG: Ankyrin repeat; ankyrin repeat-containing protein 232567..232908 Rickettsia rickettsii str. 'Sheila Smith' 5648205 YP_001494340.1 CDS A1G_01260 NC_009882.1 232970 233101 D ankyrin repeat-containing protein 232970..233101 Rickettsia rickettsii str. 'Sheila Smith' 5648206 YP_001494341.1 CDS A1G_01265 NC_009882.1 233516 233698 R hypothetical protein complement(233516..233698) Rickettsia rickettsii str. 'Sheila Smith' 5648207 YP_001494342.1 CDS A1G_01270 NC_009882.1 234023 234208 R hypothetical protein complement(234023..234208) Rickettsia rickettsii str. 'Sheila Smith' 5648208 YP_001494343.1 CDS A1G_01275 NC_009882.1 234262 235461 R COG1301 Na+/H+-dicarboxylate symporters; proton/sodium-glutamate symport protein complement(234262..235461) Rickettsia rickettsii str. 'Sheila Smith' 5648209 YP_001494344.1 CDS A1G_01280 NC_009882.1 235500 235814 R COG1324 Uncharacterized protein involved in tolerance to divalent cations; divalent cation tolerance protein complement(235500..235814) Rickettsia rickettsii str. 'Sheila Smith' 5648210 YP_001494345.1 CDS A1G_01285 NC_009882.1 235817 236233 R COG0720 6-pyruvoyl-tetrahydropterin synthase; hypothetical protein complement(235817..236233) Rickettsia rickettsii str. 'Sheila Smith' 5648211 YP_001494346.1 CDS A1G_01290 NC_009882.1 236404 237591 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(236404..237591) Rickettsia rickettsii str. 'Sheila Smith' 5648212 YP_001494347.1 CDS kgd NC_009882.1 237606 237758 R alpha-ketoglutarate decarboxylase complement(237606..237758) Rickettsia rickettsii str. 'Sheila Smith' 5647822 YP_001494348.1 CDS sucA NC_009882.1 237755 240541 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(237755..240541) Rickettsia rickettsii str. 'Sheila Smith' 5647823 YP_001494349.1 CDS A1G_01305 NC_009882.1 240677 242167 R COG2317 Zn-dependent carboxypeptidase; thermostable carboxypeptidase complement(240677..242167) Rickettsia rickettsii str. 'Sheila Smith' 5647824 YP_001494350.1 CDS A1G_01310 NC_009882.1 242233 243870 R COG0497 ATPase involved in DNA repair; DNA repair protein RecN complement(242233..243870) Rickettsia rickettsii str. 'Sheila Smith' 5647825 YP_001494351.1 CDS A1G_01315 NC_009882.1 243878 244633 R COG4105 DNA uptake lipoprotein; hypothetical protein complement(243878..244633) Rickettsia rickettsii str. 'Sheila Smith' 5647826 YP_001494352.1 CDS A1G_01320 NC_009882.1 244912 245004 R hypothetical protein complement(244912..245004) Rickettsia rickettsii str. 'Sheila Smith' 5647827 YP_001494353.1 CDS A1G_01325 NC_009882.1 244994 245095 R COG4572 Putative cation transport regulator; hypothetical protein complement(244994..245095) Rickettsia rickettsii str. 'Sheila Smith' 5647828 YP_001494354.1 CDS A1G_01330 NC_009882.1 245174 246295 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(245174..246295) Rickettsia rickettsii str. 'Sheila Smith' 5647829 YP_001494355.1 CDS dnaK NC_009882.1 246424 248307 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(246424..248307) Rickettsia rickettsii str. 'Sheila Smith' 5647830 YP_001494356.1 CDS A1G_01340 NC_009882.1 248369 249862 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; heat shock protease 248369..249862 Rickettsia rickettsii str. 'Sheila Smith' 5647831 YP_001494357.1 CDS A1G_01345 NC_009882.1 250612 250890 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; hypothetical protein 250612..250890 Rickettsia rickettsii str. 'Sheila Smith' 5648183 YP_001494358.1 CDS A1G_01350 NC_009882.1 251031 251372 R hypothetical protein complement(251031..251372) Rickettsia rickettsii str. 'Sheila Smith' 5648184 YP_001494359.1 CDS A1G_01355 NC_009882.1 251540 252013 D hypothetical protein 251540..252013 Rickettsia rickettsii str. 'Sheila Smith' 5648185 YP_001494360.1 CDS holA NC_009882.1 252021 252995 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 252021..252995 Rickettsia rickettsii str. 'Sheila Smith' 5648186 YP_001494361.1 CDS A1G_01365 NC_009882.1 253131 253670 D COG2941 Ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein Coq7 253131..253670 Rickettsia rickettsii str. 'Sheila Smith' 5648187 YP_001494362.1 CDS A1G_01370 NC_009882.1 254225 254356 R hypothetical protein complement(254225..254356) Rickettsia rickettsii str. 'Sheila Smith' 5648188 YP_001494363.1 CDS A1G_01375 NC_009882.1 254355 255071 D COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome c oxidase subunit III 254355..255071 Rickettsia rickettsii str. 'Sheila Smith' 5648189 YP_001494364.1 CDS A1G_01380 NC_009882.1 255227 255586 D hypothetical protein 255227..255586 Rickettsia rickettsii str. 'Sheila Smith' 5648190 YP_001494365.1 CDS A1G_01385 NC_009882.1 255930 256562 R hypothetical protein complement(255930..256562) Rickettsia rickettsii str. 'Sheila Smith' 5648191 YP_001494366.1 CDS dapD NC_009882.1 256639 257463 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 256639..257463 Rickettsia rickettsii str. 'Sheila Smith' 5648192 YP_001494367.1 CDS A1G_01395 NC_009882.1 257674 257922 R hypothetical protein complement(257674..257922) Rickettsia rickettsii str. 'Sheila Smith' 5648781 YP_001494368.1 CDS A1G_01400 NC_009882.1 257903 258142 R hypothetical protein complement(257903..258142) Rickettsia rickettsii str. 'Sheila Smith' 5648782 YP_001494369.1 CDS A1G_01405 NC_009882.1 258567 258764 R hypothetical protein complement(258567..258764) Rickettsia rickettsii str. 'Sheila Smith' 5648783 YP_001494370.1 CDS A1G_01410 NC_009882.1 258893 259162 R hypothetical protein complement(258893..259162) Rickettsia rickettsii str. 'Sheila Smith' 5648784 YP_001494371.1 CDS A1G_01415 NC_009882.1 259150 259308 R hypothetical protein complement(259150..259308) Rickettsia rickettsii str. 'Sheila Smith' 5648785 YP_001494372.1 CDS A1G_01420 NC_009882.1 259379 259531 R hypothetical protein complement(259379..259531) Rickettsia rickettsii str. 'Sheila Smith' 5648786 YP_001494373.1 CDS A1G_01440 NC_009882.1 262509 262940 D cell surface antigen-like protein Sca8 262509..262940 Rickettsia rickettsii str. 'Sheila Smith' 5648787 YP_001494374.1 CDS A1G_01445 NC_009882.1 263261 263530 D cell surface antigen-like protein Sca8 263261..263530 Rickettsia rickettsii str. 'Sheila Smith' 5648788 YP_001494375.1 CDS A1G_01450 NC_009882.1 263542 263811 D hypothetical protein 263542..263811 Rickettsia rickettsii str. 'Sheila Smith' 5648789 YP_001494376.1 CDS A1G_01455 NC_009882.1 264525 264827 R hypothetical protein complement(264525..264827) Rickettsia rickettsii str. 'Sheila Smith' 5648790 YP_001494377.1 CDS A1G_01475 NC_009882.1 266435 266578 D COG0451 Nucleoside-diphosphate-sugar epimerases; cell surface antigen-like protein Sca8 266435..266578 Rickettsia rickettsii str. 'Sheila Smith' 5648070 YP_001494378.1 CDS A1G_01480 NC_009882.1 267069 267515 R COG0589 Universal stress protein UspA and related nucleotide-binding proteins; hypothetical protein complement(267069..267515) Rickettsia rickettsii str. 'Sheila Smith' 5648071 YP_001494379.1 CDS A1G_01485 NC_009882.1 267525 268466 R COG2358 TRAP-type uncharacterized transport system, periplasmic component; hypothetical protein complement(267525..268466) Rickettsia rickettsii str. 'Sheila Smith' 5648072 YP_001494380.1 CDS A1G_01490 NC_009882.1 268471 269541 R hypothetical protein complement(268471..269541) Rickettsia rickettsii str. 'Sheila Smith' 5648073 YP_001494381.1 CDS A1G_01495 NC_009882.1 269554 269892 R COG0633 Ferredoxin; ferredoxin complement(269554..269892) Rickettsia rickettsii str. 'Sheila Smith' 5648074 YP_001494382.1 CDS hscA NC_009882.1 269956 271743 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(269956..271743) Rickettsia rickettsii str. 'Sheila Smith' 5648075 YP_001494383.1 CDS hscB NC_009882.1 271734 272234 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(271734..272234) Rickettsia rickettsii str. 'Sheila Smith' 5648076 YP_001494384.1 CDS rnhB NC_009882.1 272296 272877 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 272296..272877 Rickettsia rickettsii str. 'Sheila Smith' 5648077 YP_001494385.1 CDS A1G_01515 NC_009882.1 272842 273021 R hypothetical protein complement(272842..273021) Rickettsia rickettsii str. 'Sheila Smith' 5648078 YP_001494386.1 CDS A1G_01520 NC_009882.1 273031 275016 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(273031..275016) Rickettsia rickettsii str. 'Sheila Smith' 5648079 YP_001494387.1 CDS A1G_01525 NC_009882.1 275087 275395 D COG0695 Glutaredoxin and related proteins; glutaredoxin 3 275087..275395 Rickettsia rickettsii str. 'Sheila Smith' 5648493 YP_001494388.1 CDS A1G_01540 NC_009882.1 276367 276924 D COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components; hypothetical protein 276367..276924 Rickettsia rickettsii str. 'Sheila Smith' 5648494 YP_001494389.1 CDS A1G_01545 NC_009882.1 277213 277476 R DNA gyrase subunit A complement(277213..277476) Rickettsia rickettsii str. 'Sheila Smith' 5648495 YP_001494390.1 CDS A1G_01550 NC_009882.1 277846 277953 D hypothetical protein 277846..277953 Rickettsia rickettsii str. 'Sheila Smith' 5648496 YP_001494391.1 CDS A1G_01555 NC_009882.1 278384 281101 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 278384..281101 Rickettsia rickettsii str. 'Sheila Smith' 5648497 YP_001494392.1 CDS A1G_01560 NC_009882.1 281627 281836 D hypothetical protein 281627..281836 Rickettsia rickettsii str. 'Sheila Smith' 5648498 YP_001494393.1 CDS A1G_01565 NC_009882.1 281923 282165 D transporter 281923..282165 Rickettsia rickettsii str. 'Sheila Smith' 5648499 YP_001494394.1 CDS A1G_01580 NC_009882.1 282877 282996 D hypothetical protein 282877..282996 Rickettsia rickettsii str. 'Sheila Smith' 5648500 YP_001494395.1 CDS A1G_01585 NC_009882.1 283121 283303 D hypothetical protein 283121..283303 Rickettsia rickettsii str. 'Sheila Smith' 5648501 YP_001494396.1 CDS def NC_009882.1 283330 283482 R peptide deformylase complement(283330..283482) Rickettsia rickettsii str. 'Sheila Smith' 5648502 YP_001494397.1 CDS def NC_009882.1 283754 284281 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 283754..284281 Rickettsia rickettsii str. 'Sheila Smith' 5647853 YP_001494398.1 CDS fmt NC_009882.1 284293 285189 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 284293..285189 Rickettsia rickettsii str. 'Sheila Smith' 5647854 YP_001494399.1 CDS A1G_01605 NC_009882.1 285406 285849 D COG0147 Anthranilate/para-aminobenzoate synthases component I; hypothetical protein 285406..285849 Rickettsia rickettsii str. 'Sheila Smith' 5647855 YP_001494400.1 CDS A1G_01610 NC_009882.1 289631 290197 D COG4421 Capsular polysaccharide biosynthesis protein; hypothetical protein 289631..290197 Rickettsia rickettsii str. 'Sheila Smith' 5647857 YP_001494401.1 CDS A1G_01615 NC_009882.1 290356 291408 R COG1485 Predicted ATPase; putative ATPase n2B complement(290356..291408) Rickettsia rickettsii str. 'Sheila Smith' 5647858 YP_001494402.1 CDS A1G_01620 NC_009882.1 291623 292720 R COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(291623..292720) Rickettsia rickettsii str. 'Sheila Smith' 5647859 YP_001494403.1 CDS A1G_01625 NC_009882.1 292887 293315 D COG0666 FOG: Ankyrin repeat; hypothetical protein 292887..293315 Rickettsia rickettsii str. 'Sheila Smith' 5647860 YP_001494404.1 CDS A1G_01630 NC_009882.1 293486 293725 D hypothetical protein 293486..293725 Rickettsia rickettsii str. 'Sheila Smith' 5647861 YP_001494405.1 CDS A1G_01635 NC_009882.1 293809 293943 D hypothetical protein 293809..293943 Rickettsia rickettsii str. 'Sheila Smith' 5647862 YP_001494406.1 CDS A1G_01640 NC_009882.1 294017 295786 R COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance ABC transporter ATP-binding protein complement(294017..295786) Rickettsia rickettsii str. 'Sheila Smith' 5647728 YP_001494407.1 CDS A1G_01645 NC_009882.1 295966 296238 D hypothetical protein 295966..296238 Rickettsia rickettsii str. 'Sheila Smith' 5647729 YP_001494408.1 CDS A1G_01650 NC_009882.1 296390 297760 D COG1271 Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d ubiquinol oxidase subunit I 296390..297760 Rickettsia rickettsii str. 'Sheila Smith' 5647730 YP_001494409.1 CDS A1G_01655 NC_009882.1 297768 298787 D COG1294 Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit II 297768..298787 Rickettsia rickettsii str. 'Sheila Smith' 5647731 YP_001494410.1 CDS A1G_01660 NC_009882.1 298989 299231 D COG2161 Antitoxin of toxin-antitoxin stability system; hypothetical protein 298989..299231 Rickettsia rickettsii str. 'Sheila Smith' 5647732 YP_001494411.1 CDS A1G_01665 NC_009882.1 299242 299502 D COG4115 Uncharacterized protein conserved in bacteria; hypothetical protein 299242..299502 Rickettsia rickettsii str. 'Sheila Smith' 5647733 YP_001494412.1 CDS A1G_01670 NC_009882.1 299495 300343 D COG0463 Glycosyltransferases involved in cell wall biogenesis; beta 1,4 glucosyltransferase 299495..300343 Rickettsia rickettsii str. 'Sheila Smith' 5647734 YP_001494413.1 CDS A1G_01675 NC_009882.1 300420 301658 D COG0612 Predicted Zn-dependent peptidases; hypothetical protein 300420..301658 Rickettsia rickettsii str. 'Sheila Smith' 5647735 YP_001494414.1 CDS A1G_01680 NC_009882.1 301812 302522 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 301812..302522 Rickettsia rickettsii str. 'Sheila Smith' 5647736 YP_001494415.1 CDS A1G_01685 NC_009882.1 302739 304325 D COG0120 Ribose 5-phosphate isomerase; hypothetical protein 302739..304325 Rickettsia rickettsii str. 'Sheila Smith' 5647737 YP_001494416.1 CDS thrS NC_009882.1 304422 306329 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 304422..306329 Rickettsia rickettsii str. 'Sheila Smith' 5648337 YP_001494417.1 CDS A1G_01695 NC_009882.1 306786 306929 D hypothetical protein 306786..306929 Rickettsia rickettsii str. 'Sheila Smith' 5648338 YP_001494418.1 CDS A1G_01700 NC_009882.1 307015 307128 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATPase and permease 307015..307128 Rickettsia rickettsii str. 'Sheila Smith' 5648339 YP_001494419.1 CDS A1G_01725 NC_009882.1 308685 309101 R hypothetical protein complement(308685..309101) Rickettsia rickettsii str. 'Sheila Smith' 5648340 YP_001494420.1 CDS A1G_01730 NC_009882.1 309101 309745 R hypothetical protein complement(309101..309745) Rickettsia rickettsii str. 'Sheila Smith' 5648341 YP_001494421.1 CDS A1G_01735 NC_009882.1 309738 309836 R hypothetical protein complement(309738..309836) Rickettsia rickettsii str. 'Sheila Smith' 5648342 YP_001494422.1 CDS A1G_01740 NC_009882.1 310030 310182 R hypothetical protein complement(310030..310182) Rickettsia rickettsii str. 'Sheila Smith' 5648343 YP_001494423.1 CDS A1G_01745 NC_009882.1 310487 311848 D COG1538 Outer membrane protein; outer membrane protein tolC 310487..311848 Rickettsia rickettsii str. 'Sheila Smith' 5648344 YP_001494424.1 CDS A1G_01750 NC_009882.1 311880 312248 D COG3827 Uncharacterized protein conserved in bacteria; hypothetical protein 311880..312248 Rickettsia rickettsii str. 'Sheila Smith' 5648345 YP_001494425.1 CDS A1G_01755 NC_009882.1 312257 312475 D hypothetical protein 312257..312475 Rickettsia rickettsii str. 'Sheila Smith' 5648346 YP_001494426.1 CDS A1G_01760 NC_009882.1 312465 314186 D COG0666 FOG: Ankyrin repeat; hypothetical protein 312465..314186 Rickettsia rickettsii str. 'Sheila Smith' 5647790 YP_001494427.1 CDS A1G_01765 NC_009882.1 314396 316384 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 314396..316384 Rickettsia rickettsii str. 'Sheila Smith' 5647791 YP_001494428.1 CDS A1G_01770 NC_009882.1 316513 317862 D COG0793 Periplasmic protease; tail-specific protease 316513..317862 Rickettsia rickettsii str. 'Sheila Smith' 5647792 YP_001494429.1 CDS A1G_01775 NC_009882.1 318077 319570 D COG0642 Signal transduction histidine kinase; histidine kinase sensor protein 318077..319570 Rickettsia rickettsii str. 'Sheila Smith' 5647793 YP_001494430.1 CDS A1G_01780 NC_009882.1 319636 320373 D COG1729 Uncharacterized protein conserved in bacteria; hypothetical protein 319636..320373 Rickettsia rickettsii str. 'Sheila Smith' 5647794 YP_001494431.1 CDS A1G_01785 NC_009882.1 320386 321048 D hypothetical protein 320386..321048 Rickettsia rickettsii str. 'Sheila Smith' 5647795 YP_001494432.1 CDS A1G_01790 NC_009882.1 321071 322315 D COG1520 FOG: WD40-like repeat; hypothetical protein 321071..322315 Rickettsia rickettsii str. 'Sheila Smith' 5647796 YP_001494433.1 CDS rplM NC_009882.1 322409 322876 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 322409..322876 Rickettsia rickettsii str. 'Sheila Smith' 5647797 YP_001494434.1 CDS rpsI NC_009882.1 322883 323362 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 322883..323362 Rickettsia rickettsii str. 'Sheila Smith' 5647798 YP_001494435.1 CDS A1G_01805 NC_009882.1 324101 324301 D COG2173 D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase 324101..324301 Rickettsia rickettsii str. 'Sheila Smith' 5647759 YP_001494436.1 CDS A1G_01810 NC_009882.1 324638 324799 D COG2173 D-alanyl-D-alanine dipeptidase; hypothetical protein 324638..324799 Rickettsia rickettsii str. 'Sheila Smith' 5647760 YP_001494437.1 CDS A1G_01815 NC_009882.1 324951 325055 D putative pterin-4-alpha-carbinolamine dehydratase (PHS) 324951..325055 Rickettsia rickettsii str. 'Sheila Smith' 5647761 YP_001494438.1 CDS A1G_01820 NC_009882.1 325326 325619 D hypothetical protein 325326..325619 Rickettsia rickettsii str. 'Sheila Smith' 5647762 YP_001494439.1 CDS A1G_01825 NC_009882.1 325626 325853 D hypothetical protein 325626..325853 Rickettsia rickettsii str. 'Sheila Smith' 5647763 YP_001494440.1 CDS A1G_01830 NC_009882.1 326016 326501 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(326016..326501) Rickettsia rickettsii str. 'Sheila Smith' 5647764 YP_001494441.1 CDS A1G_01845 NC_009882.1 327959 328525 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 327959..328525 Rickettsia rickettsii str. 'Sheila Smith' 5647765 YP_001494442.1 CDS A1G_01850 NC_009882.1 328750 329499 D COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; extragenic suppressor protein suhB 328750..329499 Rickettsia rickettsii str. 'Sheila Smith' 5647766 YP_001494443.1 CDS A1G_01855 NC_009882.1 329571 329894 D hypothetical protein 329571..329894 Rickettsia rickettsii str. 'Sheila Smith' 5647767 YP_001494444.1 CDS A1G_01860 NC_009882.1 329928 330623 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 329928..330623 Rickettsia rickettsii str. 'Sheila Smith' 5647933 YP_001494445.1 CDS A1G_01865 NC_009882.1 330885 331649 D COG1183 Phosphatidylserine synthase; CDP-diacylglycerol--serine O-phosphatidyltransferase 330885..331649 Rickettsia rickettsii str. 'Sheila Smith' 5647934 YP_001494446.1 CDS A1G_01870 NC_009882.1 331643 332710 D COG1566 Multidrug resistance efflux pump; multidrug resistance protein A 331643..332710 Rickettsia rickettsii str. 'Sheila Smith' 5647935 YP_001494447.1 CDS A1G_01875 NC_009882.1 333054 333284 D hypothetical protein 333054..333284 Rickettsia rickettsii str. 'Sheila Smith' 5647936 YP_001494448.1 CDS A1G_01880 NC_009882.1 333307 333474 D hypothetical protein 333307..333474 Rickettsia rickettsii str. 'Sheila Smith' 5647937 YP_001494449.1 CDS A1G_01885 NC_009882.1 333624 333827 R hypothetical protein complement(333624..333827) Rickettsia rickettsii str. 'Sheila Smith' 5647938 YP_001494450.1 CDS A1G_01890 NC_009882.1 333824 334066 R COG0271 Stress-induced morphogen (activity unknown); hypothetical protein complement(333824..334066) Rickettsia rickettsii str. 'Sheila Smith' 5647939 YP_001494451.1 CDS A1G_01895 NC_009882.1 334130 335341 D COG2200 FOG: EAL domain; hypothetical protein 334130..335341 Rickettsia rickettsii str. 'Sheila Smith' 5647940 YP_001494452.1 CDS murC NC_009882.1 335562 337019 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 335562..337019 Rickettsia rickettsii str. 'Sheila Smith' 5647941 YP_001494453.1 CDS murB NC_009882.1 337241 338128 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 337241..338128 Rickettsia rickettsii str. 'Sheila Smith' 5647942 YP_001494454.1 CDS ddl NC_009882.1 338372 339337 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 338372..339337 Rickettsia rickettsii str. 'Sheila Smith' 5648316 YP_001494455.1 CDS A1G_01915 NC_009882.1 339334 340137 D COG1589 Cell division septal protein; cell division protein ftsQ 339334..340137 Rickettsia rickettsii str. 'Sheila Smith' 5648317 YP_001494456.1 CDS A1G_01920 NC_009882.1 340265 341500 D COG0849 Actin-like ATPase involved in cell division; cell division protein ftsA 340265..341500 Rickettsia rickettsii str. 'Sheila Smith' 5648318 YP_001494457.1 CDS A1G_01925 NC_009882.1 341642 342112 R hypothetical protein complement(341642..342112) Rickettsia rickettsii str. 'Sheila Smith' 5648319 YP_001494458.1 CDS A1G_01930 NC_009882.1 342102 342629 R COG3474 Cytochrome c2; cytochrome c complement(342102..342629) Rickettsia rickettsii str. 'Sheila Smith' 5648320 YP_001494459.1 CDS A1G_01935 NC_009882.1 342742 343812 D hypothetical protein 342742..343812 Rickettsia rickettsii str. 'Sheila Smith' 5648321 YP_001494460.1 CDS lpxC NC_009882.1 343821 344696 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(343821..344696) Rickettsia rickettsii str. 'Sheila Smith' 5648322 YP_001494461.1 CDS A1G_01945 NC_009882.1 345054 346202 R hypothetical protein complement(345054..346202) Rickettsia rickettsii str. 'Sheila Smith' 5648323 YP_001494462.1 CDS A1G_01950 NC_009882.1 346629 348701 D COG1530 Ribonucleases G and E; ribonuclease E 346629..348701 Rickettsia rickettsii str. 'Sheila Smith' 5648324 YP_001494463.1 CDS A1G_01955 NC_009882.1 348985 349953 D COG1612 Uncharacterized protein required for cytochrome oxidase assembly; cytochrome c oxidase assembly protein 348985..349953 Rickettsia rickettsii str. 'Sheila Smith' 5648325 YP_001494464.1 CDS A1G_01960 NC_009882.1 349966 350877 D COG0564 Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase C 349966..350877 Rickettsia rickettsii str. 'Sheila Smith' 5648162 YP_001494465.1 CDS A1G_01980 NC_009882.1 352197 353012 D COG0708 Exonuclease III; exodeoxyribonuclease III 352197..353012 Rickettsia rickettsii str. 'Sheila Smith' 5648163 YP_001494466.1 CDS A1G_01985 NC_009882.1 353035 354015 D COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; pyruvate dehydrogenase e1 component subunit alpha 353035..354015 Rickettsia rickettsii str. 'Sheila Smith' 5648164 YP_001494467.1 CDS A1G_01990 NC_009882.1 354176 355156 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acyltransferase within the complex. The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2); it contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 354176..355156 Rickettsia rickettsii str. 'Sheila Smith' 5648165 YP_001494468.1 CDS A1G_01995 NC_009882.1 355294 357123 R COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein complement(355294..357123) Rickettsia rickettsii str. 'Sheila Smith' 5648166 YP_001494469.1 CDS A1G_02000 NC_009882.1 357265 357504 D hypothetical protein 357265..357504 Rickettsia rickettsii str. 'Sheila Smith' 5648167 YP_001494470.1 CDS A1G_02005 NC_009882.1 357586 357804 D hypothetical protein 357586..357804 Rickettsia rickettsii str. 'Sheila Smith' 5648168 YP_001494471.1 CDS A1G_02010 NC_009882.1 357865 358008 D hypothetical protein 357865..358008 Rickettsia rickettsii str. 'Sheila Smith' 5648169 YP_001494472.1 CDS A1G_02015 NC_009882.1 358297 358782 D COG2825 Outer membrane protein; hypothetical protein 358297..358782 Rickettsia rickettsii str. 'Sheila Smith' 5648170 YP_001494473.1 CDS A1G_02020 NC_009882.1 358959 360410 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 358959..360410 Rickettsia rickettsii str. 'Sheila Smith' 5648171 YP_001494474.1 CDS A1G_02025 NC_009882.1 360525 360845 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 360525..360845 Rickettsia rickettsii str. 'Sheila Smith' 5648172 YP_001494475.1 CDS A1G_02030 NC_009882.1 360909 361982 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 360909..361982 Rickettsia rickettsii str. 'Sheila Smith' 5647738 YP_001494476.1 CDS A1G_02035 NC_009882.1 361975 362622 D heme exporter protein B 361975..362622 Rickettsia rickettsii str. 'Sheila Smith' 5647739 YP_001494477.1 CDS A1G_02040 NC_009882.1 362697 363152 D hypothetical protein 362697..363152 Rickettsia rickettsii str. 'Sheila Smith' 5647740 YP_001494478.1 CDS A1G_02045 NC_009882.1 363174 363707 D COG0723 Rieske Fe-S protein; cytochrome b6-f complex iron-sulfur subunit 363174..363707 Rickettsia rickettsii str. 'Sheila Smith' 5647741 YP_001494479.1 CDS A1G_02050 NC_009882.1 363714 364910 D COG1290 Cytochrome b subunit of the bc complex; cytochrome b 363714..364910 Rickettsia rickettsii str. 'Sheila Smith' 5647742 YP_001494480.1 CDS A1G_02055 NC_009882.1 365220 365294 D hypothetical protein 365220..365294 Rickettsia rickettsii str. 'Sheila Smith' 5647743 YP_001494481.1 CDS A1G_02060 NC_009882.1 365498 366166 D COG2857 Cytochrome c1; cytochrome c1, heme protein 365498..366166 Rickettsia rickettsii str. 'Sheila Smith' 5647744 YP_001494482.1 CDS A1G_02065 NC_009882.1 366726 366896 D COG3067 Na+/H+ antiporter; hypothetical protein 366726..366896 Rickettsia rickettsii str. 'Sheila Smith' 5647745 YP_001494483.1 CDS A1G_02070 NC_009882.1 366957 367460 D COG0071 Molecular chaperone (small heat shock protein); heat shock protein 366957..367460 Rickettsia rickettsii str. 'Sheila Smith' 5647746 YP_001494484.1 CDS A1G_02075 NC_009882.1 367710 367895 R hypothetical protein complement(367710..367895) Rickettsia rickettsii str. 'Sheila Smith' 5647747 YP_001494485.1 CDS A1G_02080 NC_009882.1 367954 368094 R hypothetical protein complement(367954..368094) Rickettsia rickettsii str. 'Sheila Smith' 5647748 YP_001494486.1 CDS A1G_02085 NC_009882.1 368326 368613 R COG4804 Uncharacterized conserved protein; hypothetical protein complement(368326..368613) Rickettsia rickettsii str. 'Sheila Smith' 5647749 YP_001494487.1 CDS A1G_02090 NC_009882.1 368843 369346 R COG4804 Uncharacterized conserved protein; hypothetical protein complement(368843..369346) Rickettsia rickettsii str. 'Sheila Smith' 5647750 YP_001494488.1 CDS prfB NC_009882.1 369356 370213 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(369356..370213) Rickettsia rickettsii str. 'Sheila Smith' 5647751 YP_001494489.1 CDS A1G_02100 NC_009882.1 370581 372383 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 370581..372383 Rickettsia rickettsii str. 'Sheila Smith' 5647752 YP_001494490.1 CDS A1G_02110 NC_009882.1 372904 373002 R hypothetical protein complement(372904..373002) Rickettsia rickettsii str. 'Sheila Smith' 5647754 YP_001494491.1 CDS A1G_02115 NC_009882.1 373484 373645 R outer membrane protein OmpA complement(373484..373645) Rickettsia rickettsii str. 'Sheila Smith' 5647755 YP_001494492.1 CDS A1G_02135 NC_009882.1 375897 376286 D hypothetical protein 375897..376286 Rickettsia rickettsii str. 'Sheila Smith' 5647756 YP_001494493.1 CDS A1G_02150 NC_009882.1 377879 378376 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 377879..378376 Rickettsia rickettsii str. 'Sheila Smith' 5647757 YP_001494494.1 CDS A1G_02155 NC_009882.1 378603 379022 R COG0477 Permeases of the major facilitator superfamily; MFS type sugar transporter complement(378603..379022) Rickettsia rickettsii str. 'Sheila Smith' 5647758 YP_001494495.1 CDS A1G_02160 NC_009882.1 379469 380569 R COG0772 Bacterial cell division membrane protein; rod shape-determining protein RodA complement(379469..380569) Rickettsia rickettsii str. 'Sheila Smith' 5648451 YP_001494496.1 CDS A1G_02165 NC_009882.1 380725 382905 R COG1770 Protease II; protease II complement(380725..382905) Rickettsia rickettsii str. 'Sheila Smith' 5648452 YP_001494497.1 CDS A1G_02170 NC_009882.1 383091 384629 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(383091..384629) Rickettsia rickettsii str. 'Sheila Smith' 5648453 YP_001494498.1 CDS A1G_02175 NC_009882.1 384409 384507 D hypothetical protein 384409..384507 Rickettsia rickettsii str. 'Sheila Smith' 5648454 YP_001494499.1 CDS A1G_02180 NC_009882.1 384631 385035 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; hypothetical protein complement(384631..385035) Rickettsia rickettsii str. 'Sheila Smith' 5648455 YP_001494500.1 CDS A1G_02185 NC_009882.1 385026 385313 R hypothetical protein complement(385026..385313) Rickettsia rickettsii str. 'Sheila Smith' 5648456 YP_001494501.1 CDS A1G_02190 NC_009882.1 385500 386963 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(385500..386963) Rickettsia rickettsii str. 'Sheila Smith' 5648457 YP_001494502.1 CDS A1G_02195 NC_009882.1 387110 388225 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(387110..388225) Rickettsia rickettsii str. 'Sheila Smith' 5648458 YP_001494503.1 CDS A1G_02200 NC_009882.1 388408 388743 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(388408..388743) Rickettsia rickettsii str. 'Sheila Smith' 5648459 YP_001494504.1 CDS A1G_02205 NC_009882.1 388822 389574 R COG3504 Type IV secretory pathway, VirB9 components; VirB9 protein complement(388822..389574) Rickettsia rickettsii str. 'Sheila Smith' 5648460 YP_001494505.1 CDS A1G_02210 NC_009882.1 389576 390274 R COG3736 Type IV secretory pathway, component VirB8; virB8 protein complement(389576..390274) Rickettsia rickettsii str. 'Sheila Smith' 5648461 YP_001494506.1 CDS A1G_02215 NC_009882.1 390739 390918 D hypothetical protein 390739..390918 Rickettsia rickettsii str. 'Sheila Smith' 5648264 YP_001494507.1 CDS A1G_02220 NC_009882.1 390968 391699 D COG3736 Type IV secretory pathway, component VirB8; hypothetical protein 390968..391699 Rickettsia rickettsii str. 'Sheila Smith' 5648265 YP_001494508.1 CDS A1G_02225 NC_009882.1 391686 392159 D COG3504 Type IV secretory pathway, VirB9 components; virB9 protein 391686..392159 Rickettsia rickettsii str. 'Sheila Smith' 5648266 YP_001494509.1 CDS A1G_02230 NC_009882.1 392342 393790 D COG2948 Type IV secretory pathway, VirB10 components; virB10 protein 392342..393790 Rickettsia rickettsii str. 'Sheila Smith' 5648267 YP_001494510.1 CDS A1G_02235 NC_009882.1 393787 394791 D COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; type IV secretion system ATPase VirB11 393787..394791 Rickettsia rickettsii str. 'Sheila Smith' 5648268 YP_001494511.1 CDS A1G_02240 NC_009882.1 394925 396700 D COG3505 Type IV secretory pathway, VirD4 components; type IV secretion system protein VirB8 394925..396700 Rickettsia rickettsii str. 'Sheila Smith' 5648269 YP_001494512.1 CDS A1G_02245 NC_009882.1 396693 398114 D COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase 396693..398114 Rickettsia rickettsii str. 'Sheila Smith' 5648270 YP_001494513.1 CDS A1G_02250 NC_009882.1 398328 398639 R hypothetical protein complement(398328..398639) Rickettsia rickettsii str. 'Sheila Smith' 5648271 YP_001494514.1 CDS A1G_02255 NC_009882.1 399575 399814 R hypothetical protein complement(399575..399814) Rickettsia rickettsii str. 'Sheila Smith' 5648272 YP_001494515.1 CDS A1G_02270 NC_009882.1 400518 400802 R hypothetical protein complement(400518..400802) Rickettsia rickettsii str. 'Sheila Smith' 5648273 YP_001494516.1 CDS A1G_02275 NC_009882.1 401044 401928 D hypothetical protein 401044..401928 Rickettsia rickettsii str. 'Sheila Smith' 5648274 YP_001494517.1 CDS A1G_02280 NC_009882.1 401891 402736 D hypothetical protein 401891..402736 Rickettsia rickettsii str. 'Sheila Smith' 5648651 YP_001494518.1 CDS A1G_02285 NC_009882.1 402739 403515 D COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; cysQ protein 402739..403515 Rickettsia rickettsii str. 'Sheila Smith' 5648652 YP_001494519.1 CDS A1G_02290 NC_009882.1 403655 406315 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(403655..406315) Rickettsia rickettsii str. 'Sheila Smith' 5648653 YP_001494520.1 CDS A1G_02295 NC_009882.1 406498 406932 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(406498..406932) Rickettsia rickettsii str. 'Sheila Smith' 5648654 YP_001494521.1 CDS A1G_02300 NC_009882.1 407020 407658 D COG0739 Membrane proteins related to metalloendopeptidases; outer membrane antigenic lipoprotein B precursor 407020..407658 Rickettsia rickettsii str. 'Sheila Smith' 5648655 YP_001494522.1 CDS A1G_02305 NC_009882.1 407659 408351 D COG1451 Predicted metal-dependent hydrolase; hypothetical protein 407659..408351 Rickettsia rickettsii str. 'Sheila Smith' 5648656 YP_001494523.1 CDS thyX NC_009882.1 408460 409344 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 408460..409344 Rickettsia rickettsii str. 'Sheila Smith' 5648657 YP_001494524.1 CDS tolB NC_009882.1 409419 410753 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 409419..410753 Rickettsia rickettsii str. 'Sheila Smith' 5648658 YP_001494525.1 CDS A1G_02320 NC_009882.1 410892 411773 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(410892..411773) Rickettsia rickettsii str. 'Sheila Smith' 5648659 YP_001494526.1 CDS A1G_02325 NC_009882.1 411875 412441 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 411875..412441 Rickettsia rickettsii str. 'Sheila Smith' 5648660 YP_001494527.1 CDS A1G_02330 NC_009882.1 412539 413519 R COG0457 FOG: TPR repeat; hypothetical protein complement(412539..413519) Rickettsia rickettsii str. 'Sheila Smith' 5648661 YP_001494528.1 CDS mnmA NC_009882.1 413781 414878 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 413781..414878 Rickettsia rickettsii str. 'Sheila Smith' 5648706 YP_001494529.1 CDS A1G_02340 NC_009882.1 414881 415036 D hypothetical protein 414881..415036 Rickettsia rickettsii str. 'Sheila Smith' 5648707 YP_001494530.1 CDS A1G_02345 NC_009882.1 415008 416405 D COG0531 Amino acid transporters; cationic amino acid transporter-1 415008..416405 Rickettsia rickettsii str. 'Sheila Smith' 5648708 YP_001494531.1 CDS hisS NC_009882.1 416586 417800 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 416586..417800 Rickettsia rickettsii str. 'Sheila Smith' 5648709 YP_001494532.1 CDS A1G_02355 NC_009882.1 418204 418479 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 418204..418479 Rickettsia rickettsii str. 'Sheila Smith' 5648710 YP_001494533.1 CDS A1G_02360 NC_009882.1 418652 418861 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; hypothetical protein 418652..418861 Rickettsia rickettsii str. 'Sheila Smith' 5648711 YP_001494534.1 CDS A1G_02365 NC_009882.1 419282 419725 R hypothetical protein complement(419282..419725) Rickettsia rickettsii str. 'Sheila Smith' 5648712 YP_001494535.1 CDS A1G_02380 NC_009882.1 420906 421175 R hypothetical protein complement(420906..421175) Rickettsia rickettsii str. 'Sheila Smith' 5648713 YP_001494536.1 CDS A1G_02385 NC_009882.1 421487 421714 R hypothetical protein complement(421487..421714) Rickettsia rickettsii str. 'Sheila Smith' 5648714 YP_001494537.1 CDS A1G_02390 NC_009882.1 421757 421939 R hypothetical protein complement(421757..421939) Rickettsia rickettsii str. 'Sheila Smith' 5648715 YP_001494538.1 CDS A1G_02395 NC_009882.1 422102 422320 R hypothetical protein complement(422102..422320) Rickettsia rickettsii str. 'Sheila Smith' 5648716 YP_001494539.1 CDS A1G_02400 NC_009882.1 422674 423399 D COG0811 Biopolymer transport proteins; tolQ protein 422674..423399 Rickettsia rickettsii str. 'Sheila Smith' 5647663 YP_001494540.1 CDS A1G_02405 NC_009882.1 423399 423830 D COG0848 Biopolymer transport protein; tolR protein 423399..423830 Rickettsia rickettsii str. 'Sheila Smith' 5647664 YP_001494541.1 CDS A1G_02410 NC_009882.1 423820 424791 D periplasmic protein TonB 423820..424791 Rickettsia rickettsii str. 'Sheila Smith' 5647665 YP_001494542.1 CDS A1G_02415 NC_009882.1 424989 425186 R hypothetical protein complement(424989..425186) Rickettsia rickettsii str. 'Sheila Smith' 5647666 YP_001494543.1 CDS A1G_02420 NC_009882.1 425710 426417 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 425710..426417 Rickettsia rickettsii str. 'Sheila Smith' 5647667 YP_001494544.1 CDS A1G_02425 NC_009882.1 426368 427684 R COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter complement(426368..427684) Rickettsia rickettsii str. 'Sheila Smith' 5647668 YP_001494545.1 CDS A1G_02430 NC_009882.1 427823 429358 R COG0845 Membrane-fusion protein; alkaline protease secretion protein AprE complement(427823..429358) Rickettsia rickettsii str. 'Sheila Smith' 5647669 YP_001494546.1 CDS A1G_02435 NC_009882.1 429542 431296 R COG4618 ABC-type protease/lipase transport system, ATPase and permease components; alkaline protease secretion ATP-binding protein AprD complement(429542..431296) Rickettsia rickettsii str. 'Sheila Smith' 5647670 YP_001494547.1 CDS A1G_02440 NC_009882.1 431305 432321 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(431305..432321) Rickettsia rickettsii str. 'Sheila Smith' 5647671 YP_001494548.1 CDS A1G_02445 NC_009882.1 432314 432673 R COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; protein kinase C inhibitor 1 complement(432314..432673) Rickettsia rickettsii str. 'Sheila Smith' 5647672 YP_001494549.1 CDS A1G_02450 NC_009882.1 432871 433224 R hypothetical protein complement(432871..433224) Rickettsia rickettsii str. 'Sheila Smith' 5647673 YP_001494550.1 CDS A1G_02455 NC_009882.1 433478 434026 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 433478..434026 Rickettsia rickettsii str. 'Sheila Smith' 5648007 YP_001494551.1 CDS hslU NC_009882.1 434023 435375 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 434023..435375 Rickettsia rickettsii str. 'Sheila Smith' 5648008 YP_001494552.1 CDS A1G_02475 NC_009882.1 436964 437104 D hypothetical protein 436964..437104 Rickettsia rickettsii str. 'Sheila Smith' 5648009 YP_001494553.1 CDS A1G_02480 NC_009882.1 437161 437346 D hypothetical protein 437161..437346 Rickettsia rickettsii str. 'Sheila Smith' 5648010 YP_001494554.1 CDS A1G_02485 NC_009882.1 437322 437912 D COG5464 Uncharacterized conserved protein; hypothetical protein 437322..437912 Rickettsia rickettsii str. 'Sheila Smith' 5648011 YP_001494555.1 CDS lpxB NC_009882.1 437922 439262 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 437922..439262 Rickettsia rickettsii str. 'Sheila Smith' 5648012 YP_001494556.1 CDS A1G_02495 NC_009882.1 439259 439531 R hypothetical protein complement(439259..439531) Rickettsia rickettsii str. 'Sheila Smith' 5648013 YP_001494557.1 CDS A1G_02500 NC_009882.1 439880 440899 D COG1559 Predicted periplasmic solute-binding protein; hypothetical protein 439880..440899 Rickettsia rickettsii str. 'Sheila Smith' 5648014 YP_001494558.1 CDS cyaY NC_009882.1 441039 441350 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 441039..441350 Rickettsia rickettsii str. 'Sheila Smith' 5648015 YP_001494559.1 CDS A1G_02520 NC_009882.1 442465 442941 D hypothetical protein 442465..442941 Rickettsia rickettsii str. 'Sheila Smith' 5648016 YP_001494560.1 CDS A1G_02525 NC_009882.1 443651 444028 D hypothetical protein 443651..444028 Rickettsia rickettsii str. 'Sheila Smith' 5648017 YP_001494561.1 CDS A1G_02530 NC_009882.1 444127 444321 D hypothetical protein 444127..444321 Rickettsia rickettsii str. 'Sheila Smith' 5647974 YP_001494562.1 CDS gltX NC_009882.1 444421 445764 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(444421..445764) Rickettsia rickettsii str. 'Sheila Smith' 5647975 YP_001494563.1 CDS A1G_02540 NC_009882.1 445873 448203 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(445873..448203) Rickettsia rickettsii str. 'Sheila Smith' 5647976 YP_001494564.1 CDS A1G_02555 NC_009882.1 449622 450224 R COG0450 Peroxiredoxin; thioredoxin peroxidase 1 complement(449622..450224) Rickettsia rickettsii str. 'Sheila Smith' 5647977 YP_001494565.1 CDS A1G_02560 NC_009882.1 450306 451244 R COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein complement(450306..451244) Rickettsia rickettsii str. 'Sheila Smith' 5647978 YP_001494566.1 CDS A1G_02565 NC_009882.1 451318 451548 R COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; hypothetical protein complement(451318..451548) Rickettsia rickettsii str. 'Sheila Smith' 5647979 YP_001494567.1 CDS A1G_02570 NC_009882.1 451615 453183 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein complement(451615..453183) Rickettsia rickettsii str. 'Sheila Smith' 5647980 YP_001494568.1 CDS A1G_02575 NC_009882.1 453219 453683 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 453219..453683 Rickettsia rickettsii str. 'Sheila Smith' 5647981 YP_001494569.1 CDS A1G_02580 NC_009882.1 453950 454111 D COG3093 Plasmid maintenance system antidote protein; plasmid maintenance system antidote protein 453950..454111 Rickettsia rickettsii str. 'Sheila Smith' 5647982 YP_001494570.1 CDS A1G_02585 NC_009882.1 454095 454184 D hypothetical protein 454095..454184 Rickettsia rickettsii str. 'Sheila Smith' 5647983 YP_001494571.1 CDS A1G_02590 NC_009882.1 454282 455136 D COG1091 dTDP-4-dehydrorhamnose reductase; putative dTDP-4-dehydrorhamnose reductase 454282..455136 Rickettsia rickettsii str. 'Sheila Smith' 5647984 YP_001494572.1 CDS A1G_02595 NC_009882.1 455319 456344 D COG1086 Predicted nucleoside-diphosphate sugar epimerases; capD protein 455319..456344 Rickettsia rickettsii str. 'Sheila Smith' 5648421 YP_001494573.1 CDS A1G_02600 NC_009882.1 456337 457470 D COG0381 UDP-N-acetylglucosamine 2-epimerase; putative UDP-N-acetylglucosamine 2-epimerase 456337..457470 Rickettsia rickettsii str. 'Sheila Smith' 5648422 YP_001494574.1 CDS A1G_02605 NC_009882.1 457439 458776 D hypothetical protein 457439..458776 Rickettsia rickettsii str. 'Sheila Smith' 5648423 YP_001494575.1 CDS A1G_02610 NC_009882.1 458792 459277 D COG0500 SAM-dependent methyltransferases; hypothetical protein 458792..459277 Rickettsia rickettsii str. 'Sheila Smith' 5648424 YP_001494576.1 CDS A1G_02615 NC_009882.1 459797 461527 D COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 459797..461527 Rickettsia rickettsii str. 'Sheila Smith' 5648425 YP_001494577.1 CDS A1G_02620 NC_009882.1 461532 462530 R COG0845 Membrane-fusion protein; hypothetical protein complement(461532..462530) Rickettsia rickettsii str. 'Sheila Smith' 5648426 YP_001494578.1 CDS A1G_02625 NC_009882.1 462623 463417 R hypothetical protein complement(462623..463417) Rickettsia rickettsii str. 'Sheila Smith' 5648427 YP_001494579.1 CDS A1G_02630 NC_009882.1 463427 464194 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein complement(463427..464194) Rickettsia rickettsii str. 'Sheila Smith' 5648428 YP_001494580.1 CDS A1G_02635 NC_009882.1 464227 465399 D COG0438 Glycosyltransferase; glycosyltransferase 464227..465399 Rickettsia rickettsii str. 'Sheila Smith' 5648429 YP_001494581.1 CDS A1G_02640 NC_009882.1 465886 466089 R hypothetical protein complement(465886..466089) Rickettsia rickettsii str. 'Sheila Smith' 5648430 YP_001494582.1 CDS A1G_02645 NC_009882.1 466222 466509 R hypothetical protein complement(466222..466509) Rickettsia rickettsii str. 'Sheila Smith' 5648431 YP_001494583.1 CDS rpsD NC_009882.1 467831 468448 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(467831..468448) Rickettsia rickettsii str. 'Sheila Smith' 5647696 YP_001494584.1 CDS A1G_02655 NC_009882.1 468573 469490 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 468573..469490 Rickettsia rickettsii str. 'Sheila Smith' 5647697 YP_001494585.1 CDS A1G_02660 NC_009882.1 469772 470440 R COG1533 DNA repair photolyase; putative lyase complement(469772..470440) Rickettsia rickettsii str. 'Sheila Smith' 5647698 YP_001494586.1 CDS A1G_02665 NC_009882.1 470640 470855 D hypothetical protein 470640..470855 Rickettsia rickettsii str. 'Sheila Smith' 5647699 YP_001494587.1 CDS A1G_02670 NC_009882.1 470927 471361 D COG0457 FOG: TPR repeat; hypothetical protein 470927..471361 Rickettsia rickettsii str. 'Sheila Smith' 5647700 YP_001494588.1 CDS A1G_02675 NC_009882.1 471502 473994 R COG2982 Uncharacterized protein involved in outer membrane biogenesis; outer membrane assembly protein complement(471502..473994) Rickettsia rickettsii str. 'Sheila Smith' 5647701 YP_001494589.1 CDS rimM NC_009882.1 474342 474839 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(474342..474839) Rickettsia rickettsii str. 'Sheila Smith' 5647702 YP_001494590.1 CDS A1G_02685 NC_009882.1 474902 477532 D hypothetical protein 474902..477532 Rickettsia rickettsii str. 'Sheila Smith' 5647703 YP_001494591.1 CDS A1G_02690 NC_009882.1 477545 477787 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 477545..477787 Rickettsia rickettsii str. 'Sheila Smith' 5647704 YP_001494592.1 CDS A1G_02695 NC_009882.1 477935 478399 D COG5304 Uncharacterized protein conserved in bacteria; hypothetical protein 477935..478399 Rickettsia rickettsii str. 'Sheila Smith' 5647705 YP_001494593.1 CDS A1G_02715 NC_009882.1 479139 479690 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(479139..479690) Rickettsia rickettsii str. 'Sheila Smith' 5647706 YP_001494594.1 CDS A1G_02720 NC_009882.1 479683 479886 R COG2350 Uncharacterized protein conserved in bacteria; hypothetical protein complement(479683..479886) Rickettsia rickettsii str. 'Sheila Smith' 5648295 YP_001494595.1 CDS A1G_02725 NC_009882.1 479917 480069 D hypothetical protein 479917..480069 Rickettsia rickettsii str. 'Sheila Smith' 5648296 YP_001494596.1 CDS A1G_02730 NC_009882.1 479991 480236 R COG0759 Uncharacterized conserved protein; hypothetical protein complement(479991..480236) Rickettsia rickettsii str. 'Sheila Smith' 5648297 YP_001494597.1 CDS A1G_02735 NC_009882.1 480229 480732 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(480229..480732) Rickettsia rickettsii str. 'Sheila Smith' 5648298 YP_001494598.1 CDS A1G_02740 NC_009882.1 481145 482320 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(481145..482320) Rickettsia rickettsii str. 'Sheila Smith' 5648299 YP_001494599.1 CDS A1G_02745 NC_009882.1 482419 483147 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(482419..483147) Rickettsia rickettsii str. 'Sheila Smith' 5648300 YP_001494600.1 CDS A1G_02750 NC_009882.1 483125 483649 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(483125..483649) Rickettsia rickettsii str. 'Sheila Smith' 5648301 YP_001494601.1 CDS A1G_02755 NC_009882.1 483654 484184 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(483654..484184) Rickettsia rickettsii str. 'Sheila Smith' 5648302 YP_001494602.1 CDS A1G_02760 NC_009882.1 484184 485419 R COG3307 Lipid A core - O-antigen ligase and related enzymes; hypothetical protein complement(484184..485419) Rickettsia rickettsii str. 'Sheila Smith' 5648303 YP_001494603.1 CDS A1G_02765 NC_009882.1 485420 485893 R COG4765 Uncharacterized protein conserved in bacteria; hypothetical protein complement(485420..485893) Rickettsia rickettsii str. 'Sheila Smith' 5648304 YP_001494604.1 CDS xerD NC_009882.1 487702 488622 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 487702..488622 Rickettsia rickettsii str. 'Sheila Smith' 5647442 YP_001494605.1 CDS A1G_02790 NC_009882.1 488723 489724 D hypothetical protein 488723..489724 Rickettsia rickettsii str. 'Sheila Smith' 5647443 YP_001494606.1 CDS A1G_02795 NC_009882.1 489832 490995 D hypothetical protein 489832..490995 Rickettsia rickettsii str. 'Sheila Smith' 5647444 YP_001494607.1 CDS A1G_02800 NC_009882.1 491192 491974 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(491192..491974) Rickettsia rickettsii str. 'Sheila Smith' 5647445 YP_001494608.1 CDS lnt NC_009882.1 492050 493549 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 492050..493549 Rickettsia rickettsii str. 'Sheila Smith' 5647446 YP_001494609.1 CDS A1G_02810 NC_009882.1 493668 493814 D hypothetical protein 493668..493814 Rickettsia rickettsii str. 'Sheila Smith' 5647447 YP_001494610.1 CDS A1G_02815 NC_009882.1 494253 495056 D COG3023 Negative regulator of beta-lactamase expression; hypothetical protein 494253..495056 Rickettsia rickettsii str. 'Sheila Smith' 5647448 YP_001494611.1 CDS A1G_02820 NC_009882.1 495812 496729 D COG2984 ABC-type uncharacterized transport system, periplasmic component; hypothetical protein 495812..496729 Rickettsia rickettsii str. 'Sheila Smith' 5647449 YP_001494612.1 CDS A1G_02825 NC_009882.1 496734 497573 D COG4120 ABC-type uncharacterized transport system, permease component; ABC transporter permease 496734..497573 Rickettsia rickettsii str. 'Sheila Smith' 5647450 YP_001494613.1 CDS A1G_02830 NC_009882.1 497570 498292 D COG1101 ABC-type uncharacterized transport system, ATPase component; putative ABC transporter ATP-binding protein 497570..498292 Rickettsia rickettsii str. 'Sheila Smith' 5647451 YP_001494614.1 CDS A1G_02835 NC_009882.1 498383 498787 R hypothetical protein complement(498383..498787) Rickettsia rickettsii str. 'Sheila Smith' 5647600 YP_001494615.1 CDS A1G_02840 NC_009882.1 498807 499229 R COG0666 FOG: Ankyrin repeat; hypothetical protein complement(498807..499229) Rickettsia rickettsii str. 'Sheila Smith' 5647601 YP_001494616.1 CDS A1G_02845 NC_009882.1 499480 499632 D hypothetical protein 499480..499632 Rickettsia rickettsii str. 'Sheila Smith' 5647602 YP_001494617.1 CDS A1G_02850 NC_009882.1 499601 499753 R hypothetical protein complement(499601..499753) Rickettsia rickettsii str. 'Sheila Smith' 5647603 YP_001494618.1 CDS A1G_02855 NC_009882.1 499849 499980 R hypothetical protein complement(499849..499980) Rickettsia rickettsii str. 'Sheila Smith' 5647604 YP_001494619.1 CDS A1G_02860 NC_009882.1 500071 500589 R COG1495 Disulfide bond formation protein DsbB; hypothetical protein complement(500071..500589) Rickettsia rickettsii str. 'Sheila Smith' 5647605 YP_001494620.1 CDS lysK NC_009882.1 500770 502338 D class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 500770..502338 Rickettsia rickettsii str. 'Sheila Smith' 5647606 YP_001494621.1 CDS A1G_02870 NC_009882.1 502472 503404 D COG0679 Predicted permeases; hypothetical protein 502472..503404 Rickettsia rickettsii str. 'Sheila Smith' 5647607 YP_001494622.1 CDS A1G_02875 NC_009882.1 503544 505844 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 503544..505844 Rickettsia rickettsii str. 'Sheila Smith' 5647608 YP_001494623.1 CDS A1G_02880 NC_009882.1 505885 506277 D hypothetical protein 505885..506277 Rickettsia rickettsii str. 'Sheila Smith' 5647609 YP_001494624.1 CDS A1G_02885 NC_009882.1 506448 506747 D hypothetical protein 506448..506747 Rickettsia rickettsii str. 'Sheila Smith' 5647610 YP_001494625.1 CDS A1G_02890 NC_009882.1 506953 507339 R COG4374 Uncharacterized protein conserved in bacteria; hypothetical protein complement(506953..507339) Rickettsia rickettsii str. 'Sheila Smith' 5648224 YP_001494626.1 CDS A1G_02895 NC_009882.1 507332 507580 R COG2002 Regulators of stationary/sporulation gene expression; hypothetical protein complement(507332..507580) Rickettsia rickettsii str. 'Sheila Smith' 5648225 YP_001494627.1 CDS A1G_02900 NC_009882.1 507813 509030 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 507813..509030 Rickettsia rickettsii str. 'Sheila Smith' 5648226 YP_001494628.1 CDS A1G_02905 NC_009882.1 509229 509414 R hypothetical protein complement(509229..509414) Rickettsia rickettsii str. 'Sheila Smith' 5648227 YP_001494629.1 CDS A1G_02910 NC_009882.1 509550 509879 R hypothetical protein complement(509550..509879) Rickettsia rickettsii str. 'Sheila Smith' 5648228 YP_001494630.1 CDS A1G_02915 NC_009882.1 509911 510126 R hypothetical protein complement(509911..510126) Rickettsia rickettsii str. 'Sheila Smith' 5648229 YP_001494631.1 CDS A1G_02920 NC_009882.1 510172 510498 R COG0541 Signal recognition particle GTPase; hypothetical protein complement(510172..510498) Rickettsia rickettsii str. 'Sheila Smith' 5648230 YP_001494632.1 CDS A1G_02925 NC_009882.1 511024 511254 D hypothetical protein 511024..511254 Rickettsia rickettsii str. 'Sheila Smith' 5648231 YP_001494633.1 CDS A1G_02940 NC_009882.1 511885 511977 R hypothetical protein complement(511885..511977) Rickettsia rickettsii str. 'Sheila Smith' 5648232 YP_001494634.1 CDS A1G_02945 NC_009882.1 512056 512409 R hypothetical protein complement(512056..512409) Rickettsia rickettsii str. 'Sheila Smith' 5648233 YP_001494635.1 CDS A1G_02950 NC_009882.1 512542 513486 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(512542..513486) Rickettsia rickettsii str. 'Sheila Smith' 5648234 YP_001494636.1 CDS A1G_02955 NC_009882.1 513850 514026 D COG0666 FOG: Ankyrin repeat; ankyrin repeat-containing protein 513850..514026 Rickettsia rickettsii str. 'Sheila Smith' 5647924 YP_001494637.1 CDS A1G_02960 NC_009882.1 514056 514307 D COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; ankyrin repeat-containing protein 514056..514307 Rickettsia rickettsii str. 'Sheila Smith' 5647925 YP_001494638.1 CDS A1G_02965 NC_009882.1 514941 516464 R COG3202 ATP/ADP translocase; ADP,ATP carrier protein complement(514941..516464) Rickettsia rickettsii str. 'Sheila Smith' 5647926 YP_001494639.1 CDS pyrG NC_009882.1 516674 518287 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(516674..518287) Rickettsia rickettsii str. 'Sheila Smith' 5647927 YP_001494640.1 CDS A1G_02975 NC_009882.1 518290 519015 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(518290..519015) Rickettsia rickettsii str. 'Sheila Smith' 5647928 YP_001494641.1 CDS A1G_02980 NC_009882.1 519415 519522 D hypothetical protein 519415..519522 Rickettsia rickettsii str. 'Sheila Smith' 5647931 YP_001494642.1 CDS A1G_02985 NC_009882.1 520257 521780 D hypothetical protein 520257..521780 Rickettsia rickettsii str. 'Sheila Smith' 5647932 YP_001494643.1 CDS folE NC_009882.1 521773 522342 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 521773..522342 Rickettsia rickettsii str. 'Sheila Smith' 5648235 YP_001494644.1 CDS A1G_02995 NC_009882.1 522507 523787 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 522507..523787 Rickettsia rickettsii str. 'Sheila Smith' 5648236 YP_001494645.1 CDS A1G_03000 NC_009882.1 524000 524968 D COG3177 Uncharacterized conserved protein; hypothetical protein 524000..524968 Rickettsia rickettsii str. 'Sheila Smith' 5648237 YP_001494646.1 CDS A1G_03005 NC_009882.1 525229 525366 D hypothetical protein 525229..525366 Rickettsia rickettsii str. 'Sheila Smith' 5648238 YP_001494647.1 CDS ruvA NC_009882.1 525371 525985 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 525371..525985 Rickettsia rickettsii str. 'Sheila Smith' 5648239 YP_001494648.1 CDS A1G_03015 NC_009882.1 526267 526467 D hypothetical protein 526267..526467 Rickettsia rickettsii str. 'Sheila Smith' 5648240 YP_001494649.1 CDS A1G_03020 NC_009882.1 526501 526902 D hypothetical protein 526501..526902 Rickettsia rickettsii str. 'Sheila Smith' 5648241 YP_001494650.1 CDS ruvB NC_009882.1 526978 528006 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 526978..528006 Rickettsia rickettsii str. 'Sheila Smith' 5648242 YP_001494651.1 CDS A1G_03030 NC_009882.1 527999 529762 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein 527999..529762 Rickettsia rickettsii str. 'Sheila Smith' 5648243 YP_001494652.1 CDS A1G_03035 NC_009882.1 529953 531197 D COG0477 Permeases of the major facilitator superfamily; AmpG protein 529953..531197 Rickettsia rickettsii str. 'Sheila Smith' 5648244 YP_001494653.1 CDS A1G_03040 NC_009882.1 531374 532294 D COG1686 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein dacF 531374..532294 Rickettsia rickettsii str. 'Sheila Smith' 5648662 YP_001494654.1 CDS A1G_03045 NC_009882.1 532466 533428 R COG0797 Lipoproteins; rare lipoprotein A complement(532466..533428) Rickettsia rickettsii str. 'Sheila Smith' 5648663 YP_001494655.1 CDS A1G_03050 NC_009882.1 533406 533894 R COG2823 Predicted periplasmic or secreted lipoprotein; hypothetical protein complement(533406..533894) Rickettsia rickettsii str. 'Sheila Smith' 5648664 YP_001494656.1 CDS A1G_03055 NC_009882.1 533942 534049 D intracellular septation protein A 533942..534049 Rickettsia rickettsii str. 'Sheila Smith' 5648665 YP_001494657.1 CDS A1G_03060 NC_009882.1 534324 534866 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(534324..534866) Rickettsia rickettsii str. 'Sheila Smith' 5648666 YP_001494658.1 CDS A1G_03065 NC_009882.1 534896 535744 R COG0672 High-affinity Fe2+/Pb2+ permease; hypothetical protein complement(534896..535744) Rickettsia rickettsii str. 'Sheila Smith' 5648667 YP_001494659.1 CDS A1G_03070 NC_009882.1 535754 536134 R hypothetical protein complement(535754..536134) Rickettsia rickettsii str. 'Sheila Smith' 5648668 YP_001494660.1 CDS A1G_03075 NC_009882.1 536325 537320 R COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1; hypothetical protein complement(536325..537320) Rickettsia rickettsii str. 'Sheila Smith' 5648669 YP_001494661.1 CDS A1G_03080 NC_009882.1 537459 538085 D COG3485 Protocatechuate 3,4-dioxygenase beta subunit; hypothetical protein 537459..538085 Rickettsia rickettsii str. 'Sheila Smith' 5648670 YP_001494662.1 CDS A1G_03085 NC_009882.1 538293 538937 D COG0526 Thiol-disulfide isomerase and thioredoxins; thiol:disulfide interchange protein tlpA 538293..538937 Rickettsia rickettsii str. 'Sheila Smith' 5648671 YP_001494663.1 CDS A1G_03090 NC_009882.1 539102 540016 D COG0616 Periplasmic serine proteases (ClpP class); protease sohB 539102..540016 Rickettsia rickettsii str. 'Sheila Smith' 5648672 YP_001494664.1 CDS dut NC_009882.1 540018 540464 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 540018..540464 Rickettsia rickettsii str. 'Sheila Smith' 5647902 YP_001494665.1 CDS A1G_03100 NC_009882.1 540681 542642 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative soluble lytic murein transglycosylase 540681..542642 Rickettsia rickettsii str. 'Sheila Smith' 5647903 YP_001494666.1 CDS A1G_03105 NC_009882.1 542729 543688 D hypothetical protein 542729..543688 Rickettsia rickettsii str. 'Sheila Smith' 5647904 YP_001494667.1 CDS A1G_03110 NC_009882.1 543884 544831 D COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; microcin C7 self-immunity protein 543884..544831 Rickettsia rickettsii str. 'Sheila Smith' 5647905 YP_001494668.1 CDS A1G_03115 NC_009882.1 545053 547569 R COG2887 RecB family exonuclease; hypothetical protein complement(545053..547569) Rickettsia rickettsii str. 'Sheila Smith' 5647906 YP_001494669.1 CDS A1G_03120 NC_009882.1 547828 548109 D hypothetical protein 547828..548109 Rickettsia rickettsii str. 'Sheila Smith' 5647907 YP_001494670.1 CDS A1G_03125 NC_009882.1 548113 548841 R COG2071 Predicted glutamine amidotransferases; hypothetical protein complement(548113..548841) Rickettsia rickettsii str. 'Sheila Smith' 5647908 YP_001494671.1 CDS A1G_03130 NC_009882.1 549048 550649 R COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; cytochrome c oxidase polypeptide I complement(549048..550649) Rickettsia rickettsii str. 'Sheila Smith' 5647909 YP_001494672.1 CDS A1G_03135 NC_009882.1 550655 551038 R COG0110 Acetyltransferase (isoleucine patch superfamily); hypothetical protein complement(550655..551038) Rickettsia rickettsii str. 'Sheila Smith' 5647910 YP_001494673.1 CDS A1G_03140 NC_009882.1 551231 552178 R COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2; cytochrome c oxidase polypeptide II complement(551231..552178) Rickettsia rickettsii str. 'Sheila Smith' 5647911 YP_001494674.1 CDS A1G_03145 NC_009882.1 552989 554353 D COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 552989..554353 Rickettsia rickettsii str. 'Sheila Smith' 5647912 YP_001494675.1 CDS lspA NC_009882.1 554615 555154 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 554615..555154 Rickettsia rickettsii str. 'Sheila Smith' 5648587 YP_001494676.1 CDS A1G_03155 NC_009882.1 555321 555569 D hypothetical protein 555321..555569 Rickettsia rickettsii str. 'Sheila Smith' 5648588 YP_001494677.1 CDS murD NC_009882.1 555741 557243 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 555741..557243 Rickettsia rickettsii str. 'Sheila Smith' 5648589 YP_001494678.1 CDS A1G_03165 NC_009882.1 557375 558508 D COG0772 Bacterial cell division membrane protein; cell division protein FtsW 557375..558508 Rickettsia rickettsii str. 'Sheila Smith' 5648590 YP_001494679.1 CDS murG NC_009882.1 558505 559635 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 558505..559635 Rickettsia rickettsii str. 'Sheila Smith' 5648591 YP_001494680.1 CDS A1G_03175 NC_009882.1 560030 560680 D hypothetical protein 560030..560680 Rickettsia rickettsii str. 'Sheila Smith' 5648592 YP_001494681.1 CDS A1G_03180 NC_009882.1 560838 560945 D hypothetical protein 560838..560945 Rickettsia rickettsii str. 'Sheila Smith' 5648593 YP_001494682.1 CDS A1G_03185 NC_009882.1 560974 561093 D hypothetical protein 560974..561093 Rickettsia rickettsii str. 'Sheila Smith' 5648594 YP_001494683.1 CDS A1G_03190 NC_009882.1 561090 561239 D hypothetical protein 561090..561239 Rickettsia rickettsii str. 'Sheila Smith' 5648595 YP_001494684.1 CDS A1G_03195 NC_009882.1 561253 561429 D hypothetical protein 561253..561429 Rickettsia rickettsii str. 'Sheila Smith' 5648596 YP_001494685.1 CDS A1G_03200 NC_009882.1 561637 561858 R COG0841 Cation/multidrug efflux pump; hypothetical protein complement(561637..561858) Rickettsia rickettsii str. 'Sheila Smith' 5648326 YP_001494686.1 CDS A1G_03205 NC_009882.1 561855 562562 R COG0841 Cation/multidrug efflux pump; RND family efflux transporter complement(561855..562562) Rickettsia rickettsii str. 'Sheila Smith' 5648327 YP_001494687.1 CDS A1G_03210 NC_009882.1 562569 563036 R COG0841 Cation/multidrug efflux pump; hypothetical protein complement(562569..563036) Rickettsia rickettsii str. 'Sheila Smith' 5648328 YP_001494688.1 CDS A1G_03215 NC_009882.1 563006 563632 R COG0841 Cation/multidrug efflux pump; RND family efflux transporter complement(563006..563632) Rickettsia rickettsii str. 'Sheila Smith' 5648329 YP_001494689.1 CDS A1G_03220 NC_009882.1 563830 564159 R COG0841 Cation/multidrug efflux pump; hypothetical protein complement(563830..564159) Rickettsia rickettsii str. 'Sheila Smith' 5648330 YP_001494690.1 CDS A1G_03235 NC_009882.1 565725 565901 R hypothetical protein complement(565725..565901) Rickettsia rickettsii str. 'Sheila Smith' 5648331 YP_001494691.1 CDS A1G_03250 NC_009882.1 567279 568298 R COG0438 Glycosyltransferase; capM protein complement(567279..568298) Rickettsia rickettsii str. 'Sheila Smith' 5648332 YP_001494692.1 CDS A1G_03255 NC_009882.1 568302 568589 R hypothetical protein complement(568302..568589) Rickettsia rickettsii str. 'Sheila Smith' 5648333 YP_001494693.1 CDS dapF NC_009882.1 569277 570089 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 569277..570089 Rickettsia rickettsii str. 'Sheila Smith' 5648334 YP_001494694.1 CDS A1G_03275 NC_009882.1 570064 571329 D COG0621 2-methylthioadenine synthetase; hypothetical protein 570064..571329 Rickettsia rickettsii str. 'Sheila Smith' 5648335 YP_001494695.1 CDS pheS NC_009882.1 571571 572620 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 571571..572620 Rickettsia rickettsii str. 'Sheila Smith' 5648336 YP_001494696.1 CDS pheT NC_009882.1 572617 575073 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 572617..575073 Rickettsia rickettsii str. 'Sheila Smith' 5648684 YP_001494697.1 CDS A1G_03290 NC_009882.1 575078 576217 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 575078..576217 Rickettsia rickettsii str. 'Sheila Smith' 5648685 YP_001494698.1 CDS A1G_03295 NC_009882.1 576573 577076 D hypothetical protein 576573..577076 Rickettsia rickettsii str. 'Sheila Smith' 5648686 YP_001494699.1 CDS leuS NC_009882.1 577205 579712 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 577205..579712 Rickettsia rickettsii str. 'Sheila Smith' 5648687 YP_001494700.1 CDS A1G_03305 NC_009882.1 580231 580386 R hypothetical protein complement(580231..580386) Rickettsia rickettsii str. 'Sheila Smith' 5648688 YP_001494701.1 CDS A1G_03310 NC_009882.1 580790 581401 R COG0349 Ribonuclease D; ribonuclease D complement(580790..581401) Rickettsia rickettsii str. 'Sheila Smith' 5648689 YP_001494702.1 CDS A1G_03315 NC_009882.1 581550 581855 R COG2919 Septum formation initiator; hypothetical protein complement(581550..581855) Rickettsia rickettsii str. 'Sheila Smith' 5648690 YP_001494703.1 CDS A1G_03320 NC_009882.1 581852 582544 R COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase complement(581852..582544) Rickettsia rickettsii str. 'Sheila Smith' 5648691 YP_001494704.1 CDS A1G_03325 NC_009882.1 582504 583184 R COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthetase complement(582504..583184) Rickettsia rickettsii str. 'Sheila Smith' 5648692 YP_001494705.1 CDS A1G_03330 NC_009882.1 583357 584787 R COG0642 Signal transduction histidine kinase; osmolarity sensor protein envZ complement(583357..584787) Rickettsia rickettsii str. 'Sheila Smith' 5648693 YP_001494706.1 CDS A1G_03335 NC_009882.1 584771 585451 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; petR protein complement(584771..585451) Rickettsia rickettsii str. 'Sheila Smith' 5648694 YP_001494707.1 CDS A1G_03340 NC_009882.1 585663 586535 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 585663..586535 Rickettsia rickettsii str. 'Sheila Smith' 5648525 YP_001494708.1 CDS A1G_03345 NC_009882.1 586721 587605 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 586721..587605 Rickettsia rickettsii str. 'Sheila Smith' 5648526 YP_001494709.1 CDS smpB NC_009882.1 587602 588060 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 587602..588060 Rickettsia rickettsii str. 'Sheila Smith' 5648527 YP_001494710.1 CDS A1G_03355 NC_009882.1 588192 588983 D COG1651 Protein-disulfide isomerase; hypothetical protein 588192..588983 Rickettsia rickettsii str. 'Sheila Smith' 5648528 YP_001494711.1 CDS A1G_03360 NC_009882.1 589216 590094 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(589216..590094) Rickettsia rickettsii str. 'Sheila Smith' 5648529 YP_001494712.1 CDS sucC NC_009882.1 590268 591428 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(590268..591428) Rickettsia rickettsii str. 'Sheila Smith' 5648530 YP_001494713.1 CDS A1G_03370 NC_009882.1 591460 591555 R hypothetical protein complement(591460..591555) Rickettsia rickettsii str. 'Sheila Smith' 5648531 YP_001494714.1 CDS A1G_03375 NC_009882.1 591552 591845 R COG5611 Predicted nucleic-acid-binding protein, contains PIN domain; hypothetical protein complement(591552..591845) Rickettsia rickettsii str. 'Sheila Smith' 5648532 YP_001494715.1 CDS A1G_03380 NC_009882.1 591832 592086 R COG2002 Regulators of stationary/sporulation gene expression; transcriptional regulator complement(591832..592086) Rickettsia rickettsii str. 'Sheila Smith' 5648533 YP_001494716.1 CDS A1G_03385 NC_009882.1 592245 592403 R cytochrome b561 family protein complement(592245..592403) Rickettsia rickettsii str. 'Sheila Smith' 5648534 YP_001494717.1 CDS A1G_03390 NC_009882.1 592448 592699 R hypothetical protein complement(592448..592699) Rickettsia rickettsii str. 'Sheila Smith' 5647768 YP_001494718.1 CDS A1G_03395 NC_009882.1 592866 594896 R COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; acylamino-acid-releasing enzyme complement(592866..594896) Rickettsia rickettsii str. 'Sheila Smith' 5647769 YP_001494719.1 CDS A1G_03400 NC_009882.1 594984 595619 R COG4395 Uncharacterized protein conserved in bacteria; hypothetical protein complement(594984..595619) Rickettsia rickettsii str. 'Sheila Smith' 5647770 YP_001494720.1 CDS A1G_03405 NC_009882.1 595943 596455 R COG1835 Predicted acyltransferases; hypothetical protein complement(595943..596455) Rickettsia rickettsii str. 'Sheila Smith' 5647771 YP_001494721.1 CDS A1G_03410 NC_009882.1 596644 596871 R COG1835 Predicted acyltransferases; hypothetical protein complement(596644..596871) Rickettsia rickettsii str. 'Sheila Smith' 5647772 YP_001494722.1 CDS rbfA NC_009882.1 597048 597410 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(597048..597410) Rickettsia rickettsii str. 'Sheila Smith' 5647773 YP_001494723.1 CDS A1G_03420 NC_009882.1 597407 597841 R COG1238 Predicted membrane protein; hypothetical protein complement(597407..597841) Rickettsia rickettsii str. 'Sheila Smith' 5647774 YP_001494724.1 CDS A1G_03425 NC_009882.1 597984 598505 D COG1714 Predicted membrane protein/domain; hypothetical protein 597984..598505 Rickettsia rickettsii str. 'Sheila Smith' 5647775 YP_001494725.1 CDS recR NC_009882.1 598653 599258 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 598653..599258 Rickettsia rickettsii str. 'Sheila Smith' 5647776 YP_001494726.1 CDS A1G_03435 NC_009882.1 599373 599573 R hypothetical protein complement(599373..599573) Rickettsia rickettsii str. 'Sheila Smith' 5647777 YP_001494727.1 CDS A1G_03440 NC_009882.1 599897 600067 R hypothetical protein complement(599897..600067) Rickettsia rickettsii str. 'Sheila Smith' 5647778 YP_001494728.1 CDS A1G_03445 NC_009882.1 600281 600448 D hypothetical protein 600281..600448 Rickettsia rickettsii str. 'Sheila Smith' 5647779 YP_001494729.1 CDS A1G_03450 NC_009882.1 600452 600565 R hypothetical protein complement(600452..600565) Rickettsia rickettsii str. 'Sheila Smith' 5647780 YP_001494730.1 CDS A1G_03455 NC_009882.1 600709 600942 R hypothetical protein complement(600709..600942) Rickettsia rickettsii str. 'Sheila Smith' 5647781 YP_001494731.1 CDS ppnK NC_009882.1 601122 601889 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(601122..601889) Rickettsia rickettsii str. 'Sheila Smith' 5647782 YP_001494732.1 CDS A1G_03465 NC_009882.1 601976 603658 D COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily; hypothetical protein 601976..603658 Rickettsia rickettsii str. 'Sheila Smith' 5647783 YP_001494733.1 CDS gpsA NC_009882.1 603906 604922 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 603906..604922 Rickettsia rickettsii str. 'Sheila Smith' 5647784 YP_001494734.1 CDS A1G_03475 NC_009882.1 605108 606037 D COG0679 Predicted permeases; permease 605108..606037 Rickettsia rickettsii str. 'Sheila Smith' 5647785 YP_001494735.1 CDS A1G_03480 NC_009882.1 606106 606978 D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein 606106..606978 Rickettsia rickettsii str. 'Sheila Smith' 5647786 YP_001494736.1 CDS A1G_03485 NC_009882.1 607180 608112 D COG0492 Thioredoxin reductase; thioredoxin reductase 607180..608112 Rickettsia rickettsii str. 'Sheila Smith' 5647787 YP_001494737.1 CDS A1G_03490 NC_009882.1 608404 609831 D COG1012 NAD-dependent aldehyde dehydrogenases; succinate semialdehyde dehydrogenase 608404..609831 Rickettsia rickettsii str. 'Sheila Smith' 5647788 YP_001494738.1 CDS A1G_03495 NC_009882.1 609991 610131 D hypothetical protein 609991..610131 Rickettsia rickettsii str. 'Sheila Smith' 5647789 YP_001494739.1 CDS A1G_03500 NC_009882.1 610155 610331 D hypothetical protein 610155..610331 Rickettsia rickettsii str. 'Sheila Smith' 5648750 YP_001494740.1 CDS A1G_03505 NC_009882.1 610324 611169 D COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase family protein 610324..611169 Rickettsia rickettsii str. 'Sheila Smith' 5648751 YP_001494741.1 CDS A1G_03510 NC_009882.1 611244 613205 D COG0210 Superfamily I DNA and RNA helicases; DNA helicase II 611244..613205 Rickettsia rickettsii str. 'Sheila Smith' 5648752 YP_001494742.1 CDS A1G_03515 NC_009882.1 613271 613630 D hypothetical protein 613271..613630 Rickettsia rickettsii str. 'Sheila Smith' 5648753 YP_001494743.1 CDS A1G_03520 NC_009882.1 613696 613875 D hypothetical protein 613696..613875 Rickettsia rickettsii str. 'Sheila Smith' 5648754 YP_001494744.1 CDS A1G_03525 NC_009882.1 613879 614184 D hypothetical protein 613879..614184 Rickettsia rickettsii str. 'Sheila Smith' 5648755 YP_001494745.1 CDS A1G_03530 NC_009882.1 614235 615587 D hypothetical protein 614235..615587 Rickettsia rickettsii str. 'Sheila Smith' 5648756 YP_001494746.1 CDS A1G_03535 NC_009882.1 615764 616795 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(615764..616795) Rickettsia rickettsii str. 'Sheila Smith' 5648757 YP_001494747.1 CDS A1G_03540 NC_009882.1 616905 619217 D COG0466 ATP-dependent Lon protease, bacterial type; ATP-dependent protease La 616905..619217 Rickettsia rickettsii str. 'Sheila Smith' 5648758 YP_001494748.1 CDS A1G_03555 NC_009882.1 620698 620901 R hypothetical protein complement(620698..620901) Rickettsia rickettsii str. 'Sheila Smith' 5648759 YP_001494749.1 CDS A1G_03560 NC_009882.1 620908 621090 R hypothetical protein complement(620908..621090) Rickettsia rickettsii str. 'Sheila Smith' 5647524 YP_001494750.1 CDS A1G_03570 NC_009882.1 621737 621997 R hypothetical protein complement(621737..621997) Rickettsia rickettsii str. 'Sheila Smith' 5647525 YP_001494751.1 CDS A1G_03575 NC_009882.1 622324 622410 R hypothetical protein complement(622324..622410) Rickettsia rickettsii str. 'Sheila Smith' 5647527 YP_001494752.1 CDS A1G_03580 NC_009882.1 622741 623049 D hypothetical protein 622741..623049 Rickettsia rickettsii str. 'Sheila Smith' 5647528 YP_001494753.1 CDS A1G_03585 NC_009882.1 623166 623744 D COG1544 Ribosome-associated protein Y (PSrp-1); sigma(54) modulation protein 623166..623744 Rickettsia rickettsii str. 'Sheila Smith' 5647529 YP_001494754.1 CDS A1G_03600 NC_009882.1 624291 625157 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(624291..625157) Rickettsia rickettsii str. 'Sheila Smith' 5647530 YP_001494755.1 CDS A1G_03605 NC_009882.1 625294 626316 R COG0492 Thioredoxin reductase; thioredoxin reductase complement(625294..626316) Rickettsia rickettsii str. 'Sheila Smith' 5647531 YP_001494756.1 CDS A1G_03620 NC_009882.1 627516 627755 D COG3121 P pilus assembly protein, chaperone PapD; hypothetical protein 627516..627755 Rickettsia rickettsii str. 'Sheila Smith' 5647532 YP_001494757.1 CDS A1G_03625 NC_009882.1 627940 628293 D COG0045 Succinyl-CoA synthetase, beta subunit; hypothetical protein 627940..628293 Rickettsia rickettsii str. 'Sheila Smith' 5647533 YP_001494758.1 CDS A1G_03630 NC_009882.1 628290 628421 D P pilus assembly protein FimD 628290..628421 Rickettsia rickettsii str. 'Sheila Smith' 5648695 YP_001494759.1 CDS A1G_03635 NC_009882.1 628414 628848 D COG3188 P pilus assembly protein, porin PapC; hypothetical protein 628414..628848 Rickettsia rickettsii str. 'Sheila Smith' 5648696 YP_001494760.1 CDS A1G_03655 NC_009882.1 630368 630772 D COG5430 Uncharacterized secreted protein; hypothetical protein 630368..630772 Rickettsia rickettsii str. 'Sheila Smith' 5648697 YP_001494761.1 CDS A1G_03660 NC_009882.1 631003 631320 D chitin binding domain-containing protein 631003..631320 Rickettsia rickettsii str. 'Sheila Smith' 5648698 YP_001494762.1 CDS A1G_03665 NC_009882.1 631379 631483 D chitin binding domain-containing protein 631379..631483 Rickettsia rickettsii str. 'Sheila Smith' 5648699 YP_001494763.1 CDS A1G_03670 NC_009882.1 632043 633866 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 632043..633866 Rickettsia rickettsii str. 'Sheila Smith' 5648700 YP_001494764.1 CDS A1G_03675 NC_009882.1 634212 634331 D hypothetical protein 634212..634331 Rickettsia rickettsii str. 'Sheila Smith' 5648701 YP_001494765.1 CDS A1G_03680 NC_009882.1 634523 634840 D hypothetical protein 634523..634840 Rickettsia rickettsii str. 'Sheila Smith' 5648702 YP_001494766.1 CDS nrdF NC_009882.1 634696 635682 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 634696..635682 Rickettsia rickettsii str. 'Sheila Smith' 5648703 YP_001494767.1 CDS A1G_03700 NC_009882.1 639443 639595 D hypothetical protein 639443..639595 Rickettsia rickettsii str. 'Sheila Smith' 5648704 YP_001494769.1 CDS A1G_03710 NC_009882.1 639777 639896 D hypothetical protein 639777..639896 Rickettsia rickettsii str. 'Sheila Smith' 5647811 YP_001494770.1 CDS miaA NC_009882.1 640774 641865 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(640774..641865) Rickettsia rickettsii str. 'Sheila Smith' 5647812 YP_001494771.1 CDS A1G_03730 NC_009882.1 642001 642327 R hypothetical protein complement(642001..642327) Rickettsia rickettsii str. 'Sheila Smith' 5647813 YP_001494772.1 CDS A1G_03735 NC_009882.1 642398 643786 R COG1109 Phosphomannomutase; phosphomannomutase complement(642398..643786) Rickettsia rickettsii str. 'Sheila Smith' 5647814 YP_001494773.1 CDS A1G_03740 NC_009882.1 643812 643967 D hypothetical protein 643812..643967 Rickettsia rickettsii str. 'Sheila Smith' 5647815 YP_001494774.1 CDS A1G_03745 NC_009882.1 643957 644679 R COG1137 ABC-type (unclassified) transport system, ATPase component; ABC transporter ATP-binding protein complement(643957..644679) Rickettsia rickettsii str. 'Sheila Smith' 5647816 YP_001494775.1 CDS A1G_03750 NC_009882.1 644862 645278 R COG1934 Uncharacterized protein conserved in bacteria; hypothetical protein complement(644862..645278) Rickettsia rickettsii str. 'Sheila Smith' 5647817 YP_001494776.1 CDS A1G_03755 NC_009882.1 645417 646013 R COG5375 Uncharacterized protein conserved in bacteria; hypothetical protein complement(645417..646013) Rickettsia rickettsii str. 'Sheila Smith' 5647818 YP_001494777.1 CDS A1G_03760 NC_009882.1 646019 646978 R COG0794 Predicted sugar phosphate isomerase involved in capsule formation; kpsF protein complement(646019..646978) Rickettsia rickettsii str. 'Sheila Smith' 5647819 YP_001494778.1 CDS A1G_03765 NC_009882.1 646983 647159 R hypothetical protein complement(646983..647159) Rickettsia rickettsii str. 'Sheila Smith' 5647820 YP_001494779.1 CDS A1G_03770 NC_009882.1 647178 649424 R COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase complement(647178..649424) Rickettsia rickettsii str. 'Sheila Smith' 5647821 YP_001494780.1 CDS rpsO NC_009882.1 649572 649847 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(649572..649847) Rickettsia rickettsii str. 'Sheila Smith' 5647685 YP_001494781.1 CDS truB NC_009882.1 649883 650920 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; proteins in this cluster have Rickettsial repeat elements (RPE) inserts; tRNA pseudouridine synthase B complement(649883..650920) Rickettsia rickettsii str. 'Sheila Smith' 5647686 YP_001494782.1 CDS A1G_03785 NC_009882.1 651005 652540 D COG3202 ATP/ADP translocase; ADP,ATP carrier protein 651005..652540 Rickettsia rickettsii str. 'Sheila Smith' 5647687 YP_001494783.1 CDS A1G_03790 NC_009882.1 652833 655895 D COG0460 Homoserine dehydrogenase; cell surface antigen 652833..655895 Rickettsia rickettsii str. 'Sheila Smith' 5647688 YP_001494784.1 CDS A1G_03795 NC_009882.1 656014 656391 R COG1396 Predicted transcriptional regulators; hypothetical protein complement(656014..656391) Rickettsia rickettsii str. 'Sheila Smith' 5647689 YP_001494785.1 CDS A1G_03800 NC_009882.1 656909 657736 D COG1295 Predicted membrane protein; hypothetical protein 656909..657736 Rickettsia rickettsii str. 'Sheila Smith' 5647690 YP_001494786.1 CDS A1G_03805 NC_009882.1 657886 658719 R COG0174 Glutamine synthetase; hypothetical protein complement(657886..658719) Rickettsia rickettsii str. 'Sheila Smith' 5647691 YP_001494787.1 CDS A1G_03810 NC_009882.1 658718 659440 D COG1496 Uncharacterized conserved protein; hypothetical protein 658718..659440 Rickettsia rickettsii str. 'Sheila Smith' 5647692 YP_001494788.1 CDS A1G_03815 NC_009882.1 659733 660017 D COG0242 N-formylmethionyl-tRNA deformylase; polypeptide deformylase 659733..660017 Rickettsia rickettsii str. 'Sheila Smith' 5647693 YP_001494789.1 CDS A1G_03820 NC_009882.1 660375 660689 D hypothetical protein 660375..660689 Rickettsia rickettsii str. 'Sheila Smith' 5647694 YP_001494790.1 CDS A1G_03825 NC_009882.1 660779 661474 R COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; hypothetical protein complement(660779..661474) Rickettsia rickettsii str. 'Sheila Smith' 5647695 YP_001494791.1 CDS A1G_03830 NC_009882.1 661710 663389 R hypothetical protein complement(661710..663389) Rickettsia rickettsii str. 'Sheila Smith' 5648213 YP_001494792.1 CDS A1G_03835 NC_009882.1 663418 663543 D pyruvate phosphate dikinase 663418..663543 Rickettsia rickettsii str. 'Sheila Smith' 5648214 YP_001494793.1 CDS A1G_03840 NC_009882.1 663781 666417 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(663781..666417) Rickettsia rickettsii str. 'Sheila Smith' 5648215 YP_001494794.1 CDS A1G_03845 NC_009882.1 667347 668015 D COG0625 Glutathione S-transferase; hypothetical protein 667347..668015 Rickettsia rickettsii str. 'Sheila Smith' 5648216 YP_001494795.1 CDS A1G_03850 NC_009882.1 668127 668879 R COG4285 Uncharacterized conserved protein; hypothetical protein complement(668127..668879) Rickettsia rickettsii str. 'Sheila Smith' 5648217 YP_001494796.1 CDS A1G_03855 NC_009882.1 668912 669154 R hypothetical protein complement(668912..669154) Rickettsia rickettsii str. 'Sheila Smith' 5648218 YP_001494797.1 CDS A1G_03860 NC_009882.1 669180 669497 D COG1268 Uncharacterized conserved protein; hypothetical protein 669180..669497 Rickettsia rickettsii str. 'Sheila Smith' 5648219 YP_001494798.1 CDS A1G_03865 NC_009882.1 669695 670993 D COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase 669695..670993 Rickettsia rickettsii str. 'Sheila Smith' 5648220 YP_001494799.1 CDS A1G_03870 NC_009882.1 671166 671795 D COG0605 Superoxide dismutase; superoxide dismutase 671166..671795 Rickettsia rickettsii str. 'Sheila Smith' 5648221 YP_001494800.1 CDS A1G_03875 NC_009882.1 671800 671961 D hypothetical protein 671800..671961 Rickettsia rickettsii str. 'Sheila Smith' 5648222 YP_001494801.1 CDS A1G_03895 NC_009882.1 673705 674505 D COG0340 Biotin-(acetyl-CoA carboxylase) ligase; biotin--protein ligase 673705..674505 Rickettsia rickettsii str. 'Sheila Smith' 5648223 YP_001494802.1 CDS A1G_03900 NC_009882.1 674573 674761 D hypothetical protein 674573..674761 Rickettsia rickettsii str. 'Sheila Smith' 5647578 YP_001494803.1 CDS A1G_03905 NC_009882.1 674979 675467 D COG5448 Uncharacterized conserved protein; hypothetical protein 674979..675467 Rickettsia rickettsii str. 'Sheila Smith' 5647579 YP_001494804.1 CDS A1G_03910 NC_009882.1 675464 675733 D hypothetical protein 675464..675733 Rickettsia rickettsii str. 'Sheila Smith' 5647580 YP_001494805.1 CDS A1G_03915 NC_009882.1 675762 675932 D COG5449 Uncharacterized conserved protein; hypothetical protein 675762..675932 Rickettsia rickettsii str. 'Sheila Smith' 5647581 YP_001494806.1 CDS A1G_03920 NC_009882.1 675936 676109 D hypothetical protein 675936..676109 Rickettsia rickettsii str. 'Sheila Smith' 5647582 YP_001494807.1 CDS A1G_03925 NC_009882.1 676096 676425 D COG5346 Predicted membrane protein; hypothetical protein 676096..676425 Rickettsia rickettsii str. 'Sheila Smith' 5647583 YP_001494808.1 CDS infC NC_009882.1 676576 677049 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 676576..677049 Rickettsia rickettsii str. 'Sheila Smith' 5647584 YP_001494809.1 CDS A1G_03935 NC_009882.1 677195 678433 D COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; branched-chain alpha-keto acid dehydrogenase subunit E2 677195..678433 Rickettsia rickettsii str. 'Sheila Smith' 5647585 YP_001494810.1 CDS prfA NC_009882.1 678566 679633 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 678566..679633 Rickettsia rickettsii str. 'Sheila Smith' 5647586 YP_001494811.1 CDS A1G_03945 NC_009882.1 679794 681557 D COG0608 Single-stranded DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ 679794..681557 Rickettsia rickettsii str. 'Sheila Smith' 5647587 YP_001494812.1 CDS A1G_03950 NC_009882.1 681601 682923 D COG0500 SAM-dependent methyltransferases; hypothetical protein 681601..682923 Rickettsia rickettsii str. 'Sheila Smith' 5647588 YP_001494813.1 CDS rho NC_009882.1 683305 684681 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 683305..684681 Rickettsia rickettsii str. 'Sheila Smith' 5648566 YP_001494814.1 CDS A1G_03960 NC_009882.1 684807 685721 D COG0616 Periplasmic serine proteases (ClpP class); protease IV 684807..685721 Rickettsia rickettsii str. 'Sheila Smith' 5648567 YP_001494815.1 CDS A1G_03965 NC_009882.1 685724 685966 D COG0776 Bacterial nucleoid DNA-binding protein; integration host factor beta-subunit 685724..685966 Rickettsia rickettsii str. 'Sheila Smith' 5648568 YP_001494816.1 CDS A1G_03970 NC_009882.1 685973 686173 D hypothetical protein 685973..686173 Rickettsia rickettsii str. 'Sheila Smith' 5648569 YP_001494817.1 CDS A1G_03975 NC_009882.1 686241 686363 D hypothetical protein 686241..686363 Rickettsia rickettsii str. 'Sheila Smith' 5648570 YP_001494818.1 CDS A1G_03980 NC_009882.1 686536 686727 D hypothetical protein 686536..686727 Rickettsia rickettsii str. 'Sheila Smith' 5648571 YP_001494819.1 CDS A1G_03985 NC_009882.1 686730 687476 D COG3022 Uncharacterized protein conserved in bacteria; hypothetical protein 686730..687476 Rickettsia rickettsii str. 'Sheila Smith' 5648572 YP_001494820.1 CDS A1G_03990 NC_009882.1 687560 687772 R hypothetical protein complement(687560..687772) Rickettsia rickettsii str. 'Sheila Smith' 5648573 YP_001494821.1 CDS A1G_03995 NC_009882.1 687753 688088 R hypothetical protein complement(687753..688088) Rickettsia rickettsii str. 'Sheila Smith' 5648574 YP_001494822.1 CDS A1G_04000 NC_009882.1 688131 688310 R hypothetical protein complement(688131..688310) Rickettsia rickettsii str. 'Sheila Smith' 5648575 YP_001494823.1 CDS A1G_04005 NC_009882.1 688252 688386 R hypothetical protein complement(688252..688386) Rickettsia rickettsii str. 'Sheila Smith' 5648576 YP_001494824.1 CDS A1G_04010 NC_009882.1 688364 688612 D COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 688364..688612 Rickettsia rickettsii str. 'Sheila Smith' 5648285 YP_001494825.1 CDS A1G_04015 NC_009882.1 688815 689138 D hypothetical protein 688815..689138 Rickettsia rickettsii str. 'Sheila Smith' 5648286 YP_001494826.1 CDS A1G_04020 NC_009882.1 689290 690282 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(689290..690282) Rickettsia rickettsii str. 'Sheila Smith' 5648288 YP_001494827.1 CDS A1G_04025 NC_009882.1 690510 691085 D COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 690510..691085 Rickettsia rickettsii str. 'Sheila Smith' 5648289 YP_001494828.1 CDS A1G_04030 NC_009882.1 691150 691590 D COG5622 Protein required for attachment to host cells; hypothetical protein 691150..691590 Rickettsia rickettsii str. 'Sheila Smith' 5648290 YP_001494829.1 CDS A1G_04035 NC_009882.1 691797 691928 R hypothetical protein complement(691797..691928) Rickettsia rickettsii str. 'Sheila Smith' 5648291 YP_001494830.1 CDS A1G_04040 NC_009882.1 692307 693026 D COG2945 Predicted hydrolase of the alpha/beta superfamily; hypothetical protein 692307..693026 Rickettsia rickettsii str. 'Sheila Smith' 5648292 YP_001494831.1 CDS A1G_04045 NC_009882.1 693256 694260 R COG2956 Predicted N-acetylglucosaminyl transferase; hypothetical protein complement(693256..694260) Rickettsia rickettsii str. 'Sheila Smith' 5648293 YP_001494832.1 CDS A1G_04050 NC_009882.1 694253 695008 R hypothetical protein complement(694253..695008) Rickettsia rickettsii str. 'Sheila Smith' 5648294 YP_001494833.1 CDS A1G_04055 NC_009882.1 694992 695666 R hypothetical protein complement(694992..695666) Rickettsia rickettsii str. 'Sheila Smith' 5648130 YP_001494834.1 CDS A1G_04060 NC_009882.1 695644 696285 R COG1279 Lysine efflux permease; hypothetical protein complement(695644..696285) Rickettsia rickettsii str. 'Sheila Smith' 5648131 YP_001494835.1 CDS A1G_04065 NC_009882.1 696286 696408 R hypothetical protein complement(696286..696408) Rickettsia rickettsii str. 'Sheila Smith' 5648132 YP_001494836.1 CDS A1G_04070 NC_009882.1 696873 698126 R COG0477 Permeases of the major facilitator superfamily; AmpG protein complement(696873..698126) Rickettsia rickettsii str. 'Sheila Smith' 5648133 YP_001494837.1 CDS A1G_04075 NC_009882.1 698370 698615 R transposase complement(698370..698615) Rickettsia rickettsii str. 'Sheila Smith' 5648134 YP_001494838.1 CDS A1G_04080 NC_009882.1 698612 698749 R transposase complement(698612..698749) Rickettsia rickettsii str. 'Sheila Smith' 5648135 YP_001494839.1 CDS A1G_04085 NC_009882.1 698884 699036 D lipopolysaccharide 1,2-glucosyltransferase RfaJ 698884..699036 Rickettsia rickettsii str. 'Sheila Smith' 5648136 YP_001494840.1 CDS A1G_04090 NC_009882.1 699319 700824 D COG3202 ATP/ADP translocase; ADP,ATP carrier protein 699319..700824 Rickettsia rickettsii str. 'Sheila Smith' 5648137 YP_001494841.1 CDS A1G_04095 NC_009882.1 701074 702654 D hypothetical protein 701074..702654 Rickettsia rickettsii str. 'Sheila Smith' 5648138 YP_001494842.1 CDS A1G_04100 NC_009882.1 702641 703708 D COG0142 Geranylgeranyl pyrophosphate synthase; octaprenyl-diphosphate synthase 702641..703708 Rickettsia rickettsii str. 'Sheila Smith' 5648139 YP_001494843.1 CDS A1G_04105 NC_009882.1 704112 705950 R COG0006 Xaa-Pro aminopeptidase; hypothetical protein complement(704112..705950) Rickettsia rickettsii str. 'Sheila Smith' 5648434 YP_001494844.1 CDS A1G_04110 NC_009882.1 706092 707375 R COG0531 Amino acid transporters; putrescine-ornithine antiporter complement(706092..707375) Rickettsia rickettsii str. 'Sheila Smith' 5648435 YP_001494845.1 CDS A1G_04115 NC_009882.1 708397 708729 R COG0316 Uncharacterized conserved protein; Iron-sulfur cluster assembly accessory protein complement(708397..708729) Rickettsia rickettsii str. 'Sheila Smith' 5648436 YP_001494846.1 CDS A1G_04120 NC_009882.1 708733 709128 R COG0822 NifU homolog involved in Fe-S cluster formation; scaffold protein complement(708733..709128) Rickettsia rickettsii str. 'Sheila Smith' 5648437 YP_001494847.1 CDS A1G_04125 NC_009882.1 709280 710512 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(709280..710512) Rickettsia rickettsii str. 'Sheila Smith' 5648438 YP_001494848.1 CDS A1G_04130 NC_009882.1 710615 711733 R COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; hypothetical protein complement(710615..711733) Rickettsia rickettsii str. 'Sheila Smith' 5648439 YP_001494849.1 CDS A1G_04135 NC_009882.1 711730 712149 R COG1959 Predicted transcriptional regulator; hypothetical protein complement(711730..712149) Rickettsia rickettsii str. 'Sheila Smith' 5647707 YP_001494850.1 CDS A1G_04140 NC_009882.1 712607 712771 R hypothetical protein complement(712607..712771) Rickettsia rickettsii str. 'Sheila Smith' 5647708 YP_001494851.1 CDS A1G_04155 NC_009882.1 714178 715050 R hypothetical protein complement(714178..715050) Rickettsia rickettsii str. 'Sheila Smith' 5647709 YP_001494852.1 CDS A1G_04160 NC_009882.1 715062 715217 R hypothetical protein complement(715062..715217) Rickettsia rickettsii str. 'Sheila Smith' 5647710 YP_001494853.1 CDS A1G_04165 NC_009882.1 715344 715502 R transposase complement(715344..715502) Rickettsia rickettsii str. 'Sheila Smith' 5647711 YP_001494854.1 CDS A1G_04170 NC_009882.1 715675 715911 D hypothetical protein 715675..715911 Rickettsia rickettsii str. 'Sheila Smith' 5647712 YP_001494855.1 CDS A1G_04175 NC_009882.1 716257 716589 D COG4804 Uncharacterized conserved protein; hypothetical protein 716257..716589 Rickettsia rickettsii str. 'Sheila Smith' 5647713 YP_001494856.1 CDS A1G_04180 NC_009882.1 716784 717233 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 716784..717233 Rickettsia rickettsii str. 'Sheila Smith' 5647714 YP_001494857.1 CDS A1G_04195 NC_009882.1 717789 718817 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(717789..718817) Rickettsia rickettsii str. 'Sheila Smith' 5647715 YP_001494858.1 CDS clpP NC_009882.1 719856 720461 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(719856..720461) Rickettsia rickettsii str. 'Sheila Smith' 5647884 YP_001494859.1 CDS cmk NC_009882.1 722595 723254 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(722595..723254) Rickettsia rickettsii str. 'Sheila Smith' 5647885 YP_001494860.1 CDS A1G_04220 NC_009882.1 723376 723654 R COG1396 Predicted transcriptional regulators; hypothetical protein complement(723376..723654) Rickettsia rickettsii str. 'Sheila Smith' 5647886 YP_001494861.1 CDS A1G_04230 NC_009882.1 724653 724874 D hypothetical protein 724653..724874 Rickettsia rickettsii str. 'Sheila Smith' 5647888 YP_001494862.1 CDS A1G_04240 NC_009882.1 725987 726589 D hypothetical protein 725987..726589 Rickettsia rickettsii str. 'Sheila Smith' 5647889 YP_001494863.1 CDS A1G_04245 NC_009882.1 726719 726973 D hypothetical protein 726719..726973 Rickettsia rickettsii str. 'Sheila Smith' 5647890 YP_001494864.1 CDS A1G_04250 NC_009882.1 726966 727136 D hypothetical protein 726966..727136 Rickettsia rickettsii str. 'Sheila Smith' 5647891 YP_001494865.1 CDS A1G_04255 NC_009882.1 727037 727231 R hypothetical protein complement(727037..727231) Rickettsia rickettsii str. 'Sheila Smith' 5647892 YP_001494866.1 CDS A1G_04260 NC_009882.1 727242 727442 R COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein complement(727242..727442) Rickettsia rickettsii str. 'Sheila Smith' 5648629 YP_001494867.1 CDS A1G_04265 NC_009882.1 727544 727681 R hypothetical protein complement(727544..727681) Rickettsia rickettsii str. 'Sheila Smith' 5648630 YP_001494868.1 CDS A1G_04270 NC_009882.1 727639 727818 R hypothetical protein complement(727639..727818) Rickettsia rickettsii str. 'Sheila Smith' 5648631 YP_001494869.1 CDS hemC NC_009882.1 728207 729262 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(728207..729262) Rickettsia rickettsii str. 'Sheila Smith' 5648632 YP_001494870.1 CDS A1G_04280 NC_009882.1 729259 730245 R COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF; hypothetical protein complement(729259..730245) Rickettsia rickettsii str. 'Sheila Smith' 5648633 YP_001494871.1 CDS A1G_04285 NC_009882.1 730501 730629 R COG0642 Signal transduction histidine kinase; Na+/proline symporter and signal transduction histidine kinase complement(730501..730629) Rickettsia rickettsii str. 'Sheila Smith' 5648634 YP_001494872.1 CDS A1G_04290 NC_009882.1 730683 731081 R COG0642 Signal transduction histidine kinase; two-component sensor histidine kinase complement(730683..731081) Rickettsia rickettsii str. 'Sheila Smith' 5648635 YP_001494873.1 CDS A1G_04305 NC_009882.1 733087 733692 R COG0666 FOG: Ankyrin repeat; hypothetical protein complement(733087..733692) Rickettsia rickettsii str. 'Sheila Smith' 5648636 YP_001494874.1 CDS A1G_04310 NC_009882.1 733710 734048 R hypothetical protein complement(733710..734048) Rickettsia rickettsii str. 'Sheila Smith' 5648637 YP_001494875.1 CDS A1G_04315 NC_009882.1 734371 735378 R COG0354 Predicted aminomethyltransferase related to GcvT; hypothetical protein complement(734371..735378) Rickettsia rickettsii str. 'Sheila Smith' 5648638 YP_001494876.1 CDS A1G_04320 NC_009882.1 735491 736282 D COG1723 Uncharacterized conserved protein; hypothetical protein 735491..736282 Rickettsia rickettsii str. 'Sheila Smith' 5648639 YP_001494877.1 CDS A1G_04325 NC_009882.1 736292 737137 D COG0349 Ribonuclease D; ribonuclease D 736292..737137 Rickettsia rickettsii str. 'Sheila Smith' 5648440 YP_001494878.1 CDS A1G_04330 NC_009882.1 737266 737403 R hypothetical protein complement(737266..737403) Rickettsia rickettsii str. 'Sheila Smith' 5648441 YP_001494879.1 CDS A1G_04335 NC_009882.1 737500 738021 R COG0212 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein complement(737500..738021) Rickettsia rickettsii str. 'Sheila Smith' 5648442 YP_001494880.1 CDS A1G_04340 NC_009882.1 738313 739692 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(738313..739692) Rickettsia rickettsii str. 'Sheila Smith' 5648443 YP_001494881.1 CDS A1G_04345 NC_009882.1 739845 740525 R COG0500 SAM-dependent methyltransferases; biotin synthesis protein BioC complement(739845..740525) Rickettsia rickettsii str. 'Sheila Smith' 5648444 YP_001494882.1 CDS A1G_04350 NC_009882.1 740596 741051 R hypothetical protein complement(740596..741051) Rickettsia rickettsii str. 'Sheila Smith' 5648445 YP_001494883.1 CDS A1G_04355 NC_009882.1 741148 741372 R COG0338 Site-specific DNA methylase; hypothetical protein complement(741148..741372) Rickettsia rickettsii str. 'Sheila Smith' 5648446 YP_001494884.1 CDS A1G_04360 NC_009882.1 741700 741918 R hypothetical protein complement(741700..741918) Rickettsia rickettsii str. 'Sheila Smith' 5648447 YP_001494885.1 CDS A1G_04365 NC_009882.1 742042 742599 R putative transposable insertion element complement(742042..742599) Rickettsia rickettsii str. 'Sheila Smith' 5648448 YP_001494886.1 CDS A1G_04370 NC_009882.1 742906 743391 R hypothetical protein complement(742906..743391) Rickettsia rickettsii str. 'Sheila Smith' 5648449 YP_001494887.1 CDS A1G_04375 NC_009882.1 743396 744085 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); hypothetical protein complement(743396..744085) Rickettsia rickettsii str. 'Sheila Smith' 5648450 YP_001494888.1 CDS A1G_04380 NC_009882.1 744340 744717 R hypothetical protein complement(744340..744717) Rickettsia rickettsii str. 'Sheila Smith' 5647492 YP_001494889.1 CDS A1G_04385 NC_009882.1 744808 745002 R hypothetical protein complement(744808..745002) Rickettsia rickettsii str. 'Sheila Smith' 5647493 YP_001494890.1 CDS A1G_04390 NC_009882.1 745248 745430 R hypothetical protein complement(745248..745430) Rickettsia rickettsii str. 'Sheila Smith' 5647494 YP_001494891.1 CDS rpmJ NC_009882.1 745740 745865 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 745740..745865 Rickettsia rickettsii str. 'Sheila Smith' 5647495 YP_001494892.1 CDS A1G_04400 NC_009882.1 746072 746833 D COG0217 Uncharacterized conserved protein; hypothetical protein 746072..746833 Rickettsia rickettsii str. 'Sheila Smith' 5647496 YP_001494893.1 CDS A1G_04405 NC_009882.1 746830 747576 D COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); UDP-N-acetylglucosamine pyrophosphorylase 746830..747576 Rickettsia rickettsii str. 'Sheila Smith' 5647497 YP_001494894.1 CDS A1G_04410 NC_009882.1 748155 748277 R hypothetical protein complement(748155..748277) Rickettsia rickettsii str. 'Sheila Smith' 5647499 YP_001494895.1 CDS A1G_04415 NC_009882.1 748972 749241 D hypothetical protein 748972..749241 Rickettsia rickettsii str. 'Sheila Smith' 5647500 YP_001494896.1 CDS A1G_04420 NC_009882.1 750129 750371 R hypothetical protein complement(750129..750371) Rickettsia rickettsii str. 'Sheila Smith' 5647501 YP_001494897.1 CDS A1G_04425 NC_009882.1 750434 750742 R COG1694 Predicted pyrophosphatase; hypothetical protein complement(750434..750742) Rickettsia rickettsii str. 'Sheila Smith' 5647943 YP_001494898.1 CDS A1G_04430 NC_009882.1 750872 751162 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein complement(750872..751162) Rickettsia rickettsii str. 'Sheila Smith' 5647944 YP_001494899.1 CDS A1G_04435 NC_009882.1 751228 751392 D hypothetical protein 751228..751392 Rickettsia rickettsii str. 'Sheila Smith' 5647945 YP_001494900.1 CDS A1G_04440 NC_009882.1 751482 751889 D COG0466 ATP-dependent Lon protease, bacterial type; hypothetical protein 751482..751889 Rickettsia rickettsii str. 'Sheila Smith' 5647946 YP_001494901.1 CDS A1G_04445 NC_009882.1 752147 752299 D hypothetical protein 752147..752299 Rickettsia rickettsii str. 'Sheila Smith' 5647947 YP_001494902.1 CDS A1G_04450 NC_009882.1 752353 752586 D hypothetical protein 752353..752586 Rickettsia rickettsii str. 'Sheila Smith' 5647948 YP_001494903.1 CDS A1G_04465 NC_009882.1 753573 753704 R NTPase complement(753573..753704) Rickettsia rickettsii str. 'Sheila Smith' 5647949 YP_001494904.1 CDS A1G_04470 NC_009882.1 754414 754530 D NADH dehydrogenase subunit N 754414..754530 Rickettsia rickettsii str. 'Sheila Smith' 5647950 YP_001494905.1 CDS A1G_04475 NC_009882.1 754527 754643 R hypothetical protein complement(754527..754643) Rickettsia rickettsii str. 'Sheila Smith' 5647951 YP_001494906.1 CDS A1G_04480 NC_009882.1 755131 756507 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 755131..756507 Rickettsia rickettsii str. 'Sheila Smith' 5647952 YP_001494907.1 CDS A1G_04485 NC_009882.1 756494 758035 R hypothetical protein complement(756494..758035) Rickettsia rickettsii str. 'Sheila Smith' 5647953 YP_001494908.1 CDS A1G_04490 NC_009882.1 758100 759116 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(758100..759116) Rickettsia rickettsii str. 'Sheila Smith' 5647452 YP_001494909.1 CDS A1G_04495 NC_009882.1 759283 759360 D hypothetical protein 759283..759360 Rickettsia rickettsii str. 'Sheila Smith' 5647453 YP_001494910.1 CDS A1G_04500 NC_009882.1 759365 759589 R hypothetical protein complement(759365..759589) Rickettsia rickettsii str. 'Sheila Smith' 5647454 YP_001494911.1 CDS A1G_04505 NC_009882.1 759944 760222 D hypothetical protein 759944..760222 Rickettsia rickettsii str. 'Sheila Smith' 5647455 YP_001494912.1 CDS A1G_04510 NC_009882.1 760308 762254 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(760308..762254) Rickettsia rickettsii str. 'Sheila Smith' 5647456 YP_001494913.1 CDS A1G_04515 NC_009882.1 762318 762893 D COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; aromatic acid decarboxylase 762318..762893 Rickettsia rickettsii str. 'Sheila Smith' 5647457 YP_001494914.1 CDS A1G_04520 NC_009882.1 762985 763290 R hypothetical protein complement(762985..763290) Rickettsia rickettsii str. 'Sheila Smith' 5647458 YP_001494915.1 CDS A1G_04525 NC_009882.1 763260 764744 D unwinds double stranded DNA; replicative DNA helicase 763260..764744 Rickettsia rickettsii str. 'Sheila Smith' 5647459 YP_001494916.1 CDS A1G_04530 NC_009882.1 764904 765113 R hypothetical protein complement(764904..765113) Rickettsia rickettsii str. 'Sheila Smith' 5647460 YP_001494917.1 CDS A1G_04545 NC_009882.1 766113 766217 R COG0814 Amino acid permeases; hypothetical protein complement(766113..766217) Rickettsia rickettsii str. 'Sheila Smith' 5647461 YP_001494918.1 CDS A1G_04550 NC_009882.1 766607 767299 D COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase B 766607..767299 Rickettsia rickettsii str. 'Sheila Smith' 5648462 YP_001494919.1 CDS A1G_04555 NC_009882.1 767346 770225 D COG1357 Uncharacterized low-complexity proteins; hypothetical protein 767346..770225 Rickettsia rickettsii str. 'Sheila Smith' 5648463 YP_001494920.1 CDS A1G_04560 NC_009882.1 770230 770967 D COG0742 N6-adenine-specific methylase; hypothetical protein 770230..770967 Rickettsia rickettsii str. 'Sheila Smith' 5648464 YP_001494921.1 CDS A1G_04565 NC_009882.1 771113 772447 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 771113..772447 Rickettsia rickettsii str. 'Sheila Smith' 5648465 YP_001494922.1 CDS A1G_04570 NC_009882.1 772444 772758 D COG0191 Fructose/tagatose bisphosphate aldolase; hypothetical protein 772444..772758 Rickettsia rickettsii str. 'Sheila Smith' 5648466 YP_001494923.1 CDS recO NC_009882.1 772880 773593 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 772880..773593 Rickettsia rickettsii str. 'Sheila Smith' 5648467 YP_001494924.1 CDS A1G_04580 NC_009882.1 773745 773894 D hypothetical protein 773745..773894 Rickettsia rickettsii str. 'Sheila Smith' 5648468 YP_001494925.1 CDS A1G_04585 NC_009882.1 774111 774803 D COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein 774111..774803 Rickettsia rickettsii str. 'Sheila Smith' 5648469 YP_001494926.1 CDS A1G_04590 NC_009882.1 774860 776122 R hypothetical protein complement(774860..776122) Rickettsia rickettsii str. 'Sheila Smith' 5648470 YP_001494927.1 CDS infB NC_009882.1 776495 778990 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(776495..778990) Rickettsia rickettsii str. 'Sheila Smith' 5648471 YP_001494928.1 CDS nusA NC_009882.1 779229 780740 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(779229..780740) Rickettsia rickettsii str. 'Sheila Smith' 5648472 YP_001494929.1 CDS A1G_04605 NC_009882.1 780751 781236 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(780751..781236) Rickettsia rickettsii str. 'Sheila Smith' 5647534 YP_001494930.1 CDS A1G_04610 NC_009882.1 781410 781766 R hypothetical protein complement(781410..781766) Rickettsia rickettsii str. 'Sheila Smith' 5647535 YP_001494931.1 CDS A1G_04615 NC_009882.1 782288 782686 R hypothetical protein complement(782288..782686) Rickettsia rickettsii str. 'Sheila Smith' 5647536 YP_001494932.1 CDS A1G_04620 NC_009882.1 782754 783182 D COG1959 Predicted transcriptional regulator; hypothetical protein 782754..783182 Rickettsia rickettsii str. 'Sheila Smith' 5647537 YP_001494933.1 CDS A1G_04625 NC_009882.1 783177 783932 R COG1189 Predicted rRNA methylase; hemolysin complement(783177..783932) Rickettsia rickettsii str. 'Sheila Smith' 5647538 YP_001494934.1 CDS A1G_04630 NC_009882.1 784091 785326 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(784091..785326) Rickettsia rickettsii str. 'Sheila Smith' 5647539 YP_001494935.1 CDS A1G_04635 NC_009882.1 785330 785572 R hypothetical protein complement(785330..785572) Rickettsia rickettsii str. 'Sheila Smith' 5647540 YP_001494936.1 CDS A1G_04640 NC_009882.1 785619 785870 R COG5304 Uncharacterized protein conserved in bacteria; hypothetical protein complement(785619..785870) Rickettsia rickettsii str. 'Sheila Smith' 5647541 YP_001494937.1 CDS A1G_04645 NC_009882.1 785938 786195 D hypothetical protein 785938..786195 Rickettsia rickettsii str. 'Sheila Smith' 5647542 YP_001494938.1 CDS A1G_04650 NC_009882.1 786362 786574 R hypothetical protein complement(786362..786574) Rickettsia rickettsii str. 'Sheila Smith' 5647543 YP_001494939.1 CDS A1G_04655 NC_009882.1 787589 787804 D COG3547 Transposase and inactivated derivatives; hypothetical protein 787589..787804 Rickettsia rickettsii str. 'Sheila Smith' 5648080 YP_001494940.1 CDS A1G_04660 NC_009882.1 788010 788489 R COG0522 Ribosomal protein S4 and related proteins; hypothetical protein complement(788010..788489) Rickettsia rickettsii str. 'Sheila Smith' 5648081 YP_001494941.1 CDS A1G_04665 NC_009882.1 788694 789062 R hypothetical protein complement(788694..789062) Rickettsia rickettsii str. 'Sheila Smith' 5648082 YP_001494942.1 CDS A1G_04670 NC_009882.1 789109 789321 R hypothetical protein complement(789109..789321) Rickettsia rickettsii str. 'Sheila Smith' 5648083 YP_001494943.1 CDS A1G_04675 NC_009882.1 789605 789805 R hypothetical protein complement(789605..789805) Rickettsia rickettsii str. 'Sheila Smith' 5648084 YP_001494944.1 CDS A1G_04680 NC_009882.1 789804 790016 D COG2271 Sugar phosphate permease; hypothetical protein 789804..790016 Rickettsia rickettsii str. 'Sheila Smith' 5648085 YP_001494945.1 CDS A1G_04685 NC_009882.1 790042 790344 R hypothetical protein complement(790042..790344) Rickettsia rickettsii str. 'Sheila Smith' 5648086 YP_001494946.1 CDS A1G_04690 NC_009882.1 790365 790607 R hypothetical protein complement(790365..790607) Rickettsia rickettsii str. 'Sheila Smith' 5648087 YP_001494947.1 CDS A1G_04695 NC_009882.1 790606 790680 D hypothetical protein 790606..790680 Rickettsia rickettsii str. 'Sheila Smith' 5648088 YP_001494948.1 CDS A1G_04700 NC_009882.1 790797 791063 R hypothetical protein complement(790797..791063) Rickettsia rickettsii str. 'Sheila Smith' 5648089 YP_001494949.1 CDS A1G_04705 NC_009882.1 791241 792527 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(791241..792527) Rickettsia rickettsii str. 'Sheila Smith' 5648410 YP_001494950.1 CDS A1G_04710 NC_009882.1 792508 792774 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F complement(792508..792774) Rickettsia rickettsii str. 'Sheila Smith' 5648411 YP_001494951.1 CDS A1G_04715 NC_009882.1 793311 794735 D COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; nitrogen assimilation regulatory protein ntrX 793311..794735 Rickettsia rickettsii str. 'Sheila Smith' 5648412 YP_001494952.1 CDS A1G_04720 NC_009882.1 794728 796473 D COG1357 Uncharacterized low-complexity proteins; hypothetical protein 794728..796473 Rickettsia rickettsii str. 'Sheila Smith' 5648413 YP_001494953.1 CDS A1G_04725 NC_009882.1 796695 797654 R hypothetical protein complement(796695..797654) Rickettsia rickettsii str. 'Sheila Smith' 5648414 YP_001494954.1 CDS A1G_04730 NC_009882.1 798333 800114 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein complement(798333..800114) Rickettsia rickettsii str. 'Sheila Smith' 5648415 YP_001494955.1 CDS A1G_04735 NC_009882.1 800104 800625 R hypothetical protein complement(800104..800625) Rickettsia rickettsii str. 'Sheila Smith' 5648416 YP_001494956.1 CDS A1G_04740 NC_009882.1 800875 801009 R hypothetical protein complement(800875..801009) Rickettsia rickettsii str. 'Sheila Smith' 5648417 YP_001494957.1 CDS A1G_04745 NC_009882.1 801240 802925 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein complement(801240..802925) Rickettsia rickettsii str. 'Sheila Smith' 5648418 YP_001494958.1 CDS A1G_04750 NC_009882.1 803269 803667 R cell division protein FtsL complement(803269..803667) Rickettsia rickettsii str. 'Sheila Smith' 5648419 YP_001494959.1 CDS mraW NC_009882.1 803674 804573 R COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW complement(803674..804573) Rickettsia rickettsii str. 'Sheila Smith' 5648420 YP_001494960.1 CDS A1G_04760 NC_009882.1 804597 805046 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(804597..805046) Rickettsia rickettsii str. 'Sheila Smith' 5647832 YP_001494962.1 CDS A1G_04770 NC_009882.1 805983 807380 D COG0591 Na+/proline symporter; sodium/pantothenate symporter 805983..807380 Rickettsia rickettsii str. 'Sheila Smith' 5647834 YP_001494963.1 CDS A1G_04775 NC_009882.1 807614 807820 D hypothetical protein 807614..807820 Rickettsia rickettsii str. 'Sheila Smith' 5647835 YP_001494964.1 CDS uvrC NC_009882.1 808009 809928 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(808009..809928) Rickettsia rickettsii str. 'Sheila Smith' 5647836 YP_001494965.1 CDS A1G_04785 NC_009882.1 810092 810619 R COG2847 Uncharacterized protein conserved in bacteria; hypothetical protein complement(810092..810619) Rickettsia rickettsii str. 'Sheila Smith' 5647837 YP_001494966.1 CDS A1G_04790 NC_009882.1 810673 811194 R COG4912 Predicted DNA alkylation repair enzyme; hypothetical protein complement(810673..811194) Rickettsia rickettsii str. 'Sheila Smith' 5647838 YP_001494967.1 CDS A1G_04795 NC_009882.1 811431 811589 R COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(811431..811589) Rickettsia rickettsii str. 'Sheila Smith' 5647839 YP_001494968.1 CDS A1G_04800 NC_009882.1 811673 811798 R hypothetical protein complement(811673..811798) Rickettsia rickettsii str. 'Sheila Smith' 5647840 YP_001494969.1 CDS A1G_04805 NC_009882.1 811851 811979 R COG2169 Adenosine deaminase; methylated-DNA--protein-cysteine methyltransferase complement(811851..811979) Rickettsia rickettsii str. 'Sheila Smith' 5647841 YP_001494970.1 CDS A1G_04810 NC_009882.1 812132 812377 R COG2169 Adenosine deaminase; hypothetical protein complement(812132..812377) Rickettsia rickettsii str. 'Sheila Smith' 5647842 YP_001494971.1 CDS A1G_04815 NC_009882.1 812467 812973 R COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(812467..812973) Rickettsia rickettsii str. 'Sheila Smith' 5648306 YP_001494972.1 CDS A1G_04820 NC_009882.1 813069 813212 D hypothetical protein 813069..813212 Rickettsia rickettsii str. 'Sheila Smith' 5648307 YP_001494973.1 CDS A1G_04825 NC_009882.1 813263 813451 D hypothetical protein 813263..813451 Rickettsia rickettsii str. 'Sheila Smith' 5648308 YP_001494974.1 CDS A1G_04830 NC_009882.1 813587 813694 D hypothetical protein 813587..813694 Rickettsia rickettsii str. 'Sheila Smith' 5648309 YP_001494975.1 CDS A1G_04835 NC_009882.1 813740 813871 R Type I site-specific restriction-modification system, R (restriction) subunit complement(813740..813871) Rickettsia rickettsii str. 'Sheila Smith' 5648310 YP_001494976.1 CDS A1G_04840 NC_009882.1 814355 814522 R hypothetical protein complement(814355..814522) Rickettsia rickettsii str. 'Sheila Smith' 5648311 YP_001494977.1 CDS A1G_04845 NC_009882.1 815143 815352 R hypothetical protein complement(815143..815352) Rickettsia rickettsii str. 'Sheila Smith' 5648313 YP_001494978.1 CDS A1G_04850 NC_009882.1 815700 815948 R COG0666 FOG: Ankyrin repeat; ankyrin repeat-containing protein complement(815700..815948) Rickettsia rickettsii str. 'Sheila Smith' 5648314 YP_001494979.1 CDS A1G_04855 NC_009882.1 816968 819688 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(816968..819688) Rickettsia rickettsii str. 'Sheila Smith' 5648315 YP_001494980.1 CDS A1G_04860 NC_009882.1 819904 820752 D COG0760 Parvulin-like peptidyl-prolyl isomerase; protein export protein prsA 819904..820752 Rickettsia rickettsii str. 'Sheila Smith' 5648090 YP_001494981.1 CDS acpS NC_009882.1 820962 821357 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(820962..821357) Rickettsia rickettsii str. 'Sheila Smith' 5648091 YP_001494982.1 CDS rpoZ NC_009882.1 821358 821741 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(821358..821741) Rickettsia rickettsii str. 'Sheila Smith' 5648092 YP_001494983.1 CDS A1G_04875 NC_009882.1 821920 823179 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(821920..823179) Rickettsia rickettsii str. 'Sheila Smith' 5648093 YP_001494984.1 CDS gyrB NC_009882.1 823271 825694 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(823271..825694) Rickettsia rickettsii str. 'Sheila Smith' 5648094 YP_001494985.1 CDS A1G_04885 NC_009882.1 825800 826660 D COG0647 Predicted sugar phosphatases of the HAD superfamily; hypothetical protein 825800..826660 Rickettsia rickettsii str. 'Sheila Smith' 5648095 YP_001494986.1 CDS A1G_04890 NC_009882.1 827165 828535 D COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); magnesium transporter 827165..828535 Rickettsia rickettsii str. 'Sheila Smith' 5648097 YP_001494987.1 CDS A1G_04895 NC_009882.1 828546 828830 R hypothetical protein complement(828546..828830) Rickettsia rickettsii str. 'Sheila Smith' 5648098 YP_001494988.1 CDS A1G_04900 NC_009882.1 829268 829597 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 829268..829597 Rickettsia rickettsii str. 'Sheila Smith' 5648597 YP_001494989.1 CDS A1G_04915 NC_009882.1 830507 830629 R hypothetical protein complement(830507..830629) Rickettsia rickettsii str. 'Sheila Smith' 5648598 YP_001494990.1 CDS A1G_04920 NC_009882.1 830746 830976 D hypothetical protein 830746..830976 Rickettsia rickettsii str. 'Sheila Smith' 5648599 YP_001494991.1 CDS A1G_04925 NC_009882.1 831622 831852 R COG4710 Predicted DNA-binding protein with an HTH domain; antitoxin of toxin-antitoxin system complement(831622..831852) Rickettsia rickettsii str. 'Sheila Smith' 5648601 YP_001494992.1 CDS A1G_04930 NC_009882.1 832062 832241 D hypothetical protein 832062..832241 Rickettsia rickettsii str. 'Sheila Smith' 5648602 YP_001494993.1 CDS yajC NC_009882.1 832252 832677 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 832252..832677 Rickettsia rickettsii str. 'Sheila Smith' 5648603 YP_001494994.1 CDS secD NC_009882.1 832661 834217 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 832661..834217 Rickettsia rickettsii str. 'Sheila Smith' 5648604 YP_001494995.1 CDS A1G_04945 NC_009882.1 834462 835079 D COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems; sco2 protein 834462..835079 Rickettsia rickettsii str. 'Sheila Smith' 5648605 YP_001494996.1 CDS A1G_04950 NC_009882.1 835181 835567 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 835181..835567 Rickettsia rickettsii str. 'Sheila Smith' 5648606 YP_001494997.1 CDS A1G_04955 NC_009882.1 835693 836214 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 835693..836214 Rickettsia rickettsii str. 'Sheila Smith' 5648018 YP_001494998.1 CDS A1G_04960 NC_009882.1 836437 838092 D COG0728 Uncharacterized membrane protein, putative virulence factor; virulence factor mviN 836437..838092 Rickettsia rickettsii str. 'Sheila Smith' 5648019 YP_001494999.1 CDS A1G_04965 NC_009882.1 838073 838825 D hypothetical protein 838073..838825 Rickettsia rickettsii str. 'Sheila Smith' 5648020 YP_001495000.1 CDS A1G_04970 NC_009882.1 838905 839507 D hypothetical protein 838905..839507 Rickettsia rickettsii str. 'Sheila Smith' 5648021 YP_001495001.1 CDS A1G_04975 NC_009882.1 839715 841856 R COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG complement(839715..841856) Rickettsia rickettsii str. 'Sheila Smith' 5648022 YP_001495002.1 CDS A1G_04995 NC_009882.1 843432 844064 D COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; succinyl-CoA:3-ketoacid-coenzyme A transferase 843432..844064 Rickettsia rickettsii str. 'Sheila Smith' 5648023 YP_001495003.1 CDS A1G_05000 NC_009882.1 844068 844703 D COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 844068..844703 Rickettsia rickettsii str. 'Sheila Smith' 5648024 YP_001495004.1 CDS A1G_05005 NC_009882.1 844785 845000 D COG0655 Multimeric flavodoxin WrbA; tryptophan repressor binding protein 844785..845000 Rickettsia rickettsii str. 'Sheila Smith' 5648025 YP_001495005.1 CDS A1G_05010 NC_009882.1 845049 845264 D COG0655 Multimeric flavodoxin WrbA; tryptophan repressor binding protein 845049..845264 Rickettsia rickettsii str. 'Sheila Smith' 5648026 YP_001495006.1 CDS A1G_05015 NC_009882.1 845314 846798 R hypothetical protein complement(845314..846798) Rickettsia rickettsii str. 'Sheila Smith' 5648027 YP_001495007.1 CDS mraY NC_009882.1 845765 845917 D phospho-N-acetylmuramoyl-pentapeptide- transferase 845765..845917 Rickettsia rickettsii str. 'Sheila Smith' 5648028 YP_001495008.1 CDS mraY NC_009882.1 846917 848002 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(846917..848002) Rickettsia rickettsii str. 'Sheila Smith' 5647556 YP_001495009.1 CDS A1G_05030 NC_009882.1 848187 849536 R COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase complement(848187..849536) Rickettsia rickettsii str. 'Sheila Smith' 5647557 YP_001495010.1 CDS murE NC_009882.1 849744 851183 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(849744..851183) Rickettsia rickettsii str. 'Sheila Smith' 5647558 YP_001495011.1 CDS A1G_05040 NC_009882.1 851330 854698 R COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor complement(851330..854698) Rickettsia rickettsii str. 'Sheila Smith' 5647559 YP_001495012.1 CDS A1G_05045 NC_009882.1 854710 854973 R COG2938 Uncharacterized conserved protein; hypothetical protein complement(854710..854973) Rickettsia rickettsii str. 'Sheila Smith' 5647560 YP_001495013.1 CDS A1G_05050 NC_009882.1 855082 855504 D COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 855082..855504 Rickettsia rickettsii str. 'Sheila Smith' 5647561 YP_001495014.1 CDS dnaA NC_009882.1 855505 856896 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 855505..856896 Rickettsia rickettsii str. 'Sheila Smith' 5647562 YP_001495015.1 CDS A1G_05060 NC_009882.1 857674 857805 R hypothetical protein complement(857674..857805) Rickettsia rickettsii str. 'Sheila Smith' 5647563 YP_001495016.1 CDS A1G_05065 NC_009882.1 858145 858297 R hypothetical protein complement(858145..858297) Rickettsia rickettsii str. 'Sheila Smith' 5647564 YP_001495017.1 CDS A1G_05070 NC_009882.1 858671 858778 R hypothetical protein complement(858671..858778) Rickettsia rickettsii str. 'Sheila Smith' 5647565 YP_001495018.1 CDS A1G_05075 NC_009882.1 858893 859168 R hypothetical protein complement(858893..859168) Rickettsia rickettsii str. 'Sheila Smith' 5647566 YP_001495019.1 CDS A1G_05080 NC_009882.1 859197 859532 R hypothetical protein complement(859197..859532) Rickettsia rickettsii str. 'Sheila Smith' 5648368 YP_001495020.1 CDS A1G_05085 NC_009882.1 859725 861197 D COG3621 Patatin; patatin b1 859725..861197 Rickettsia rickettsii str. 'Sheila Smith' 5648369 YP_001495021.1 CDS A1G_05090 NC_009882.1 861944 862105 D hypothetical protein 861944..862105 Rickettsia rickettsii str. 'Sheila Smith' 5648370 YP_001495022.1 CDS A1G_05095 NC_009882.1 862325 862507 R COG0477 Permeases of the major facilitator superfamily; bicyclomycin resistance protein complement(862325..862507) Rickettsia rickettsii str. 'Sheila Smith' 5648371 YP_001495023.1 CDS A1G_05100 NC_009882.1 862536 862742 R nucleotidyltransferase/HEPN domain-containing protein complement(862536..862742) Rickettsia rickettsii str. 'Sheila Smith' 5648372 YP_001495024.1 CDS A1G_05105 NC_009882.1 862806 862967 R hypothetical protein complement(862806..862967) Rickettsia rickettsii str. 'Sheila Smith' 5648373 YP_001495025.1 CDS A1G_05110 NC_009882.1 863200 863343 R COG1708 Predicted nucleotidyltransferases; hypothetical protein complement(863200..863343) Rickettsia rickettsii str. 'Sheila Smith' 5648374 YP_001495026.1 CDS A1G_05115 NC_009882.1 863425 864522 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(863425..864522) Rickettsia rickettsii str. 'Sheila Smith' 5648375 YP_001495027.1 CDS A1G_05130 NC_009882.1 865151 865708 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(865151..865708) Rickettsia rickettsii str. 'Sheila Smith' 5648376 YP_001495028.1 CDS A1G_05135 NC_009882.1 866033 866644 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(866033..866644) Rickettsia rickettsii str. 'Sheila Smith' 5648377 YP_001495029.1 CDS A1G_05140 NC_009882.1 867395 868072 R COG0602 Organic radical activating enzymes; hypothetical protein complement(867395..868072) Rickettsia rickettsii str. 'Sheila Smith' 5648378 YP_001495030.1 CDS rpmI NC_009882.1 868239 868445 D COG0291 Ribosomal protein L35; 50S ribosomal protein L35 868239..868445 Rickettsia rickettsii str. 'Sheila Smith' 5647502 YP_001495031.1 CDS rplT NC_009882.1 868465 868818 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 868465..868818 Rickettsia rickettsii str. 'Sheila Smith' 5647503 YP_001495032.1 CDS rpmH NC_009882.1 868901 869035 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 868901..869035 Rickettsia rickettsii str. 'Sheila Smith' 5647504 YP_001495033.1 CDS rnpA NC_009882.1 869055 869411 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 869055..869411 Rickettsia rickettsii str. 'Sheila Smith' 5647505 YP_001495034.1 CDS A1G_05165 NC_009882.1 869777 871627 R COG0666 FOG: Ankyrin repeat; hypothetical protein complement(869777..871627) Rickettsia rickettsii str. 'Sheila Smith' 5647506 YP_001495035.1 CDS A1G_05170 NC_009882.1 872021 872272 R COG1471 Ribosomal protein S4E; hypothetical protein complement(872021..872272) Rickettsia rickettsii str. 'Sheila Smith' 5647507 YP_001495036.1 CDS A1G_05175 NC_009882.1 872933 873031 R hypothetical protein complement(872933..873031) Rickettsia rickettsii str. 'Sheila Smith' 5647508 YP_001495037.1 CDS A1G_05180 NC_009882.1 873251 873499 R hypothetical protein complement(873251..873499) Rickettsia rickettsii str. 'Sheila Smith' 5647509 YP_001495038.1 CDS A1G_05185 NC_009882.1 873717 874676 R COG0598 Mg2+ and Co2+ transporters; magnesium and cobalt transport protein CorA complement(873717..874676) Rickettsia rickettsii str. 'Sheila Smith' 5647510 YP_001495039.1 CDS A1G_05190 NC_009882.1 875046 875333 D hypothetical protein 875046..875333 Rickettsia rickettsii str. 'Sheila Smith' 5647511 YP_001495040.1 CDS A1G_05195 NC_009882.1 875305 875454 R hypothetical protein complement(875305..875454) Rickettsia rickettsii str. 'Sheila Smith' 5647512 YP_001495041.1 CDS A1G_05200 NC_009882.1 878361 878948 R COG3173 Predicted aminoglycoside phosphotransferase; acetyltransferase complement(878361..878948) Rickettsia rickettsii str. 'Sheila Smith' 5648536 YP_001495042.1 CDS A1G_05205 NC_009882.1 879047 879193 R COG3173 Predicted aminoglycoside phosphotransferase; acetyltransferase complement(879047..879193) Rickettsia rickettsii str. 'Sheila Smith' 5648537 YP_001495043.1 CDS A1G_05210 NC_009882.1 879286 881085 R COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; nitrogen regulation protein ntrY complement(879286..881085) Rickettsia rickettsii str. 'Sheila Smith' 5648538 YP_001495044.1 CDS rpsU NC_009882.1 881362 881451 R 30S ribosomal protein S21 complement(881362..881451) Rickettsia rickettsii str. 'Sheila Smith' 5648539 YP_001495045.1 CDS rpsU NC_009882.1 881444 881644 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(881444..881644) Rickettsia rickettsii str. 'Sheila Smith' 5648540 YP_001495046.1 CDS A1G_05225 NC_009882.1 881723 882334 D COG5590 Uncharacterized conserved protein; hypothetical protein 881723..882334 Rickettsia rickettsii str. 'Sheila Smith' 5648541 YP_001495047.1 CDS A1G_05230 NC_009882.1 882344 882553 D hypothetical protein 882344..882553 Rickettsia rickettsii str. 'Sheila Smith' 5648542 YP_001495048.1 CDS ileS NC_009882.1 882978 883100 D isoleucyl-tRNA synthetase 882978..883100 Rickettsia rickettsii str. 'Sheila Smith' 5648543 YP_001495049.1 CDS ileS NC_009882.1 883599 886910 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 883599..886910 Rickettsia rickettsii str. 'Sheila Smith' 5648544 YP_001495050.1 CDS A1G_05245 NC_009882.1 887373 887654 D hypothetical protein 887373..887654 Rickettsia rickettsii str. 'Sheila Smith' 5648141 YP_001495051.1 CDS A1G_05250 NC_009882.1 887825 888019 D hypothetical protein 887825..888019 Rickettsia rickettsii str. 'Sheila Smith' 5648142 YP_001495052.1 CDS A1G_05255 NC_009882.1 888729 888950 D COG1729 Uncharacterized protein conserved in bacteria; hypothetical protein 888729..888950 Rickettsia rickettsii str. 'Sheila Smith' 5648143 YP_001495053.1 CDS A1G_05260 NC_009882.1 889108 889260 R hypothetical protein complement(889108..889260) Rickettsia rickettsii str. 'Sheila Smith' 5648144 YP_001495054.1 CDS A1G_05265 NC_009882.1 889253 891250 R COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit; propionyl-CoA carboxylase subunit alpha complement(889253..891250) Rickettsia rickettsii str. 'Sheila Smith' 5648145 YP_001495055.1 CDS A1G_05270 NC_009882.1 891348 892892 R COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); propionyl-CoA carboxylase subunit beta complement(891348..892892) Rickettsia rickettsii str. 'Sheila Smith' 5648146 YP_001495056.1 CDS A1G_05275 NC_009882.1 892968 893216 D hypothetical protein 892968..893216 Rickettsia rickettsii str. 'Sheila Smith' 5648147 YP_001495057.1 CDS A1G_05280 NC_009882.1 893447 896869 D Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase 893447..896869 Rickettsia rickettsii str. 'Sheila Smith' 5648148 YP_001495058.1 CDS A1G_05285 NC_009882.1 897114 897251 R hypothetical protein complement(897114..897251) Rickettsia rickettsii str. 'Sheila Smith' 5648149 YP_001495059.1 CDS A1G_05300 NC_009882.1 898234 899103 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 898234..899103 Rickettsia rickettsii str. 'Sheila Smith' 5648150 YP_001495060.1 CDS gltX NC_009882.1 899402 900943 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 899402..900943 Rickettsia rickettsii str. 'Sheila Smith' 5648151 YP_001495061.1 CDS A1G_05310 NC_009882.1 900940 901476 D COG5342 Invasion protein B, involved in pathogenesis; hypothetical protein 900940..901476 Rickettsia rickettsii str. 'Sheila Smith' 5647717 YP_001495062.1 CDS groEL NC_009882.1 901727 901984 R chaperonin GroEL complement(901727..901984) Rickettsia rickettsii str. 'Sheila Smith' 5647718 YP_001495063.1 CDS groEL NC_009882.1 903262 904905 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(903262..904905) Rickettsia rickettsii str. 'Sheila Smith' 5647719 YP_001495064.1 CDS groES NC_009882.1 904933 905220 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(904933..905220) Rickettsia rickettsii str. 'Sheila Smith' 5647720 YP_001495065.1 CDS A1G_05340 NC_009882.1 906002 906106 R hypothetical protein complement(906002..906106) Rickettsia rickettsii str. 'Sheila Smith' 5647721 YP_001495066.1 CDS rph NC_009882.1 908437 909156 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(908437..909156) Rickettsia rickettsii str. 'Sheila Smith' 5647722 YP_001495067.1 CDS A1G_05370 NC_009882.1 909316 909915 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 909316..909915 Rickettsia rickettsii str. 'Sheila Smith' 5647723 YP_001495068.1 CDS A1G_05375 NC_009882.1 910048 911103 D COG0628 Predicted permease; hypothetical protein 910048..911103 Rickettsia rickettsii str. 'Sheila Smith' 5647724 YP_001495069.1 CDS A1G_05380 NC_009882.1 911119 911787 D COG0593 ATPase involved in DNA replication initiation; hypothetical protein 911119..911787 Rickettsia rickettsii str. 'Sheila Smith' 5647725 YP_001495070.1 CDS A1G_05385 NC_009882.1 912259 912405 D hypothetical protein 912259..912405 Rickettsia rickettsii str. 'Sheila Smith' 5647726 YP_001495071.1 CDS A1G_05400 NC_009882.1 913094 913327 R hypothetical protein complement(913094..913327) Rickettsia rickettsii str. 'Sheila Smith' 5647727 YP_001495072.1 CDS A1G_05405 NC_009882.1 913569 913868 D hypothetical protein 913569..913868 Rickettsia rickettsii str. 'Sheila Smith' 5648275 YP_001495073.1 CDS A1G_05410 NC_009882.1 913840 914376 D hypothetical protein 913840..914376 Rickettsia rickettsii str. 'Sheila Smith' 5648276 YP_001495074.1 CDS A1G_05415 NC_009882.1 915501 915677 D COG0477 Permeases of the major facilitator superfamily; MFS type sugar transporter 915501..915677 Rickettsia rickettsii str. 'Sheila Smith' 5648277 YP_001495075.1 CDS rpsT NC_009882.1 916256 916375 R 30S ribosomal protein S20 complement(916256..916375) Rickettsia rickettsii str. 'Sheila Smith' 5648278 YP_001495076.1 CDS rpsT NC_009882.1 917642 917920 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(917642..917920) Rickettsia rickettsii str. 'Sheila Smith' 5648280 YP_001495077.1 CDS rplQ NC_009882.1 917939 918349 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(917939..918349) Rickettsia rickettsii str. 'Sheila Smith' 5648281 YP_001495078.1 CDS A1G_05435 NC_009882.1 918360 919382 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(918360..919382) Rickettsia rickettsii str. 'Sheila Smith' 5648282 YP_001495079.1 CDS A1G_05440 NC_009882.1 919401 919784 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(919401..919784) Rickettsia rickettsii str. 'Sheila Smith' 5648283 YP_001495080.1 CDS rpsM NC_009882.1 919809 920186 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(919809..920186) Rickettsia rickettsii str. 'Sheila Smith' 5648284 YP_001495081.1 CDS adk NC_009882.1 920245 920883 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(920245..920883) Rickettsia rickettsii str. 'Sheila Smith' 5647985 YP_001495082.1 CDS secY NC_009882.1 920899 922200 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(920899..922200) Rickettsia rickettsii str. 'Sheila Smith' 5647986 YP_001495083.1 CDS rplO NC_009882.1 922204 922665 R late assembly protein; 50S ribosomal protein L15 complement(922204..922665) Rickettsia rickettsii str. 'Sheila Smith' 5647987 YP_001495084.1 CDS rpmD NC_009882.1 922679 922870 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(922679..922870) Rickettsia rickettsii str. 'Sheila Smith' 5647988 YP_001495085.1 CDS rpsE NC_009882.1 922894 923424 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(922894..923424) Rickettsia rickettsii str. 'Sheila Smith' 5647989 YP_001495086.1 CDS rplR NC_009882.1 923442 923789 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(923442..923789) Rickettsia rickettsii str. 'Sheila Smith' 5647990 YP_001495087.1 CDS rplF NC_009882.1 923805 924338 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(923805..924338) Rickettsia rickettsii str. 'Sheila Smith' 5647991 YP_001495088.1 CDS rpsH NC_009882.1 924347 924745 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(924347..924745) Rickettsia rickettsii str. 'Sheila Smith' 5647992 YP_001495089.1 CDS rpsN NC_009882.1 924765 925070 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(924765..925070) Rickettsia rickettsii str. 'Sheila Smith' 5647993 YP_001495090.1 CDS rplE NC_009882.1 925088 925627 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(925088..925627) Rickettsia rickettsii str. 'Sheila Smith' 5647994 YP_001495091.1 CDS rplX NC_009882.1 925627 925956 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(925627..925956) Rickettsia rickettsii str. 'Sheila Smith' 5647995 YP_001495092.1 CDS rplN NC_009882.1 925957 926325 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(925957..926325) Rickettsia rickettsii str. 'Sheila Smith' 5647481 YP_001495093.1 CDS rpsQ NC_009882.1 926400 926633 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(926400..926633) Rickettsia rickettsii str. 'Sheila Smith' 5647482 YP_001495094.1 CDS rpmC NC_009882.1 926635 926850 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(926635..926850) Rickettsia rickettsii str. 'Sheila Smith' 5647483 YP_001495095.1 CDS rplP NC_009882.1 926843 927253 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(926843..927253) Rickettsia rickettsii str. 'Sheila Smith' 5647484 YP_001495096.1 CDS rpsC NC_009882.1 927268 927921 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(927268..927921) Rickettsia rickettsii str. 'Sheila Smith' 5647485 YP_001495097.1 CDS rplV NC_009882.1 927923 928282 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(927923..928282) Rickettsia rickettsii str. 'Sheila Smith' 5647486 YP_001495098.1 CDS rpsS NC_009882.1 928291 928569 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(928291..928569) Rickettsia rickettsii str. 'Sheila Smith' 5647487 YP_001495099.1 CDS rplB NC_009882.1 928594 929415 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(928594..929415) Rickettsia rickettsii str. 'Sheila Smith' 5647488 YP_001495100.1 CDS rplW NC_009882.1 929416 929712 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(929416..929712) Rickettsia rickettsii str. 'Sheila Smith' 5647489 YP_001495101.1 CDS rplD NC_009882.1 929709 930332 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(929709..930332) Rickettsia rickettsii str. 'Sheila Smith' 5647490 YP_001495102.1 CDS rplC NC_009882.1 930443 931090 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(930443..931090) Rickettsia rickettsii str. 'Sheila Smith' 5647491 YP_001495103.1 CDS rpsJ NC_009882.1 931091 931408 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(931091..931408) Rickettsia rickettsii str. 'Sheila Smith' 5647954 YP_001495104.1 CDS A1G_05565 NC_009882.1 931649 932833 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(931649..932833) Rickettsia rickettsii str. 'Sheila Smith' 5647955 YP_001495105.1 CDS A1G_05570 NC_009882.1 933407 934129 D COG0566 rRNA methylases; tRNA/rRNA methyltransferase 933407..934129 Rickettsia rickettsii str. 'Sheila Smith' 5647958 YP_001495106.1 CDS A1G_05575 NC_009882.1 934135 934287 R hypothetical protein complement(934135..934287) Rickettsia rickettsii str. 'Sheila Smith' 5647959 YP_001495107.1 CDS A1G_05580 NC_009882.1 934240 934692 D hypothetical protein 934240..934692 Rickettsia rickettsii str. 'Sheila Smith' 5647960 YP_001495108.1 CDS fumC NC_009882.1 934689 936080 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 934689..936080 Rickettsia rickettsii str. 'Sheila Smith' 5647961 YP_001495109.1 CDS A1G_05590 NC_009882.1 936177 936431 D COG4118 Antitoxin of toxin-antitoxin stability system; hypothetical protein 936177..936431 Rickettsia rickettsii str. 'Sheila Smith' 5647962 YP_001495110.1 CDS A1G_05595 NC_009882.1 936418 936741 D hypothetical protein 936418..936741 Rickettsia rickettsii str. 'Sheila Smith' 5648545 YP_001495111.1 CDS A1G_05600 NC_009882.1 936917 938275 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 936917..938275 Rickettsia rickettsii str. 'Sheila Smith' 5648546 YP_001495112.1 CDS A1G_05605 NC_009882.1 938777 939199 D hypothetical protein 938777..939199 Rickettsia rickettsii str. 'Sheila Smith' 5648547 YP_001495113.1 CDS A1G_05610 NC_009882.1 939379 939735 D COG4574 Serine protease inhibitor ecotin; ecotin 939379..939735 Rickettsia rickettsii str. 'Sheila Smith' 5648548 YP_001495114.1 CDS A1G_05615 NC_009882.1 939881 940453 R COG0694 Thioredoxin-like proteins and domains; hypothetical protein complement(939881..940453) Rickettsia rickettsii str. 'Sheila Smith' 5648549 YP_001495115.1 CDS A1G_05620 NC_009882.1 940801 941865 R COG0477 Permeases of the major facilitator superfamily; AmpG protein complement(940801..941865) Rickettsia rickettsii str. 'Sheila Smith' 5648550 YP_001495116.1 CDS A1G_05625 NC_009882.1 942217 943449 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase RhlE complement(942217..943449) Rickettsia rickettsii str. 'Sheila Smith' 5648551 YP_001495117.1 CDS A1G_05630 NC_009882.1 943964 944176 R COG1278 Cold shock proteins; cold shock-like protein complement(943964..944176) Rickettsia rickettsii str. 'Sheila Smith' 5648552 YP_001495118.1 CDS ksgA NC_009882.1 945574 946479 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(945574..946479) Rickettsia rickettsii str. 'Sheila Smith' 5648554 YP_001495119.1 CDS A1G_05640 NC_009882.1 946632 947519 R COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein complement(946632..947519) Rickettsia rickettsii str. 'Sheila Smith' 5648607 YP_001495120.1 CDS A1G_05645 NC_009882.1 947671 949767 R COG1452 Organic solvent tolerance protein OstA; hypothetical protein complement(947671..949767) Rickettsia rickettsii str. 'Sheila Smith' 5648608 YP_001495121.1 CDS xseA NC_009882.1 950042 951415 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 950042..951415 Rickettsia rickettsii str. 'Sheila Smith' 5648609 YP_001495122.1 CDS A1G_05665 NC_009882.1 951876 952079 D hypothetical protein 951876..952079 Rickettsia rickettsii str. 'Sheila Smith' 5648610 YP_001495123.1 CDS A1G_05670 NC_009882.1 952076 952858 D COG0708 Exonuclease III; exodeoxyribonuclease III 952076..952858 Rickettsia rickettsii str. 'Sheila Smith' 5648611 YP_001495124.1 CDS A1G_05675 NC_009882.1 952946 953212 D COG4095 Uncharacterized conserved protein; hypothetical protein 952946..953212 Rickettsia rickettsii str. 'Sheila Smith' 5648612 YP_001495125.1 CDS engA NC_009882.1 953029 953199 R GTP-binding protein EngA complement(953029..953199) Rickettsia rickettsii str. 'Sheila Smith' 5648613 YP_001495126.1 CDS engA NC_009882.1 953216 954559 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 953216..954559 Rickettsia rickettsii str. 'Sheila Smith' 5648614 YP_001495127.1 CDS A1G_05690 NC_009882.1 954621 954923 R COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein complement(954621..954923) Rickettsia rickettsii str. 'Sheila Smith' 5648615 YP_001495128.1 CDS A1G_05715 NC_009882.1 957007 957225 R hypothetical protein complement(957007..957225) Rickettsia rickettsii str. 'Sheila Smith' 5648616 YP_001495129.1 CDS A1G_05720 NC_009882.1 957411 957632 R hypothetical protein complement(957411..957632) Rickettsia rickettsii str. 'Sheila Smith' 5648617 YP_001495130.1 CDS A1G_05725 NC_009882.1 957629 959065 R COG0661 Predicted unusual protein kinase; ubiquinone biosynthesis protein complement(957629..959065) Rickettsia rickettsii str. 'Sheila Smith' 5647622 YP_001495131.1 CDS A1G_05730 NC_009882.1 959062 959241 R recombination protein F complement(959062..959241) Rickettsia rickettsii str. 'Sheila Smith' 5647623 YP_001495132.1 CDS ubiE NC_009882.1 959213 959959 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(959213..959959) Rickettsia rickettsii str. 'Sheila Smith' 5647624 YP_001495133.1 CDS A1G_05740 NC_009882.1 959988 960809 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 959988..960809 Rickettsia rickettsii str. 'Sheila Smith' 5647625 YP_001495134.1 CDS A1G_05745 NC_009882.1 960859 961575 D COG0836 Mannose-1-phosphate guanylyltransferase; hypothetical protein 960859..961575 Rickettsia rickettsii str. 'Sheila Smith' 5647626 YP_001495135.1 CDS A1G_05760 NC_009882.1 962108 962284 D hypothetical protein 962108..962284 Rickettsia rickettsii str. 'Sheila Smith' 5647627 YP_001495136.1 CDS A1G_05765 NC_009882.1 962756 963004 D hypothetical protein 962756..963004 Rickettsia rickettsii str. 'Sheila Smith' 5647628 YP_001495137.1 CDS A1G_05775 NC_009882.1 963450 963581 D hypothetical protein 963450..963581 Rickettsia rickettsii str. 'Sheila Smith' 5647629 YP_001495138.1 CDS A1G_05790 NC_009882.1 964671 964826 R COG2958 Uncharacterized protein conserved in bacteria; hypothetical protein complement(964671..964826) Rickettsia rickettsii str. 'Sheila Smith' 5647630 YP_001495139.1 CDS A1G_05795 NC_009882.1 965076 965162 R hypothetical protein complement(965076..965162) Rickettsia rickettsii str. 'Sheila Smith' 5647631 YP_001495140.1 CDS A1G_05800 NC_009882.1 965461 965607 R COG2958 Uncharacterized protein conserved in bacteria; hypothetical protein complement(965461..965607) Rickettsia rickettsii str. 'Sheila Smith' 5647632 YP_001495141.1 CDS A1G_05805 NC_009882.1 965649 966662 R COG0084 Mg-dependent DNase; hypothetical protein complement(965649..966662) Rickettsia rickettsii str. 'Sheila Smith' 5647422 YP_001495142.1 CDS A1G_05810 NC_009882.1 966715 968241 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(966715..968241) Rickettsia rickettsii str. 'Sheila Smith' 5647423 YP_001495143.1 CDS tmk NC_009882.1 968238 968849 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(968238..968849) Rickettsia rickettsii str. 'Sheila Smith' 5647424 YP_001495144.1 CDS A1G_05820 NC_009882.1 969108 970475 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 969108..970475 Rickettsia rickettsii str. 'Sheila Smith' 5647425 YP_001495145.1 CDS ubiA NC_009882.1 970626 971534 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase complement(970626..971534) Rickettsia rickettsii str. 'Sheila Smith' 5647426 YP_001495146.1 CDS A1G_05830 NC_009882.1 971595 971699 D hypothetical protein 971595..971699 Rickettsia rickettsii str. 'Sheila Smith' 5647427 YP_001495147.1 CDS valS NC_009882.1 972604 975042 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 972604..975042 Rickettsia rickettsii str. 'Sheila Smith' 5647428 YP_001495148.1 CDS A1G_05855 NC_009882.1 975011 975763 D COG3475 LPS biosynthesis protein; hypothetical protein 975011..975763 Rickettsia rickettsii str. 'Sheila Smith' 5647429 YP_001495149.1 CDS A1G_05860 NC_009882.1 975829 976629 D COG3475 LPS biosynthesis protein; hypothetical protein 975829..976629 Rickettsia rickettsii str. 'Sheila Smith' 5647430 YP_001495150.1 CDS A1G_05865 NC_009882.1 976722 977318 R COG1373 Predicted ATPase (AAA+ superfamily); ATPase complement(976722..977318) Rickettsia rickettsii str. 'Sheila Smith' 5647431 YP_001495151.1 CDS A1G_05870 NC_009882.1 977768 979054 D COG1322 Uncharacterized protein conserved in bacteria; hypothetical protein 977768..979054 Rickettsia rickettsii str. 'Sheila Smith' 5647432 YP_001495152.1 CDS A1G_05875 NC_009882.1 979199 979489 D hypothetical protein 979199..979489 Rickettsia rickettsii str. 'Sheila Smith' 5647611 YP_001495153.1 CDS A1G_05905 NC_009882.1 982741 982953 D hypothetical protein 982741..982953 Rickettsia rickettsii str. 'Sheila Smith' 5647612 YP_001495154.1 CDS A1G_05910 NC_009882.1 983281 983508 D hypothetical protein 983281..983508 Rickettsia rickettsii str. 'Sheila Smith' 5647613 YP_001495155.1 CDS A1G_05915 NC_009882.1 983569 983841 D putative oxidoreductase protein 983569..983841 Rickettsia rickettsii str. 'Sheila Smith' 5647614 YP_001495156.1 CDS A1G_05920 NC_009882.1 983971 984123 D hypothetical protein 983971..984123 Rickettsia rickettsii str. 'Sheila Smith' 5647615 YP_001495157.1 CDS clpX NC_009882.1 984621 985898 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(984621..985898) Rickettsia rickettsii str. 'Sheila Smith' 5647616 YP_001495158.1 CDS A1G_05930 NC_009882.1 985935 986486 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-alanine acetyltransferase complement(985935..986486) Rickettsia rickettsii str. 'Sheila Smith' 5647617 YP_001495159.1 CDS A1G_05935 NC_009882.1 986650 987336 R COG0603 Predicted PP-loop superfamily ATPase; trans-regulatory protein ExsB complement(986650..987336) Rickettsia rickettsii str. 'Sheila Smith' 5647618 YP_001495160.1 CDS A1G_05940 NC_009882.1 987333 987677 R COG1598 Uncharacterized conserved protein; hypothetical protein complement(987333..987677) Rickettsia rickettsii str. 'Sheila Smith' 5647619 YP_001495161.1 CDS A1G_05945 NC_009882.1 987709 987903 R hypothetical protein complement(987709..987903) Rickettsia rickettsii str. 'Sheila Smith' 5647620 YP_001495162.1 CDS A1G_05950 NC_009882.1 988361 990022 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein 988361..990022 Rickettsia rickettsii str. 'Sheila Smith' 5648358 YP_001495163.1 CDS A1G_05955 NC_009882.1 990325 990573 D hypothetical protein 990325..990573 Rickettsia rickettsii str. 'Sheila Smith' 5648359 YP_001495164.1 CDS A1G_05960 NC_009882.1 991314 992378 D COG0477 Permeases of the major facilitator superfamily; bicyclomycin resistance protein 991314..992378 Rickettsia rickettsii str. 'Sheila Smith' 5648360 YP_001495165.1 CDS A1G_05965 NC_009882.1 992452 993807 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; hypothetical protein 992452..993807 Rickettsia rickettsii str. 'Sheila Smith' 5648361 YP_001495166.1 CDS A1G_05970 NC_009882.1 993800 994465 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein 993800..994465 Rickettsia rickettsii str. 'Sheila Smith' 5648362 YP_001495167.1 CDS A1G_05975 NC_009882.1 994684 996585 D hypothetical protein 994684..996585 Rickettsia rickettsii str. 'Sheila Smith' 5648363 YP_001495168.1 CDS A1G_05980 NC_009882.1 996660 997934 D COG4536 Putative Mg2+ and Co2+ transporter CorB; hypothetical protein 996660..997934 Rickettsia rickettsii str. 'Sheila Smith' 5648364 YP_001495169.1 CDS A1G_05985 NC_009882.1 998257 999915 D COG1138 Cytochrome c biogenesis factor; cytochrome c-type biogenesis protein ccmF 998257..999915 Rickettsia rickettsii str. 'Sheila Smith' 5648365 YP_001495170.1 CDS A1G_05990 NC_009882.1 1000018 1000215 R hypothetical protein complement(1000018..1000215) Rickettsia rickettsii str. 'Sheila Smith' 5648366 YP_001495171.1 CDS A1G_05995 NC_009882.1 1000289 1000396 R hypothetical protein complement(1000289..1000396) Rickettsia rickettsii str. 'Sheila Smith' 5648367 YP_001495172.1 CDS A1G_06010 NC_009882.1 1000789 1000884 R hypothetical protein complement(1000789..1000884) Rickettsia rickettsii str. 'Sheila Smith' 5648347 YP_001495173.1 CDS A1G_06015 NC_009882.1 1001044 1001184 R hypothetical protein complement(1001044..1001184) Rickettsia rickettsii str. 'Sheila Smith' 5648348 YP_001495174.1 CDS A1G_06030 NC_009882.1 1002500 1007464 R COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; outer membrane protein B (cell surface antigen sca5) complement(1002500..1007464) Rickettsia rickettsii str. 'Sheila Smith' 5648349 YP_001495175.1 CDS A1G_06035 NC_009882.1 1007857 1008462 R COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein complement(1007857..1008462) Rickettsia rickettsii str. 'Sheila Smith' 5648350 YP_001495176.1 CDS A1G_06040 NC_009882.1 1008720 1009664 R COG1472 Beta-glucosidase-related glycosidases; hypothetical protein complement(1008720..1009664) Rickettsia rickettsii str. 'Sheila Smith' 5648351 YP_001495177.1 CDS A1G_06045 NC_009882.1 1009702 1009998 R COG0789 Predicted transcriptional regulators; hypothetical protein complement(1009702..1009998) Rickettsia rickettsii str. 'Sheila Smith' 5648352 YP_001495178.1 CDS A1G_06050 NC_009882.1 1010214 1010501 R COG0776 Bacterial nucleoid DNA-binding protein; integration host factor alpha-subunit complement(1010214..1010501) Rickettsia rickettsii str. 'Sheila Smith' 5648353 YP_001495179.1 CDS A1G_06055 NC_009882.1 1010648 1011115 R COG0141 Histidinol dehydrogenase; hypothetical protein complement(1010648..1011115) Rickettsia rickettsii str. 'Sheila Smith' 5648354 YP_001495180.1 CDS A1G_06060 NC_009882.1 1011598 1012068 D COG1225 Peroxiredoxin; bacterioferritin comigratory protein 1011598..1012068 Rickettsia rickettsii str. 'Sheila Smith' 5648355 YP_001495181.1 CDS A1G_06065 NC_009882.1 1012188 1013060 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1012188..1013060) Rickettsia rickettsii str. 'Sheila Smith' 5648356 YP_001495182.1 CDS lpxK NC_009882.1 1013035 1014000 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(1013035..1014000) Rickettsia rickettsii str. 'Sheila Smith' 5648357 YP_001495183.1 CDS A1G_06075 NC_009882.1 1014004 1014858 R COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein complement(1014004..1014858) Rickettsia rickettsii str. 'Sheila Smith' 5648717 YP_001495184.1 CDS A1G_06080 NC_009882.1 1014858 1015646 R COG2961 Protein involved in catabolism of external DNA; hypothetical protein complement(1014858..1015646) Rickettsia rickettsii str. 'Sheila Smith' 5648718 YP_001495185.1 CDS ligA NC_009882.1 1016354 1018423 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(1016354..1018423) Rickettsia rickettsii str. 'Sheila Smith' 5648719 YP_001495186.1 CDS tgt NC_009882.1 1018455 1018562 R queuine tRNA-ribosyltransferase complement(1018455..1018562) Rickettsia rickettsii str. 'Sheila Smith' 5648720 YP_001495187.1 CDS tgt NC_009882.1 1018710 1019795 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1018710..1019795) Rickettsia rickettsii str. 'Sheila Smith' 5648721 YP_001495188.1 CDS A1G_06100 NC_009882.1 1020437 1020736 D COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; hypothetical protein 1020437..1020736 Rickettsia rickettsii str. 'Sheila Smith' 5648722 YP_001495189.1 CDS A1G_06105 NC_009882.1 1022046 1022291 D hypothetical protein 1022046..1022291 Rickettsia rickettsii str. 'Sheila Smith' 5648723 YP_001495190.1 CDS A1G_06120 NC_009882.1 1023467 1023919 R hypothetical protein complement(1023467..1023919) Rickettsia rickettsii str. 'Sheila Smith' 5648724 YP_001495191.1 CDS A1G_06125 NC_009882.1 1023928 1024068 R hypothetical protein complement(1023928..1024068) Rickettsia rickettsii str. 'Sheila Smith' 5648725 YP_001495192.1 CDS A1G_06130 NC_009882.1 1024099 1024212 R hypothetical protein complement(1024099..1024212) Rickettsia rickettsii str. 'Sheila Smith' 5648726 YP_001495193.1 CDS A1G_06135 NC_009882.1 1024376 1024825 R COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; ABC transporter substrate binding protein complement(1024376..1024825) Rickettsia rickettsii str. 'Sheila Smith' 5648727 YP_001495194.1 CDS A1G_06140 NC_009882.1 1024846 1025145 R COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit; hypothetical protein complement(1024846..1025145) Rickettsia rickettsii str. 'Sheila Smith' 5647674 YP_001495195.1 CDS rnhA NC_009882.1 1025133 1025600 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(1025133..1025600) Rickettsia rickettsii str. 'Sheila Smith' 5647675 YP_001495196.1 CDS A1G_06150 NC_009882.1 1025600 1026073 R COG3814 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1025600..1026073) Rickettsia rickettsii str. 'Sheila Smith' 5647676 YP_001495197.1 CDS A1G_06155 NC_009882.1 1026853 1027665 D COG3494 Uncharacterized protein conserved in bacteria; hypothetical protein 1026853..1027665 Rickettsia rickettsii str. 'Sheila Smith' 5647677 YP_001495198.1 CDS coaE NC_009882.1 1027659 1028234 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1027659..1028234 Rickettsia rickettsii str. 'Sheila Smith' 5647678 YP_001495199.1 CDS A1G_06165 NC_009882.1 1028222 1028911 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1028222..1028911 Rickettsia rickettsii str. 'Sheila Smith' 5647679 YP_001495200.1 CDS A1G_06170 NC_009882.1 1029038 1029760 D COG3346 Uncharacterized conserved protein; surfeit locus protein 1 1029038..1029760 Rickettsia rickettsii str. 'Sheila Smith' 5647680 YP_001495201.1 CDS A1G_06175 NC_009882.1 1029816 1032284 D COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); ATP-dependent helicase 1029816..1032284 Rickettsia rickettsii str. 'Sheila Smith' 5647681 YP_001495202.1 CDS A1G_06180 NC_009882.1 1032401 1032577 R hypothetical protein complement(1032401..1032577) Rickettsia rickettsii str. 'Sheila Smith' 5647682 YP_001495203.1 CDS A1G_06185 NC_009882.1 1033019 1033333 R hypothetical protein complement(1033019..1033333) Rickettsia rickettsii str. 'Sheila Smith' 5647683 YP_001495204.1 CDS A1G_06190 NC_009882.1 1033543 1034487 D COG0331 (acyl-carrier-protein) S-malonyltransferase; acyl-carrier-protein S-malonyltransferase 1033543..1034487 Rickettsia rickettsii str. 'Sheila Smith' 5647684 YP_001495205.1 CDS A1G_06195 NC_009882.1 1034597 1034794 D hypothetical protein 1034597..1034794 Rickettsia rickettsii str. 'Sheila Smith' 5648193 YP_001495206.1 CDS A1G_06200 NC_009882.1 1034830 1035138 D hypothetical protein 1034830..1035138 Rickettsia rickettsii str. 'Sheila Smith' 5648194 YP_001495207.1 CDS A1G_06205 NC_009882.1 1035348 1035662 D hypothetical protein 1035348..1035662 Rickettsia rickettsii str. 'Sheila Smith' 5648195 YP_001495208.1 CDS A1G_06210 NC_009882.1 1036483 1036632 R hypothetical protein complement(1036483..1036632) Rickettsia rickettsii str. 'Sheila Smith' 5648197 YP_001495209.1 CDS A1G_06230 NC_009882.1 1037616 1037912 R hypothetical protein complement(1037616..1037912) Rickettsia rickettsii str. 'Sheila Smith' 5648198 YP_001495210.1 CDS A1G_06235 NC_009882.1 1038239 1038388 R hypothetical protein complement(1038239..1038388) Rickettsia rickettsii str. 'Sheila Smith' 5648199 YP_001495211.1 CDS A1G_06250 NC_009882.1 1039190 1039315 R hypothetical protein complement(1039190..1039315) Rickettsia rickettsii str. 'Sheila Smith' 5648200 YP_001495212.1 CDS A1G_06255 NC_009882.1 1039341 1039538 R hypothetical protein complement(1039341..1039538) Rickettsia rickettsii str. 'Sheila Smith' 5648201 YP_001495213.1 CDS A1G_06260 NC_009882.1 1039634 1040317 R COG3243 Poly(3-hydroxyalkanoate) synthetase; Poly-beta-hydroxybutyrate polymerase complement(1039634..1040317) Rickettsia rickettsii str. 'Sheila Smith' 5648202 YP_001495214.1 CDS A1G_06265 NC_009882.1 1040765 1042162 D COG3202 ATP/ADP translocase; ADP,ATP carrier protein 1040765..1042162 Rickettsia rickettsii str. 'Sheila Smith' 5648473 YP_001495215.1 CDS A1G_06270 NC_009882.1 1042473 1043027 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; (di)nucleoside polyphosphate hydrolase complement(1042473..1043027) Rickettsia rickettsii str. 'Sheila Smith' 5648474 YP_001495216.1 CDS A1G_06275 NC_009882.1 1043231 1043452 D COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance; hypothetical protein 1043231..1043452 Rickettsia rickettsii str. 'Sheila Smith' 5648475 YP_001495217.1 CDS A1G_06280 NC_009882.1 1043505 1044404 R COG1253 Hemolysins and related proteins containing CBS domains; hemolysin C complement(1043505..1044404) Rickettsia rickettsii str. 'Sheila Smith' 5648476 YP_001495218.1 CDS A1G_06285 NC_009882.1 1044421 1044924 R COG0319 Predicted metal-dependent hydrolase; putative metalloprotease complement(1044421..1044924) Rickettsia rickettsii str. 'Sheila Smith' 5648477 YP_001495219.1 CDS A1G_06290 NC_009882.1 1044951 1045088 R lipoyl synthase complement(1044951..1045088) Rickettsia rickettsii str. 'Sheila Smith' 5648478 YP_001495220.1 CDS A1G_06295 NC_009882.1 1045237 1045320 R hypothetical protein complement(1045237..1045320) Rickettsia rickettsii str. 'Sheila Smith' 5648479 YP_001495221.1 CDS A1G_06300 NC_009882.1 1045602 1046492 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1045602..1046492) Rickettsia rickettsii str. 'Sheila Smith' 5648480 YP_001495222.1 CDS glyA NC_009882.1 1046485 1047747 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1046485..1047747) Rickettsia rickettsii str. 'Sheila Smith' 5648481 YP_001495223.1 CDS A1G_06310 NC_009882.1 1047862 1048512 R COG0400 Predicted esterase; hypothetical protein complement(1047862..1048512) Rickettsia rickettsii str. 'Sheila Smith' 5648482 YP_001495224.1 CDS A1G_06315 NC_009882.1 1048668 1048991 R COG0278 Glutaredoxin-related protein; glutaredoxin-like protein grla complement(1048668..1048991) Rickettsia rickettsii str. 'Sheila Smith' 5648483 YP_001495225.1 CDS A1G_06320 NC_009882.1 1049041 1049673 D COG0177 Predicted EndoIII-related endonuclease; endonuclease III 1049041..1049673 Rickettsia rickettsii str. 'Sheila Smith' 5648389 YP_001495226.1 CDS A1G_06325 NC_009882.1 1049690 1049854 R hypothetical protein complement(1049690..1049854) Rickettsia rickettsii str. 'Sheila Smith' 5648390 YP_001495227.1 CDS A1G_06330 NC_009882.1 1049916 1050287 R hypothetical protein complement(1049916..1050287) Rickettsia rickettsii str. 'Sheila Smith' 5648391 YP_001495228.1 CDS A1G_06335 NC_009882.1 1050275 1050466 R hypothetical protein complement(1050275..1050466) Rickettsia rickettsii str. 'Sheila Smith' 5648392 YP_001495229.1 CDS A1G_06340 NC_009882.1 1050618 1050905 R hypothetical protein complement(1050618..1050905) Rickettsia rickettsii str. 'Sheila Smith' 5648393 YP_001495230.1 CDS A1G_06345 NC_009882.1 1050964 1051056 R hypothetical protein complement(1050964..1051056) Rickettsia rickettsii str. 'Sheila Smith' 5648394 YP_001495231.1 CDS A1G_06350 NC_009882.1 1051294 1051470 D COG5510 Predicted small secreted protein; hypothetical protein 1051294..1051470 Rickettsia rickettsii str. 'Sheila Smith' 5648395 YP_001495232.1 CDS A1G_06355 NC_009882.1 1051542 1052108 R hypothetical protein complement(1051542..1052108) Rickettsia rickettsii str. 'Sheila Smith' 5648396 YP_001495233.1 CDS A1G_06360 NC_009882.1 1052192 1052356 R hypothetical protein complement(1052192..1052356) Rickettsia rickettsii str. 'Sheila Smith' 5648397 YP_001495234.1 CDS A1G_06365 NC_009882.1 1052364 1052429 R hypothetical protein complement(1052364..1052429) Rickettsia rickettsii str. 'Sheila Smith' 5648398 YP_001495235.1 CDS A1G_06370 NC_009882.1 1052505 1053350 R COG0313 Predicted methyltransferases; hypothetical protein complement(1052505..1053350) Rickettsia rickettsii str. 'Sheila Smith' 5648399 YP_001495236.1 CDS A1G_06375 NC_009882.1 1053375 1054493 D COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; hypothetical protein 1053375..1054493 Rickettsia rickettsii str. 'Sheila Smith' 5647800 YP_001495237.1 CDS tatA NC_009882.1 1054654 1054815 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A complement(1054654..1054815) Rickettsia rickettsii str. 'Sheila Smith' 5647801 YP_001495238.1 CDS A1G_06385 NC_009882.1 1054896 1055495 D COG1267 Phosphatidylglycerophosphatase A and related proteins; phosphatidylglycerophosphatase A 1054896..1055495 Rickettsia rickettsii str. 'Sheila Smith' 5647802 YP_001495239.1 CDS rplU NC_009882.1 1055584 1055901 D COG0261 Ribosomal protein L21; 50S ribosomal protein L21 1055584..1055901 Rickettsia rickettsii str. 'Sheila Smith' 5647803 YP_001495240.1 CDS rpmA NC_009882.1 1055926 1056186 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1055926..1056186 Rickettsia rickettsii str. 'Sheila Smith' 5647804 YP_001495241.1 CDS A1G_06400 NC_009882.1 1056470 1057675 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1056470..1057675 Rickettsia rickettsii str. 'Sheila Smith' 5647805 YP_001495242.1 CDS A1G_06405 NC_009882.1 1057958 1058452 D COG1396 Predicted transcriptional regulators; hypothetical protein 1057958..1058452 Rickettsia rickettsii str. 'Sheila Smith' 5647806 YP_001495243.1 CDS A1G_06410 NC_009882.1 1058461 1058772 D hypothetical protein 1058461..1058772 Rickettsia rickettsii str. 'Sheila Smith' 5647807 YP_001495244.1 CDS A1G_06415 NC_009882.1 1058857 1059108 D COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold; hypothetical protein 1058857..1059108 Rickettsia rickettsii str. 'Sheila Smith' 5647808 YP_001495245.1 CDS A1G_06420 NC_009882.1 1059207 1059329 D hypothetical protein 1059207..1059329 Rickettsia rickettsii str. 'Sheila Smith' 5647809 YP_001495246.1 CDS A1G_06425 NC_009882.1 1059427 1059510 D hypothetical protein 1059427..1059510 Rickettsia rickettsii str. 'Sheila Smith' 5647810 YP_001495247.1 CDS A1G_06430 NC_009882.1 1059643 1060230 R hypothetical protein complement(1059643..1060230) Rickettsia rickettsii str. 'Sheila Smith' 5647589 YP_001495248.1 CDS A1G_06435 NC_009882.1 1060332 1061573 R COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter complement(1060332..1061573) Rickettsia rickettsii str. 'Sheila Smith' 5647590 YP_001495249.1 CDS A1G_06440 NC_009882.1 1061801 1061923 R hypothetical protein complement(1061801..1061923) Rickettsia rickettsii str. 'Sheila Smith' 5647591 YP_001495250.1 CDS A1G_06445 NC_009882.1 1061901 1062218 R COG3027 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1061901..1062218) Rickettsia rickettsii str. 'Sheila Smith' 5647592 YP_001495251.1 CDS A1G_06450 NC_009882.1 1062221 1062568 R hypothetical protein complement(1062221..1062568) Rickettsia rickettsii str. 'Sheila Smith' 5647593 YP_001495252.1 CDS A1G_06455 NC_009882.1 1062575 1062928 R COG1426 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1062575..1062928) Rickettsia rickettsii str. 'Sheila Smith' 5647594 YP_001495253.1 CDS A1G_06460 NC_009882.1 1062932 1067686 R COG2902 NAD-specific glutamate dehydrogenase; hypothetical protein complement(1062932..1067686) Rickettsia rickettsii str. 'Sheila Smith' 5647595 YP_001495254.1 CDS trmE NC_009882.1 1067768 1069105 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1067768..1069105 Rickettsia rickettsii str. 'Sheila Smith' 5647596 YP_001495255.1 CDS A1G_06470 NC_009882.1 1069498 1070799 D hypothetical protein 1069498..1070799 Rickettsia rickettsii str. 'Sheila Smith' 5647597 YP_001495256.1 CDS A1G_06475 NC_009882.1 1071433 1071672 R hypothetical protein complement(1071433..1071672) Rickettsia rickettsii str. 'Sheila Smith' 5647598 YP_001495257.1 CDS A1G_06480 NC_009882.1 1071686 1071820 R hypothetical protein complement(1071686..1071820) Rickettsia rickettsii str. 'Sheila Smith' 5647599 YP_001495258.1 CDS A1G_06485 NC_009882.1 1072290 1072517 R hypothetical protein complement(1072290..1072517) Rickettsia rickettsii str. 'Sheila Smith' 5647411 YP_001495259.1 CDS recA NC_009882.1 1073208 1074296 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1073208..1074296 Rickettsia rickettsii str. 'Sheila Smith' 5647412 YP_001495260.1 CDS fabG NC_009882.1 1074289 1075014 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1074289..1075014 Rickettsia rickettsii str. 'Sheila Smith' 5647413 YP_001495261.1 CDS A1G_06500 NC_009882.1 1074975 1075160 R hypothetical protein complement(1074975..1075160) Rickettsia rickettsii str. 'Sheila Smith' 5647414 YP_001495262.1 CDS acpP NC_009882.1 1075193 1075438 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1075193..1075438 Rickettsia rickettsii str. 'Sheila Smith' 5647415 YP_001495263.1 CDS A1G_06510 NC_009882.1 1075472 1076758 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1075472..1076758 Rickettsia rickettsii str. 'Sheila Smith' 5647416 YP_001495264.1 CDS A1G_06515 NC_009882.1 1077040 1078821 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 1077040..1078821 Rickettsia rickettsii str. 'Sheila Smith' 5647417 YP_001495265.1 CDS A1G_06520 NC_009882.1 1078898 1079968 D COG1196 Chromosome segregation ATPases; hypothetical protein 1078898..1079968 Rickettsia rickettsii str. 'Sheila Smith' 5647418 YP_001495266.1 CDS A1G_06525 NC_009882.1 1079986 1080216 D hypothetical protein 1079986..1080216 Rickettsia rickettsii str. 'Sheila Smith' 5647419 YP_001495267.1 CDS A1G_06530 NC_009882.1 1080244 1081398 R COG1373 Predicted ATPase (AAA+ superfamily); ATPase complement(1080244..1081398) Rickettsia rickettsii str. 'Sheila Smith' 5647420 YP_001495268.1 CDS gmk NC_009882.1 1081468 1082157 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1081468..1082157) Rickettsia rickettsii str. 'Sheila Smith' 5647421 YP_001495269.1 CDS A1G_06540 NC_009882.1 1082298 1082534 R COG1396 Predicted transcriptional regulators; hypothetical protein complement(1082298..1082534) Rickettsia rickettsii str. 'Sheila Smith' 5648503 YP_001495270.1 CDS A1G_06545 NC_009882.1 1082886 1083725 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1082886..1083725) Rickettsia rickettsii str. 'Sheila Smith' 5648504 YP_001495271.1 CDS A1G_06550 NC_009882.1 1083728 1084768 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1083728..1084768) Rickettsia rickettsii str. 'Sheila Smith' 5648505 YP_001495272.1 CDS A1G_06555 NC_009882.1 1084979 1086067 R COG0795 Predicted permeases; hypothetical protein complement(1084979..1086067) Rickettsia rickettsii str. 'Sheila Smith' 5648506 YP_001495273.1 CDS A1G_06560 NC_009882.1 1086496 1086963 R COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated lipoprotein complement(1086496..1086963) Rickettsia rickettsii str. 'Sheila Smith' 5648508 YP_001495274.1 CDS A1G_06565 NC_009882.1 1087179 1087448 D hypothetical protein 1087179..1087448 Rickettsia rickettsii str. 'Sheila Smith' 5648509 YP_001495275.1 CDS A1G_06570 NC_009882.1 1087438 1088394 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1087438..1088394) Rickettsia rickettsii str. 'Sheila Smith' 5648510 YP_001495276.1 CDS rpmF NC_009882.1 1088402 1088602 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1088402..1088602) Rickettsia rickettsii str. 'Sheila Smith' 5648511 YP_001495277.1 CDS A1G_06580 NC_009882.1 1088698 1089171 D COG2913 Small protein A (tmRNA-binding); hypothetical protein 1088698..1089171 Rickettsia rickettsii str. 'Sheila Smith' 5648512 YP_001495278.1 CDS A1G_06585 NC_009882.1 1089375 1090286 D COG0552 Signal recognition particle GTPase; cell division protein ftsY 1089375..1090286 Rickettsia rickettsii str. 'Sheila Smith' 5647863 YP_001495279.1 CDS A1G_06590 NC_009882.1 1090450 1093077 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1090450..1093077 Rickettsia rickettsii str. 'Sheila Smith' 5647864 YP_001495280.1 CDS A1G_06605 NC_009882.1 1093598 1093933 D COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 1093598..1093933 Rickettsia rickettsii str. 'Sheila Smith' 5647865 YP_001495281.1 CDS A1G_06620 NC_009882.1 1094442 1094684 D hypothetical protein 1094442..1094684 Rickettsia rickettsii str. 'Sheila Smith' 5647866 YP_001495282.1 CDS A1G_06625 NC_009882.1 1094746 1095006 D hypothetical protein 1094746..1095006 Rickettsia rickettsii str. 'Sheila Smith' 5647867 YP_001495283.1 CDS A1G_06630 NC_009882.1 1095179 1095421 D hypothetical protein 1095179..1095421 Rickettsia rickettsii str. 'Sheila Smith' 5647868 YP_001495284.1 CDS A1G_06635 NC_009882.1 1095461 1095766 D hypothetical protein 1095461..1095766 Rickettsia rickettsii str. 'Sheila Smith' 5647869 YP_001495285.1 CDS dnaE NC_009882.1 1095658 1099203 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(1095658..1099203) Rickettsia rickettsii str. 'Sheila Smith' 5647870 YP_001495286.1 CDS A1G_06645 NC_009882.1 1099339 1100637 R COG1004 Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase complement(1099339..1100637) Rickettsia rickettsii str. 'Sheila Smith' 5647871 YP_001495287.1 CDS A1G_06650 NC_009882.1 1100886 1103396 D hypothetical protein 1100886..1103396 Rickettsia rickettsii str. 'Sheila Smith' 5647872 YP_001495288.1 CDS A1G_06655 NC_009882.1 1103534 1105075 D COG0477 Permeases of the major facilitator superfamily; AmpG protein 1103534..1105075 Rickettsia rickettsii str. 'Sheila Smith' 5647873 YP_001495289.1 CDS A1G_06660 NC_009882.1 1105142 1105897 D COG0805 Sec-independent protein secretion pathway component TatC; sec-independent protein translocase protein TatC 1105142..1105897 Rickettsia rickettsii str. 'Sheila Smith' 5647567 YP_001495290.1 CDS A1G_06665 NC_009882.1 1105875 1107152 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1105875..1107152 Rickettsia rickettsii str. 'Sheila Smith' 5647568 YP_001495291.1 CDS A1G_06670 NC_009882.1 1107497 1109929 D COG3451 Type IV secretory pathway, VirB4 components; virB4 protein 1107497..1109929 Rickettsia rickettsii str. 'Sheila Smith' 5647569 YP_001495292.1 CDS A1G_06675 NC_009882.1 1110065 1113553 D hypothetical protein 1110065..1113553 Rickettsia rickettsii str. 'Sheila Smith' 5647570 YP_001495293.1 CDS A1G_06680 NC_009882.1 1113558 1114463 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; tellurium resistance protein TerC 1113558..1114463 Rickettsia rickettsii str. 'Sheila Smith' 5647571 YP_001495294.1 CDS A1G_06685 NC_009882.1 1114507 1115217 D COG3637 Opacity protein and related surface antigens; hypothetical protein 1114507..1115217 Rickettsia rickettsii str. 'Sheila Smith' 5647572 YP_001495295.1 CDS A1G_06690 NC_009882.1 1115303 1116967 D COG0500 SAM-dependent methyltransferases; hypothetical protein 1115303..1116967 Rickettsia rickettsii str. 'Sheila Smith' 5647573 YP_001495296.1 CDS A1G_06695 NC_009882.1 1117010 1117246 D hypothetical protein 1117010..1117246 Rickettsia rickettsii str. 'Sheila Smith' 5647574 YP_001495297.1 CDS A1G_06700 NC_009882.1 1117305 1117733 D COG2944 Predicted transcriptional regulator; hypothetical protein 1117305..1117733 Rickettsia rickettsii str. 'Sheila Smith' 5647575 YP_001495298.1 CDS A1G_06705 NC_009882.1 1117766 1118383 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1117766..1118383 Rickettsia rickettsii str. 'Sheila Smith' 5647576 YP_001495299.1 CDS A1G_06710 NC_009882.1 1118376 1118690 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1118376..1118690 Rickettsia rickettsii str. 'Sheila Smith' 5647577 YP_001495300.1 CDS A1G_06715 NC_009882.1 1118690 1120663 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1118690..1120663 Rickettsia rickettsii str. 'Sheila Smith' 5647963 YP_001495301.1 CDS A1G_06720 NC_009882.1 1120817 1122298 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1120817..1122298 Rickettsia rickettsii str. 'Sheila Smith' 5647964 YP_001495302.1 CDS A1G_06725 NC_009882.1 1122652 1123227 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1122652..1123227 Rickettsia rickettsii str. 'Sheila Smith' 5647965 YP_001495303.1 CDS A1G_06730 NC_009882.1 1123709 1124188 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1123709..1124188) Rickettsia rickettsii str. 'Sheila Smith' 5647966 YP_001495304.1 CDS A1G_06735 NC_009882.1 1124375 1125394 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1124375..1125394) Rickettsia rickettsii str. 'Sheila Smith' 5647967 YP_001495305.1 CDS A1G_06740 NC_009882.1 1125516 1127546 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(1125516..1127546) Rickettsia rickettsii str. 'Sheila Smith' 5647968 YP_001495306.1 CDS A1G_06745 NC_009882.1 1127534 1127890 R COG3671 Predicted membrane protein; hypothetical protein complement(1127534..1127890) Rickettsia rickettsii str. 'Sheila Smith' 5647969 YP_001495307.1 CDS A1G_06750 NC_009882.1 1128059 1130695 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1128059..1130695) Rickettsia rickettsii str. 'Sheila Smith' 5647970 YP_001495308.1 CDS atpC NC_009882.1 1130877 1131215 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1130877..1131215) Rickettsia rickettsii str. 'Sheila Smith' 5647971 YP_001495309.1 CDS A1G_06760 NC_009882.1 1131273 1132694 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1131273..1132694) Rickettsia rickettsii str. 'Sheila Smith' 5647972 YP_001495310.1 CDS A1G_06765 NC_009882.1 1132867 1133838 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1132867..1133838) Rickettsia rickettsii str. 'Sheila Smith' 5647973 YP_001495311.1 CDS A1G_06770 NC_009882.1 1133972 1135504 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1133972..1135504) Rickettsia rickettsii str. 'Sheila Smith' 5647513 YP_001495312.1 CDS A1G_06775 NC_009882.1 1135670 1136224 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1135670..1136224) Rickettsia rickettsii str. 'Sheila Smith' 5647514 YP_001495313.1 CDS A1G_06780 NC_009882.1 1136388 1137767 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1136388..1137767) Rickettsia rickettsii str. 'Sheila Smith' 5647515 YP_001495314.1 CDS A1G_06785 NC_009882.1 1137922 1138350 R COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Strees induced DNA-binding protein complement(1137922..1138350) Rickettsia rickettsii str. 'Sheila Smith' 5647516 YP_001495315.1 CDS A1G_06790 NC_009882.1 1138547 1138807 D hypothetical protein 1138547..1138807 Rickettsia rickettsii str. 'Sheila Smith' 5647517 YP_001495316.1 CDS A1G_06795 NC_009882.1 1139018 1139221 D hypothetical protein 1139018..1139221 Rickettsia rickettsii str. 'Sheila Smith' 5647518 YP_001495317.1 CDS A1G_06800 NC_009882.1 1139309 1139425 D hypothetical protein 1139309..1139425 Rickettsia rickettsii str. 'Sheila Smith' 5647519 YP_001495318.1 CDS A1G_06805 NC_009882.1 1139684 1139986 R COG2602 Beta-lactamase class D; hypothetical protein complement(1139684..1139986) Rickettsia rickettsii str. 'Sheila Smith' 5647520 YP_001495319.1 CDS A1G_06810 NC_009882.1 1140125 1140397 R COG2602 Beta-lactamase class D; hypothetical protein complement(1140125..1140397) Rickettsia rickettsii str. 'Sheila Smith' 5647521 YP_001495320.1 CDS A1G_06815 NC_009882.1 1140829 1143201 R COG5009 Membrane carboxypeptidase/penicillin-binding protein; penicillin-binding protein 1a complement(1140829..1143201) Rickettsia rickettsii str. 'Sheila Smith' 5647522 YP_001495321.1 CDS A1G_06820 NC_009882.1 1143205 1144542 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1143205..1144542) Rickettsia rickettsii str. 'Sheila Smith' 5647523 YP_001495322.1 CDS A1G_06830 NC_009882.1 1145297 1145404 R hypothetical protein complement(1145297..1145404) Rickettsia rickettsii str. 'Sheila Smith' 5647996 YP_001495323.1 CDS A1G_06845 NC_009882.1 1145815 1145958 R hypothetical protein complement(1145815..1145958) Rickettsia rickettsii str. 'Sheila Smith' 5647997 YP_001495324.1 CDS A1G_06850 NC_009882.1 1145998 1146147 R hypothetical protein complement(1145998..1146147) Rickettsia rickettsii str. 'Sheila Smith' 5647998 YP_001495325.1 CDS A1G_06855 NC_009882.1 1146228 1146581 R hypothetical protein complement(1146228..1146581) Rickettsia rickettsii str. 'Sheila Smith' 5647999 YP_001495326.1 CDS A1G_06860 NC_009882.1 1146748 1147017 D hypothetical protein 1146748..1147017 Rickettsia rickettsii str. 'Sheila Smith' 5648000 YP_001495327.1 CDS A1G_06865 NC_009882.1 1146886 1147365 R COG3807 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1146886..1147365) Rickettsia rickettsii str. 'Sheila Smith' 5648001 YP_001495328.1 CDS A1G_06870 NC_009882.1 1147358 1149085 R COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein kefB complement(1147358..1149085) Rickettsia rickettsii str. 'Sheila Smith' 5648002 YP_001495329.1 CDS A1G_06875 NC_009882.1 1149082 1149408 R COG0799 Uncharacterized homolog of plant Iojap protein; Iojap-related protein complement(1149082..1149408) Rickettsia rickettsii str. 'Sheila Smith' 5648003 YP_001495330.1 CDS A1G_06880 NC_009882.1 1149564 1149803 D COG0271 Stress-induced morphogen (activity unknown); hypothetical protein 1149564..1149803 Rickettsia rickettsii str. 'Sheila Smith' 5648004 YP_001495331.1 CDS A1G_06890 NC_009882.1 1151064 1151249 D hypothetical protein 1151064..1151249 Rickettsia rickettsii str. 'Sheila Smith' 5648005 YP_001495332.1 CDS A1G_06895 NC_009882.1 1151463 1151654 D hypothetical protein 1151463..1151654 Rickettsia rickettsii str. 'Sheila Smith' 5648006 YP_001495333.1 CDS A1G_06905 NC_009882.1 1152365 1152502 D hypothetical protein 1152365..1152502 Rickettsia rickettsii str. 'Sheila Smith' 5647874 YP_001495334.1 CDS A1G_06910 NC_009882.1 1152910 1153230 R hypothetical protein complement(1152910..1153230) Rickettsia rickettsii str. 'Sheila Smith' 5647875 YP_001495335.1 CDS A1G_06915 NC_009882.1 1153240 1153524 R cell surface antigen-like protein Sca13 complement(1153240..1153524) Rickettsia rickettsii str. 'Sheila Smith' 5647876 YP_001495336.1 CDS A1G_06935 NC_009882.1 1155655 1155897 R hypothetical protein complement(1155655..1155897) Rickettsia rickettsii str. 'Sheila Smith' 5647877 YP_001495337.1 CDS A1G_06940 NC_009882.1 1156418 1156660 R hypothetical protein complement(1156418..1156660) Rickettsia rickettsii str. 'Sheila Smith' 5647878 YP_001495338.1 CDS infA NC_009882.1 1157376 1157591 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1157376..1157591 Rickettsia rickettsii str. 'Sheila Smith' 5647880 YP_001495339.1 CDS A1G_06950 NC_009882.1 1157603 1158250 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1157603..1158250 Rickettsia rickettsii str. 'Sheila Smith' 5647881 YP_001495340.1 CDS A1G_06955 NC_009882.1 1158384 1158815 R COG1734 DnaK suppressor protein; hypothetical protein complement(1158384..1158815) Rickettsia rickettsii str. 'Sheila Smith' 5647882 YP_001495341.1 CDS xerC NC_009882.1 1158983 1159900 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1158983..1159900) Rickettsia rickettsii str. 'Sheila Smith' 5647883 YP_001495342.1 CDS A1G_06965 NC_009882.1 1160211 1160360 D phasin family protein 1160211..1160360 Rickettsia rickettsii str. 'Sheila Smith' 5648739 YP_001495343.1 CDS A1G_06970 NC_009882.1 1160408 1161010 R COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; hypothetical protein complement(1160408..1161010) Rickettsia rickettsii str. 'Sheila Smith' 5648740 YP_001495344.1 CDS A1G_06975 NC_009882.1 1161159 1161302 R hypothetical protein complement(1161159..1161302) Rickettsia rickettsii str. 'Sheila Smith' 5648741 YP_001495345.1 CDS A1G_06980 NC_009882.1 1161729 1163207 R COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein complement(1161729..1163207) Rickettsia rickettsii str. 'Sheila Smith' 5648742 YP_001495346.1 CDS A1G_06985 NC_009882.1 1163354 1164928 R COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein complement(1163354..1164928) Rickettsia rickettsii str. 'Sheila Smith' 5648743 YP_001495347.1 CDS A1G_06990 NC_009882.1 1165122 1171871 R hypothetical protein complement(1165122..1171871) Rickettsia rickettsii str. 'Sheila Smith' 5648744 YP_001495348.1 CDS A1G_06995 NC_009882.1 1171981 1172115 D COG1140 Nitrate reductase beta subunit; hypothetical protein 1171981..1172115 Rickettsia rickettsii str. 'Sheila Smith' 5648745 YP_001495349.1 CDS A1G_07000 NC_009882.1 1172112 1172222 R hypothetical protein complement(1172112..1172222) Rickettsia rickettsii str. 'Sheila Smith' 5648746 YP_001495350.1 CDS A1G_07005 NC_009882.1 1172380 1172475 R hypothetical protein complement(1172380..1172475) Rickettsia rickettsii str. 'Sheila Smith' 5648747 YP_001495351.1 CDS A1G_07010 NC_009882.1 1172650 1174884 R COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; hypothetical protein complement(1172650..1174884) Rickettsia rickettsii str. 'Sheila Smith' 5648748 YP_001495352.1 CDS A1G_07015 NC_009882.1 1175135 1175920 R COG1835 Predicted acyltransferases; hypothetical protein complement(1175135..1175920) Rickettsia rickettsii str. 'Sheila Smith' 5648749 YP_001495353.1 CDS A1G_07020 NC_009882.1 1176081 1176860 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1176081..1176860 Rickettsia rickettsii str. 'Sheila Smith' 5648099 YP_001495354.1 CDS A1G_07025 NC_009882.1 1177111 1177422 D COG2003 DNA repair proteins; hypothetical protein 1177111..1177422 Rickettsia rickettsii str. 'Sheila Smith' 5648100 YP_001495355.1 CDS A1G_07030 NC_009882.1 1177427 1177795 D COG2003 DNA repair proteins; hypothetical protein 1177427..1177795 Rickettsia rickettsii str. 'Sheila Smith' 5648101 YP_001495356.1 CDS A1G_07035 NC_009882.1 1177782 1178765 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 1177782..1178765 Rickettsia rickettsii str. 'Sheila Smith' 5648102 YP_001495357.1 CDS A1G_07040 NC_009882.1 1178762 1179085 D hypothetical protein 1178762..1179085 Rickettsia rickettsii str. 'Sheila Smith' 5648103 YP_001495358.1 CDS A1G_07045 NC_009882.1 1179567 1180307 R COG3637 Opacity protein and related surface antigens; hypothetical protein complement(1179567..1180307) Rickettsia rickettsii str. 'Sheila Smith' 5648104 YP_001495359.1 CDS A1G_07050 NC_009882.1 1180549 1181223 R COG3637 Opacity protein and related surface antigens; hypothetical protein complement(1180549..1181223) Rickettsia rickettsii str. 'Sheila Smith' 5648105 YP_001495360.1 CDS A1G_07055 NC_009882.1 1181458 1181808 R COG1146 Ferredoxin; ferredoxin complement(1181458..1181808) Rickettsia rickettsii str. 'Sheila Smith' 5648106 YP_001495361.1 CDS A1G_07060 NC_009882.1 1181813 1182505 R COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component; heme exporter protein C complement(1181813..1182505) Rickettsia rickettsii str. 'Sheila Smith' 5648107 YP_001495362.1 CDS A1G_07065 NC_009882.1 1182520 1183026 R COG0590 Cytosine/adenosine deaminases; cytosine deaminase complement(1182520..1183026) Rickettsia rickettsii str. 'Sheila Smith' 5648108 YP_001495363.1 CDS A1G_07070 NC_009882.1 1183007 1183912 R COG0053 Predicted Co/Zn/Cd cation transporters; protein p34 complement(1183007..1183912) Rickettsia rickettsii str. 'Sheila Smith' 5648109 YP_001495364.1 CDS A1G_07075 NC_009882.1 1184114 1184593 D COG4520 Surface antigen; 17 kD surface antigen 1184114..1184593 Rickettsia rickettsii str. 'Sheila Smith' 5648673 YP_001495365.1 CDS A1G_07080 NC_009882.1 1184724 1184993 D COG1881 Phospholipid-binding protein; hypothetical protein 1184724..1184993 Rickettsia rickettsii str. 'Sheila Smith' 5648674 YP_001495366.1 CDS A1G_07085 NC_009882.1 1185329 1186030 D COG1121 ABC-type Mn/Zn transport systems, ATPase component; zinc ABC transporter ATP-binding protein 1185329..1186030 Rickettsia rickettsii str. 'Sheila Smith' 5648675 YP_001495367.1 CDS A1G_07090 NC_009882.1 1186127 1186504 R hypothetical protein complement(1186127..1186504) Rickettsia rickettsii str. 'Sheila Smith' 5648676 YP_001495368.1 CDS A1G_07095 NC_009882.1 1186756 1186848 R hypothetical protein complement(1186756..1186848) Rickettsia rickettsii str. 'Sheila Smith' 5648677 YP_001495369.1 CDS A1G_07100 NC_009882.1 1186829 1187119 R hypothetical protein complement(1186829..1187119) Rickettsia rickettsii str. 'Sheila Smith' 5648678 YP_001495370.1 CDS A1G_07105 NC_009882.1 1187342 1187629 R hypothetical protein complement(1187342..1187629) Rickettsia rickettsii str. 'Sheila Smith' 5648679 YP_001495371.1 CDS A1G_07110 NC_009882.1 1187767 1188048 R hypothetical protein complement(1187767..1188048) Rickettsia rickettsii str. 'Sheila Smith' 5648680 YP_001495372.1 CDS uvrA NC_009882.1 1188220 1191081 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1188220..1191081) Rickettsia rickettsii str. 'Sheila Smith' 5648681 YP_001495373.1 CDS A1G_07120 NC_009882.1 1191186 1191644 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1191186..1191644 Rickettsia rickettsii str. 'Sheila Smith' 5648682 YP_001495374.1 CDS A1G_07125 NC_009882.1 1191656 1192486 D hypothetical protein 1191656..1192486 Rickettsia rickettsii str. 'Sheila Smith' 5648683 YP_001495375.1 CDS A1G_07130 NC_009882.1 1192527 1192820 D MFS type sugar transporter 1192527..1192820 Rickettsia rickettsii str. 'Sheila Smith' 5648039 YP_001495376.1 CDS A1G_07135 NC_009882.1 1193313 1193675 R hypothetical protein complement(1193313..1193675) Rickettsia rickettsii str. 'Sheila Smith' 5648040 YP_001495377.1 CDS A1G_07140 NC_009882.1 1194163 1194480 D COG1872 Uncharacterized conserved protein; hypothetical protein 1194163..1194480 Rickettsia rickettsii str. 'Sheila Smith' 5648042 YP_001495378.1 CDS A1G_07145 NC_009882.1 1194624 1196489 D molecular chaperone; heat shock protein 90 1194624..1196489 Rickettsia rickettsii str. 'Sheila Smith' 5648043 YP_001495379.1 CDS A1G_07150 NC_009882.1 1196669 1197910 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 1196669..1197910 Rickettsia rickettsii str. 'Sheila Smith' 5648044 YP_001495380.1 CDS A1G_07155 NC_009882.1 1198695 1198988 D hypothetical protein 1198695..1198988 Rickettsia rickettsii str. 'Sheila Smith' 5648045 YP_001495381.1 CDS tig NC_009882.1 1199396 1200733 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1199396..1200733 Rickettsia rickettsii str. 'Sheila Smith' 5648046 YP_001495382.1 CDS obgE NC_009882.1 1200837 1201883 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1200837..1201883) Rickettsia rickettsii str. 'Sheila Smith' 5648047 YP_001495383.1 CDS gltA NC_009882.1 1201938 1203242 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1201938..1203242) Rickettsia rickettsii str. 'Sheila Smith' 5648048 YP_001495384.1 CDS A1G_07175 NC_009882.1 1203373 1203522 R COG3636 Predicted transcriptional regulator; transcriptional regulator complement(1203373..1203522) Rickettsia rickettsii str. 'Sheila Smith' 5648555 YP_001495385.1 CDS A1G_07180 NC_009882.1 1203885 1204670 R COG1573 Uracil-DNA glycosylase; hypothetical protein complement(1203885..1204670) Rickettsia rickettsii str. 'Sheila Smith' 5648556 YP_001495386.1 CDS A1G_07185 NC_009882.1 1204687 1205628 D COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 1204687..1205628 Rickettsia rickettsii str. 'Sheila Smith' 5648557 YP_001495387.1 CDS A1G_07190 NC_009882.1 1205913 1206125 D hypothetical protein 1205913..1206125 Rickettsia rickettsii str. 'Sheila Smith' 5648558 YP_001495388.1 CDS A1G_07195 NC_009882.1 1206276 1206461 D hypothetical protein 1206276..1206461 Rickettsia rickettsii str. 'Sheila Smith' 5648559 YP_001495389.1 CDS A1G_07200 NC_009882.1 1206470 1208044 D fusion of hemK/trmB; N-terminal HemK domain transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; C-terminal; bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase 1206470..1208044 Rickettsia rickettsii str. 'Sheila Smith' 5648560 YP_001495390.1 CDS A1G_07205 NC_009882.1 1208013 1208948 R COG0009 Putative translation factor (SUA5); hypothetical protein complement(1208013..1208948) Rickettsia rickettsii str. 'Sheila Smith' 5648561 YP_001495391.1 CDS glyS NC_009882.1 1208945 1210957 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1208945..1210957) Rickettsia rickettsii str. 'Sheila Smith' 5648562 YP_001495392.1 CDS glyQ NC_009882.1 1210936 1211802 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1210936..1211802) Rickettsia rickettsii str. 'Sheila Smith' 5648563 YP_001495393.1 CDS A1G_07220 NC_009882.1 1211857 1212240 R COG1487 Predicted nucleic acid-binding protein, contains PIN domain; hypothetical protein complement(1211857..1212240) Rickettsia rickettsii str. 'Sheila Smith' 5648564 YP_001495394.1 CDS A1G_07225 NC_009882.1 1212237 1212482 R hypothetical protein complement(1212237..1212482) Rickettsia rickettsii str. 'Sheila Smith' 5648565 YP_001495395.1 CDS A1G_07230 NC_009882.1 1212569 1213198 R COG1636 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1212569..1213198) Rickettsia rickettsii str. 'Sheila Smith' 5648640 YP_001495396.1 CDS A1G_07245 NC_009882.1 1214680 1215630 R hypothetical protein complement(1214680..1215630) Rickettsia rickettsii str. 'Sheila Smith' 5648641 YP_001495397.1 CDS A1G_07250 NC_009882.1 1215640 1216275 R COG1474 Cdc6-related protein, AAA superfamily ATPase; hypothetical protein complement(1215640..1216275) Rickettsia rickettsii str. 'Sheila Smith' 5648642 YP_001495398.1 CDS A1G_07255 NC_009882.1 1216350 1217921 R hypothetical protein complement(1216350..1217921) Rickettsia rickettsii str. 'Sheila Smith' 5648643 YP_001495399.1 CDS alaS NC_009882.1 1218119 1220752 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1218119..1220752 Rickettsia rickettsii str. 'Sheila Smith' 5648644 YP_001495400.1 CDS truA NC_009882.1 1220952 1221689 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1220952..1221689) Rickettsia rickettsii str. 'Sheila Smith' 5648645 YP_001495401.1 CDS A1G_07270 NC_009882.1 1221785 1223689 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(1221785..1223689) Rickettsia rickettsii str. 'Sheila Smith' 5648646 YP_001495402.1 CDS dnaG NC_009882.1 1223734 1225521 R synthesizes RNA primers at the replication forks; DNA primase complement(1223734..1225521) Rickettsia rickettsii str. 'Sheila Smith' 5648647 YP_001495403.1 CDS A1G_07280 NC_009882.1 1225526 1226140 R COG0170 Dolichol kinase; hypothetical protein complement(1225526..1226140) Rickettsia rickettsii str. 'Sheila Smith' 5648648 YP_001495404.1 CDS greA NC_009882.1 1226269 1226889 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1226269..1226889 Rickettsia rickettsii str. 'Sheila Smith' 5648649 YP_001495405.1 CDS A1G_07290 NC_009882.1 1227047 1227445 R COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(p) transhydrogenase subunit alpha complement(1227047..1227445) Rickettsia rickettsii str. 'Sheila Smith' 5648650 YP_001495406.1 CDS A1G_07295 NC_009882.1 1227442 1228566 R COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha complement(1227442..1228566) Rickettsia rickettsii str. 'Sheila Smith' 5648728 YP_001495407.1 CDS A1G_07300 NC_009882.1 1228642 1229280 D COG2834 Outer membrane lipoprotein-sorting protein; hypothetical protein 1228642..1229280 Rickettsia rickettsii str. 'Sheila Smith' 5648729 YP_001495408.1 CDS A1G_07305 NC_009882.1 1229502 1231031 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1229502..1231031 Rickettsia rickettsii str. 'Sheila Smith' 5648730 YP_001495409.1 CDS A1G_07310 NC_009882.1 1231051 1231374 D COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 1231051..1231374 Rickettsia rickettsii str. 'Sheila Smith' 5648731 YP_001495410.1 CDS A1G_07315 NC_009882.1 1231583 1231732 R hypothetical protein complement(1231583..1231732) Rickettsia rickettsii str. 'Sheila Smith' 5648732 YP_001495411.1 CDS A1G_07320 NC_009882.1 1231786 1231863 R hypothetical protein complement(1231786..1231863) Rickettsia rickettsii str. 'Sheila Smith' 5648733 YP_001495412.1 CDS A1G_07325 NC_009882.1 1231860 1232027 R hypothetical protein complement(1231860..1232027) Rickettsia rickettsii str. 'Sheila Smith' 5648734 YP_001495413.1 CDS A1G_07330 NC_009882.1 1232252 1232947 R COG3577 Predicted aspartyl protease; hypothetical protein complement(1232252..1232947) Rickettsia rickettsii str. 'Sheila Smith' 5648735 YP_001495414.1 CDS A1G_07335 NC_009882.1 1233008 1233226 R beta-lactamase AmpC complement(1233008..1233226) Rickettsia rickettsii str. 'Sheila Smith' 5648736 YP_001495415.1 CDS A1G_07340 NC_009882.1 1233489 1233671 D hypothetical protein 1233489..1233671 Rickettsia rickettsii str. 'Sheila Smith' 5648737 YP_001495416.1 CDS A1G_07345 NC_009882.1 1233787 1233873 R hypothetical protein complement(1233787..1233873) Rickettsia rickettsii str. 'Sheila Smith' 5648738 YP_001495417.1 CDS A1G_07350 NC_009882.1 1233866 1234000 R beta-lactamase AmpC complement(1233866..1234000) Rickettsia rickettsii str. 'Sheila Smith' 5648618 YP_001495418.1 CDS A1G_07355 NC_009882.1 1234144 1234383 R COG2161 Antitoxin of toxin-antitoxin stability system; antitoxin of toxin-antitoxin system StbD complement(1234144..1234383) Rickettsia rickettsii str. 'Sheila Smith' 5648619 YP_001495419.1 CDS A1G_07360 NC_009882.1 1234588 1235310 R COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter ATP-binding protein complement(1234588..1235310) Rickettsia rickettsii str. 'Sheila Smith' 5648620 YP_001495420.1 CDS A1G_07365 NC_009882.1 1235314 1236078 R COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein complement(1235314..1236078) Rickettsia rickettsii str. 'Sheila Smith' 5648621 YP_001495421.1 CDS A1G_07370 NC_009882.1 1236093 1236740 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 1236093..1236740 Rickettsia rickettsii str. 'Sheila Smith' 5648622 YP_001495422.1 CDS A1G_07375 NC_009882.1 1236834 1237097 D COG3077 DNA-damage-inducible protein J; DNA-damage-inducible protein J 1236834..1237097 Rickettsia rickettsii str. 'Sheila Smith' 5648623 YP_001495423.1 CDS A1G_07380 NC_009882.1 1237189 1237332 D COG3041 Uncharacterized protein conserved in bacteria; RelE/StbE family addiction module toxin 1237189..1237332 Rickettsia rickettsii str. 'Sheila Smith' 5648624 YP_001495424.1 CDS A1G_07385 NC_009882.1 1237534 1238550 D COG0795 Predicted permeases; hypothetical protein 1237534..1238550 Rickettsia rickettsii str. 'Sheila Smith' 5648625 YP_001495425.1 CDS A1G_07390 NC_009882.1 1238556 1239020 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1238556..1239020) Rickettsia rickettsii str. 'Sheila Smith' 5648626 YP_001495426.1 CDS A1G_07395 NC_009882.1 1239052 1239183 R succinyl-diaminopimelate desuccinylase complement(1239052..1239183) Rickettsia rickettsii str. 'Sheila Smith' 5648627 YP_001495427.1 CDS A1G_07400 NC_009882.1 1239220 1240365 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1239220..1240365) Rickettsia rickettsii str. 'Sheila Smith' 5648628 YP_001495428.1 CDS A1G_07405 NC_009882.1 1240369 1240623 R COG0732 Restriction endonuclease S subunits; hypothetical protein complement(1240369..1240623) Rickettsia rickettsii str. 'Sheila Smith' 5647652 YP_001495429.1 CDS A1G_07410 NC_009882.1 1241123 1241293 R hypothetical protein complement(1241123..1241293) Rickettsia rickettsii str. 'Sheila Smith' 5647653 YP_001495430.1 CDS A1G_07415 NC_009882.1 1241363 1241821 R COG0286 Type I restriction-modification system methyltransferase subunit; hypothetical protein complement(1241363..1241821) Rickettsia rickettsii str. 'Sheila Smith' 5647654 YP_001495431.1 CDS A1G_07420 NC_009882.1 1242535 1242714 R Type I restriction-modification system methyltransferase subunit complement(1242535..1242714) Rickettsia rickettsii str. 'Sheila Smith' 5647655 YP_001495432.1 CDS A1G_07425 NC_009882.1 1242829 1242990 R Type I restriction-modification system methyltransferase subunit complement(1242829..1242990) Rickettsia rickettsii str. 'Sheila Smith' 5647656 YP_001495433.1 CDS A1G_07430 NC_009882.1 1243105 1243242 D hypothetical protein 1243105..1243242 Rickettsia rickettsii str. 'Sheila Smith' 5647657 YP_001495434.1 CDS A1G_07435 NC_009882.1 1243160 1243960 D COG3004 Na+/H+ antiporter; Na+/H+ antiporter NhaA 1243160..1243960 Rickettsia rickettsii str. 'Sheila Smith' 5647658 YP_001495435.1 CDS A1G_07440 NC_009882.1 1243983 1244066 D hypothetical protein 1243983..1244066 Rickettsia rickettsii str. 'Sheila Smith' 5647659 YP_001495436.1 CDS A1G_07445 NC_009882.1 1244077 1244592 R COG1434 Uncharacterized conserved protein; hypothetical protein complement(1244077..1244592) Rickettsia rickettsii str. 'Sheila Smith' 5647660 YP_001495437.1 CDS lipB NC_009882.1 1244589 1245218 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1244589..1245218) Rickettsia rickettsii str. 'Sheila Smith' 5647661 YP_001495438.1 CDS A1G_07455 NC_009882.1 1245215 1245958 R COG3023 Negative regulator of beta-lactamase expression; hypothetical protein complement(1245215..1245958) Rickettsia rickettsii str. 'Sheila Smith' 5647662 YP_001495439.1 CDS rpsP NC_009882.1 1246451 1246786 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1246451..1246786) Rickettsia rickettsii str. 'Sheila Smith' 5648761 YP_001495440.1 CDS rpmG NC_009882.1 1246803 1246973 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1246803..1246973) Rickettsia rickettsii str. 'Sheila Smith' 5648762 YP_001495441.1 CDS mutL NC_009882.1 1247194 1249026 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1247194..1249026) Rickettsia rickettsii str. 'Sheila Smith' 5648763 YP_001495442.1 CDS A1G_07475 NC_009882.1 1249034 1249186 R hypothetical protein complement(1249034..1249186) Rickettsia rickettsii str. 'Sheila Smith' 5648764 YP_001495443.1 CDS A1G_07480 NC_009882.1 1250262 1250714 D hypothetical protein 1250262..1250714 Rickettsia rickettsii str. 'Sheila Smith' 5648765 YP_001495444.1 CDS A1G_07485 NC_009882.1 1250906 1251361 R COG0457 FOG: TPR repeat; hypothetical protein complement(1250906..1251361) Rickettsia rickettsii str. 'Sheila Smith' 5648766 YP_001495445.1 CDS A1G_07490 NC_009882.1 1251498 1252772 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 1251498..1252772 Rickettsia rickettsii str. 'Sheila Smith' 5648767 YP_001495446.1 CDS A1G_07495 NC_009882.1 1252756 1253595 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1252756..1253595 Rickettsia rickettsii str. 'Sheila Smith' 5648768 YP_001495447.1 CDS A1G_07510 NC_009882.1 1254829 1255266 R COG1981 Predicted membrane protein; putative integral membrane protein complement(1254829..1255266) Rickettsia rickettsii str. 'Sheila Smith' 5648769 YP_001495448.1 CDS hemH NC_009882.1 1255278 1256318 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1255278..1256318) Rickettsia rickettsii str. 'Sheila Smith' 5648523 YP_001495449.1 CDS hemE NC_009882.1 1256275 1257315 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1256275..1257315) Rickettsia rickettsii str. 'Sheila Smith' 5648524 A1G_t07527 tRNA A1G_t07527 NC_009882.1 12465 12540 R tRNA-Phe complement(12465..12540) Rickettsia rickettsii str. 'Sheila Smith' 5648488 A1G_t07529 tRNA A1G_t07529 NC_009882.1 25907 25981 D tRNA-Glu 25907..25981 Rickettsia rickettsii str. 'Sheila Smith' 5647650 A1G_t07531 tRNA A1G_t07531 NC_009882.1 105984 106058 D tRNA-Thr 105984..106058 Rickettsia rickettsii str. 'Sheila Smith' 5647467 A1G_t07533 tRNA A1G_t07533 NC_009882.1 132345 132421 D tRNA-Met 132345..132421 Rickettsia rickettsii str. 'Sheila Smith' 5647436 A1G_t07535 tRNA A1G_t07535 NC_009882.1 176876 176951 D tRNA-Trp 176876..176951 Rickettsia rickettsii str. 'Sheila Smith' 5647894 A1G_t07537 tRNA A1G_t07537 NC_009882.1 212299 212374 R tRNA-Thr complement(212299..212374) Rickettsia rickettsii str. 'Sheila Smith' 5648246 A1G_t07539 tRNA A1G_t07539 NC_009882.1 323597 323673 D tRNA-Met 323597..323673 Rickettsia rickettsii str. 'Sheila Smith' 5647799 A1G_t07541 tRNA A1G_t07541 NC_009882.1 372475 372549 D tRNA-Asn 372475..372549 Rickettsia rickettsii str. 'Sheila Smith' 5647753 A1G_t07543 tRNA A1G_t07543 NC_009882.1 487606 487680 D tRNA-Cys 487606..487680 Rickettsia rickettsii str. 'Sheila Smith' 5648305 A1G_t07545 tRNA A1G_t07545 NC_009882.1 519129 519204 D tRNA-Lys 519129..519204 Rickettsia rickettsii str. 'Sheila Smith' 5647929 A1G_t07547 tRNA A1G_t07547 NC_009882.1 519219 519295 D tRNA-Ile 519219..519295 Rickettsia rickettsii str. 'Sheila Smith' 5647930 A1G_t07549 tRNA A1G_t07549 NC_009882.1 622270 622346 R tRNA-Asp complement(622270..622346) Rickettsia rickettsii str. 'Sheila Smith' 5647526 A1G_t07551 tRNA A1G_t07551 NC_009882.1 689141 689230 R tRNA-Ser complement(689141..689230) Rickettsia rickettsii str. 'Sheila Smith' 5648287 A1G_t07553 tRNA A1G_t07553 NC_009882.1 703715 703791 D tRNA-Arg 703715..703791 Rickettsia rickettsii str. 'Sheila Smith' 5648140 A1G_t07555 tRNA A1G_t07555 NC_009882.1 703857 703931 R tRNA-Gln complement(703857..703931) Rickettsia rickettsii str. 'Sheila Smith' 5648432 A1G_t07557 tRNA A1G_t07557 NC_009882.1 703963 704037 R tRNA-Gln complement(703963..704037) Rickettsia rickettsii str. 'Sheila Smith' 5648433 A1G_t07559 tRNA A1G_t07559 NC_009882.1 719618 719693 R tRNA-Ala complement(719618..719693) Rickettsia rickettsii str. 'Sheila Smith' 5647716 A1G_t07561 tRNA A1G_t07561 NC_009882.1 723876 723952 D tRNA-Val 723876..723952 Rickettsia rickettsii str. 'Sheila Smith' 5647887 A1G_t07563 tRNA A1G_t07563 NC_009882.1 747826 747913 D tRNA-Ser 747826..747913 Rickettsia rickettsii str. 'Sheila Smith' 5647498 A1G_t07565 tRNA A1G_t07565 NC_009882.1 787490 787566 D tRNA-Arg 787490..787566 Rickettsia rickettsii str. 'Sheila Smith' 5647544 A1G_t07567 tRNA A1G_t07567 NC_009882.1 815032 815106 R tRNA-Ala complement(815032..815106) Rickettsia rickettsii str. 'Sheila Smith' 5648312 A1G_t07569 tRNA A1G_t07569 NC_009882.1 826814 826900 D tRNA-Leu 826814..826900 Rickettsia rickettsii str. 'Sheila Smith' 5648096 A1G_t07571 tRNA A1G_t07571 NC_009882.1 831433 831507 D tRNA-Gly 831433..831507 Rickettsia rickettsii str. 'Sheila Smith' 5648600 A1G_t07573 tRNA A1G_t07573 NC_009882.1 917470 917545 R tRNA-Val complement(917470..917545) Rickettsia rickettsii str. 'Sheila Smith' 5648279 A1G_t07575 tRNA A1G_t07575 NC_009882.1 932921 932994 R tRNA-Gly complement(932921..932994) Rickettsia rickettsii str. 'Sheila Smith' 5647956 A1G_t07577 tRNA A1G_t07577 NC_009882.1 933130 933215 R tRNA-Tyr complement(933130..933215) Rickettsia rickettsii str. 'Sheila Smith' 5647957 A1G_t07579 tRNA A1G_t07579 NC_009882.1 944567 944652 D tRNA-Leu 944567..944652 Rickettsia rickettsii str. 'Sheila Smith' 5648553 A1G_t07581 tRNA A1G_t07581 NC_009882.1 988013 988089 D tRNA-His 988013..988089 Rickettsia rickettsii str. 'Sheila Smith' 5647621 A1G_t07583 tRNA A1G_t07583 NC_009882.1 1035725 1035816 D tRNA-Ser 1035725..1035816 Rickettsia rickettsii str. 'Sheila Smith' 5648196 A1G_t07585 tRNA A1G_t07585 NC_009882.1 1086109 1086185 R tRNA-Met complement(1086109..1086185) Rickettsia rickettsii str. 'Sheila Smith' 5648507 A1G_t07587 tRNA A1G_t07587 NC_009882.1 1157282 1157358 D tRNA-Pro 1157282..1157358 Rickettsia rickettsii str. 'Sheila Smith' 5647879 A1G_t07589 tRNA A1G_t07589 NC_009882.1 1193995 1194071 R tRNA-Arg complement(1193995..1194071) Rickettsia rickettsii str. 'Sheila Smith' 5648041 A1G_t07593 tRNA A1G_t07593 NC_009882.1 1246198 1246272 R tRNA-Thr complement(1246198..1246272) Rickettsia rickettsii str. 'Sheila Smith' 5648760 A1G_r01 rRNA A1G_r01 NC_009882.1 286079 288859 D 23S ribosomal RNA 286079..288859 Rickettsia rickettsii str. 'Sheila Smith' 5696509 A1G_r07595 rRNA A1G_r07595 NC_009882.1 289109 289227 D 5S ribosomal RNA 289109..289227 Rickettsia rickettsii str. 'Sheila Smith' 5647856 A1G_r07597 rRNA A1G_r07597 NC_009882.1 876489 877996 R 16S ribosomal RNA complement(876489..877996) Rickettsia rickettsii str. 'Sheila Smith' 5648535