-- dump date 20120504_160830 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_642794.1 108802857 4116151 2..1354 1 NC_008148.1 KEGG: chy:CHY_2710 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA-like Chromosomal replication initiator, DnaA; SMART: ATPase; chromosomal replication initiator protein DnaA 1354 4116151 Rxyl_0001 Rubrobacter xylanophilus DSM 9941 chromosomal replication initiator protein DnaA YP_642794.1 2 D 266117 CDS YP_642795.1 108802858 4116152 1853..2980 1 NC_008148.1 KEGG: chy:CHY_2709 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 2980 4116152 Rxyl_0002 Rubrobacter xylanophilus DSM 9941 DNA polymerase III subunit beta YP_642795.1 1853 D 266117 CDS YP_642796.1 108802859 4115662 2980..3174 1 NC_008148.1 PFAM: RNA-binding S4; KEGG: gme:Gmet_0098 RNA-binding S4; RNA-binding S4 3174 4115662 Rxyl_0003 Rubrobacter xylanophilus DSM 9941 RNA-binding S4 YP_642796.1 2980 D 266117 CDS YP_642797.1 108802860 4115663 3171..4295 1 NC_008148.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC protein-like; KEGG: oih:OB0004 DNA repair and genetic recombination; DNA replication and repair protein RecF 4295 4115663 Rxyl_0004 Rubrobacter xylanophilus DSM 9941 DNA replication and repair protein RecF YP_642797.1 3171 D 266117 CDS YP_642798.1 108802861 4115664 4458..6392 1 NC_008148.1 KEGG: gka:GK0005 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B-like ATP-binding region, ATPase-like TOPRIM DNA topoisomerase, type IIA, subunit B, region 2; SMART: DNA topoisomerase, type IIA, subunit B or-like; DNA gyrase subunit B 6392 4115664 Rxyl_0005 Rubrobacter xylanophilus DSM 9941 DNA gyrase subunit B YP_642798.1 4458 D 266117 CDS YP_642799.1 108802862 4115665 6385..8943 1 NC_008148.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A DNA gyrase C-terminal repeat, beta-propeller; KEGG: chy:CHY_2704 DNA gyrase, A subunit; DNA gyrase subunit A 8943 4115665 Rxyl_0006 Rubrobacter xylanophilus DSM 9941 DNA gyrase subunit A YP_642799.1 6385 D 266117 CDS YP_642800.1 108802863 4115666 9127..10590 1 NC_008148.1 PFAM: protein of unknown function DUF88; KEGG: ade:Adeh_2817 protein of unknown function DUF88; hypothetical protein 10590 4115666 Rxyl_0007 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642800.1 9127 D 266117 CDS YP_642801.1 108802864 4115667 complement(10572..10850) 1 NC_008148.1 hypothetical protein 10850 4115667 Rxyl_0008 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642801.1 10572 R 266117 CDS YP_642802.1 108802865 4115668 10952..11329 1 NC_008148.1 hypothetical protein 11329 4115668 Rxyl_0009 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642802.1 10952 D 266117 CDS YP_642803.1 108802866 4115669 11928..12626 1 NC_008148.1 KEGG: sco:SCO5108 integral membrane protein; integral membrane protein 12626 4115669 Rxyl_0010 Rubrobacter xylanophilus DSM 9941 integral membrane protein YP_642803.1 11928 D 266117 CDS YP_642804.1 108802867 4115670 12630..14399 1 NC_008148.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 14399 sdhA 4115670 sdhA Rubrobacter xylanophilus DSM 9941 succinate dehydrogenase flavoprotein subunit YP_642804.1 12630 D 266117 CDS YP_642805.1 108802868 4115671 14396..15214 1 NC_008148.1 catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source; fumarate reductase iron-sulfur subunit 15214 4115671 Rxyl_0012 Rubrobacter xylanophilus DSM 9941 fumarate reductase iron-sulfur subunit YP_642805.1 14396 D 266117 CDS YP_642806.1 108802869 4115672 15373..15873 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: sth:STH2026 hypothetical protein; NUDIX hydrolase 15873 4115672 Rxyl_0013 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_642806.1 15373 D 266117 CDS YP_642807.1 108802870 4115673 complement(15883..16452) 1 NC_008148.1 PFAM: flavoprotein; KEGG: ttj:TTHA1560 DNA/pantothenate metabolism flavoprotein; phosphopantothenoylcysteine decarboxylase 16452 4115673 Rxyl_0014 Rubrobacter xylanophilus DSM 9941 phosphopantothenoylcysteine decarboxylase YP_642807.1 15883 R 266117 CDS YP_642808.1 108802871 4115674 complement(16487..16729) 1 NC_008148.1 PFAM: RDD; KEGG: sth:STH460 hypothetical protein; RDD domain-containing protein 16729 4115674 Rxyl_0015 Rubrobacter xylanophilus DSM 9941 RDD domain-containing protein YP_642808.1 16487 R 266117 CDS YP_642809.1 108802872 4115675 17060..17842 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Male sterility-like; KEGG: nmu:Nmul_A1489 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 17842 4115675 Rxyl_0016 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_642809.1 17060 D 266117 CDS YP_642810.1 108802873 4115676 17851..18471 1 NC_008148.1 hypothetical protein 18471 4115676 Rxyl_0017 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642810.1 17851 D 266117 CDS YP_642811.1 108802874 4115677 complement(18428..18799) 1 NC_008148.1 hypothetical protein 18799 4115677 Rxyl_0018 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642811.1 18428 R 266117 CDS YP_642812.1 108802875 4115678 complement(18805..21246) 1 NC_008148.1 PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: pfu:PF1405 cleavage and polyadenylation specifity factor protein; beta-lactamase-like protein 21246 4115678 Rxyl_0019 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_642812.1 18805 R 266117 CDS YP_642813.1 108802876 4115679 21291..21647 1 NC_008148.1 hypothetical protein 21647 4115679 Rxyl_0020 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642813.1 21291 D 266117 CDS YP_642814.1 108802877 4115680 complement(21654..23654) 1 NC_008148.1 PFAM: protein kinase PASTA; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: tte:TTE1500 serine/threonine protein kinase; serine/threonine protein kinase 23654 4115680 Rxyl_0021 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_642814.1 21654 R 266117 CDS YP_642815.1 108802878 4115681 complement(23672..25186) 1 NC_008148.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: tte:TTE1967 cell division protein FtsI/penicillin-binding protein 2; peptidoglycan glycosyltransferase 25186 4115681 Rxyl_0022 Rubrobacter xylanophilus DSM 9941 peptidoglycan glycosyltransferase YP_642815.1 23672 R 266117 CDS YP_642816.1 108802879 4117848 complement(25183..26472) 1 NC_008148.1 PFAM: cell cycle protein; KEGG: mbo:Mb0017c probable cell division protein RodA; cell cycle protein 26472 4117848 Rxyl_0023 Rubrobacter xylanophilus DSM 9941 cell cycle protein YP_642816.1 25183 R 266117 CDS YP_642817.1 108802880 4117849 complement(26479..27624) 1 NC_008148.1 PFAM: protein phosphatase 2C-like; KEGG: ade:Adeh_3691 serine/threonine phosphatase; protein serine/threonine phosphatase-like protein 27624 4117849 Rxyl_0024 Rubrobacter xylanophilus DSM 9941 protein serine/threonine phosphatase-like protein YP_642817.1 26479 R 266117 CDS YP_642818.1 108802881 4117850 complement(27627..28094) 1 NC_008148.1 PFAM: Forkhead-associated; KEGG: fra:Francci3_4431 FHA domain containing protein; FHA domain-containing protein 28094 4117850 Rxyl_0025 Rubrobacter xylanophilus DSM 9941 FHA domain-containing protein YP_642818.1 27627 R 266117 CDS YP_642819.1 108802882 4117851 complement(28099..28941) 1 NC_008148.1 PFAM: Forkhead-associated; KEGG: tfu:Tfu_3060 FHA domain protein; FHA domain-containing protein 28941 4117851 Rxyl_0026 Rubrobacter xylanophilus DSM 9941 FHA domain-containing protein YP_642819.1 28099 R 266117 CDS YP_642820.1 108802883 4117852 complement(28951..30540) 1 NC_008148.1 PFAM: protein kinase; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: nfa:nfa31920 putative serine/threonine protein kinase; serine/threonine protein kinase 30540 4117852 Rxyl_0027 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_642820.1 28951 R 266117 CDS YP_642821.1 108802884 4117853 30831..31817 1 NC_008148.1 hypothetical protein 31817 4117853 Rxyl_0028 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642821.1 30831 D 266117 CDS YP_642822.1 108802885 4117854 31839..32123 1 NC_008148.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: sma:SAV6058 putative transcriptional regulator; AsnC family transcriptional regulator 32123 4117854 Rxyl_0029 Rubrobacter xylanophilus DSM 9941 AsnC family transcriptional regulator YP_642822.1 31839 D 266117 CDS YP_642823.1 108802886 4117855 complement(32128..33258) 1 NC_008148.1 ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 33258 4117855 Rxyl_0030 Rubrobacter xylanophilus DSM 9941 carboxylate-amine ligase YP_642823.1 32128 R 266117 CDS YP_642824.1 108802887 4117856 complement(33290..33895) 1 NC_008148.1 PFAM: Redoxin Thioredoxin domain; KEGG: sth:STH734 cytochrome c biogenesis protein; redoxin 33895 4117856 Rxyl_0031 Rubrobacter xylanophilus DSM 9941 redoxin YP_642824.1 33290 R 266117 CDS YP_642825.1 108802888 4117857 34015..34470 1 NC_008148.1 PFAM: DoxX; KEGG: fra:Francci3_0914 DoxX; DoxX protein 34470 4117857 Rxyl_0032 Rubrobacter xylanophilus DSM 9941 DoxX protein YP_642825.1 34015 D 266117 CDS YP_642826.1 108802889 4117858 complement(34412..35284) 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: hma:rrnAC2881 hypothetical protein; alpha/beta hydrolase fold protein domain-containing protein 35284 4117858 Rxyl_0033 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_642826.1 34412 R 266117 CDS YP_642827.1 108802890 4117859 complement(35295..37067) 1 NC_008148.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase-like DNA mismatch repair protein-like; KEGG: sth:STH1748 DNA mismatch repair protein; DNA mismatch repair protein MutL 37067 4117859 Rxyl_0034 Rubrobacter xylanophilus DSM 9941 DNA mismatch repair protein MutL YP_642827.1 35295 R 266117 CDS YP_642828.1 108802891 4117860 37137..37619 1 NC_008148.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: ava:Ava_2314 acetyl-CoA biotin carboxyl carrier; biotin carboxyl carrier protein 37619 4117860 Rxyl_0035 Rubrobacter xylanophilus DSM 9941 biotin carboxyl carrier protein YP_642828.1 37137 D 266117 CDS YP_642829.1 108802892 4117861 37623..39014 1 NC_008148.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase ATP-dependent carboxylate-amine ligase-like, ATP-grasp protein of unknown function DUF201 Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: hin:HI0972 biotin carboxylase; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha/biotin carboxylase 39014 4117861 Rxyl_0036 Rubrobacter xylanophilus DSM 9941 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha/biotin carboxylase YP_642829.1 37623 D 266117 CDS YP_642830.1 108802893 4117862 39047..39886 1 NC_008148.1 KEGG: sth:STH72 hypothetical protein; metal-dependent enzyme-like protein 39886 4117862 Rxyl_0037 Rubrobacter xylanophilus DSM 9941 metal-dependent enzyme-like protein YP_642830.1 39047 D 266117 CDS YP_642831.1 108802894 4117863 complement(39883..40782) 1 NC_008148.1 KEGG: mma:MM3004 hypothetical protein; hypothetical protein 40782 4117863 Rxyl_0038 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642831.1 39883 R 266117 CDS YP_642832.1 108802895 4117864 complement(40779..42215) 1 NC_008148.1 PFAM: protein of unknown function DUF407; KEGG: fra:Francci3_2911 enzymatic protein of unknown function; hypothetical protein 42215 4117864 Rxyl_0039 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642832.1 40779 R 266117 CDS YP_642833.1 108802896 4117865 42266..42988 1 NC_008148.1 PFAM: DnaD and phage-associated region; KEGG: ctc:CTC02142 hypothetical protein; DnaD and phage-associated region 42988 4117865 Rxyl_0040 Rubrobacter xylanophilus DSM 9941 DnaD and phage-associated region YP_642833.1 42266 D 266117 CDS YP_642834.1 108802897 4117866 43068..43793 1 NC_008148.1 PFAM: IstB-like ATP-binding protein; SMART: ATPase; KEGG: bat:BAS3827 hypothetical protein; hypothetical protein 43793 4117866 Rxyl_0041 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642834.1 43068 D 266117 CDS YP_642835.1 108802898 4117731 43790..44395 1 NC_008148.1 hypothetical protein 44395 4117731 Rxyl_0042 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642835.1 43790 D 266117 CDS YP_642836.1 108802899 4117732 44402..45193 1 NC_008148.1 PFAM: protein of unknown function DUF1624; KEGG: mma:MM1197 hypothetical protein; hypothetical protein 45193 4117732 Rxyl_0043 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642836.1 44402 D 266117 CDS YP_642837.1 108802900 4117733 45190..46065 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: mta:Moth_1254 beta-lactamase-like; beta-lactamase-like protein 46065 4117733 Rxyl_0044 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_642837.1 45190 D 266117 CDS YP_642838.1 108802901 4117734 46145..46570 1 NC_008148.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tde:TDE1677 single-strand binding protein; single-strand binding protein 46570 4117734 Rxyl_0045 Rubrobacter xylanophilus DSM 9941 single-strand binding protein YP_642838.1 46145 D 266117 CDS YP_642839.1 108802902 4117735 complement(46567..47430) 1 NC_008148.1 KEGG: sma:SAV1785 hypothetical protein; hypothetical protein 47430 4117735 Rxyl_0046 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642839.1 46567 R 266117 CDS YP_642840.1 108802903 4117736 complement(47427..48221) 1 NC_008148.1 PFAM: regulatory protein, MerR; KEGG: sma:SAV1786 putative MerR-family transcriptional regulator; MerR family transcriptional regulator 48221 4117736 Rxyl_0047 Rubrobacter xylanophilus DSM 9941 MerR family transcriptional regulator YP_642840.1 47427 R 266117 CDS YP_642841.1 108802904 4117737 48394..49491 1 NC_008148.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 49491 4117737 Rxyl_0048 Rubrobacter xylanophilus DSM 9941 transaldolase YP_642841.1 48394 D 266117 CDS YP_642842.1 108802905 4117738 49520..51400 1 NC_008148.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 51400 4117738 Rxyl_0049 Rubrobacter xylanophilus DSM 9941 transketolase YP_642842.1 49520 D 266117 CDS YP_642843.1 108802906 4117739 51418..52335 1 NC_008148.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 52335 4117739 Rxyl_0050 Rubrobacter xylanophilus DSM 9941 6-phosphogluconate dehydrogenase YP_642843.1 51418 D 266117 CDS YP_642844.1 108802907 4117740 52332..53864 1 NC_008148.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 53864 4117740 Rxyl_0051 Rubrobacter xylanophilus DSM 9941 glucose-6-phosphate 1-dehydrogenase YP_642844.1 52332 D 266117 CDS YP_642845.1 108802908 4117741 53861..54931 1 NC_008148.1 KEGG: gvi:glr3179 unknown protein; glucose-6-phosphate dehydrogenase 54931 4117741 Rxyl_0052 Rubrobacter xylanophilus DSM 9941 glucose-6-phosphate dehydrogenase YP_642845.1 53861 D 266117 CDS YP_642846.1 108802909 4117742 54928..55656 1 NC_008148.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: ade:Adeh_1440 6-phosphogluconolactonase; 6-phosphogluconolactonase 55656 4117742 Rxyl_0053 Rubrobacter xylanophilus DSM 9941 6-phosphogluconolactonase YP_642846.1 54928 D 266117 CDS YP_642847.1 108802910 4117743 55741..56289 1 NC_008148.1 hypothetical protein 56289 4117743 Rxyl_0054 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642847.1 55741 D 266117 CDS YP_642848.1 108802911 4117744 complement(56429..57478) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mlo:mll9007 hypothetical protein; NAD-dependent epimerase/dehydratase 57478 4117744 Rxyl_0055 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_642848.1 56429 R 266117 CDS YP_642849.1 108802912 4117745 57615..58604 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gsu:GSU0573 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase GroES-like protein 58604 4117745 Rxyl_0056 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_642849.1 57615 D 266117 CDS YP_642850.1 108802913 4117746 58656..59624 1 NC_008148.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; KEGG: tfu:Tfu_1428 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 59624 4117746 Rxyl_0057 Rubrobacter xylanophilus DSM 9941 magnesium and cobalt transport protein CorA YP_642850.1 58656 D 266117 CDS YP_642851.1 108802914 4117747 59615..60397 1 NC_008148.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: hma:rrnAC2235 hypothetical protein; biotin/lipoate A/B protein ligase 60397 4117747 Rxyl_0058 Rubrobacter xylanophilus DSM 9941 biotin/lipoate A/B protein ligase YP_642851.1 59615 D 266117 CDS YP_642852.1 108802915 4117748 60430..61908 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: afu:AF1005 putative ABC-2 type transport system permease protein; ABC transporter 61908 4117748 Rxyl_0059 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_642852.1 60430 D 266117 CDS YP_642853.1 108802916 4117749 61914..62852 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: gme:Gmet_0657 ABC transporter-related protein; ABC transporter-like protein 62852 4117749 Rxyl_0060 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_642853.1 61914 D 266117 CDS YP_642854.1 108802917 4117750 62882..64033 1 NC_008148.1 PFAM: protein of unknown function UPF0118; KEGG: bce:BC4385 hypothetical membrane spanning protein; hypothetical protein 64033 4117750 Rxyl_0061 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642854.1 62882 D 266117 CDS YP_642855.1 108802918 4117906 complement(64030..65340) 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 1; KEGG: gka:GK2123 ABC transporter (substrate-binding protein); extracellular solute-binding protein 65340 4117906 Rxyl_0062 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_642855.1 64030 R 266117 CDS YP_642856.1 108802919 4117907 65491..66288 1 NC_008148.1 PFAM: Abortive infection protein; KEGG: ava:Ava_C0096 hypothetical protein; abortive infection protein 66288 4117907 Rxyl_0063 Rubrobacter xylanophilus DSM 9941 abortive infection protein YP_642856.1 65491 D 266117 CDS YP_642857.1 108802920 4117908 66314..67048 1 NC_008148.1 hypothetical protein 67048 4117908 Rxyl_0064 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642857.1 66314 D 266117 CDS YP_642858.1 108802921 4117909 67084..67470 1 NC_008148.1 PFAM: regulatory protein GntR, HTH; KEGG: bha:BH1164 transcriptional regulator (GntR family); GntR family transcriptional regulator 67470 4117909 Rxyl_0065 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_642858.1 67084 D 266117 CDS YP_642859.1 108802922 4117910 67457..68383 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_1164 ABC transporter related; ABC transporter-like protein 68383 4117910 Rxyl_0066 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_642859.1 67457 D 266117 CDS YP_642860.1 108802923 4117911 complement(68373..69221) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00567 probable sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 69221 4117911 Rxyl_0067 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_642860.1 68373 R 266117 CDS YP_642861.1 108802924 4117912 complement(69223..70143) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00566 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 70143 4117912 Rxyl_0068 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_642861.1 69223 R 266117 CDS YP_642862.1 108802925 4117913 complement(70158..71456) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: ret:RHE_PF00565 putative sugar ABC transporter, substrate-binding protein; twin-arginine translocation pathway signal protein 71456 4117913 Rxyl_0069 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_642862.1 70158 R 266117 CDS YP_642863.1 108802926 4117914 complement(71453..74266) 1 NC_008148.1 PFAM: glycoside hydrolase, family 38 glycosyl hydrolases 38-like; KEGG: cpe:CPE1415 putative alpha-mannosidase; glycoside hydrolase family protein 74266 4117914 Rxyl_0070 Rubrobacter xylanophilus DSM 9941 glycoside hydrolase family protein YP_642863.1 71453 R 266117 CDS YP_642864.1 108802927 4117915 complement(74263..74601) 1 NC_008148.1 hypothetical protein 74601 4117915 Rxyl_0071 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642864.1 74263 R 266117 CDS YP_642865.1 108802928 4117916 complement(75249..76313) 1 NC_008148.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase 76313 4117916 Rxyl_0072 Rubrobacter xylanophilus DSM 9941 succinyl-diaminopimelate desuccinylase YP_642865.1 75249 R 266117 CDS YP_642866.1 108802929 4117917 complement(76310..77119) 1 NC_008148.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 77119 dapD 4117917 dapD Rubrobacter xylanophilus DSM 9941 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_642866.1 76310 R 266117 CDS YP_642867.1 108802930 4117918 complement(77177..78394) 1 NC_008148.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: ade:Adeh_3830 aminotransferase, class I and II; aminotransferase 78394 4117918 Rxyl_0074 Rubrobacter xylanophilus DSM 9941 aminotransferase YP_642867.1 77177 R 266117 CDS YP_642868.1 108802931 4117919 78454..79704 1 NC_008148.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gsu:GSU0158 diaminopimelate decarboxylase; diaminopimelate decarboxylase 79704 4117919 Rxyl_0075 Rubrobacter xylanophilus DSM 9941 diaminopimelate decarboxylase YP_642868.1 78454 D 266117 CDS YP_642869.1 108802932 4117920 79822..81174 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter 81174 4117920 Rxyl_0076 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_642869.1 79822 D 266117 CDS YP_642870.1 108802933 4117921 81175..81921 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 81921 4117921 Rxyl_0077 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_642870.1 81175 D 266117 CDS YP_642871.1 108802934 4117922 81997..82953 1 NC_008148.1 PFAM: PfkB; KEGG: bcl:ABC3352 2-keto-3-deoxygluconate kinase; PfkB protein 82953 4117922 Rxyl_0078 Rubrobacter xylanophilus DSM 9941 PfkB protein YP_642871.1 81997 D 266117 CDS YP_642872.1 108802935 4117923 82982..83638 1 NC_008148.1 KEGG: bld:BLi03826 2-keto-3-deoxygluconate-6-phosphate aldolase; RBL01576; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-keto-3-deoxy-phosphogluconate aldolase 83638 4117923 Rxyl_0079 Rubrobacter xylanophilus DSM 9941 2-keto-3-deoxy-phosphogluconate aldolase YP_642872.1 82982 D 266117 CDS YP_642873.1 108802936 4117924 83635..84480 1 NC_008148.1 Converts D-mannonate to D-mannuronate; D-mannonate oxidoreductase 84480 4117924 Rxyl_0080 Rubrobacter xylanophilus DSM 9941 D-mannonate oxidoreductase YP_642873.1 83635 D 266117 CDS YP_642874.1 108802937 4117653 84572..86173 1 NC_008148.1 PFAM: regulatory protein GntR, HTH periplasmic binding protein/LacI transcriptional regulator; KEGG: mta:Moth_2024 transcriptional regulator, LacI family; GntR family transcriptional regulator 86173 4117653 Rxyl_0081 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_642874.1 84572 D 266117 CDS YP_642875.1 108802938 4117654 complement(86181..86675) 1 NC_008148.1 PFAM: TQO small subunit DoxD; KEGG: oih:OB3081 hypothetical protein; TQO small subunit DoxD 86675 4117654 Rxyl_0082 Rubrobacter xylanophilus DSM 9941 TQO small subunit DoxD YP_642875.1 86181 R 266117 CDS YP_642876.1 108802939 4117655 86899..87915 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: nfa:pnf1600 putative copper oxidase; twin-arginine translocation pathway signal protein 87915 4117655 Rxyl_0083 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_642876.1 86899 D 266117 CDS YP_642877.1 108802940 4117656 87919..89103 1 NC_008148.1 KEGG: nfa:pnf1610 putative metal cation transporter; putative metal cation transporter 89103 4117656 Rxyl_0084 Rubrobacter xylanophilus DSM 9941 putative metal cation transporter YP_642877.1 87919 D 266117 CDS YP_642878.1 108802941 4117657 89169..89648 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Rieske [2Fe-2S] region; KEGG: fra:Francci3_0970 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 89648 4117657 Rxyl_0085 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_642878.1 89169 D 266117 CDS YP_642879.1 108802942 4117658 89704..90321 1 NC_008148.1 KEGG: ehi:42.t00003 hypothetical protein PROSITE: ARG_RICH GLU_RICH LYS_RICH PRO_RICH SER_RICH THR_RICH; hypothetical protein 90321 4117658 Rxyl_0086 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642879.1 89704 D 266117 CDS YP_642880.1 108802943 4117659 91359..91835 1 NC_008148.1 PFAM: regulatory protein, MarR; KEGG: ttj:TTHA0953 hypothetical protein; regulatory protein MarR 91835 4117659 Rxyl_0088 Rubrobacter xylanophilus DSM 9941 regulatory protein MarR YP_642880.1 91359 D 266117 CDS YP_642881.1 108802944 4117660 91874..92797 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tma:TM1028 putative ABC-2 type transport system ATP-binding protein; ABC transporter-like protein 92797 4117660 Rxyl_0089 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_642881.1 91874 D 266117 CDS YP_642882.1 108802945 4117661 92794..93615 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: bld:BLi00348 putative permease; RBL02584; ABC transporter 93615 4117661 Rxyl_0090 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_642882.1 92794 D 266117 CDS YP_642883.1 108802946 4117662 93650..94942 1 NC_008148.1 PFAM: protein of unknown function DUF815; SMART: ATPase; KEGG: mta:Moth_2317 protein of unknown function DUF815; hypothetical protein 94942 4117662 Rxyl_0091 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642883.1 93650 D 266117 CDS YP_642884.1 108802947 4117663 complement(94939..95397) 1 NC_008148.1 PFAM: response regulator receiver; KEGG: noc:Noc_1757 response regulator receiver; response regulator receiver protein 95397 4117663 Rxyl_0092 Rubrobacter xylanophilus DSM 9941 response regulator receiver protein YP_642884.1 94939 R 266117 CDS YP_642885.1 108802948 4117664 95843..98413 1 NC_008148.1 PFAM: response regulator receiver ATP-binding region, ATPase-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: sru:SRU_0095 utilizing regulatory protein TutC; multi-sensor signal transduction histidine kinase 98413 4117664 Rxyl_0093 Rubrobacter xylanophilus DSM 9941 multi-sensor signal transduction histidine kinase YP_642885.1 95843 D 266117 CDS YP_642886.1 108802949 4117665 98490..99158 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: fra:Francci3_1039 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 99158 4117665 Rxyl_0094 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_642886.1 98490 D 266117 CDS YP_642887.1 108802950 4117666 complement(99155..99943) 1 NC_008148.1 PFAM: diaminopimelate epimerase; KEGG: mta:Moth_0888 diaminopimelate epimerase; diaminopimelate epimerase 99943 4117666 Rxyl_0095 Rubrobacter xylanophilus DSM 9941 diaminopimelate epimerase YP_642887.1 99155 R 266117 CDS YP_642888.1 108802951 4117667 complement(100363..101145) 1 NC_008148.1 PFAM: dihydrodipicolinate reductase; KEGG: hch:HCH_01226 dihydrodipicolinate reductase; dihydrodipicolinate reductase 101145 4117667 Rxyl_0096 Rubrobacter xylanophilus DSM 9941 dihydrodipicolinate reductase YP_642888.1 100363 R 266117 CDS YP_642889.1 108802952 4117668 complement(101142..102035) 1 NC_008148.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 102035 4117668 Rxyl_0097 Rubrobacter xylanophilus DSM 9941 dihydrodipicolinate synthase YP_642889.1 101142 R 266117 CDS YP_642890.1 108802953 4117669 complement(102028..103296) 1 NC_008148.1 KEGG: deh:cbdb_A1731 aspartate kinase, monofunctional class; TIGRFAM: aspartate kinase aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase amino acid-binding ACT; aspartate kinase 103296 4117669 Rxyl_0098 Rubrobacter xylanophilus DSM 9941 aspartate kinase YP_642890.1 102028 R 266117 CDS YP_642891.1 108802954 4117670 complement(103337..103846) 1 NC_008148.1 KEGG: sco:SCO6430 hypothetical protein; hypothetical protein 103846 4117670 Rxyl_0099 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642891.1 103337 R 266117 CDS YP_642892.1 108802955 4117671 104425..105876 1 NC_008148.1 KEGG: cef:CE1659 hypothetical protein; hypothetical protein 105876 4117671 Rxyl_0100 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642892.1 104425 D 266117 CDS YP_642893.1 108802956 4117672 complement(105879..106856) 1 NC_008148.1 PFAM: Abortive infection protein; KEGG: hma:rrnAC2913 hypothetical protein; abortive infection protein 106856 4117672 Rxyl_0101 Rubrobacter xylanophilus DSM 9941 abortive infection protein YP_642893.1 105879 R 266117 CDS YP_642894.1 108802957 4117770 107722..109641 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: gsu:GSU2388 sensory box histidine kinase; PAS/PAC sensor signal transduction histidine kinase 109641 4117770 Rxyl_0103 Rubrobacter xylanophilus DSM 9941 PAS/PAC sensor signal transduction histidine kinase YP_642894.1 107722 D 266117 CDS YP_642895.1 108802958 4117771 109681..110130 1 NC_008148.1 PFAM: UspA; KEGG: bte:BTH_II1567 universal stress protein family; hypothetical protein 110130 4117771 Rxyl_0104 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642895.1 109681 D 266117 CDS YP_642896.1 108802959 4117772 110258..111226 1 NC_008148.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 111226 4117772 Rxyl_0105 Rubrobacter xylanophilus DSM 9941 quinolinate synthetase YP_642896.1 110258 D 266117 CDS YP_642897.1 108802960 4117773 111226..112101 1 NC_008148.1 KEGG: gsu:GSU1936 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 112101 4117773 Rxyl_0106 Rubrobacter xylanophilus DSM 9941 nicotinate-nucleotide pyrophosphorylase YP_642897.1 111226 D 266117 CDS YP_642898.1 108802961 4117774 112095..113561 1 NC_008148.1 KEGG: ade:Adeh_3566 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like HI0933-like protein FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase 113561 4117774 Rxyl_0107 Rubrobacter xylanophilus DSM 9941 L-aspartate oxidase YP_642898.1 112095 D 266117 CDS YP_642899.1 108802962 4117775 113558..113785 1 NC_008148.1 hypothetical protein 113785 4117775 Rxyl_0108 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642899.1 113558 D 266117 CDS YP_642900.1 108802963 4117776 113800..114957 1 NC_008148.1 PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Pyridoxal-dependent decarboxylase; KEGG: ade:Adeh_0592 aminotransferase, class V; class V aminotransferase 114957 4117776 Rxyl_0109 Rubrobacter xylanophilus DSM 9941 class V aminotransferase YP_642900.1 113800 D 266117 CDS YP_642901.1 108802964 4117777 complement(114954..115706) 1 NC_008148.1 PFAM: high-affinity nickel-transporter; KEGG: rpa:RPA1656 possible urease accessory protein; high-affinity nickel-transporter 115706 4117777 Rxyl_0110 Rubrobacter xylanophilus DSM 9941 high-affinity nickel-transporter YP_642901.1 114954 R 266117 CDS YP_642902.1 108802965 4117778 116061..116546 1 NC_008148.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: sso:SSO2433 Carbon monoxide dehydrogenase, small chain; (2Fe-2S)-binding protein 116546 4117778 Rxyl_0111 Rubrobacter xylanophilus DSM 9941 (2Fe-2S)-binding protein YP_642902.1 116061 D 266117 CDS YP_642903.1 108802966 4117779 116563..119007 1 NC_008148.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ape:APE2216 putative carbon monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 119007 4117779 Rxyl_0112 Rubrobacter xylanophilus DSM 9941 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_642903.1 116563 D 266117 CDS YP_642904.1 108802967 4117780 119004..119855 1 NC_008148.1 PFAM: molybdopterin dehydrogenase, FAD-binding CO dehydrogenase flavoprotein-like; KEGG: ape:APE2219 292aa long hypothetical nicotine dehydrogenase chain A; molybdopterin dehydrogenase protein 119855 4117780 Rxyl_0113 Rubrobacter xylanophilus DSM 9941 molybdopterin dehydrogenase protein YP_642904.1 119004 D 266117 CDS YP_642905.1 108802968 4117781 119852..120796 1 NC_008148.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: rru:Rru_A0968 ATPase associated with various cellular activities, AAA_5; ATPase 120796 4117781 Rxyl_0114 Rubrobacter xylanophilus DSM 9941 ATPase YP_642905.1 119852 D 266117 CDS YP_642906.1 108802969 4117782 120789..121931 1 NC_008148.1 PFAM: VWA containing CoxE-like; SMART: von Willebrand factor, type A; KEGG: mlo:mlr0089 hypothetical protein; VWA containing CoxE-like protein 121931 4117782 Rxyl_0115 Rubrobacter xylanophilus DSM 9941 VWA containing CoxE-like protein YP_642906.1 120789 D 266117 CDS YP_642907.1 108802970 4117783 121996..122310 1 NC_008148.1 PFAM: protein of unknown function DUF182; KEGG: ade:Adeh_3104 protein of unknown function DUF182; sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis 122310 4117783 Rxyl_0116 Rubrobacter xylanophilus DSM 9941 sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis YP_642907.1 121996 D 266117 CDS YP_642908.1 108802971 4117784 122313..123113 1 NC_008148.1 PFAM: protein of unknown function DUF182; KEGG: sma:SAV7506 putative xanthine dehydrogenase; sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis 123113 4117784 Rxyl_0117 Rubrobacter xylanophilus DSM 9941 sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis YP_642908.1 122313 D 266117 CDS YP_642909.1 108802972 4117785 123110..123733 1 NC_008148.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: sco:SCO6244 hypothetical protein; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 123733 4117785 Rxyl_0118 Rubrobacter xylanophilus DSM 9941 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_642909.1 123110 D 266117 CDS YP_642910.1 108802973 4117786 123730..124173 1 NC_008148.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mtc:MT0384.1 hypothetical protein; carbon monoxide dehydrogenase subunit G 124173 4117786 Rxyl_0119 Rubrobacter xylanophilus DSM 9941 carbon monoxide dehydrogenase subunit G YP_642910.1 123730 D 266117 CDS YP_642911.1 108802974 4117787 124189..124827 1 NC_008148.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mtc:MT0384.1 hypothetical protein; carbon monoxide dehydrogenase subunit G 124827 4117787 Rxyl_0120 Rubrobacter xylanophilus DSM 9941 carbon monoxide dehydrogenase subunit G YP_642911.1 124189 D 266117 CDS YP_642912.1 108802975 4117788 complement(124829..125464) 1 NC_008148.1 PFAM: protein of unknown function DUF305; KEGG: ana:all7633 hypothetical protein; hypothetical protein 125464 4117788 Rxyl_0121 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642912.1 124829 R 266117 CDS YP_642913.1 108802976 4117692 complement(125905..126576) 1 NC_008148.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: tfu:Tfu_0735 ubiquinone/menaquinone biosynthesis methyltransferase; phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase 126576 4117692 Rxyl_0122 Rubrobacter xylanophilus DSM 9941 phosphatidylethanolamine N-methyltransferase/phosphatidyl-N-methylethanolamine N-methyltransferase YP_642913.1 125905 R 266117 CDS YP_642914.1 108802977 4117693 complement(126573..127988) 1 NC_008148.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: cte:CT0776 NADH dehydrogenase I subunit 2; NADH dehydrogenase (quinone) 127988 4117693 Rxyl_0123 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (quinone) YP_642914.1 126573 R 266117 CDS YP_642915.1 108802978 4117694 complement(127985..129448) 1 NC_008148.1 KEGG: gsu:GSU3430 NADH dehydrogenase I, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 129448 4117694 Rxyl_0124 Rubrobacter xylanophilus DSM 9941 proton-translocating NADH-quinone oxidoreductase subunit M YP_642915.1 127985 R 266117 CDS YP_642916.1 108802979 4117695 complement(129465..131288) 1 NC_008148.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: deh:cbdb_A883 proton-translocating NADH-quinone oxidoreductase, L subunit; NADH dehydrogenase (quinone) 131288 4117695 Rxyl_0125 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (quinone) YP_642916.1 129465 R 266117 CDS YP_642917.1 108802980 4117696 complement(131285..131590) 1 NC_008148.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_0477 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 131590 4117696 Rxyl_0126 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone oxidoreductase subunit 4L YP_642917.1 131285 R 266117 CDS YP_642918.1 108802981 4117697 complement(131590..132096) 1 NC_008148.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: reu:Reut_A0970 NADH dehydrogenase (quinone); NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 132096 4117697 Rxyl_0127 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 YP_642918.1 131590 R 266117 CDS YP_642919.1 108802982 4117698 complement(132093..133004) 1 NC_008148.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pca:Pcar_0210 NADH dehydrogenase I, H subunit; respiratory-chain NADH dehydrogenase subunit 1 133004 4117698 Rxyl_0128 Rubrobacter xylanophilus DSM 9941 respiratory-chain NADH dehydrogenase subunit 1 YP_642919.1 132093 R 266117 CDS YP_642920.1 108802983 4117699 complement(132986..134608) 1 NC_008148.1 KEGG: mhu:Mhun_1745 NADH-ubiquinone oxidoreductase, chain 49kDa; Ni Fe-hydrogenase III large subunit-like protein 134608 4117699 Rxyl_0129 Rubrobacter xylanophilus DSM 9941 Ni Fe-hydrogenase III large subunit-like protein YP_642920.1 132986 R 266117 CDS YP_642921.1 108802984 4117700 complement(134605..134967) 1 NC_008148.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: mta:Moth_0977 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 134967 4117700 Rxyl_0130 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 YP_642921.1 134605 R 266117 CDS YP_642922.1 108802985 4117701 complement(134964..135176) 1 NC_008148.1 PFAM: Heavy metal transport/detoxification protein; KEGG: gka:GK0903 mercuric ion-binding protein; heavy metal transport/detoxification protein 135176 4117701 Rxyl_0131 Rubrobacter xylanophilus DSM 9941 heavy metal transport/detoxification protein YP_642922.1 134964 R 266117 CDS YP_642923.1 108802986 4117702 complement(135187..135513) 1 NC_008148.1 PFAM: protein of unknown function DUF156; KEGG: cef:CE0406 hypothetical protein; hypothetical protein 135513 4117702 Rxyl_0132 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642923.1 135187 R 266117 CDS YP_642924.1 108802987 4117703 complement(135515..137770) 1 NC_008148.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase, P type cation/copper-transporter Heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: ana:alr7635 cation-transporting ATPase; P type cation/copper-transporter ATPase 137770 4117703 Rxyl_0133 Rubrobacter xylanophilus DSM 9941 P type cation/copper-transporter ATPase YP_642924.1 135515 R 266117 CDS YP_642925.1 108802988 4117704 complement(138048..138983) 1 NC_008148.1 PFAM: metallophosphoesterase; KEGG: noc:Noc_1260 metallophosphoesterase; metallophosphoesterase 138983 4117704 Rxyl_0134 Rubrobacter xylanophilus DSM 9941 metallophosphoesterase YP_642925.1 138048 R 266117 CDS YP_642926.1 108802989 4117705 complement(139026..139823) 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHA1738 probable hydrolase; alpha/beta hydrolase fold protein domain-containing protein 139823 4117705 Rxyl_0135 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_642926.1 139026 R 266117 CDS YP_642927.1 108802990 4117706 complement(139908..141398) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH aminotransferase, class I and II; KEGG: mag:amb1376 transcriptional regulator; GntR family transcriptional regulator 141398 4117706 Rxyl_0136 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_642927.1 139908 R 266117 CDS YP_642928.1 108802991 4117707 141696..142700 1 NC_008148.1 PFAM: sugar isomerase (SIS); KEGG: pfu:PF0157 glucosamine-fructose-6-phosphate aminotransferase (isomerizing); glutamine-fructose-6-phosphate transaminase 142700 4117707 Rxyl_0137 Rubrobacter xylanophilus DSM 9941 glutamine-fructose-6-phosphate transaminase YP_642928.1 141696 D 266117 CDS YP_642929.1 108802992 4117708 142697..143575 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tte:TTE0639 permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 143575 4117708 Rxyl_0138 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642929.1 142697 D 266117 CDS YP_642930.1 108802993 4117709 complement(143618..144934) 1 NC_008148.1 KEGG: ade:Adeh_0244 LigA; LigA 144934 4117709 Rxyl_0139 Rubrobacter xylanophilus DSM 9941 LigA YP_642930.1 143618 R 266117 CDS YP_642931.1 108802994 4117710 145174..145704 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: mpa:MAP0794 hypothetical protein; TetR family transcriptional regulator 145704 4117710 Rxyl_0140 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_642931.1 145174 D 266117 CDS YP_642932.1 108802995 4117711 146058..146702 1 NC_008148.1 PFAM: isochorismatase hydrolase; KEGG: ape:APE2350 isochorismatase; isochorismatase hydrolase 146702 4117711 Rxyl_0141 Rubrobacter xylanophilus DSM 9941 isochorismatase hydrolase YP_642932.1 146058 D 266117 CDS YP_642933.1 108802996 4117789 146784..147224 1 NC_008148.1 PFAM: OsmC-like protein; KEGG: sco:SCO6531 putative ATP/GTP binding protein; OsmC-like protein 147224 4117789 Rxyl_0142 Rubrobacter xylanophilus DSM 9941 OsmC-like protein YP_642933.1 146784 D 266117 CDS YP_642934.1 108802997 4117790 complement(147289..148863) 1 NC_008148.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: gka:GK0928 sodium:solute symporter; SSS family solute/sodium (Na+) symporter 148863 4117790 Rxyl_0143 Rubrobacter xylanophilus DSM 9941 SSS family solute/sodium (Na+) symporter YP_642934.1 147289 R 266117 CDS YP_642935.1 108802998 4117791 complement(148866..149180) 1 NC_008148.1 PFAM: protein of unknown function DUF485; KEGG: oih:OB2443 hypothetical protein; hypothetical protein 149180 4117791 Rxyl_0144 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642935.1 148866 R 266117 CDS YP_642936.1 108802999 4117792 complement(149450..150319) 1 NC_008148.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: sco:SCO6558 putative protein associated with oxidoreductase activity; formate dehydrogenase family accessory protein FdhD 150319 4117792 Rxyl_0145 Rubrobacter xylanophilus DSM 9941 formate dehydrogenase family accessory protein FdhD YP_642936.1 149450 R 266117 CDS YP_642937.1 108803000 4117793 complement(150323..152593) 1 NC_008148.1 TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; KEGG: ttj:TTHB197 probable formate dehydrogenase; oxidoreductase alpha (molybdopterin) subunit 152593 4117793 Rxyl_0146 Rubrobacter xylanophilus DSM 9941 oxidoreductase alpha (molybdopterin) subunit YP_642937.1 150323 R 266117 CDS YP_642938.1 108803001 4117794 complement(152969..154141) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sco:SCO4055 alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein 154141 4117794 Rxyl_0147 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_642938.1 152969 R 266117 CDS YP_642939.1 108803002 4117795 complement(154381..154773) 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: nwi:Nwi_1500 cupin region; cupin 2 barrel domain-containing protein 154773 4117795 Rxyl_0148 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_642939.1 154381 R 266117 CDS YP_642940.1 108803003 4117796 complement(154840..156525) 1 NC_008148.1 KEGG: gvi:glr3825 hypothetical protein; hypothetical protein 156525 4117796 Rxyl_0149 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642940.1 154840 R 266117 CDS YP_642941.1 108803004 4117797 complement(156568..158163) 1 NC_008148.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter Citrate transporter; KEGG: oih:OB2540 sodium-dependent transporter; anion transporter 158163 4117797 Rxyl_0150 Rubrobacter xylanophilus DSM 9941 anion transporter YP_642941.1 156568 R 266117 CDS YP_642942.1 108803005 4117798 complement(158244..159074) 1 NC_008148.1 hypothetical protein 159074 4117798 Rxyl_0151 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642942.1 158244 R 266117 CDS YP_642943.1 108803006 4117799 159172..159987 1 NC_008148.1 TIGRFAM: cell envelope-related function transcriptional attenuator common domain; PFAM: cell envelope-related transcriptional attenuator; KEGG: sth:STH1893 transcriptional regulator; cell envelope-related transcriptional attenuator 159987 4117799 Rxyl_0152 Rubrobacter xylanophilus DSM 9941 cell envelope-related transcriptional attenuator YP_642943.1 159172 D 266117 CDS YP_642944.1 108803007 4117800 complement(159997..160665) 1 NC_008148.1 KEGG: tte:TTE0745 hypothetical protein; hypothetical protein 160665 4117800 Rxyl_0153 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642944.1 159997 R 266117 CDS YP_642945.1 108803008 4117801 161064..162134 1 NC_008148.1 PFAM: basic membrane lipoprotein; KEGG: sth:STH1236 sugar ABC transporter substrate-binding protein; basic membrane lipoprotein 162134 4117801 Rxyl_0155 Rubrobacter xylanophilus DSM 9941 basic membrane lipoprotein YP_642945.1 161064 D 266117 CDS YP_642946.1 108803009 4117802 162147..163703 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: gka:GK1284 ABC transporter (ATP-binding protein); ABC transporter-like protein 163703 4117802 Rxyl_0156 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_642946.1 162147 D 266117 CDS YP_642947.1 108803010 4117803 163700..164812 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: tte:TTE0459 uncharacterized ABC-type transport system, permease component; inner-membrane translocator 164812 4117803 Rxyl_0157 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_642947.1 163700 D 266117 CDS YP_642948.1 108803011 4117804 164812..165735 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: sth:STH1233 sugar ABC transporter permease; inner-membrane translocator 165735 4117804 Rxyl_0158 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_642948.1 164812 D 266117 CDS YP_642949.1 108803012 4117805 166077..167603 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO5454 two-component system sensor kinase; periplasmic sensor signal transduction histidine kinase 167603 4117805 Rxyl_0159 Rubrobacter xylanophilus DSM 9941 periplasmic sensor signal transduction histidine kinase YP_642949.1 166077 D 266117 CDS YP_642950.1 108803013 4117806 167600..168238 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: sco:SCO5455 two-component system response regulator; two component LuxR family transcriptional regulator 168238 4117806 Rxyl_0160 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_642950.1 167600 D 266117 CDS YP_642951.1 108803014 4117807 complement(168235..168627) 1 NC_008148.1 hypothetical protein 168627 4117807 Rxyl_0161 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642951.1 168235 R 266117 CDS YP_642952.1 108803015 4117867 complement(168717..168950) 1 NC_008148.1 PFAM: helix-turn-helix motif; KEGG: det:DET0884 transcriptional repressor LexA, putative; XRE family transcriptional regulator 168950 4117867 Rxyl_0162 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_642952.1 168717 R 266117 CDS YP_642953.1 108803016 4117868 169065..169478 1 NC_008148.1 hypothetical protein 169478 4117868 Rxyl_0163 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642953.1 169065 D 266117 CDS YP_642954.1 108803017 4117869 169553..169960 1 NC_008148.1 hypothetical protein 169960 4117869 Rxyl_0164 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642954.1 169553 D 266117 CDS YP_642955.1 108803018 4117870 complement(169977..170399) 1 NC_008148.1 TIGRFAM: SUF system FeS assembly protein; PFAM: nitrogen-fixing NifU-like-like; KEGG: lmf:LMOf2365_2383 NifU family protein; SUF system FeS assembly protein 170399 4117870 Rxyl_0165 Rubrobacter xylanophilus DSM 9941 SUF system FeS assembly protein YP_642955.1 169977 R 266117 CDS YP_642956.1 108803019 4117871 complement(170396..171622) 1 NC_008148.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Pyridoxal-dependent decarboxylase; KEGG: gka:GK2993 cysteine desulfurase; cysteine desulfurase 171622 4117871 Rxyl_0166 Rubrobacter xylanophilus DSM 9941 cysteine desulfurase YP_642956.1 170396 R 266117 CDS YP_642957.1 108803020 4117872 complement(171634..171993) 1 NC_008148.1 PFAM: Rieske [2Fe-2S] region; KEGG: pol:Bpro_4275 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 171993 4117872 Rxyl_0167 Rubrobacter xylanophilus DSM 9941 Rieske (2Fe-2S) domain-containing protein YP_642957.1 171634 R 266117 CDS YP_642958.1 108803021 4117873 complement(172002..173363) 1 NC_008148.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD; KEGG: dra:DR2101 hypothetical protein; Iron-regulated ABC transporter permease SufD 173363 4117873 Rxyl_0168 Rubrobacter xylanophilus DSM 9941 Iron-regulated ABC transporter permease SufD YP_642958.1 172002 R 266117 CDS YP_642959.1 108803022 4117874 complement(173360..173815) 1 NC_008148.1 PFAM: UspA; KEGG: tbd:Tbd_2614 universal stress protein; hypothetical protein 173815 4117874 Rxyl_0169 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642959.1 173360 R 266117 CDS YP_642960.1 108803023 4117875 complement(173919..175331) 1 NC_008148.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD; KEGG: dra:DR2106 hypothetical protein; Iron-regulated ABC transporter membrane component SufB 175331 4117875 Rxyl_0170 Rubrobacter xylanophilus DSM 9941 Iron-regulated ABC transporter membrane component SufB YP_642960.1 173919 R 266117 CDS YP_642961.1 108803024 4117876 complement(175342..176094) 1 NC_008148.1 KEGG: lin:lin2510 similar to ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: ATPase; FeS assembly ATPase SufC 176094 4117876 Rxyl_0171 Rubrobacter xylanophilus DSM 9941 FeS assembly ATPase SufC YP_642961.1 175342 R 266117 CDS YP_642962.1 108803025 4117877 complement(176347..177174) 1 NC_008148.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; type 11 methyltransferase 177174 4117877 Rxyl_0172 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_642962.1 176347 R 266117 CDS YP_642963.1 108803026 4117878 complement(177174..178103) 1 NC_008148.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ade:Adeh_2848 LigA; glycine cleavage T protein 178103 4117878 Rxyl_0173 Rubrobacter xylanophilus DSM 9941 glycine cleavage T protein YP_642963.1 177174 R 266117 CDS YP_642964.1 108803027 4117879 178156..178803 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: sco:SCO0790 hydrolase; HAD family hydrolase 178803 4117879 Rxyl_0174 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_642964.1 178156 D 266117 CDS YP_642965.1 108803028 4117880 178962..179165 1 NC_008148.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: neu:NE1731 cold-shock DNA-binding domain; cold-shock DNA-binding protein family protein 179165 4117880 Rxyl_0175 Rubrobacter xylanophilus DSM 9941 cold-shock DNA-binding protein family protein YP_642965.1 178962 D 266117 CDS YP_642966.1 108803029 4117881 complement(179239..180393) 1 NC_008148.1 PFAM: protein of unknown function DUF111; KEGG: gsu:GSU0141 hypothetical protein; hypothetical protein 180393 4117881 Rxyl_0176 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642966.1 179239 R 266117 CDS YP_642967.1 108803030 4117882 complement(180420..180770) 1 NC_008148.1 hypothetical protein 180770 4117882 Rxyl_0177 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642967.1 180420 R 266117 CDS YP_642968.1 108803031 4117883 complement(180767..181216) 1 NC_008148.1 PFAM: protein of unknown function DUF1469; KEGG: sma:SAV6345 putative integral membrane protein; hypothetical protein 181216 4117883 Rxyl_0178 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642968.1 180767 R 266117 CDS YP_642969.1 108803032 4117884 181437..182180 1 NC_008148.1 KEGG: mta:Moth_2003 uncharacterized MobA-related protein-like; MobA-like protein 182180 4117884 Rxyl_0179 Rubrobacter xylanophilus DSM 9941 MobA-like protein YP_642969.1 181437 D 266117 CDS YP_642970.1 108803033 4117885 182245..183426 1 NC_008148.1 KEGG: rsp:RSP_2910 predicted metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; peptidase M20D, amidohydrolase 183426 4117885 Rxyl_0180 Rubrobacter xylanophilus DSM 9941 peptidase M20D, amidohydrolase YP_642970.1 182245 D 266117 CDS YP_642971.1 108803034 4117886 complement(183423..184004) 1 NC_008148.1 KEGG: mba:Mbar_A0937 hypothetical protein; hypothetical protein 184004 4117886 Rxyl_0181 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642971.1 183423 R 266117 CDS YP_642972.1 108803035 4117887 complement(184015..184398) 1 NC_008148.1 PFAM: mannose-6-phosphate isomerase, type II Cupin 2, conserved barrel; KEGG: pmm:PMM1196 GDP-mannose pyrophosphorylase; mannose-6-phosphate isomerase I 184398 4117887 Rxyl_0182 Rubrobacter xylanophilus DSM 9941 mannose-6-phosphate isomerase I YP_642972.1 184015 R 266117 CDS YP_642973.1 108803036 4117888 complement(184447..185076) 1 NC_008148.1 hypothetical protein 185076 4117888 Rxyl_0183 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642973.1 184447 R 266117 CDS YP_642974.1 108803037 4117889 complement(185248..186081) 1 NC_008148.1 PFAM: protein kinase; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: ade:Adeh_2796 serine/threonine protein kinase; serine/threonine protein kinase 186081 4117889 Rxyl_0184 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_642974.1 185248 R 266117 CDS YP_642975.1 108803038 4117890 complement(186078..187913) 1 NC_008148.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: sma:SAV3872 putative ABC transporter ATP-binding protein; ABC transporter-like protein 187913 4117890 Rxyl_0185 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_642975.1 186078 R 266117 CDS YP_642976.1 108803039 4117891 complement(188212..189642) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: gka:GK1689 two-component sensor histidine kinase; sensor signal transduction histidine kinase 189642 4117891 Rxyl_0186 Rubrobacter xylanophilus DSM 9941 sensor signal transduction histidine kinase YP_642976.1 188212 R 266117 CDS YP_642977.1 108803040 4117892 189705..190388 1 NC_008148.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: gme:Gmet_3383 two component transcriptional regulator, winged helix family; two component transcriptional regulator 190388 4117892 Rxyl_0187 Rubrobacter xylanophilus DSM 9941 two component transcriptional regulator YP_642977.1 189705 D 266117 CDS YP_642978.1 108803041 4117893 190385..191527 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: bcl:ABC0532 glycine/D-amino acid oxidase; FAD dependent oxidoreductase 191527 4117893 Rxyl_0188 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_642978.1 190385 D 266117 CDS YP_642979.1 108803042 4117894 191530..192429 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gsu:GSU2676 hypothetical protein; hypothetical protein 192429 4117894 Rxyl_0189 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642979.1 191530 D 266117 CDS YP_642980.1 108803043 4117895 complement(192426..192977) 1 NC_008148.1 hypothetical protein 192977 4117895 Rxyl_0190 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642980.1 192426 R 266117 CDS YP_642981.1 108803044 4117896 193158..193526 1 NC_008148.1 PFAM: ferredoxin; KEGG: rba:RB9190 ferredoxin; ferredoxin 193526 4117896 Rxyl_0191 Rubrobacter xylanophilus DSM 9941 ferredoxin YP_642981.1 193158 D 266117 CDS YP_642982.1 108803045 4117897 193695..195083 1 NC_008148.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2404 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein 195083 4117897 Rxyl_0192 Rubrobacter xylanophilus DSM 9941 glycine cleavage T protein YP_642982.1 193695 D 266117 CDS YP_642983.1 108803046 4117898 195115..196359 1 NC_008148.1 PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB1592 putative ABC transport system, substrate-binding protein; extracellular ligand-binding receptor 196359 4117898 Rxyl_0193 Rubrobacter xylanophilus DSM 9941 extracellular ligand-binding receptor YP_642983.1 195115 D 266117 CDS YP_642984.1 108803047 4117899 196379..197248 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP2196 putative ABC transport system, membrane protein; inner-membrane translocator 197248 4117899 Rxyl_0194 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_642984.1 196379 D 266117 CDS YP_642985.1 108803048 4117900 197245..198258 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: bbr:BB1594 putative ABC transport system, membrane protein; inner-membrane translocator 198258 4117900 Rxyl_0195 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_642985.1 197245 D 266117 CDS YP_642986.1 108803049 4117901 198255..199010 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bbr:BB1595 putative ABC transport system, ATP-bidning protein; ABC transporter-like protein 199010 4117901 Rxyl_0196 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_642986.1 198255 D 266117 CDS YP_642987.1 108803050 4117902 199003..199707 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bja:blr1067 ABC transporter ATP-binding protein; ABC transporter-like protein 199707 4117902 Rxyl_0197 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_642987.1 199003 D 266117 CDS YP_642988.1 108803051 4117903 complement(199713..200498) 1 NC_008148.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mag:amb0253 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; 6-phosphogluconate dehydrogenase 200498 4117903 Rxyl_0198 Rubrobacter xylanophilus DSM 9941 6-phosphogluconate dehydrogenase YP_642988.1 199713 R 266117 CDS YP_642989.1 108803052 4117904 complement(200495..201469) 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr3819 metapyrocatechase; catechol 2,3-dioxygenase 201469 4117904 Rxyl_0199 Rubrobacter xylanophilus DSM 9941 catechol 2,3-dioxygenase YP_642989.1 200495 R 266117 CDS YP_642990.1 108803053 4117905 complement(201466..202092) 1 NC_008148.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: sme:SMc00502 hypothetical protein; dimethylmenaquinone methyltransferase 202092 4117905 Rxyl_0200 Rubrobacter xylanophilus DSM 9941 dimethylmenaquinone methyltransferase YP_642990.1 201466 R 266117 CDS YP_642991.1 108803054 4117828 complement(202089..202808) 1 NC_008148.1 KEGG: yps:YPTB0079 hypothetical protein; hypothetical protein 202808 4117828 Rxyl_0201 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642991.1 202089 R 266117 CDS YP_642992.1 108803055 4117829 complement(202808..203749) 1 NC_008148.1 KEGG: mth:MTH1911 hypothetical protein; hypothetical protein 203749 4117829 Rxyl_0202 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642992.1 202808 R 266117 CDS YP_642993.1 108803056 4117830 complement(203836..204714) 1 NC_008148.1 PFAM: polysaccharide deacetylase; KEGG: pfo:Pfl_2856 polysaccharide deacetylase; polysaccharide deacetylase 204714 4117830 Rxyl_0203 Rubrobacter xylanophilus DSM 9941 polysaccharide deacetylase YP_642993.1 203836 R 266117 CDS YP_642994.1 108803057 4117831 204839..205720 1 NC_008148.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mag:amb2827 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 205720 4117831 Rxyl_0204 Rubrobacter xylanophilus DSM 9941 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_642994.1 204839 D 266117 CDS YP_642995.1 108803058 4117832 205837..206664 1 NC_008148.1 PFAM: intradiol ring-cleavage dioxygenase Catechol dioxygenase-like; KEGG: atc:AGR_C_4592 hypothetical protein; intradiol ring-cleavage dioxygenase 206664 4117832 Rxyl_0205 Rubrobacter xylanophilus DSM 9941 intradiol ring-cleavage dioxygenase YP_642995.1 205837 D 266117 CDS YP_642996.1 108803059 4117833 206674..208074 1 NC_008148.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: reu:Reut_C6231 amidohydrolase:amidohydrolase-like; hypothetical protein 208074 4117833 Rxyl_0206 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_642996.1 206674 D 266117 CDS YP_642997.1 108803060 4117834 208090..209073 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr2898 putative zinc binding dehydrogenase; zinc-binding alcohol dehydrogenase 209073 4117834 Rxyl_0207 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_642997.1 208090 D 266117 CDS YP_642998.1 108803061 4117835 209161..209850 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sma:SAV1619 putative GntR-family transcriptional regulator; GntR family transcriptional regulator 209850 4117835 Rxyl_0208 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_642998.1 209161 D 266117 CDS YP_642999.1 108803062 4117836 209961..211313 1 NC_008148.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2861 vanillate/3-O-methylgallate O-demethylase; glycine cleavage T protein 211313 4117836 Rxyl_0209 Rubrobacter xylanophilus DSM 9941 glycine cleavage T protein YP_642999.1 209961 D 266117 CDS YP_643000.1 108803063 4117837 211342..211923 1 NC_008148.1 KEGG: nfa:nfa21490 hypothetical protein; hypothetical protein 211923 4117837 Rxyl_0210 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643000.1 211342 D 266117 CDS YP_643001.1 108803064 4117838 complement(211945..212910) 1 NC_008148.1 PFAM: luciferase-like; KEGG: nfa:nfa43060 hypothetical protein; luciferase-like protein 212910 4117838 Rxyl_0211 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_643001.1 211945 R 266117 CDS YP_643002.1 108803065 4117839 complement(212981..213508) 1 NC_008148.1 TIGRFAM: ATP; PFAM: regulatory protein GntR, HTH cobalamin adenosyltransferase; KEGG: bur:Bcep18194_A3822 cobalamin adenosyltransferase; ATP:cob(I)alamin adenosyltransferase 213508 4117839 Rxyl_0212 Rubrobacter xylanophilus DSM 9941 ATP:cob(I)alamin adenosyltransferase YP_643002.1 212981 R 266117 CDS YP_643003.1 108803066 4117840 213621..214961 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein; twin-arginine translocation pathway signal protein 214961 4117840 Rxyl_0213 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_643003.1 213621 D 266117 CDS YP_643004.1 108803067 4117841 215006..215704 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02355 acetyltransferase; N-acetyltransferase GCN5 215704 4117841 Rxyl_0214 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_643004.1 215006 D 266117 CDS YP_643005.1 108803068 4117842 215719..217260 1 NC_008148.1 KEGG: afu:AF1297 cell division control protein 48, AAA family (cdc48-1); PFAM: AAA ATPase, central region; SMART: ATPase; vesicle-fusing ATPase 217260 4117842 Rxyl_0215 Rubrobacter xylanophilus DSM 9941 vesicle-fusing ATPase YP_643005.1 215719 D 266117 CDS YP_643006.1 108803069 4117843 217457..218635 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcz:BCZK2672 acetyltransferase, GNAT family; N-acetyltransferase GCN5 218635 4117843 Rxyl_0216 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_643006.1 217457 D 266117 CDS YP_643007.1 108803070 4117844 218740..219744 1 NC_008148.1 PFAM: luciferase-like; KEGG: sme:SMb20100 putative dehydrogenase protein; luciferase-like protein 219744 4117844 Rxyl_0217 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_643007.1 218740 D 266117 CDS YP_643008.1 108803071 4117845 219746..220690 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bcl:ABC3060 drug/metabolite transporter (DMT) superfamily protein; hypothetical protein 220690 4117845 Rxyl_0218 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643008.1 219746 D 266117 CDS YP_643009.1 108803072 4117846 221052..222455 1 NC_008148.1 KEGG: gka:GK1423 dihydropyrimidinase; TIGRFAM: D-hydantoinase; PFAM: amidohydrolase Amidohydrolase 3; dihydropyrimidinase 222455 4117846 Rxyl_0219 Rubrobacter xylanophilus DSM 9941 dihydropyrimidinase YP_643009.1 221052 D 266117 CDS YP_643010.1 108803073 4117847 222452..223762 1 NC_008148.1 PFAM: aminotransferase class-III; KEGG: sma:SAV1952 putative aminotransferase; aminotransferase 223762 4117847 Rxyl_0220 Rubrobacter xylanophilus DSM 9941 aminotransferase YP_643010.1 222452 D 266117 CDS YP_643011.1 108803074 4117712 223765..225018 1 NC_008148.1 KEGG: sai:Saci_2132 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20; hydantoinase/carbamoylase 225018 4117712 Rxyl_0221 Rubrobacter xylanophilus DSM 9941 hydantoinase/carbamoylase YP_643011.1 223765 D 266117 CDS YP_643012.1 108803075 4117713 225063..226592 1 NC_008148.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: sco:SCO6417 putative integral membrane transporter; NCS1 nucleoside transporter 226592 4117713 Rxyl_0222 Rubrobacter xylanophilus DSM 9941 NCS1 nucleoside transporter YP_643012.1 225063 D 266117 CDS YP_643013.1 108803076 4117714 226592..227617 1 NC_008148.1 PFAM: luciferase-like; KEGG: sma:SAV1948 putative N5,N10-methylene-tetrahydromethanopterin reductase; methylenetetrahydromethanopterin reductase 227617 4117714 Rxyl_0223 Rubrobacter xylanophilus DSM 9941 methylenetetrahydromethanopterin reductase YP_643013.1 226592 D 266117 CDS YP_643014.1 108803077 4117715 227620..228906 1 NC_008148.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: bcl:ABC4032 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 228906 4117715 Rxyl_0224 Rubrobacter xylanophilus DSM 9941 N-isopropylammelide isopropylaminohydrolase YP_643014.1 227620 D 266117 CDS YP_643015.1 108803078 4117716 228998..230713 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_0707 ABC transporter related; ABC transporter-like protein 230713 4117716 Rxyl_0225 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643015.1 228998 D 266117 CDS YP_643016.1 108803079 4117717 230710..231498 1 NC_008148.1 PFAM: cobalt transport protein; KEGG: mta:Moth_0708 cobalt transport protein; cobalt transport protein 231498 4117717 Rxyl_0226 Rubrobacter xylanophilus DSM 9941 cobalt transport protein YP_643016.1 230710 D 266117 CDS YP_643017.1 108803080 4117718 231513..232361 1 NC_008148.1 KEGG: mta:Moth_0709 hypothetical protein; hypothetical protein 232361 4117718 Rxyl_0227 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643017.1 231513 D 266117 CDS YP_643018.1 108803081 4117719 232375..233643 1 NC_008148.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 233643 4117719 Rxyl_0228 Rubrobacter xylanophilus DSM 9941 S-adenosyl-L-homocysteine hydrolase YP_643018.1 232375 D 266117 CDS YP_643019.1 108803082 4117720 233750..234748 1 NC_008148.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase HI0933-like protein; KEGG: mpa:MAP4339 thioredoxin reductase; thioredoxin reductase 234748 4117720 Rxyl_0229 Rubrobacter xylanophilus DSM 9941 thioredoxin reductase YP_643019.1 233750 D 266117 CDS YP_643020.1 108803083 4117721 complement(235008..236717) 1 NC_008148.1 PFAM: PHP-like; SMART: DNA polymerase X Phosphoesterase PHP-like Helix-hairpin-helix DNA-binding, class 1; KEGG: mca:MCA1213 hypothetical protein; PHP-like protein 236717 4117721 Rxyl_0230 Rubrobacter xylanophilus DSM 9941 PHP-like protein YP_643020.1 235008 R 266117 CDS YP_643021.1 108803084 4117722 236802..237518 1 NC_008148.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sat:SYN_02354 phosphatidylglycerophosphatase B -like protein; PA-phosphatase-like phosphoesterase 237518 4117722 Rxyl_0231 Rubrobacter xylanophilus DSM 9941 PA-phosphatase-like phosphoesterase YP_643021.1 236802 D 266117 CDS YP_643022.1 108803085 4117723 237571..238944 1 NC_008148.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: pca:Pcar_1019 uncharacterized membrane-associated protein-like; PA-phosphatase-like phosphoesterase 238944 4117723 Rxyl_0232 Rubrobacter xylanophilus DSM 9941 PA-phosphatase-like phosphoesterase YP_643022.1 237571 D 266117 CDS YP_643023.1 108803086 4117724 238976..239635 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: reu:Reut_B5875 regulatory protein GntR, HTH:GntR, C-terminal; GntR family transcriptional regulator 239635 4117724 Rxyl_0233 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643023.1 238976 D 266117 CDS YP_643024.1 108803087 4117725 complement(239690..241042) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: ypm:YP3897 putative metabolite transport protein; major facilitator transporter 241042 4117725 Rxyl_0234 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643024.1 239690 R 266117 CDS YP_643025.1 108803088 4117726 complement(241058..242137) 1 NC_008148.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpa:RPA1563 putative nitrilase; nitrilase 242137 4117726 Rxyl_0235 Rubrobacter xylanophilus DSM 9941 nitrilase YP_643025.1 241058 R 266117 CDS YP_643026.1 108803089 4117727 complement(242203..243711) 1 NC_008148.1 PFAM: carboxyl transferase; KEGG: sma:SAV5722 putative acetyl CoA carboxylase beta subunit; carboxyl transferase 243711 4117727 Rxyl_0236 Rubrobacter xylanophilus DSM 9941 carboxyl transferase YP_643026.1 242203 R 266117 CDS YP_643027.1 108803090 4117728 245063..246490 1 NC_008148.1 PFAM: Amidase; KEGG: bbr:BB4983 probable amidase; amidase 246490 4117728 Rxyl_0238 Rubrobacter xylanophilus DSM 9941 amidase YP_643027.1 245063 D 266117 CDS YP_643028.1 108803091 4117729 complement(246483..247112) 1 NC_008148.1 PFAM: glutathione S-transferase-like; KEGG: pae:PA2813 probable glutathione S-transferase; glutathione S-transferase-like protein 247112 4117729 Rxyl_0239 Rubrobacter xylanophilus DSM 9941 glutathione S-transferase-like protein YP_643028.1 246483 R 266117 CDS YP_643029.1 108803092 4117730 complement(247109..247774) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_0073 transcriptional regulator, GntR family; GntR family transcriptional regulator 247774 4117730 Rxyl_0240 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643029.1 247109 R 266117 CDS YP_643030.1 108803093 4116072 247896..248894 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: bja:blr4371 hypothetical protein; twin-arginine translocation pathway signal protein 248894 4116072 Rxyl_0241 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_643030.1 247896 D 266117 CDS YP_643031.1 108803094 4116073 248891..249364 1 NC_008148.1 KEGG: sco:SCO1139 integral membrane protein; integral membrane protein 249364 4116073 Rxyl_0242 Rubrobacter xylanophilus DSM 9941 integral membrane protein YP_643031.1 248891 D 266117 CDS YP_643032.1 108803095 4116074 249368..250894 1 NC_008148.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll0952 hypothetical protein; hypothetical protein 250894 4116074 Rxyl_0243 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643032.1 249368 D 266117 CDS YP_643033.1 108803096 4116075 250900..252087 1 NC_008148.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_A2908 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 252087 4116075 Rxyl_0244 Rubrobacter xylanophilus DSM 9941 L-carnitine dehydratase/bile acid-inducible protein F YP_643033.1 250900 D 266117 CDS YP_643034.1 108803097 4116076 252084..252866 1 NC_008148.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 252866 4116076 Rxyl_0245 Rubrobacter xylanophilus DSM 9941 enoyl-CoA hydratase YP_643034.1 252084 D 266117 CDS YP_643035.1 108803098 4116077 252866..253414 1 NC_008148.1 KEGG: tfu:Tfu_0193 similar to carbonic anhydrase/acetyltransferase isoleucine patch superfamily; carbonic anhydrase 253414 4116077 Rxyl_0246 Rubrobacter xylanophilus DSM 9941 carbonic anhydrase YP_643035.1 252866 D 266117 CDS YP_643036.1 108803099 4116078 253411..254559 1 NC_008148.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_A4039 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 254559 4116078 Rxyl_0247 Rubrobacter xylanophilus DSM 9941 L-carnitine dehydratase/bile acid-inducible protein F YP_643036.1 253411 D 266117 CDS YP_643037.1 108803100 4116079 254588..255352 1 NC_008148.1 PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_3084 conserved hypothetical membrane permease protein; hypothetical protein 255352 4116079 Rxyl_0248 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643037.1 254588 D 266117 CDS YP_643038.1 108803101 4116080 255411..256214 1 NC_008148.1 PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein; hypothetical protein 256214 4116080 Rxyl_0249 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643038.1 255411 D 266117 CDS YP_643039.1 108803102 4116081 256248..256841 1 NC_008148.1 KEGG: ana:alr2975 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 256841 4116081 Rxyl_0250 Rubrobacter xylanophilus DSM 9941 signal peptidase I YP_643039.1 256248 D 266117 CDS YP_643040.1 108803103 4116082 complement(256838..258289) 1 NC_008148.1 KEGG: syf:Synpcc7942_1019 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; amylomaltase 258289 4116082 Rxyl_0251 Rubrobacter xylanophilus DSM 9941 amylomaltase YP_643040.1 256838 R 266117 CDS YP_643041.1 108803104 4116083 complement(258292..259344) 1 NC_008148.1 PFAM: peptidase M20 peptidase M42; KEGG: pho:PH1527 Frv operon protein FrvX; peptidase M42 259344 4116083 Rxyl_0252 Rubrobacter xylanophilus DSM 9941 peptidase M42 YP_643041.1 258292 R 266117 CDS YP_643042.1 108803105 4116084 259502..259987 1 NC_008148.1 KEGG: bld:BLi00693 phosphoribosylaminoimidazole carboxylase I; RBL03724; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 259987 4116084 Rxyl_0253 Rubrobacter xylanophilus DSM 9941 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_643042.1 259502 D 266117 CDS YP_643043.1 108803106 4116085 259984..261150 1 NC_008148.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase ATP-dependent carboxylate-amine ligase-like, ATP-grasp protein of unknown function DUF201; KEGG: gka:GK0258 phosphoribosylaminoimidazole carboxylasecarbon dioxide-fixation chain; phosphoribosylaminoimidazole carboxylase 261150 4116085 Rxyl_0254 Rubrobacter xylanophilus DSM 9941 phosphoribosylaminoimidazole carboxylase YP_643043.1 259984 D 266117 CDS YP_643044.1 108803107 4116086 261195..262205 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: lic:LIC10958 alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 262205 4116086 Rxyl_0255 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_643044.1 261195 D 266117 CDS YP_643045.1 108803108 4116087 complement(263398..263667) 1 NC_008148.1 PFAM: protein of unknown function DUF196; KEGG: tma:TM1796 hypothetical protein; CRISPR-associated Cas2 family protein 263667 4116087 Rxyl_0256 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Cas2 family protein YP_643045.1 263398 R 266117 CDS YP_643046.1 108803109 4116088 complement(263671..264666) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: chy:CHY_2152 CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein 264666 4116088 Rxyl_0257 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Cas1 family protein YP_643046.1 263671 R 266117 CDS YP_643047.1 108803110 4116089 complement(264673..265794) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein APE2256; KEGG: chy:CHY_2123 putative CRISPR-associated protein; CRISPR-associated family protein 265794 4116089 Rxyl_0258 Rubrobacter xylanophilus DSM 9941 CRISPR-associated family protein YP_643047.1 264673 R 266117 CDS YP_643048.1 108803111 4116090 complement(265787..267004) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein, TM1791; PFAM: protein of unknown function DUF324; KEGG: tma:TM1791 hypothetical protein; CRISPR-associated RAMP Cmr6 family protein 267004 4116090 Rxyl_0259 Rubrobacter xylanophilus DSM 9941 CRISPR-associated RAMP Cmr6 family protein YP_643048.1 265787 R 266117 CDS YP_643049.1 108803112 4116091 complement(267001..267426) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein, TM1791.1; KEGG: afu:AF1862 hypothetical protein; CRISPR-associated Cmr5 family protein 267426 4116091 Rxyl_0260 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Cmr5 family protein YP_643049.1 267001 R 266117 CDS YP_643050.1 108803113 4117751 complement(267426..268226) 1 NC_008148.1 TIGRFAM: CRISPR-associated RAMP Cmr4; PFAM: protein of unknown function DUF324; KEGG: pfu:PF1126 hypothetical protein; CRISPR-associated RAMP Cmr4 family protein family protein 268226 4117751 Rxyl_0261 Rubrobacter xylanophilus DSM 9941 CRISPR-associated RAMP Cmr4 family protein family protein YP_643050.1 267426 R 266117 CDS YP_643051.1 108803114 4117752 complement(268235..269317) 1 NC_008148.1 KEGG: tth:TT_P0116 hypothetical protein; hypothetical protein 269317 4117752 Rxyl_0262 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643051.1 268235 R 266117 CDS YP_643052.1 108803115 4117753 complement(269314..271203) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein Crm2; KEGG: tte:TTE2639 predicted hydrolase of the HD superfamily (permuted catalytic motifs); CRISPR-associated Cmr2 family protein 271203 4117753 Rxyl_0263 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Cmr2 family protein YP_643052.1 269314 R 266117 CDS YP_643053.1 108803116 4117754 complement(271200..272342) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein TM1795 family-like; PFAM: protein of unknown function DUF324; KEGG: ttj:TTHB162 hypothetical protein; CRISPR-associated RAMP Cmr1 family protein 272342 4117754 Rxyl_0264 Rubrobacter xylanophilus DSM 9941 CRISPR-associated RAMP Cmr1 family protein YP_643053.1 271200 R 266117 CDS YP_643054.1 108803117 4117755 complement(272345..274057) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein, TM1812 CRISPR-associated protein DxTHG; KEGG: tma:TM1812 hypothetical protein; CRISPR-associated Csx2 family protein 274057 4117755 Rxyl_0265 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Csx2 family protein YP_643054.1 272345 R 266117 CDS YP_643055.1 108803118 4117756 complement(274071..274559) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: tte:TTE2659 RecB family exonuclease; CRISPR-associated exonuclease Cas4 family protein 274559 4117756 Rxyl_0266 Rubrobacter xylanophilus DSM 9941 CRISPR-associated exonuclease Cas4 family protein YP_643055.1 274071 R 266117 CDS YP_643056.1 108803119 4117757 complement(274556..277021) 1 NC_008148.1 TIGRFAM: CRISPR-associated helicase Cas3, core; KEGG: chy:CHY_2154 CRISPR-associated helicase Cas3; CRISPR-associated helicase Cas3 family protein 277021 4117757 Rxyl_0267 Rubrobacter xylanophilus DSM 9941 CRISPR-associated helicase Cas3 family protein YP_643056.1 274556 R 266117 CDS YP_643057.1 108803120 4117758 complement(277018..277794) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein Cas5; KEGG: chy:CHY_2155 CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated Cas5h family protein 277794 4117758 Rxyl_0268 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Cas5h family protein YP_643057.1 277018 R 266117 CDS YP_643058.1 108803121 4117759 complement(277798..278742) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein Csh2; PFAM: CRISPR-associated protein TM1801; KEGG: chy:CHY_2156 CRISPR-associated protein, Csh2 family; CRISPR-associated Csh2 family protein 278742 4117759 Rxyl_0269 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Csh2 family protein YP_643058.1 277798 R 266117 CDS YP_643059.1 108803122 4117760 complement(278756..280768) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein Csh1-like; KEGG: chy:CHY_2157 CRISPR-associated protein, Csh1 family; CRISPR-associated Csh1 family protein 280768 4117760 Rxyl_0270 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Csh1 family protein YP_643059.1 278756 R 266117 CDS YP_643060.1 108803123 4117761 complement(280765..281538) 1 NC_008148.1 TIGRFAM: CRISPR-associated protein, TM1814; PFAM: protein of unknown function DUF57; KEGG: tte:TTE2664 hypothetical protein; CRISPR-associated Cas6 family protein 281538 4117761 Rxyl_0271 Rubrobacter xylanophilus DSM 9941 CRISPR-associated Cas6 family protein YP_643060.1 280765 R 266117 CDS YP_643061.1 108803124 4117762 complement(281664..282434) 1 NC_008148.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pae:PA3857 phosphatidylcholine synthase; CDP-diacylglycerol-choline O-phosphatidyltransferase 282434 4117762 Rxyl_0272 Rubrobacter xylanophilus DSM 9941 CDP-diacylglycerol-choline O-phosphatidyltransferase YP_643061.1 281664 R 266117 CDS YP_643062.1 108803125 4117763 complement(282524..284209) 1 NC_008148.1 KEGG: tte:TTE0034 hypothetical protein; hypothetical protein 284209 4117763 Rxyl_0273 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643062.1 282524 R 266117 CDS YP_643063.1 108803126 4117764 complement(284515..285507) 1 NC_008148.1 KEGG: tte:TTE1453 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase 285507 4117764 Rxyl_0275 Rubrobacter xylanophilus DSM 9941 tryptophanyl-tRNA synthetase YP_643063.1 284515 R 266117 CDS YP_643064.1 108803127 4117765 complement(285668..286381) 1 NC_008148.1 PFAM: regulatory proteins, IclR; KEGG: tfu:Tfu_0625 regulatory proteins, IclR; IclR family transcriptional regulator 286381 4117765 Rxyl_0276 Rubrobacter xylanophilus DSM 9941 IclR family transcriptional regulator YP_643064.1 285668 R 266117 CDS YP_643065.1 108803128 4117766 286472..287206 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; SMART: Ribosomal RNA adenine methylase transferase; KEGG: mca:MCA0998 methyltransferase, putative; type 11 methyltransferase 287206 4117766 Rxyl_0277 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_643065.1 286472 D 266117 CDS YP_643066.1 108803129 4117767 287254..288663 1 NC_008148.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 288663 4117767 Rxyl_0278 Rubrobacter xylanophilus DSM 9941 isopropylmalate isomerase large subunit YP_643066.1 287254 D 266117 CDS YP_643067.1 108803130 4117768 288664..289251 1 NC_008148.1 KEGG: fra:Francci3_3620 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase-like; 3-isopropylmalate dehydratase small subunit 289251 4117768 Rxyl_0279 Rubrobacter xylanophilus DSM 9941 3-isopropylmalate dehydratase small subunit YP_643067.1 288664 D 266117 CDS YP_643068.1 108803131 4117769 complement(289269..289859) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: sth:STH2911 TetR family transcriptional regulator?; TetR family transcriptional regulator 289859 4117769 Rxyl_0280 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_643068.1 289269 R 266117 CDS YP_643069.1 108803132 4117808 289947..290264 1 NC_008148.1 PFAM: small multidrug resistance protein; KEGG: gsu:GSU0707 SugE protein; small multidrug resistance protein 290264 4117808 Rxyl_0281 Rubrobacter xylanophilus DSM 9941 small multidrug resistance protein YP_643069.1 289947 D 266117 CDS YP_643070.1 108803133 4117809 290468..291385 1 NC_008148.1 PFAM: luciferase-like; KEGG: nfa:nfa10300 putative monooxygenase; luciferase-like protein 291385 4117809 Rxyl_0282 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_643070.1 290468 D 266117 CDS YP_643071.1 108803134 4117810 complement(291382..292206) 1 NC_008148.1 PFAM: protein of unknown function DUF427; KEGG: mlo:mll7342 hypothetical protein; hypothetical protein 292206 4117810 Rxyl_0283 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643071.1 291382 R 266117 CDS YP_643072.1 108803135 4117811 292334..293428 1 NC_008148.1 hypothetical protein 293428 4117811 Rxyl_0284 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643072.1 292334 D 266117 CDS YP_643073.1 108803136 4117812 293446..294843 1 NC_008148.1 KEGG: gsu:GSU0719 hypothetical protein; hypothetical protein 294843 4117812 Rxyl_0285 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643073.1 293446 D 266117 CDS YP_643074.1 108803137 4117813 complement(294628..295965) 1 NC_008148.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ava:Ava_1825 hypothetical protein; FAD dependent oxidoreductase 295965 4117813 Rxyl_0286 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_643074.1 294628 R 266117 CDS YP_643075.1 108803138 4117814 296085..296672 1 NC_008148.1 PFAM: Methyltransferase type 11; KEGG: bat:BAS4721 ribosomal RNA adenine dimethylase domain protein; type 11 methyltransferase 296672 4117814 Rxyl_0287 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_643075.1 296085 D 266117 CDS YP_643076.1 108803139 4117815 296669..297307 1 NC_008148.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: sth:STH1715 phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 297307 4117815 Rxyl_0288 Rubrobacter xylanophilus DSM 9941 phosphatidylserine decarboxylase YP_643076.1 296669 D 266117 CDS YP_643077.1 108803140 4117816 297304..297861 1 NC_008148.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 297861 4117816 Rxyl_0289 Rubrobacter xylanophilus DSM 9941 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_643077.1 297304 D 266117 CDS YP_643078.1 108803141 4117817 298025..298228 1 NC_008148.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: xfa:XF2352 cold shock protein; cold-shock DNA-binding protein family protein 298228 4117817 Rxyl_0290 Rubrobacter xylanophilus DSM 9941 cold-shock DNA-binding protein family protein YP_643078.1 298025 D 266117 CDS YP_643079.1 108803142 4117818 298574..299500 1 NC_008148.1 PFAM: Integral membrane protein TerC; KEGG: gvi:glr4409 putative transmembrane transport protein; integral membrane protein TerC 299500 4117818 Rxyl_0291 Rubrobacter xylanophilus DSM 9941 integral membrane protein TerC YP_643079.1 298574 D 266117 CDS YP_643080.1 108803143 4117819 299533..301887 1 NC_008148.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS-like MutS III MutS II MutS IV; KEGG: sth:STH1757 DNA mismatch repair protein; DNA mismatch repair protein MutS 301887 4117819 Rxyl_0292 Rubrobacter xylanophilus DSM 9941 DNA mismatch repair protein MutS YP_643080.1 299533 D 266117 CDS YP_643081.1 108803144 4117820 301884..303482 1 NC_008148.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase-like DNA mismatch repair protein-like; KEGG: ade:Adeh_1715 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 303482 4117820 Rxyl_0293 Rubrobacter xylanophilus DSM 9941 DNA mismatch repair protein MutL YP_643081.1 301884 D 266117 CDS YP_643082.1 108803145 4117821 complement(303479..303637) 1 NC_008148.1 hypothetical protein 303637 4117821 Rxyl_0294 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643082.1 303479 R 266117 CDS YP_643083.1 108803146 4117822 303733..305364 1 NC_008148.1 PFAM: gamma-glutamyltranspeptidase; KEGG: mlo:mll6984 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2 305364 4117822 Rxyl_0295 Rubrobacter xylanophilus DSM 9941 gamma-glutamyltransferase 2 YP_643083.1 303733 D 266117 CDS YP_643084.1 108803147 4117823 305366..305842 1 NC_008148.1 KEGG: tte:TTE1564 hypothetical protein; hypothetical protein 305842 4117823 Rxyl_0296 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643084.1 305366 D 266117 CDS YP_643085.1 108803148 4117824 305916..307199 1 NC_008148.1 PFAM: natural resistance-associated macrophage protein; KEGG: sco:SCO4993 metal ion transport protein; natural resistance-associated macrophage protein 307199 4117824 Rxyl_0297 Rubrobacter xylanophilus DSM 9941 natural resistance-associated macrophage protein YP_643085.1 305916 D 266117 CDS YP_643086.1 108803149 4117825 complement(307196..307819) 1 NC_008148.1 hypothetical protein 307819 4117825 Rxyl_0298 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643086.1 307196 R 266117 CDS YP_643087.1 108803150 4117826 308173..310686 1 NC_008148.1 PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: tte:TTE2327 ATPases with chaperone activity, ATP-binding subunit; ATPase 310686 4117826 Rxyl_0299 Rubrobacter xylanophilus DSM 9941 ATPase YP_643087.1 308173 D 266117 CDS YP_643088.1 108803151 4117827 complement(310750..311454) 1 NC_008148.1 PFAM: glutathione S-transferase-like; KEGG: bur:Bcep18194_A5556 glutathione S-transferase-like; glutathione S-transferase-like protein 311454 4117827 Rxyl_0300 Rubrobacter xylanophilus DSM 9941 glutathione S-transferase-like protein YP_643088.1 310750 R 266117 CDS YP_643089.1 108803152 4114762 complement(311532..313613) 1 NC_008148.1 KEGG: tth:TTC0808 glycogen phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; alpha-glucan phosphorylase 313613 4114762 Rxyl_0301 Rubrobacter xylanophilus DSM 9941 alpha-glucan phosphorylase YP_643089.1 311532 R 266117 CDS YP_643090.1 108803153 4114763 313672..315426 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: gme:Gmet_2460 histidine kinase; histidine kinase 315426 4114763 Rxyl_0302 Rubrobacter xylanophilus DSM 9941 histidine kinase YP_643090.1 313672 D 266117 CDS YP_643091.1 108803154 4114764 complement(315405..316088) 1 NC_008148.1 hypothetical protein 316088 4114764 Rxyl_0303 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643091.1 315405 R 266117 CDS YP_643092.1 108803155 4114765 316256..316705 1 NC_008148.1 PFAM: Hemolysin-type calcium-binding region; KEGG: dde:Dde_1416 hypothetical protein; hemolysin-type calcium-binding region 316705 4114765 Rxyl_0304 Rubrobacter xylanophilus DSM 9941 hemolysin-type calcium-binding region YP_643092.1 316256 D 266117 CDS YP_643093.1 108803156 4114766 complement(316723..318075) 1 NC_008148.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 318075 4114766 Rxyl_0305 Rubrobacter xylanophilus DSM 9941 tryptophan synthase subunit beta YP_643093.1 316723 R 266117 CDS YP_643094.1 108803157 4114767 complement(318153..319823) 1 NC_008148.1 PFAM: metallophosphoesterase 5'-Nucleotidase-like; KEGG: gka:GK1763 5'-nucleotidase; 5'-nucleotidase-like protein 319823 4114767 Rxyl_0306 Rubrobacter xylanophilus DSM 9941 5'-nucleotidase-like protein YP_643094.1 318153 R 266117 CDS YP_643095.1 108803158 4114768 complement(319836..320795) 1 NC_008148.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: btk:BT9727_3270 glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 320795 4114768 Rxyl_0307 Rubrobacter xylanophilus DSM 9941 glycerophosphodiester phosphodiesterase YP_643095.1 319836 R 266117 CDS YP_643096.1 108803159 4114769 complement(320910..322472) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: ana:all0207 putative phosphodiesterase; twin-arginine translocation pathway signal protein 322472 4114769 Rxyl_0308 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_643096.1 320910 R 266117 CDS YP_643097.1 108803160 4114770 complement(322484..324526) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: tfu:Tfu_2294 phosphatase; twin-arginine translocation pathway signal protein 324526 4114770 Rxyl_0309 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_643097.1 322484 R 266117 CDS YP_643098.1 108803161 4114771 complement(324761..326245) 1 NC_008148.1 PFAM: Alkaline phosphatase; KEGG: ava:Ava_3741 twin-arginine translocation pathway signal; alkaline phosphatase 326245 4114771 Rxyl_0310 Rubrobacter xylanophilus DSM 9941 alkaline phosphatase YP_643098.1 324761 R 266117 CDS YP_643099.1 108803162 4114772 complement(326295..328904) 1 NC_008148.1 KEGG: tac:Ta0686 hypothetical protein; glycogen debranching protein 328904 4114772 Rxyl_0311 Rubrobacter xylanophilus DSM 9941 glycogen debranching protein YP_643099.1 326295 R 266117 CDS YP_643100.1 108803163 4114773 complement(328980..330746) 1 NC_008148.1 PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region dienelactone hydrolase WD40-like beta Propeller; KEGG: hma:rrnAC0178 prolyl oligopeptidase family protein; peptidase S9, prolyl oligopeptidase active site region 330746 4114773 Rxyl_0312 Rubrobacter xylanophilus DSM 9941 peptidase S9, prolyl oligopeptidase active site region YP_643100.1 328980 R 266117 CDS YP_643101.1 108803164 4114774 330934..331299 1 NC_008148.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: syn:slr0423 rare lipoprotein A; rare lipoprotein A 331299 4114774 Rxyl_0313 Rubrobacter xylanophilus DSM 9941 rare lipoprotein A YP_643101.1 330934 D 266117 CDS YP_643102.1 108803165 4114775 331629..333569 1 NC_008148.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: noc:Noc_0829 alpha amylase, catalytic region; alpha amylase 333569 4114775 Rxyl_0314 Rubrobacter xylanophilus DSM 9941 alpha amylase YP_643102.1 331629 D 266117 CDS YP_643103.1 108803166 4114776 333566..336931 1 NC_008148.1 KEGG: noc:Noc_0830 alpha amylase, catalytic region; TIGRFAM: Trehalose synthase-like Trehalose synthase/probable maltokinase-like; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; trehalose synthase-like protein 336931 4114776 Rxyl_0315 Rubrobacter xylanophilus DSM 9941 trehalose synthase-like protein YP_643103.1 333566 D 266117 CDS YP_643104.1 108803167 4114777 336928..339096 1 NC_008148.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 339096 4114777 Rxyl_0316 Rubrobacter xylanophilus DSM 9941 glycogen branching protein YP_643104.1 336928 D 266117 CDS YP_643105.1 108803168 4114778 339187..341334 1 NC_008148.1 KEGG: noc:Noc_1740 glycogen debranching enzyme GlgX; TIGRFAM: Glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; glycogen debranching protein GlgX 341334 4114778 Rxyl_0317 Rubrobacter xylanophilus DSM 9941 glycogen debranching protein GlgX YP_643105.1 339187 D 266117 CDS YP_643106.1 108803169 4114779 341331..343145 1 NC_008148.1 KEGG: tbd:Tbd_1173 alpha amylase, catalytic subdomain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; malto-oligosyltrehalose trehalohydrolase 343145 4114779 Rxyl_0318 Rubrobacter xylanophilus DSM 9941 malto-oligosyltrehalose trehalohydrolase YP_643106.1 341331 D 266117 CDS YP_643107.1 108803170 4114780 343142..345883 1 NC_008148.1 KEGG: tbd:Tbd_1174 alpha amylase, catalytic subdomain; TIGRFAM: Malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; malto-oligosyltrehalose synthase 345883 4114780 Rxyl_0319 Rubrobacter xylanophilus DSM 9941 malto-oligosyltrehalose synthase YP_643107.1 343142 D 266117 CDS YP_643108.1 108803171 4116052 346098..346559 1 NC_008148.1 hypothetical protein 346559 4116052 Rxyl_0320 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643108.1 346098 D 266117 CDS YP_643109.1 108803172 4116053 346682..347332 1 NC_008148.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: mhu:Mhun_2814 UbiE/COQ5 methyltransferase; demethylmenaquinone methyltransferase 347332 4116053 Rxyl_0321 Rubrobacter xylanophilus DSM 9941 demethylmenaquinone methyltransferase YP_643109.1 346682 D 266117 CDS YP_643110.1 108803173 4116054 complement(347310..347684) 1 NC_008148.1 hypothetical protein 347684 4116054 Rxyl_0322 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643110.1 347310 R 266117 CDS YP_643111.1 108803174 4116055 complement(347745..348041) 1 NC_008148.1 hypothetical protein 348041 4116055 Rxyl_0323 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643111.1 347745 R 266117 CDS YP_643112.1 108803175 4116056 348184..348999 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr1637 hypothetical protein; short-chain dehydrogenase/reductase SDR 348999 4116056 Rxyl_0324 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643112.1 348184 D 266117 CDS YP_643113.1 108803176 4116057 complement(349038..349970) 1 NC_008148.1 PFAM: dihydrodipicolinate synthetase; KEGG: bja:blr3884 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase 349970 4116057 Rxyl_0325 Rubrobacter xylanophilus DSM 9941 dihydrodipicolinate synthetase YP_643113.1 349038 R 266117 CDS YP_643114.1 108803177 4116058 complement(349951..350916) 1 NC_008148.1 PFAM: nucleoside recognition; KEGG: gka:GK3080 hypothetical protein; nucleoside recognition protein 350916 4116058 Rxyl_0326 Rubrobacter xylanophilus DSM 9941 nucleoside recognition protein YP_643114.1 349951 R 266117 CDS YP_643115.1 108803178 4116059 complement(350965..353022) 1 NC_008148.1 KEGG: chy:CHY_1100 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif BRCT NAD-dependent DNA ligase zinc-finger, NAD-dependent DNA ligase C4-type NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase 353022 4116059 Rxyl_0327 Rubrobacter xylanophilus DSM 9941 NAD-dependent DNA ligase YP_643115.1 350965 R 266117 CDS YP_643116.1 108803179 4116060 complement(353035..353514) 1 NC_008148.1 KEGG: dge:Dgeo_1195 hypothetical protein; hypothetical protein 353514 4116060 Rxyl_0328 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643116.1 353035 R 266117 CDS YP_643117.1 108803180 4116061 353594..354160 1 NC_008148.1 hypothetical protein 354160 4116061 Rxyl_0329 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643117.1 353594 D 266117 CDS YP_643118.1 108803181 4116062 complement(354157..354471) 1 NC_008148.1 hypothetical protein 354471 4116062 Rxyl_0330 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643118.1 354157 R 266117 CDS YP_643119.1 108803182 4116063 354489..355511 1 NC_008148.1 KEGG: nfa:nfa40670 putative translation initiation factor IF-2; hypothetical protein 355511 4116063 Rxyl_0331 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643119.1 354489 D 266117 CDS YP_643120.1 108803183 4116064 355683..356372 1 NC_008148.1 KEGG: tel:tll1692 lipid transfer protein M30 homolog; hypothetical protein 356372 4116064 Rxyl_0332 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643120.1 355683 D 266117 CDS YP_643121.1 108803184 4116065 356365..357156 1 NC_008148.1 hypothetical protein 357156 4116065 Rxyl_0333 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643121.1 356365 D 266117 CDS YP_643122.1 108803185 4116066 357153..357806 1 NC_008148.1 hypothetical protein 357806 4116066 Rxyl_0334 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643122.1 357153 D 266117 CDS YP_643123.1 108803186 4116067 357803..358264 1 NC_008148.1 PFAM: heat shock protein DnaJ-like; KEGG: xcv:XCV0501 DnaJ-related chaperone; heat shock protein DnaJ-like protein 358264 4116067 Rxyl_0335 Rubrobacter xylanophilus DSM 9941 heat shock protein DnaJ-like protein YP_643123.1 357803 D 266117 CDS YP_643124.1 108803187 4116068 358369..359760 1 NC_008148.1 PFAM: selenium-binding protein; KEGG: reu:Reut_B5039 56kDa selenium binding; selenium-binding protein 359760 4116068 Rxyl_0336 Rubrobacter xylanophilus DSM 9941 selenium-binding protein YP_643124.1 358369 D 266117 CDS YP_643125.1 108803188 4116069 359757..360392 1 NC_008148.1 KEGG: reu:Reut_B5040 hypothetical protein; hypothetical protein 360392 4116069 Rxyl_0337 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643125.1 359757 D 266117 CDS YP_643126.1 108803189 4116070 complement(360389..361012) 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: sth:STH2376 sortase, putative; peptidase C60, sortase A and B 361012 4116070 Rxyl_0338 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_643126.1 360389 R 266117 CDS YP_643127.1 108803190 4116071 361061..361894 1 NC_008148.1 PFAM: phage integrase phage integrase-like SAM-like; KEGG: pca:Pcar_0623 site-specific recombinase, phage integrase family; phage integrase 361894 4116071 Rxyl_0339 Rubrobacter xylanophilus DSM 9941 phage integrase YP_643127.1 361061 D 266117 CDS YP_643128.1 108803191 4115063 361959..362288 1 NC_008148.1 hypothetical protein 362288 4115063 Rxyl_0340 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643128.1 361959 D 266117 CDS YP_643129.1 108803192 4115064 362408..366877 1 NC_008148.1 PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mca:MCA2039 glutamate synthase, large subunit; glutamate synthase (NADH) large subunit 366877 4115064 Rxyl_0341 Rubrobacter xylanophilus DSM 9941 glutamate synthase (NADH) large subunit YP_643129.1 362408 D 266117 CDS YP_643130.1 108803193 4115065 366877..368304 1 NC_008148.1 TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpa:MAP0173 glutamate synthase (NADPH) small chain; glutamate synthase (NADH) small subunit 368304 4115065 Rxyl_0342 Rubrobacter xylanophilus DSM 9941 glutamate synthase (NADH) small subunit YP_643130.1 366877 D 266117 CDS YP_643131.1 108803194 4115066 complement(368305..370032) 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: dra:DR1078 antibiotic biosynthesis protein LmbJ, putative; type 12 methyltransferase 370032 4115066 Rxyl_0343 Rubrobacter xylanophilus DSM 9941 type 12 methyltransferase YP_643131.1 368305 R 266117 CDS YP_643132.1 108803195 4115067 370137..370697 1 NC_008148.1 PFAM: LemA; KEGG: bcl:ABC1505 Listeria epitope LemA; hypothetical protein 370697 4115067 Rxyl_0344 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643132.1 370137 D 266117 CDS YP_643133.1 108803196 4115068 370702..371661 1 NC_008148.1 PFAM: peptidase M48, Ste24p; KEGG: det:DET1587 peptidase, M28 family; HtpX-2 peptidase 371661 4115068 Rxyl_0345 Rubrobacter xylanophilus DSM 9941 HtpX-2 peptidase YP_643133.1 370702 D 266117 CDS YP_643134.1 108803197 4115069 complement(372049..372819) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1683 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 372819 4115069 Rxyl_0346 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643134.1 372049 R 266117 CDS YP_643135.1 108803198 4115070 complement(372838..373440) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: pfo:Pfl_3944 transcriptional regulator, TetR family; TetR family transcriptional regulator 373440 4115070 Rxyl_0347 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_643135.1 372838 R 266117 CDS YP_643136.1 108803199 4115071 373796..374773 1 NC_008148.1 PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit; pyruvate dehydrogenase 374773 4115071 Rxyl_0348 Rubrobacter xylanophilus DSM 9941 pyruvate dehydrogenase YP_643136.1 373796 D 266117 CDS YP_643137.1 108803200 4115072 374792..375784 1 NC_008148.1 PFAM: Transketolase, central region Transketolase-like; KEGG: sso:SSO1526 pyruvate dehydrogenase E1 component, beta subunit; transketolase, central region 375784 4115072 Rxyl_0349 Rubrobacter xylanophilus DSM 9941 transketolase, central region YP_643137.1 374792 D 266117 CDS YP_643138.1 108803201 4115073 375803..376993 1 NC_008148.1 PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: tfu:Tfu_3051 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; dehydrogenase catalytic domain-containing protein 376993 4115073 Rxyl_0350 Rubrobacter xylanophilus DSM 9941 dehydrogenase catalytic domain-containing protein YP_643138.1 375803 D 266117 CDS YP_643139.1 108803202 4115074 377009..378082 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bur:Bcep18194_B1325 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase GroES-like protein 378082 4115074 Rxyl_0351 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_643139.1 377009 D 266117 CDS YP_643140.1 108803203 4115075 378084..378896 1 NC_008148.1 PFAM: putative cyclase; KEGG: cps:CPS_3501 putative cyclase; putative cyclase 378896 4115075 Rxyl_0352 Rubrobacter xylanophilus DSM 9941 putative cyclase YP_643140.1 378084 D 266117 CDS YP_643141.1 108803204 4115076 378906..380468 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa55900 putative acyl-CoA synthetase; AMP-dependent synthetase and ligase 380468 4115076 Rxyl_0353 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_643141.1 378906 D 266117 CDS YP_643142.1 108803205 4115077 complement(380534..380947) 1 NC_008148.1 hypothetical protein 380947 4115077 Rxyl_0354 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643142.1 380534 R 266117 CDS YP_643143.1 108803206 4115078 complement(380944..382359) 1 NC_008148.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative; fumarate reductase/succinate dehydrogenase flavoprotein-like protein 382359 4115078 Rxyl_0355 Rubrobacter xylanophilus DSM 9941 fumarate reductase/succinate dehydrogenase flavoprotein-like protein YP_643143.1 380944 R 266117 CDS YP_643144.1 108803207 4115079 complement(382349..383050) 1 NC_008148.1 hypothetical protein 383050 4115079 Rxyl_0356 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643144.1 382349 R 266117 CDS YP_643145.1 108803208 4115080 complement(383047..384411) 1 NC_008148.1 PFAM: MmgE/PrpD; KEGG: bbr:BB1350 hypothetical protein; MmgE/PrpD 384411 4115080 Rxyl_0357 Rubrobacter xylanophilus DSM 9941 MmgE/PrpD YP_643145.1 383047 R 266117 CDS YP_643146.1 108803209 4115081 complement(384419..385870) 1 NC_008148.1 PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase; dihydropyrimidinase 385870 4115081 Rxyl_0358 Rubrobacter xylanophilus DSM 9941 dihydropyrimidinase YP_643146.1 384419 R 266117 CDS YP_643147.1 108803210 4115082 complement(385904..386605) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sak:SAK_1594 hydrophobic amino acid uptake (HAAT) family ABC transporter, ATP-binding protein LivF; ABC transporter-like protein 386605 4115082 Rxyl_0359 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643147.1 385904 R 266117 CDS YP_643148.1 108803211 4115083 complement(386592..387323) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ape:APE2524 putative branched-chain amino acid transport system ATP-binding protein; ABC transporter-like protein 387323 4115083 Rxyl_0360 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643148.1 386592 R 266117 CDS YP_643149.1 108803212 4115084 complement(387320..388321) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: rpb:RPB_3618 inner-membrane translocator; inner-membrane translocator 388321 4115084 Rxyl_0361 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_643149.1 387320 R 266117 CDS YP_643150.1 108803213 4115085 complement(388321..389211) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: cch:Cag_0852 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 389211 4115085 Rxyl_0362 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_643150.1 388321 R 266117 CDS YP_643151.1 108803214 4115086 complement(389347..390588) 1 NC_008148.1 PFAM: Extracellular ligand-binding receptor; KEGG: ape:APE2521 putative branched-chain amino acid transport system substrate-binding protein; extracellular ligand-binding receptor 390588 4115086 Rxyl_0363 Rubrobacter xylanophilus DSM 9941 extracellular ligand-binding receptor YP_643151.1 389347 R 266117 CDS YP_643152.1 108803215 4115087 390810..391607 1 NC_008148.1 PFAM: regulatory proteins, IclR; KEGG: sth:STH2538 transcriptional regulator; IclR family transcriptional regulator 391607 4115087 Rxyl_0364 Rubrobacter xylanophilus DSM 9941 IclR family transcriptional regulator YP_643152.1 390810 D 266117 CDS YP_643153.1 108803216 4115088 391609..392799 1 NC_008148.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO2032 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 392799 4115088 Rxyl_0365 Rubrobacter xylanophilus DSM 9941 L-carnitine dehydratase/bile acid-inducible protein F YP_643153.1 391609 D 266117 CDS YP_643154.1 108803217 4115089 392796..393656 1 NC_008148.1 PFAM: HpcH/HpaI aldolase; KEGG: bte:BTH_II2226 probable citrate lyase beta subunit; citryl-CoA lyase 393656 4115089 Rxyl_0366 Rubrobacter xylanophilus DSM 9941 citryl-CoA lyase YP_643154.1 392796 D 266117 CDS YP_643155.1 108803218 4115090 393653..394462 1 NC_008148.1 PFAM: putative cyclase; KEGG: eli:ELI_08540 probable polyketide cyclase; putative cyclase 394462 4115090 Rxyl_0367 Rubrobacter xylanophilus DSM 9941 putative cyclase YP_643155.1 393653 D 266117 CDS YP_643156.1 108803219 4115091 394459..395877 1 NC_008148.1 PFAM: MmgE/PrpD; KEGG: bte:BTH_II2225 MmgE/PrpD family superfamily; MmgE/PrpD 395877 4115091 Rxyl_0368 Rubrobacter xylanophilus DSM 9941 MmgE/PrpD YP_643156.1 394459 D 266117 CDS YP_643157.1 108803220 4115092 395886..396809 1 NC_008148.1 PFAM: luciferase-like; KEGG: sma:SAV589 putative F420-dependent dehydrogenase; luciferase-like protein 396809 4115092 Rxyl_0369 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_643157.1 395886 D 266117 CDS YP_643158.1 108803221 4115093 complement(396874..397545) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_2799 TetR/AcrR family transcriptional regulator; TetR family transcriptional regulator 397545 4115093 Rxyl_0370 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_643158.1 396874 R 266117 CDS YP_643159.1 108803222 4115094 397682..399316 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_2411 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 399316 4115094 Rxyl_0371 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_643159.1 397682 D 266117 CDS YP_643160.1 108803223 4115095 399340..400116 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: afu:AF0435 enoyl-CoA hydratase; short chain enoyl-CoA hydratase 400116 4115095 Rxyl_0372 Rubrobacter xylanophilus DSM 9941 short chain enoyl-CoA hydratase YP_643160.1 399340 D 266117 CDS YP_643161.1 108803224 4115096 400127..400894 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: pae:PA2554 3-hydroxyacyl-CoA dehydrogenase; short-chain dehydrogenase/reductase SDR 400894 4115096 Rxyl_0373 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643161.1 400127 D 266117 CDS YP_643162.1 108803225 4115097 400962..402263 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter 402263 4115097 Rxyl_0374 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643162.1 400962 D 266117 CDS YP_643163.1 108803226 4115098 402273..403430 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE0723 putative glutaryl-CoA dehydrogenase precursor; acyl-CoA dehydrogenase-like protein 403430 4115098 Rxyl_0375 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_643163.1 402273 D 266117 CDS YP_643164.1 108803227 4115099 403447..404307 1 NC_008148.1 PFAM: amidohydrolase 2; KEGG: rpb:RPB_1417 amidohydrolase 2; amidohydrolase 2 404307 4115099 Rxyl_0376 Rubrobacter xylanophilus DSM 9941 amidohydrolase 2 YP_643164.1 403447 D 266117 CDS YP_643165.1 108803228 4115100 404478..406298 1 NC_008148.1 PFAM: amidohydrolase; KEGG: mta:Moth_0463 adenine deaminase; adenine deaminase 406298 4115100 Rxyl_0377 Rubrobacter xylanophilus DSM 9941 adenine deaminase YP_643165.1 404478 D 266117 CDS YP_643166.1 108803229 4115101 complement(406295..406999) 1 NC_008148.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: ctc:CTC01130 transcriptional regulatory protein; two component transcriptional regulator 406999 4115101 Rxyl_0378 Rubrobacter xylanophilus DSM 9941 two component transcriptional regulator YP_643166.1 406295 R 266117 CDS YP_643167.1 108803230 4117478 complement(406992..408716) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS; KEGG: sth:STH3307 two-component sensor histidine kinase; multi-sensor signal transduction histidine kinase 408716 4117478 Rxyl_0379 Rubrobacter xylanophilus DSM 9941 multi-sensor signal transduction histidine kinase YP_643167.1 406992 R 266117 CDS YP_643168.1 108803231 4117479 408805..409266 1 NC_008148.1 hypothetical protein 409266 4117479 Rxyl_0380 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643168.1 408805 D 266117 CDS YP_643169.1 108803232 4117480 complement(409263..410363) 1 NC_008148.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: gsu:GSU1690 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase 410363 4117480 Rxyl_0381 Rubrobacter xylanophilus DSM 9941 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase YP_643169.1 409263 R 266117 CDS YP_643170.1 108803233 4117481 complement(410384..411439) 1 NC_008148.1 KEGG: lxx:Lxx07200 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; 2-dehydropantoate 2-reductase 411439 4117481 Rxyl_0382 Rubrobacter xylanophilus DSM 9941 2-dehydropantoate 2-reductase YP_643170.1 410384 R 266117 CDS YP_643171.1 108803234 4117482 411596..412729 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: sco:SCO5681 glycosyl transferase; group 1 glycosyl transferase 412729 4117482 Rxyl_0383 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_643171.1 411596 D 266117 CDS YP_643172.1 108803235 4117483 412726..413721 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; KEGG: lmf:LMOf2365_2525 membrane protein, putative; hypothetical protein 413721 4117483 Rxyl_0384 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643172.1 412726 D 266117 CDS YP_643173.1 108803236 4117484 413718..414488 1 NC_008148.1 KEGG: sth:STH2880 hypothetical protein; hypothetical protein 414488 4117484 Rxyl_0385 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643173.1 413718 D 266117 CDS YP_643174.1 108803237 4117485 complement(415243..416556) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU3264 membrane protein, putative; major facilitator transporter 416556 4117485 Rxyl_0387 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643174.1 415243 R 266117 CDS YP_643175.1 108803238 4117486 complement(416553..417437) 1 NC_008148.1 TIGRFAM: degV family protein; PFAM: DegV; KEGG: deh:cbdb_A1004 DegV family protein; degV family protein 417437 4117486 Rxyl_0388 Rubrobacter xylanophilus DSM 9941 degV family protein YP_643175.1 416553 R 266117 CDS YP_643176.1 108803239 4117487 complement(417636..418268) 1 NC_008148.1 hypothetical protein 418268 4117487 Rxyl_0389 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643176.1 417636 R 266117 CDS YP_643177.1 108803240 4117488 complement(418416..419072) 1 NC_008148.1 PFAM: protein of unknown function DUF205; KEGG: gsu:GSU0507 hypothetical protein; acyl-phosphate glycerol-3-phosphate acyltransferase 419072 4117488 Rxyl_0390 Rubrobacter xylanophilus DSM 9941 acyl-phosphate glycerol-3-phosphate acyltransferase YP_643177.1 418416 R 266117 CDS YP_643178.1 108803241 4117489 419125..419676 1 NC_008148.1 hypothetical protein 419676 4117489 Rxyl_0391 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643178.1 419125 D 266117 CDS YP_643179.1 108803242 4117490 complement(419665..420849) 1 NC_008148.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: bms:BR0546 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase-like protein 420849 4117490 Rxyl_0392 Rubrobacter xylanophilus DSM 9941 oxidoreductase-like protein YP_643179.1 419665 R 266117 CDS YP_643180.1 108803243 4117491 complement(420851..421852) 1 NC_008148.1 PFAM: AP endonuclease 2-like Xylose isomerase-like TIM barrel; KEGG: rba:RB4654 hypothetical protein; xylose isomerase-like protein 421852 4117491 Rxyl_0393 Rubrobacter xylanophilus DSM 9941 xylose isomerase-like protein YP_643180.1 420851 R 266117 CDS YP_643181.1 108803244 4117492 complement(421871..423115) 1 NC_008148.1 PFAM: oxidoreductase-like; KEGG: sme:SMb20013 hypothetical protein; oxidoreductase-like protein 423115 4117492 Rxyl_0394 Rubrobacter xylanophilus DSM 9941 oxidoreductase-like protein YP_643181.1 421871 R 266117 CDS YP_643182.1 108803245 4117493 complement(423128..424075) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_989 sugar ABC transporter (permease); inner-membrane translocator 424075 4117493 Rxyl_0395 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_643182.1 423128 R 266117 CDS YP_643183.1 108803246 4117494 complement(424072..425061) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_991 sugar transport system permease protein homolog; inner-membrane translocator 425061 4117494 Rxyl_0396 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_643183.1 424072 R 266117 CDS YP_643184.1 108803247 4117495 complement(425058..426566) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_992 high affinity ribose transport protein; ABC transporter-like protein 426566 4117495 Rxyl_0397 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643184.1 425058 R 266117 CDS YP_643185.1 108803248 4117496 complement(426569..427666) 1 NC_008148.1 KEGG: atc:AGR_L_993 periplasmic sugar binding protein homolog; periplasmic sugar binding protein-like protein 427666 4117496 Rxyl_0398 Rubrobacter xylanophilus DSM 9941 periplasmic sugar binding protein-like protein YP_643185.1 426569 R 266117 CDS YP_643186.1 108803249 4115220 complement(427722..428930) 1 NC_008148.1 PFAM: ROK; KEGG: lxx:Lxx03030 transcriptional regulator, ROK family; ROK domain-containing protein 428930 4115220 Rxyl_0399 Rubrobacter xylanophilus DSM 9941 ROK domain-containing protein YP_643186.1 427722 R 266117 CDS YP_643187.1 108803250 4115221 429223..430278 1 NC_008148.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 430278 4115221 Rxyl_0400 Rubrobacter xylanophilus DSM 9941 isopentenyl pyrophosphate isomerase YP_643187.1 429223 D 266117 CDS YP_643188.1 108803251 4115222 430304..431368 1 NC_008148.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: eca:ECA1953 putative xylose isomerase; xylose isomerase-like protein 431368 4115222 Rxyl_0401 Rubrobacter xylanophilus DSM 9941 xylose isomerase-like protein YP_643188.1 430304 D 266117 CDS YP_643189.1 108803252 4115223 431365..432861 1 NC_008148.1 KEGG: mta:Moth_2025 xylulokinase; TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; xylulokinase 432861 4115223 Rxyl_0402 Rubrobacter xylanophilus DSM 9941 xylulokinase YP_643189.1 431365 D 266117 CDS YP_643190.1 108803253 4115224 432980..434635 1 NC_008148.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cef:CE1931 putative periplasmic serine protease; peptidase S1 and S6, chymotrypsin/Hap 434635 4115224 Rxyl_0403 Rubrobacter xylanophilus DSM 9941 peptidase S1 and S6, chymotrypsin/Hap YP_643190.1 432980 D 266117 CDS YP_643191.1 108803254 4115225 435009..435254 1 NC_008148.1 hypothetical protein 435254 4115225 Rxyl_0404 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643191.1 435009 D 266117 CDS YP_643192.1 108803255 4115226 435244..436056 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tko:TK2026 ABC-type multidrug transport system, ATPase component; ABC transporter-like protein 436056 4115226 Rxyl_0405 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643192.1 435244 D 266117 CDS YP_643193.1 108803256 4115227 436053..436892 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: ape:APE2512 putative ABC-2 type transport system permease protein; ABC transporter 436892 4115227 Rxyl_0406 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_643193.1 436053 D 266117 CDS YP_643194.1 108803257 4115228 complement(436921..438726) 1 NC_008148.1 PFAM: IucA/IucC; KEGG: ava:Ava_2833 IucA/IucC; IucA/IucC protein 438726 4115228 Rxyl_0407 Rubrobacter xylanophilus DSM 9941 IucA/IucC protein YP_643194.1 436921 R 266117 CDS YP_643195.1 108803258 4115229 complement(438745..440040) 1 NC_008148.1 KEGG: ava:Ava_2835 probable monooxygenase; L-lysine 6-monooxygenase 440040 4115229 Rxyl_0408 Rubrobacter xylanophilus DSM 9941 L-lysine 6-monooxygenase YP_643195.1 438745 R 266117 CDS YP_643196.1 108803259 4115230 complement(440027..440614) 1 NC_008148.1 KEGG: ana:all0393 hypothetical protein; hypothetical protein 440614 4115230 Rxyl_0409 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643196.1 440027 R 266117 CDS YP_643197.1 108803260 4115231 complement(440611..442347) 1 NC_008148.1 PFAM: IucA/IucC; KEGG: ana:all0394 hypothetical protein; IucA/IucC protein 442347 4115231 Rxyl_0410 Rubrobacter xylanophilus DSM 9941 IucA/IucC protein YP_643197.1 440611 R 266117 CDS YP_643198.1 108803261 4115232 complement(443797..445194) 1 NC_008148.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 445194 4115232 Rxyl_0412 Rubrobacter xylanophilus DSM 9941 diaminobutyrate--2-oxoglutarate aminotransferase YP_643198.1 443797 R 266117 CDS YP_643199.1 108803262 4115233 complement(445285..446244) 1 NC_008148.1 PFAM: periplasmic binding protein; KEGG: gka:GK1457 iron(III) dicitrate ABC transporter (lipoprotein); periplasmic binding protein 446244 4115233 Rxyl_0413 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein YP_643199.1 445285 R 266117 CDS YP_643200.1 108803263 4115234 446383..447390 1 NC_008148.1 PFAM: transport system permease protein; KEGG: ana:all2586 iron(III) dicitrate transport system permease protein; transport system permease 447390 4115234 Rxyl_0414 Rubrobacter xylanophilus DSM 9941 transport system permease YP_643200.1 446383 D 266117 CDS YP_643201.1 108803264 4115235 447387..448427 1 NC_008148.1 PFAM: transport system permease protein; KEGG: ana:all2585 iron(III) dicitrate transport system permease protein; transport system permease 448427 4115235 Rxyl_0415 Rubrobacter xylanophilus DSM 9941 transport system permease YP_643201.1 447387 D 266117 CDS YP_643202.1 108803265 4115236 448438..449292 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: syn:slr1318 ABC-type iron(III) dicitrate transport system ATP-binding protein.; ABC transporter-like protein 449292 4115236 Rxyl_0416 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643202.1 448438 D 266117 CDS YP_643203.1 108803266 4115237 449289..450092 1 NC_008148.1 KEGG: fra:Francci3_4381 hypothetical protein; hypothetical protein 450092 4115237 Rxyl_0417 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643203.1 449289 D 266117 CDS YP_643204.1 108803267 4115238 450117..451160 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein; KEGG: cjk:jk1776 putative iron ABC transport system, solute binding protein; twin-arginine translocation pathway signal protein 451160 4115238 Rxyl_0418 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_643204.1 450117 D 266117 CDS YP_643205.1 108803268 4115239 451190..452224 1 NC_008148.1 PFAM: periplasmic binding protein; KEGG: mbo:Mb0271c probable periplasmic iron-transport lipoprotein; periplasmic binding protein 452224 4115239 Rxyl_0419 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein YP_643205.1 451190 D 266117 CDS YP_643206.1 108803269 4115240 452250..452609 1 NC_008148.1 KEGG: fra:Francci3_2469 hypothetical protein; hypothetical protein 452609 4115240 Rxyl_0420 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643206.1 452250 D 266117 CDS YP_643207.1 108803270 4115241 complement(452661..452861) 1 NC_008148.1 PFAM: protein of unknown function DUF466; KEGG: bur:Bcep18194_B0098 protein of unknown function DUF466; hypothetical protein 452861 4115241 Rxyl_0421 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643207.1 452661 R 266117 CDS YP_643208.1 108803271 4115242 complement(452874..454997) 1 NC_008148.1 PFAM: carbon starvation protein CstA; KEGG: fra:Francci3_2468 carbon starvation protein CstA; carbon starvation protein CstA 454997 4115242 Rxyl_0422 Rubrobacter xylanophilus DSM 9941 carbon starvation protein CstA YP_643208.1 452874 R 266117 CDS YP_643209.1 108803272 4115243 complement(455081..455803) 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: sai:Saci_0388 conserved archaeal membrane protein; ABC transporter 455803 4115243 Rxyl_0423 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_643209.1 455081 R 266117 CDS YP_643210.1 108803273 4115244 complement(455793..456743) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ape:APE2579 putative ABC-2 type transport system ATP-binding protein; ABC transporter-like protein 456743 4115244 Rxyl_0424 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643210.1 455793 R 266117 CDS YP_643211.1 108803274 4115245 456903..457787 1 NC_008148.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sma:SAV1542 putative dehydrogenase; 6-phosphogluconate dehydrogenase 457787 4115245 Rxyl_0425 Rubrobacter xylanophilus DSM 9941 6-phosphogluconate dehydrogenase YP_643211.1 456903 D 266117 CDS YP_643212.1 108803275 4115246 complement(457819..459216) 1 NC_008148.1 PFAM: FAD linked oxidase-like Berberine/berberine-like; KEGG: reu:Reut_A1637 FAD linked oxidase, N-terminal; FAD linked oxidase-like protein 459216 4115246 Rxyl_0426 Rubrobacter xylanophilus DSM 9941 FAD linked oxidase-like protein YP_643212.1 457819 R 266117 CDS YP_643213.1 108803276 4115247 complement(459259..460062) 1 NC_008148.1 KEGG: bte:BTH_I2822 hypothetical protein; hypothetical protein 460062 4115247 Rxyl_0427 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643213.1 459259 R 266117 CDS YP_643214.1 108803277 4115248 complement(460129..460749) 1 NC_008148.1 PFAM: protein of unknown function DUF1326; KEGG: rso:RS01737 hypothetical protein; hypothetical protein 460749 4115248 Rxyl_0428 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643214.1 460129 R 266117 CDS YP_643215.1 108803278 4115249 complement(460787..461161) 1 NC_008148.1 KEGG: mlo:mll5389 hypothetical protein; hypothetical protein 461161 4115249 Rxyl_0429 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643215.1 460787 R 266117 CDS YP_643216.1 108803279 4115250 complement(461323..463365) 1 NC_008148.1 KEGG: gvi:glr3133 unknown protein; hypothetical protein 463365 4115250 Rxyl_0430 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643216.1 461323 R 266117 CDS YP_643217.1 108803280 4115251 463575..463829 1 NC_008148.1 hypothetical protein 463829 4115251 Rxyl_0431 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643217.1 463575 D 266117 CDS YP_643218.1 108803281 4115252 463834..464193 1 NC_008148.1 PFAM: protein of unknown function DUF498; KEGG: bta:533224 hypothetical LOC533224; hypothetical protein 464193 4115252 Rxyl_0432 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643218.1 463834 D 266117 CDS YP_643219.1 108803282 4115253 complement(464412..464858) 1 NC_008148.1 hypothetical protein 464858 4115253 Rxyl_0433 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643219.1 464412 R 266117 CDS YP_643220.1 108803283 4115254 464930..465442 1 NC_008148.1 hypothetical protein 465442 4115254 Rxyl_0434 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643220.1 464930 D 266117 CDS YP_643221.1 108803284 4115255 complement(465439..465708) 1 NC_008148.1 PFAM: ferredoxin; KEGG: tel:tsl1009 ferredoxin I; ferredoxin 465708 4115255 Rxyl_0435 Rubrobacter xylanophilus DSM 9941 ferredoxin YP_643221.1 465439 R 266117 CDS YP_643222.1 108803285 4115256 complement(465816..468224) 1 NC_008148.1 PFAM: Rubredoxin-type Fe(Cys)4 protein UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein 468224 4115256 Rxyl_0436 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643222.1 465816 R 266117 CDS YP_643223.1 108803286 4115257 complement(468493..469764) 1 NC_008148.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ava:Ava_2049 hypothetical protein; hypothetical protein 469764 4115257 Rxyl_0437 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643223.1 468493 R 266117 CDS YP_643224.1 108803287 4115258 complement(469776..470513) 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: det:DET0814 ABC transporter, permease protein; ABC transporter 470513 4115258 Rxyl_0438 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_643224.1 469776 R 266117 CDS YP_643225.1 108803288 4116601 complement(470510..471361) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: chy:CHY_0900 daunorubicin resistance ABC transporter, ATP-binding protein; ABC transporter-like protein 471361 4116601 Rxyl_0439 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643225.1 470510 R 266117 CDS YP_643226.1 108803289 4116602 complement(471349..471972) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: sth:STH2255 TetR family transcriptional regulator; TetR family transcriptional regulator 471972 4116602 Rxyl_0440 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_643226.1 471349 R 266117 CDS YP_643227.1 108803290 4116603 472116..474092 1 NC_008148.1 PFAM: Amylo-alpha-1,6-glucosidase; KEGG: sco:SCO7493 hypothetical protein; amylo-alpha-1,6-glucosidase 474092 4116603 Rxyl_0441 Rubrobacter xylanophilus DSM 9941 amylo-alpha-1,6-glucosidase YP_643227.1 472116 D 266117 CDS YP_643228.1 108803291 4116604 474125..474370 1 NC_008148.1 hypothetical protein 474370 4116604 Rxyl_0442 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643228.1 474125 D 266117 CDS YP_643229.1 108803292 4116605 complement(474375..475544) 1 NC_008148.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap Colicin V production protein; KEGG: fra:Francci3_4292 colicin V production protein; peptidase S1 and S6, chymotrypsin/Hap 475544 4116605 Rxyl_0443 Rubrobacter xylanophilus DSM 9941 peptidase S1 and S6, chymotrypsin/Hap YP_643229.1 474375 R 266117 CDS YP_643230.1 108803293 4116606 475594..476661 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM; KEGG: gka:GK1174 hypothetical protein; hypothetical protein 476661 4116606 Rxyl_0444 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643230.1 475594 D 266117 CDS YP_643231.1 108803294 4116607 476658..477137 1 NC_008148.1 PFAM: membrane-flanked domain; KEGG: bha:BH1720 hypothetical protein; membrane-flanked domain-containing protein 477137 4116607 Rxyl_0445 Rubrobacter xylanophilus DSM 9941 membrane-flanked domain-containing protein YP_643231.1 476658 D 266117 CDS YP_643232.1 108803295 4116608 477127..478623 1 NC_008148.1 PFAM: membrane-flanked domain; KEGG: bld:BLi00548 YdbT; membrane-flanked domain-containing protein 478623 4116608 Rxyl_0446 Rubrobacter xylanophilus DSM 9941 membrane-flanked domain-containing protein YP_643232.1 477127 D 266117 CDS YP_643233.1 108803296 4116609 complement(478592..479491) 1 NC_008148.1 PFAM: metallophosphoesterase; KEGG: syn:sll0222 alkaline phosphatase; alkaline phosphatase 479491 4116609 Rxyl_0447 Rubrobacter xylanophilus DSM 9941 alkaline phosphatase YP_643233.1 478592 R 266117 CDS YP_643234.1 108803297 4116610 complement(479590..482457) 1 NC_008148.1 PFAM: SMC protein-like; KEGG: mka:MK0690 SMC1-family ATPase involved in DNA repair; SMC protein-like protein 482457 4116610 Rxyl_0448 Rubrobacter xylanophilus DSM 9941 SMC protein-like protein YP_643234.1 479590 R 266117 CDS YP_643235.1 108803298 4116611 complement(482454..483518) 1 NC_008148.1 PFAM: metallophosphoesterase; KEGG: mka:MK0691 DNA repair exonuclease of the SbcD/Mre11-family; metallophosphoesterase 483518 4116611 Rxyl_0449 Rubrobacter xylanophilus DSM 9941 metallophosphoesterase YP_643235.1 482454 R 266117 CDS YP_643236.1 108803299 4116612 complement(483675..484454) 1 NC_008148.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: bbr:BB2891 putative lipoate-protein ligase A; biotin/lipoate A/B protein ligase 484454 4116612 Rxyl_0450 Rubrobacter xylanophilus DSM 9941 biotin/lipoate A/B protein ligase YP_643236.1 483675 R 266117 CDS YP_643237.1 108803300 4116613 complement(484451..484729) 1 NC_008148.1 KEGG: bbr:BB2890 hypothetical protein; hypothetical protein 484729 4116613 Rxyl_0451 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643237.1 484451 R 266117 CDS YP_643238.1 108803301 4116614 complement(484731..486779) 1 NC_008148.1 KEGG: tth:TTC1879 hypothetical cytosolic protein; hypothetical protein 486779 4116614 Rxyl_0452 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643238.1 484731 R 266117 CDS YP_643239.1 108803302 4116615 complement(486788..487906) 1 NC_008148.1 hypothetical protein 487906 4116615 Rxyl_0453 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643239.1 486788 R 266117 CDS YP_643240.1 108803303 4116616 complement(487940..488482) 1 NC_008148.1 hypothetical protein 488482 4116616 Rxyl_0454 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643240.1 487940 R 266117 CDS YP_643241.1 108803304 4116617 complement(488509..489888) 1 NC_008148.1 PFAM: peptidase M20 peptidase dimerisation; KEGG: tth:TTC0765 hypothetical protein; peptidase M20 489888 4116617 Rxyl_0455 Rubrobacter xylanophilus DSM 9941 peptidase M20 YP_643241.1 488509 R 266117 CDS YP_643242.1 108803305 4116618 489968..490459 1 NC_008148.1 hypothetical protein 490459 4116618 Rxyl_0456 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643242.1 489968 D 266117 CDS YP_643243.1 108803306 4116619 490587..491282 1 NC_008148.1 hypothetical protein 491282 4116619 Rxyl_0457 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643243.1 490587 D 266117 CDS YP_643244.1 108803307 4116620 491375..491899 1 NC_008148.1 PFAM: Allergen V5/Tpx-1 related; KEGG: mta:Moth_1705 allergen V5/TPX-1 related; allergen V5/Tpx-1-like protein 491899 4116620 Rxyl_0458 Rubrobacter xylanophilus DSM 9941 allergen V5/Tpx-1-like protein YP_643244.1 491375 D 266117 CDS YP_643245.1 108803308 4116426 complement(491982..492788) 1 NC_008148.1 PFAM: Creatininase; KEGG: blo:BL0014 creatinine amidohydrolase; creatininase; creatininase 492788 4116426 Rxyl_0459 Rubrobacter xylanophilus DSM 9941 creatininase YP_643245.1 491982 R 266117 CDS YP_643246.1 108803309 4116427 complement(492878..494386) 1 NC_008148.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bja:bll3347 unknown protein; cytosine/purines uracil thiamine allantoin permease 494386 4116427 Rxyl_0460 Rubrobacter xylanophilus DSM 9941 cytosine/purines uracil thiamine allantoin permease YP_643246.1 492878 R 266117 CDS YP_643247.1 108803310 4116428 complement(494510..495769) 1 NC_008148.1 PFAM: creatinase peptidase M24; KEGG: ppu:PP3667 creatinase; creatinase 495769 4116428 Rxyl_0461 Rubrobacter xylanophilus DSM 9941 creatinase YP_643247.1 494510 R 266117 CDS YP_643248.1 108803311 4116429 complement(495838..496974) 1 NC_008148.1 TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: gka:GK0623 glycine oxidase; glycine oxidase 496974 4116429 Rxyl_0462 Rubrobacter xylanophilus DSM 9941 glycine oxidase YP_643248.1 495838 R 266117 CDS YP_643249.1 108803312 4116430 complement(496971..497954) 1 NC_008148.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 497954 4116430 Rxyl_0463 Rubrobacter xylanophilus DSM 9941 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_643249.1 496971 R 266117 CDS YP_643250.1 108803313 4116431 complement(497983..499293) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: ppu:PP3666 metabolite MFS transporter, MHS family; general substrate transporter 499293 4116431 Rxyl_0464 Rubrobacter xylanophilus DSM 9941 general substrate transporter YP_643250.1 497983 R 266117 CDS YP_643251.1 108803314 4116432 complement(499478..500284) 1 NC_008148.1 PFAM: regulatory proteins, IclR; KEGG: mlo:mlr8761 hypothetical protein; IclR family transcriptional regulator 500284 4116432 Rxyl_0465 Rubrobacter xylanophilus DSM 9941 IclR family transcriptional regulator YP_643251.1 499478 R 266117 CDS YP_643252.1 108803315 4116433 complement(500453..501808) 1 NC_008148.1 TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: peptidase dimerisation; KEGG: eli:ELI_13895 hypothetical protein; peptidase M20D, amidohydrolase 501808 4116433 Rxyl_0466 Rubrobacter xylanophilus DSM 9941 peptidase M20D, amidohydrolase YP_643252.1 500453 R 266117 CDS YP_643253.1 108803316 4116434 complement(501827..503131) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_1596 putative proline/betaine transporter; general substrate transporter 503131 4116434 Rxyl_0467 Rubrobacter xylanophilus DSM 9941 general substrate transporter YP_643253.1 501827 R 266117 CDS YP_643254.1 108803317 4116435 complement(503202..504518) 1 NC_008148.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 504518 4116435 Rxyl_0468 Rubrobacter xylanophilus DSM 9941 amidase YP_643254.1 503202 R 266117 CDS YP_643255.1 108803318 4116436 complement(504667..506091) 1 NC_008148.1 PFAM: glycine hydroxymethyltransferase aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase class-III; KEGG: tfu:Tfu_2353 glycine hydroxymethyltransferase; serine hydroxymethyltransferase 506091 4116436 Rxyl_0469 Rubrobacter xylanophilus DSM 9941 serine hydroxymethyltransferase YP_643255.1 504667 R 266117 CDS YP_643256.1 108803319 4116437 506265..507587 1 NC_008148.1 KEGG: mlo:mlr4790 aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); aminomethyltransferase 507587 4116437 Rxyl_0470 Rubrobacter xylanophilus DSM 9941 aminomethyltransferase YP_643256.1 506265 D 266117 CDS YP_643257.1 108803320 4116438 507584..508915 1 NC_008148.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 508915 solA 4116438 solA Rubrobacter xylanophilus DSM 9941 N-methyltryptophan oxidase YP_643257.1 507584 D 266117 CDS YP_643258.1 108803321 4116439 complement(508958..509227) 1 NC_008148.1 hypothetical protein 509227 4116439 Rxyl_0472 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643258.1 508958 R 266117 CDS YP_643259.1 108803322 4116440 complement(509280..511361) 1 NC_008148.1 catalyzes the formation of catechol from phenol; phenol 2-monooxygenase 511361 4116440 Rxyl_0473 Rubrobacter xylanophilus DSM 9941 phenol 2-monooxygenase YP_643259.1 509280 R 266117 CDS YP_643260.1 108803323 4116441 511602..512483 1 NC_008148.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ava:Ava_0824 transcriptional regulator, LysR family; LysR family transcriptional regulator 512483 4116441 Rxyl_0474 Rubrobacter xylanophilus DSM 9941 LysR family transcriptional regulator YP_643260.1 511602 D 266117 CDS YP_643261.1 108803324 4116442 complement(512480..513082) 1 NC_008148.1 hypothetical protein 513082 4116442 Rxyl_0475 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643261.1 512480 R 266117 CDS YP_643262.1 108803325 4116443 513233..513475 1 NC_008148.1 KEGG: ade:Adeh_0959 hypothetical protein; hypothetical protein 513475 4116443 Rxyl_0476 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643262.1 513233 D 266117 CDS YP_643263.1 108803326 4116444 513493..514392 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: sco:SCO6189 transferase; glycosyl transferase family protein 514392 4116444 Rxyl_0477 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_643263.1 513493 D 266117 CDS YP_643264.1 108803327 4114663 514403..515431 1 NC_008148.1 PFAM: histone deacetylase superfamily; KEGG: mka:MK1055 predicted deacetylase; histone deacetylase superfamily protein 515431 4114663 Rxyl_0478 Rubrobacter xylanophilus DSM 9941 histone deacetylase superfamily protein YP_643264.1 514403 D 266117 CDS YP_643265.1 108803328 4114664 515506..515922 1 NC_008148.1 PFAM: protein of unknown function DUF101; KEGG: ttj:TTHA1745 hypothetical protein; hypothetical protein 515922 4114664 Rxyl_0479 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643265.1 515506 D 266117 CDS YP_643266.1 108803329 4114665 515915..517369 1 NC_008148.1 PFAM: protein of unknown function UPF0027; KEGG: tth:TTC1426 RtcB protein; hypothetical protein 517369 4114665 Rxyl_0480 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643266.1 515915 D 266117 CDS YP_643267.1 108803330 4114666 517372..518043 1 NC_008148.1 PFAM: phosphoribosyltransferase; KEGG: ava:Ava_4124 phosphoribosyltransferase; phosphoribosyltransferase 518043 4114666 Rxyl_0481 Rubrobacter xylanophilus DSM 9941 phosphoribosyltransferase YP_643267.1 517372 D 266117 CDS YP_643268.1 108803331 4114667 518040..518702 1 NC_008148.1 PFAM: dienelactone hydrolase; KEGG: eba:ebA2870 hypothetical protein; dienelactone hydrolase 518702 4114667 Rxyl_0482 Rubrobacter xylanophilus DSM 9941 dienelactone hydrolase YP_643268.1 518040 D 266117 CDS YP_643269.1 108803332 4114668 518708..519691 1 NC_008148.1 KEGG: dps:DP2296 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); poly-gamma-glutamate synthesis protein 519691 4114668 Rxyl_0483 Rubrobacter xylanophilus DSM 9941 poly-gamma-glutamate synthesis protein YP_643269.1 518708 D 266117 CDS YP_643270.1 108803333 4114669 complement(519688..520680) 1 NC_008148.1 PFAM: luciferase-like; KEGG: mpa:MAP3120c hypothetical protein; luciferase-like protein 520680 4114669 Rxyl_0484 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_643270.1 519688 R 266117 CDS YP_643271.1 108803334 4114670 complement(520718..521440) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: pca:Pcar_2717 hypothetical protein; beta-lactamase-like protein 521440 4114670 Rxyl_0485 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_643271.1 520718 R 266117 CDS YP_643272.1 108803335 4114671 complement(521437..523161) 1 NC_008148.1 PFAM: PHP-like; SMART: DNA polymerase X Phosphoesterase PHP-like Helix-hairpin-helix DNA-binding, class 1; KEGG: cbu:CBU_0490 hypothetical DNA polymerase / putative histidinol phosphatase; PHP-like protein 523161 4114671 Rxyl_0486 Rubrobacter xylanophilus DSM 9941 PHP-like protein YP_643272.1 521437 R 266117 CDS YP_643273.1 108803336 4114672 complement(523163..523891) 1 NC_008148.1 PFAM: protein of unknown function DUF72; KEGG: sru:SRU_0463 protein of unknown function superfamily; hypothetical protein 523891 4114672 Rxyl_0487 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643273.1 523163 R 266117 CDS YP_643274.1 108803337 4114673 complement(523971..524438) 1 NC_008148.1 KEGG: sco:SCP1.90c putative atp/gtp-binding protein; kinase-like protein 524438 4114673 Rxyl_0488 Rubrobacter xylanophilus DSM 9941 kinase-like protein YP_643274.1 523971 R 266117 CDS YP_643275.1 108803338 4114674 524527..525195 1 NC_008148.1 PFAM: protein of unknown function DUF159; KEGG: ava:Ava_3892 protein of unknown function DUF159; hypothetical protein 525195 4114674 Rxyl_0489 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643275.1 524527 D 266117 CDS YP_643276.1 108803339 4114675 525195..526103 1 NC_008148.1 PFAM: Indigoidine synthase A like protein; KEGG: tte:TTE0327 uncharacterized enzyme involved in pigment biosynthesis; indigoidine synthase A like protein 526103 4114675 Rxyl_0490 Rubrobacter xylanophilus DSM 9941 indigoidine synthase A like protein YP_643276.1 525195 D 266117 CDS YP_643277.1 108803340 4114676 526100..527011 1 NC_008148.1 PFAM: PfkB; KEGG: tfu:Tfu_2129 putative sugar kinase; PfkB protein 527011 4114676 Rxyl_0491 Rubrobacter xylanophilus DSM 9941 PfkB protein YP_643277.1 526100 D 266117 CDS YP_643278.1 108803341 4114677 527042..529306 1 NC_008148.1 KEGG: tel:tll0627 hypothetical protein; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL PAS fold-3 PAS fold; SMART: PAS PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 529306 4114677 Rxyl_0492 Rubrobacter xylanophilus DSM 9941 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_643278.1 527042 D 266117 CDS YP_643279.1 108803342 4114678 complement(529311..530285) 1 NC_008148.1 PFAM: Terpene synthase, metal-binding; KEGG: ava:Ava_1982 terpene synthase, metal-binding; Terpene synthase, metal-binding protein 530285 4114678 Rxyl_0493 Rubrobacter xylanophilus DSM 9941 Terpene synthase, metal-binding protein YP_643279.1 529311 R 266117 CDS YP_643280.1 108803343 4114679 complement(530406..531362) 1 NC_008148.1 PFAM: aldo/keto reductase; KEGG: syn:slr0545 auxin-induced protein; aldo/keto reductase 531362 4114679 Rxyl_0494 Rubrobacter xylanophilus DSM 9941 aldo/keto reductase YP_643280.1 530406 R 266117 CDS YP_643281.1 108803344 4114680 complement(531359..532342) 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: cya:CYA_1156 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein domain-containing protein 532342 4114680 Rxyl_0495 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_643281.1 531359 R 266117 CDS YP_643282.1 108803345 4114681 532535..533887 1 NC_008148.1 PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase; serine/threonine protein kinase 533887 4114681 Rxyl_0496 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_643282.1 532535 D 266117 CDS YP_643283.1 108803346 4114682 complement(533894..534337) 1 NC_008148.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein 534337 4114682 Rxyl_0497 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643283.1 533894 R 266117 CDS YP_643284.1 108803347 4116757 complement(534359..534844) 1 NC_008148.1 hypothetical protein 534844 4116757 Rxyl_0498 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643284.1 534359 R 266117 CDS YP_643285.1 108803348 4116758 534936..535295 1 NC_008148.1 hypothetical protein 535295 4116758 Rxyl_0499 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643285.1 534936 D 266117 CDS YP_643286.1 108803349 4116759 complement(535292..536020) 1 NC_008148.1 TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sao:SAOUHSC_01991 ABC transporter, permease protein, putative; amino acid ABC transporter permease 536020 4116759 Rxyl_0500 Rubrobacter xylanophilus DSM 9941 amino acid ABC transporter permease YP_643286.1 535292 R 266117 CDS YP_643287.1 108803350 4116760 complement(536044..536889) 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 3; SMART: Ionotropic glutamate receptor; KEGG: chy:CHY_0504 glutamine ABC transporter, glutamine-binding protein; extracellular solute-binding protein 536889 4116760 Rxyl_0501 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_643287.1 536044 R 266117 CDS YP_643288.1 108803351 4116761 complement(537013..537747) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: dde:Dde_1428 ATPase; ABC transporter-like protein 537747 4116761 Rxyl_0502 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643288.1 537013 R 266117 CDS YP_643289.1 108803352 4116762 537835..538485 1 NC_008148.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: syf:Synpcc7942_2543 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 538485 4116762 Rxyl_0503 Rubrobacter xylanophilus DSM 9941 phage SPO1 DNA polymerase-like protein YP_643289.1 537835 D 266117 CDS YP_643290.1 108803353 4116763 538472..539575 1 NC_008148.1 PFAM: glucose sorbosone dehydrogenase; KEGG: cbu:CBU_0368 hypothetical protein; glucose sorbosone dehydrogenase 539575 4116763 Rxyl_0504 Rubrobacter xylanophilus DSM 9941 glucose sorbosone dehydrogenase YP_643290.1 538472 D 266117 CDS YP_643291.1 108803354 4116764 539678..540739 1 NC_008148.1 SMART: regulatory proteins, AsnC/Lrp; KEGG: tdn:Tmden_1976 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 540739 4116764 Rxyl_0505 Rubrobacter xylanophilus DSM 9941 AsnC family transcriptional regulator YP_643291.1 539678 D 266117 CDS YP_643292.1 108803355 4116765 540752..541486 1 NC_008148.1 PFAM: protein of unknown function DUF81; KEGG: rpb:RPB_1485 protein of unknown function DUF81; hypothetical protein 541486 4116765 Rxyl_0506 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643292.1 540752 D 266117 CDS YP_643293.1 108803356 4116766 541560..542912 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS00896 probable transport transmembrane protein; major facilitator transporter 542912 4116766 Rxyl_0507 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643293.1 541560 D 266117 CDS YP_643294.1 108803357 4116767 complement(542902..543639) 1 NC_008148.1 TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: bte:BTH_II0507 haloacid dehalogenase, type II; haloacid dehalogenase I 543639 4116767 Rxyl_0508 Rubrobacter xylanophilus DSM 9941 haloacid dehalogenase I YP_643294.1 542902 R 266117 CDS YP_643295.1 108803358 4116768 543735..544067 1 NC_008148.1 PFAM: conserved hypothetical protein 103; KEGG: mta:Moth_0028 hypothetical protein; hypothetical protein 544067 4116768 Rxyl_0509 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643295.1 543735 D 266117 CDS YP_643296.1 108803359 4116769 544081..544680 1 NC_008148.1 KEGG: lxx:Lxx03440 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: RecR protein TOPRIM; SMART: Toprim subdomain; DNA replication and repair protein RecR 544680 4116769 Rxyl_0510 Rubrobacter xylanophilus DSM 9941 DNA replication and repair protein RecR YP_643296.1 544081 D 266117 CDS YP_643297.1 108803360 4116770 544718..546937 1 NC_008148.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: deh:cbdb_A928 ATP-dependent RNA helicase, DEAD; DEAD/DEAH box helicase 546937 4116770 Rxyl_0511 Rubrobacter xylanophilus DSM 9941 DEAD/DEAH box helicase YP_643297.1 544718 D 266117 CDS YP_643298.1 108803361 4116771 546934..547398 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; KEGG: mka:MK1390 predicted Rossmann fold nucleotide-binding protein; hypothetical protein 547398 4116771 Rxyl_0512 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643298.1 546934 D 266117 CDS YP_643299.1 108803362 4116772 547428..548129 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr0293 probable carbonyl reductase; short-chain dehydrogenase/reductase SDR 548129 4116772 Rxyl_0513 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643299.1 547428 D 266117 CDS YP_643300.1 108803363 4116773 548215..548835 1 NC_008148.1 KEGG: sth:STH2141 alkaline phosphatase; alkaline phosphatase 548835 4116773 Rxyl_0514 Rubrobacter xylanophilus DSM 9941 alkaline phosphatase YP_643300.1 548215 D 266117 CDS YP_643301.1 108803364 4116774 548832..549704 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: tfu:Tfu_0079 similar to hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein domain-containing protein 549704 4116774 Rxyl_0515 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_643301.1 548832 D 266117 CDS YP_643302.1 108803365 4116775 549704..550480 1 NC_008148.1 KEGG: mta:Moth_1083 hypothetical protein; hypothetical protein 550480 4116775 Rxyl_0516 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643302.1 549704 D 266117 CDS YP_643303.1 108803366 4116289 complement(550489..551664) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: ava:Ava_0244 major facilitator superfamily MFS_1; major facilitator transporter 551664 4116289 Rxyl_0517 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643303.1 550489 R 266117 CDS YP_643304.1 108803367 4116290 complement(551719..551967) 1 NC_008148.1 PFAM: protein of unknown function DUF190; KEGG: mta:Moth_0526 protein of unknown function DUF190; hypothetical protein 551967 4116290 Rxyl_0518 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643304.1 551719 R 266117 CDS YP_643305.1 108803368 4116291 complement(551970..552566) 1 NC_008148.1 hypothetical protein 552566 4116291 Rxyl_0519 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643305.1 551970 R 266117 CDS YP_643306.1 108803369 4116292 complement(552566..553228) 1 NC_008148.1 KEGG: sma:SAV1204 putative IS630 family transposase; hypothetical protein 553228 4116292 Rxyl_0520 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643306.1 552566 R 266117 CDS YP_643307.1 108803370 4116293 complement(553225..553557) 1 NC_008148.1 PFAM: protein of unknown function DUF190; KEGG: ttj:TTHA0334 hypothetical protein; hypothetical protein 553557 4116293 Rxyl_0521 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643307.1 553225 R 266117 CDS YP_643308.1 108803371 4116294 complement(553554..553928) 1 NC_008148.1 PFAM: Camphor resistance CrcB protein; KEGG: tth:TTC1648 integral membrane protein; camphor resistance protein CrcB 553928 4116294 Rxyl_0522 Rubrobacter xylanophilus DSM 9941 camphor resistance protein CrcB YP_643308.1 553554 R 266117 CDS YP_643309.1 108803372 4116295 complement(553929..554606) 1 NC_008148.1 PFAM: Camphor resistance CrcB protein; KEGG: hch:HCH_02448 integral membrane protein possibly involved in chromosome condensation; camphor resistance CrcB protein 554606 4116295 Rxyl_0523 Rubrobacter xylanophilus DSM 9941 camphor resistance CrcB protein YP_643309.1 553929 R 266117 CDS YP_643310.1 108803373 4116296 554886..555290 1 NC_008148.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa7500 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 555290 4116296 Rxyl_0524 Rubrobacter xylanophilus DSM 9941 pyridoxamine 5'-phosphate oxidase-like protein YP_643310.1 554886 D 266117 CDS YP_643311.1 108803374 4116297 complement(555298..555828) 1 NC_008148.1 PFAM: transcriptional regulator PadR-like; KEGG: deh:cbdb_A1083 putative transcriptional regulator, PadR-like family; PadR family transcriptional regulator 555828 4116297 Rxyl_0525 Rubrobacter xylanophilus DSM 9941 PadR family transcriptional regulator YP_643311.1 555298 R 266117 CDS YP_643312.1 108803375 4116298 555947..556927 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1672 putative D-amino acid oxidase; D-amino acid oxidase 556927 4116298 Rxyl_0526 Rubrobacter xylanophilus DSM 9941 D-amino acid oxidase YP_643312.1 555947 D 266117 CDS YP_643313.1 108803376 4116299 557027..557785 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_2304 GntR-like; GntR family transcriptional regulator 557785 4116299 Rxyl_0527 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643313.1 557027 D 266117 CDS YP_643314.1 108803377 4116300 557803..558756 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: gsu:GSU2769 metallo-beta-lactamase family protein; beta-lactamase-like protein 558756 4116300 Rxyl_0528 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_643314.1 557803 D 266117 CDS YP_643315.1 108803378 4116301 558830..559675 1 NC_008148.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB201 sugar phosphate isomerase/epimerase; xylose isomerase-like protein 559675 4116301 Rxyl_0529 Rubrobacter xylanophilus DSM 9941 xylose isomerase-like protein YP_643315.1 558830 D 266117 CDS YP_643316.1 108803379 4116302 559688..560794 1 NC_008148.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: rba:RB7494 probable NADH-dependent dyhydrogenase related protein; oxidoreductase-like protein 560794 4116302 Rxyl_0530 Rubrobacter xylanophilus DSM 9941 oxidoreductase-like protein YP_643316.1 559688 D 266117 CDS YP_643317.1 108803380 4116303 560781..561533 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR Insect alcohol dehydrogenase family; KEGG: sco:SCO0365 probable oxidoreductase (secreted protein); short-chain dehydrogenase/reductase SDR 561533 4116303 Rxyl_0531 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643317.1 560781 D 266117 CDS YP_643318.1 108803381 4116304 561533..562660 1 NC_008148.1 KEGG: sco:SCO0366 hypothetical protein; hypothetical protein 562660 4116304 Rxyl_0532 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643318.1 561533 D 266117 CDS YP_643319.1 108803382 4116305 562657..563793 1 NC_008148.1 PFAM: amidohydrolase 2; KEGG: bja:bll7907 hypothetical protein; amidohydrolase 2 563793 4116305 Rxyl_0533 Rubrobacter xylanophilus DSM 9941 amidohydrolase 2 YP_643319.1 562657 D 266117 CDS YP_643320.1 108803383 4116306 563793..564164 1 NC_008148.1 PFAM: Rieske [2Fe-2S] region; KEGG: mpa:MAP0741c hypothetical protein; Rieske (2Fe-2S) domain-containing protein 564164 4116306 Rxyl_0534 Rubrobacter xylanophilus DSM 9941 Rieske (2Fe-2S) domain-containing protein YP_643320.1 563793 D 266117 CDS YP_643321.1 108803384 4116307 564168..564404 1 NC_008148.1 hypothetical protein 564404 4116307 Rxyl_0535 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643321.1 564168 D 266117 CDS YP_643322.1 108803385 4116308 564451..567138 1 NC_008148.1 PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: bmb:BruAb2_0426 hydrolase, UxaA family; D-galactarate dehydratase/Altronate hydrolase-like protein 567138 4116308 Rxyl_0536 Rubrobacter xylanophilus DSM 9941 D-galactarate dehydratase/Altronate hydrolase-like protein YP_643322.1 564451 D 266117 CDS YP_643323.1 108803386 4116153 complement(567143..567913) 1 NC_008148.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_0161 2-deoxy-D-gluconate 3-dehydrogenase; 2-deoxy-D-gluconate 3-dehydrogenase 567913 4116153 Rxyl_0537 Rubrobacter xylanophilus DSM 9941 2-deoxy-D-gluconate 3-dehydrogenase YP_643323.1 567143 R 266117 CDS YP_643324.1 108803387 4116154 complement(567915..568403) 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: reu:Reut_A0381 hypothetical protein; cupin 2 barrel domain-containing protein 568403 4116154 Rxyl_0538 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_643324.1 567915 R 266117 CDS YP_643325.1 108803388 4116155 568535..569278 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_2304 GntR-like; GntR family transcriptional regulator 569278 4116155 Rxyl_0539 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643325.1 568535 D 266117 CDS YP_643326.1 108803389 4116156 569271..570092 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: nph:NP3970A hydrolase (probable hydroxyacylglutathione hydrolase) 3; beta-lactamase-like protein 570092 4116156 Rxyl_0540 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_643326.1 569271 D 266117 CDS YP_643327.1 108803390 4116157 570142..570897 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 570897 4116157 Rxyl_0541 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643327.1 570142 D 266117 CDS YP_643328.1 108803391 4116158 570910..571278 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: hma:rrnAC3415 hypothetical protein; cupin 2 barrel domain-containing protein 571278 4116158 Rxyl_0542 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_643328.1 570910 D 266117 CDS YP_643329.1 108803392 4116159 571275..572318 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bja:blr3675 putative alcohol dehydrogenase; alcohol dehydrogenase GroES-like protein 572318 4116159 Rxyl_0543 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_643329.1 571275 D 266117 CDS YP_643330.1 108803393 4116160 complement(572584..574032) 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: bsu:BG11159 aldehyde dehydrogenase; aldehyde dehydrogenase 574032 4116160 Rxyl_0544 Rubrobacter xylanophilus DSM 9941 aldehyde dehydrogenase YP_643330.1 572584 R 266117 CDS YP_643331.1 108803394 4116161 complement(574098..574916) 1 NC_008148.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rba:RB8851 probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomaerase; fumarylacetoacetate (FAA) hydrolase 574916 4116161 Rxyl_0545 Rubrobacter xylanophilus DSM 9941 fumarylacetoacetate (FAA) hydrolase YP_643331.1 574098 R 266117 CDS YP_643332.1 108803395 4116162 575052..575945 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: tfu:Tfu_2040 similar to Zn-dependent hydrolase including glyoxylases; beta-lactamase-like protein 575945 4116162 Rxyl_0546 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_643332.1 575052 D 266117 CDS YP_643333.1 108803396 4116163 575970..577172 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: hma:rrnAC0575 mandelate racemase/muconate lactonizing enzyme family; mandelate racemase/muconate lactonizing-like protein 577172 4116163 Rxyl_0547 Rubrobacter xylanophilus DSM 9941 mandelate racemase/muconate lactonizing-like protein YP_643333.1 575970 D 266117 CDS YP_643334.1 108803397 4116164 complement(577169..577969) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tfu:Tfu_1921 ABC-type sugar transport system ATPase component; ABC transporter-like protein 577969 4116164 Rxyl_0548 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643334.1 577169 R 266117 CDS YP_643335.1 108803398 4116165 complement(577966..578970) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: sai:Saci_2121 membrane protein; inner-membrane translocator 578970 4116165 Rxyl_0549 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_643335.1 577966 R 266117 CDS YP_643336.1 108803399 4116166 complement(578974..580068) 1 NC_008148.1 KEGG: sai:Saci_2122 hypothetical protein; hypothetical protein 580068 4116166 Rxyl_0550 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643336.1 578974 R 266117 CDS YP_643337.1 108803400 4116167 complement(580146..580925) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1190 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 580925 4116167 Rxyl_0551 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643337.1 580146 R 266117 CDS YP_643338.1 108803401 4116168 complement(580929..582101) 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO2401 dehydratase; mandelate racemase/muconate lactonizing-like protein 582101 4116168 Rxyl_0552 Rubrobacter xylanophilus DSM 9941 mandelate racemase/muconate lactonizing-like protein YP_643338.1 580929 R 266117 CDS YP_643339.1 108803402 4116169 complement(582098..583033) 1 NC_008148.1 KEGG: gka:GK1960 hypothetical protein; hypothetical protein 583033 4116169 Rxyl_0553 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643339.1 582098 R 266117 CDS YP_643340.1 108803403 4116170 complement(583030..583788) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1310 regulatory protein GntR, HTH; GntR family transcriptional regulator 583788 4116170 Rxyl_0554 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643340.1 583030 R 266117 CDS YP_643341.1 108803404 4116171 583889..584287 1 NC_008148.1 hypothetical protein 584287 4116171 Rxyl_0555 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643341.1 583889 D 266117 CDS YP_643342.1 108803405 4116737 complement(584262..584525) 1 NC_008148.1 hypothetical protein 584525 4116737 Rxyl_0556 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643342.1 584262 R 266117 CDS YP_643343.1 108803406 4116738 complement(584552..584809) 1 NC_008148.1 hypothetical protein 584809 4116738 Rxyl_0557 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643343.1 584552 R 266117 CDS YP_643344.1 108803407 4116739 complement(585027..585626) 1 NC_008148.1 hypothetical protein 585626 4116739 Rxyl_0558 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643344.1 585027 R 266117 CDS YP_643345.1 108803408 4116740 complement(585742..587685) 1 NC_008148.1 PFAM: TPR repeat O-antigen polymerase Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mta:Moth_1253 O-antigen polymerase; O-antigen polymerase 587685 4116740 Rxyl_0559 Rubrobacter xylanophilus DSM 9941 O-antigen polymerase YP_643345.1 585742 R 266117 CDS YP_643346.1 108803409 4116741 587827..589305 1 NC_008148.1 PFAM: lipopolysaccharide biosynthesis; KEGG: fra:Francci3_3472 protein-tyrosine kinase; protein-tyrosine kinase 589305 4116741 Rxyl_0560 Rubrobacter xylanophilus DSM 9941 protein-tyrosine kinase YP_643346.1 587827 D 266117 CDS YP_643347.1 108803410 4116742 589575..590945 1 NC_008148.1 PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1513 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 590945 4116742 Rxyl_0561 Rubrobacter xylanophilus DSM 9941 polysaccharide biosynthesis protein YP_643347.1 589575 D 266117 CDS YP_643348.1 108803411 4116743 590942..591901 1 NC_008148.1 KEGG: rba:RB10430 hypothetical protein; hypothetical protein 591901 4116743 Rxyl_0562 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643348.1 590942 D 266117 CDS YP_643349.1 108803412 4116744 591962..592810 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2885 glycosyl transferase, family 2; glycosyl transferase family protein 592810 4116744 Rxyl_0563 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_643349.1 591962 D 266117 CDS YP_643350.1 108803413 4116745 592846..593838 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: tbd:Tbd_0313 rhamnosyl transferase related protein; glycosyl transferase family protein 593838 4116745 Rxyl_0564 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_643350.1 592846 D 266117 CDS YP_643351.1 108803414 4116746 594291..595172 1 NC_008148.1 hypothetical protein 595172 4116746 Rxyl_0565 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643351.1 594291 D 266117 CDS YP_643352.1 108803415 4116747 595213..596298 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: tcx:Tcr_1682 hypothetical protein; group 1 glycosyl transferase 596298 4116747 Rxyl_0566 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_643352.1 595213 D 266117 CDS YP_643353.1 108803416 4116748 596295..597299 1 NC_008148.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase dTDP-4-dehydrorhamnose reductase; KEGG: aae:aq_1082 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 597299 4116748 Rxyl_0567 Rubrobacter xylanophilus DSM 9941 GDP-mannose 4,6-dehydratase YP_643353.1 596295 D 266117 CDS YP_643354.1 108803417 4116749 597300..598247 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: rpa:RPA3952 possible oxidoreductase Rmd; NAD-dependent epimerase/dehydratase 598247 4116749 Rxyl_0568 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_643354.1 597300 D 266117 CDS YP_643355.1 108803418 4116750 599744..601204 1 NC_008148.1 PFAM: sugar transferase; KEGG: noc:Noc_1508 undecaprenyl-phosphate galactosephosphotransferase; undecaprenyl-phosphate galactosephosphotransferase 601204 4116750 Rxyl_0571 Rubrobacter xylanophilus DSM 9941 undecaprenyl-phosphate galactosephosphotransferase YP_643355.1 599744 D 266117 CDS YP_643356.1 108803419 4116751 601474..601803 1 NC_008148.1 hypothetical protein 601803 4116751 Rxyl_0572 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643356.1 601474 D 266117 CDS YP_643357.1 108803420 4116752 601974..602795 1 NC_008148.1 PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase 602795 4116752 Rxyl_0573 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_643357.1 601974 D 266117 CDS YP_643358.1 108803421 4116753 603080..603967 1 NC_008148.1 PFAM: helix-turn-helix protein RpiR; KEGG: sco:SCO0724 transcriptional regulator; RpiR family transcriptional regulator 603967 4116753 Rxyl_0574 Rubrobacter xylanophilus DSM 9941 RpiR family transcriptional regulator YP_643358.1 603080 D 266117 CDS YP_643359.1 108803422 4116754 604020..605459 1 NC_008148.1 PFAM: Na+/solute symporter; KEGG: pae:PA0287 probable sodium:solute symporter; Na+/solute symporter 605459 4116754 Rxyl_0575 Rubrobacter xylanophilus DSM 9941 Na+/solute symporter YP_643359.1 604020 D 266117 CDS YP_643360.1 108803423 4116755 605484..607013 1 NC_008148.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 607013 4116755 Rxyl_0576 Rubrobacter xylanophilus DSM 9941 histidine ammonia-lyase YP_643360.1 605484 D 266117 CDS YP_643361.1 108803424 4116756 607231..608235 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO2931 putative ABC transporter ATP-binding protein; ABC transporter-like protein 608235 4116756 Rxyl_0577 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643361.1 607231 D 266117 CDS YP_643362.1 108803425 4116544 608239..608946 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2960 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 608946 4116544 Rxyl_0578 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643362.1 608239 D 266117 CDS YP_643363.1 108803426 4116545 608947..609600 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2571 quaternary amine ABC transporter (QAT) family, permease protein; binding-protein-dependent transport system inner membrane protein 609600 4116545 Rxyl_0579 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643363.1 608947 D 266117 CDS YP_643364.1 108803427 4116546 609626..610591 1 NC_008148.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cyb:CYB_0579 quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein; glycine betaine ABC transporter substrate-binding protein 610591 4116546 Rxyl_0580 Rubrobacter xylanophilus DSM 9941 glycine betaine ABC transporter substrate-binding protein YP_643364.1 609626 D 266117 CDS YP_643365.1 108803428 4116547 610588..612075 1 NC_008148.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sma:SAV3504 putative histidine ammonia-lyase; histidine ammonia-lyase 612075 4116547 Rxyl_0581 Rubrobacter xylanophilus DSM 9941 histidine ammonia-lyase YP_643365.1 610588 D 266117 CDS YP_643366.1 108803429 4116548 612077..613294 1 NC_008148.1 KEGG: gka:GK3252 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20; hydantoinase/carbamoylase 613294 4116548 Rxyl_0582 Rubrobacter xylanophilus DSM 9941 hydantoinase/carbamoylase YP_643366.1 612077 D 266117 CDS YP_643367.1 108803430 4116549 613291..614955 1 NC_008148.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 614955 4116549 Rxyl_0583 Rubrobacter xylanophilus DSM 9941 urocanate hydratase YP_643367.1 613291 D 266117 CDS YP_643368.1 108803431 4116550 614952..616214 1 NC_008148.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 616214 4116550 Rxyl_0584 Rubrobacter xylanophilus DSM 9941 N-formimino-L-glutamate deiminase YP_643368.1 614952 D 266117 CDS YP_643369.1 108803432 4116551 616211..617458 1 NC_008148.1 KEGG: sth:STH3191 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase Amidohydrolase 3; imidazolonepropionase 617458 4116551 Rxyl_0585 Rubrobacter xylanophilus DSM 9941 imidazolonepropionase YP_643369.1 616211 D 266117 CDS YP_643370.1 108803433 4116552 617974..618378 1 NC_008148.1 PFAM: helix-turn-helix motif protein of unknown function UPF0150; KEGG: ava:Ava_1938 hypothetical protein; XRE family transcriptional regulator 618378 4116552 Rxyl_0586 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_643370.1 617974 D 266117 CDS YP_643371.1 108803434 4116553 618375..618563 1 NC_008148.1 PFAM: YcfA-like; KEGG: rba:RB3259 hypothetical protein; hypothetical protein 618563 4116553 Rxyl_0587 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643371.1 618375 D 266117 CDS YP_643372.1 108803435 4116554 619658..620347 1 NC_008148.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing; two component transcriptional regulator 620347 4116554 Rxyl_0589 Rubrobacter xylanophilus DSM 9941 two component transcriptional regulator YP_643372.1 619658 D 266117 CDS YP_643373.1 108803436 4116555 complement(620344..620970) 1 NC_008148.1 PFAM: protein of unknown function DUF305; KEGG: tfu:Tfu_0639 putative secreted protein; hypothetical protein 620970 4116555 Rxyl_0590 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643373.1 620344 R 266117 CDS YP_643374.1 108803437 4116556 complement(620967..621626) 1 NC_008148.1 KEGG: tfu:Tfu_0640 hypothetical protein; hypothetical protein 621626 4116556 Rxyl_0591 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643374.1 620967 R 266117 CDS YP_643375.1 108803438 4116557 complement(621638..622051) 1 NC_008148.1 PFAM: protein of unknown function DUF1232; KEGG: mca:MCA1269 hypothetical protein; hypothetical protein 622051 4116557 Rxyl_0592 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643375.1 621638 R 266117 CDS YP_643376.1 108803439 4116558 complement(622067..624202) 1 NC_008148.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: gka:GK0750 cation-transporting ATPase; heavy metal translocating P-type ATPase 624202 4116558 Rxyl_0593 Rubrobacter xylanophilus DSM 9941 heavy metal translocating P-type ATPase YP_643376.1 622067 R 266117 CDS YP_643377.1 108803440 4116559 complement(624251..625195) 1 NC_008148.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sma:SAV7048 putative cation efflux system protein; cation diffusion facilitator family transporter 625195 4116559 Rxyl_0594 Rubrobacter xylanophilus DSM 9941 cation diffusion facilitator family transporter YP_643377.1 624251 R 266117 CDS YP_643378.1 108803441 4116560 complement(625238..625615) 1 NC_008148.1 PFAM: regulatory protein, ArsR; KEGG: dra:DRA0071 transcriptional repressor SmtB; ArsR family transcriptional regulator 625615 4116560 Rxyl_0595 Rubrobacter xylanophilus DSM 9941 ArsR family transcriptional regulator YP_643378.1 625238 R 266117 CDS YP_643379.1 108803442 4116561 complement(625625..626515) 1 NC_008148.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mbo:Mb2050c possible conserved membrane protein; cation diffusion facilitator family transporter 626515 4116561 Rxyl_0596 Rubrobacter xylanophilus DSM 9941 cation diffusion facilitator family transporter YP_643379.1 625625 R 266117 CDS YP_643380.1 108803443 4116562 complement(626512..626940) 1 NC_008148.1 PFAM: protein of unknown function UPF0066; KEGG: pab:PAB0452 virR related; hypothetical protein 626940 4116562 Rxyl_0597 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643380.1 626512 R 266117 CDS YP_643381.1 108803444 4116368 complement(626937..627449) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH1868 hypothetical protein; N-acetyltransferase GCN5 627449 4116368 Rxyl_0598 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_643381.1 626937 R 266117 CDS YP_643382.1 108803445 4116369 complement(627473..627859) 1 NC_008148.1 PFAM: regulatory protein, MarR regulatory protein, ArsR transcriptional regulator TrmB; KEGG: nfa:nfa31050 putative transcriptional regulator; TrmB/ArsR family transcriptional regulator 627859 4116369 Rxyl_0599 Rubrobacter xylanophilus DSM 9941 TrmB/ArsR family transcriptional regulator YP_643382.1 627473 R 266117 CDS YP_643383.1 108803446 4116370 complement(627891..628547) 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: rpa:RPA0555 possible methyltransferase; type 11 methyltransferase 628547 4116370 Rxyl_0600 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_643383.1 627891 R 266117 CDS YP_643384.1 108803447 4116371 complement(628534..629619) 1 NC_008148.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: fra:Francci3_1988 peptidase S1 and S6, chymotrypsin/Hap; hypothetical protein 629619 4116371 Rxyl_0601 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643384.1 628534 R 266117 CDS YP_643385.1 108803448 4116372 629697..630053 1 NC_008148.1 hypothetical protein 630053 4116372 Rxyl_0602 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643385.1 629697 D 266117 CDS YP_643386.1 108803449 4116373 complement(630050..630328) 1 NC_008148.1 hypothetical protein 630328 4116373 Rxyl_0603 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643386.1 630050 R 266117 CDS YP_643387.1 108803450 4116374 complement(630352..631794) 1 NC_008148.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 631794 4116374 Rxyl_0604 Rubrobacter xylanophilus DSM 9941 light-independent protochlorophyllide reductase subunit B YP_643387.1 630352 R 266117 CDS YP_643388.1 108803451 4116375 complement(631791..633134) 1 NC_008148.1 KEGG: cyb:CYB_1013 light-independent protochlorophyllide reductase, N subunit; hypothetical protein 633134 4116375 Rxyl_0605 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643388.1 631791 R 266117 CDS YP_643389.1 108803452 4116376 complement(633196..633906) 1 NC_008148.1 PFAM: purine and other phosphorylases, family 1; KEGG: ttj:TTHA1435 purine nucleoside phosphorylase; purine-nucleoside phosphorylase 633906 4116376 Rxyl_0606 Rubrobacter xylanophilus DSM 9941 purine-nucleoside phosphorylase YP_643389.1 633196 R 266117 CDS YP_643390.1 108803453 4116377 complement(633965..635230) 1 NC_008148.1 TIGRFAM: Pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase, family 3 Pyrimidine nucleoside phosphorylase-like; KEGG: dra:DR0443 pyrimidine-nucleoside phosphorylase; thymidine phosphorylase 635230 4116377 Rxyl_0607 Rubrobacter xylanophilus DSM 9941 thymidine phosphorylase YP_643390.1 633965 R 266117 CDS YP_643391.1 108803454 4116378 complement(635227..637164) 1 NC_008148.1 PFAM: peptidase S15 peptidase S9, prolyl oligopeptidase active site region; KEGG: cyb:CYB_2016 peptidase, S9C (acylaminoacyl-peptidase) family; peptidase S9, prolyl oligopeptidase active site region 637164 4116378 Rxyl_0608 Rubrobacter xylanophilus DSM 9941 peptidase S9, prolyl oligopeptidase active site region YP_643391.1 635227 R 266117 CDS YP_643392.1 108803455 4116379 complement(637211..639148) 1 NC_008148.1 KEGG: ava:Ava_0969 putative amino acid transporter; putative amino acid transporter 639148 4116379 Rxyl_0609 Rubrobacter xylanophilus DSM 9941 putative amino acid transporter YP_643392.1 637211 R 266117 CDS YP_643393.1 108803456 4116380 complement(639158..640336) 1 NC_008148.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 640336 4116380 Rxyl_0610 Rubrobacter xylanophilus DSM 9941 phosphopentomutase YP_643393.1 639158 R 266117 CDS YP_643394.1 108803457 4116381 640450..640917 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: det:DET1149 acetyltransferase, GNAT family; acetyltransferase 640917 4116381 Rxyl_0611 Rubrobacter xylanophilus DSM 9941 acetyltransferase YP_643394.1 640450 D 266117 CDS YP_643395.1 108803458 4116382 complement(641462..642334) 1 NC_008148.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 642334 4116382 Rxyl_0612 Rubrobacter xylanophilus DSM 9941 pyridoxamine kinase YP_643395.1 641462 R 266117 CDS YP_643396.1 108803459 4116383 642467..642919 1 NC_008148.1 PFAM: regulatory protein, MarR; KEGG: ade:Adeh_0754 transcriptional regulator, MarR family; MarR family transcriptional regulator 642919 4116383 Rxyl_0613 Rubrobacter xylanophilus DSM 9941 MarR family transcriptional regulator YP_643396.1 642467 D 266117 CDS YP_643397.1 108803460 4116384 642916..644739 1 NC_008148.1 TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO3366 exporter; EmrB/QacA family drug resistance transporter 644739 4116384 Rxyl_0614 Rubrobacter xylanophilus DSM 9941 EmrB/QacA family drug resistance transporter YP_643397.1 642916 D 266117 CDS YP_643398.1 108803461 4116385 644741..645133 1 NC_008148.1 hypothetical protein 645133 4116385 Rxyl_0615 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643398.1 644741 D 266117 CDS YP_643399.1 108803462 4116386 645130..645378 1 NC_008148.1 hypothetical protein 645378 4116386 Rxyl_0616 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643399.1 645130 D 266117 CDS YP_643400.1 108803463 4116387 645375..646808 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: mta:Moth_0999 drug resistance transporter EmrB/QacA subfamily; major facilitator transporter 646808 4116387 Rxyl_0617 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643400.1 645375 D 266117 CDS YP_643401.1 108803464 4116913 646937..649759 1 NC_008148.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 649759 4116913 Rxyl_0618 Rubrobacter xylanophilus DSM 9941 aconitate hydratase YP_643401.1 646937 D 266117 CDS YP_643402.1 108803465 4116914 649770..650753 1 NC_008148.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sth:STH3215 putative glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 650753 4116914 Rxyl_0619 Rubrobacter xylanophilus DSM 9941 D-isomer specific 2-hydroxyacid dehydrogenase YP_643402.1 649770 D 266117 CDS YP_643403.1 108803466 4116915 650810..651715 1 NC_008148.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 651715 murQ 4116915 murQ Rubrobacter xylanophilus DSM 9941 N-acetylmuramic acid 6-phosphate etherase YP_643403.1 650810 D 266117 CDS YP_643404.1 108803467 4116916 651816..653099 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 1; KEGG: lxx:Lxx17590 sugar ABC transporter, sugar-binding protein; extracellular solute-binding protein 653099 4116916 Rxyl_0621 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_643404.1 651816 D 266117 CDS YP_643405.1 108803468 4116917 653131..654015 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02872 putative permease ABC transporter protein; binding-protein-dependent transport system inner membrane protein 654015 4116917 Rxyl_0622 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643405.1 653131 D 266117 CDS YP_643406.1 108803469 4116918 654017..654874 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06980 ABC-type sugar transport system, permease component; binding-protein-dependent transport system inner membrane protein 654874 4116918 Rxyl_0623 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643406.1 654017 D 266117 CDS YP_643407.1 108803470 4116919 654871..655761 1 NC_008148.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: sth:STH292 hypothetical protein; BadF/BadG/BcrA/BcrD type ATPase 655761 4116919 Rxyl_0624 Rubrobacter xylanophilus DSM 9941 BadF/BadG/BcrA/BcrD type ATPase YP_643407.1 654871 D 266117 CDS YP_643408.1 108803471 4116920 complement(656682..657188) 1 NC_008148.1 KEGG: tma:TM1012 hypothetical protein; hypothetical protein 657188 4116920 Rxyl_0626 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643408.1 656682 R 266117 CDS YP_643409.1 108803472 4116921 complement(657194..658894) 1 NC_008148.1 PFAM: beta-lactamase; KEGG: sco:SCO7243 secreted protein; beta-lactamase 658894 4116921 Rxyl_0627 Rubrobacter xylanophilus DSM 9941 beta-lactamase YP_643409.1 657194 R 266117 CDS YP_643410.1 108803473 4116922 complement(659066..660394) 1 NC_008148.1 PFAM: Uncharacterised conserved protein UCP016719; KEGG: sma:SAV6610 hypothetical protein; hypothetical protein 660394 4116922 Rxyl_0628 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643410.1 659066 R 266117 CDS YP_643411.1 108803474 4116923 complement(660405..662219) 1 NC_008148.1 PFAM: glycoside hydrolase, family 3-like; KEGG: sma:SAV5302 putative beta-N-acetylglucosaminidase; glycosyl hydrolase 662219 4116923 Rxyl_0629 Rubrobacter xylanophilus DSM 9941 glycosyl hydrolase YP_643411.1 660405 R 266117 CDS YP_643412.1 108803475 4116924 662292..663059 1 NC_008148.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: gka:GK2275 transcriptional regulator (GntR family); GntR family transcriptional regulator 663059 4116924 Rxyl_0630 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643412.1 662292 D 266117 CDS YP_643413.1 108803476 4116925 663076..663873 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gsu:GSU1603 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 663873 4116925 Rxyl_0631 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643413.1 663076 D 266117 CDS YP_643414.1 108803477 4116926 664111..664308 1 NC_008148.1 KEGG: nfa:nfa4260 hypothetical protein; hypothetical protein 664308 4116926 Rxyl_0632 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643414.1 664111 D 266117 CDS YP_643415.1 108803478 4116927 664325..664999 1 NC_008148.1 KEGG: sma:SAV2049 hypothetical protein; hypothetical protein 664999 4116927 Rxyl_0633 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643415.1 664325 D 266117 CDS YP_643416.1 108803479 4116928 664996..666495 1 NC_008148.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase CobB/CobQ-like glutamine amidotransferase; KEGG: sma:SAV6416 putative cobyric acid synthase; adenosylcobyric acid synthase 666495 4116928 Rxyl_0634 Rubrobacter xylanophilus DSM 9941 adenosylcobyric acid synthase YP_643416.1 664996 D 266117 CDS YP_643417.1 108803480 4116929 666482..670195 1 NC_008148.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 670195 cobN 4116929 cobN Rubrobacter xylanophilus DSM 9941 cobaltochelatase subunit CobN YP_643417.1 666482 D 266117 CDS YP_643418.1 108803481 4116930 670192..672042 1 NC_008148.1 PFAM: magnesium chelatase, ChlI subunit von Willebrand factor, type A ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: sco:SCO1850 putative chelatase; protoporphyrin IX magnesium-chelatase 672042 4116930 Rxyl_0636 Rubrobacter xylanophilus DSM 9941 protoporphyrin IX magnesium-chelatase YP_643418.1 670192 D 266117 CDS YP_643419.1 108803482 4116931 672039..672614 1 NC_008148.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 672614 4116931 Rxyl_0637 Rubrobacter xylanophilus DSM 9941 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_643419.1 672039 D 266117 CDS YP_643420.1 108803483 4116504 672608..673960 1 NC_008148.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 673960 4116504 Rxyl_0638 Rubrobacter xylanophilus DSM 9941 cobyrinic acid a,c-diamide synthase YP_643420.1 672608 D 266117 CDS YP_643421.1 108803484 4116505 673957..674673 1 NC_008148.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sco:SCO1853 precorrin-2 C20-methyltransferase; cobalt-factor II C20-methyltransferase/precorrin-2 C20-methyltransferase 674673 4116505 Rxyl_0639 Rubrobacter xylanophilus DSM 9941 cobalt-factor II C20-methyltransferase/precorrin-2 C20-methyltransferase YP_643421.1 673957 D 266117 CDS YP_643422.1 108803485 4116506 674666..675439 1 NC_008148.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV6409 putative methyltransferase; precorrin-4 C(11)-methyltransferase 675439 4116506 Rxyl_0640 Rubrobacter xylanophilus DSM 9941 precorrin-4 C(11)-methyltransferase YP_643422.1 674666 D 266117 CDS YP_643423.1 108803486 4116507 675432..676598 1 NC_008148.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 676598 cbiD 4116507 cbiD Rubrobacter xylanophilus DSM 9941 cobalt-precorrin-6A synthase YP_643423.1 675432 D 266117 CDS YP_643424.1 108803487 4116508 676586..677797 1 NC_008148.1 KEGG: sma:SAV6408 precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase; TIGRFAM: Precorrin-6y C5,15-methyltransferase, subunit CbiE; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6Y C5,15-methyltransferase 677797 4116508 Rxyl_0642 Rubrobacter xylanophilus DSM 9941 precorrin-6Y C5,15-methyltransferase YP_643424.1 676586 D 266117 CDS YP_643425.1 108803488 4116509 677794..679479 1 NC_008148.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: sma:SAV6407 putative precorrin methylase; precorrin-3 methyltransferase 679479 4116509 Rxyl_0643 Rubrobacter xylanophilus DSM 9941 precorrin-3 methyltransferase YP_643425.1 677794 D 266117 CDS YP_643426.1 108803489 4116510 679476..679682 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: mma:MM2634 putative pyruvate:ferredoxin oxidoreductase; 4Fe-4S ferredoxin 679682 4116510 Rxyl_0644 Rubrobacter xylanophilus DSM 9941 4Fe-4S ferredoxin YP_643426.1 679476 D 266117 CDS YP_643427.1 108803490 4116511 679679..680278 1 NC_008148.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: sma:SAV6406 putative precorrin-8X methylmutase; precorrin-8X methylmutase 680278 4116511 Rxyl_0645 Rubrobacter xylanophilus DSM 9941 precorrin-8X methylmutase YP_643427.1 679679 D 266117 CDS YP_643428.1 108803491 4116512 680268..681161 1 NC_008148.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: sma:SAV6405 putative metal binding protein; cobalamin (vitamin B12) biosynthesis CbiX protein 681161 4116512 Rxyl_0646 Rubrobacter xylanophilus DSM 9941 cobalamin (vitamin B12) biosynthesis CbiX protein YP_643428.1 680268 D 266117 CDS YP_643429.1 108803492 4116513 681145..682233 1 NC_008148.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: sco:SCO1554 putative nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 682233 4116513 Rxyl_0647 Rubrobacter xylanophilus DSM 9941 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_643429.1 681145 D 266117 CDS YP_643430.1 108803493 4116514 682230..683000 1 NC_008148.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: mca:MCA0465 cobalamin 5'-phosphate synthase; cobalamin-5'-phosphate synthase 683000 4116514 Rxyl_0648 Rubrobacter xylanophilus DSM 9941 cobalamin-5'-phosphate synthase YP_643430.1 682230 D 266117 CDS YP_643431.1 108803494 4116515 682997..683902 1 NC_008148.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: det:DET0688 cobalamin biosynthesis protein CobD; adenosylcobinamide-phosphate synthase 683902 4116515 Rxyl_0649 Rubrobacter xylanophilus DSM 9941 adenosylcobinamide-phosphate synthase YP_643431.1 682997 D 266117 CDS YP_643432.1 108803495 4116516 683905..685005 1 NC_008148.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase, putative; PFAM: aminotransferase, class I and II; KEGG: det:DET0689 histidinol-phosphate aminotransferase, putative; L-threonine O-3-phosphate decarboxylase 685005 4116516 Rxyl_0650 Rubrobacter xylanophilus DSM 9941 L-threonine O-3-phosphate decarboxylase YP_643432.1 683905 D 266117 CDS YP_643433.1 108803496 4116517 685005..685625 1 NC_008148.1 PFAM: Phosphoglycerate mutase; KEGG: mta:Moth_1105 phosphoglycerate/bisphosphoglycerate mutase; phosphoglycerate mutase 685625 4116517 Rxyl_0651 Rubrobacter xylanophilus DSM 9941 phosphoglycerate mutase YP_643433.1 685005 D 266117 CDS YP_643434.1 108803497 4116518 685622..686185 1 NC_008148.1 PFAM: cobalbumin biosynthesis enzyme; SMART: ATPase; KEGG: det:DET0694 cobinamide kinase/cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase 686185 4116518 Rxyl_0652 Rubrobacter xylanophilus DSM 9941 adenosylcobinamide kinase YP_643434.1 685622 D 266117 CDS YP_643435.1 108803498 4116519 complement(686182..686865) 1 NC_008148.1 PFAM: regulatory protein, MarR iron dependent repressor FeoA; KEGG: sru:SRU_2045 iron dependent repressor, putative; DtxR family iron dependent repressor 686865 4116519 Rxyl_0653 Rubrobacter xylanophilus DSM 9941 DtxR family iron dependent repressor YP_643435.1 686182 R 266117 CDS YP_643436.1 108803499 4116520 686983..688248 1 NC_008148.1 TIGRFAM: NRAMP family Mn2+/Fe2+ transporters; PFAM: natural resistance-associated macrophage protein; KEGG: bld:BLi00526 manganese transporter; RBL02636; manganese transport protein MntH 688248 4116520 Rxyl_0654 Rubrobacter xylanophilus DSM 9941 manganese transport protein MntH YP_643436.1 686983 D 266117 CDS YP_643437.1 108803500 4116521 688360..689172 1 NC_008148.1 PFAM: zinc/iron permease; KEGG: dps:DP0096 GufA protein; zinc/iron permease 689172 4116521 Rxyl_0655 Rubrobacter xylanophilus DSM 9941 zinc/iron permease YP_643437.1 688360 D 266117 CDS YP_643438.1 108803501 4116522 689391..690971 1 NC_008148.1 KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: HC2 PROSITE: ALA_RICH GLU_RICH; chromosome segregation ATPases-like protein 690971 4116522 Rxyl_0656 Rubrobacter xylanophilus DSM 9941 chromosome segregation ATPases-like protein YP_643438.1 689391 D 266117 CDS YP_643439.1 108803502 4116523 691065..692414 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU3264 membrane protein, putative; major facilitator transporter 692414 4116523 Rxyl_0657 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643439.1 691065 D 266117 CDS YP_643440.1 108803503 4114644 692417..693577 1 NC_008148.1 KEGG: sth:STH1280 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine 6-phosphate deacetylase 693577 4114644 Rxyl_0658 Rubrobacter xylanophilus DSM 9941 N-acetylglucosamine 6-phosphate deacetylase YP_643440.1 692417 D 266117 CDS YP_643441.1 108803504 4114645 693581..694120 1 NC_008148.1 PFAM: Appr-1-p processing; KEGG: sru:SRU_0547 Appr-1-p processing enzyme family protein; Appr-1-p processing 694120 4114645 Rxyl_0659 Rubrobacter xylanophilus DSM 9941 Appr-1-p processing YP_643441.1 693581 D 266117 CDS YP_643442.1 108803505 4114646 694144..694560 1 NC_008148.1 PFAM: Methionine sulfoxide reductase B; KEGG: mth:MTH711 peptide methionine sulfoxide reductase; protein-methionine-S-oxide reductase 694560 4114646 Rxyl_0660 Rubrobacter xylanophilus DSM 9941 protein-methionine-S-oxide reductase YP_643442.1 694144 D 266117 CDS YP_643443.1 108803506 4114647 694601..696541 1 NC_008148.1 PFAM: sulfatase; KEGG: ppu:PP1033 sulfatase domain protein; sulfatase 696541 4114647 Rxyl_0661 Rubrobacter xylanophilus DSM 9941 sulfatase YP_643443.1 694601 D 266117 CDS YP_643444.1 108803507 4114648 696606..698498 1 NC_008148.1 PFAM: sulfatase; KEGG: ppu:PP1033 sulfatase domain protein; sulfatase 698498 4114648 Rxyl_0662 Rubrobacter xylanophilus DSM 9941 sulfatase YP_643444.1 696606 D 266117 CDS YP_643445.1 108803508 4114649 698577..699971 1 NC_008148.1 PFAM: DNA photolyase, FAD-binding DNA photolyase-like; KEGG: sru:SRU_1754 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase type II 699971 4114649 Rxyl_0663 Rubrobacter xylanophilus DSM 9941 deoxyribodipyrimidine photo-lyase type II YP_643445.1 698577 D 266117 CDS YP_643446.1 108803509 4114650 700013..700405 1 NC_008148.1 PFAM: protein of unknown function DUF202; KEGG: sai:Saci_1091 membrane protein; hypothetical protein 700405 4114650 Rxyl_0664 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643446.1 700013 D 266117 CDS YP_643447.1 108803510 4114651 700732..701196 1 NC_008148.1 KEGG: cef:CE2616 hypothetical protein; hypothetical protein 701196 4114651 Rxyl_0665 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643447.1 700732 D 266117 CDS YP_643448.1 108803511 4114652 701207..701656 1 NC_008148.1 hypothetical protein 701656 4114652 Rxyl_0666 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643448.1 701207 D 266117 CDS YP_643449.1 108803512 4114653 701643..702773 1 NC_008148.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: fra:Francci3_1988 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 702773 4114653 Rxyl_0667 Rubrobacter xylanophilus DSM 9941 peptidase S1 and S6, chymotrypsin/Hap YP_643449.1 701643 D 266117 CDS YP_643450.1 108803513 4114654 702797..703081 1 NC_008148.1 hypothetical protein 703081 4114654 Rxyl_0668 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643450.1 702797 D 266117 CDS YP_643451.1 108803514 4114655 703097..704416 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 704416 4114655 Rxyl_0669 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_643451.1 703097 D 266117 CDS YP_643452.1 108803515 4114656 704483..704989 1 NC_008148.1 PFAM: MaoC-like dehydratase; KEGG: msy:MS53_0536 putative transcription regulatory protein; MaoC-like dehydratase 704989 4114656 Rxyl_0670 Rubrobacter xylanophilus DSM 9941 MaoC-like dehydratase YP_643452.1 704483 D 266117 CDS YP_643453.1 108803516 4114657 complement(704967..705734) 1 NC_008148.1 KEGG: bpe:BP1549 DNA polymerase III subunit Tau; hypothetical protein 705734 4114657 Rxyl_0671 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643453.1 704967 R 266117 CDS YP_643454.1 108803517 4114658 705879..706358 1 NC_008148.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU2678 heat shock protein, HSP20 family; heat shock protein Hsp20 706358 4114658 Rxyl_0672 Rubrobacter xylanophilus DSM 9941 heat shock protein Hsp20 YP_643454.1 705879 D 266117 CDS YP_643455.1 108803518 4114659 706520..707344 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4; KEGG: tte:TTE1755 DNA-directed RNA polymerase sigma subunits (sigma70/sigma32); RNA polymerase sigma-28 subunit 707344 4114659 Rxyl_0673 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_643455.1 706520 D 266117 CDS YP_643456.1 108803519 4114660 complement(707341..707715) 1 NC_008148.1 hypothetical protein 707715 4114660 Rxyl_0674 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643456.1 707341 R 266117 CDS YP_643457.1 108803520 4114661 707968..708459 1 NC_008148.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU0538 heat shock protein, HSP20 family; heat shock protein Hsp20 708459 4114661 Rxyl_0675 Rubrobacter xylanophilus DSM 9941 heat shock protein Hsp20 YP_643457.1 707968 D 266117 CDS YP_643458.1 108803521 4114662 708568..711228 1 NC_008148.1 PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: sco:SCO6408 clp protease ATP binding subunit; ATPase 711228 4114662 Rxyl_0676 Rubrobacter xylanophilus DSM 9941 ATPase YP_643458.1 708568 D 266117 CDS YP_643459.1 108803522 4117282 711236..711685 1 NC_008148.1 KEGG: ava:Ava_C0146 hypothetical protein; hypothetical protein 711685 4117282 Rxyl_0677 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643459.1 711236 D 266117 CDS YP_643460.1 108803523 4117283 711696..712535 1 NC_008148.1 PFAM: protein of unknown function DUF114; KEGG: chy:CHY_2465 hypothetical protein; hypothetical protein 712535 4117283 Rxyl_0678 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643460.1 711696 D 266117 CDS YP_643461.1 108803524 4117284 712564..713964 1 NC_008148.1 SMART: Phospholipase D/Transphosphatidylase; KEGG: nmu:Nmul_A1712 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 713964 4117284 Rxyl_0679 Rubrobacter xylanophilus DSM 9941 phospholipase D/transphosphatidylase YP_643461.1 712564 D 266117 CDS YP_643462.1 108803525 4117285 714058..715656 1 NC_008148.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 715656 4117285 Rxyl_0680 Rubrobacter xylanophilus DSM 9941 phosphoenolpyruvate carboxykinase YP_643462.1 714058 D 266117 CDS YP_643463.1 108803526 4117286 715843..716736 1 NC_008148.1 PFAM: manganese containing catalase; KEGG: ttj:TTHA0122 manganese-containing pseudocatalase; manganese containing catalase 716736 4117286 Rxyl_0681 Rubrobacter xylanophilus DSM 9941 manganese containing catalase YP_643463.1 715843 D 266117 CDS YP_643464.1 108803527 4117287 complement(716785..718425) 1 NC_008148.1 KEGG: gvi:glr3825 hypothetical protein; hypothetical protein 718425 4117287 Rxyl_0682 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643464.1 716785 R 266117 CDS YP_643465.1 108803528 4117288 718498..719382 1 NC_008148.1 PFAM: protein of unknown function DUF1206; KEGG: rba:RB1728 conserved hypothetical protein-putative integraal membrane protein; hypothetical protein 719382 4117288 Rxyl_0683 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643465.1 718498 D 266117 CDS YP_643466.1 108803529 4117289 complement(719384..719887) 1 NC_008148.1 PFAM: OsmC-like protein; KEGG: bja:blr0920 hypothetical protein; OsmC-like protein 719887 4117289 Rxyl_0684 Rubrobacter xylanophilus DSM 9941 OsmC-like protein YP_643466.1 719384 R 266117 CDS YP_643467.1 108803530 4117290 complement(719932..720924) 1 NC_008148.1 KEGG: sco:SCO0913 hypothetical protein; hypothetical protein 720924 4117290 Rxyl_0685 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643467.1 719932 R 266117 CDS YP_643468.1 108803531 4117291 complement(720921..721730) 1 NC_008148.1 KEGG: gvi:glr4332 hypothetical protein; hypothetical protein 721730 4117291 Rxyl_0686 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643468.1 720921 R 266117 CDS YP_643469.1 108803532 4117292 complement(721756..723069) 1 NC_008148.1 PFAM: protein of unknown function DUF323; KEGG: sma:SAV7340 hypothetical protein; hypothetical protein 723069 4117292 Rxyl_0687 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643469.1 721756 R 266117 CDS YP_643470.1 108803533 4117293 723289..724620 1 NC_008148.1 PFAM: Myo-inositol-1-phosphate synthase Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: ade:Adeh_1535 inositol-3-phosphate synthase; inositol-3-phosphate synthase 724620 4117293 Rxyl_0688 Rubrobacter xylanophilus DSM 9941 inositol-3-phosphate synthase YP_643470.1 723289 D 266117 CDS YP_643471.1 108803534 4117294 724625..725821 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 725821 4117294 Rxyl_0689 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_643471.1 724625 D 266117 CDS YP_643472.1 108803535 4117295 725883..727067 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: mma:MM0650 mannosyltransferase; group 1 glycosyl transferase 727067 4117295 Rxyl_0690 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_643472.1 725883 D 266117 CDS YP_643473.1 108803536 4117296 complement(727040..727849) 1 NC_008148.1 PFAM: sulfotransferase; KEGG: ssc:641359 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1; sulfotransferase 727849 4117296 Rxyl_0691 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_643473.1 727040 R 266117 CDS YP_643474.1 108803537 4117297 complement(727846..728808) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ade:Adeh_2797 zinc-binding alcohol dehydrogenase; zinc-binding alcohol dehydrogenase 728808 4117297 Rxyl_0692 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_643474.1 727846 R 266117 CDS YP_643475.1 108803538 4117298 728933..729475 1 NC_008148.1 hypothetical protein 729475 4117298 Rxyl_0693 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643475.1 728933 D 266117 CDS YP_643476.1 108803539 4117299 729563..729721 1 NC_008148.1 PFAM: protein of unknown function UPF0057; KEGG: rru:Rru_A2519 hypothetical protein; hypothetical protein 729721 4117299 Rxyl_0694 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643476.1 729563 D 266117 CDS YP_643477.1 108803540 4117300 complement(729718..730497) 1 NC_008148.1 PFAM: inositol monophosphatase; KEGG: cte:CT1430 myo-inositol-1(or 4)-monophosphatase; histidinol-phosphate phosphatase 730497 4117300 Rxyl_0695 Rubrobacter xylanophilus DSM 9941 histidinol-phosphate phosphatase YP_643477.1 729718 R 266117 CDS YP_643478.1 108803541 4117301 730630..731532 1 NC_008148.1 PFAM: NLP/P60; KEGG: sth:STH1068 putative amidase; PgdS peptidase 731532 4117301 Rxyl_0696 Rubrobacter xylanophilus DSM 9941 PgdS peptidase YP_643478.1 730630 D 266117 CDS YP_643479.1 108803542 4116582 complement(731545..732567) 1 NC_008148.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: gka:GK2791 protease IV (signal peptide peptidase); signal peptide peptidase A 732567 4116582 Rxyl_0697 Rubrobacter xylanophilus DSM 9941 signal peptide peptidase A YP_643479.1 731545 R 266117 CDS YP_643480.1 108803543 4116583 complement(732626..733504) 1 NC_008148.1 KEGG: tth:TTC1218 transcriptional regulator; transcriptional regulator 733504 4116583 Rxyl_0698 Rubrobacter xylanophilus DSM 9941 transcriptional regulator YP_643480.1 732626 R 266117 CDS YP_643481.1 108803544 4116584 complement(733574..734179) 1 NC_008148.1 related to the Icc protein-like; KEGG: tde:TDE1124 hypothetical protein; phosphoesterase 734179 4116584 Rxyl_0699 Rubrobacter xylanophilus DSM 9941 phosphoesterase YP_643481.1 733574 R 266117 CDS YP_643482.1 108803545 4116585 734284..734682 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: mth:MTH1315 mutator MutT protein; NUDIX hydrolase 734682 4116585 Rxyl_0700 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_643482.1 734284 D 266117 CDS YP_643483.1 108803546 4116586 734744..735217 1 NC_008148.1 PFAM: protein of unknown function DUF107; KEGG: mth:MTH693 hypothetical protein; hypothetical protein 735217 4116586 Rxyl_0701 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643483.1 734744 D 266117 CDS YP_643484.1 108803547 4116587 735214..736158 1 NC_008148.1 PFAM: band 7 protein; KEGG: fra:Francci3_1352 band 7 protein; SPFH domain-containing protein/band 7 family protein 736158 4116587 Rxyl_0702 Rubrobacter xylanophilus DSM 9941 SPFH domain-containing protein/band 7 family protein YP_643484.1 735214 D 266117 CDS YP_643485.1 108803548 4116588 complement(736145..736807) 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: mpa:MAP0689c two-component system, NarL family, response regulator; two component LuxR family transcriptional regulator 736807 4116588 Rxyl_0703 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_643485.1 736145 R 266117 CDS YP_643486.1 108803549 4116589 complement(736807..737949) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO6424 two-component system sensor protein; histidine kinase 737949 4116589 Rxyl_0704 Rubrobacter xylanophilus DSM 9941 histidine kinase YP_643486.1 736807 R 266117 CDS YP_643487.1 108803550 4116590 complement(737985..740321) 1 NC_008148.1 PFAM: glycoside hydrolase, family 31; KEGG: tfu:Tfu_1613 putative alpha-glucosidase; glycoside hydrolase family protein 740321 4116590 Rxyl_0705 Rubrobacter xylanophilus DSM 9941 glycoside hydrolase family protein YP_643487.1 737985 R 266117 CDS YP_643488.1 108803551 4116591 complement(740329..741057) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A1794 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 741057 4116591 Rxyl_0706 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_643488.1 740329 R 266117 CDS YP_643489.1 108803552 4116592 complement(741144..741596) 1 NC_008148.1 KEGG: dge:Dgeo_1459 hypothetical protein; hypothetical protein 741596 4116592 Rxyl_0707 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643489.1 741144 R 266117 CDS YP_643490.1 108803553 4116593 complement(741615..742112) 1 NC_008148.1 KEGG: tfu:Tfu_1651 conserved hypothetical membrane-anchored protein; hypothetical protein 742112 4116593 Rxyl_0708 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643490.1 741615 R 266117 CDS YP_643491.1 108803554 4116594 complement(742255..742485) 1 NC_008148.1 KEGG: mpa:MAP2019c hypothetical protein; hypothetical protein 742485 4116594 Rxyl_0709 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643491.1 742255 R 266117 CDS YP_643492.1 108803555 4116595 complement(742540..743559) 1 NC_008148.1 PFAM: glycosyl transferase, family 9; KEGG: tfu:Tfu_0894 putative glycosyltransferase; glycosyl transferase family protein 743559 4116595 Rxyl_0710 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_643492.1 742540 R 266117 CDS YP_643493.1 108803556 4116596 complement(743561..744928) 1 NC_008148.1 TIGRFAM: Cytidyltransferase-related RfaE bifunctional protein, domain II; PFAM: cytidylyltransferase PfkB; KEGG: sco:SCO6187 bifunctional synthase/transferase; bifunctional ADP-heptose synthase 744928 4116596 Rxyl_0711 Rubrobacter xylanophilus DSM 9941 bifunctional ADP-heptose synthase YP_643493.1 743561 R 266117 CDS YP_643494.1 108803557 4116597 complement(744925..745503) 1 NC_008148.1 TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); KEGG: sco:SCO6186 putative phosphoheptose isomerase; phosphoheptose isomerase 745503 4116597 Rxyl_0712 Rubrobacter xylanophilus DSM 9941 phosphoheptose isomerase YP_643494.1 744925 R 266117 CDS YP_643495.1 108803558 4116598 complement(745500..746717) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: mpa:MAP3246 hypothetical protein; group 1 glycosyl transferase 746717 4116598 Rxyl_0713 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_643495.1 745500 R 266117 CDS YP_643496.1 108803559 4116599 complement(746708..747655) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: sco:SCO6184 transferase; group 1 glycosyl transferase 747655 4116599 Rxyl_0714 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_643496.1 746708 R 266117 CDS YP_643497.1 108803560 4116600 complement(747652..748686) 1 NC_008148.1 PFAM: glycosyl transferase, family 9; KEGG: sco:SCO6183 transferase; glycosyl transferase family protein 748686 4116600 Rxyl_0715 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_643497.1 747652 R 266117 CDS YP_643498.1 108803561 4116524 complement(748683..750188) 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1 Histidinol-phosphate phosphatase HAD-superfamily hydrolase subfamily IIIA; PFAM: glycosyl transferase, family 2 Haloacid dehalogenase-like hydrolase; KEGG: sco:SCO6181 transferase; HAD family hydrolase 750188 4116524 Rxyl_0716 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_643498.1 748683 R 266117 CDS YP_643499.1 108803562 4116525 complement(750185..751837) 1 NC_008148.1 PFAM: Carbamoyltransferase; KEGG: sco:SCO6180 transferase; carbamoyltransferase 751837 4116525 Rxyl_0717 Rubrobacter xylanophilus DSM 9941 carbamoyltransferase YP_643499.1 750185 R 266117 CDS YP_643500.1 108803563 4116526 752212..752538 1 NC_008148.1 hypothetical protein 752538 4116526 Rxyl_0718 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643500.1 752212 D 266117 CDS YP_643501.1 108803564 4116527 752585..753637 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Male sterility-like; KEGG: fra:Francci3_0814 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 753637 4116527 Rxyl_0719 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_643501.1 752585 D 266117 CDS YP_643502.1 108803565 4116528 753634..754803 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sco:SCO6706 glutathione-dependent aldehyde dehydrogenase; alcohol dehydrogenase GroES-like protein 754803 4116528 Rxyl_0720 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_643502.1 753634 D 266117 CDS YP_643503.1 108803566 4116529 754897..755280 1 NC_008148.1 KEGG: ana:all1996 hypothetical protein; hypothetical protein 755280 4116529 Rxyl_0721 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643503.1 754897 D 266117 CDS YP_643504.1 108803567 4116530 755567..756274 1 NC_008148.1 PFAM: sulfotransferase; KEGG: sru:SRU_1000 putative sulfotransferase protein; sulfotransferase 756274 4116530 Rxyl_0722 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_643504.1 755567 D 266117 CDS YP_643505.1 108803568 4116531 756577..757470 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Domain of unknown function DUF1731; KEGG: sru:SRU_0723 hypothetical protein; hypothetical protein 757470 4116531 Rxyl_0724 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643505.1 756577 D 266117 CDS YP_643506.1 108803569 4116532 complement(757480..758499) 1 NC_008148.1 PFAM: amino acid-binding ACT Prephenate dehydrogenase; KEGG: dra:DR1122 prephenate dehydrogenase; prephenate dehydrogenase 758499 4116532 Rxyl_0725 Rubrobacter xylanophilus DSM 9941 prephenate dehydrogenase YP_643506.1 757480 R 266117 CDS YP_643507.1 108803570 4116533 complement(758523..759578) 1 NC_008148.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: chy:CHY_1929 histidinol-phosphate aminotransferase; histidinol phosphate aminotransferase 759578 4116533 Rxyl_0726 Rubrobacter xylanophilus DSM 9941 histidinol phosphate aminotransferase YP_643507.1 758523 R 266117 CDS YP_643508.1 108803571 4116534 759710..760024 1 NC_008148.1 PFAM: Chorismate mutase; KEGG: ttj:TTHA0388 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase; chorismate mutase 760024 4116534 Rxyl_0727 Rubrobacter xylanophilus DSM 9941 chorismate mutase YP_643508.1 759710 D 266117 CDS YP_643509.1 108803572 4116535 760014..760808 1 NC_008148.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: mta:Moth_1335 phospho-2-dehydro-3-deoxyheptonate aldolase; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 760808 4116535 Rxyl_0728 Rubrobacter xylanophilus DSM 9941 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase YP_643509.1 760014 D 266117 CDS YP_643510.1 108803573 4116536 760905..762299 1 NC_008148.1 PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase; serine/threonine protein kinase 762299 4116536 Rxyl_0729 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_643510.1 760905 D 266117 CDS YP_643511.1 108803574 4116537 762325..763719 1 NC_008148.1 PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase; serine/threonine protein kinase 763719 4116537 Rxyl_0730 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_643511.1 762325 D 266117 CDS YP_643512.1 108803575 4116538 763716..764939 1 NC_008148.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: sth:STH417 serine proteinase; peptidase S1 and S6, chymotrypsin/Hap 764939 4116538 Rxyl_0731 Rubrobacter xylanophilus DSM 9941 peptidase S1 and S6, chymotrypsin/Hap YP_643512.1 763716 D 266117 CDS YP_643513.1 108803576 4116539 764945..765154 1 NC_008148.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: gka:GK1356 cold shock protein; cold-shock DNA-binding protein family protein 765154 4116539 Rxyl_0732 Rubrobacter xylanophilus DSM 9941 cold-shock DNA-binding protein family protein YP_643513.1 764945 D 266117 CDS YP_643514.1 108803577 4116540 765151..765846 1 NC_008148.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 765846 4116540 Rxyl_0733 Rubrobacter xylanophilus DSM 9941 ribose-5-phosphate isomerase A YP_643514.1 765151 D 266117 CDS YP_643515.1 108803578 4116541 complement(765843..766109) 1 NC_008148.1 hypothetical protein 766109 4116541 Rxyl_0734 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643515.1 765843 R 266117 CDS YP_643516.1 108803579 4116542 766244..766771 1 NC_008148.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: pca:Pcar_2304 hypothetical protein; PA-phosphatase-like phosphoesterase 766771 4116542 Rxyl_0735 Rubrobacter xylanophilus DSM 9941 PA-phosphatase-like phosphoesterase YP_643516.1 766244 D 266117 CDS YP_643517.1 108803580 4116543 766821..767375 1 NC_008148.1 hypothetical protein 767375 4116543 Rxyl_0736 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643517.1 766821 D 266117 CDS YP_643518.1 108803581 4116563 767372..768064 1 NC_008148.1 KEGG: bca:BCE2408 hypothetical protein; hypothetical protein 768064 4116563 Rxyl_0737 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643518.1 767372 D 266117 CDS YP_643519.1 108803582 4116564 768120..769181 1 NC_008148.1 PFAM: peptidase M18, aminopeptidase I peptidase M20 peptidase M42; KEGG: dra:DR0229 endoglucanase, putative; peptidase M42 769181 4116564 Rxyl_0738 Rubrobacter xylanophilus DSM 9941 peptidase M42 YP_643519.1 768120 D 266117 CDS YP_643520.1 108803583 4116565 769186..770070 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mta:Moth_1215 protein of unknown function DUF6, transmembrane; hypothetical protein 770070 4116565 Rxyl_0739 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643520.1 769186 D 266117 CDS YP_643521.1 108803584 4116566 770078..770458 1 NC_008148.1 PFAM: histidine triad (HIT) protein; KEGG: sru:SRU_2792 hypothetical HIT-like protein slr1234; histidine triad (HIT) protein 770458 4116566 Rxyl_0740 Rubrobacter xylanophilus DSM 9941 histidine triad (HIT) protein YP_643521.1 770078 D 266117 CDS YP_643522.1 108803585 4116567 complement(770462..772129) 1 NC_008148.1 proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 772129 4116567 Rxyl_0741 Rubrobacter xylanophilus DSM 9941 putative FAD-binding dehydrogenase YP_643522.1 770462 R 266117 CDS YP_643523.1 108803586 4116568 complement(773317..774495) 1 NC_008148.1 PFAM: UBA/THIF-type NAD/FAD binding fold Rhodanese-like MoeZ/MoeB; KEGG: gvi:gll3412 molybdopterin biosynthesis MoeB protein homolog; UBA/THIF-type NAD/FAD binding domain-containing protein 774495 4116568 Rxyl_0743 Rubrobacter xylanophilus DSM 9941 UBA/THIF-type NAD/FAD binding domain-containing protein YP_643523.1 773317 R 266117 CDS YP_643524.1 108803587 4116569 complement(774545..774820) 1 NC_008148.1 PFAM: thiamineS; KEGG: cyb:CYB_2074 ThiS domain protein; sulfur transfer protein ThiS 774820 4116569 Rxyl_0744 Rubrobacter xylanophilus DSM 9941 sulfur transfer protein ThiS YP_643524.1 774545 R 266117 CDS YP_643525.1 108803588 4116570 complement(774839..775261) 1 NC_008148.1 SMART: Mov34/MPN/PAD-1; KEGG: gvi:gll3414 hypothetical protein; Mov34/MPN/PAD-1 775261 4116570 Rxyl_0745 Rubrobacter xylanophilus DSM 9941 Mov34/MPN/PAD-1 YP_643525.1 774839 R 266117 CDS YP_643526.1 108803589 4116571 complement(775264..776181) 1 NC_008148.1 KEGG: cyb:CYB_2315 putative cysteine synthase B; TIGRFAM: cysteine synthases; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase-like protein 776181 4116571 Rxyl_0746 Rubrobacter xylanophilus DSM 9941 cysteine synthase-like protein YP_643526.1 775264 R 266117 CDS YP_643527.1 108803590 4116572 complement(776351..777073) 1 NC_008148.1 PFAM: Chlorite dismutase; KEGG: dra:DR1481 hypothetical protein; chlorite dismutase 777073 4116572 Rxyl_0747 Rubrobacter xylanophilus DSM 9941 chlorite dismutase YP_643527.1 776351 R 266117 CDS YP_643528.1 108803591 4116573 complement(777077..778066) 1 NC_008148.1 PFAM: aldo/keto reductase; KEGG: nph:NP4488A predicted oxidoreductase 2; aldo/keto reductase 778066 4116573 Rxyl_0748 Rubrobacter xylanophilus DSM 9941 aldo/keto reductase YP_643528.1 777077 R 266117 CDS YP_643529.1 108803592 4116574 778318..779310 1 NC_008148.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: tel:tlr0333 hypothetical protein; rare lipoprotein A 779310 4116574 Rxyl_0749 Rubrobacter xylanophilus DSM 9941 rare lipoprotein A YP_643529.1 778318 D 266117 CDS YP_643530.1 108803593 4116575 779385..780233 1 NC_008148.1 PFAM: 2-phosphosulfolactate phosphatase; KEGG: tma:TM0797 putative 2-phosphosulfolactate phosphatase; 2-phosphosulfolactate phosphatase 780233 4116575 Rxyl_0750 Rubrobacter xylanophilus DSM 9941 2-phosphosulfolactate phosphatase YP_643530.1 779385 D 266117 CDS YP_643531.1 108803594 4116576 complement(780723..781709) 1 NC_008148.1 TIGRFAM: ribonuclease BN, putative; PFAM: ribonuclease BN; KEGG: ppu:PP4560 ribonuclease BN, putative; ribonuclease BN 781709 4116576 Rxyl_0751 Rubrobacter xylanophilus DSM 9941 ribonuclease BN YP_643531.1 780723 R 266117 CDS YP_643532.1 108803595 4116577 781813..783918 1 NC_008148.1 KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM DNA topoisomerase, type IA, central; SMART: DNA topoisomerase, type IA, domain 2 DNA topoisomerase, type IA, DNA-binding Toprim subdomain; DNA topoisomerase III 783918 4116577 Rxyl_0752 Rubrobacter xylanophilus DSM 9941 DNA topoisomerase III YP_643532.1 781813 D 266117 CDS YP_643533.1 108803596 4116578 783978..785210 1 NC_008148.1 PFAM: amine oxidase; KEGG: cyb:CYB_1193 amine oxidase, flavin-containing; amine oxidase 785210 4116578 Rxyl_0753 Rubrobacter xylanophilus DSM 9941 amine oxidase YP_643533.1 783978 D 266117 CDS YP_643534.1 108803597 4116579 785210..785947 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: nph:NP0748A ABC-type transport system ATP-binding protein; ABC transporter-like protein 785947 4116579 Rxyl_0754 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643534.1 785210 D 266117 CDS YP_643535.1 108803598 4116580 785937..786701 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: noc:Noc_2833 ABC transporter, inner membrane subunit; ABC transporter 786701 4116580 Rxyl_0755 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_643535.1 785937 D 266117 CDS YP_643536.1 108803599 4116581 786733..787869 1 NC_008148.1 KEGG: fra:Francci3_4524 hypothetical protein; hypothetical protein 787869 4116581 Rxyl_0756 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643536.1 786733 D 266117 CDS YP_643537.1 108803600 4116893 788000..789577 1 NC_008148.1 TIGRFAM: choline/carnitine/betaine transport; PFAM: BCCT transporter; KEGG: cvi:CV4302 high-affinity choline transport protein; choline/carnitine/betaine transport protein 789577 4116893 Rxyl_0757 Rubrobacter xylanophilus DSM 9941 choline/carnitine/betaine transport protein YP_643537.1 788000 D 266117 CDS YP_643538.1 108803601 4116894 789628..791199 1 NC_008148.1 PFAM: glucose-methanol-choline oxidoreductase FAD dependent oxidoreductase GMC oxidoreductase; KEGG: sma:SAV1621 putative oxidoreductase; glucose-methanol-choline oxidoreductase 791199 4116894 Rxyl_0758 Rubrobacter xylanophilus DSM 9941 glucose-methanol-choline oxidoreductase YP_643538.1 789628 D 266117 CDS YP_643539.1 108803602 4116895 791196..792650 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: gka:GK0374 aldehyde dehydrogenase; nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase 792650 4116895 Rxyl_0759 Rubrobacter xylanophilus DSM 9941 nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase YP_643539.1 791196 D 266117 CDS YP_643540.1 108803603 4116896 complement(792610..793500) 1 NC_008148.1 PFAM: aminotransferase, class IV; KEGG: rru:Rru_A1131 aminotransferase, class IV; class IV aminotransferase 793500 4116896 Rxyl_0760 Rubrobacter xylanophilus DSM 9941 class IV aminotransferase YP_643540.1 792610 R 266117 CDS YP_643541.1 108803604 4116897 complement(793497..794939) 1 NC_008148.1 KEGG: mta:Moth_2108 para-aminobenzoate synthase component I; TIGRFAM: para-aminobenzoate synthase, component I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; aminodeoxychorismate synthase subunit I 794939 4116897 Rxyl_0761 Rubrobacter xylanophilus DSM 9941 aminodeoxychorismate synthase subunit I YP_643541.1 793497 R 266117 CDS YP_643542.1 108803605 4116898 795211..797649 1 NC_008148.1 PFAM: FAD dependent oxidoreductase glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV6951 putative sarcosine dehydrogenase; FAD dependent oxidoreductase 797649 4116898 Rxyl_0762 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_643542.1 795211 D 266117 CDS YP_643543.1 108803606 4116899 797661..798626 1 NC_008148.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 798626 4116899 Rxyl_0763 Rubrobacter xylanophilus DSM 9941 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_643543.1 797661 D 266117 CDS YP_643544.1 108803607 4116900 798706..799911 1 NC_008148.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sil:SPO1648 aminomethyl transferase family protein; aminomethyltransferase 799911 4116900 Rxyl_0764 Rubrobacter xylanophilus DSM 9941 aminomethyltransferase YP_643544.1 798706 D 266117 CDS YP_643545.1 108803608 4116901 800009..800983 1 NC_008148.1 PFAM: methylenetetrahydrofolate reductase; KEGG: hma:pNG7363 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 800983 4116901 Rxyl_0765 Rubrobacter xylanophilus DSM 9941 methylenetetrahydrofolate reductase YP_643545.1 800009 D 266117 CDS YP_643546.1 108803609 4116902 800987..802717 1 NC_008148.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 802717 4116902 Rxyl_0766 Rubrobacter xylanophilus DSM 9941 formate--tetrahydrofolate ligase YP_643546.1 800987 D 266117 CDS YP_643547.1 108803610 4116903 802788..804116 1 NC_008148.1 KEGG: mlo:mlr4790 aminomethyltransferase; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage system T protein 804116 4116903 Rxyl_0767 Rubrobacter xylanophilus DSM 9941 glycine cleavage system T protein YP_643547.1 802788 D 266117 CDS YP_643548.1 108803611 4116904 804113..805399 1 NC_008148.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 805399 solA 4116904 solA Rubrobacter xylanophilus DSM 9941 N-methyltryptophan oxidase YP_643548.1 804113 D 266117 CDS YP_643549.1 108803612 4116905 805439..806221 1 NC_008148.1 PFAM: regulatory proteins, IclR; KEGG: sma:SAV6954 putative IclR-family transcriptional regulator; IclR family transcriptional regulator 806221 4116905 Rxyl_0769 Rubrobacter xylanophilus DSM 9941 IclR family transcriptional regulator YP_643549.1 805439 D 266117 CDS YP_643550.1 108803613 4116906 complement(806321..807781) 1 NC_008148.1 PFAM: sulfatase; KEGG: dde:Dde_1201 sulfatase, putative; sulfatase 807781 4116906 Rxyl_0770 Rubrobacter xylanophilus DSM 9941 sulfatase YP_643550.1 806321 R 266117 CDS YP_643551.1 108803614 4116907 808266..809051 1 NC_008148.1 KEGG: sso:SSO2555 hypothetical protein; hypothetical protein 809051 4116907 Rxyl_0771 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643551.1 808266 D 266117 CDS YP_643552.1 108803615 4116908 809048..810013 1 NC_008148.1 KEGG: sto:ST0670 hypothetical protein; hypothetical protein 810013 4116908 Rxyl_0772 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643552.1 809048 D 266117 CDS YP_643553.1 108803616 4116909 810033..811637 1 NC_008148.1 PFAM: amino acid permease-associated region; KEGG: sto:ST1858 hypothetical protein; amino acid permease-associated protein 811637 4116909 Rxyl_0773 Rubrobacter xylanophilus DSM 9941 amino acid permease-associated protein YP_643553.1 810033 D 266117 CDS YP_643554.1 108803617 4116910 complement(811640..812371) 1 NC_008148.1 KEGG: jan:Jann_0339 hypothetical protein; hypothetical protein 812371 4116910 Rxyl_0774 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643554.1 811640 R 266117 CDS YP_643555.1 108803618 4116911 complement(812380..813780) 1 NC_008148.1 KEGG: cgb:cg2499 glycyl-tRNA synthetase (glycine--tRNA ligase); TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding; glycyl-tRNA synthetase 813780 4116911 Rxyl_0775 Rubrobacter xylanophilus DSM 9941 glycyl-tRNA synthetase YP_643555.1 812380 R 266117 CDS YP_643556.1 108803619 4116912 813902..814468 1 NC_008148.1 KEGG: dra:DR2371 hypothetical protein; hypothetical protein 814468 4116912 Rxyl_0776 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643556.1 813902 D 266117 CDS YP_643557.1 108803620 4116990 814491..815444 1 NC_008148.1 catalyzes the formation of 2-phospho-D-glyceroyl phosphate from ATP and 2-phospho-D-glycerate; 2-phosphoglycerate kinase 815444 4116990 Rxyl_0777 Rubrobacter xylanophilus DSM 9941 2-phosphoglycerate kinase YP_643557.1 814491 D 266117 CDS YP_643558.1 108803621 4116991 815497..815865 1 NC_008148.1 hypothetical protein 815865 4116991 Rxyl_0778 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643558.1 815497 D 266117 CDS YP_643559.1 108803622 4116992 815862..816473 1 NC_008148.1 hypothetical protein 816473 4116992 Rxyl_0779 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643559.1 815862 D 266117 CDS YP_643560.1 108803623 4116993 complement(816445..816942) 1 NC_008148.1 hypothetical protein 816942 4116993 Rxyl_0780 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643560.1 816445 R 266117 CDS YP_643561.1 108803624 4116994 complement(816939..818105) 1 NC_008148.1 hypothetical protein 818105 4116994 Rxyl_0781 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643561.1 816939 R 266117 CDS YP_643562.1 108803625 4116995 complement(818095..819849) 1 NC_008148.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold-4 PAS fold; KEGG: sth:STH3307 two-component sensor histidine kinase; PAS/PAC sensor signal transduction histidine kinase 819849 4116995 Rxyl_0782 Rubrobacter xylanophilus DSM 9941 PAS/PAC sensor signal transduction histidine kinase YP_643562.1 818095 R 266117 CDS YP_643563.1 108803626 4116996 complement(819974..820669) 1 NC_008148.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: sth:STH750 two-component response regulator, probably involved in phosphate sensing; two component transcriptional regulator 820669 4116996 Rxyl_0783 Rubrobacter xylanophilus DSM 9941 two component transcriptional regulator YP_643563.1 819974 R 266117 CDS YP_643564.1 108803627 4116997 820840..822750 1 NC_008148.1 TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70; KEGG: pca:Pcar_0107 chaperone protein DnaK; chaperone DnaK 822750 4116997 Rxyl_0784 Rubrobacter xylanophilus DSM 9941 chaperone DnaK YP_643564.1 820840 D 266117 CDS YP_643565.1 108803628 4116998 822856..823479 1 NC_008148.1 PFAM: GrpE protein; KEGG: sth:STH503 heat-shock protein; GrpE protein HSP-70 cofactor 823479 4116998 Rxyl_0785 Rubrobacter xylanophilus DSM 9941 GrpE protein HSP-70 cofactor YP_643565.1 822856 D 266117 CDS YP_643566.1 108803629 4116999 823510..824631 1 NC_008148.1 TIGRFAM: Chaperone DnaJ; PFAM: DnaJ central region heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: nfa:nfa54070 putative heat shock protein; chaperone DnaJ 824631 4116999 Rxyl_0786 Rubrobacter xylanophilus DSM 9941 chaperone DnaJ YP_643566.1 823510 D 266117 CDS YP_643567.1 108803630 4117000 824622..825032 1 NC_008148.1 PFAM: regulatory protein, MerR; KEGG: ttj:TTHA0508 transcriptional regulator, MerR family; MerR family transcriptional regulator 825032 4117000 Rxyl_0787 Rubrobacter xylanophilus DSM 9941 MerR family transcriptional regulator YP_643567.1 824622 D 266117 CDS YP_643568.1 108803631 4117001 825033..825515 1 NC_008148.1 KEGG: fra:Francci3_4443 rhomboid-like protein; hypothetical protein 825515 4117001 Rxyl_0788 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643568.1 825033 D 266117 CDS YP_643569.1 108803632 4117002 825790..826323 1 NC_008148.1 KEGG: mta:Moth_0937 vacuolar-type H+-ATPase subunit H; vacuolar-type H+-ATPase subunit H 826323 4117002 Rxyl_0789 Rubrobacter xylanophilus DSM 9941 vacuolar-type H+-ATPase subunit H YP_643569.1 825790 D 266117 CDS YP_643570.1 108803633 4117003 complement(826416..827150) 1 NC_008148.1 hypothetical protein 827150 4117003 Rxyl_0790 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643570.1 826416 R 266117 CDS YP_643571.1 108803634 4117004 complement(827155..827952) 1 NC_008148.1 PFAM: protein of unknown function DUF62; KEGG: tfu:Tfu_0222 hypothetical protein; hypothetical protein 827952 4117004 Rxyl_0791 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643571.1 827155 R 266117 CDS YP_643572.1 108803635 4117005 complement(827981..828994) 1 NC_008148.1 PFAM: Methicillin resistance protein; KEGG: mta:Moth_2408 methicillin resistance protein; methicillin resistance protein 828994 4117005 Rxyl_0792 Rubrobacter xylanophilus DSM 9941 methicillin resistance protein YP_643572.1 827981 R 266117 CDS YP_643573.1 108803636 4117006 complement(829418..830983) 1 NC_008148.1 PFAM: glycosyl transferase, family 2 GAF GtrA-like protein; KEGG: tko:TK1909 dolichol-phosphate mannosyltransferase, fused to membrane-bound GtrA-like domain; putative GAF sensor protein 830983 4117006 Rxyl_0793 Rubrobacter xylanophilus DSM 9941 putative GAF sensor protein YP_643573.1 829418 R 266117 CDS YP_643574.1 108803637 4117007 831036..831368 1 NC_008148.1 PFAM: acylphosphatase; KEGG: ade:Adeh_0694 acylphosphatase; acylphosphatase 831368 4117007 Rxyl_0794 Rubrobacter xylanophilus DSM 9941 acylphosphatase YP_643574.1 831036 D 266117 CDS YP_643575.1 108803638 4117008 831365..832300 1 NC_008148.1 PFAM: ribonuclease HII/HIII; KEGG: gka:GK2697 ribonuclease HIII (RNase HIII); RNase HII 832300 4117008 Rxyl_0795 Rubrobacter xylanophilus DSM 9941 RNase HII YP_643575.1 831365 D 266117 CDS YP_643576.1 108803639 4116172 832297..833319 1 NC_008148.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: tma:TM1744 L-allo-threonine aldolase; L-threonine aldolase 833319 4116172 Rxyl_0796 Rubrobacter xylanophilus DSM 9941 L-threonine aldolase YP_643576.1 832297 D 266117 CDS YP_643577.1 108803640 4116173 833316..833789 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gvi:glr3626 hypothetical protein; N-acetyltransferase GCN5 833789 4116173 Rxyl_0797 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_643577.1 833316 D 266117 CDS YP_643578.1 108803641 4116174 complement(833722..834246) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ana:all4217 hypothetical protein; N-acetyltransferase GCN5 834246 4116174 Rxyl_0798 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_643578.1 833722 R 266117 CDS YP_643579.1 108803642 4116175 834712..836550 1 NC_008148.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II sugar isomerase (SIS); KEGG: ttj:TTHA1896 glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; glutamine--fructose-6-phosphate transaminase 836550 4116175 Rxyl_0799 Rubrobacter xylanophilus DSM 9941 glutamine--fructose-6-phosphate transaminase YP_643579.1 834712 D 266117 CDS YP_643580.1 108803643 4116176 complement(836551..837429) 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: diacylglycerol kinase, catalytic region; KEGG: sth:STH2424 hypothetical protein; hypothetical protein 837429 4116176 Rxyl_0800 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643580.1 836551 R 266117 CDS YP_643581.1 108803644 4116177 837476..837892 1 NC_008148.1 TIGRFAM: holo-(acyl-carrier-protein) synthase phosphopantethiene--protein transferase domain; PFAM: 4'-phosphopantetheinyl transferase; KEGG: sth:STH2938 holo-(acyl-carrier-protein) synthase; holo-(acyl-carrier-protein) synthase 837892 4116177 Rxyl_0801 Rubrobacter xylanophilus DSM 9941 holo-(acyl-carrier-protein) synthase YP_643581.1 837476 D 266117 CDS YP_643582.1 108803645 4116178 837915..839438 1 NC_008148.1 PFAM: protein of unknown function UPF0031 YjeF-related protein-like; KEGG: gme:Gmet_1883 hypothetical protein; YjeF-like protein 839438 4116178 Rxyl_0802 Rubrobacter xylanophilus DSM 9941 YjeF-like protein YP_643582.1 837915 D 266117 CDS YP_643583.1 108803646 4116179 839465..839947 1 NC_008148.1 PFAM: CBS; KEGG: ava:Ava_1889 predicted signal transduction protein containing CBS domains; signal transduction protein 839947 4116179 Rxyl_0803 Rubrobacter xylanophilus DSM 9941 signal transduction protein YP_643583.1 839465 D 266117 CDS YP_643584.1 108803647 4116180 839958..841055 1 NC_008148.1 KEGG: sth:STH2936 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase-like; alanine racemase 841055 4116180 Rxyl_0804 Rubrobacter xylanophilus DSM 9941 alanine racemase YP_643584.1 839958 D 266117 CDS YP_643585.1 108803648 4116181 841039..841371 1 NC_008148.1 hypothetical protein 841371 4116181 Rxyl_0805 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643585.1 841039 D 266117 CDS YP_643586.1 108803649 4116182 841371..842114 1 NC_008148.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: gvi:gll2924 tRNA nucleotidyltransferase (CCA-adding enzyme); metal dependent phosphohydrolase 842114 4116182 Rxyl_0806 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_643586.1 841371 D 266117 CDS YP_643587.1 108803650 4116183 842152..842385 1 NC_008148.1 PFAM: PspC; KEGG: xoo:XOO2222 hypothetical protein; phage shock protein C, PspC 842385 4116183 Rxyl_0807 Rubrobacter xylanophilus DSM 9941 phage shock protein C, PspC YP_643587.1 842152 D 266117 CDS YP_643588.1 108803651 4116184 842391..843020 1 NC_008148.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cvi:CV3454 probable DNA-directed DNA polymerase, bacteriophage-type; phage SPO1 DNA polymerase-like protein 843020 4116184 Rxyl_0808 Rubrobacter xylanophilus DSM 9941 phage SPO1 DNA polymerase-like protein YP_643588.1 842391 D 266117 CDS YP_643589.1 108803652 4116185 843022..843468 1 NC_008148.1 PFAM: protein of unknown function UPF0079; KEGG: mta:Moth_2160 protein of unknown function UPF0079; hypothetical protein 843468 4116185 Rxyl_0809 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643589.1 843022 D 266117 CDS YP_643590.1 108803653 4116186 843462..844133 1 NC_008148.1 PFAM: peptidase M22, glycoprotease; KEGG: sme:SMc01118 hypothetical protein; peptidase M22, glycoprotease 844133 4116186 Rxyl_0810 Rubrobacter xylanophilus DSM 9941 peptidase M22, glycoprotease YP_643590.1 843462 D 266117 CDS YP_643591.1 108803654 4116187 844145..844588 1 NC_008148.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3563 ribosomal-protein-alanine acetyltransferase; 30S ribosomal protein S18 844588 4116187 Rxyl_0811 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S18 YP_643591.1 844145 D 266117 CDS YP_643592.1 108803655 4116188 844809..845798 1 NC_008148.1 KEGG: cpe:CPE2232 probable glycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, putative, glycoprotease family; PFAM: peptidase M22, glycoprotease; O-sialoglycoprotein endopeptidase 845798 4116188 Rxyl_0812 Rubrobacter xylanophilus DSM 9941 O-sialoglycoprotein endopeptidase YP_643592.1 844809 D 266117 CDS YP_643593.1 108803656 4116189 845882..847528 1 NC_008148.1 PFAM: peptidase M23B; KEGG: sth:STH1076 hypothetical protein; peptidase M23B 847528 4116189 Rxyl_0813 Rubrobacter xylanophilus DSM 9941 peptidase M23B YP_643593.1 845882 D 266117 CDS YP_643594.1 108803657 4116190 847856..849478 1 NC_008148.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: tte:TTE0580 chaperonin GroEL (HSP60 family); chaperonin GroEL 849478 4116190 Rxyl_0814 Rubrobacter xylanophilus DSM 9941 chaperonin GroEL YP_643594.1 847856 D 266117 CDS YP_643595.1 108803658 4116191 849866..851026 1 NC_008148.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 851026 4116191 Rxyl_0815 Rubrobacter xylanophilus DSM 9941 inosine 5-monophosphate dehydrogenase YP_643595.1 849866 D 266117 CDS YP_643596.1 108803659 4117068 851032..852552 1 NC_008148.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 852552 guaA 4117068 guaA Rubrobacter xylanophilus DSM 9941 GMP synthase YP_643596.1 851032 D 266117 CDS YP_643597.1 108803660 4117069 852588..853385 1 NC_008148.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcv:XCV0733 putative secreted protein; endonuclease/exonuclease/phosphatase 853385 4117069 Rxyl_0817 Rubrobacter xylanophilus DSM 9941 endonuclease/exonuclease/phosphatase YP_643597.1 852588 D 266117 CDS YP_643598.1 108803661 4117070 853516..854628 1 NC_008148.1 TIGRFAM: Periplasmic phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: gme:Gmet_2701 periplasmic phosphate binding protein; periplasmic phosphate binding protein 854628 4117070 Rxyl_0818 Rubrobacter xylanophilus DSM 9941 periplasmic phosphate binding protein YP_643598.1 853516 D 266117 CDS YP_643599.1 108803662 4117071 854706..855653 1 NC_008148.1 TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_2702 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 855653 4117071 Rxyl_0819 Rubrobacter xylanophilus DSM 9941 phosphate ABC transporter permease YP_643599.1 854706 D 266117 CDS YP_643600.1 108803663 4117072 855650..856525 1 NC_008148.1 TIGRFAM: Phosphate transport system permease protein 2; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV4074 putative phosphate ABC transporter permease protein; phosphate ABC transporter permease 856525 4117072 Rxyl_0820 Rubrobacter xylanophilus DSM 9941 phosphate ABC transporter permease YP_643600.1 855650 D 266117 CDS YP_643601.1 108803664 4117073 856554..857414 1 NC_008148.1 KEGG: tfu:Tfu_2743 phosphate transport system permease protein 1; TIGRFAM: Phosphate transport system permease protein 1; PFAM: ABC transporter related; SMART: ATPase; phosphate ABC transporter permease 857414 4117073 Rxyl_0821 Rubrobacter xylanophilus DSM 9941 phosphate ABC transporter permease YP_643601.1 856554 D 266117 CDS YP_643602.1 108803665 4117074 857419..858114 1 NC_008148.1 KEGG: tfu:Tfu_2908 PhoU; phosphate uptake regulator PhoU 858114 4117074 Rxyl_0822 Rubrobacter xylanophilus DSM 9941 phosphate uptake regulator PhoU YP_643602.1 857419 D 266117 CDS YP_643603.1 108803666 4117075 858184..858636 1 NC_008148.1 PFAM: protein of unknown function UPF0074; KEGG: mta:Moth_1653 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 858636 4117075 Rxyl_0823 Rubrobacter xylanophilus DSM 9941 BadM/Rrf2 family transcriptional regulator YP_643603.1 858184 D 266117 CDS YP_643604.1 108803667 4117076 858693..859295 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: plt:Plut_1626 hypothetical protein; type 12 methyltransferase 859295 4117076 Rxyl_0824 Rubrobacter xylanophilus DSM 9941 type 12 methyltransferase YP_643604.1 858693 D 266117 CDS YP_643605.1 108803668 4117077 859358..861442 1 NC_008148.1 PFAM: UvrD/REP helicase; KEGG: gka:GK0275 ATP-dependent DNA helicase; ATP-dependent DNA helicase PcrA 861442 4117077 Rxyl_0825 Rubrobacter xylanophilus DSM 9941 ATP-dependent DNA helicase PcrA YP_643605.1 859358 D 266117 CDS YP_643606.1 108803669 4117078 861475..863097 1 NC_008148.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 863097 4117078 Rxyl_0826 Rubrobacter xylanophilus DSM 9941 putative manganese-dependent inorganic pyrophosphatase YP_643606.1 861475 D 266117 CDS YP_643607.1 108803670 4117079 863097..863951 1 NC_008148.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: mta:Moth_1516 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 863951 4117079 Rxyl_0827 Rubrobacter xylanophilus DSM 9941 methenyltetrahydrofolate cyclohydrolase YP_643607.1 863097 D 266117 CDS YP_643608.1 108803671 4117080 864019..864912 1 NC_008148.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: mca:MCA2703 serine protease, trypsin family; peptidase S1 and S6, chymotrypsin/Hap 864912 4117080 Rxyl_0828 Rubrobacter xylanophilus DSM 9941 peptidase S1 and S6, chymotrypsin/Hap YP_643608.1 864019 D 266117 CDS YP_643609.1 108803672 4117081 864987..865268 1 NC_008148.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: mpa:MAP3046c glutamyl-tRNA (Gln) amidotransferase subunit C; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 865268 4117081 Rxyl_0829 Rubrobacter xylanophilus DSM 9941 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_643609.1 864987 D 266117 CDS YP_643610.1 108803673 4117082 865273..866718 1 NC_008148.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: mta:Moth_2009 glutamyl-tRNA(Gln) amidotransferase, A subunit; aspartyl/glutamyl-tRNA amidotransferase subunit A 866718 4117082 Rxyl_0830 Rubrobacter xylanophilus DSM 9941 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_643610.1 865273 D 266117 CDS YP_643611.1 108803674 4117083 866802..867782 1 NC_008148.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sth:STH770 LacI family transcriptional repressor; LacI family transcriptional regulator 867782 4117083 Rxyl_0831 Rubrobacter xylanophilus DSM 9941 LacI family transcriptional regulator YP_643611.1 866802 D 266117 CDS YP_643612.1 108803675 4117084 867803..869236 1 NC_008148.1 PFAM: L-fucose isomerase-like L-fucose isomerase, N-terminal_2; KEGG: tma:TM0307 L-fucose isomerase, putative; L-fucose isomerase 869236 4117084 Rxyl_0832 Rubrobacter xylanophilus DSM 9941 L-fucose isomerase YP_643612.1 867803 D 266117 CDS YP_643613.1 108803676 4117085 869233..870729 1 NC_008148.1 PFAM: carbohydrate kinase, FGGY; KEGG: sma:SAV1126 putative xylulose kinase; carbohydrate kinase 870729 4117085 Rxyl_0833 Rubrobacter xylanophilus DSM 9941 carbohydrate kinase YP_643613.1 869233 D 266117 CDS YP_643614.1 108803677 4117086 870749..872254 1 NC_008148.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 872254 gatB 4117086 gatB Rubrobacter xylanophilus DSM 9941 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_643614.1 870749 D 266117 CDS YP_643615.1 108803678 4117126 872262..873503 1 NC_008148.1 KEGG: lxx:Lxx13210 dihydroxy-acid dehydratase protein; dihydroxyacid dehydratase/phosphogluconate dehydratase-like protein 873503 4117126 Rxyl_0835 Rubrobacter xylanophilus DSM 9941 dihydroxyacid dehydratase/phosphogluconate dehydratase-like protein YP_643615.1 872262 D 266117 CDS YP_643616.1 108803679 4117127 873591..874793 1 NC_008148.1 PFAM: aminotransferase, class V; KEGG: tma:TM1400 putative aminotransferase; phosphoserine aminotransferase/L-aspartate aminotransferase 874793 4117127 Rxyl_0836 Rubrobacter xylanophilus DSM 9941 phosphoserine aminotransferase/L-aspartate aminotransferase YP_643616.1 873591 D 266117 CDS YP_643617.1 108803680 4117128 874790..876373 1 NC_008148.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 876373 4117128 Rxyl_0837 Rubrobacter xylanophilus DSM 9941 D-3-phosphoglycerate dehydrogenase YP_643617.1 874790 D 266117 CDS YP_643618.1 108803681 4117129 complement(876429..876827) 1 NC_008148.1 KEGG: cef:CE2216 hypothetical protein; hypothetical protein 876827 4117129 Rxyl_0838 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643618.1 876429 R 266117 CDS YP_643619.1 108803682 4117130 876994..877209 1 NC_008148.1 hypothetical protein 877209 4117130 Rxyl_0839 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643619.1 876994 D 266117 CDS YP_643620.1 108803683 4117131 complement(877865..879022) 1 NC_008148.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: pto:PTO0186 methionine synthase; methionine synthase (B12-independent) 879022 4117131 Rxyl_0841 Rubrobacter xylanophilus DSM 9941 methionine synthase (B12-independent) YP_643620.1 877865 R 266117 CDS YP_643621.1 108803684 4117132 complement(879026..879961) 1 NC_008148.1 PFAM: Cobalamin-independent synthase MetE-like; KEGG: ape:APE2050 hypothetical protein; cobalamin-independent synthase MetE-like protein 879961 4117132 Rxyl_0842 Rubrobacter xylanophilus DSM 9941 cobalamin-independent synthase MetE-like protein YP_643621.1 879026 R 266117 CDS YP_643622.1 108803685 4117133 complement(880005..881840) 1 NC_008148.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase 881840 4117133 Rxyl_0843 Rubrobacter xylanophilus DSM 9941 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase YP_643622.1 880005 R 266117 CDS YP_643623.1 108803686 4117134 complement(882062..883003) 1 NC_008148.1 PFAM: Squalene/phytoene synthase; KEGG: plt:Plut_1356 phytoene desaturase; phytoene synthase 883003 4117134 Rxyl_0844 Rubrobacter xylanophilus DSM 9941 phytoene synthase YP_643623.1 882062 R 266117 CDS YP_643624.1 108803687 4117135 complement(883000..884478) 1 NC_008148.1 PFAM: amine oxidase FAD dependent oxidoreductase; KEGG: lpl:lp_3262 squalene synthase; amine oxidase 884478 4117135 Rxyl_0845 Rubrobacter xylanophilus DSM 9941 amine oxidase YP_643624.1 883000 R 266117 CDS YP_643625.1 108803688 4117136 884597..885772 1 NC_008148.1 PFAM: conserved hypothetical protein 95 methyltransferase small; SMART: PUA; KEGG: ade:Adeh_3722 hypothetical protein; SAM-dependent methyltransferase 885772 4117136 Rxyl_0846 Rubrobacter xylanophilus DSM 9941 SAM-dependent methyltransferase YP_643625.1 884597 D 266117 CDS YP_643626.1 108803689 4117137 complement(885777..888344) 1 NC_008148.1 PFAM: protein of unknown function DUF214; KEGG: fra:Francci3_2636 protein of unknown function DUF214; hypothetical protein 888344 4117137 Rxyl_0847 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643626.1 885777 R 266117 CDS YP_643627.1 108803690 4117138 complement(888346..889095) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO4666 putative ABC-transporter ATP-binding protein; ABC transporter-like protein 889095 4117138 Rxyl_0848 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643627.1 888346 R 266117 CDS YP_643628.1 108803691 4117139 889168..889611 1 NC_008148.1 PFAM: ribosomal protein S6; KEGG: chy:CHY_0035 ribosomal protein S6; 30S ribosomal protein S6 889611 4117139 Rxyl_0849 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S6 YP_643628.1 889168 D 266117 CDS YP_643629.1 108803692 4117140 889634..889879 1 NC_008148.1 PFAM: ribosomal protein S18; KEGG: sma:SAV4287 putative ribosomal protein S18; 30S ribosomal protein S18 889879 4117140 Rxyl_0850 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S18 YP_643629.1 889634 D 266117 CDS YP_643630.1 108803693 4117141 889896..890345 1 NC_008148.1 PFAM: ribosomal protein L9; KEGG: ade:Adeh_0116 ribosomal protein L9; 50S ribosomal protein L9 890345 4117141 Rxyl_0851 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L9 YP_643630.1 889896 D 266117 CDS YP_643631.1 108803694 4117142 890490..891821 1 NC_008148.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase-like; KEGG: tte:TTE2774 replicative DNA helicase; primary replicative DNA helicase 891821 4117142 Rxyl_0852 Rubrobacter xylanophilus DSM 9941 primary replicative DNA helicase YP_643631.1 890490 D 266117 CDS YP_643632.1 108803695 4117143 complement(891828..892607) 1 NC_008148.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 892607 4117143 Rxyl_0853 Rubrobacter xylanophilus DSM 9941 enoyl-(acyl carrier protein) reductase YP_643632.1 891828 R 266117 CDS YP_643633.1 108803696 4117144 complement(892711..894729) 1 NC_008148.1 PFAM: sulfatase; KEGG: ppu:PP1033 sulfatase domain protein; sulfatase 894729 4117144 Rxyl_0854 Rubrobacter xylanophilus DSM 9941 sulfatase YP_643633.1 892711 R 266117 CDS YP_643634.1 108803697 4117145 894806..895339 1 NC_008148.1 PFAM: Tetratricopeptide TPR_2; hypothetical protein 895339 4117145 Rxyl_0855 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643634.1 894806 D 266117 CDS YP_643635.1 108803698 4117186 895446..897380 1 NC_008148.1 TIGRFAM: Acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sth:STH881 acetyl-coenzyme A synthetase; acetyl-coenzyme A synthetase 897380 4117186 Rxyl_0856 Rubrobacter xylanophilus DSM 9941 acetyl-coenzyme A synthetase YP_643635.1 895446 D 266117 CDS YP_643636.1 108803699 4117187 complement(897445..897726) 1 NC_008148.1 PFAM: Peptidoglycan-binding LysM; KEGG: sth:STH1735 hypothetical protein; peptidoglycan-binding LysM 897726 4117187 Rxyl_0857 Rubrobacter xylanophilus DSM 9941 peptidoglycan-binding LysM YP_643636.1 897445 R 266117 CDS YP_643637.1 108803700 4117188 897892..898536 1 NC_008148.1 PFAM: peptidase, membrane zinc metallopeptidase, putative; KEGG: tth:TTC0540 hypothetical membrane spanning protein; peptidase, membrane zinc metallopeptidase 898536 4117188 Rxyl_0858 Rubrobacter xylanophilus DSM 9941 peptidase, membrane zinc metallopeptidase YP_643637.1 897892 D 266117 CDS YP_643638.1 108803701 4117189 898646..899269 1 NC_008148.1 hypothetical protein 899269 4117189 Rxyl_0859 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643638.1 898646 D 266117 CDS YP_643639.1 108803702 4117190 899289..899993 1 NC_008148.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: syw:SYNW0275 global nitrogen regulatory protein, CRP family of transcriptional regulators; Crp/FNR family transcriptional regulator 899993 4117190 Rxyl_0860 Rubrobacter xylanophilus DSM 9941 Crp/FNR family transcriptional regulator YP_643639.1 899289 D 266117 CDS YP_643640.1 108803703 4117191 complement(899990..901351) 1 NC_008148.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: chy:CHY_0160 HDIG domain protein; metal dependent phosphohydrolase 901351 4117191 Rxyl_0861 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_643640.1 899990 R 266117 CDS YP_643641.1 108803704 4117192 902022..903671 1 NC_008148.1 KEGG: ade:Adeh_2860 hypothetical protein; hypothetical protein 903671 4117192 Rxyl_0862 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643641.1 902022 D 266117 CDS YP_643642.1 108803705 4117193 903757..904365 1 NC_008148.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: gka:GK0150 DNA-directed RNA polymerase ECF-type sigma factor (sigma-W); ECF subfamily RNA polymerase sigma-24 factor 904365 4117193 Rxyl_0863 Rubrobacter xylanophilus DSM 9941 ECF subfamily RNA polymerase sigma-24 factor YP_643642.1 903757 D 266117 CDS YP_643643.1 108803706 4117194 904362..904862 1 NC_008148.1 hypothetical protein 904862 4117194 Rxyl_0864 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643643.1 904362 D 266117 CDS YP_643644.1 108803707 4117195 904859..905926 1 NC_008148.1 KEGG: hma:rrnAC0202 hypothetical protein; hypothetical protein 905926 4117195 Rxyl_0865 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643644.1 904859 D 266117 CDS YP_643645.1 108803708 4117196 906182..907903 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: gka:GK0811 oligopeptide ABC transporter (oligopeptide-binding protein); twin-arginine translocation pathway signal protein 907903 4117196 Rxyl_0866 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_643645.1 906182 D 266117 CDS YP_643646.1 108803709 4117197 907994..908920 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK0812 oligopeptide ABC transporter (permease); binding-protein-dependent transport system inner membrane protein 908920 4117197 Rxyl_0867 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643646.1 907994 D 266117 CDS YP_643647.1 108803710 4117198 908917..909861 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK0813 oligopeptide ABC transporter (permease); binding-protein-dependent transport system inner membrane protein 909861 4117198 Rxyl_0868 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643647.1 908917 D 266117 CDS YP_643648.1 108803711 4117199 909864..910895 1 NC_008148.1 KEGG: gka:GK0814 oligopeptide ABC transporter (ATP-binding protein); TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 910895 4117199 Rxyl_0869 Rubrobacter xylanophilus DSM 9941 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_643648.1 909864 D 266117 CDS YP_643649.1 108803712 4117200 910892..911860 1 NC_008148.1 KEGG: bcl:ABC0783 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 911860 4117200 Rxyl_0870 Rubrobacter xylanophilus DSM 9941 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_643649.1 910892 D 266117 CDS YP_643650.1 108803713 4117201 911857..912723 1 NC_008148.1 PFAM: protein of unknown function DUF1028; KEGG: gka:GK1588 hypothetical protein; hypothetical protein 912723 4117201 Rxyl_0871 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643650.1 911857 D 266117 CDS YP_643651.1 108803714 4117202 912890..914515 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bld:BLi01226 oligopeptide ABC transporter (oligopeptide-binding protein); RBL00623; extracellular solute-binding protein 914515 4117202 Rxyl_0872 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_643651.1 912890 D 266117 CDS YP_643652.1 108803715 4117203 914643..915605 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttj:TTHA1633 peptide ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 915605 4117203 Rxyl_0873 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport systems inner membrane component YP_643652.1 914643 D 266117 CDS YP_643653.1 108803716 4117204 915623..916555 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU1435 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 916555 4117204 Rxyl_0874 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643653.1 915623 D 266117 CDS YP_643654.1 108803717 4116970 916557..917576 1 NC_008148.1 KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 917576 4116970 Rxyl_0875 Rubrobacter xylanophilus DSM 9941 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_643654.1 916557 D 266117 CDS YP_643655.1 108803718 4116971 917573..918610 1 NC_008148.1 KEGG: sth:STH2823 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 918610 4116971 Rxyl_0876 Rubrobacter xylanophilus DSM 9941 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_643655.1 917573 D 266117 CDS YP_643656.1 108803719 4116972 918649..919902 1 NC_008148.1 KEGG: bld:BLi02281 carboxy-terminal processing protease; RBL02710; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; carboxyl-terminal protease 919902 4116972 Rxyl_0877 Rubrobacter xylanophilus DSM 9941 carboxyl-terminal protease YP_643656.1 918649 D 266117 CDS YP_643657.1 108803720 4116973 919951..920409 1 NC_008148.1 KEGG: tfu:Tfu_0892 hypothetical protein; hypothetical protein 920409 4116973 Rxyl_0878 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643657.1 919951 D 266117 CDS YP_643658.1 108803721 4116974 complement(920658..921755) 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit 921755 4116974 Rxyl_0879 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_643658.1 920658 R 266117 CDS YP_643659.1 108803722 4116975 921780..922634 1 NC_008148.1 KEGG: sth:STH2507 hypothetical protein; GTPase domain-containing protein 922634 4116975 Rxyl_0880 Rubrobacter xylanophilus DSM 9941 GTPase domain-containing protein YP_643659.1 921780 D 266117 CDS YP_643660.1 108803723 4116976 complement(922691..923197) 1 NC_008148.1 PFAM: regulatory protein, MarR; KEGG: bja:bll4976 transcriptional regulatory protein; MarR family transcriptional regulator 923197 4116976 Rxyl_0881 Rubrobacter xylanophilus DSM 9941 MarR family transcriptional regulator YP_643660.1 922691 R 266117 CDS YP_643661.1 108803724 4116977 923388..924149 1 NC_008148.1 PFAM: regulatory protein, LuxR; KEGG: sma:SAV7331 putative LuxR-family transcriptional regulator; LuxR family transcriptional regulator 924149 4116977 Rxyl_0882 Rubrobacter xylanophilus DSM 9941 LuxR family transcriptional regulator YP_643661.1 923388 D 266117 CDS YP_643662.1 108803725 4116978 924725..925111 1 NC_008148.1 KEGG: nfa:nfa18160 hypothetical protein; hypothetical protein 925111 4116978 Rxyl_0883 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643662.1 924725 D 266117 CDS YP_643663.1 108803726 4116979 925333..925908 1 NC_008148.1 PFAM: protein of unknown function DUF861, cupin_3 Cupin 2, conserved barrel; KEGG: bha:BH0370 hypothetical protein; cupin 2 barrel domain-containing protein 925908 4116979 Rxyl_0884 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_643663.1 925333 D 266117 CDS YP_643664.1 108803727 4116980 925993..926442 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region; twin-arginine translocation pathway signal protein 926442 4116980 Rxyl_0885 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_643664.1 925993 D 266117 CDS YP_643665.1 108803728 4116981 926457..926960 1 NC_008148.1 hypothetical protein 926960 4116981 Rxyl_0886 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643665.1 926457 D 266117 CDS YP_643666.1 108803729 4116982 926977..928257 1 NC_008148.1 KEGG: tfu:Tfu_2817 phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 928257 4116982 Rxyl_0887 Rubrobacter xylanophilus DSM 9941 phospholipase D/transphosphatidylase YP_643666.1 926977 D 266117 CDS YP_643667.1 108803730 4116983 928343..929983 1 NC_008148.1 PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: ade:Adeh_2536 single-stranded-DNA-specific exonuclease RecJ; phosphoesterase, RecJ-like protein 929983 4116983 Rxyl_0888 Rubrobacter xylanophilus DSM 9941 phosphoesterase, RecJ-like protein YP_643667.1 928343 D 266117 CDS YP_643668.1 108803731 4116984 929980..930939 1 NC_008148.1 PFAM: ROK; KEGG: tfu:Tfu_0273 glucokinase ROK; glucokinase 930939 4116984 Rxyl_0889 Rubrobacter xylanophilus DSM 9941 glucokinase YP_643668.1 929980 D 266117 CDS YP_643669.1 108803732 4116985 930946..931746 1 NC_008148.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tte:TTE0104 predicted methyltransferases; hypothetical protein 931746 4116985 Rxyl_0890 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643669.1 930946 D 266117 CDS YP_643670.1 108803733 4116986 931781..932533 1 NC_008148.1 PFAM: TatD-related deoxyribonuclease; KEGG: bba:Bd1042 TatD related DNase; Sec-independent protein translocase TatD 932533 4116986 Rxyl_0891 Rubrobacter xylanophilus DSM 9941 Sec-independent protein translocase TatD YP_643670.1 931781 D 266117 CDS YP_643671.1 108803734 4116987 932530..933318 1 NC_008148.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: chy:CHY_2616 dimethyladenosine transferase; dimethyladenosine transferase 933318 4116987 Rxyl_0892 Rubrobacter xylanophilus DSM 9941 dimethyladenosine transferase YP_643671.1 932530 D 266117 CDS YP_643672.1 108803735 4116988 933315..934193 1 NC_008148.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase GHMP kinase, C terminal; KEGG: mta:Moth_0072 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 934193 4116988 Rxyl_0893 Rubrobacter xylanophilus DSM 9941 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_643672.1 933315 D 266117 CDS YP_643673.1 108803736 4116989 934360..935766 1 NC_008148.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase transferase hexapeptide repeat Nucleotidyl transferase; KEGG: tte:TTE2572 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase 935766 4116989 Rxyl_0894 Rubrobacter xylanophilus DSM 9941 glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase YP_643673.1 934360 D 266117 CDS YP_643674.1 108803737 4116718 935775..936770 1 NC_008148.1 KEGG: cac:CAC3221 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 936770 4116718 Rxyl_0895 Rubrobacter xylanophilus DSM 9941 ribose-phosphate pyrophosphokinase YP_643674.1 935775 D 266117 CDS YP_643675.1 108803738 4116719 936816..937496 1 NC_008148.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: mta:Moth_0078 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; 50S ribosomal protein L25 937496 4116719 Rxyl_0896 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L25 YP_643675.1 936816 D 266117 CDS YP_643676.1 108803739 4116720 937568..938086 1 NC_008148.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 938086 4116720 Rxyl_0897 Rubrobacter xylanophilus DSM 9941 peptidyl-tRNA hydrolase YP_643676.1 937568 D 266117 CDS YP_643677.1 108803740 4116721 complement(938083..939048) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH protein of unknown function UPF0074; KEGG: sth:STH2673 GntR family transcriptional regulator; GntR family transcriptional regulator 939048 4116721 Rxyl_0898 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643677.1 938083 R 266117 CDS YP_643678.1 108803741 4116722 939134..939703 1 NC_008148.1 hypothetical protein 939703 4116722 Rxyl_0899 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643678.1 939134 D 266117 CDS YP_643679.1 108803742 4116723 939752..940327 1 NC_008148.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: tfu:Tfu_1506 similar to DNA-directed RNA polymerase specialized sigma subunit sigma24 -like protein; ECF subfamily RNA polymerase sigma-24 factor 940327 4116723 Rxyl_0900 Rubrobacter xylanophilus DSM 9941 ECF subfamily RNA polymerase sigma-24 factor YP_643679.1 939752 D 266117 CDS YP_643680.1 108803743 4116724 940324..941088 1 NC_008148.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: tfu:Tfu_1507 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 941088 4116724 Rxyl_0901 Rubrobacter xylanophilus DSM 9941 methylated-DNA--protein-cysteine methyltransferase YP_643680.1 940324 D 266117 CDS YP_643681.1 108803744 4116725 941067..941978 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSc2507 probable transmembrane protein; hypothetical protein 941978 4116725 Rxyl_0902 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643681.1 941067 D 266117 CDS YP_643682.1 108803745 4116726 942029..943393 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2058 hypothetical protein; FAD dependent oxidoreductase 943393 4116726 Rxyl_0903 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_643682.1 942029 D 266117 CDS YP_643683.1 108803746 4116727 943423..944883 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: jan:Jann_3072 aldehyde dehydrogenase; aldehyde dehydrogenase 944883 4116727 Rxyl_0904 Rubrobacter xylanophilus DSM 9941 aldehyde dehydrogenase YP_643683.1 943423 D 266117 CDS YP_643684.1 108803747 4116728 complement(944921..945535) 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nfa:nfa24610 putative hydrolase; HAD family hydrolase 945535 4116728 Rxyl_0905 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_643684.1 944921 R 266117 CDS YP_643685.1 108803748 4116729 complement(945568..945918) 1 NC_008148.1 PFAM: helix-turn-helix, HxlR type; KEGG: fra:Francci3_3884 putative transcriptional regulator; HxlR family transcriptional regulator 945918 4116729 Rxyl_0906 Rubrobacter xylanophilus DSM 9941 HxlR family transcriptional regulator YP_643685.1 945568 R 266117 CDS YP_643686.1 108803749 4116730 946021..946428 1 NC_008148.1 PFAM: DoxX; KEGG: psb:Psyr_2062 DoxD-like family protein; DoxX 946428 4116730 Rxyl_0907 Rubrobacter xylanophilus DSM 9941 DoxX YP_643686.1 946021 D 266117 CDS YP_643687.1 108803750 4116731 complement(946471..946884) 1 NC_008148.1 TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: thioesterase superfamily; KEGG: eba:ebA5330 conserved hypothetical protein, of thioesterase family; phenylacetic acid degradation-like protein 946884 4116731 Rxyl_0908 Rubrobacter xylanophilus DSM 9941 phenylacetic acid degradation-like protein YP_643687.1 946471 R 266117 CDS YP_643688.1 108803751 4116732 947024..950188 1 NC_008148.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase-like transcription factor CarD TRCF type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: mpa:MAP0987 Mfd; transcription-repair coupling factor 950188 4116732 Rxyl_0909 Rubrobacter xylanophilus DSM 9941 transcription-repair coupling factor YP_643688.1 947024 D 266117 CDS YP_643689.1 108803752 4116733 950195..950707 1 NC_008148.1 PFAM: protein of unknown function DUF523; KEGG: bbr:BB4660 hypothetical protein; hypothetical protein 950707 4116733 Rxyl_0910 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643689.1 950195 D 266117 CDS YP_643690.1 108803753 4116734 950725..951789 1 NC_008148.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sth:STH2943 putative post-translocation molecular chaperone; PpiC-type peptidyl-prolyl cis-trans isomerase 951789 4116734 Rxyl_0911 Rubrobacter xylanophilus DSM 9941 PpiC-type peptidyl-prolyl cis-trans isomerase YP_643690.1 950725 D 266117 CDS YP_643691.1 108803754 4116735 951908..953200 1 NC_008148.1 PFAM: enolase; KEGG: ctc:CTC00382 phosphopyruvate hydratase; enolase 953200 4116735 Rxyl_0912 Rubrobacter xylanophilus DSM 9941 enolase YP_643691.1 951908 D 266117 CDS YP_643692.1 108803755 4116736 953197..954630 1 NC_008148.1 PFAM: pyruvate kinase; KEGG: mta:Moth_1867 pyruvate kinase; pyruvate kinase 954630 4116736 Rxyl_0913 Rubrobacter xylanophilus DSM 9941 pyruvate kinase YP_643692.1 953197 D 266117 CDS YP_643693.1 108803756 4117106 954644..954961 1 NC_008148.1 PFAM: Septum formation initiator; KEGG: cjk:jk1482 hypothetical protein; septum formation initiator 954961 4117106 Rxyl_0914 Rubrobacter xylanophilus DSM 9941 septum formation initiator YP_643693.1 954644 D 266117 CDS YP_643694.1 108803757 4117107 954948..955385 1 NC_008148.1 KEGG: tma:TM1078 hypothetical protein; hypothetical protein 955385 4117107 Rxyl_0915 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643694.1 954948 D 266117 CDS YP_643695.1 108803758 4117108 complement(955485..955775) 1 NC_008148.1 hypothetical protein 955775 4117108 Rxyl_0916 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643695.1 955485 R 266117 CDS YP_643696.1 108803759 4117109 955976..956473 1 NC_008148.1 PFAM: UspA; KEGG: mth:MTH993 hypothetical protein; hypothetical protein 956473 4117109 Rxyl_0917 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643696.1 955976 D 266117 CDS YP_643697.1 108803760 4117110 956480..957007 1 NC_008148.1 hypothetical protein 957007 4117110 Rxyl_0918 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643697.1 956480 D 266117 CDS YP_643698.1 108803761 4117111 957109..958320 1 NC_008148.1 TIGRFAM: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: sso:SSO2128 Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like); 2-oxoacid:acceptor oxidoreductase subunit delta 958320 4117111 Rxyl_0919 Rubrobacter xylanophilus DSM 9941 2-oxoacid:acceptor oxidoreductase subunit delta YP_643698.1 957109 D 266117 CDS YP_643699.1 108803762 4117112 958379..959593 1 NC_008148.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase-like; KEGG: sso:SSO2129 Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-like); pyruvate ferredoxin oxidoreductase subunit alpha 959593 4117112 Rxyl_0920 Rubrobacter xylanophilus DSM 9941 pyruvate ferredoxin oxidoreductase subunit alpha YP_643699.1 958379 D 266117 CDS YP_643700.1 108803763 4117113 959618..960808 1 NC_008148.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: sso:SSO2130 Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (porB-like); pyruvate ferredoxin oxidoreductase subunit beta 960808 4117113 Rxyl_0921 Rubrobacter xylanophilus DSM 9941 pyruvate ferredoxin oxidoreductase subunit beta YP_643700.1 959618 D 266117 CDS YP_643701.1 108803764 4117114 complement(960882..961391) 1 NC_008148.1 hypothetical protein 961391 4117114 Rxyl_0922 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643701.1 960882 R 266117 CDS YP_643702.1 108803765 4117115 961617..962822 1 NC_008148.1 PFAM: aminotransferase, class V; KEGG: bbr:BB4671 serine--glyoxylate aminotransferase; class V aminotransferase 962822 4117115 Rxyl_0923 Rubrobacter xylanophilus DSM 9941 class V aminotransferase YP_643702.1 961617 D 266117 CDS YP_643703.1 108803766 4117116 962838..964313 1 NC_008148.1 KEGG: hma:pNG7286 hypothetical protein; hypothetical protein 964313 4117116 Rxyl_0924 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643703.1 962838 D 266117 CDS YP_643704.1 108803767 4117117 964330..964872 1 NC_008148.1 hypothetical protein 964872 4117117 Rxyl_0925 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643704.1 964330 D 266117 CDS YP_643705.1 108803768 4117118 964957..965658 1 NC_008148.1 KEGG: rso:RSc0949 probable transmembrane protein; putative transmembrane protein 965658 4117118 Rxyl_0926 Rubrobacter xylanophilus DSM 9941 putative transmembrane protein YP_643705.1 964957 D 266117 CDS YP_643706.1 108803769 4117119 complement(965655..966122) 1 NC_008148.1 PFAM: helix-turn-helix motif; KEGG: mta:Moth_1627 transcriptional regulator, XRE family; XRE family transcriptional regulator 966122 4117119 Rxyl_0927 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_643706.1 965655 R 266117 CDS YP_643707.1 108803770 4117120 complement(966124..966399) 1 NC_008148.1 hypothetical protein 966399 4117120 Rxyl_0928 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643707.1 966124 R 266117 CDS YP_643708.1 108803771 4117121 complement(966466..967164) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dvu:DVU2785 transcriptional regulator, GntR family; GntR family transcriptional regulator 967164 4117121 Rxyl_0929 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643708.1 966466 R 266117 CDS YP_643709.1 108803772 4117122 967628..967930 1 NC_008148.1 hypothetical protein 967930 4117122 Rxyl_0930 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643709.1 967628 D 266117 CDS YP_643710.1 108803773 4117123 complement(967882..968586) 1 NC_008148.1 PFAM: Phosphoglycerate mutase; KEGG: gvi:gll0992 hypothetical protein; hypothetical protein 968586 4117123 Rxyl_0931 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643710.1 967882 R 266117 CDS YP_643711.1 108803774 4117124 968634..970259 1 NC_008148.1 KEGG: gsu:GSU1489 hypothetical protein; hypothetical protein 970259 4117124 Rxyl_0932 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643711.1 968634 D 266117 CDS YP_643712.1 108803775 4117125 970277..971386 1 NC_008148.1 PFAM: Methionine synthase, vitamin-B12 independent Cobalamin-independent synthase MetE-like; KEGG: rpb:RPB_1584 methionine synthase, vitamin-B12 independent; methionine synthase (B12-independent) 971386 4117125 Rxyl_0933 Rubrobacter xylanophilus DSM 9941 methionine synthase (B12-independent) YP_643712.1 970277 D 266117 CDS YP_643713.1 108803776 4116776 complement(971383..972444) 1 NC_008148.1 PFAM: Allergen V5/Tpx-1 related; KEGG: sma:SAV2660 hypothetical protein; allergen V5/Tpx-1-like protein 972444 4116776 Rxyl_0934 Rubrobacter xylanophilus DSM 9941 allergen V5/Tpx-1-like protein YP_643713.1 971383 R 266117 CDS YP_643714.1 108803777 4116777 972581..974176 1 NC_008148.1 KEGG: gsu:GSU1489 hypothetical protein; hypothetical protein 974176 4116777 Rxyl_0935 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643714.1 972581 D 266117 CDS YP_643715.1 108803778 4116778 complement(974173..975156) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sma:SAV7139 putative oxidoreductase; zinc-binding alcohol dehydrogenase 975156 4116778 Rxyl_0936 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_643715.1 974173 R 266117 CDS YP_643716.1 108803779 4116779 975230..975928 1 NC_008148.1 PFAM: CBS amino acid-binding ACT; KEGG: chy:CHY_0173 acetoin utilization protein AcuB; hypothetical protein 975928 4116779 Rxyl_0937 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643716.1 975230 D 266117 CDS YP_643717.1 108803780 4116780 complement(975925..976833) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: hma:rrnAC3259 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 976833 4116780 Rxyl_0938 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_643717.1 975925 R 266117 CDS YP_643718.1 108803781 4116781 complement(976858..977520) 1 NC_008148.1 KEGG: sco:SCO0633 hypothetical protein; putative transmembrane anti-sigma factor 977520 4116781 Rxyl_0939 Rubrobacter xylanophilus DSM 9941 putative transmembrane anti-sigma factor YP_643718.1 976858 R 266117 CDS YP_643719.1 108803782 4116782 complement(977517..978104) 1 NC_008148.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sil:SPO1478 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor 978104 4116782 Rxyl_0940 Rubrobacter xylanophilus DSM 9941 ECF subfamily RNA polymerase sigma-24 factor YP_643719.1 977517 R 266117 CDS YP_643720.1 108803783 4116783 complement(978211..979236) 1 NC_008148.1 PFAM: luciferase-like; KEGG: mbo:Mb1395 probable oxidoreductase; luciferase-like protein 979236 4116783 Rxyl_0941 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_643720.1 978211 R 266117 CDS YP_643721.1 108803784 4116784 complement(979248..980222) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: tth:TTC1833 quinone oxidoreductase; zinc-binding alcohol dehydrogenase 980222 4116784 Rxyl_0942 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_643721.1 979248 R 266117 CDS YP_643722.1 108803785 4116785 980361..981767 1 NC_008148.1 PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: mta:Moth_0912 serine/threonine protein kinase; serine/threonine protein kinase 981767 4116785 Rxyl_0943 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_643722.1 980361 D 266117 CDS YP_643723.1 108803786 4116786 981834..983417 1 NC_008148.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: rpa:RPA1609 benzoylformate decarboxylase; thiamine pyrophosphate enzyme-like TPP-binding protein 983417 4116786 Rxyl_0944 Rubrobacter xylanophilus DSM 9941 thiamine pyrophosphate enzyme-like TPP-binding protein YP_643723.1 981834 D 266117 CDS YP_643724.1 108803787 4116787 983441..984487 1 NC_008148.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV5320 putative LacI-family transcriptional regulator; LacI family transcriptional regulator 984487 4116787 Rxyl_0945 Rubrobacter xylanophilus DSM 9941 LacI family transcriptional regulator YP_643724.1 983441 D 266117 CDS YP_643725.1 108803788 4116788 984484..985983 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV5319 putative D-ribose ABC transporter ATP-binding protein; ABC transporter-like protein 985983 4116788 Rxyl_0946 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643725.1 984484 D 266117 CDS YP_643726.1 108803789 4116789 985976..986935 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; inner-membrane translocator 986935 4116789 Rxyl_0947 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_643726.1 985976 D 266117 CDS YP_643727.1 108803790 4116790 986947..987882 1 NC_008148.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0206 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator 987882 4116790 Rxyl_0948 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein/LacI transcriptional regulator YP_643727.1 986947 D 266117 CDS YP_643728.1 108803791 4116791 987887..988792 1 NC_008148.1 PFAM: PfkB; KEGG: sma:SAV5317 putative ribokinase; PfkB protein 988792 4116791 Rxyl_0949 Rubrobacter xylanophilus DSM 9941 PfkB protein YP_643728.1 987887 D 266117 CDS YP_643729.1 108803792 4116792 988789..989178 1 NC_008148.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 989178 4116792 Rxyl_0950 Rubrobacter xylanophilus DSM 9941 D-ribose pyranase YP_643729.1 988789 D 266117 CDS YP_643730.1 108803793 4116793 complement(989175..990422) 1 NC_008148.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: par:Psyc_1255 possible TolB periplamsic protein; hypothetical protein 990422 4116793 Rxyl_0951 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643730.1 989175 R 266117 CDS YP_643731.1 108803794 4116794 complement(990511..991329) 1 NC_008148.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: cyb:CYB_0003 hypothetical protein; type 11 methyltransferase 991329 4116794 Rxyl_0952 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_643731.1 990511 R 266117 CDS YP_643732.1 108803795 4115916 complement(991334..991972) 1 NC_008148.1 PFAM: flavin reductase-like, FMN-binding; KEGG: gka:GK3021 hypothetical protein; flavin reductase-like protein 991972 4115916 Rxyl_0953 Rubrobacter xylanophilus DSM 9941 flavin reductase-like protein YP_643732.1 991334 R 266117 CDS YP_643733.1 108803796 4115917 complement(992020..992676) 1 NC_008148.1 KEGG: pmt:PMT0660 esterase/lipase/thioesterase family active site; esterase/lipase/thioesterase family protein 992676 4115917 Rxyl_0954 Rubrobacter xylanophilus DSM 9941 esterase/lipase/thioesterase family protein YP_643733.1 992020 R 266117 CDS YP_643734.1 108803797 4115918 complement(992751..993368) 1 NC_008148.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: sil:SPO2448 membrane protein, MarC family; multiple antibiotic resistance (MarC)-like protein 993368 4115918 Rxyl_0955 Rubrobacter xylanophilus DSM 9941 multiple antibiotic resistance (MarC)-like protein YP_643734.1 992751 R 266117 CDS YP_643735.1 108803798 4115919 complement(993369..995387) 1 NC_008148.1 PFAM: peptidase S9, prolyl oligopeptidase active site region; KEGG: ade:Adeh_0114 peptidase S9, prolyl oligopeptidase; peptidase S9, prolyl oligopeptidase active site region 995387 4115919 Rxyl_0956 Rubrobacter xylanophilus DSM 9941 peptidase S9, prolyl oligopeptidase active site region YP_643735.1 993369 R 266117 CDS YP_643736.1 108803799 4115920 complement(995398..996162) 1 NC_008148.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: hal:VNG2536C hypothetical protein; biotin/lipoate A/B protein ligase 996162 4115920 Rxyl_0957 Rubrobacter xylanophilus DSM 9941 biotin/lipoate A/B protein ligase YP_643736.1 995398 R 266117 CDS YP_643737.1 108803800 4115921 996251..997186 1 NC_008148.1 catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); 2-phospho-L-lactate transferase 997186 4115921 Rxyl_0958 Rubrobacter xylanophilus DSM 9941 2-phospho-L-lactate transferase YP_643737.1 996251 D 266117 CDS YP_643738.1 108803801 4115922 997183..997800 1 NC_008148.1 PFAM: protein of unknown function DUF121; KEGG: eba:p2A342 hypothetical protein; hypothetical protein 997800 4115922 Rxyl_0959 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643738.1 997183 D 266117 CDS YP_643739.1 108803802 4115923 997856..998917 1 NC_008148.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 998917 4115923 Rxyl_0960 Rubrobacter xylanophilus DSM 9941 phospho-2-dehydro-3-deoxyheptonate aldolase YP_643739.1 997856 D 266117 CDS YP_643740.1 108803803 4115924 998931..999665 1 NC_008148.1 TIGRFAM: Uncharacterised conserved protein UCP005026; PFAM: protein of unknown function DUF129; KEGG: mth:MTH1019 hypothetical protein; coenzyme F420-0 gamma-glutamyl ligase 999665 4115924 Rxyl_0961 Rubrobacter xylanophilus DSM 9941 coenzyme F420-0 gamma-glutamyl ligase YP_643740.1 998931 D 266117 CDS YP_643741.1 108803804 4115925 999912..1000667 1 NC_008148.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sth:STH1142 phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase 1000667 4115925 Rxyl_0962 Rubrobacter xylanophilus DSM 9941 phosphoadenylylsulfate reductase YP_643741.1 999912 D 266117 CDS YP_643742.1 108803805 4115926 1000654..1002309 1 NC_008148.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region; KEGG: nph:NP4004A probable ferredoxin--nitrite reductase 3; ferredoxin--nitrite reductase 1002309 4115926 Rxyl_0963 Rubrobacter xylanophilus DSM 9941 ferredoxin--nitrite reductase YP_643742.1 1000654 D 266117 CDS YP_643743.1 108803806 4115927 1002312..1003514 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding coenzyme F420 hydrogenase/dehydrogenase beta subunit-like; KEGG: nph:NP4006A homolog to coenzyme F420 hydrogenase; coenzyme F420 hydrogenase/dehydrogenase subunit beta-like protein 1003514 4115927 Rxyl_0964 Rubrobacter xylanophilus DSM 9941 coenzyme F420 hydrogenase/dehydrogenase subunit beta-like protein YP_643743.1 1002312 D 266117 CDS YP_643744.1 108803807 4115928 1003516..1003851 1 NC_008148.1 hypothetical protein 1003851 4115928 Rxyl_0965 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643744.1 1003516 D 266117 CDS YP_643745.1 108803808 4115929 1003848..1005029 1 NC_008148.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 1005029 sat 4115929 sat Rubrobacter xylanophilus DSM 9941 sulfate adenylyltransferase YP_643745.1 1003848 D 266117 CDS YP_643746.1 108803809 4115930 1005120..1005689 1 NC_008148.1 PFAM: adenylylsulfate kinase; KEGG: syn:slr0676 adenylylsulfate 3-phosphotransferase; adenylylsulfate kinase 1005689 4115930 Rxyl_0967 Rubrobacter xylanophilus DSM 9941 adenylylsulfate kinase YP_643746.1 1005120 D 266117 CDS YP_643747.1 108803810 4115931 1005686..1006495 1 NC_008148.1 PFAM: protein of unknown function DUF81; KEGG: btk:BT9727_2185 conserved hypothetical protein, possible membrane protein; hypothetical protein 1006495 4115931 Rxyl_0968 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643747.1 1005686 D 266117 CDS YP_643748.1 108803811 4115932 1006589..1007008 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sak:SAK_1508 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 1007008 4115932 Rxyl_0969 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_643748.1 1006589 D 266117 CDS YP_643749.1 108803812 4115933 complement(1007016..1007702) 1 NC_008148.1 TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: regulatory protein, MerR; excisionase/Xis, DNA-binding protein 1007702 4115933 Rxyl_0970 Rubrobacter xylanophilus DSM 9941 excisionase/Xis, DNA-binding protein YP_643749.1 1007016 R 266117 CDS YP_643750.1 108803813 4115934 1007988..1008602 1 NC_008148.1 TIGRFAM: rare lipoprotein A; PFAM: Peptidoglycan-binding LysM Rare lipoprotein A; KEGG: tel:tlr0333 hypothetical protein; rare lipoprotein A 1008602 4115934 Rxyl_0971 Rubrobacter xylanophilus DSM 9941 rare lipoprotein A YP_643750.1 1007988 D 266117 CDS YP_643751.1 108803814 4115935 1008757..1009785 1 NC_008148.1 PFAM: luciferase-like; KEGG: hma:rrnB0214 bacterial luciferase family monooxygenase; luciferase-like protein 1009785 4115935 Rxyl_0972 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_643751.1 1008757 D 266117 CDS YP_643752.1 108803815 4117205 1009800..1010846 1 NC_008148.1 PFAM: nitroreductase pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: tfu:Tfu_2518 hypothetical protein; nitroreductase 1010846 4117205 Rxyl_0973 Rubrobacter xylanophilus DSM 9941 nitroreductase YP_643752.1 1009800 D 266117 CDS YP_643753.1 108803816 4117206 complement(1010848..1011294) 1 NC_008148.1 KEGG: tcr:509269.4 Tb-291 membrane-associated protein-like Pfam: Plasmodium_HRP PROSITE: ALA_RICH ARG_RICH GLU_RICH; hypothetical protein 1011294 4117206 Rxyl_0974 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643753.1 1010848 R 266117 CDS YP_643754.1 108803817 4117207 complement(1011307..1013685) 1 NC_008148.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis; FO synthase 1013685 fbiC 4117207 fbiC Rubrobacter xylanophilus DSM 9941 FO synthase YP_643754.1 1011307 R 266117 CDS YP_643755.1 108803818 4117208 1013826..1014707 1 NC_008148.1 PFAM: Rhodanese-like; KEGG: ttj:TTHA1028 thiosulfate sulfurtransferase; thiosulfate sulfurtransferase 1014707 4117208 Rxyl_0976 Rubrobacter xylanophilus DSM 9941 thiosulfate sulfurtransferase YP_643755.1 1013826 D 266117 CDS YP_643756.1 108803819 4117209 1014714..1015118 1 NC_008148.1 PFAM: nitrogen-fixing NifU-like-like; KEGG: nph:NP0940A homolog to nitrogen fixation protein NifU; nitrogen-fixing NifU-like protein 1015118 4117209 Rxyl_0977 Rubrobacter xylanophilus DSM 9941 nitrogen-fixing NifU-like protein YP_643756.1 1014714 D 266117 CDS YP_643757.1 108803820 4117210 1017423..1018940 1 NC_008148.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: fra:Francci3_3168 argininosuccinate lyase; argininosuccinate lyase 1018940 4117210 Rxyl_0979 Rubrobacter xylanophilus DSM 9941 argininosuccinate lyase YP_643757.1 1017423 D 266117 CDS YP_643758.1 108803821 4117211 1018948..1019763 1 NC_008148.1 PFAM: metallophosphoesterase; KEGG: mac:MA4564 3,5-cyclic-nucleotide phosphodiesterase; metallophosphoesterase 1019763 4117211 Rxyl_0980 Rubrobacter xylanophilus DSM 9941 metallophosphoesterase YP_643758.1 1018948 D 266117 CDS YP_643759.1 108803822 4117212 complement(1019760..1020119) 1 NC_008148.1 hypothetical protein 1020119 4117212 Rxyl_0981 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643759.1 1019760 R 266117 CDS YP_643760.1 108803823 4117213 complement(1020125..1021084) 1 NC_008148.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cyb:CYB_0579 quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein; glycine betaine ABC transporter substrate-binding protein 1021084 4117213 Rxyl_0982 Rubrobacter xylanophilus DSM 9941 glycine betaine ABC transporter substrate-binding protein YP_643760.1 1020125 R 266117 CDS YP_643761.1 108803824 4117214 complement(1021115..1021768) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2571 quaternary amine ABC transporter (QAT) family, permease protein; binding-protein-dependent transport system inner membrane protein 1021768 4117214 Rxyl_0983 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643761.1 1021115 R 266117 CDS YP_643762.1 108803825 4117215 complement(1021768..1022478) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2960 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1022478 4117215 Rxyl_0984 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_643762.1 1021768 R 266117 CDS YP_643763.1 108803826 4117216 complement(1022482..1023447) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO2931 putative ABC transporter ATP-binding protein; ABC transporter-like protein 1023447 4117216 Rxyl_0985 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643763.1 1022482 R 266117 CDS YP_643764.1 108803827 4117217 complement(1023593..1023868) 1 NC_008148.1 hypothetical protein 1023868 4117217 Rxyl_0986 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643764.1 1023593 R 266117 CDS YP_643765.1 108803828 4117218 complement(1023868..1024197) 1 NC_008148.1 hypothetical protein 1024197 4117218 Rxyl_0987 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643765.1 1023868 R 266117 CDS YP_643766.1 108803829 4117219 complement(1024231..1024620) 1 NC_008148.1 hypothetical protein 1024620 4117219 Rxyl_0988 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643766.1 1024231 R 266117 CDS YP_643767.1 108803830 4117220 1025020..1025781 1 NC_008148.1 SMART: ParB-like nuclease; KEGG: sao:SAOUHSC_00083 hypothetical protein; ParB-like nuclease 1025781 4117220 Rxyl_0989 Rubrobacter xylanophilus DSM 9941 ParB-like nuclease YP_643767.1 1025020 D 266117 CDS YP_643768.1 108803831 4117221 1025886..1027175 1 NC_008148.1 PFAM: adenylosuccinate synthetase; KEGG: tfu:Tfu_3012 adenylosuccinate synthetase; adenylosuccinate synthetase 1027175 4117221 Rxyl_0990 Rubrobacter xylanophilus DSM 9941 adenylosuccinate synthetase YP_643768.1 1025886 D 266117 CDS YP_643769.1 108803832 4117222 1027179..1028456 1 NC_008148.1 KEGG: mta:Moth_2043 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase protein of unknown function DUF201; phosphoribosylamine--glycine ligase 1028456 4117222 Rxyl_0991 Rubrobacter xylanophilus DSM 9941 phosphoribosylamine--glycine ligase YP_643769.1 1027179 D 266117 CDS YP_643770.1 108803833 4117223 1028479..1029786 1 NC_008148.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: chy:CHY_1070 adenylosuccinate lyase; adenylosuccinate lyase 1029786 4117223 Rxyl_0992 Rubrobacter xylanophilus DSM 9941 adenylosuccinate lyase YP_643770.1 1028479 D 266117 CDS YP_643771.1 108803834 4116211 1029789..1030502 1 NC_008148.1 KEGG: dra:DR0226 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1030502 4116211 Rxyl_0993 Rubrobacter xylanophilus DSM 9941 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_643771.1 1029789 D 266117 CDS YP_643772.1 108803835 4116212 1030499..1030723 1 NC_008148.1 PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: zmo:ZMO1531 phosphoribosylformylglycinamidine synthase small subunit; phosphoribosylformylglycinamidine synthetase PurS 1030723 4116212 Rxyl_0994 Rubrobacter xylanophilus DSM 9941 phosphoribosylformylglycinamidine synthetase PurS YP_643772.1 1030499 D 266117 CDS YP_643773.1 108803836 4116213 1030720..1031382 1 NC_008148.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: SNO glutamine amidotransferase CobB/CobQ-like glutamine amidotransferase; KEGG: tfu:Tfu_0156 phosphoribosylformylglycinamidine synthase I; phosphoribosylformylglycinamidine synthase subunit I 1031382 4116213 Rxyl_0995 Rubrobacter xylanophilus DSM 9941 phosphoribosylformylglycinamidine synthase subunit I YP_643773.1 1030720 D 266117 CDS YP_643774.1 108803837 4116214 1031379..1033562 1 NC_008148.1 KEGG: mta:Moth_2048 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein AIR synthase related protein-like; phosphoribosylformylglycinamidine synthase subunit II 1033562 4116214 Rxyl_0996 Rubrobacter xylanophilus DSM 9941 phosphoribosylformylglycinamidine synthase subunit II YP_643774.1 1031379 D 266117 CDS YP_643775.1 108803838 4116215 1033564..1035012 1 NC_008148.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II phosphoribosyltransferase; KEGG: syf:Synpcc7942_0004 amidophosphoribosyltransferase; amidophosphoribosyltransferase 1035012 4116215 Rxyl_0997 Rubrobacter xylanophilus DSM 9941 amidophosphoribosyltransferase YP_643775.1 1033564 D 266117 CDS YP_643776.1 108803839 4116216 1035016..1036041 1 NC_008148.1 KEGG: gvi:gll0720 phosphoribosyl formylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein AIR synthase related protein-like; phosphoribosylformylglycinamidine cyclo-ligase 1036041 4116216 Rxyl_0998 Rubrobacter xylanophilus DSM 9941 phosphoribosylformylglycinamidine cyclo-ligase YP_643776.1 1035016 D 266117 CDS YP_643777.1 108803840 4116217 1036031..1036615 1 NC_008148.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase-like; KEGG: sth:STH2852 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 1036615 4116217 Rxyl_0999 Rubrobacter xylanophilus DSM 9941 phosphoribosylglycinamide formyltransferase YP_643777.1 1036031 D 266117 CDS YP_643778.1 108803841 4116218 1036612..1038135 1 NC_008148.1 KEGG: tfu:Tfu_2572 AICARFT/IMPCHase bienzyme; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme MGS-like; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1038135 4116218 Rxyl_1000 Rubrobacter xylanophilus DSM 9941 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_643778.1 1036612 D 266117 CDS YP_643779.1 108803842 4116219 1038146..1038595 1 NC_008148.1 KEGG: ade:Adeh_3903 hypothetical protein; hypothetical protein 1038595 4116219 Rxyl_1001 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643779.1 1038146 D 266117 CDS YP_643780.1 108803843 4116220 complement(1038943..1039596) 1 NC_008148.1 hypothetical protein 1039596 4116220 Rxyl_1002 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643780.1 1038943 R 266117 CDS YP_643781.1 108803844 4116221 1040186..1040518 1 NC_008148.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tte:TTE1233 Thiol-disulfide isomerase and thioredoxins; thioredoxin 1040518 4116221 Rxyl_1003 Rubrobacter xylanophilus DSM 9941 thioredoxin YP_643781.1 1040186 D 266117 CDS YP_643782.1 108803845 4116222 complement(1040661..1041029) 1 NC_008148.1 hypothetical protein 1041029 4116222 Rxyl_1004 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643782.1 1040661 R 266117 CDS YP_643783.1 108803846 4116223 complement(1041118..1043139) 1 NC_008148.1 KEGG: tfu:Tfu_1426 hypothetical protein; hypothetical protein 1043139 4116223 Rxyl_1005 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643783.1 1041118 R 266117 CDS YP_643784.1 108803847 4116224 1043603..1043911 1 NC_008148.1 hypothetical protein 1043911 4116224 Rxyl_1006 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643784.1 1043603 D 266117 CDS YP_643785.1 108803848 4116225 1043912..1044280 1 NC_008148.1 hypothetical protein 1044280 4116225 Rxyl_1007 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643785.1 1043912 D 266117 CDS YP_643786.1 108803849 4116226 complement(1044367..1045236) 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4; KEGG: bha:BH1376 RNA polymerase major sigma factor; RNA polymerase sigma-28 subunit 1045236 4116226 Rxyl_1008 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_643786.1 1044367 R 266117 CDS YP_643787.1 108803850 4116227 complement(1045434..1045946) 1 NC_008148.1 PFAM: helix-turn-helix motif; XRE family transcriptional regulator 1045946 4116227 Rxyl_1009 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_643787.1 1045434 R 266117 CDS YP_643788.1 108803851 4116228 1046089..1046550 1 NC_008148.1 PFAM: heat shock protein Hsp20; KEGG: dps:DP1866 similar to low molecular weight heat shock protein (HSP17); heat shock protein Hsp20 1046550 4116228 Rxyl_1010 Rubrobacter xylanophilus DSM 9941 heat shock protein Hsp20 YP_643788.1 1046089 D 266117 CDS YP_643789.1 108803852 4116229 1046664..1047560 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bsu:BG14088 similar to hypothetical proteins; hypothetical protein 1047560 4116229 Rxyl_1011 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643789.1 1046664 D 266117 CDS YP_643790.1 108803853 4116230 complement(1047557..1047928) 1 NC_008148.1 hypothetical protein 1047928 4116230 Rxyl_1012 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643790.1 1047557 R 266117 CDS YP_643791.1 108803854 4116699 1048013..1048663 1 NC_008148.1 PFAM: CBS amino acid-binding ACT; KEGG: ttj:TTHA0474 acetoin utilization protein AcuB (acetoin dehydrogenase); hypothetical protein 1048663 4116699 Rxyl_1013 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643791.1 1048013 D 266117 CDS YP_643792.1 108803855 4116700 1048660..1049823 1 NC_008148.1 PFAM: histone deacetylase superfamily; KEGG: gka:GK2809 acetoin utilization protein; histone deacetylase superfamily protein 1049823 4116700 Rxyl_1014 Rubrobacter xylanophilus DSM 9941 histone deacetylase superfamily protein YP_643792.1 1048660 D 266117 CDS YP_643793.1 108803856 4116701 1049859..1050182 1 NC_008148.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: ava:Ava_1275 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 1050182 4116701 Rxyl_1015 Rubrobacter xylanophilus DSM 9941 ATP-dependent Clp protease adaptor protein ClpS YP_643793.1 1049859 D 266117 CDS YP_643794.1 108803857 4116702 1050247..1051428 1 NC_008148.1 PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: sma:SAV6301 putative antibiotic transport protein; major facilitator transporter 1051428 4116702 Rxyl_1016 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643794.1 1050247 D 266117 CDS YP_643795.1 108803858 4116703 1051450..1052799 1 NC_008148.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: sma:SAV3036 hypothetical protein; metal dependent phosphohydrolase 1052799 4116703 Rxyl_1017 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_643795.1 1051450 D 266117 CDS YP_643796.1 108803859 4116704 1052874..1054832 1 NC_008148.1 KEGG: deh:cbdb_A1335 GGDEF domain; TIGRFAM: uncharacterized domain HDIG; PFAM: GGDEF metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1054832 4116704 Rxyl_1018 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_643796.1 1052874 D 266117 CDS YP_643797.1 108803860 4116705 complement(1054837..1055823) 1 NC_008148.1 KEGG: ttj:TTHA0011 molybdenum cofactor biosynthesis protein A (MoaA); TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM molybdenum cofactor synthesis-like; SMART: Elongator protein 3/MiaB/NifB; GTP cyclohydrolase subunit MoaA 1055823 4116705 Rxyl_1019 Rubrobacter xylanophilus DSM 9941 GTP cyclohydrolase subunit MoaA YP_643797.1 1054837 R 266117 CDS YP_643798.1 108803861 4116706 complement(1055891..1057159) 1 NC_008148.1 PFAM: Arsenical pump membrane protein Citrate transporter; KEGG: chy:CHY_2019 arsenic transporter family protein; citrate transporter 1057159 4116706 Rxyl_1020 Rubrobacter xylanophilus DSM 9941 citrate transporter YP_643798.1 1055891 R 266117 CDS YP_643799.1 108803862 4116707 complement(1057199..1057678) 1 NC_008148.1 PFAM: CBS; KEGG: tel:tll1802 CBS domain protein; hypothetical protein 1057678 4116707 Rxyl_1021 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643799.1 1057199 R 266117 CDS YP_643800.1 108803863 4116708 1057790..1059055 1 NC_008148.1 PFAM: Arsenical pump membrane protein sodium/sulphate symporter Citrate transporter; KEGG: chy:CHY_2019 arsenic transporter family protein; citrate transporter 1059055 4116708 Rxyl_1022 Rubrobacter xylanophilus DSM 9941 citrate transporter YP_643800.1 1057790 D 266117 CDS YP_643801.1 108803864 4116709 complement(1059052..1060605) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: dps:DP0309 similar to hexosyltransferase; group 1 glycosyl transferase 1060605 4116709 Rxyl_1023 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_643801.1 1059052 R 266117 CDS YP_643802.1 108803865 4116710 1060782..1061639 1 NC_008148.1 KEGG: lma:LmjF34.0690 hypothetical protein, conserved; hypothetical protein 1061639 4116710 Rxyl_1024 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643802.1 1060782 D 266117 CDS YP_643803.1 108803866 4116711 complement(1061636..1061818) 1 NC_008148.1 PFAM: sec-independent translocation protein mttA/Hcf106; sec-independent translocation protein mttA/Hcf106 1061818 4116711 Rxyl_1025 Rubrobacter xylanophilus DSM 9941 sec-independent translocation protein mttA/Hcf106 YP_643803.1 1061636 R 266117 CDS YP_643804.1 108803867 4116712 complement(1061815..1062255) 1 NC_008148.1 KEGG: eba:ebA2139 hypothetical protein; hypothetical protein 1062255 4116712 Rxyl_1026 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643804.1 1061815 R 266117 CDS YP_643805.1 108803868 4116713 complement(1062252..1062620) 1 NC_008148.1 PFAM: protein of unknown function DUF1025; KEGG: sma:SAV4125 hypothetical protein; hypothetical protein 1062620 4116713 Rxyl_1027 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643805.1 1062252 R 266117 CDS YP_643806.1 108803869 4116714 complement(1062650..1063342) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: chy:CHY_0189 transcriptional regulator, GntR family; GntR family transcriptional regulator 1063342 4116714 Rxyl_1028 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_643806.1 1062650 R 266117 CDS YP_643807.1 108803870 4116715 1063456..1064343 1 NC_008148.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: nar:Saro_2598 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 1064343 4116715 Rxyl_1029 Rubrobacter xylanophilus DSM 9941 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_643807.1 1063456 D 266117 CDS YP_643808.1 108803871 4116716 1064382..1065056 1 NC_008148.1 PFAM: glutamine amidotransferase class-I; KEGG: pae:PA1729 hypothetical protein; glutamine amidotransferase 1065056 4116716 Rxyl_1030 Rubrobacter xylanophilus DSM 9941 glutamine amidotransferase YP_643808.1 1064382 D 266117 CDS YP_643809.1 108803872 4116717 1065053..1066387 1 NC_008148.1 PFAM: glutamine synthetase, catalytic region; KEGG: mta:Moth_1764 glutamine synthetase, type I; L-glutamine synthetase 1066387 4116717 Rxyl_1031 Rubrobacter xylanophilus DSM 9941 L-glutamine synthetase YP_643809.1 1065053 D 266117 CDS YP_643810.1 108803873 4116679 1066401..1067645 1 NC_008148.1 PFAM: cytochrome P450; KEGG: mpa:MAP3818 hypothetical protein; cytochrome P450 1067645 4116679 Rxyl_1032 Rubrobacter xylanophilus DSM 9941 cytochrome P450 YP_643810.1 1066401 D 266117 CDS YP_643811.1 108803874 4116680 1067642..1068565 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpa:RPA3761 putative catechol 2,3-dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1068565 4116680 Rxyl_1033 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_643811.1 1067642 D 266117 CDS YP_643812.1 108803875 4116681 1068562..1069362 1 NC_008148.1 PFAM: Acetoacetate decarboxylase; KEGG: gsu:GSU2400 hypothetical protein; acetoacetate decarboxylase 1069362 4116681 Rxyl_1034 Rubrobacter xylanophilus DSM 9941 acetoacetate decarboxylase YP_643812.1 1068562 D 266117 CDS YP_643813.1 108803876 4116682 1069359..1070825 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: nar:Saro_2610 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 1070825 4116682 Rxyl_1035 Rubrobacter xylanophilus DSM 9941 betaine-aldehyde dehydrogenase YP_643813.1 1069359 D 266117 CDS YP_643814.1 108803877 4116683 1070822..1072102 1 NC_008148.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20 peptidase dimerisation; KEGG: mlo:mlr7167 acetylornitine deacetylase; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 1072102 4116683 Rxyl_1036 Rubrobacter xylanophilus DSM 9941 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase YP_643814.1 1070822 D 266117 CDS YP_643815.1 108803878 4116684 1072102..1073631 1 NC_008148.1 PFAM: amino acid permease-associated region; KEGG: sco:SCO1683 amino acid permease; amino acid permease-associated protein 1073631 4116684 Rxyl_1037 Rubrobacter xylanophilus DSM 9941 amino acid permease-associated protein YP_643815.1 1072102 D 266117 CDS YP_643816.1 108803879 4116685 1073628..1075079 1 NC_008148.1 PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase Pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase, putative; aromatic-L-amino-acid decarboxylase 1075079 4116685 Rxyl_1038 Rubrobacter xylanophilus DSM 9941 aromatic-L-amino-acid decarboxylase YP_643816.1 1073628 D 266117 CDS YP_643817.1 108803880 4116686 1075132..1075380 1 NC_008148.1 hypothetical protein 1075380 4116686 Rxyl_1039 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643817.1 1075132 D 266117 CDS YP_643818.1 108803881 4116687 1075412..1076701 1 NC_008148.1 PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: gsu:GSU2067 ATPase, AAA family; recombination factor protein RarA 1076701 4116687 Rxyl_1040 Rubrobacter xylanophilus DSM 9941 recombination factor protein RarA YP_643818.1 1075412 D 266117 CDS YP_643819.1 108803882 4116688 complement(1076698..1077300) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_2105 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1077300 4116688 Rxyl_1041 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_643819.1 1076698 R 266117 CDS YP_643820.1 108803883 4116689 complement(1077281..1079140) 1 NC_008148.1 hypothetical protein 1079140 4116689 Rxyl_1042 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643820.1 1077281 R 266117 CDS YP_643821.1 108803884 4116690 complement(1079137..1080294) 1 NC_008148.1 KEGG: sma:SAV6066 putative membrane protein; hypothetical protein 1080294 4116690 Rxyl_1043 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643821.1 1079137 R 266117 CDS YP_643822.1 108803885 4116691 complement(1080381..1081580) 1 NC_008148.1 PFAM: TrkA-C PhoU; KEGG: mac:MA1435 potassium channel protein; hypothetical protein 1081580 4116691 Rxyl_1044 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643822.1 1080381 R 266117 CDS YP_643823.1 108803886 4116692 complement(1081591..1082865) 1 NC_008148.1 PFAM: MgtE integral membrane region; KEGG: mth:MTH1401 mgtE-like transporter; MgtE integral membrane protein 1082865 4116692 Rxyl_1045 Rubrobacter xylanophilus DSM 9941 MgtE integral membrane protein YP_643823.1 1081591 R 266117 CDS YP_643824.1 108803887 4116693 1082980..1083333 1 NC_008148.1 hypothetical protein 1083333 4116693 Rxyl_1046 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643824.1 1082980 D 266117 CDS YP_643825.1 108803888 4116694 1083344..1084597 1 NC_008148.1 PFAM: Arsenical pump membrane protein Citrate transporter; KEGG: sma:SAV7477 putative membrane efflux protein; arsenical pump membrane protein 1084597 4116694 Rxyl_1047 Rubrobacter xylanophilus DSM 9941 arsenical pump membrane protein YP_643825.1 1083344 D 266117 CDS YP_643826.1 108803889 4116695 complement(1084594..1085130) 1 NC_008148.1 PFAM: DoxX; KEGG: sma:SAV5909 hypothetical protein; DoxX protein 1085130 4116695 Rxyl_1048 Rubrobacter xylanophilus DSM 9941 DoxX protein YP_643826.1 1084594 R 266117 CDS YP_643827.1 108803890 4116696 complement(1085191..1085883) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: nfa:nfa44760 putative transcriptional regulator; TetR family transcriptional regulator 1085883 4116696 Rxyl_1049 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_643827.1 1085191 R 266117 CDS YP_643828.1 108803891 4116697 1085983..1086591 1 NC_008148.1 PFAM: NADPH-dependent FMN reductase flavodoxin/nitric oxide synthase; KEGG: oih:OB3102 trp repressor binding protein; flavodoxin/nitric oxide synthase 1086591 4116697 Rxyl_1050 Rubrobacter xylanophilus DSM 9941 flavodoxin/nitric oxide synthase YP_643828.1 1085983 D 266117 CDS YP_643829.1 108803892 4116698 1086625..1087647 1 NC_008148.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: nar:Saro_2455 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1087647 4116698 Rxyl_1051 Rubrobacter xylanophilus DSM 9941 iron-containing alcohol dehydrogenase YP_643829.1 1086625 D 266117 CDS YP_643830.1 108803893 4116932 1087657..1088952 1 NC_008148.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: tth:TTC1744 lactate 2-monooxygenase; lactate 2-monooxygenase 1088952 4116932 Rxyl_1052 Rubrobacter xylanophilus DSM 9941 lactate 2-monooxygenase YP_643830.1 1087657 D 266117 CDS YP_643831.1 108803894 4116933 complement(1088924..1089517) 1 NC_008148.1 PFAM: protein of unknown function DUF147; KEGG: mja:MJ1002 hypothetical protein; hypothetical protein 1089517 4116933 Rxyl_1053 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643831.1 1088924 R 266117 CDS YP_643832.1 108803895 4116934 complement(1089591..1090244) 1 NC_008148.1 PFAM: phospholipase/Carboxylesterase; KEGG: bja:bll3246 hypothetical protein; phospholipase/carboxylesterase 1090244 4116934 Rxyl_1054 Rubrobacter xylanophilus DSM 9941 phospholipase/carboxylesterase YP_643832.1 1089591 R 266117 CDS YP_643833.1 108803896 4116935 complement(1090241..1091164) 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll3247 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1091164 4116935 Rxyl_1055 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_643833.1 1090241 R 266117 CDS YP_643834.1 108803897 4116936 complement(1091191..1091598) 1 NC_008148.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: tfu:Tfu_2318 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 1091598 4116936 Rxyl_1056 Rubrobacter xylanophilus DSM 9941 pyridoxamine 5'-phosphate oxidase-like protein YP_643834.1 1091191 R 266117 CDS YP_643835.1 108803898 4116937 complement(1091652..1092632) 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3759 similar to ABC transporter (binding protein); glyoxalase/bleomycin resistance protein/dioxygenase 1092632 4116937 Rxyl_1057 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_643835.1 1091652 R 266117 CDS YP_643836.1 108803899 4116938 complement(1092686..1094101) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: btk:BT9727_0958 major facilitator family transporter; possible metal-tetracycline/H+ antiporter; major facilitator transporter 1094101 4116938 Rxyl_1058 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643836.1 1092686 R 266117 CDS YP_643837.1 108803900 4116939 complement(1094098..1094559) 1 NC_008148.1 PFAM: regulatory protein, MarR iron dependent repressor transcriptional regulator TrmB; KEGG: mlo:mlr5157 hypothetical protein; transcriptional regulator, TrmB 1094559 4116939 Rxyl_1059 Rubrobacter xylanophilus DSM 9941 transcriptional regulator, TrmB YP_643837.1 1094098 R 266117 CDS YP_643838.1 108803901 4116940 complement(1094633..1095769) 1 NC_008148.1 TIGRFAM: GGDEF domain; PFAM: GGDEF; KEGG: sth:STH566 putative sensory box/GGDEF domain protein; diguanylate cyclase 1095769 4116940 Rxyl_1060 Rubrobacter xylanophilus DSM 9941 diguanylate cyclase YP_643838.1 1094633 R 266117 CDS YP_643839.1 108803902 4116941 complement(1095856..1096731) 1 NC_008148.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein-like; KEGG: mta:Moth_1625 selenide, water dikinase; selenophosphate synthase 1096731 4116941 Rxyl_1061 Rubrobacter xylanophilus DSM 9941 selenophosphate synthase YP_643839.1 1095856 R 266117 CDS YP_643840.1 108803903 4116942 1096946..1097557 1 NC_008148.1 KEGG: tma:TM1431 glycerol uptake operon antiterminator; glycerol uptake operon antiterminator 1097557 4116942 Rxyl_1062 Rubrobacter xylanophilus DSM 9941 glycerol uptake operon antiterminator YP_643840.1 1096946 D 266117 CDS YP_643841.1 108803904 4116943 1097762..1099273 1 NC_008148.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: noc:Noc_2698 glycerol kinase; glycerol kinase 1099273 4116943 Rxyl_1063 Rubrobacter xylanophilus DSM 9941 glycerol kinase YP_643841.1 1097762 D 266117 CDS YP_643842.1 108803905 4116944 1099270..1100268 1 NC_008148.1 KEGG: tte:TTE1997 dihydroxyacetone kinase; TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; PFAM: Dak kinase; dihydroxyacetone kinase DhaK subunit 1 1100268 4116944 Rxyl_1064 Rubrobacter xylanophilus DSM 9941 dihydroxyacetone kinase DhaK subunit 1 YP_643842.1 1099270 D 266117 CDS YP_643843.1 108803906 4116945 1100294..1101037 1 NC_008148.1 TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: chy:CHY_1840 glycerol uptake facilitator protein; MIP family channel protein 1101037 4116945 Rxyl_1065 Rubrobacter xylanophilus DSM 9941 MIP family channel protein YP_643843.1 1100294 D 266117 CDS YP_643844.1 108803907 4116946 1101109..1101327 1 NC_008148.1 hypothetical protein 1101327 4116946 Rxyl_1066 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643844.1 1101109 D 266117 CDS YP_643845.1 108803908 4116947 1101349..1101975 1 NC_008148.1 TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase; KEGG: lxx:Lxx09880 dihydroxyacetone kinase; dihydroxyacetone kinase subunit L 1101975 4116947 Rxyl_1067 Rubrobacter xylanophilus DSM 9941 dihydroxyacetone kinase subunit L YP_643845.1 1101349 D 266117 CDS YP_643846.1 108803909 4116948 1101977..1102372 1 NC_008148.1 TIGRFAM: Dihydroxyacetone kinase, subunit phosphotransferase; PFAM: PTS system fructose subfamily IIA component; KEGG: tte:TTE1995 hypothetical protein; dihydroxyacetone kinase subunit phosphotransferase 1102372 4116948 Rxyl_1068 Rubrobacter xylanophilus DSM 9941 dihydroxyacetone kinase subunit phosphotransferase YP_643846.1 1101977 D 266117 CDS YP_643847.1 108803910 4116949 1102485..1104155 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1085 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 1104155 4116949 Rxyl_1069 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_643847.1 1102485 D 266117 CDS YP_643848.1 108803911 4116950 1104266..1104784 1 NC_008148.1 PFAM: Rubrerythrin Ferritin and Dps; KEGG: mmp:MMP1172 hypothetical protein; rubrerythrin 1104784 4116950 Rxyl_1070 Rubrobacter xylanophilus DSM 9941 rubrerythrin YP_643848.1 1104266 D 266117 CDS YP_643849.1 108803912 4116659 1104890..1105804 1 NC_008148.1 KEGG: fra:Francci3_0059 conserved hypothetical protein; hypothetical protein 1105804 4116659 Rxyl_1071 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643849.1 1104890 D 266117 CDS YP_643850.1 108803913 4116660 1105903..1107231 1 NC_008148.1 PFAM: CBS protein of unknown function DUF21 transporter-associated region; KEGG: gka:GK0564 hemolysin; hypothetical protein 1107231 4116660 Rxyl_1072 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643850.1 1105903 D 266117 CDS YP_643851.1 108803914 4116661 1107265..1108092 1 NC_008148.1 PFAM: TatD-related deoxyribonuclease amidohydrolase 2; KEGG: mka:MK0426 hypothetical protein; amidohydrolase 2 1108092 4116661 Rxyl_1073 Rubrobacter xylanophilus DSM 9941 amidohydrolase 2 YP_643851.1 1107265 D 266117 CDS YP_643852.1 108803915 4116662 1108080..1108415 1 NC_008148.1 hypothetical protein 1108415 4116662 Rxyl_1074 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643852.1 1108080 D 266117 CDS YP_643853.1 108803916 4116663 1108412..1109407 1 NC_008148.1 PFAM: L-asparaginase II; KEGG: mlo:mlr7616 hypothetical protein; L-asparaginase II 1109407 4116663 Rxyl_1075 Rubrobacter xylanophilus DSM 9941 L-asparaginase II YP_643853.1 1108412 D 266117 CDS YP_643854.1 108803917 4116664 1109419..1109994 1 NC_008148.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1109994 aat 4116664 aat Rubrobacter xylanophilus DSM 9941 leucyl/phenylalanyl-tRNA--protein transferase YP_643854.1 1109419 D 266117 CDS YP_643855.1 108803918 4116665 1110176..1111075 1 NC_008148.1 PFAM: protein of unknown function DUF75; KEGG: sco:SCO1662 hypothetical protein; hypothetical protein 1111075 4116665 Rxyl_1077 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643855.1 1110176 D 266117 CDS YP_643856.1 108803919 4116666 complement(1111095..1111634) 1 NC_008148.1 PFAM: protein of unknown function DUF456; KEGG: pca:Pcar_2062 hypothetical protein; hypothetical protein 1111634 4116666 Rxyl_1078 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643856.1 1111095 R 266117 CDS YP_643857.1 108803920 4116667 complement(1111642..1112481) 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: thiamine biosynthesis protein ExsB PP-loop; KEGG: chy:CHY_1281 conserved hypothetical protein TIGR00268; hypothetical protein 1112481 4116667 Rxyl_1079 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643857.1 1111642 R 266117 CDS YP_643858.1 108803921 4116668 complement(1112478..1113062) 1 NC_008148.1 PFAM: Redoxin; KEGG: pfl:PFL_4258 BcpB; redoxin 1113062 4116668 Rxyl_1080 Rubrobacter xylanophilus DSM 9941 redoxin YP_643858.1 1112478 R 266117 CDS YP_643859.1 108803922 4116669 complement(1113064..1114305) 1 NC_008148.1 PFAM: beta-ketoacyl synthase; KEGG: cya:CYA_2873 3-oxoacyl-[acyl-carrier-protein] synthase II; 3-oxoacyl-ACP synthase 1114305 4116669 Rxyl_1081 Rubrobacter xylanophilus DSM 9941 3-oxoacyl-ACP synthase YP_643859.1 1113064 R 266117 CDS YP_643860.1 108803923 4116670 1114448..1114762 1 NC_008148.1 hypothetical protein 1114762 4116670 Rxyl_1082 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643860.1 1114448 D 266117 CDS YP_643861.1 108803924 4116671 1114775..1115584 1 NC_008148.1 PFAM: nitroreductase; KEGG: dra:DR1271 hypothetical protein; cob(II)yrinic acid a,c-diamide reductase 1115584 4116671 Rxyl_1083 Rubrobacter xylanophilus DSM 9941 cob(II)yrinic acid a,c-diamide reductase YP_643861.1 1114775 D 266117 CDS YP_643862.1 108803925 4116672 1115581..1116624 1 NC_008148.1 PFAM: chalcone and stilbene synthases-like Chalcone and stilbene synthases-like FAE1/Type III polyketide synthase-like protein 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: dra:DR2091 chalcone synthase, putative; chalcone and stilbene synthases-like protein 1116624 4116672 Rxyl_1084 Rubrobacter xylanophilus DSM 9941 chalcone and stilbene synthases-like protein YP_643862.1 1115581 D 266117 CDS YP_643863.1 108803926 4116673 1116618..1117136 1 NC_008148.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: sco:SCO7670 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1117136 4116673 Rxyl_1085 Rubrobacter xylanophilus DSM 9941 isoprenylcysteine carboxyl methyltransferase YP_643863.1 1116618 D 266117 CDS YP_643864.1 108803927 4116674 1117182..1118456 1 NC_008148.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1118456 4116674 Rxyl_1086 Rubrobacter xylanophilus DSM 9941 seryl-tRNA synthetase YP_643864.1 1117182 D 266117 CDS YP_643865.1 108803928 4116675 1118527..1119957 1 NC_008148.1 KEGG: plt:Plut_1492 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding; prolyl-tRNA synthetase 1119957 4116675 Rxyl_1087 Rubrobacter xylanophilus DSM 9941 prolyl-tRNA synthetase YP_643865.1 1118527 D 266117 CDS YP_643866.1 108803929 4116676 1120079..1121011 1 NC_008148.1 KEGG: sco:SCO0445 secreted protein; hypothetical protein 1121011 4116676 Rxyl_1088 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643866.1 1120079 D 266117 CDS YP_643867.1 108803930 4116677 1121277..1122419 1 NC_008148.1 KEGG: sth:STH1685 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 1122419 4116677 Rxyl_1089 Rubrobacter xylanophilus DSM 9941 homoserine O-acetyltransferase YP_643867.1 1121277 D 266117 CDS YP_643868.1 108803931 4116678 1122518..1123795 1 NC_008148.1 KEGG: mka:MK0109 aspartokinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; aspartate kinase 1123795 4116678 Rxyl_1090 Rubrobacter xylanophilus DSM 9941 aspartate kinase YP_643868.1 1122518 D 266117 CDS YP_643869.1 108803932 4116112 1123792..1124874 1 NC_008148.1 PFAM: homoserine dehydrogenase homoserine dehydrogenase, NAD-binding; KEGG: xac:XAC1820 homoserine dehydrogenase / aspartate kinase; homoserine dehydrogenase 1124874 4116112 Rxyl_1091 Rubrobacter xylanophilus DSM 9941 homoserine dehydrogenase YP_643869.1 1123792 D 266117 CDS YP_643870.1 108803933 4116113 1124868..1125851 1 NC_008148.1 TIGRFAM: Aspartate-semialdehyde dehydrogenase, USG-1 related; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region; KEGG: bce:BC3799 aspartate-semialdehyde dehydrogenase; aspartate semialdehyde dehydrogenase 1125851 4116113 Rxyl_1092 Rubrobacter xylanophilus DSM 9941 aspartate semialdehyde dehydrogenase YP_643870.1 1124868 D 266117 CDS YP_643871.1 108803934 4116114 1125957..1126244 1 NC_008148.1 hypothetical protein 1126244 4116114 Rxyl_1093 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643871.1 1125957 D 266117 CDS YP_643872.1 108803935 4116115 1126324..1126593 1 NC_008148.1 TIGRFAM: Putative regulatory protein, FmdB; KEGG: ade:Adeh_0196 hypothetical protein; FmdB transcriptional regulator 1126593 4116115 Rxyl_1094 Rubrobacter xylanophilus DSM 9941 FmdB transcriptional regulator YP_643872.1 1126324 D 266117 CDS YP_643873.1 108803936 4116116 1126600..1126872 1 NC_008148.1 hypothetical protein 1126872 4116116 Rxyl_1095 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643873.1 1126600 D 266117 CDS YP_643874.1 108803937 4116117 1127060..1130557 1 NC_008148.1 KEGG: mta:Moth_1872 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like; DNA polymerase III catalytic subunit, DnaE type 1130557 4116117 Rxyl_1096 Rubrobacter xylanophilus DSM 9941 DNA polymerase III catalytic subunit, DnaE type YP_643874.1 1127060 D 266117 CDS YP_643875.1 108803938 4116118 1130647..1131987 1 NC_008148.1 PFAM: amino acid permease-associated region; KEGG: psp:PSPPH_2512 amino acid transporter; amino acid permease-associated protein 1131987 4116118 Rxyl_1097 Rubrobacter xylanophilus DSM 9941 amino acid permease-associated protein YP_643875.1 1130647 D 266117 CDS YP_643876.1 108803939 4116119 complement(1131984..1133513) 1 NC_008148.1 PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: sru:SRU_2485 carboxypeptidase; carboxypeptidase 1133513 4116119 Rxyl_1098 Rubrobacter xylanophilus DSM 9941 carboxypeptidase YP_643876.1 1131984 R 266117 CDS YP_643877.1 108803940 4116120 1133622..1134914 1 NC_008148.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvu:DVU1165 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1134914 4116120 Rxyl_1099 Rubrobacter xylanophilus DSM 9941 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_643877.1 1133622 D 266117 CDS YP_643878.1 108803941 4116121 1134947..1136188 1 NC_008148.1 PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: mta:Moth_2037 histidine--tRNA ligase; ATP phosphoribosyltransferase regulatory subunit 1136188 4116121 Rxyl_1100 Rubrobacter xylanophilus DSM 9941 ATP phosphoribosyltransferase regulatory subunit YP_643878.1 1134947 D 266117 CDS YP_643879.1 108803942 4116122 1136185..1136835 1 NC_008148.1 PFAM: ATP phosphoribosyltransferase; KEGG: mta:Moth_2036 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 1136835 4116122 Rxyl_1101 Rubrobacter xylanophilus DSM 9941 ATP phosphoribosyltransferase YP_643879.1 1136185 D 266117 CDS YP_643880.1 108803943 4116123 1136825..1138081 1 NC_008148.1 PFAM: histidinol dehydrogenase; KEGG: syw:SYNW0610 histidinol dehydrogenase; histidinol dehydrogenase 1138081 4116123 Rxyl_1102 Rubrobacter xylanophilus DSM 9941 histidinol dehydrogenase YP_643880.1 1136825 D 266117 CDS YP_643881.1 108803944 4116124 1138081..1138665 1 NC_008148.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: gox:GOX0479 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1138665 4116124 Rxyl_1103 Rubrobacter xylanophilus DSM 9941 imidazoleglycerol-phosphate dehydratase YP_643881.1 1138081 D 266117 CDS YP_643882.1 108803945 4116125 1138662..1139279 1 NC_008148.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I CobB/CobQ-like glutamine amidotransferase; KEGG: cvi:CV0616 amidotransferase HisH; imidazole glycerol phosphate synthase subunit hisH 1139279 4116125 Rxyl_1104 Rubrobacter xylanophilus DSM 9941 imidazole glycerol phosphate synthase subunit hisH YP_643882.1 1138662 D 266117 CDS YP_643883.1 108803946 4116126 1139266..1139997 1 NC_008148.1 TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: mta:Moth_2032 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1139997 4116126 Rxyl_1105 Rubrobacter xylanophilus DSM 9941 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_643883.1 1139266 D 266117 CDS YP_643884.1 108803947 4116127 1140032..1140544 1 NC_008148.1 KEGG: gvi:gll2473 hypothetical protein; hypothetical protein 1140544 4116127 Rxyl_1106 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643884.1 1140032 D 266117 CDS YP_643885.1 108803948 4116128 complement(1140549..1140854) 1 NC_008148.1 hypothetical protein 1140854 4116128 Rxyl_1107 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643885.1 1140549 R 266117 CDS YP_643886.1 108803949 4116129 1140907..1142943 1 NC_008148.1 PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: ana:all2981 penicillin-binding protein; glycosyl transferase family protein 1142943 4116129 Rxyl_1108 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_643886.1 1140907 D 266117 CDS YP_643887.1 108803950 4116130 1142952..1143407 1 NC_008148.1 hypothetical protein 1143407 4116130 Rxyl_1109 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643887.1 1142952 D 266117 CDS YP_643888.1 108803951 4116853 1143481..1144926 1 NC_008148.1 PFAM: amino acid-binding ACT malic enzyme-like malic enzyme, NAD-binding; KEGG: sth:STH1319 malate oxidoreductase; malate dehydrogenase 1144926 4116853 Rxyl_1110 Rubrobacter xylanophilus DSM 9941 malate dehydrogenase YP_643888.1 1143481 D 266117 CDS YP_643889.1 108803952 4116854 1144955..1145263 1 NC_008148.1 KEGG: ade:Adeh_1216 putative ferredoxin; hypothetical protein 1145263 4116854 Rxyl_1111 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643889.1 1144955 D 266117 CDS YP_643890.1 108803953 4116855 complement(1145260..1146444) 1 NC_008148.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gsu:GSU0493 pyridine nucleotide-disulphide oxidoreductase family protein; NADH dehydrogenase 1146444 4116855 Rxyl_1112 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase YP_643890.1 1145260 R 266117 CDS YP_643891.1 108803954 4116856 1146672..1146995 1 NC_008148.1 hypothetical protein 1146995 4116856 Rxyl_1113 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643891.1 1146672 D 266117 CDS YP_643892.1 108803955 4116857 1147242..1148459 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: mpa:MAP2832 hypothetical protein; alpha/beta hydrolase fold protein domain-containing protein 1148459 4116857 Rxyl_1114 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_643892.1 1147242 D 266117 CDS YP_643893.1 108803956 4116858 complement(1148452..1149081) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gvi:glr2217 hypothetical protein; N-acetyltransferase GCN5 1149081 4116858 Rxyl_1115 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_643893.1 1148452 R 266117 CDS YP_643894.1 108803957 4116859 complement(1149174..1149947) 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: mta:Moth_0875 ABC-2; ABC transporter 1149947 4116859 Rxyl_1116 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_643894.1 1149174 R 266117 CDS YP_643895.1 108803958 4116860 complement(1149940..1150893) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_0874 ABC transporter related; ABC transporter-like protein 1150893 4116860 Rxyl_1117 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643895.1 1149940 R 266117 CDS YP_643896.1 108803959 4116861 1151068..1151859 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: efa:EF1094 sortase family protein; peptidase C60, sortase A and B 1151859 4116861 Rxyl_1118 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_643896.1 1151068 D 266117 CDS YP_643897.1 108803960 4116862 complement(1151887..1152810) 1 NC_008148.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfo:Pfl_3893 ADP-ribosylation/crystallin J1; ADP-ribosylation/crystallin J1 1152810 4116862 Rxyl_1119 Rubrobacter xylanophilus DSM 9941 ADP-ribosylation/crystallin J1 YP_643897.1 1151887 R 266117 CDS YP_643898.1 108803961 4116863 complement(1152798..1153367) 1 NC_008148.1 KEGG: gvi:glr0990 protein phosphatase homolog; protein tyrosine phosphatase/dual specificity protein phosphatase 1153367 4116863 Rxyl_1120 Rubrobacter xylanophilus DSM 9941 protein tyrosine phosphatase/dual specificity protein phosphatase YP_643898.1 1152798 R 266117 CDS YP_643899.1 108803962 4116864 complement(1153382..1153642) 1 NC_008148.1 hypothetical protein 1153642 4116864 Rxyl_1121 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643899.1 1153382 R 266117 CDS YP_643900.1 108803963 4116865 complement(1153649..1154173) 1 NC_008148.1 PFAM: molybdopterin binding domain; KEGG: bca:BCE4909 molybdenum cofactor biosynthesis protein B, putative; molybdopterin binding domain-containing protein 1154173 4116865 Rxyl_1122 Rubrobacter xylanophilus DSM 9941 molybdopterin binding domain-containing protein YP_643900.1 1153649 R 266117 CDS YP_643901.1 108803964 4116866 complement(1154170..1154814) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: gsu:GSU1123 metallo-beta-lactamase family protein; beta-lactamase-like protein 1154814 4116866 Rxyl_1123 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_643901.1 1154170 R 266117 CDS YP_643902.1 108803965 4116867 complement(1154811..1156268) 1 NC_008148.1 PFAM: peptidase M17, leucyl aminopeptidase-like; KEGG: gme:Gmet_3361 peptidase M17, leucyl aminopeptidase-like; leucyl aminopeptidase 1156268 4116867 Rxyl_1124 Rubrobacter xylanophilus DSM 9941 leucyl aminopeptidase YP_643902.1 1154811 R 266117 CDS YP_643903.1 108803966 4116868 complement(1156415..1157746) 1 NC_008148.1 KEGG: dde:Dde_0104 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region glutamine synthetase, beta-Grasp; L-glutamine synthetase 1157746 4116868 Rxyl_1125 Rubrobacter xylanophilus DSM 9941 L-glutamine synthetase YP_643903.1 1156415 R 266117 CDS YP_643904.1 108803967 4116869 1157970..1158761 1 NC_008148.1 KEGG: xcb:XC_4125 cation efflux system protein; hypothetical protein 1158761 4116869 Rxyl_1126 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643904.1 1157970 D 266117 CDS YP_643905.1 108803968 4116870 complement(1158916..1160070) 1 NC_008148.1 TIGRFAM: Enzymatic protein of unknown function; PFAM: glutamate--cysteine ligase, GCS2; KEGG: tfu:Tfu_2565 enzymatic protein of unknown function; hypothetical protein 1160070 4116870 Rxyl_1127 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643905.1 1158916 R 266117 CDS YP_643906.1 108803969 4116871 1160169..1160627 1 NC_008148.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: dra:DR2242 thiol-specific antioxidant protein, putative; redoxin 1160627 4116871 Rxyl_1128 Rubrobacter xylanophilus DSM 9941 redoxin YP_643906.1 1160169 D 266117 CDS YP_643907.1 108803970 4116872 1160624..1161727 1 NC_008148.1 KEGG: gme:Gmet_3525 lipoprotein, putative; putative lipoprotein 1161727 4116872 Rxyl_1129 Rubrobacter xylanophilus DSM 9941 putative lipoprotein YP_643907.1 1160624 D 266117 CDS YP_643908.1 108803971 4117362 1161751..1162659 1 NC_008148.1 KEGG: mth:MTH743 putative triphosphoribosyl-dephospho-CoA synthase; hypothetical protein 1162659 4117362 Rxyl_1130 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643908.1 1161751 D 266117 CDS YP_643909.1 108803972 4117363 1162745..1163506 1 NC_008148.1 shows similarity to CbiX(S); hypothetical protein 1163506 4117363 Rxyl_1131 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643909.1 1162745 D 266117 CDS YP_643910.1 108803973 4117364 1163496..1164302 1 NC_008148.1 KEGG: hal:VNG1092C hypothetical protein; hypothetical protein 1164302 4117364 Rxyl_1132 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643910.1 1163496 D 266117 CDS YP_643911.1 108803974 4117365 1164434..1165057 1 NC_008148.1 PFAM: transport-associated; transport-associated protein 1165057 4117365 Rxyl_1133 Rubrobacter xylanophilus DSM 9941 transport-associated protein YP_643911.1 1164434 D 266117 CDS YP_643912.1 108803975 4117366 complement(1165109..1166527) 1 NC_008148.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sma:SAV5048 putative phosphomannomutase; phosphomannomutase 1166527 4117366 Rxyl_1134 Rubrobacter xylanophilus DSM 9941 phosphomannomutase YP_643912.1 1165109 R 266117 CDS YP_643913.1 108803976 4117367 1166577..1167119 1 NC_008148.1 PFAM: Abortive infection protein; KEGG: syn:slr1288 hypothetical protein; abortive infection protein 1167119 4117367 Rxyl_1135 Rubrobacter xylanophilus DSM 9941 abortive infection protein YP_643913.1 1166577 D 266117 CDS YP_643914.1 108803977 4117368 1167116..1167658 1 NC_008148.1 hypothetical protein 1167658 4117368 Rxyl_1136 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643914.1 1167116 D 266117 CDS YP_643915.1 108803978 4117369 1167704..1168357 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: sth:STH2376 sortase, putative; peptidase C60, sortase A and B 1168357 4117369 Rxyl_1137 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_643915.1 1167704 D 266117 CDS YP_643916.1 108803979 4117370 1168361..1170424 1 NC_008148.1 PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: sma:SAV5458 putative penicillin-binding protein; peptidoglycan glycosyltransferase 1170424 4117370 Rxyl_1138 Rubrobacter xylanophilus DSM 9941 peptidoglycan glycosyltransferase YP_643916.1 1168361 D 266117 CDS YP_643917.1 108803980 4117371 1170434..1171282 1 NC_008148.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sco:SCO7822 probable prolipoprotein diacylglyceryl transferase.; prolipoprotein diacylglyceryl transferase 1171282 4117371 Rxyl_1139 Rubrobacter xylanophilus DSM 9941 prolipoprotein diacylglyceryl transferase YP_643917.1 1170434 D 266117 CDS YP_643918.1 108803981 4117372 1171300..1171758 1 NC_008148.1 PFAM: ferric-uptake regulator; KEGG: cac:CAC1682 ferric uptake regulation protein; ferric uptake regulator family protein 1171758 4117372 Rxyl_1140 Rubrobacter xylanophilus DSM 9941 ferric uptake regulator family protein YP_643918.1 1171300 D 266117 CDS YP_643919.1 108803982 4117373 1171749..1172681 1 NC_008148.1 PFAM: periplasmic solute binding protein; KEGG: eba:ebA1814 ABC transporter, periplasmic binding protein precursor; periplasmic solute binding protein 1172681 4117373 Rxyl_1141 Rubrobacter xylanophilus DSM 9941 periplasmic solute binding protein YP_643919.1 1171749 D 266117 CDS YP_643920.1 108803983 4117374 1172681..1173463 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH1507 ABC transporter ATP-binding protein; ABC transporter-like protein 1173463 4117374 Rxyl_1142 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643920.1 1172681 D 266117 CDS YP_643921.1 108803984 4117375 1173456..1174319 1 NC_008148.1 PFAM: ABC-3; KEGG: lin:lin1962 similar metal cations ABC transporter (permease protein); hypothetical protein 1174319 4117375 Rxyl_1143 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643921.1 1173456 D 266117 CDS YP_643922.1 108803985 4117376 1174321..1174734 1 NC_008148.1 PFAM: ferric-uptake regulator; KEGG: dra:DR0865 ferric uptake regulation protein, putative; ferric uptake regulator family protein 1174734 4117376 Rxyl_1144 Rubrobacter xylanophilus DSM 9941 ferric uptake regulator family protein YP_643922.1 1174321 D 266117 CDS YP_643923.1 108803986 4117377 complement(1174697..1175326) 1 NC_008148.1 PFAM: Rhomboid-like protein; KEGG: oih:OB1923 hypothetical protein; rhomboid-like protein 1175326 4117377 Rxyl_1145 Rubrobacter xylanophilus DSM 9941 rhomboid-like protein YP_643923.1 1174697 R 266117 CDS YP_643924.1 108803987 4117378 complement(1175397..1175852) 1 NC_008148.1 KEGG: bmb:BruAb1_0811 hypothetical protein; hypothetical protein 1175852 4117378 Rxyl_1146 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643924.1 1175397 R 266117 CDS YP_643925.1 108803988 4117379 1175947..1176816 1 NC_008148.1 KEGG: dde:Dde_2402 apurinic endonuclease (APN1); TIGRFAM: apurinic endonuclease (APN1); PFAM: Xylose isomerase-like TIM barrel; SMART: AP endonuclease, family 2; endonuclease IV 1176816 4117379 Rxyl_1147 Rubrobacter xylanophilus DSM 9941 endonuclease IV YP_643925.1 1175947 D 266117 CDS YP_643926.1 108803989 4117380 1176826..1177125 1 NC_008148.1 PFAM: helix-turn-helix motif; KEGG: cdi:DIP1456 putative DNA-binding protein; XRE family transcriptional regulator 1177125 4117380 Rxyl_1148 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_643926.1 1176826 D 266117 CDS YP_643927.1 108803990 4116833 complement(1177377..1177670) 1 NC_008148.1 hypothetical protein 1177670 4116833 Rxyl_1149 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643927.1 1177377 R 266117 CDS YP_643928.1 108803991 4116834 complement(1177667..1178014) 1 NC_008148.1 hypothetical protein 1178014 4116834 Rxyl_1150 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643928.1 1177667 R 266117 CDS YP_643929.1 108803992 4116835 complement(1178067..1179083) 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1135 hypothetical protein; FAD dependent oxidoreductase 1179083 4116835 Rxyl_1151 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_643929.1 1178067 R 266117 CDS YP_643930.1 108803993 4116836 complement(1179080..1179985) 1 NC_008148.1 PFAM: histone deacetylase superfamily; KEGG: dar:Daro_2377 histone deacetylase superfamily; histone deacetylase superfamily protein 1179985 4116836 Rxyl_1152 Rubrobacter xylanophilus DSM 9941 histone deacetylase superfamily protein YP_643930.1 1179080 R 266117 CDS YP_643931.1 108803994 4116837 1180061..1180876 1 NC_008148.1 PFAM: protein of unknown function DUF72; KEGG: sat:SYN_01732 hypothetical cytosolic protein; hypothetical protein 1180876 4116837 Rxyl_1153 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643931.1 1180061 D 266117 CDS YP_643932.1 108803995 4116838 1180884..1181636 1 NC_008148.1 PFAM: peptidase A24A, prepilin type IV peptidase A24A-like; KEGG: mta:Moth_1550 peptidase A24A-like; peptidase A24A-like protein 1181636 4116838 Rxyl_1154 Rubrobacter xylanophilus DSM 9941 peptidase A24A-like protein YP_643932.1 1180884 D 266117 CDS YP_643933.1 108803996 4116839 complement(1181645..1182595) 1 NC_008148.1 KEGG: nfa:nfa48610 hypothetical protein; hypothetical protein 1182595 4116839 Rxyl_1155 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643933.1 1181645 R 266117 CDS YP_643934.1 108803997 4116840 complement(1182570..1184591) 1 NC_008148.1 TIGRFAM: GGDEF domain; PFAM: GGDEF EAL; KEGG: ana:all1175 hypothetical protein; diguanylate cyclase/phosphodiesterase 1184591 4116840 Rxyl_1156 Rubrobacter xylanophilus DSM 9941 diguanylate cyclase/phosphodiesterase YP_643934.1 1182570 R 266117 CDS YP_643935.1 108803998 4116841 complement(1184636..1185163) 1 NC_008148.1 PFAM: RDD; KEGG: sth:STH460 hypothetical protein; RDD domain-containing protein 1185163 4116841 Rxyl_1157 Rubrobacter xylanophilus DSM 9941 RDD domain-containing protein YP_643935.1 1184636 R 266117 CDS YP_643936.1 108803999 4116842 complement(1185209..1185616) 1 NC_008148.1 PFAM: methylation; KEGG: syn:sll1694 cyanobacterial pilin; Tfp pilus assembly protein PilE 1185616 4116842 Rxyl_1158 Rubrobacter xylanophilus DSM 9941 Tfp pilus assembly protein PilE YP_643936.1 1185209 R 266117 CDS YP_643937.1 108804000 4116843 complement(1185780..1187243) 1 NC_008148.1 hypothetical protein 1187243 4116843 Rxyl_1159 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643937.1 1185780 R 266117 CDS YP_643938.1 108804001 4116844 complement(1187243..1187866) 1 NC_008148.1 TIGRFAM: Prepilin-type cleavage/methylation-like; prepilin-type cleavage/methylation-like protein 1187866 4116844 Rxyl_1160 Rubrobacter xylanophilus DSM 9941 prepilin-type cleavage/methylation-like protein YP_643938.1 1187243 R 266117 CDS YP_643939.1 108804002 4116845 complement(1187863..1188288) 1 NC_008148.1 TIGRFAM: Prepilin-type cleavage/methylation-like; prepilin-type cleavage/methylation-like protein 1188288 4116845 Rxyl_1161 Rubrobacter xylanophilus DSM 9941 prepilin-type cleavage/methylation-like protein YP_643939.1 1187863 R 266117 CDS YP_643940.1 108804003 4116846 complement(1188281..1188862) 1 NC_008148.1 PFAM: methylation; Tfp pilus assembly protein FimT 1188862 4116846 Rxyl_1162 Rubrobacter xylanophilus DSM 9941 Tfp pilus assembly protein FimT YP_643940.1 1188281 R 266117 CDS YP_643941.1 108804004 4116847 complement(1188871..1189644) 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: cyb:CYB_2489 RNA polymerase sigma factor, group 3; RNA polymerase sigma-28 subunit 1189644 4116847 Rxyl_1163 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_643941.1 1188871 R 266117 CDS YP_643942.1 108804005 4116848 complement(1189653..1190864) 1 NC_008148.1 PFAM: type II secretion system protein; KEGG: gvi:gll2665 pilin biogenesis protein; type II secretion system protein 1190864 4116848 Rxyl_1164 Rubrobacter xylanophilus DSM 9941 type II secretion system protein YP_643942.1 1189653 R 266117 CDS YP_643943.1 108804006 4116849 complement(1190865..1191968) 1 NC_008148.1 KEGG: ttj:TTHA0365 type IV pilus assembly protein, pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase; pilus retraction ATPase PilT 1191968 4116849 Rxyl_1165 Rubrobacter xylanophilus DSM 9941 pilus retraction ATPase PilT YP_643943.1 1190865 R 266117 CDS YP_643944.1 108804007 4116850 complement(1191965..1193683) 1 NC_008148.1 PFAM: type II secretion system protein E General secretory system II, protein E-like; SMART: ATPase; KEGG: mta:Moth_1554 type II secretion system protein E; type II secretion system protein E 1193683 4116850 Rxyl_1166 Rubrobacter xylanophilus DSM 9941 type II secretion system protein E YP_643944.1 1191965 R 266117 CDS YP_643945.1 108804008 4116851 1193937..1195064 1 NC_008148.1 KEGG: gsu:GSU0146 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase; twitching motility protein 1195064 4116851 Rxyl_1167 Rubrobacter xylanophilus DSM 9941 twitching motility protein YP_643945.1 1193937 D 266117 CDS YP_643946.1 108804009 4116852 1195075..1196241 1 NC_008148.1 PFAM: peptidase M29, aminopeptidase II; KEGG: det:DET0911 aminopeptidase protein; peptidase M29, aminopeptidase II 1196241 4116852 Rxyl_1168 Rubrobacter xylanophilus DSM 9941 peptidase M29, aminopeptidase II YP_643946.1 1195075 D 266117 CDS YP_643947.1 108804010 4116814 1196246..1196485 1 NC_008148.1 hypothetical protein 1196485 4116814 Rxyl_1169 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643947.1 1196246 D 266117 CDS YP_643948.1 108804011 4116815 1196552..1197268 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: gvi:gll1352 hypothetical protein; HAD family hydrolase 1197268 4116815 Rxyl_1170 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_643948.1 1196552 D 266117 CDS YP_643949.1 108804012 4116816 1197265..1197861 1 NC_008148.1 PFAM: GTP cyclohydrolase I; KEGG: chy:CHY_0955 GTP cyclohydrolase I; GTP cyclohydrolase 1197861 4116816 Rxyl_1171 Rubrobacter xylanophilus DSM 9941 GTP cyclohydrolase YP_643949.1 1197265 D 266117 CDS YP_643950.1 108804013 4116817 complement(1197836..1198636) 1 NC_008148.1 PFAM: ROK; KEGG: fra:Francci3_3492 polyphosphate-glucose phosphotransferase; polyphosphate glucokinase 1198636 4116817 Rxyl_1172 Rubrobacter xylanophilus DSM 9941 polyphosphate glucokinase YP_643950.1 1197836 R 266117 CDS YP_643951.1 108804014 4116818 complement(1198638..1199666) 1 NC_008148.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: tel:tll1492 ABC transporter ATP-binding protein; ABC transporter-like protein 1199666 4116818 Rxyl_1173 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_643951.1 1198638 R 266117 CDS YP_643952.1 108804015 4116819 complement(1199663..1201249) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:alr1383 ferric iron transport system permease protein; binding-protein-dependent transport systems inner membrane component 1201249 4116819 Rxyl_1174 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport systems inner membrane component YP_643952.1 1199663 R 266117 CDS YP_643953.1 108804016 4116820 complement(1201249..1202367) 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 1; KEGG: ana:alr1382 ferric iron transport system substrate-binding protein; extracellular solute-binding protein 1202367 4116820 Rxyl_1175 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_643953.1 1201249 R 266117 CDS YP_643954.1 108804017 4116821 complement(1202376..1203002) 1 NC_008148.1 KEGG: fra:Francci3_1068 hypothetical protein; putative periplasmic ligand-binding sensor protein 1203002 4116821 Rxyl_1176 Rubrobacter xylanophilus DSM 9941 putative periplasmic ligand-binding sensor protein YP_643954.1 1202376 R 266117 CDS YP_643955.1 108804018 4116822 complement(1203019..1203858) 1 NC_008148.1 PFAM: iron permease FTR1; KEGG: pfl:PFL_3255 membrane protein, putative; iron permease FTR1 1203858 4116822 Rxyl_1177 Rubrobacter xylanophilus DSM 9941 iron permease FTR1 YP_643955.1 1203019 R 266117 CDS YP_643956.1 108804019 4116823 1204001..1204954 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: gka:GK0839 NDP-sugar epimerase; NAD-dependent epimerase/dehydratase 1204954 4116823 Rxyl_1178 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_643956.1 1204001 D 266117 CDS YP_643957.1 108804020 4116824 1204960..1206987 1 NC_008148.1 KEGG: mta:Moth_2225 hypothetical protein; hypothetical protein 1206987 4116824 Rxyl_1179 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643957.1 1204960 D 266117 CDS YP_643958.1 108804021 4116825 1206984..1207901 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; KEGG: gka:GK2681 hypothetical protein; hypothetical protein 1207901 4116825 Rxyl_1180 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643958.1 1206984 D 266117 CDS YP_643959.1 108804022 4116826 1207898..1209334 1 NC_008148.1 PFAM: sulfatase type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: gka:GK2680 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 1209334 4116826 Rxyl_1181 Rubrobacter xylanophilus DSM 9941 type I phosphodiesterase/nucleotide pyrophosphatase YP_643959.1 1207898 D 266117 CDS YP_643960.1 108804023 4116827 1209331..1210017 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: gka:GK2679 dolichyl-phosphate mannose synthase; glycosyl transferase family protein 1210017 4116827 Rxyl_1182 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_643960.1 1209331 D 266117 CDS YP_643961.1 108804024 4116828 complement(1210014..1211063) 1 NC_008148.1 catalyzes the formation of oxaloglycolate from tartrate; also catalyzes the formation of pyruvate from malate and glycerate from tartrate; tartrate dehydrogenase 1211063 4116828 Rxyl_1183 Rubrobacter xylanophilus DSM 9941 tartrate dehydrogenase YP_643961.1 1210014 R 266117 CDS YP_643962.1 108804025 4116829 1211131..1211556 1 NC_008148.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sco:SCO1156 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 1211556 4116829 Rxyl_1184 Rubrobacter xylanophilus DSM 9941 pyridoxamine 5'-phosphate oxidase-like protein YP_643962.1 1211131 D 266117 CDS YP_643963.1 108804026 4116830 1211561..1212205 1 NC_008148.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase methyltransferase small Methyltransferase type 11 Methyltransferase type 12; KEGG: gme:Gmet_1420 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1212205 4116830 Rxyl_1185 Rubrobacter xylanophilus DSM 9941 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_643963.1 1211561 D 266117 CDS YP_643964.1 108804027 4116831 complement(1212181..1212669) 1 NC_008148.1 PFAM: Hemerythrin HHE cation binding region; KEGG: dar:Daro_3950 hemerythrin HHE cation binding region; hemerythrin HHE cation binding protein 1212669 4116831 Rxyl_1186 Rubrobacter xylanophilus DSM 9941 hemerythrin HHE cation binding protein YP_643964.1 1212181 R 266117 CDS YP_643965.1 108804028 4116832 1212803..1213600 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: mbo:Mb2655 possible methyltransferase (methylase); type 11 methyltransferase 1213600 4116832 Rxyl_1187 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_643965.1 1212803 D 266117 CDS YP_643966.1 108804029 4116092 1213727..1214431 1 NC_008148.1 PFAM: protein of unknown function DUF542, ScdA-like Hemerythrin HHE cation binding region; KEGG: gka:GK0771 hypothetical protein; hypothetical protein 1214431 4116092 Rxyl_1188 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643966.1 1213727 D 266117 CDS YP_643967.1 108804030 4116093 1214439..1214864 1 NC_008148.1 hypothetical protein 1214864 4116093 Rxyl_1189 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643967.1 1214439 D 266117 CDS YP_643968.1 108804031 4116094 1214872..1215162 1 NC_008148.1 hypothetical protein 1215162 4116094 Rxyl_1190 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643968.1 1214872 D 266117 CDS YP_643969.1 108804032 4116095 1215159..1215470 1 NC_008148.1 PFAM: protein of unknown function DUF59; KEGG: tma:TM0487 hypothetical protein; hypothetical protein 1215470 4116095 Rxyl_1191 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643969.1 1215159 D 266117 CDS YP_643970.1 108804033 4116096 1215488..1215727 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ttj:TTHA0177 ferredoxin; 4Fe-4S ferredoxin 1215727 4116096 Rxyl_1192 Rubrobacter xylanophilus DSM 9941 4Fe-4S ferredoxin YP_643970.1 1215488 D 266117 CDS YP_643971.1 108804034 4116097 1215879..1216151 1 NC_008148.1 KEGG: sco:SCO6531 putative ATP/GTP binding protein; hypothetical protein 1216151 4116097 Rxyl_1193 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643971.1 1215879 D 266117 CDS YP_643972.1 108804035 4116098 1216132..1216437 1 NC_008148.1 PFAM: ferredoxin; KEGG: ath:At1g10960 ferredoxin, chloroplast, putative; ferredoxin 1216437 4116098 Rxyl_1194 Rubrobacter xylanophilus DSM 9941 ferredoxin YP_643972.1 1216132 D 266117 CDS YP_643973.1 108804036 4116099 complement(1216490..1217656) 1 NC_008148.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pha:PSHAa1103 electron transport complex protein RnfC; respiratory-chain NADH dehydrogenase domain-containing protein 1217656 4116099 Rxyl_1195 Rubrobacter xylanophilus DSM 9941 respiratory-chain NADH dehydrogenase domain-containing protein YP_643973.1 1216490 R 266117 CDS YP_643974.1 108804037 4116100 complement(1217683..1217946) 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ttj:TTHA0177 ferredoxin; 4Fe-4S ferredoxin 1217946 4116100 Rxyl_1196 Rubrobacter xylanophilus DSM 9941 4Fe-4S ferredoxin YP_643974.1 1217683 R 266117 CDS YP_643975.1 108804038 4116101 complement(1218041..1218592) 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: sco:SCO4603 NADH dehydrogenase subunit NuoI2; 4Fe-4S ferredoxin 1218592 4116101 Rxyl_1197 Rubrobacter xylanophilus DSM 9941 4Fe-4S ferredoxin YP_643975.1 1218041 R 266117 CDS YP_643976.1 108804039 4116102 1218795..1219430 1 NC_008148.1 hypothetical protein 1219430 4116102 Rxyl_1198 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643976.1 1218795 D 266117 CDS YP_643977.1 108804040 4116103 complement(1219469..1220149) 1 NC_008148.1 KEGG: tbd:Tbd_2172 hypothetical protein; hypothetical protein 1220149 4116103 Rxyl_1199 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643977.1 1219469 R 266117 CDS YP_643978.1 108804041 4116104 complement(1220153..1220500) 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: cgb:cg2252 double-stranded beta-helix domain; cupin 2 barrel domain-containing protein 1220500 4116104 Rxyl_1200 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_643978.1 1220153 R 266117 CDS YP_643979.1 108804042 4116105 1220619..1221305 1 NC_008148.1 KEGG: cef:CE1525 putative transcription regulator; cAMP-binding protein 1221305 4116105 Rxyl_1201 Rubrobacter xylanophilus DSM 9941 cAMP-binding protein YP_643979.1 1220619 D 266117 CDS YP_643980.1 108804043 4116106 complement(1221318..1221680) 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; cupin 2 barrel domain-containing protein 1221680 4116106 Rxyl_1202 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_643980.1 1221318 R 266117 CDS YP_643981.1 108804044 4116107 1221908..1222384 1 NC_008148.1 hypothetical protein 1222384 4116107 Rxyl_1203 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643981.1 1221908 D 266117 CDS YP_643982.1 108804045 4116108 1222384..1223568 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: gka:GK0766 nitrate/nitrite transporter; major facilitator transporter 1223568 4116108 Rxyl_1204 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_643982.1 1222384 D 266117 CDS YP_643983.1 108804046 4116109 1223572..1227222 1 NC_008148.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: sco:SCO0216 nitrate reductase alpha chain NarG2; respiratory nitrate reductase subunit alpha apoprotein 1227222 4116109 Rxyl_1205 Rubrobacter xylanophilus DSM 9941 respiratory nitrate reductase subunit alpha apoprotein YP_643983.1 1223572 D 266117 CDS YP_643984.1 108804047 4116110 1227222..1228838 1 NC_008148.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: bsu:BG11082 nitrate reductase beta chain; respiratory nitrate reductase subunit beta 1228838 4116110 Rxyl_1206 Rubrobacter xylanophilus DSM 9941 respiratory nitrate reductase subunit beta YP_643984.1 1227222 D 266117 CDS YP_643985.1 108804048 4116111 1228838..1229455 1 NC_008148.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: sco:SCO0218 putative nitrate reductase delta chain NarJ2; respiratory nitrate reductase chaperone NarJ 1229455 4116111 Rxyl_1207 Rubrobacter xylanophilus DSM 9941 respiratory nitrate reductase chaperone NarJ YP_643985.1 1228838 D 266117 CDS YP_643986.1 108804049 4116270 1229452..1230234 1 NC_008148.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: ser:SERP1984 respiratory nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 1230234 4116270 Rxyl_1208 Rubrobacter xylanophilus DSM 9941 respiratory nitrate reductase subunit gamma YP_643986.1 1229452 D 266117 CDS YP_643987.1 108804050 4116271 1230231..1230875 1 NC_008148.1 KEGG: sru:SRU_1212 NAD dependent epimerase/dehydratase family; NAD-dependent epimerase/dehydratase family protein 1230875 4116271 Rxyl_1209 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase family protein YP_643987.1 1230231 D 266117 CDS YP_643988.1 108804051 4116272 1230989..1232023 1 NC_008148.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU2357 hypothetical protein; mechanosensitive ion channel MscS 1232023 4116272 Rxyl_1210 Rubrobacter xylanophilus DSM 9941 mechanosensitive ion channel MscS YP_643988.1 1230989 D 266117 CDS YP_643989.1 108804052 4116273 1232064..1232759 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: sru:SRU_1974 hydrolase, NUDIX family protein; NUDIX hydrolase 1232759 4116273 Rxyl_1211 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_643989.1 1232064 D 266117 CDS YP_643990.1 108804053 4116274 complement(1232857..1234167) 1 NC_008148.1 PFAM: CDP-alcohol phosphatidyltransferase Nucleotidyl transferase; KEGG: afu:AF0263 A. fulgidus predicted coding region AF0263; di-myo-inositol-1,3'-phosphate-1'-phosphate synthase/CTP:L-myo-inositol-1-phosphate cytidylyltransferase 1234167 4116274 Rxyl_1212 Rubrobacter xylanophilus DSM 9941 di-myo-inositol-1,3'-phosphate-1'-phosphate synthase/CTP:L-myo-inositol-1-phosphate cytidylyltransferase YP_643990.1 1232857 R 266117 CDS YP_643991.1 108804054 4116275 1234416..1235771 1 NC_008148.1 PFAM: Myo-inositol-1-phosphate synthase Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: ade:Adeh_1535 inositol-3-phosphate synthase; inositol-3-phosphate synthase 1235771 4116275 Rxyl_1213 Rubrobacter xylanophilus DSM 9941 inositol-3-phosphate synthase YP_643991.1 1234416 D 266117 CDS YP_643992.1 108804055 4116276 1235848..1236150 1 NC_008148.1 PFAM: protein of unknown function DUF59; KEGG: tma:TM0487 hypothetical protein; hypothetical protein 1236150 4116276 Rxyl_1214 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643992.1 1235848 D 266117 CDS YP_643993.1 108804056 4116277 1236332..1236823 1 NC_008148.1 PFAM: HhH-GPD; KEGG: gvi:gll2018 probable DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase II 1236823 4116277 Rxyl_1215 Rubrobacter xylanophilus DSM 9941 DNA-3-methyladenine glycosylase II YP_643993.1 1236332 D 266117 CDS YP_643994.1 108804057 4116278 1236914..1237318 1 NC_008148.1 PFAM: protein of unknown function UPF0047; KEGG: ade:Adeh_0927 protein of unknown function UPF0047; hypothetical protein 1237318 4116278 Rxyl_1216 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643994.1 1236914 D 266117 CDS YP_643995.1 108804058 4116279 1237570..1238922 1 NC_008148.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: jan:Jann_0866 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1238922 4116279 Rxyl_1217 Rubrobacter xylanophilus DSM 9941 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_643995.1 1237570 D 266117 CDS YP_643996.1 108804059 4116280 1238996..1239562 1 NC_008148.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: fnu:FN1709 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1239562 4116280 Rxyl_1218 Rubrobacter xylanophilus DSM 9941 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_643996.1 1238996 D 266117 CDS YP_643997.1 108804060 4116281 1239609..1240469 1 NC_008148.1 hypothetical protein 1240469 4116281 Rxyl_1219 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643997.1 1239609 D 266117 CDS YP_643998.1 108804061 4116282 1240534..1241052 1 NC_008148.1 PFAM: ThiJ/PfpI; KEGG: sru:SRU_1723 protease I; ThiJ/PfpI 1241052 4116282 Rxyl_1220 Rubrobacter xylanophilus DSM 9941 ThiJ/PfpI YP_643998.1 1240534 D 266117 CDS YP_643999.1 108804062 4116283 1241096..1241539 1 NC_008148.1 hypothetical protein 1241539 4116283 Rxyl_1221 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_643999.1 1241096 D 266117 CDS YP_644000.1 108804063 4116284 complement(1241536..1243233) 1 NC_008148.1 KEGG: lma:LmjF34.0690 hypothetical protein, conserved; hypothetical protein 1243233 4116284 Rxyl_1222 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644000.1 1241536 R 266117 CDS YP_644001.1 108804064 4116285 complement(1243506..1243949) 1 NC_008148.1 PFAM: ferric-uptake regulator; KEGG: btk:BT9727_3832 transcriptional regulator, Fur family; ferric uptake regulator family protein 1243949 4116285 Rxyl_1224 Rubrobacter xylanophilus DSM 9941 ferric uptake regulator family protein YP_644001.1 1243506 R 266117 CDS YP_644002.1 108804065 4116286 1244007..1245674 1 NC_008148.1 PFAM: peptidase S49; KEGG: ade:Adeh_1138 signal peptide peptidase SppA, 36K type; peptidase S49 1245674 4116286 Rxyl_1225 Rubrobacter xylanophilus DSM 9941 peptidase S49 YP_644002.1 1244007 D 266117 CDS YP_644003.1 108804066 4116287 1245702..1246877 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: sth:STH2595 putative fosmidmycin resistance protein; major facilitator transporter 1246877 4116287 Rxyl_1226 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644003.1 1245702 D 266117 CDS YP_644004.1 108804067 4116288 1246957..1249401 1 NC_008148.1 PFAM: MMPL; KEGG: fra:Francci3_4060 putative membrane protein; hypothetical protein 1249401 4116288 Rxyl_1227 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644004.1 1246957 D 266117 CDS YP_644005.1 108804068 4116231 1249455..1249871 1 NC_008148.1 PFAM: ferric-uptake regulator; KEGG: mta:Moth_1147 ferric uptake regulator, FUR family; ferric uptake regulator family protein 1249871 4116231 Rxyl_1228 Rubrobacter xylanophilus DSM 9941 ferric uptake regulator family protein YP_644005.1 1249455 D 266117 CDS YP_644006.1 108804069 4116232 complement(1249894..1250649) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: mba:Mbar_A3142 metal dependent hydrolase; beta-lactamase-like protein 1250649 4116232 Rxyl_1229 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644006.1 1249894 R 266117 CDS YP_644007.1 108804070 4116233 complement(1250646..1251266) 1 NC_008148.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sma:SAV1501 hypothetical protein; PA-phosphatase-like phosphoesterase 1251266 4116233 Rxyl_1230 Rubrobacter xylanophilus DSM 9941 PA-phosphatase-like phosphoesterase YP_644007.1 1250646 R 266117 CDS YP_644008.1 108804071 4116234 complement(1251349..1252233) 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit 1252233 4116234 Rxyl_1231 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_644008.1 1251349 R 266117 CDS YP_644009.1 108804072 4116235 1252436..1253368 1 NC_008148.1 TIGRFAM: GGDEF domain; PFAM: GGDEF; KEGG: ttj:TTHA0989 GGDEF domain protein; diguanylate cyclase 1253368 4116235 Rxyl_1232 Rubrobacter xylanophilus DSM 9941 diguanylate cyclase YP_644009.1 1252436 D 266117 CDS YP_644010.1 108804073 4116236 1253383..1253697 1 NC_008148.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: dra:DR0446 hypothetical protein; antibiotic biosynthesis monooxygenase 1253697 4116236 Rxyl_1233 Rubrobacter xylanophilus DSM 9941 antibiotic biosynthesis monooxygenase YP_644010.1 1253383 D 266117 CDS YP_644011.1 108804074 4116237 1253996..1254694 1 NC_008148.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: syf:Synpcc7942_0127 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 1254694 4116237 Rxyl_1234 Rubrobacter xylanophilus DSM 9941 Crp/FNR family transcriptional regulator YP_644011.1 1253996 D 266117 CDS YP_644012.1 108804075 4116238 complement(1254691..1256031) 1 NC_008148.1 PFAM: sulfatase; KEGG: dde:Dde_1201 sulfatase, putative; sulfatase 1256031 4116238 Rxyl_1235 Rubrobacter xylanophilus DSM 9941 sulfatase YP_644012.1 1254691 R 266117 CDS YP_644013.1 108804076 4116239 1256338..1257333 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: noc:Noc_1516 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1257333 4116239 Rxyl_1236 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_644013.1 1256338 D 266117 CDS YP_644014.1 108804077 4116240 complement(1257330..1258616) 1 NC_008148.1 PFAM: polysaccharide biosynthesis protein; KEGG: mpa:MAP0433c hypothetical protein; polysaccharide biosynthesis protein 1258616 4116240 Rxyl_1237 Rubrobacter xylanophilus DSM 9941 polysaccharide biosynthesis protein YP_644014.1 1257330 R 266117 CDS YP_644015.1 108804078 4116241 complement(1258621..1259643) 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: gka:GK2679 dolichyl-phosphate mannose synthase; glycosyl transferase family protein 1259643 4116241 Rxyl_1238 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_644015.1 1258621 R 266117 CDS YP_644016.1 108804079 4116242 1259891..1261927 1 NC_008148.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein 1261927 4116242 Rxyl_1239 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644016.1 1259891 D 266117 CDS YP_644017.1 108804080 4116243 complement(1262005..1263204) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ath:At4g33030 UDP-sulfoquinovose synthase / sulfite:UDP-glucose sulfotransferase / sulfolipid biosynthesis protein (SQD1); UDP-sulfoquinovose synthase 1263204 4116243 Rxyl_1240 Rubrobacter xylanophilus DSM 9941 UDP-sulfoquinovose synthase YP_644017.1 1262005 R 266117 CDS YP_644018.1 108804081 4116244 1263429..1264994 1 NC_008148.1 KEGG: gsu:GSU1489 hypothetical protein; hypothetical protein 1264994 4116244 Rxyl_1241 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644018.1 1263429 D 266117 CDS YP_644019.1 108804082 4116245 1265116..1267179 1 NC_008148.1 KEGG: cvi:CV0692 probable transport portein; hypothetical protein 1267179 4116245 Rxyl_1242 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644019.1 1265116 D 266117 CDS YP_644020.1 108804083 4116246 1267256..1268074 1 NC_008148.1 KEGG: mta:Moth_0571 undecaprenol kinase, putative; TIGRFAM: undecaprenol kinase, putative; PFAM: Bacitracin resistance protein BacA; undecaprenyl-diphosphatase 1268074 4116246 Rxyl_1243 Rubrobacter xylanophilus DSM 9941 undecaprenyl-diphosphatase YP_644020.1 1267256 D 266117 CDS YP_644021.1 108804084 4116247 1268257..1269372 1 NC_008148.1 PFAM: prephenate dehydratase Chorismate mutase amino acid-binding ACT; KEGG: aae:aq_951 chorismate mutase/prephenate dehydratase; prephenate dehydratase/chorismate mutase 1269372 4116247 Rxyl_1244 Rubrobacter xylanophilus DSM 9941 prephenate dehydratase/chorismate mutase YP_644021.1 1268257 D 266117 CDS YP_644022.1 108804085 4116248 1269666..1270388 1 NC_008148.1 hypothetical protein 1270388 4116248 Rxyl_1246 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644022.1 1269666 D 266117 CDS YP_644023.1 108804086 4116249 1270534..1271127 1 NC_008148.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ttj:TTHA0359 cold shock protein; cold-shock DNA-binding protein family protein 1271127 4116249 Rxyl_1247 Rubrobacter xylanophilus DSM 9941 cold-shock DNA-binding protein family protein YP_644023.1 1270534 D 266117 CDS YP_644024.1 108804087 4116250 complement(1271134..1271796) 1 NC_008148.1 PFAM: Phosphoglycerate mutase; KEGG: ade:Adeh_2893 phosphoglycerate mutase; phosphoglycerate mutase 1271796 4116250 Rxyl_1248 Rubrobacter xylanophilus DSM 9941 phosphoglycerate mutase YP_644024.1 1271134 R 266117 CDS YP_644025.1 108804088 4116407 1271921..1272718 1 NC_008148.1 hypothetical protein 1272718 4116407 Rxyl_1249 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644025.1 1271921 D 266117 CDS YP_644026.1 108804089 4116408 complement(1272709..1272960) 1 NC_008148.1 PFAM: glutaredoxin glutathione S-transferase-like; KEGG: cpe:CPE2439 probable glutaredoxin; glutaredoxin 1272960 4116408 Rxyl_1250 Rubrobacter xylanophilus DSM 9941 glutaredoxin YP_644026.1 1272709 R 266117 CDS YP_644027.1 108804090 4116409 1273232..1275007 1 NC_008148.1 KEGG: bce:BC0606 vancomycin B-type resistance protein VanW; hypothetical protein 1275007 4116409 Rxyl_1251 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644027.1 1273232 D 266117 CDS YP_644028.1 108804091 4116410 complement(1275008..1275478) 1 NC_008148.1 PFAM: Endoribonuclease L-PSP; KEGG: nfa:nfa3440 hypothetical protein; endoribonuclease L-PSP 1275478 4116410 Rxyl_1252 Rubrobacter xylanophilus DSM 9941 endoribonuclease L-PSP YP_644028.1 1275008 R 266117 CDS YP_644029.1 108804092 4116411 complement(1275482..1275976) 1 NC_008148.1 PFAM: flavin reductase-like, FMN-binding; KEGG: syn:slr0001 hypothetical protein; flavin reductase-like protein 1275976 4116411 Rxyl_1253 Rubrobacter xylanophilus DSM 9941 flavin reductase-like protein YP_644029.1 1275482 R 266117 CDS YP_644030.1 108804093 4116412 1276042..1277085 1 NC_008148.1 KEGG: sma:SAV4116 putative membrane protein; hypothetical protein 1277085 4116412 Rxyl_1254 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644030.1 1276042 D 266117 CDS YP_644031.1 108804094 4116413 1277082..1277648 1 NC_008148.1 KEGG: sth:STH494 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 1277648 4116413 Rxyl_1255 Rubrobacter xylanophilus DSM 9941 molybdopterin-guanine dinucleotide biosynthesis protein A YP_644031.1 1277082 D 266117 CDS YP_644032.1 108804095 4116414 1277645..1278232 1 NC_008148.1 PFAM: protein of unknown function DUF218; KEGG: rru:Rru_A2551 protein of unknown function DUF218; hypothetical protein 1278232 4116414 Rxyl_1256 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644032.1 1277645 D 266117 CDS YP_644033.1 108804096 4116415 1278241..1279074 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sth:STH2110 hypothetical protein; hypothetical protein 1279074 4116415 Rxyl_1257 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644033.1 1278241 D 266117 CDS YP_644034.1 108804097 4116416 1279099..1279641 1 NC_008148.1 KEGG: sma:SAV1204 putative IS630 family transposase; IS630 family transposase 1279641 4116416 Rxyl_1258 Rubrobacter xylanophilus DSM 9941 IS630 family transposase YP_644034.1 1279099 D 266117 CDS YP_644035.1 108804098 4116417 1279641..1280237 1 NC_008148.1 hypothetical protein 1280237 4116417 Rxyl_1259 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644035.1 1279641 D 266117 CDS YP_644036.1 108804099 4116418 1280301..1280930 1 NC_008148.1 hypothetical protein 1280930 4116418 Rxyl_1260 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644036.1 1280301 D 266117 CDS YP_644037.1 108804100 4116419 complement(1280927..1281655) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: mka:MK1542 predicted Zn-dependent hydrolase of the beta-lactamase superfamily; beta-lactamase-like protein 1281655 4116419 Rxyl_1261 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644037.1 1280927 R 266117 CDS YP_644038.1 108804101 4116420 1281788..1283587 1 NC_008148.1 PFAM: glycoside hydrolase 15-related; KEGG: sma:SAV98 putative glycosyl hydrolase; glycoside hydrolase 15-like protein 1283587 4116420 Rxyl_1262 Rubrobacter xylanophilus DSM 9941 glycoside hydrolase 15-like protein YP_644038.1 1281788 D 266117 CDS YP_644039.1 108804102 4116421 1283667..1284497 1 NC_008148.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ade:Adeh_3575 nitrilase/cyanide hydratase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1284497 4116421 Rxyl_1263 Rubrobacter xylanophilus DSM 9941 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_644039.1 1283667 D 266117 CDS YP_644040.1 108804103 4116422 complement(1284508..1285869) 1 NC_008148.1 KEGG: noc:Noc_1578 L-lactate permease; L-lactate permease 1285869 4116422 Rxyl_1264 Rubrobacter xylanophilus DSM 9941 L-lactate permease YP_644040.1 1284508 R 266117 CDS YP_644041.1 108804104 4116423 1285914..1286525 1 NC_008148.1 PFAM: helix-turn-helix motif Cupin 2, conserved barrel; KEGG: atc:AGR_C_418 hypothetical protein; XRE family transcriptional regulator 1286525 4116423 Rxyl_1265 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_644041.1 1285914 D 266117 CDS YP_644042.1 108804105 4116424 complement(1286501..1287004) 1 NC_008148.1 hypothetical protein 1287004 4116424 Rxyl_1266 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644042.1 1286501 R 266117 CDS YP_644043.1 108804106 4116425 complement(1287091..1288224) 1 NC_008148.1 PFAM: Quinolinate phosphoribosyl transferase; KEGG: tko:TK1676 nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyl transferase 1288224 4116425 Rxyl_1267 Rubrobacter xylanophilus DSM 9941 quinolinate phosphoribosyl transferase YP_644043.1 1287091 R 266117 CDS YP_644044.1 108804107 4115994 1288442..1291651 1 NC_008148.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS; multi-sensor hybrid histidine kinase 1291651 4115994 Rxyl_1268 Rubrobacter xylanophilus DSM 9941 multi-sensor hybrid histidine kinase YP_644044.1 1288442 D 266117 CDS YP_644045.1 108804108 4115995 1291665..1293212 1 NC_008148.1 PFAM: gamma-glutamyltranspeptidase; KEGG: gvi:glr2359 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1293212 4115995 Rxyl_1269 Rubrobacter xylanophilus DSM 9941 gamma-glutamyltransferase YP_644045.1 1291665 D 266117 CDS YP_644046.1 108804109 4115996 1293205..1294125 1 NC_008148.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: tth:TTC1132 arginase; arginase 1294125 4115996 Rxyl_1270 Rubrobacter xylanophilus DSM 9941 arginase YP_644046.1 1293205 D 266117 CDS YP_644047.1 108804110 4115997 complement(1294122..1295558) 1 NC_008148.1 PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk; cation transporter 1295558 4115997 Rxyl_1271 Rubrobacter xylanophilus DSM 9941 cation transporter YP_644047.1 1294122 R 266117 CDS YP_644048.1 108804111 4115998 complement(1295548..1296879) 1 NC_008148.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 1296879 trkA 4115998 trkA Rubrobacter xylanophilus DSM 9941 potassium transporter peripheral membrane protein YP_644048.1 1295548 R 266117 CDS YP_644049.1 108804112 4115999 complement(1296890..1297564) 1 NC_008148.1 PFAM: TrkA-N TrkA-C 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: cpe:CPE1890 probable potassium uptake system protein; hypothetical protein 1297564 4115999 Rxyl_1273 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644049.1 1296890 R 266117 CDS YP_644050.1 108804113 4116000 complement(1297561..1298889) 1 NC_008148.1 PFAM: cation transporter; KEGG: mta:Moth_1755 K+ transporter trk; cation transporter 1298889 4116000 Rxyl_1274 Rubrobacter xylanophilus DSM 9941 cation transporter YP_644050.1 1297561 R 266117 CDS YP_644051.1 108804114 4116001 complement(1298915..1299793) 1 NC_008148.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding ATP-citrate lyase/succinyl-CoA ligase; KEGG: afu:AF2185 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha 1299793 4116001 Rxyl_1275 Rubrobacter xylanophilus DSM 9941 succinyl-CoA synthetase subunit alpha YP_644051.1 1298915 R 266117 CDS YP_644052.1 108804115 4116002 complement(1299797..1300948) 1 NC_008148.1 KEGG: lxx:Lxx19720 succinyl-CoA synthetase, beta chain; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: phosphoribosylglycinamide synthetase ATP-citrate lyase/succinyl-CoA ligase ATP-grasp; succinyl-CoA synthetase subunit beta 1300948 4116002 Rxyl_1276 Rubrobacter xylanophilus DSM 9941 succinyl-CoA synthetase subunit beta YP_644052.1 1299797 R 266117 CDS YP_644053.1 108804116 4116003 1301145..1303490 1 NC_008148.1 PFAM: peptidase M6, immune inhibitor A; KEGG: sma:SAV5155 putative secreted protease; peptidase M6, immune inhibitor A 1303490 4116003 Rxyl_1277 Rubrobacter xylanophilus DSM 9941 peptidase M6, immune inhibitor A YP_644053.1 1301145 D 266117 CDS YP_644054.1 108804117 4116004 1303552..1304241 1 NC_008148.1 PFAM: protein of unknown function DUF554; KEGG: afu:AF1248 hypothetical protein; hypothetical protein 1304241 4116004 Rxyl_1278 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644054.1 1303552 D 266117 CDS YP_644055.1 108804118 4116005 complement(1304258..1304869) 1 NC_008148.1 hypothetical protein 1304869 4116005 Rxyl_1279 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644055.1 1304258 R 266117 CDS YP_644056.1 108804119 4116006 1305034..1305255 1 NC_008148.1 hypothetical protein 1305255 4116006 Rxyl_1280 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644056.1 1305034 D 266117 CDS YP_644057.1 108804120 4116007 1305265..1305492 1 NC_008148.1 hypothetical protein 1305492 4116007 Rxyl_1281 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644057.1 1305265 D 266117 CDS YP_644058.1 108804121 4116008 1305499..1305927 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tte:TTE1219 lactoylglutathione lyase and related lyase; methylmalonyl-CoA epimerase 1305927 4116008 Rxyl_1282 Rubrobacter xylanophilus DSM 9941 methylmalonyl-CoA epimerase YP_644058.1 1305499 D 266117 CDS YP_644059.1 108804122 4116009 1305942..1307537 1 NC_008148.1 KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 1307537 4116009 Rxyl_1283 Rubrobacter xylanophilus DSM 9941 methylmalonyl-CoA mutase YP_644059.1 1305942 D 266117 CDS YP_644060.1 108804123 4116010 complement(1307579..1308070) 1 NC_008148.1 PFAM: regulatory protein, MarR; KEGG: rso:RSc3139 putative transcription regulator protein; MarR family transcriptional regulator 1308070 4116010 Rxyl_1284 Rubrobacter xylanophilus DSM 9941 MarR family transcriptional regulator YP_644060.1 1307579 R 266117 CDS YP_644061.1 108804124 4116011 1308131..1309363 1 NC_008148.1 PFAM: monooxygenase, FAD-binding; KEGG: plu:plu2236 hypothetical protein; monooxygenase 1309363 4116011 Rxyl_1285 Rubrobacter xylanophilus DSM 9941 monooxygenase YP_644061.1 1308131 D 266117 CDS YP_644062.1 108804125 4116012 1309469..1309987 1 NC_008148.1 KEGG: mhu:Mhun_0018 peptidase S8 and S53, subtilisin, kexin, sedolisin; hypothetical protein 1309987 4116012 Rxyl_1286 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644062.1 1309469 D 266117 CDS YP_644063.1 108804126 4116013 1310104..1311279 1 NC_008148.1 PFAM: protein of unknown function DUF59; KEGG: sco:SCO5152 putative ATP-binding protein; hypothetical protein 1311279 4116013 Rxyl_1287 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644063.1 1310104 D 266117 CDS YP_644064.1 108804127 4116951 complement(1311299..1312288) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: reu:Reut_A0157 beta-lactamase-like; beta-lactamase-like protein 1312288 4116951 Rxyl_1288 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644064.1 1311299 R 266117 CDS YP_644065.1 108804128 4116952 complement(1312295..1312744) 1 NC_008148.1 PFAM: MaoC-like dehydratase; KEGG: pfl:PFL_2678 MaoC family protein; MaoC-like dehydratase 1312744 4116952 Rxyl_1289 Rubrobacter xylanophilus DSM 9941 MaoC-like dehydratase YP_644065.1 1312295 R 266117 CDS YP_644066.1 108804129 4116953 complement(1312751..1313728) 1 NC_008148.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1313728 4116953 Rxyl_1290 Rubrobacter xylanophilus DSM 9941 malate dehydrogenase YP_644066.1 1312751 R 266117 CDS YP_644067.1 108804130 4116954 1313918..1314493 1 NC_008148.1 PFAM: nitroreductase; KEGG: bld:BLi00873 hypothetical protein; nitroreductase 1314493 4116954 Rxyl_1291 Rubrobacter xylanophilus DSM 9941 nitroreductase YP_644067.1 1313918 D 266117 CDS YP_644068.1 108804131 4116955 complement(1314670..1315485) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: sco:SCO0130 beta-lactamase; beta-lactamase-like protein 1315485 4116955 Rxyl_1292 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644068.1 1314670 R 266117 CDS YP_644069.1 108804132 4116956 1315610..1316617 1 NC_008148.1 PFAM: Allergen V5/Tpx-1 related; KEGG: fra:Francci3_3457 allergen V5/TPX-1 related; allergen V5/Tpx-1-like protein 1316617 4116956 Rxyl_1293 Rubrobacter xylanophilus DSM 9941 allergen V5/Tpx-1-like protein YP_644069.1 1315610 D 266117 CDS YP_644070.1 108804133 4116957 complement(1316571..1317833) 1 NC_008148.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase Lycopene beta and epsilon cyclase; KEGG: fra:Francci3_0537 geranylgeranyl reductase; geranylgeranyl reductase 1317833 4116957 Rxyl_1294 Rubrobacter xylanophilus DSM 9941 geranylgeranyl reductase YP_644070.1 1316571 R 266117 CDS YP_644071.1 108804134 4116958 complement(1318147..1320066) 1 NC_008148.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: mhu:Mhun_0018 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1320066 4116958 Rxyl_1295 Rubrobacter xylanophilus DSM 9941 peptidase S8/S53 subtilisin kexin sedolisin YP_644071.1 1318147 R 266117 CDS YP_644072.1 108804135 4116959 complement(1320202..1321242) 1 NC_008148.1 hypothetical protein 1321242 4116959 Rxyl_1296 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644072.1 1320202 R 266117 CDS YP_644073.1 108804136 4116960 1321391..1322401 1 NC_008148.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mta:Moth_0993 isocitrate dehydrogenase (NAD+); isocitrate dehydrogenase (NAD+) 1322401 4116960 Rxyl_1297 Rubrobacter xylanophilus DSM 9941 isocitrate dehydrogenase (NAD+) YP_644073.1 1321391 D 266117 CDS YP_644074.1 108804137 4116961 1322460..1323584 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: cyb:CYB_2399 glycosyl transferase, group 1; group 1 glycosyl transferase 1323584 4116961 Rxyl_1298 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_644074.1 1322460 D 266117 CDS YP_644075.1 108804138 4116962 1323581..1324042 1 NC_008148.1 PFAM: GtrA-like protein; KEGG: pca:Pcar_1743 YngA; GtrA-like protein 1324042 4116962 Rxyl_1299 Rubrobacter xylanophilus DSM 9941 GtrA-like protein YP_644075.1 1323581 D 266117 CDS YP_644076.1 108804139 4116963 1324426..1326345 1 NC_008148.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) TGS Anticodon-binding Threonyl/alanyl tRNA synthetase, SAD; KEGG: ttj:TTHA1875 threonyl-tRNA synthetase; Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase 1326345 4116963 Rxyl_1300 Rubrobacter xylanophilus DSM 9941 Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase YP_644076.1 1324426 D 266117 CDS YP_644077.1 108804140 4116964 1326530..1327057 1 NC_008148.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: tfu:Tfu_2066 initiation factor 3; translation initiation factor 3 1327057 4116964 Rxyl_1301 Rubrobacter xylanophilus DSM 9941 translation initiation factor 3 YP_644077.1 1326530 D 266117 CDS YP_644078.1 108804141 4116965 1327191..1327388 1 NC_008148.1 PFAM: ribosomal protein L35; KEGG: tfu:Tfu_2065 ribosomal protein L35; 50S ribosomal protein L35 1327388 4116965 Rxyl_1302 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L35 YP_644078.1 1327191 D 266117 CDS YP_644079.1 108804142 4116966 1327389..1327790 1 NC_008148.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1327790 rplT 4116966 rplT Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L20 YP_644079.1 1327389 D 266117 CDS YP_644080.1 108804143 4116967 1327804..1328475 1 NC_008148.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sth:STH1097 rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU 1328475 4116967 Rxyl_1304 Rubrobacter xylanophilus DSM 9941 tRNA/rRNA methyltransferase SpoU YP_644080.1 1327804 D 266117 CDS YP_644081.1 108804144 4116968 1328483..1329514 1 NC_008148.1 KEGG: mta:Moth_1751 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc aminoacyl tRNA synthetase, class II-like; phenylalanyl-tRNA synthetase subunit alpha 1329514 4116968 Rxyl_1305 Rubrobacter xylanophilus DSM 9941 phenylalanyl-tRNA synthetase subunit alpha YP_644081.1 1328483 D 266117 CDS YP_644082.1 108804145 4116969 1329534..1331966 1 NC_008148.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mta:Moth_1750 phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 1331966 4116969 Rxyl_1306 Rubrobacter xylanophilus DSM 9941 phenylalanyl-tRNA synthetase subunit beta YP_644082.1 1329534 D 266117 CDS YP_644083.1 108804146 4115974 complement(1331929..1332522) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH2121 hypothetical protein; N-acetyltransferase GCN5 1332522 4115974 Rxyl_1307 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_644083.1 1331929 R 266117 CDS YP_644084.1 108804147 4115975 1332609..1332983 1 NC_008148.1 KEGG: gvi:gll2423 hypothetical protein; hypothetical protein 1332983 4115975 Rxyl_1308 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644084.1 1332609 D 266117 CDS YP_644085.1 108804148 4115976 1333006..1333578 1 NC_008148.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: chy:CHY_1567 DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase 1333578 4115976 Rxyl_1309 Rubrobacter xylanophilus DSM 9941 DNA-3-methyladenine glycosylase YP_644085.1 1333006 D 266117 CDS YP_644086.1 108804149 4115977 complement(1333562..1335676) 1 NC_008148.1 KEGG: tel:tll0049 penicillin-binding protein; TIGRFAM: Penicillin-binding protein 1A; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; penicillin-binding protein 1A 1335676 4115977 Rxyl_1310 Rubrobacter xylanophilus DSM 9941 penicillin-binding protein 1A YP_644086.1 1333562 R 266117 CDS YP_644087.1 108804150 4115978 1335753..1336919 1 NC_008148.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib RNA-binding S4; KEGG: bha:BH3228 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 1336919 4115978 Rxyl_1311 Rubrobacter xylanophilus DSM 9941 tyrosyl-tRNA synthetase YP_644087.1 1335753 D 266117 CDS YP_644088.1 108804151 4115979 1342354..1343700 1 NC_008148.1 KEGG: hma:pNG7288 putative phosphoesterase; hypothetical protein 1343700 4115979 Rxyl_1312 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644088.1 1342354 D 266117 CDS YP_644089.1 108804152 4115980 1343768..1344160 1 NC_008148.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: bcl:ABC1986 general stress protein GSP160; TraR/DksA family transcriptional regulator 1344160 4115980 Rxyl_1313 Rubrobacter xylanophilus DSM 9941 TraR/DksA family transcriptional regulator YP_644089.1 1343768 D 266117 CDS YP_644090.1 108804153 4115981 1344212..1345396 1 NC_008148.1 KEGG: btk:BT9727_0285 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase (arsA); PFAM: Anion-transporting ATPase; arsenite-activated ATPase 1345396 4115981 Rxyl_1314 Rubrobacter xylanophilus DSM 9941 arsenite-activated ATPase YP_644090.1 1344212 D 266117 CDS YP_644091.1 108804154 4115982 1345380..1345598 1 NC_008148.1 hypothetical protein 1345598 4115982 Rxyl_1315 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644091.1 1345380 D 266117 CDS YP_644092.1 108804155 4115983 1345870..1346766 1 NC_008148.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 1346766 4115983 Rxyl_1316 Rubrobacter xylanophilus DSM 9941 pyridoxal biosynthesis lyase PdxS YP_644092.1 1345870 D 266117 CDS YP_644093.1 108804156 4115984 1346756..1347370 1 NC_008148.1 PFAM: SNO glutamine amidotransferase CobB/CobQ-like glutamine amidotransferase; KEGG: mta:Moth_0010 SNO glutamine amidotransferase; SNO glutamine amidotransferase 1347370 4115984 Rxyl_1317 Rubrobacter xylanophilus DSM 9941 SNO glutamine amidotransferase YP_644093.1 1346756 D 266117 CDS YP_644094.1 108804157 4115985 1347357..1348109 1 NC_008148.1 PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein; hypothetical protein 1348109 4115985 Rxyl_1318 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644094.1 1347357 D 266117 CDS YP_644095.1 108804158 4115986 complement(1348128..1348448) 1 NC_008148.1 PFAM: small multidrug resistance protein; KEGG: sco:SCO1918 putative integral membrane protein; small multidrug resistance protein 1348448 4115986 Rxyl_1319 Rubrobacter xylanophilus DSM 9941 small multidrug resistance protein YP_644095.1 1348128 R 266117 CDS YP_644096.1 108804159 4115987 complement(1348445..1349056) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: bce:BC1059 transcriptional regulator, TetR family; TetR family transcriptional regulator 1349056 4115987 Rxyl_1320 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_644096.1 1348445 R 266117 CDS YP_644097.1 108804160 4115988 1349068..1349658 1 NC_008148.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mta:Moth_2140 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 1349658 4115988 Rxyl_1321 Rubrobacter xylanophilus DSM 9941 5-formyltetrahydrofolate cyclo-ligase YP_644097.1 1349068 D 266117 CDS YP_644098.1 108804161 4115989 1349747..1350286 1 NC_008148.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: tte:TTE1178 Holliday junction resolvasome endonuclease subunit; crossover junction endodeoxyribonuclease RuvC 1350286 4115989 Rxyl_1322 Rubrobacter xylanophilus DSM 9941 crossover junction endodeoxyribonuclease RuvC YP_644098.1 1349747 D 266117 CDS YP_644099.1 108804162 4115990 1350290..1350880 1 NC_008148.1 KEGG: cvi:CV4223 holliday junction DNA helicase; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA RuvA-like; SMART: Helix-hairpin-helix DNA-binding, class 1; Holliday junction DNA helicase subunit RuvA 1350880 4115990 Rxyl_1323 Rubrobacter xylanophilus DSM 9941 Holliday junction DNA helicase subunit RuvA YP_644099.1 1350290 D 266117 CDS YP_644100.1 108804163 4115991 1350881..1351948 1 NC_008148.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1351948 ruvB 4115991 ruvB Rubrobacter xylanophilus DSM 9941 Holliday junction DNA helicase RuvB YP_644100.1 1350881 D 266117 CDS YP_644101.1 108804164 4115992 1351979..1352257 1 NC_008148.1 hypothetical protein 1352257 4115992 Rxyl_1325 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644101.1 1351979 D 266117 CDS YP_644102.1 108804165 4115993 complement(1352268..1353968) 1 NC_008148.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1353968 4115993 Rxyl_1326 Rubrobacter xylanophilus DSM 9941 dihydroxy-acid dehydratase YP_644102.1 1352268 R 266117 CDS YP_644103.1 108804166 4116014 1354035..1354601 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0391 biphenyl-2,3-diol 1,2-dioxygenase III; glyoxalase/bleomycin resistance protein/dioxygenase 1354601 4116014 Rxyl_1327 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_644103.1 1354035 D 266117 CDS YP_644104.1 108804167 4116015 1354635..1354859 1 NC_008148.1 KEGG: mta:Moth_1699 hypothetical protein; hypothetical protein 1354859 4116015 Rxyl_1328 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644104.1 1354635 D 266117 CDS YP_644105.1 108804168 4116016 1354866..1355870 1 NC_008148.1 PFAM: Queuosine biosynthesis protein; KEGG: mta:Moth_1695 S-adenosylmethionine; queuosine biosynthesis protein 1355870 4116016 Rxyl_1329 Rubrobacter xylanophilus DSM 9941 queuosine biosynthesis protein YP_644105.1 1354866 D 266117 CDS YP_644106.1 108804169 4116017 1355891..1356988 1 NC_008148.1 KEGG: sth:STH1166 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1356988 4116017 Rxyl_1330 Rubrobacter xylanophilus DSM 9941 queuine tRNA-ribosyltransferase YP_644106.1 1355891 D 266117 CDS YP_644107.1 108804170 4116018 complement(1356975..1358147) 1 NC_008148.1 KEGG: tth:TTC1121 hypothetical protein; hypothetical protein 1358147 4116018 Rxyl_1331 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644107.1 1356975 R 266117 CDS YP_644108.1 108804171 4116019 complement(1358369..1359085) 1 NC_008148.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/FNR family transcriptional regulator 1359085 4116019 Rxyl_1332 Rubrobacter xylanophilus DSM 9941 Crp/FNR family transcriptional regulator YP_644108.1 1358369 R 266117 CDS YP_644109.1 108804172 4116020 1359294..1359983 1 NC_008148.1 KEGG: ttj:TTHA1483 conserved putative protein; hypothetical protein 1359983 4116020 Rxyl_1333 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644109.1 1359294 D 266117 CDS YP_644110.1 108804173 4116021 1360043..1361506 1 NC_008148.1 TIGRFAM: protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sco:SCO6160 putative SecDF protein-export membrane protein; protein-export membrane protein SecD 1361506 4116021 Rxyl_1334 Rubrobacter xylanophilus DSM 9941 protein-export membrane protein SecD YP_644110.1 1360043 D 266117 CDS YP_644111.1 108804174 4116022 1361519..1362397 1 NC_008148.1 TIGRFAM: SecF protein; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: fra:Francci3_1374 SecF protein; protein translocase subunit secF 1362397 4116022 Rxyl_1335 Rubrobacter xylanophilus DSM 9941 protein translocase subunit secF YP_644111.1 1361519 D 266117 CDS YP_644112.1 108804175 4116023 1362451..1362879 1 NC_008148.1 KEGG: mma:MM2706 hypothetical protein; hypothetical protein 1362879 4116023 Rxyl_1336 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644112.1 1362451 D 266117 CDS YP_644113.1 108804176 4116024 1362906..1364555 1 NC_008148.1 PFAM: ABC-1; KEGG: gka:GK1754 ABC transporter; 2-octaprenylphenol hydroxylase 1364555 4116024 Rxyl_1337 Rubrobacter xylanophilus DSM 9941 2-octaprenylphenol hydroxylase YP_644113.1 1362906 D 266117 CDS YP_644114.1 108804177 4116025 1364590..1366818 1 NC_008148.1 KEGG: tfu:Tfu_2090 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT TGS metal-dependent phosphohydrolase, HD subdomain RelA/SpoT; SMART: Metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 1366818 4116025 Rxyl_1338 Rubrobacter xylanophilus DSM 9941 (p)ppGpp synthetase I SpoT/RelA YP_644114.1 1364590 D 266117 CDS YP_644115.1 108804178 4116026 1366830..1367408 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: gsu:GSU1123 metallo-beta-lactamase family protein; beta-lactamase-like protein 1367408 4116026 Rxyl_1339 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644115.1 1366830 D 266117 CDS YP_644116.1 108804179 4116027 1367405..1368679 1 NC_008148.1 KEGG: efa:EF1971 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) Anticodon-binding; histidyl-tRNA synthetase 1368679 4116027 Rxyl_1340 Rubrobacter xylanophilus DSM 9941 histidyl-tRNA synthetase YP_644116.1 1367405 D 266117 CDS YP_644117.1 108804180 4116028 1368720..1369421 1 NC_008148.1 PFAM: Silent information regulator protein Sir2; KEGG: pai:PAE3500 NAD-dependent deacetylase; silent information regulator protein Sir2 1369421 4116028 Rxyl_1341 Rubrobacter xylanophilus DSM 9941 silent information regulator protein Sir2 YP_644117.1 1368720 D 266117 CDS YP_644118.1 108804181 4116029 1369429..1370238 1 NC_008148.1 PFAM: Ion transport protein Ion transport 2; KEGG: det:DET0408 cation channel family protein; Ion transport protein 1370238 4116029 Rxyl_1342 Rubrobacter xylanophilus DSM 9941 Ion transport protein YP_644118.1 1369429 D 266117 CDS YP_644119.1 108804182 4116030 complement(1370144..1371712) 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: gvi:gll3051 hypothetical protein; glycosyl transferase family protein 1371712 4116030 Rxyl_1343 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_644119.1 1370144 R 266117 CDS YP_644120.1 108804183 4116031 complement(1372892..1373467) 1 NC_008148.1 PFAM: NodS Methyltransferase type 11 Methyltransferase type 12; KEGG: dra:DRA0130 methyltransferase, putative; type 12 methyltransferase 1373467 4116031 Rxyl_1345 Rubrobacter xylanophilus DSM 9941 type 12 methyltransferase YP_644120.1 1372892 R 266117 CDS YP_644121.1 108804184 4116032 complement(1373467..1374561) 1 NC_008148.1 KEGG: gvi:glr3048 hypothetical protein; hypothetical protein 1374561 4116032 Rxyl_1346 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644121.1 1373467 R 266117 CDS YP_644122.1 108804185 4117166 complement(1374558..1375148) 1 NC_008148.1 PFAM: polysaccharide deacetylase; KEGG: sth:STH2168 polysaccharide deacetylase; polysaccharide deacetylase 1375148 4117166 Rxyl_1347 Rubrobacter xylanophilus DSM 9941 polysaccharide deacetylase YP_644122.1 1374558 R 266117 CDS YP_644123.1 108804186 4117167 1375310..1376005 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1376005 4117167 Rxyl_1348 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_644123.1 1375310 D 266117 CDS YP_644124.1 108804187 4117168 1376020..1377339 1 NC_008148.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa22540 putative flavocytochrome C; fumarate reductase/succinate dehydrogenase flavoprotein-like protein 1377339 4117168 Rxyl_1349 Rubrobacter xylanophilus DSM 9941 fumarate reductase/succinate dehydrogenase flavoprotein-like protein YP_644124.1 1376020 D 266117 CDS YP_644125.1 108804188 4117169 complement(1377336..1378427) 1 NC_008148.1 ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 1378427 4117169 Rxyl_1350 Rubrobacter xylanophilus DSM 9941 carboxylate-amine ligase YP_644125.1 1377336 R 266117 CDS YP_644126.1 108804189 4117170 complement(1378452..1380254) 1 NC_008148.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD tRNA synthetase, class II (D, K and N) nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: chy:CHY_2204 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 1380254 4117170 Rxyl_1351 Rubrobacter xylanophilus DSM 9941 aspartyl-tRNA synthetase YP_644126.1 1378452 R 266117 CDS YP_644127.1 108804190 4117171 1380523..1381338 1 NC_008148.1 hypothetical protein 1381338 4117171 Rxyl_1352 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644127.1 1380523 D 266117 CDS YP_644128.1 108804191 4117172 1381382..1382551 1 NC_008148.1 PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: chy:CHY_2199 cysteine desulfurase; class V aminotransferase 1382551 4117172 Rxyl_1353 Rubrobacter xylanophilus DSM 9941 class V aminotransferase YP_644128.1 1381382 D 266117 CDS YP_644129.1 108804192 4117173 1382557..1384023 1 NC_008148.1 PFAM: nitrogen-fixing NifU-like-like tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: chy:CHY_2197 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1384023 4117173 Rxyl_1354 Rubrobacter xylanophilus DSM 9941 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_644129.1 1382557 D 266117 CDS YP_644130.1 108804193 4117174 1384039..1384428 1 NC_008148.1 KEGG: lxx:Lxx10890 secreted protein; hypothetical protein 1384428 4117174 Rxyl_1355 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644130.1 1384039 D 266117 CDS YP_644131.1 108804194 4117175 1384425..1384700 1 NC_008148.1 hypothetical protein 1384700 4117175 Rxyl_1356 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644131.1 1384425 D 266117 CDS YP_644132.1 108804195 4117176 1384697..1384975 1 NC_008148.1 hypothetical protein 1384975 4117176 Rxyl_1357 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644132.1 1384697 D 266117 CDS YP_644133.1 108804196 4117177 1384972..1385748 1 NC_008148.1 PFAM: Bacterio-opsin activator, HTH sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sma:SAV3013 putative RNA polymerase sigma factor; RNA polymerase sigma-28 subunit 1385748 4117177 Rxyl_1358 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_644133.1 1384972 D 266117 CDS YP_644134.1 108804197 4117178 1385783..1388431 1 NC_008148.1 KEGG: deh:cbdb_A65 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase, class IIc phosphoesterase, DHHA1 Threonyl/alanyl tRNA synthetase, SAD; alanyl-tRNA synthetase 1388431 4117178 Rxyl_1359 Rubrobacter xylanophilus DSM 9941 alanyl-tRNA synthetase YP_644134.1 1385783 D 266117 CDS YP_644135.1 108804198 4117179 1388428..1388847 1 NC_008148.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H-like fold; KEGG: nfa:nfa36430 putative Holliday junction resolvase; Holliday junction resolvase YqgF 1388847 4117179 Rxyl_1360 Rubrobacter xylanophilus DSM 9941 Holliday junction resolvase YqgF YP_644135.1 1388428 D 266117 CDS YP_644136.1 108804199 4117180 1388844..1389956 1 NC_008148.1 PFAM: aminodeoxychorismate lyase; KEGG: cpe:CPE1773 conserved hypothetical protein; aminodeoxychorismate lyase 1389956 4117180 Rxyl_1361 Rubrobacter xylanophilus DSM 9941 aminodeoxychorismate lyase YP_644136.1 1388844 D 266117 CDS YP_644137.1 108804200 4117181 1389958..1390812 1 NC_008148.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; KEGG: mta:Moth_1558 shikimate 5-dehydrogenase; shikimate dehydrogenase 1390812 4117181 Rxyl_1362 Rubrobacter xylanophilus DSM 9941 shikimate dehydrogenase YP_644137.1 1389958 D 266117 CDS YP_644138.1 108804201 4117182 1390878..1391555 1 NC_008148.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: gka:GK1178 ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase 1391555 4117182 Rxyl_1363 Rubrobacter xylanophilus DSM 9941 ribulose-5-phosphate 3-epimerase YP_644138.1 1390878 D 266117 CDS YP_644139.1 108804202 4117183 1391764..1392873 1 NC_008148.1 KEGG: ade:Adeh_2742 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding bifunctional deaminase-reductase-like; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 1392873 4117183 Rxyl_1364 Rubrobacter xylanophilus DSM 9941 diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_644139.1 1391764 D 266117 CDS YP_644140.1 108804203 4117184 1392854..1393489 1 NC_008148.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1393489 4117184 Rxyl_1365 Rubrobacter xylanophilus DSM 9941 riboflavin synthase subunit alpha YP_644140.1 1392854 D 266117 CDS YP_644141.1 108804204 4117185 1393479..1394681 1 NC_008148.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: gme:Gmet_1626 3,4-dihydroxy-2-butanone 4-phosphate synthase:GTP cyclohydrolase II; GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase 1394681 4117185 Rxyl_1366 Rubrobacter xylanophilus DSM 9941 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase YP_644141.1 1393479 D 266117 CDS YP_644142.1 108804205 4116033 1394682..1395221 1 NC_008148.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: gka:GK2294 riboflavin synthasebeta subunit; 6,7-dimethyl-8-ribityllumazine synthase 1395221 4116033 Rxyl_1367 Rubrobacter xylanophilus DSM 9941 6,7-dimethyl-8-ribityllumazine synthase YP_644142.1 1394682 D 266117 CDS YP_644143.1 108804206 4116034 complement(1395175..1395390) 1 NC_008148.1 PFAM: ribosomal protein L28; KEGG: tfu:Tfu_0645 ribosomal protein L28; 50S ribosomal protein L28 1395390 4116034 Rxyl_1368 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L28 YP_644143.1 1395175 R 266117 CDS YP_644144.1 108804207 4116035 1395572..1397152 1 NC_008148.1 PFAM: Dak phosphatase; KEGG: cpe:CPE1732 conserved hypothetical protein; Dak phosphatase 1397152 4116035 Rxyl_1369 Rubrobacter xylanophilus DSM 9941 Dak phosphatase YP_644144.1 1395572 D 266117 CDS YP_644145.1 108804208 4116036 1397149..1397964 1 NC_008148.1 TIGRFAM: degV family protein; PFAM: DegV; KEGG: sth:STH1449 hypothetical protein; degV family protein 1397964 4116036 Rxyl_1370 Rubrobacter xylanophilus DSM 9941 degV family protein YP_644145.1 1397149 D 266117 CDS YP_644146.1 108804209 4116037 1397945..1400077 1 NC_008148.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase-like nucleic acid binding, OB-fold, tRNA/helicase-type DEAD/DEAH box helicase-like; KEGG: sth:STH1384 ATP-dependent DNA helicase; ATP-dependent DNA helicase RecG 1400077 4116037 Rxyl_1371 Rubrobacter xylanophilus DSM 9941 ATP-dependent DNA helicase RecG YP_644146.1 1397945 D 266117 CDS YP_644147.1 108804210 4116038 1400080..1400613 1 NC_008148.1 PFAM: putative RNA methylase conserved hypothetical protein 95 methyltransferase small; KEGG: ade:Adeh_1733 hypothetical protein; hypothetical protein 1400613 4116038 Rxyl_1372 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644147.1 1400080 D 266117 CDS YP_644148.1 108804211 4116039 1400610..1401104 1 NC_008148.1 KEGG: ctc:CTC01234 phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein Cytidyltransferase-related; PFAM: cytidylyltransferase; phosphopantetheine adenylyltransferase 1401104 4116039 Rxyl_1373 Rubrobacter xylanophilus DSM 9941 phosphopantetheine adenylyltransferase YP_644148.1 1400610 D 266117 CDS YP_644149.1 108804212 4116040 1401138..1401596 1 NC_008148.1 KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H; ATPase subunit H 1401596 4116040 Rxyl_1374 Rubrobacter xylanophilus DSM 9941 ATPase subunit H YP_644149.1 1401138 D 266117 CDS YP_644150.1 108804213 4116041 1401612..1402070 1 NC_008148.1 hypothetical protein 1402070 4116041 Rxyl_1375 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644150.1 1401612 D 266117 CDS YP_644151.1 108804214 4116042 1402114..1402299 1 NC_008148.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1402299 rpmF 4116042 rpmF Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L32 YP_644151.1 1402114 D 266117 CDS YP_644152.1 108804215 4116043 1402328..1403338 1 NC_008148.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: ava:Ava_2728 fatty acid/phospholipid synthesis protein; phosphate:acyl-[acyl carrier protein] acyltransferase 1403338 4116043 Rxyl_1377 Rubrobacter xylanophilus DSM 9941 phosphate:acyl-[acyl carrier protein] acyltransferase YP_644152.1 1402328 D 266117 CDS YP_644153.1 108804216 4116044 1403335..1404282 1 NC_008148.1 KEGG: btk:BT9727_1077 3-oxoacyl-[acyl-carrier-protein] synthase III protein 1; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 1404282 4116044 Rxyl_1378 Rubrobacter xylanophilus DSM 9941 3-oxoacyl-ACP synthase YP_644153.1 1403335 D 266117 CDS YP_644154.1 108804217 4116045 1404315..1405136 1 NC_008148.1 PFAM: acyl transferase region; KEGG: sru:SRU_0043 malonyl CoA-acyl carrier protein transacylase; acyl transferase domain-containing protein 1405136 4116045 Rxyl_1379 Rubrobacter xylanophilus DSM 9941 acyl transferase domain-containing protein YP_644154.1 1404315 D 266117 CDS YP_644155.1 108804218 4116046 1405133..1405585 1 NC_008148.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: bcz:BCZK4963 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase 1405585 4116046 Rxyl_1380 Rubrobacter xylanophilus DSM 9941 3-hydroxyacyl-[acyl-carrier-protein] dehydratase YP_644155.1 1405133 D 266117 CDS YP_644156.1 108804219 4116047 1405582..1406328 1 NC_008148.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1190 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 1406328 4116047 Rxyl_1381 Rubrobacter xylanophilus DSM 9941 3-oxoacyl-ACP reductase YP_644156.1 1405582 D 266117 CDS YP_644157.1 108804220 4116048 1406405..1406650 1 NC_008148.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: tel:tsl1872 acyl carrier protein; acyl carrier protein 1406650 4116048 Rxyl_1382 Rubrobacter xylanophilus DSM 9941 acyl carrier protein YP_644157.1 1406405 D 266117 CDS YP_644158.1 108804221 4116049 1406647..1407894 1 NC_008148.1 PFAM: beta-ketoacyl synthase; KEGG: chy:CHY_1445 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-ACP synthase 1407894 4116049 Rxyl_1383 Rubrobacter xylanophilus DSM 9941 3-oxoacyl-ACP synthase YP_644158.1 1406647 D 266117 CDS YP_644159.1 108804222 4116050 1407869..1408570 1 NC_008148.1 KEGG: neu:NE2324 ribonuclease III (RNAse III) protein; TIGRFAM: Ribonuclease III; PFAM: ribonuclease III double-stranded RNA binding; RNAse III 1408570 4116050 Rxyl_1384 Rubrobacter xylanophilus DSM 9941 RNAse III YP_644159.1 1407869 D 266117 CDS YP_644160.1 108804223 4116051 1408677..1411952 1 NC_008148.1 PFAM: SMC protein-like; KEGG: sth:STH1455 putative chromosome segregation SMC protein; SMC protein-like protein 1411952 4116051 Rxyl_1385 Rubrobacter xylanophilus DSM 9941 SMC protein-like protein YP_644160.1 1408677 D 266117 CDS YP_644161.1 108804224 4116464 1411973..1413019 1 NC_008148.1 KEGG: sth:STH1457 signal recognition particle; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase; signal recognition particle-docking protein FtsY 1413019 4116464 Rxyl_1386 Rubrobacter xylanophilus DSM 9941 signal recognition particle-docking protein FtsY YP_644161.1 1411973 D 266117 CDS YP_644162.1 108804225 4116465 1413022..1414353 1 NC_008148.1 KEGG: sth:STH1465 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G-domain Signal peptide binding (SRP54) M-domain; SMART: ATPase; signal recognition particle subunit FFH/SRP54 (srp54) 1414353 4116465 Rxyl_1387 Rubrobacter xylanophilus DSM 9941 signal recognition particle subunit FFH/SRP54 (srp54) YP_644162.1 1413022 D 266117 CDS YP_644163.1 108804226 4116466 1414383..1414640 1 NC_008148.1 PFAM: ribosomal protein S16; KEGG: gka:GK1197 30S ribosomal protein S16; 30S ribosomal protein S16 1414640 4116466 Rxyl_1388 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S16 YP_644163.1 1414383 D 266117 CDS YP_644164.1 108804227 4116467 1414665..1414886 1 NC_008148.1 KEGG: sth:STH1467 hypothetical protein; RNA-binding protein 1414886 4116467 Rxyl_1389 Rubrobacter xylanophilus DSM 9941 RNA-binding protein YP_644164.1 1414665 D 266117 CDS YP_644165.1 108804228 4116468 1414894..1415385 1 NC_008148.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein PRC-barrel; KEGG: sth:STH1469 16S rRNA processing protein; 16S rRNA processing protein RimM 1415385 4116468 Rxyl_1390 Rubrobacter xylanophilus DSM 9941 16S rRNA processing protein RimM YP_644165.1 1414894 D 266117 CDS YP_644166.1 108804229 4116469 1415394..1416071 1 NC_008148.1 KEGG: rpa:RPA0242 putative tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (Guanine37-N(1)-) methyltransferase 1416071 4116469 Rxyl_1391 Rubrobacter xylanophilus DSM 9941 tRNA (Guanine37-N(1)-) methyltransferase YP_644166.1 1415394 D 266117 CDS YP_644167.1 108804230 4116470 1416193..1416522 1 NC_008148.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1416522 rplS 4116470 rplS Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L19 YP_644167.1 1416193 D 266117 CDS YP_644168.1 108804231 4116471 1416531..1417145 1 NC_008148.1 PFAM: ribonuclease HII/HIII; KEGG: mbo:Mb2926c probable ribonuclease HII protein RnhB (RNase HII); RNase HII 1417145 4116471 Rxyl_1393 Rubrobacter xylanophilus DSM 9941 RNase HII YP_644168.1 1416531 D 266117 CDS YP_644169.1 108804232 4116472 1417622..1419127 1 NC_008148.1 KEGG: ttj:TTHA0201 Mg(2+) chelatase family protein; TIGRFAM: Mg chelatase-related protein; PFAM: magnesium chelatase, ChlI subunit; SMART: ATPase; Mg chelatase-like protein 1419127 4116472 Rxyl_1395 Rubrobacter xylanophilus DSM 9941 Mg chelatase-like protein YP_644169.1 1417622 D 266117 CDS YP_644170.1 108804233 4116473 1419111..1420217 1 NC_008148.1 TIGRFAM: DNA processing protein DprA, putative; PFAM: SMF protein; KEGG: gme:Gmet_0890 smf protein; DNA processing protein DprA 1420217 4116473 Rxyl_1396 Rubrobacter xylanophilus DSM 9941 DNA processing protein DprA YP_644170.1 1419111 D 266117 CDS YP_644171.1 108804234 4116474 1420214..1421008 1 NC_008148.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sco:SCO5621 RNA polymerase sigma factor WhiG; RNA polymerase sigma-28 subunit 1421008 4116474 Rxyl_1397 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_644171.1 1420214 D 266117 CDS YP_644172.1 108804235 4116475 1421168..1422088 1 NC_008148.1 PFAM: ribosomal protein S2; KEGG: tfu:Tfu_0676 ribosomal protein S2, bacterial and organelle form; 30S ribosomal protein S2P 1422088 4116475 Rxyl_1398 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S2P YP_644172.1 1421168 D 266117 CDS YP_644173.1 108804236 4116476 1422060..1422683 1 NC_008148.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated elongation factor Ts; KEGG: chy:CHY_1786 elongation factor Ts; translation elongation factor Ts (EF-Ts) 1422683 4116476 Rxyl_1399 Rubrobacter xylanophilus DSM 9941 translation elongation factor Ts (EF-Ts) YP_644173.1 1422060 D 266117 CDS YP_644174.1 108804237 4116477 1422702..1423469 1 NC_008148.1 TIGRFAM: Uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: gka:GK1251 uridylate kinase; uridylate kinase 1423469 4116477 Rxyl_1400 Rubrobacter xylanophilus DSM 9941 uridylate kinase YP_644174.1 1422702 D 266117 CDS YP_644175.1 108804238 4116478 1423494..1424054 1 NC_008148.1 PFAM: ribosome recycling factor; KEGG: sth:STH1494 ribosome recycling factor; ribosome recycling factor 1424054 4116478 Rxyl_1401 Rubrobacter xylanophilus DSM 9941 ribosome recycling factor YP_644175.1 1423494 D 266117 CDS YP_644176.1 108804239 4116479 1424141..1424809 1 NC_008148.1 KEGG: mta:Moth_1038 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 1424809 4116479 Rxyl_1402 Rubrobacter xylanophilus DSM 9941 undecaprenyl pyrophosphate synthetase YP_644176.1 1424141 D 266117 CDS YP_644177.1 108804240 4116480 1424821..1425585 1 NC_008148.1 PFAM: phosphatidate cytidylyltransferase; KEGG: mta:Moth_1039 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1425585 4116480 Rxyl_1403 Rubrobacter xylanophilus DSM 9941 phosphatidate cytidylyltransferase YP_644177.1 1424821 D 266117 CDS YP_644178.1 108804241 4116481 1425582..1426715 1 NC_008148.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1426715 4116481 Rxyl_1404 Rubrobacter xylanophilus DSM 9941 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_644178.1 1425582 D 266117 CDS YP_644179.1 108804242 4116482 1426712..1427749 1 NC_008148.1 TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: PDZ/DHR/GLGF peptidase M50; KEGG: tte:TTE1401 predicted membrane-associated Zn-dependent protease 1; peptidase M50 membrane-associated zinc metallopeptidase 1427749 4116482 Rxyl_1405 Rubrobacter xylanophilus DSM 9941 peptidase M50 membrane-associated zinc metallopeptidase YP_644179.1 1426712 D 266117 CDS YP_644180.1 108804243 4116483 1427782..1428855 1 NC_008148.1 KEGG: fnu:FN0478 gcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG protein; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1428855 4116483 Rxyl_1406 Rubrobacter xylanophilus DSM 9941 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_644180.1 1427782 D 266117 CDS YP_644181.1 108804244 4117263 1428933..1429526 1 NC_008148.1 PFAM: cyclase/dehydrase; KEGG: eba:ebA2139 hypothetical protein; cyclase/dehydrase 1429526 4117263 Rxyl_1407 Rubrobacter xylanophilus DSM 9941 cyclase/dehydrase YP_644181.1 1428933 D 266117 CDS YP_644182.1 108804245 4117264 complement(1429523..1430476) 1 NC_008148.1 TIGRFAM: ribonuclease BN, putative; PFAM: ribonuclease BN; KEGG: pae:PA2751 hypothetical protein; ribonuclease BN 1430476 4117264 Rxyl_1408 Rubrobacter xylanophilus DSM 9941 ribonuclease BN YP_644182.1 1429523 R 266117 CDS YP_644183.1 108804246 4117265 1430645..1431103 1 NC_008148.1 PFAM: protein of unknown function DUF150; KEGG: mta:Moth_1046 protein of unknown function DUF150; hypothetical protein 1431103 4117265 Rxyl_1409 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644183.1 1430645 D 266117 CDS YP_644184.1 108804247 4117266 1431100..1432245 1 NC_008148.1 KEGG: chy:CHY_1769 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 KH, type 2 KH, type 1 NusA-like; SMART: KH; NusA antitermination factor 1432245 4117266 Rxyl_1410 Rubrobacter xylanophilus DSM 9941 NusA antitermination factor YP_644184.1 1431100 D 266117 CDS YP_644185.1 108804248 4117267 1432238..1434307 1 NC_008148.1 TIGRFAM: translation initiation factor IF-2 Small GTP-binding protein domain; PFAM: protein synthesis factor, GTP-binding GTP-binding protein, HSR1-related elongation factor Tu, domain 2 translation initiation factor IF-2-like; KEGG: tte:TTE1393 translation initiation factor IF-2; translation initiation factor 2 1434307 4117267 Rxyl_1411 Rubrobacter xylanophilus DSM 9941 translation initiation factor 2 YP_644185.1 1432238 D 266117 CDS YP_644186.1 108804249 4117268 1434332..1434613 1 NC_008148.1 PFAM: protein of unknown function DUF503; KEGG: chy:CHY_2676 hypothetical protein; hypothetical protein 1434613 4117268 Rxyl_1412 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644186.1 1434332 D 266117 CDS YP_644187.1 108804250 4117269 1434610..1434978 1 NC_008148.1 PFAM: ribosome-binding factor A; KEGG: gme:Gmet_1587 ribosome-binding factor A; ribosome-binding factor A 1434978 4117269 Rxyl_1413 Rubrobacter xylanophilus DSM 9941 ribosome-binding factor A YP_644187.1 1434610 D 266117 CDS YP_644188.1 108804251 4117270 1434950..1435918 1 NC_008148.1 PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: tth:TTC1886 exopolyphosphatase family protein; phosphoesterase, RecJ-like protein 1435918 4117270 Rxyl_1414 Rubrobacter xylanophilus DSM 9941 phosphoesterase, RecJ-like protein YP_644188.1 1434950 D 266117 CDS YP_644189.1 108804252 4117271 1435993..1436790 1 NC_008148.1 KEGG: bpm:BURPS1710b_1917 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB-like; tRNA pseudouridine synthase B 1436790 4117271 Rxyl_1415 Rubrobacter xylanophilus DSM 9941 tRNA pseudouridine synthase B YP_644189.1 1435993 D 266117 CDS YP_644190.1 108804253 4117272 1436778..1437677 1 NC_008148.1 TIGRFAM: riboflavin biosynthesis protein RibF Cytidyltransferase-related; PFAM: Riboflavin kinase / FAD synthetase; KEGG: fra:Francci3_3557 riboflavin biosynthesis protein RibF; riboflavin kinase/FMN adenylyltransferase 1437677 4117272 Rxyl_1416 Rubrobacter xylanophilus DSM 9941 riboflavin kinase/FMN adenylyltransferase YP_644190.1 1436778 D 266117 CDS YP_644191.1 108804254 4117273 1437761..1438027 1 NC_008148.1 PFAM: ribosomal protein S15; KEGG: blo:BL1545a 30S ribosomal protein S15; 30S ribosomal protein S15 1438027 4117273 Rxyl_1417 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S15 YP_644191.1 1437761 D 266117 CDS YP_644192.1 108804255 4117274 1438068..1440128 1 NC_008148.1 KEGG: gka:GK1269 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); PFAM: 3' exoribonuclease RNA binding S1 KH, type 1; SMART: KH; polynucleotide phosphorylase/polyadenylase 1440128 4117274 Rxyl_1418 Rubrobacter xylanophilus DSM 9941 polynucleotide phosphorylase/polyadenylase YP_644192.1 1438068 D 266117 CDS YP_644193.1 108804256 4117275 1440130..1441392 1 NC_008148.1 PFAM: peptidase M16-like; KEGG: mta:Moth_1059 peptidase M16-like; peptidase M16-like protein 1441392 4117275 Rxyl_1419 Rubrobacter xylanophilus DSM 9941 peptidase M16-like protein YP_644193.1 1440130 D 266117 CDS YP_644194.1 108804257 4117276 1441471..1443114 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: sth:STH1556 Zn-dependent hydrolase beta-lactamase superfamily; hypothetical protein 1443114 4117276 Rxyl_1420 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644194.1 1441471 D 266117 CDS YP_644195.1 108804258 4117277 1443181..1445391 1 NC_008148.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase; KEGG: tte:TTE1378 DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division protein FtsK 1445391 4117277 Rxyl_1421 Rubrobacter xylanophilus DSM 9941 cell division protein FtsK YP_644195.1 1443181 D 266117 CDS YP_644196.1 108804259 4117278 1445407..1446321 1 NC_008148.1 KEGG: cya:CYA_0772 hypothetical protein; hypothetical protein 1446321 4117278 Rxyl_1422 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644196.1 1445407 D 266117 CDS YP_644197.1 108804260 4117279 1446437..1447471 1 NC_008148.1 KEGG: chy:CHY_1166 RecA protein; TIGRFAM: recA protein; PFAM: RecA; SMART: ATPase; recA protein 1447471 4117279 Rxyl_1423 Rubrobacter xylanophilus DSM 9941 recA protein YP_644197.1 1446437 D 266117 CDS YP_644198.1 108804261 4117280 1447484..1448107 1 NC_008148.1 PFAM: regulatory protein RecX; KEGG: sru:SRU_2134 regulatory protein RecX; regulatory protein RecX 1448107 4117280 Rxyl_1424 Rubrobacter xylanophilus DSM 9941 regulatory protein RecX YP_644198.1 1447484 D 266117 CDS YP_644199.1 108804262 4117281 1448171..1449715 1 NC_008148.1 KEGG: chy:CHY_1168 HDIG/KH domain protein; TIGRFAM: uncharacterized domain HDIG; PFAM: KH, type 1 metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region KH; metal dependent phosphohydrolase 1449715 4117281 Rxyl_1425 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_644199.1 1448171 D 266117 CDS YP_644200.1 108804263 4117224 1449723..1450631 1 NC_008148.1 hypothetical protein 1450631 4117224 Rxyl_1426 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644200.1 1449723 D 266117 CDS YP_644201.1 108804264 4117225 1450618..1451955 1 NC_008148.1 PFAM: protein of unknown function UPF0004 Radical SAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: cjk:jk1114 2-methylthioadenine synthetase; tRNA-i(6)A37 thiotransferase MiaB 1451955 4117225 Rxyl_1427 Rubrobacter xylanophilus DSM 9941 tRNA-i(6)A37 thiotransferase MiaB YP_644201.1 1450618 D 266117 CDS YP_644202.1 108804265 4117226 1451969..1452844 1 NC_008148.1 PFAM: tRNA isopentenyltransferase; KEGG: tfu:Tfu_0815 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA isopentenyltransferase 1452844 4117226 Rxyl_1428 Rubrobacter xylanophilus DSM 9941 tRNA isopentenyltransferase YP_644202.1 1451969 D 266117 CDS YP_644203.1 108804266 4117227 1452841..1454139 1 NC_008148.1 PFAM: GTP-binding protein, HSR1-related; KEGG: nfa:nfa38280 putative GTP-binding protein; HSR1-like GTP-binding protein 1454139 4117227 Rxyl_1429 Rubrobacter xylanophilus DSM 9941 HSR1-like GTP-binding protein YP_644203.1 1452841 D 266117 CDS YP_644204.1 108804267 4117228 1454123..1454878 1 NC_008148.1 PFAM: bifunctional deaminase-reductase-like; KEGG: mpa:MAP1425c hypothetical protein; bifunctional deaminase-reductase-like protein 1454878 4117228 Rxyl_1430 Rubrobacter xylanophilus DSM 9941 bifunctional deaminase-reductase-like protein YP_644204.1 1454123 D 266117 CDS YP_644205.1 108804268 4117229 complement(1454913..1455842) 1 NC_008148.1 PFAM: phage integrase phage integrase-like SAM-like; KEGG: mca:MCA0396 tyrosine recombinase XerD; phage integrase 1455842 4117229 Rxyl_1431 Rubrobacter xylanophilus DSM 9941 phage integrase YP_644205.1 1454913 R 266117 CDS YP_644206.1 108804269 4117230 complement(1455823..1456380) 1 NC_008148.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1456380 4117230 Rxyl_1432 Rubrobacter xylanophilus DSM 9941 adenine phosphoribosyltransferase YP_644206.1 1455823 R 266117 CDS YP_644207.1 108804270 4117231 complement(1456377..1457066) 1 NC_008148.1 PFAM: regulatory protein, MerR; KEGG: cjk:jk0904 putative transcriptional regulator (MerR family); MerR family transcriptional regulator 1457066 4117231 Rxyl_1433 Rubrobacter xylanophilus DSM 9941 MerR family transcriptional regulator YP_644207.1 1456377 R 266117 CDS YP_644208.1 108804271 4117232 complement(1457102..1457560) 1 NC_008148.1 PFAM: Forkhead-associated; KEGG: sco:SCO1384 hypothetical protein; FHA domain-containing protein 1457560 4117232 Rxyl_1434 Rubrobacter xylanophilus DSM 9941 FHA domain-containing protein YP_644208.1 1457102 R 266117 CDS YP_644209.1 108804272 4117233 complement(1457557..1457823) 1 NC_008148.1 KEGG: sco:SCO4184 aerial mycelium formation; aerial mycelium formation protein 1457823 4117233 Rxyl_1435 Rubrobacter xylanophilus DSM 9941 aerial mycelium formation protein YP_644209.1 1457557 R 266117 CDS YP_644210.1 108804273 4117234 complement(1457865..1460366) 1 NC_008148.1 PFAM: transferase hexapeptide repeat Nucleotidyl transferase phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: fra:Francci3_1463 nucleotidyl transferase; nucleotidyl transferase 1460366 4117234 Rxyl_1436 Rubrobacter xylanophilus DSM 9941 nucleotidyl transferase YP_644210.1 1457865 R 266117 CDS YP_644211.1 108804274 4117235 complement(1460368..1460871) 1 NC_008148.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pac:PPA1079 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase; CDP-alcohol phosphatidyltransferase 1460871 4117235 Rxyl_1437 Rubrobacter xylanophilus DSM 9941 CDP-alcohol phosphatidyltransferase YP_644211.1 1460368 R 266117 CDS YP_644212.1 108804275 4117236 complement(1460882..1462195) 1 NC_008148.1 KEGG: tfu:Tfu_1210 small GTP-binding protein domain:GTP-binding; TIGRFAM: Small GTP-binding protein domain GTP-binding; PFAM: GTP-binding protein, HSR1-related; SMART: ATPase; small GTP-binding protein domain-containing protein 1462195 4117236 Rxyl_1438 Rubrobacter xylanophilus DSM 9941 small GTP-binding protein domain-containing protein YP_644212.1 1460882 R 266117 CDS YP_644213.1 108804276 4117237 complement(1462185..1462793) 1 NC_008148.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ttj:TTHA1348 1-acyl-sn-glycerol-3-phosphate acyltransferase; phospholipid/glycerol acyltransferase 1462793 4117237 Rxyl_1439 Rubrobacter xylanophilus DSM 9941 phospholipid/glycerol acyltransferase YP_644213.1 1462185 R 266117 CDS YP_644214.1 108804277 4117238 complement(1462795..1463469) 1 NC_008148.1 KEGG: ade:Adeh_1515 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 1463469 4117238 Rxyl_1440 Rubrobacter xylanophilus DSM 9941 cytidylate kinase YP_644214.1 1462795 R 266117 CDS YP_644215.1 108804278 4117239 complement(1463496..1464839) 1 NC_008148.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1464839 4117239 Rxyl_1441 Rubrobacter xylanophilus DSM 9941 3-phosphoshikimate 1-carboxyvinyltransferase YP_644215.1 1463496 R 266117 CDS YP_644216.1 108804279 4117240 complement(1464836..1465546) 1 NC_008148.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: ttj:TTHA0219 ribosomal large subunit pseudouridine synthase B; ribosomal large subunit pseudouridine synthase B 1465546 4117240 Rxyl_1442 Rubrobacter xylanophilus DSM 9941 ribosomal large subunit pseudouridine synthase B YP_644216.1 1464836 R 266117 CDS YP_644217.1 108804280 4117241 complement(1465543..1466100) 1 NC_008148.1 PFAM: chromosome segregation and condensation protein ScpB; KEGG: fra:Francci3_1453 putative transcriptional regulator; putative transcriptional regulator 1466100 4117241 Rxyl_1443 Rubrobacter xylanophilus DSM 9941 putative transcriptional regulator YP_644217.1 1465543 R 266117 CDS YP_644218.1 108804281 4117242 complement(1466097..1466804) 1 NC_008148.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: sru:SRU_1770 segregation and condensation protein A; condensin subunit ScpA 1466804 4117242 Rxyl_1444 Rubrobacter xylanophilus DSM 9941 condensin subunit ScpA YP_644218.1 1466097 R 266117 CDS YP_644219.1 108804282 4117243 complement(1466801..1467934) 1 NC_008148.1 TIGRFAM: alanine dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding alanine dehydrogenase/PNT-like; KEGG: mag:amb4487 alanine dehydrogenase; L-alanine dehydrogenase 1467934 4117243 Rxyl_1445 Rubrobacter xylanophilus DSM 9941 L-alanine dehydrogenase YP_644219.1 1466801 R 266117 CDS YP_644220.1 108804283 4116795 complement(1467931..1468944) 1 NC_008148.1 KEGG: tfu:Tfu_1772 hypothetical protein; hypothetical protein 1468944 4116795 Rxyl_1446 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644220.1 1467931 R 266117 CDS YP_644221.1 108804284 4116796 complement(1468948..1469469) 1 NC_008148.1 hypothetical protein 1469469 4116796 Rxyl_1447 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644221.1 1468948 R 266117 CDS YP_644222.1 108804285 4116797 complement(1469471..1471126) 1 NC_008148.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1471126 pyrG 4116797 pyrG Rubrobacter xylanophilus DSM 9941 CTP synthetase YP_644222.1 1469471 R 266117 CDS YP_644223.1 108804286 4116798 complement(1471128..1471904) 1 NC_008148.1 KEGG: tfu:Tfu_2028 hypothetical protein; hypothetical protein 1471904 4116798 Rxyl_1449 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644223.1 1471128 R 266117 CDS YP_644224.1 108804287 4116799 complement(1471898..1472596) 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_3054 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein 1472596 4116799 Rxyl_1450 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_644224.1 1471898 R 266117 CDS YP_644225.1 108804288 4116800 complement(1472608..1473408) 1 NC_008148.1 KEGG: chy:CHY_1976 hypothetical protein; hypothetical protein 1473408 4116800 Rxyl_1451 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644225.1 1472608 R 266117 CDS YP_644226.1 108804289 4116801 complement(1473412..1474584) 1 NC_008148.1 PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1305 hypothetical protein; thiamin pyrophosphokinase, catalytic region 1474584 4116801 Rxyl_1452 Rubrobacter xylanophilus DSM 9941 thiamin pyrophosphokinase, catalytic region YP_644226.1 1473412 R 266117 CDS YP_644227.1 108804290 4116802 complement(1474581..1476254) 1 NC_008148.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC protein-like; KEGG: mta:Moth_1507 DNA repair protein RecN; DNA repair protein RecN 1476254 4116802 Rxyl_1453 Rubrobacter xylanophilus DSM 9941 DNA repair protein RecN YP_644227.1 1474581 R 266117 CDS YP_644228.1 108804291 4116803 complement(1476254..1477075) 1 NC_008148.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pca:Pcar_2327 ATP-NAD kinase; NAD(+) kinase 1477075 4116803 Rxyl_1454 Rubrobacter xylanophilus DSM 9941 NAD(+) kinase YP_644228.1 1476254 R 266117 CDS YP_644229.1 108804292 4116804 complement(1477059..1477856) 1 NC_008148.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ RNA-binding S4; KEGG: tfu:Tfu_2034 hemolysin A; hemolysin A 1477856 4116804 Rxyl_1455 Rubrobacter xylanophilus DSM 9941 hemolysin A YP_644229.1 1477059 R 266117 CDS YP_644230.1 108804293 4116805 complement(1477863..1478762) 1 NC_008148.1 PFAM: Polyprenyl synthetase; KEGG: pmi:PMT9312_1081 polyprenyl synthetase; farnesyl-diphosphate synthase 1478762 4116805 Rxyl_1456 Rubrobacter xylanophilus DSM 9941 farnesyl-diphosphate synthase YP_644230.1 1477863 R 266117 CDS YP_644231.1 108804294 4116806 complement(1478746..1479165) 1 NC_008148.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: sth:STH1849 transcription termination factor; NusB antitermination factor 1479165 4116806 Rxyl_1457 Rubrobacter xylanophilus DSM 9941 NusB antitermination factor YP_644231.1 1478746 R 266117 CDS YP_644232.1 108804295 4116807 complement(1479167..1479724) 1 NC_008148.1 TIGRFAM: translation elongation factor P; PFAM: elongation factor P/YeiP Elongation factor, KOW-like; KEGG: tte:TTE1281 translation initiation factor eIF-5A; translation elongation factor P (EF-P) 1479724 4116807 Rxyl_1458 Rubrobacter xylanophilus DSM 9941 translation elongation factor P (EF-P) YP_644232.1 1479167 R 266117 CDS YP_644233.1 108804296 4116808 complement(1479847..1480905) 1 NC_008148.1 PFAM: 3-dehydroquinate synthase; KEGG: sth:STH1948 3-dehydroquinate synthase; 3-dehydroquinate synthase 1480905 4116808 Rxyl_1459 Rubrobacter xylanophilus DSM 9941 3-dehydroquinate synthase YP_644233.1 1479847 R 266117 CDS YP_644234.1 108804297 4116809 complement(1480908..1481414) 1 NC_008148.1 PFAM: shikimate kinase; KEGG: det:DET0464 shikimate kinase; shikimate kinase 1481414 4116809 Rxyl_1460 Rubrobacter xylanophilus DSM 9941 shikimate kinase YP_644234.1 1480908 R 266117 CDS YP_644235.1 108804298 4116810 complement(1481428..1482597) 1 NC_008148.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1482597 4116810 Rxyl_1461 Rubrobacter xylanophilus DSM 9941 chorismate synthase YP_644235.1 1481428 R 266117 CDS YP_644236.1 108804299 4116811 complement(1482631..1483158) 1 NC_008148.1 hypothetical protein 1483158 4116811 Rxyl_1462 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644236.1 1482631 R 266117 CDS YP_644237.1 108804300 4116812 complement(1483148..1483768) 1 NC_008148.1 KEGG: gme:Gmet_0973 pilus assembly protein, PilO; Tfp pilus assembly protein PilO-like protein 1483768 4116812 Rxyl_1463 Rubrobacter xylanophilus DSM 9941 Tfp pilus assembly protein PilO-like protein YP_644237.1 1483148 R 266117 CDS YP_644238.1 108804301 4116813 complement(1483769..1484446) 1 NC_008148.1 PFAM: Fimbrial assembly; fimbrial assembly 1484446 4116813 Rxyl_1464 Rubrobacter xylanophilus DSM 9941 fimbrial assembly YP_644238.1 1483769 R 266117 CDS YP_644239.1 108804302 4116131 complement(1484443..1485582) 1 NC_008148.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: tth:TTC1013 pilus-associated protein pilM; type IV pilus assembly protein PilM 1485582 4116131 Rxyl_1465 Rubrobacter xylanophilus DSM 9941 type IV pilus assembly protein PilM YP_644239.1 1484443 R 266117 CDS YP_644240.1 108804303 4116132 complement(1485611..1486321) 1 NC_008148.1 KEGG: reu:Reut_A1128 transferase hexapeptide repeat; hypothetical protein 1486321 4116132 Rxyl_1466 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644240.1 1485611 R 266117 CDS YP_644241.1 108804304 4116133 complement(1486382..1487302) 1 NC_008148.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase-like; KEGG: gsu:GSU0130 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 1487302 4116133 Rxyl_1467 Rubrobacter xylanophilus DSM 9941 methionyl-tRNA formyltransferase YP_644241.1 1486382 R 266117 CDS YP_644242.1 108804305 4116134 complement(1487314..1487808) 1 NC_008148.1 PFAM: formylmethionine deformylase; KEGG: cef:CE1720 putative polypeptide deformylase; peptide deformylase 1487808 4116134 Rxyl_1468 Rubrobacter xylanophilus DSM 9941 peptide deformylase YP_644242.1 1487314 R 266117 CDS YP_644243.1 108804306 4116135 complement(1487812..1489998) 1 NC_008148.1 TIGRFAM: primosomal protein N'; KEGG: pca:Pcar_0764 primosomal protein n'; primosomal protein N' 1489998 4116135 Rxyl_1469 Rubrobacter xylanophilus DSM 9941 primosomal protein N' YP_644243.1 1487812 R 266117 CDS YP_644244.1 108804307 4116136 complement(1490006..1491244) 1 NC_008148.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1491244 4116136 Rxyl_1470 Rubrobacter xylanophilus DSM 9941 S-adenosylmethionine synthetase YP_644244.1 1490006 R 266117 CDS YP_644245.1 108804308 4116137 complement(1491198..1492334) 1 NC_008148.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein-like; KEGG: mta:Moth_0893 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1492334 4116137 Rxyl_1471 Rubrobacter xylanophilus DSM 9941 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_644245.1 1491198 R 266117 CDS YP_644246.1 108804309 4116138 complement(1492331..1492651) 1 NC_008148.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: tfu:Tfu_1063 RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 1492651 4116138 Rxyl_1472 Rubrobacter xylanophilus DSM 9941 DNA-directed RNA polymerase subunit omega YP_644246.1 1492331 R 266117 CDS YP_644247.1 108804310 4116139 complement(1492645..1493220) 1 NC_008148.1 KEGG: ava:Ava_1475 guanylate kinase; PFAM: guanylate kinase; SMART: Guanylate kinase/L-type calcium channel region; guanylate kinase 1493220 4116139 Rxyl_1473 Rubrobacter xylanophilus DSM 9941 guanylate kinase YP_644247.1 1492645 R 266117 CDS YP_644248.1 108804311 4116140 complement(1493202..1493528) 1 NC_008148.1 KEGG: cef:CE1727 hypothetical protein; hypothetical protein 1493528 4116140 Rxyl_1474 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644248.1 1493202 R 266117 CDS YP_644249.1 108804312 4116141 complement(1493544..1494458) 1 NC_008148.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: gme:Gmet_1841 dihydroorotate dehydrogenase 1; dihydroorotate oxidase B, catalytic subunit 1494458 4116141 Rxyl_1475 Rubrobacter xylanophilus DSM 9941 dihydroorotate oxidase B, catalytic subunit YP_644249.1 1493544 R 266117 CDS YP_644250.1 108804313 4116142 complement(1494452..1495177) 1 NC_008148.1 PFAM: oxidoreductase FAD/NAD(P)-binding; KEGG: tte:TTE1531 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; dihydroorotate oxidase B, electron transfer subunit 1495177 4116142 Rxyl_1476 Rubrobacter xylanophilus DSM 9941 dihydroorotate oxidase B, electron transfer subunit YP_644250.1 1494452 R 266117 CDS YP_644251.1 108804314 4116143 complement(1495174..1498338) 1 NC_008148.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase-like, ATP-grasp protein of unknown function DUF201 Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain, oligomerisation Carbamoyl-phosphate synthetase large chain-like MGS-like; KEGG: afu:AF1274 carbamoyl-phosphate synthase large chain; carbamoyl-phosphate synthase large subunit 1498338 4116143 Rxyl_1477 Rubrobacter xylanophilus DSM 9941 carbamoyl-phosphate synthase large subunit YP_644251.1 1495174 R 266117 CDS YP_644252.1 108804315 4116144 complement(1498347..1499456) 1 NC_008148.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I Carbamoyl-phosphate synthase, small chain; KEGG: plt:Plut_0156 carbamoyl-phosphate synthase small subunit; carbamoyl-phosphate synthase small subunit 1499456 4116144 Rxyl_1478 Rubrobacter xylanophilus DSM 9941 carbamoyl-phosphate synthase small subunit YP_644252.1 1498347 R 266117 CDS YP_644253.1 108804316 4116145 complement(1499440..1500750) 1 NC_008148.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: sth:STH1258 dihydroorotase; dihydroorotase 1500750 4116145 Rxyl_1479 Rubrobacter xylanophilus DSM 9941 dihydroorotase YP_644253.1 1499440 R 266117 CDS YP_644254.1 108804317 4116146 complement(1500747..1501664) 1 NC_008148.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: ccr:CC2443 aspartate carbamoyltransferase; aspartate carbamoyltransferase 1501664 4116146 Rxyl_1480 Rubrobacter xylanophilus DSM 9941 aspartate carbamoyltransferase YP_644254.1 1500747 R 266117 CDS YP_644255.1 108804318 4116147 complement(1501654..1502208) 1 NC_008148.1 PFAM: phosphoribosyltransferase; KEGG: deh:cbdb_A1112 pyrimidine operon regulatory protein; uracil phosphoribosyltransferase 1502208 4116147 Rxyl_1481 Rubrobacter xylanophilus DSM 9941 uracil phosphoribosyltransferase YP_644255.1 1501654 R 266117 CDS YP_644256.1 108804319 4116148 complement(1502280..1503197) 1 NC_008148.1 TIGRFAM: Pseudouridine synthase, RluD; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: nar:Saro_3046 pseudouridine synthase, RluD; ribosomal large subunit pseudouridine synthase D 1503197 4116148 Rxyl_1482 Rubrobacter xylanophilus DSM 9941 ribosomal large subunit pseudouridine synthase D YP_644256.1 1502280 R 266117 CDS YP_644257.1 108804320 4116149 complement(1503216..1504088) 1 NC_008148.1 PFAM: DivIVA; KEGG: sth:STH1230 cell-division initiation protein; hypothetical protein 1504088 4116149 Rxyl_1483 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644257.1 1503216 R 266117 CDS YP_644258.1 108804321 4116150 complement(1504093..1504437) 1 NC_008148.1 PFAM: protein of unknown function YGGT; KEGG: mta:Moth_0861 protein of unknown function YGGT; hypothetical protein 1504437 4116150 Rxyl_1484 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644258.1 1504093 R 266117 CDS YP_644259.1 108804322 4117009 complement(1504434..1505222) 1 NC_008148.1 KEGG: syn:slr0661 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; pyrroline-5-carboxylate reductase 1505222 4117009 Rxyl_1485 Rubrobacter xylanophilus DSM 9941 pyrroline-5-carboxylate reductase YP_644259.1 1504434 R 266117 CDS YP_644260.1 108804323 4117010 complement(1505219..1505779) 1 NC_008148.1 PFAM: protein of unknown function DUF552; KEGG: tfu:Tfu_1116 hypothetical protein; hypothetical protein 1505779 4117010 Rxyl_1486 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644260.1 1505219 R 266117 CDS YP_644261.1 108804324 4117011 complement(1505769..1506491) 1 NC_008148.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase-like; KEGG: bha:BH2550 hypothetical protein; hypothetical protein 1506491 4117011 Rxyl_1487 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644261.1 1505769 R 266117 CDS YP_644262.1 108804325 4117012 complement(1506488..1507252) 1 NC_008148.1 PFAM: protein of unknown function DUF152; KEGG: ade:Adeh_2703 protein of unknown function DUF152; hypothetical protein 1507252 4117012 Rxyl_1488 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644262.1 1506488 R 266117 CDS YP_644263.1 108804326 4117013 complement(1507281..1508357) 1 NC_008148.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase Tubulin/FtsZ-like; KEGG: mta:Moth_0850 cell division protein FtsZ; cell division protein FtsZ 1508357 4117013 Rxyl_1489 Rubrobacter xylanophilus DSM 9941 cell division protein FtsZ YP_644263.1 1507281 R 266117 CDS YP_644264.1 108804327 4117014 complement(1508414..1509619) 1 NC_008148.1 PFAM: cell division protein FtsA; KEGG: tbd:Tbd_0124 cell division protein FtsA; cell division protein FtsA 1509619 4117014 Rxyl_1490 Rubrobacter xylanophilus DSM 9941 cell division protein FtsA YP_644264.1 1508414 R 266117 CDS YP_644265.1 108804328 4117015 complement(1509630..1510310) 1 NC_008148.1 PFAM: Polypeptide-transport-associated, FtsQ-type; cell division protein FtsQ 1510310 4117015 Rxyl_1491 Rubrobacter xylanophilus DSM 9941 cell division protein FtsQ YP_644265.1 1509630 R 266117 CDS YP_644266.1 108804329 4117016 complement(1510307..1511650) 1 NC_008148.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: gsu:GSU3068 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 1511650 4117016 Rxyl_1492 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylmuramate--L-alanine ligase YP_644266.1 1510307 R 266117 CDS YP_644267.1 108804330 4117017 complement(1511647..1512657) 1 NC_008148.1 KEGG: mca:MCA2429 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28 glycosyltransferase 28-like; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 1512657 4117017 Rxyl_1493 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase YP_644267.1 1511647 R 266117 CDS YP_644268.1 108804331 4117018 complement(1512650..1513798) 1 NC_008148.1 PFAM: cell cycle protein; KEGG: btk:BT9727_3653 stage V sporulation protein E; cell cycle protein 1513798 4117018 Rxyl_1494 Rubrobacter xylanophilus DSM 9941 cell cycle protein YP_644268.1 1512650 R 266117 CDS YP_644269.1 108804332 4117019 complement(1513795..1515117) 1 NC_008148.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: mta:Moth_0841 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 1515117 4117019 Rxyl_1495 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_644269.1 1513795 R 266117 CDS YP_644270.1 108804333 4117020 complement(1515114..1516106) 1 NC_008148.1 KEGG: gka:GK1117 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 1516106 4117020 Rxyl_1496 Rubrobacter xylanophilus DSM 9941 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_644270.1 1515114 R 266117 CDS YP_644271.1 108804334 4117021 complement(1516099..1517463) 1 NC_008148.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: sma:SAV6118 putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2 ,6-diaminopimelate-D-alanyl-D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1517463 4117021 Rxyl_1497 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_644271.1 1516099 R 266117 CDS YP_644272.1 108804335 4117022 complement(1517460..1519130) 1 NC_008148.1 PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: tfu:Tfu_1104 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 1519130 4117022 Rxyl_1498 Rubrobacter xylanophilus DSM 9941 peptidoglycan glycosyltransferase YP_644272.1 1517460 R 266117 CDS YP_644273.1 108804336 4117023 complement(1519156..1519572) 1 NC_008148.1 hypothetical protein 1519572 4117023 Rxyl_1499 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644273.1 1519156 R 266117 CDS YP_644274.1 108804337 4117024 complement(1519574..1520512) 1 NC_008148.1 PFAM: methyltransferase; KEGG: sth:STH1201 putative S-adenosylmethionine-dependent methyltransferase; methyltransferase 1520512 4117024 Rxyl_1500 Rubrobacter xylanophilus DSM 9941 methyltransferase YP_644274.1 1519574 R 266117 CDS YP_644275.1 108804338 4117025 complement(1520512..1520967) 1 NC_008148.1 PFAM: protein of unknown function UPF0040; KEGG: sha:SH1737 protein MraZ protein; hypothetical protein 1520967 4117025 Rxyl_1501 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644275.1 1520512 R 266117 CDS YP_644276.1 108804339 4117026 complement(1521426..1523177) 1 NC_008148.1 KEGG: mta:Moth_0623 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-type TOPRIM DNA primase catalytic core-like; SMART: Toprim subdomain; DNA primase 1523177 4117026 Rxyl_1502 Rubrobacter xylanophilus DSM 9941 DNA primase YP_644276.1 1521426 R 266117 CDS YP_644277.1 108804340 4117027 complement(1523189..1524145) 1 NC_008148.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 1524145 4117027 Rxyl_1503 Rubrobacter xylanophilus DSM 9941 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_644277.1 1523189 R 266117 CDS YP_644278.1 108804341 4117048 complement(1524142..1524888) 1 NC_008148.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: nfa:nfa14520 putative DNA repair protein; DNA repair protein RecO 1524888 4117048 Rxyl_1504 Rubrobacter xylanophilus DSM 9941 DNA repair protein RecO YP_644278.1 1524142 R 266117 CDS YP_644279.1 108804342 4117049 complement(1524869..1525576) 1 NC_008148.1 KEGG: tte:TTE0975 Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 1525576 4117049 Rxyl_1505 Rubrobacter xylanophilus DSM 9941 deoxyribose-phosphate aldolase YP_644279.1 1524869 R 266117 CDS YP_644280.1 108804343 4117050 complement(1525620..1526525) 1 NC_008148.1 TIGRFAM: Small GTP-binding protein domain GTP-binding GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related KH, type 2; KEGG: sth:STH534 Era family GTP-binding protein; GTP-binding protein Era 1526525 4117050 Rxyl_1506 Rubrobacter xylanophilus DSM 9941 GTP-binding protein Era YP_644280.1 1525620 R 266117 CDS YP_644281.1 108804344 4117051 complement(1526525..1526929) 1 NC_008148.1 TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sth:STH533 cytidine deaminase; cytidine deaminase 1526929 4117051 Rxyl_1507 Rubrobacter xylanophilus DSM 9941 cytidine deaminase YP_644281.1 1526525 R 266117 CDS YP_644282.1 108804345 4117052 complement(1526941..1527684) 1 NC_008148.1 PFAM: phosphoesterase, PA-phosphatase related diacylglycerol kinase; KEGG: tte:TTE0973 Diacylglycerol kinase; diacylglycerol kinase 1527684 4117052 Rxyl_1508 Rubrobacter xylanophilus DSM 9941 diacylglycerol kinase YP_644282.1 1526941 R 266117 CDS YP_644283.1 108804346 4117053 complement(1527674..1528081) 1 NC_008148.1 PFAM: protein of unknown function UPF0054; KEGG: pmu:PM1045 hypothetical HI0004; hypothetical protein 1528081 4117053 Rxyl_1509 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644283.1 1527674 R 266117 CDS YP_644284.1 108804347 4117054 complement(1528091..1530313) 1 NC_008148.1 KEGG: mta:Moth_0594 metal dependent phosphohydrolase; TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain metal-dependent phosphohydrolase, 7TM intracellular region metal-dependent phosphohydrolase, 7TM extracellular region; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1530313 4117054 Rxyl_1510 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_644284.1 1528091 R 266117 CDS YP_644285.1 108804348 4117055 complement(1530335..1531246) 1 NC_008148.1 PFAM: PhoH-like protein; KEGG: sth:STH529 phosphate starvation-induced protein; PhoH-like protein 1531246 4117055 Rxyl_1511 Rubrobacter xylanophilus DSM 9941 PhoH-like protein YP_644285.1 1530335 R 266117 CDS YP_644286.1 108804349 4117056 complement(1531322..1531765) 1 NC_008148.1 PFAM: GatB/Yqey; KEGG: gka:GK2496 hypothetical protein; hypothetical protein 1531765 4117056 Rxyl_1512 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644286.1 1531322 R 266117 CDS YP_644287.1 108804350 4117057 complement(1531762..1532490) 1 NC_008148.1 PFAM: protein of unknown function DUF558; KEGG: ade:Adeh_0247 hypothetical protein; hypothetical protein 1532490 4117057 Rxyl_1513 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644287.1 1531762 R 266117 CDS YP_644288.1 108804351 4117058 complement(1532515..1533642) 1 NC_008148.1 TIGRFAM: Chaperone DnaJ; PFAM: DnaJ central region heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: sth:STH505 heat shock protein, DnaJ; chaperone DnaJ 1533642 4117058 Rxyl_1514 Rubrobacter xylanophilus DSM 9941 chaperone DnaJ YP_644288.1 1532515 R 266117 CDS YP_644289.1 108804352 4117059 complement(1533648..1534676) 1 NC_008148.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: gka:GK2506 transcriptional repressor of class I heat shock genes; heat-inducible transcription repressor HrcA 1534676 4117059 Rxyl_1515 Rubrobacter xylanophilus DSM 9941 heat-inducible transcription repressor HrcA YP_644289.1 1533648 R 266117 CDS YP_644290.1 108804353 4117060 complement(1534710..1536512) 1 NC_008148.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1536512 4117060 Rxyl_1516 Rubrobacter xylanophilus DSM 9941 GTP-binding protein LepA YP_644290.1 1534710 R 266117 CDS YP_644291.1 108804354 4117061 1536594..1536848 1 NC_008148.1 PFAM: ribosomal protein S20; KEGG: ade:Adeh_2725 ribosomal protein S20; 30S ribosomal protein S20 1536848 4117061 Rxyl_1517 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S20 YP_644291.1 1536594 D 266117 CDS YP_644292.1 108804355 4117062 complement(1536858..1537778) 1 NC_008148.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: bld:BLi02748 similar to proteins; RBL00675; DNA polymerase III subunit delta 1537778 4117062 Rxyl_1518 Rubrobacter xylanophilus DSM 9941 DNA polymerase III subunit delta YP_644292.1 1536858 R 266117 CDS YP_644293.1 108804356 4117063 complement(1537794..1539389) 1 NC_008148.1 PFAM: ComEC/Rec2-related protein; KEGG: sth:STH473 ComE-like competence protein; ComEC/Rec2-like protein 1539389 4117063 Rxyl_1519 Rubrobacter xylanophilus DSM 9941 ComEC/Rec2-like protein YP_644293.1 1537794 R 266117 CDS YP_644294.1 108804357 4117064 complement(1539376..1539699) 1 NC_008148.1 KEGG: chy:CHY_0402 competence protein; TIGRFAM: Competence protein ComEA helix-hairpin-helix region; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; competence protein ComEA helix-hairpin-helix region 1539699 4117064 Rxyl_1520 Rubrobacter xylanophilus DSM 9941 competence protein ComEA helix-hairpin-helix region YP_644294.1 1539376 R 266117 CDS YP_644295.1 108804358 4117065 complement(1539947..1540342) 1 NC_008148.1 PFAM: Iojap-related protein; KEGG: mpa:MAP2243c hypothetical protein; Iojap-like protein 1540342 4117065 Rxyl_1521 Rubrobacter xylanophilus DSM 9941 Iojap-like protein YP_644295.1 1539947 R 266117 CDS YP_644296.1 108804359 4117066 complement(1540339..1540983) 1 NC_008148.1 KEGG: mta:Moth_0564 nicotinate-nucleotide adenylyltransferase-like; TIGRFAM: Cytidyltransferase-related Probable nicotinate-nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate-nucleotide adenylyltransferase 1540983 4117066 Rxyl_1522 Rubrobacter xylanophilus DSM 9941 nicotinate-nucleotide adenylyltransferase YP_644296.1 1540339 R 266117 CDS YP_644297.1 108804360 4117067 complement(1540993..1542228) 1 NC_008148.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1542228 obgE 4117067 obgE Rubrobacter xylanophilus DSM 9941 GTPase ObgE YP_644297.1 1540993 R 266117 CDS YP_644298.1 108804361 4116388 complement(1542260..1542520) 1 NC_008148.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1542520 rpmA 4116388 rpmA Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L27 YP_644298.1 1542260 R 266117 CDS YP_644299.1 108804362 4116389 complement(1542526..1542813) 1 NC_008148.1 PFAM: ribosomal protein L21; KEGG: aae:aq_1641a 50S ribosomal protein L21; 50S ribosomal protein L21 1542813 4116389 Rxyl_1525 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L21 YP_644299.1 1542526 R 266117 CDS YP_644300.1 108804363 4116390 complement(1542921..1544060) 1 NC_008148.1 PFAM: cell cycle protein; KEGG: tte:TTE0905 Bacterial cell division membrane protein; cell cycle protein 1544060 4116390 Rxyl_1526 Rubrobacter xylanophilus DSM 9941 cell cycle protein YP_644300.1 1542921 R 266117 CDS YP_644301.1 108804364 4116391 complement(1544057..1544578) 1 NC_008148.1 hypothetical protein 1544578 4116391 Rxyl_1527 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644301.1 1544057 R 266117 CDS YP_644302.1 108804365 4116392 complement(1544608..1545528) 1 NC_008148.1 PFAM: Rod shape-determining protein MreC; KEGG: ctc:CTC02073 rod shape-determining protein mreC; rod shape-determining protein MreC 1545528 4116392 Rxyl_1528 Rubrobacter xylanophilus DSM 9941 rod shape-determining protein MreC YP_644302.1 1544608 R 266117 CDS YP_644303.1 108804366 4116393 complement(1545532..1546560) 1 NC_008148.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1546560 4116393 Rxyl_1529 Rubrobacter xylanophilus DSM 9941 rod shape-determining protein MreB YP_644303.1 1545532 R 266117 CDS YP_644304.1 108804367 4116394 complement(1546603..1547286) 1 NC_008148.1 PFAM: DNA repair protein RadC; KEGG: mta:Moth_0536 DNA repair protein RadC; DNA repair protein RadC 1547286 4116394 Rxyl_1530 Rubrobacter xylanophilus DSM 9941 DNA repair protein RadC YP_644304.1 1546603 R 266117 CDS YP_644305.1 108804368 4116395 complement(1547311..1547883) 1 NC_008148.1 TIGRFAM: maf protein; PFAM: Maf-like protein; KEGG: sth:STH370 septum formation protein Maf; maf protein 1547883 4116395 Rxyl_1531 Rubrobacter xylanophilus DSM 9941 maf protein YP_644305.1 1547311 R 266117 CDS YP_644306.1 108804369 4116396 complement(1547888..1548289) 1 NC_008148.1 PFAM: nucleoside diphosphate kinase; KEGG: afu:AF0767 nucleoside diphosphate kinase (ndk); nucleoside diphosphate kinase 1548289 4116396 Rxyl_1532 Rubrobacter xylanophilus DSM 9941 nucleoside diphosphate kinase YP_644306.1 1547888 R 266117 CDS YP_644307.1 108804370 4116397 complement(1548324..1548821) 1 NC_008148.1 KEGG: ctc:CTC00666 hypothetical protein; hypothetical protein 1548821 4116397 Rxyl_1533 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644307.1 1548324 R 266117 CDS YP_644308.1 108804371 4116398 complement(1548909..1550138) 1 NC_008148.1 KEGG: ttj:TTHA0343 folyl-polyglutamate synthetase; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1550138 4116398 Rxyl_1534 Rubrobacter xylanophilus DSM 9941 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_644308.1 1548909 R 266117 CDS YP_644309.1 108804372 4116399 complement(1550139..1552700) 1 NC_008148.1 TIGRFAM: valyl-tRNA synthetase; KEGG: chy:CHY_0334 valyl-tRNA synthetase; valyl-tRNA synthetase 1552700 4116399 Rxyl_1535 Rubrobacter xylanophilus DSM 9941 valyl-tRNA synthetase YP_644309.1 1550139 R 266117 CDS YP_644310.1 108804373 4116400 complement(1552716..1553978) 1 NC_008148.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1553978 clpX 4116400 clpX Rubrobacter xylanophilus DSM 9941 ATP-dependent protease ATP-binding subunit ClpX YP_644310.1 1552716 R 266117 CDS YP_644311.1 108804374 4116401 complement(1554007..1554609) 1 NC_008148.1 KEGG: ade:Adeh_3353 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; ATP-dependent Clp protease proteolytic subunit ClpP 1554609 4116401 Rxyl_1537 Rubrobacter xylanophilus DSM 9941 ATP-dependent Clp protease proteolytic subunit ClpP YP_644311.1 1554007 R 266117 CDS YP_644312.1 108804375 4116402 complement(1554606..1556042) 1 NC_008148.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type trigger factor-like; KEGG: mta:Moth_0527 trigger factor; trigger factor 1556042 4116402 Rxyl_1538 Rubrobacter xylanophilus DSM 9941 trigger factor YP_644312.1 1554606 R 266117 CDS YP_644313.1 108804376 4116403 complement(1556244..1558232) 1 NC_008148.1 PFAM: TrkA-N TrkA-C sodium/hydrogen exchanger; KEGG: dps:DP1776 related to potassium efflux transporter; sodium/hydrogen exchanger 1558232 4116403 Rxyl_1539 Rubrobacter xylanophilus DSM 9941 sodium/hydrogen exchanger YP_644313.1 1556244 R 266117 CDS YP_644314.1 108804377 4116404 complement(1558282..1559268) 1 NC_008148.1 TIGRFAM: cell envelope-related function transcriptional attenuator common domain; PFAM: cell envelope-related transcriptional attenuator; KEGG: sth:STH1893 transcriptional regulator; cell envelope-related transcriptional attenuator 1559268 4116404 Rxyl_1540 Rubrobacter xylanophilus DSM 9941 cell envelope-related transcriptional attenuator YP_644314.1 1558282 R 266117 CDS YP_644315.1 108804378 4116405 complement(1559285..1560760) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS02171 probable transport transmembrane protein; major facilitator transporter 1560760 4116405 Rxyl_1541 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644315.1 1559285 R 266117 CDS YP_644316.1 108804379 4116406 complement(1560788..1562416) 1 NC_008148.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: bpm:BURPS1710b_1048 benzoylformate decarboxylase; thiamine pyrophosphate enzyme-like TPP binding region 1562416 4116406 Rxyl_1542 Rubrobacter xylanophilus DSM 9941 thiamine pyrophosphate enzyme-like TPP binding region YP_644316.1 1560788 R 266117 CDS YP_644317.1 108804380 4116873 1562635..1563165 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: pae:PA4095 hypothetical protein; cupin 2 barrel domain-containing protein 1563165 4116873 Rxyl_1543 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_644317.1 1562635 D 266117 CDS YP_644318.1 108804381 4116874 complement(1563169..1565457) 1 NC_008148.1 TIGRFAM: GGDEF domain; PFAM: GGDEF EAL; KEGG: tel:tll0627 hypothetical protein; diguanylate cyclase/phosphodiesterase 1565457 4116874 Rxyl_1544 Rubrobacter xylanophilus DSM 9941 diguanylate cyclase/phosphodiesterase YP_644318.1 1563169 R 266117 CDS YP_644319.1 108804382 4116875 complement(1565583..1566362) 1 NC_008148.1 PFAM: inositol monophosphatase; KEGG: ade:Adeh_3387 inositol-1(or 4)-monophosphatase; inositol-1(or 4)-monophosphatase 1566362 4116875 Rxyl_1545 Rubrobacter xylanophilus DSM 9941 inositol-1(or 4)-monophosphatase YP_644319.1 1565583 R 266117 CDS YP_644320.1 108804383 4116876 complement(1566515..1566745) 1 NC_008148.1 hypothetical protein 1566745 4116876 Rxyl_1546 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644320.1 1566515 R 266117 CDS YP_644321.1 108804384 4116877 complement(1566892..1567440) 1 NC_008148.1 KEGG: aci:ACIAD0959 hypothetical protein; hypothetical protein 1567440 4116877 Rxyl_1547 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644321.1 1566892 R 266117 CDS YP_644322.1 108804385 4116878 complement(1567703..1568803) 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: deh:cbdb_A774 ABC transporter, permease protein; ABC transporter 1568803 4116878 Rxyl_1548 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_644322.1 1567703 R 266117 CDS YP_644323.1 108804386 4116879 complement(1568803..1569762) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: det:DET0794 ABC transporter, ATP-binding protein; ABC transporter-like protein 1569762 4116879 Rxyl_1549 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644323.1 1568803 R 266117 CDS YP_644324.1 108804387 4116880 complement(1569923..1570585) 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: sth:STH649 two-component response regulator; two component LuxR family transcriptional regulator 1570585 4116880 Rxyl_1550 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_644324.1 1569923 R 266117 CDS YP_644325.1 108804388 4116881 complement(1570582..1571805) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO1071 two component system sensor kinase; sensor signal transduction histidine kinase 1571805 4116881 Rxyl_1551 Rubrobacter xylanophilus DSM 9941 sensor signal transduction histidine kinase YP_644325.1 1570582 R 266117 CDS YP_644326.1 108804389 4116882 1572260..1572511 1 NC_008148.1 hypothetical protein 1572511 4116882 Rxyl_1552 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644326.1 1572260 D 266117 CDS YP_644327.1 108804390 4116883 complement(1572492..1573409) 1 NC_008148.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gvi:glr3360 LysR family transcriptional regulatory protein; LysR family transcriptional regulator 1573409 4116883 Rxyl_1553 Rubrobacter xylanophilus DSM 9941 LysR family transcriptional regulator YP_644327.1 1572492 R 266117 CDS YP_644328.1 108804391 4116884 1573634..1574389 1 NC_008148.1 KEGG: mlo:mlr3415 hypothetical protein; hypothetical protein 1574389 4116884 Rxyl_1554 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644328.1 1573634 D 266117 CDS YP_644329.1 108804392 4116885 1574405..1575652 1 NC_008148.1 KEGG: lin:lin1013 highly similar to glycine betaine ABC transporter (ATP-binding protein); TIGRFAM: glycine betaine/L-proline transport ATP binding subunit; PFAM: CBS ABC transporter related; SMART: ATPase; glycine betaine/L-proline transport ATP binding subunit 1575652 4116885 Rxyl_1555 Rubrobacter xylanophilus DSM 9941 glycine betaine/L-proline transport ATP binding subunit YP_644329.1 1574405 D 266117 CDS YP_644330.1 108804393 4116886 1575709..1576575 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bth:BT1750 glycine betaine/L-proline transport system permease; binding-protein-dependent transport system inner membrane protein 1576575 4116886 Rxyl_1556 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_644330.1 1575709 D 266117 CDS YP_644331.1 108804394 4116887 1576627..1577568 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bur:Bcep18194_B0580 ABC proline/glycine betaine transporter, periplasmic ligand binding protein; twin-arginine translocation pathway signal protein 1577568 4116887 Rxyl_1557 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_644331.1 1576627 D 266117 CDS YP_644332.1 108804395 4116888 1577597..1578781 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV6950 putative sarcosine oxidase; sarcosine oxidase 1578781 4116888 Rxyl_1558 Rubrobacter xylanophilus DSM 9941 sarcosine oxidase YP_644332.1 1577597 D 266117 CDS YP_644333.1 108804396 4116889 1578809..1580119 1 NC_008148.1 PFAM: peptidase M24; KEGG: mlo:mlr1214 proline dipeptidase; peptidase M24 1580119 4116889 Rxyl_1559 Rubrobacter xylanophilus DSM 9941 peptidase M24 YP_644333.1 1578809 D 266117 CDS YP_644334.1 108804397 4116890 1580231..1581535 1 NC_008148.1 PFAM: Rieske [2Fe-2S] region; KEGG: pub:SAR11_1263 probable dioxygenase alpha chain; Rieske (2Fe-2S) domain-containing protein 1581535 4116890 Rxyl_1560 Rubrobacter xylanophilus DSM 9941 Rieske (2Fe-2S) domain-containing protein YP_644334.1 1580231 D 266117 CDS YP_644335.1 108804398 4116891 1581544..1583055 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0877 aldehyde dehydrogenase family protein; aldehyde dehydrogenase (acceptor) 1583055 4116891 Rxyl_1561 Rubrobacter xylanophilus DSM 9941 aldehyde dehydrogenase (acceptor) YP_644335.1 1581544 D 266117 CDS YP_644336.1 108804399 4116892 1583290..1584336 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sme:SMb20422 putative oxidoreductase protein; zinc-binding alcohol dehydrogenase 1584336 4116892 Rxyl_1562 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_644336.1 1583290 D 266117 CDS YP_644337.1 108804400 4116445 complement(1584766..1585977) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcl:ABC0476 cyanate transporter; major facilitator transporter 1585977 4116445 Rxyl_1563 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644337.1 1584766 R 266117 CDS YP_644338.1 108804401 4116446 complement(1585997..1587172) 1 NC_008148.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 1587172 4116446 Rxyl_1564 Rubrobacter xylanophilus DSM 9941 4-hydroxybenzoate 3-monooxygenase YP_644338.1 1585997 R 266117 CDS YP_644339.1 108804402 4116447 complement(1587349..1588722) 1 NC_008148.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nar:Saro_2861 vanillate/3-O-methylgallate O-demethylase; aminomethyltransferase 1588722 4116447 Rxyl_1565 Rubrobacter xylanophilus DSM 9941 aminomethyltransferase YP_644339.1 1587349 R 266117 CDS YP_644340.1 108804403 4116448 complement(1588823..1589785) 1 NC_008148.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: gme:Gmet_1162 tetrahydrofolate dehydrogenase/cyclohydrolase; methylenetetrahydrofolate dehydrogenase (NADP+) 1589785 4116448 Rxyl_1566 Rubrobacter xylanophilus DSM 9941 methylenetetrahydrofolate dehydrogenase (NADP+) YP_644340.1 1588823 R 266117 CDS YP_644341.1 108804404 4116449 complement(1589795..1590376) 1 NC_008148.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: mca:MCA0507 methenyltetrahydrofolate cyclohydrolase; formiminotransferase-cyclodeaminase 1590376 4116449 Rxyl_1567 Rubrobacter xylanophilus DSM 9941 formiminotransferase-cyclodeaminase YP_644341.1 1589795 R 266117 CDS YP_644342.1 108804405 4116450 complement(1590373..1592103) 1 NC_008148.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1592103 4116450 Rxyl_1568 Rubrobacter xylanophilus DSM 9941 formate--tetrahydrofolate ligase YP_644342.1 1590373 R 266117 CDS YP_644343.1 108804406 4116451 complement(1592303..1594297) 1 NC_008148.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 1594297 4116451 Rxyl_1569 Rubrobacter xylanophilus DSM 9941 acetoacetyl-CoA synthetase YP_644343.1 1592303 R 266117 CDS YP_644344.1 108804407 4116452 complement(1594297..1595112) 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nar:Saro_1858 haloacid dehalogenase-like hydrolase; HAD family hydrolase 1595112 4116452 Rxyl_1570 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_644344.1 1594297 R 266117 CDS YP_644345.1 108804408 4116453 complement(1595090..1596568) 1 NC_008148.1 PFAM: pyruvate carboxyltransferase Conserved carboxylase region; KEGG: eba:ebA314 putative carboxylase subunit of acetyl-CoA carboxylase-like enzyme; hypothetical protein 1596568 4116453 Rxyl_1571 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644345.1 1595090 R 266117 CDS YP_644346.1 108804409 4116454 complement(1596565..1597911) 1 NC_008148.1 PFAM: ATP-dependent carboxylate-amine ligase-like, ATP-grasp Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: eba:ebA316 biotin carboxylase subunit of acetyl-CoA carboxylase-like enzyme; carbamoyl-phosphate synthase L chain, ATP-binding protein 1597911 4116454 Rxyl_1572 Rubrobacter xylanophilus DSM 9941 carbamoyl-phosphate synthase L chain, ATP-binding protein YP_644346.1 1596565 R 266117 CDS YP_644347.1 108804410 4116455 complement(1597911..1598396) 1 NC_008148.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: bha:BH2788 acetyl-CoA carboxylase biotin carboxyl carrier protein; biotin carboxyl carrier protein 1598396 4116455 Rxyl_1573 Rubrobacter xylanophilus DSM 9941 biotin carboxyl carrier protein YP_644347.1 1597911 R 266117 CDS YP_644348.1 108804411 4116456 complement(1598397..1599497) 1 NC_008148.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; KEGG: mka:MK0252 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; pyruvate,water dikinase 1599497 4116456 Rxyl_1574 Rubrobacter xylanophilus DSM 9941 pyruvate,water dikinase YP_644348.1 1598397 R 266117 CDS YP_644349.1 108804412 4116457 complement(1599490..1601322) 1 NC_008148.1 PFAM: PEP-utilising enzyme, mobile region; KEGG: gme:Gmet_2100 hypothetical protein; hypothetical protein 1601322 4116457 Rxyl_1575 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644349.1 1599490 R 266117 CDS YP_644350.1 108804413 4116458 complement(1601462..1602403) 1 NC_008148.1 PFAM: methylenetetrahydrofolate reductase; KEGG: hma:pNG7363 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 1602403 4116458 Rxyl_1576 Rubrobacter xylanophilus DSM 9941 methylenetetrahydrofolate reductase YP_644350.1 1601462 R 266117 CDS YP_644351.1 108804414 4116459 complement(1602582..1602968) 1 NC_008148.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1968 putative 3-oxoadipate enol-lactone hydrolase; 4-carboxymuconolactone decarboxylase 1602968 4116459 Rxyl_1577 Rubrobacter xylanophilus DSM 9941 4-carboxymuconolactone decarboxylase YP_644351.1 1602582 R 266117 CDS YP_644352.1 108804415 4116460 complement(1602965..1603750) 1 NC_008148.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: tfu:Tfu_0874 alpha/beta hydrolase; 3-oxoadipate enol-lactonase 1603750 4116460 Rxyl_1578 Rubrobacter xylanophilus DSM 9941 3-oxoadipate enol-lactonase YP_644352.1 1602965 R 266117 CDS YP_644353.1 108804416 4116461 complement(1603747..1605093) 1 NC_008148.1 TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: xcb:XC_0381 3-carboxy-cis,cis-muconate cycloisomerase; 3-carboxy-cis,cis-muconate cycloisomerase 1605093 4116461 Rxyl_1579 Rubrobacter xylanophilus DSM 9941 3-carboxy-cis,cis-muconate cycloisomerase YP_644353.1 1603747 R 266117 CDS YP_644354.1 108804417 4116462 complement(1605090..1605680) 1 NC_008148.1 KEGG: reu:Reut_B5024 intradiol ring-cleavage dioxygenase; TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha 1605680 4116462 Rxyl_1580 Rubrobacter xylanophilus DSM 9941 protocatechuate 3,4-dioxygenase subunit alpha YP_644354.1 1605090 R 266117 CDS YP_644355.1 108804418 4116463 complement(1605680..1606414) 1 NC_008148.1 TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pfo:Pfl_1270 intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit beta 1606414 4116463 Rxyl_1581 Rubrobacter xylanophilus DSM 9941 protocatechuate 3,4-dioxygenase subunit beta YP_644355.1 1605680 R 266117 CDS YP_644356.1 108804419 4117028 complement(1606431..1607705) 1 NC_008148.1 PFAM: Thiolase; KEGG: tth:TTC0623 beta-ketoadipyl CoA thiolase; acetyl-CoA C-acetyltransferase 1607705 4117028 Rxyl_1582 Rubrobacter xylanophilus DSM 9941 acetyl-CoA C-acetyltransferase YP_644356.1 1606431 R 266117 CDS YP_644357.1 108804420 4117029 complement(1607742..1608551) 1 NC_008148.1 PFAM: coenzyme A transferase; KEGG: nfa:nfa35180 putative CoA transferase B subunit; glutaconate CoA-transferase 1608551 4117029 Rxyl_1583 Rubrobacter xylanophilus DSM 9941 glutaconate CoA-transferase YP_644357.1 1607742 R 266117 CDS YP_644358.1 108804421 4117030 complement(1608548..1609408) 1 NC_008148.1 PFAM: coenzyme A transferase; KEGG: nfa:nfa35190 putative CoA transferase A subunit; glutaconate CoA-transferase 1609408 4117030 Rxyl_1584 Rubrobacter xylanophilus DSM 9941 glutaconate CoA-transferase YP_644358.1 1608548 R 266117 CDS YP_644359.1 108804422 4117031 1609551..1610522 1 NC_008148.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gvi:glr3360 LysR family transcriptional regulatory protein; LysR family transcriptional regulator 1610522 4117031 Rxyl_1585 Rubrobacter xylanophilus DSM 9941 LysR family transcriptional regulator YP_644359.1 1609551 D 266117 CDS YP_644360.1 108804423 4117032 1610519..1611634 1 NC_008148.1 PFAM: Methionine synthase, vitamin-B12 independent Cobalamin-independent synthase MetE-like; KEGG: rpb:RPB_1584 methionine synthase, vitamin-B12 independent; methionine synthase, vitamin-B12 independent 1611634 4117032 Rxyl_1586 Rubrobacter xylanophilus DSM 9941 methionine synthase, vitamin-B12 independent YP_644360.1 1610519 D 266117 CDS YP_644361.1 108804424 4117033 1611858..1613210 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter 1613210 4117033 Rxyl_1587 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644361.1 1611858 D 266117 CDS YP_644362.1 108804425 4117034 1613308..1613769 1 NC_008148.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1613769 4117034 Rxyl_1588 Rubrobacter xylanophilus DSM 9941 3-dehydroquinate dehydratase YP_644362.1 1613308 D 266117 CDS YP_644363.1 108804426 4117035 1613766..1614791 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ret:RHE_CH02965 probable L-iditol 2-dehydrogenase protein; alcohol dehydrogenase GroES-like protein 1614791 4117035 Rxyl_1589 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_644363.1 1613766 D 266117 CDS YP_644364.1 108804427 4117036 1614788..1615648 1 NC_008148.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: pfl:PFL_5391 hypothetical protein; xylose isomerase-like protein 1615648 4117036 Rxyl_1590 Rubrobacter xylanophilus DSM 9941 xylose isomerase-like protein YP_644364.1 1614788 D 266117 CDS YP_644365.1 108804428 4117037 complement(1615653..1616219) 1 NC_008148.1 hypothetical protein 1616219 4117037 Rxyl_1591 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644365.1 1615653 R 266117 CDS YP_644366.1 108804429 4117038 complement(1616506..1617639) 1 NC_008148.1 PFAM: phage integrase; KEGG: mta:Moth_1796 phage integrase; phage integrase 1617639 4117038 Rxyl_1592 Rubrobacter xylanophilus DSM 9941 phage integrase YP_644366.1 1616506 R 266117 CDS YP_644367.1 108804430 4117039 complement(1618175..1618540) 1 NC_008148.1 hypothetical protein 1618540 4117039 Rxyl_1593 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644367.1 1618175 R 266117 CDS YP_644368.1 108804431 4117040 complement(1618554..1618910) 1 NC_008148.1 hypothetical protein 1618910 4117040 Rxyl_1594 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644368.1 1618554 R 266117 CDS YP_644369.1 108804432 4117041 complement(1618926..1619354) 1 NC_008148.1 hypothetical protein 1619354 4117041 Rxyl_1595 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644369.1 1618926 R 266117 CDS YP_644370.1 108804433 4117042 complement(1619430..1620344) 1 NC_008148.1 KEGG: dra:DR0528 hypothetical protein; hypothetical protein 1620344 4117042 Rxyl_1596 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644370.1 1619430 R 266117 CDS YP_644371.1 108804434 4117043 complement(1620426..1620773) 1 NC_008148.1 hypothetical protein 1620773 4117043 Rxyl_1597 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644371.1 1620426 R 266117 CDS YP_644372.1 108804435 4117044 complement(1621223..1622788) 1 NC_008148.1 KEGG: nwi:Nwi_1258 hypothetical protein; hypothetical protein 1622788 4117044 Rxyl_1598 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644372.1 1621223 R 266117 CDS YP_644373.1 108804436 4117045 complement(1622818..1623555) 1 NC_008148.1 KEGG: mhu:Mhun_0707 hypothetical protein; hypothetical protein 1623555 4117045 Rxyl_1599 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644373.1 1622818 R 266117 CDS YP_644374.1 108804437 4117046 complement(1623568..1623783) 1 NC_008148.1 TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; excisionase/Xis, DNA-binding protein 1623783 4117046 Rxyl_1600 Rubrobacter xylanophilus DSM 9941 excisionase/Xis, DNA-binding protein YP_644374.1 1623568 R 266117 CDS YP_644375.1 108804438 4117047 complement(1623882..1624958) 1 NC_008148.1 hypothetical protein 1624958 4117047 Rxyl_1601 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644375.1 1623882 R 266117 CDS YP_644376.1 108804439 4116349 complement(1625509..1626354) 1 NC_008148.1 KEGG: gme:Gmet_0547 glutamate racemase; TIGRFAM: Glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 1626354 4116349 Rxyl_1602 Rubrobacter xylanophilus DSM 9941 glutamate racemase YP_644376.1 1625509 R 266117 CDS YP_644377.1 108804440 4116350 complement(1626824..1627276) 1 NC_008148.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1627276 smpB 4116350 smpB Rubrobacter xylanophilus DSM 9941 SsrA-binding protein YP_644377.1 1626824 R 266117 CDS YP_644378.1 108804441 4116351 complement(1627273..1628880) 1 NC_008148.1 PFAM: ribonuclease II RNA binding S1; KEGG: nmu:Nmul_A1953 VacB and RNase II family 3'-5' exoribonuclease; RNAse R 1628880 4116351 Rxyl_1604 Rubrobacter xylanophilus DSM 9941 RNAse R YP_644378.1 1627273 R 266117 CDS YP_644379.1 108804442 4116352 complement(1628963..1629850) 1 NC_008148.1 PFAM: protein of unknown function DUF214; KEGG: tte:TTE1976 cell division protein; cell division protein FtsX 1629850 4116352 Rxyl_1605 Rubrobacter xylanophilus DSM 9941 cell division protein FtsX YP_644379.1 1628963 R 266117 CDS YP_644380.1 108804443 4116353 complement(1629840..1630526) 1 NC_008148.1 KEGG: tte:TTE1977 predicted ATPase involved in cell division; TIGRFAM: Cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase; cell division ATP-binding protein FtsE 1630526 4116353 Rxyl_1606 Rubrobacter xylanophilus DSM 9941 cell division ATP-binding protein FtsE YP_644380.1 1629840 R 266117 CDS YP_644381.1 108804444 4116354 complement(1630623..1631342) 1 NC_008148.1 hypothetical protein 1631342 4116354 Rxyl_1607 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644381.1 1630623 R 266117 CDS YP_644382.1 108804445 4116355 1631528..1631869 1 NC_008148.1 PFAM: regulatory protein, ArsR; KEGG: tel:tll0769 transcriptional regulator; ArsR family transcriptional regulator 1631869 4116355 Rxyl_1608 Rubrobacter xylanophilus DSM 9941 ArsR family transcriptional regulator YP_644382.1 1631528 D 266117 CDS YP_644383.1 108804446 4116356 complement(1631887..1632129) 1 NC_008148.1 TIGRFAM: Glutaredoxin-like protein, YruB; PFAM: glutaredoxin; KEGG: gka:GK2075 glutaredoxin; glutaredoxin-like protein YruB 1632129 4116356 Rxyl_1609 Rubrobacter xylanophilus DSM 9941 glutaredoxin-like protein YruB YP_644383.1 1631887 R 266117 CDS YP_644384.1 108804447 4116357 complement(1632573..1632968) 1 NC_008148.1 PFAM: protein of unknown function DUF202; KEGG: sai:Saci_1091 membrane protein; hypothetical protein 1632968 4116357 Rxyl_1610 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644384.1 1632573 R 266117 CDS YP_644385.1 108804448 4116358 complement(1633021..1634697) 1 NC_008148.1 TIGRFAM: sulfate permease; PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: gsu:GSU2312 sulfate transporter family protein; sulfate permease 1634697 4116358 Rxyl_1611 Rubrobacter xylanophilus DSM 9941 sulfate permease YP_644385.1 1633021 R 266117 CDS YP_644386.1 108804449 4116359 complement(1634889..1637792) 1 NC_008148.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: cch:Cag_1964 molybdenum enzyme related to thiosulfate reductase and polysulfide reductase, large subunit; molydopterin dinucleotide-binding region 1637792 4116359 Rxyl_1612 Rubrobacter xylanophilus DSM 9941 molydopterin dinucleotide-binding region YP_644386.1 1634889 R 266117 CDS YP_644387.1 108804450 4116360 complement(1637821..1639416) 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Polysulphide reductase, NrfD; KEGG: plt:Plut_0026 Fe-S-cluster-containing hydrogenase components 1-like; 4Fe-4S ferredoxin 1639416 4116360 Rxyl_1613 Rubrobacter xylanophilus DSM 9941 4Fe-4S ferredoxin YP_644387.1 1637821 R 266117 CDS YP_644388.1 108804451 4116361 complement(1639523..1640458) 1 NC_008148.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gme:Gmet_1084 transcriptional regulator, LysR family; LysR family transcriptional regulator 1640458 4116361 Rxyl_1614 Rubrobacter xylanophilus DSM 9941 LysR family transcriptional regulator YP_644388.1 1639523 R 266117 CDS YP_644389.1 108804452 4116362 complement(1641145..1642260) 1 NC_008148.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_2884 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1642260 4116362 Rxyl_1616 Rubrobacter xylanophilus DSM 9941 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_644389.1 1641145 R 266117 CDS YP_644390.1 108804453 4116363 complement(1642247..1642714) 1 NC_008148.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: mlo:msr8615 hypothetical protein; hypothetical protein 1642714 4116363 Rxyl_1617 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644390.1 1642247 R 266117 CDS YP_644391.1 108804454 4116364 complement(1642726..1643139) 1 NC_008148.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bbr:BB0225 putative membrane protein; hypothetical protein 1643139 4116364 Rxyl_1618 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644391.1 1642726 R 266117 CDS YP_644392.1 108804455 4116365 1643340..1644779 1 NC_008148.1 PFAM: beta-lactamase-like Rhodanese-like; KEGG: cgb:cg0071 metallo-beta-lactamase superfamily; beta-lactamase-like protein 1644779 4116365 Rxyl_1619 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644392.1 1643340 D 266117 CDS YP_644393.1 108804456 4116366 complement(1644733..1645833) 1 NC_008148.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor PCRF; KEGG: pca:Pcar_1247 peptide chain release factor 2; peptide chain release factor 2 1645833 4116366 Rxyl_1620 Rubrobacter xylanophilus DSM 9941 peptide chain release factor 2 YP_644393.1 1644733 R 266117 CDS YP_644394.1 108804457 4116367 complement(1645838..1648546) 1 NC_008148.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif SecA DEAD-like SecA Wing and Scaffold SecA preprotein cross-linking region; KEGG: chy:CHY_0162 translocase; protein translocase subunit secA 1648546 4116367 Rxyl_1621 Rubrobacter xylanophilus DSM 9941 protein translocase subunit secA YP_644394.1 1645838 R 266117 CDS YP_644395.1 108804458 4116329 complement(1648573..1649142) 1 NC_008148.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cya:CYA_2445 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30P 1649142 4116329 Rxyl_1622 Rubrobacter xylanophilus DSM 9941 sigma 54 modulation protein/30S ribosomal protein S30P YP_644395.1 1648573 R 266117 CDS YP_644396.1 108804459 4116330 complement(1649169..1649852) 1 NC_008148.1 PFAM: phosphoribosyltransferase; KEGG: gsu:GSU0124 competence protein F, putative; phosphoribosyltransferase 1649852 4116330 Rxyl_1623 Rubrobacter xylanophilus DSM 9941 phosphoribosyltransferase YP_644396.1 1649169 R 266117 CDS YP_644397.1 108804460 4116331 complement(1649865..1650968) 1 NC_008148.1 PFAM: transferase hexapeptide repeat Nucleotidyl transferase; KEGG: det:DET1208 nucleotidyltransferase family protein; nucleotidyl transferase 1650968 4116331 Rxyl_1624 Rubrobacter xylanophilus DSM 9941 nucleotidyl transferase YP_644397.1 1649865 R 266117 CDS YP_644398.1 108804461 4116332 complement(1650981..1652423) 1 NC_008148.1 KEGG: gsu:GSU0351 NADH dehydrogenase I, N subunit; TIGRFAM: Proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 1652423 4116332 Rxyl_1625 Rubrobacter xylanophilus DSM 9941 proton-translocating NADH-quinone oxidoreductase subunit N YP_644398.1 1650981 R 266117 CDS YP_644399.1 108804462 4116333 complement(1652425..1653879) 1 NC_008148.1 KEGG: gvi:gll2536 NADH dehydrogenase subunit 4; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1653879 4116333 Rxyl_1626 Rubrobacter xylanophilus DSM 9941 proton-translocating NADH-quinone oxidoreductase subunit M YP_644399.1 1652425 R 266117 CDS YP_644400.1 108804463 4116334 complement(1653876..1655846) 1 NC_008148.1 KEGG: mta:Moth_0985 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1655846 4116334 Rxyl_1627 Rubrobacter xylanophilus DSM 9941 proton-translocating NADH-quinone oxidoreductase subunit L YP_644400.1 1653876 R 266117 CDS YP_644401.1 108804464 4116335 complement(1655864..1656202) 1 NC_008148.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: bcz:BCZK4993 NADH dehydrogenase I, subunit K (NADH-quinone oxidoreductase, chain K); NADH-ubiquinone oxidoreductase subunit 4L 1656202 4116335 Rxyl_1628 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone oxidoreductase subunit 4L YP_644401.1 1655864 R 266117 CDS YP_644402.1 108804465 4116336 complement(1656202..1656735) 1 NC_008148.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: sye:Syncc9902_0282 NADH dehydrogenase subunit J; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1656735 4116336 Rxyl_1629 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 YP_644402.1 1656202 R 266117 CDS YP_644403.1 108804466 4116337 complement(1656852..1657847) 1 NC_008148.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: noc:Noc_2558 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1657847 4116337 Rxyl_1630 Rubrobacter xylanophilus DSM 9941 respiratory-chain NADH dehydrogenase subunit 1 YP_644403.1 1656852 R 266117 CDS YP_644404.1 108804467 4116338 complement(1657847..1658923) 1 NC_008148.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: gka:GK3353 NADH:ubiquinone oxidoreductase subunit 7; NADH dehydrogenase (ubiquinone) 1658923 4116338 Rxyl_1631 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (ubiquinone) YP_644404.1 1657847 R 266117 CDS YP_644405.1 108804468 4116339 complement(1659042..1659533) 1 NC_008148.1 PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: sme:SMa1531 NADH dehydrogenase I chain C; NADH dehydrogenase (ubiquinone), 30 kDa subunit 1659533 4116339 Rxyl_1632 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (ubiquinone), 30 kDa subunit YP_644405.1 1659042 R 266117 CDS YP_644406.1 108804469 4116340 complement(1659535..1660290) 1 NC_008148.1 KEGG: gka:GK3355 NADH:ubiquinone oxidoreductase chain B (Fe-S oxidoreductases); TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH-quinone oxidoreductase subunit B 1660290 4116340 Rxyl_1633 Rubrobacter xylanophilus DSM 9941 NADH-quinone oxidoreductase subunit B YP_644406.1 1659535 R 266117 CDS YP_644407.1 108804470 4116341 complement(1660281..1660670) 1 NC_008148.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: cte:CT0766 NADH dehydrogenase I, subunit 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1660670 4116341 Rxyl_1634 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 YP_644407.1 1660281 R 266117 CDS YP_644408.1 108804471 4116342 complement(1660760..1661962) 1 NC_008148.1 PFAM: peptidase M20 peptidase dimerisation; KEGG: bcl:ABC3512 succinyl-diaminopimelate desuccinylase; peptidase M20 1661962 4116342 Rxyl_1635 Rubrobacter xylanophilus DSM 9941 peptidase M20 YP_644408.1 1660760 R 266117 CDS YP_644409.1 108804472 4116343 complement(1661983..1663263) 1 NC_008148.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: gka:GK3341 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1663263 4116343 Rxyl_1636 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_644409.1 1661983 R 266117 CDS YP_644410.1 108804473 4116344 complement(1663332..1663772) 1 NC_008148.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: bha:BH3753 ATP synthase epsilon subunit; ATP synthase F1 subunit epsilon 1663772 4116344 Rxyl_1637 Rubrobacter xylanophilus DSM 9941 ATP synthase F1 subunit epsilon YP_644410.1 1663332 R 266117 CDS YP_644411.1 108804474 4116345 complement(1663772..1665313) 1 NC_008148.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1665313 4116345 Rxyl_1638 Rubrobacter xylanophilus DSM 9941 F0F1 ATP synthase subunit beta YP_644411.1 1663772 R 266117 CDS YP_644412.1 108804475 4116346 complement(1665329..1666201) 1 NC_008148.1 KEGG: chy:CHY_2546 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit; ATP synthase F1 subunit gamma 1666201 4116346 Rxyl_1639 Rubrobacter xylanophilus DSM 9941 ATP synthase F1 subunit gamma YP_644412.1 1665329 R 266117 CDS YP_644413.1 108804476 4116347 complement(1666205..1667785) 1 NC_008148.1 KEGG: tma:TM1612 ATP synthase F1, subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region H+-transporting two-sector ATPase, alpha/beta subunit-like; ATP synthase F1 subunit alpha 1667785 4116347 Rxyl_1640 Rubrobacter xylanophilus DSM 9941 ATP synthase F1 subunit alpha YP_644413.1 1666205 R 266117 CDS YP_644414.1 108804477 4116348 complement(1667785..1668324) 1 NC_008148.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: chy:CHY_2548 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta 1668324 4116348 Rxyl_1641 Rubrobacter xylanophilus DSM 9941 ATP synthase F1 subunit delta YP_644414.1 1667785 R 266117 CDS YP_644415.1 108804478 4116251 complement(1668321..1668845) 1 NC_008148.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: sru:SRU_0913 ATP synthase F0, B subunit; ATP synthase F0 subunit B 1668845 4116251 Rxyl_1642 Rubrobacter xylanophilus DSM 9941 ATP synthase F0 subunit B YP_644415.1 1668321 R 266117 CDS YP_644416.1 108804479 4116252 complement(1668885..1669208) 1 NC_008148.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: bsu:BG10816 ATP synthase c chain; ATP synthase F0 subunit C 1669208 4116252 Rxyl_1643 Rubrobacter xylanophilus DSM 9941 ATP synthase F0 subunit C YP_644416.1 1668885 R 266117 CDS YP_644417.1 108804480 4116253 complement(1669216..1669992) 1 NC_008148.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: cte:CT0021 ATP synthase F0, A subunit; ATP synthase F0 subunit A 1669992 4116253 Rxyl_1644 Rubrobacter xylanophilus DSM 9941 ATP synthase F0 subunit A YP_644417.1 1669216 R 266117 CDS YP_644418.1 108804481 4116254 complement(1670010..1670432) 1 NC_008148.1 hypothetical protein 1670432 4116254 Rxyl_1645 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644418.1 1670010 R 266117 CDS YP_644419.1 108804482 4116255 complement(1670432..1670650) 1 NC_008148.1 hypothetical protein 1670650 4116255 Rxyl_1646 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644419.1 1670432 R 266117 CDS YP_644420.1 108804483 4116256 complement(1670705..1671178) 1 NC_008148.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: chy:CHY_2556 putative ComE operon protein 2; CMP/dCMP deaminase 1671178 4116256 Rxyl_1647 Rubrobacter xylanophilus DSM 9941 CMP/dCMP deaminase YP_644420.1 1670705 R 266117 CDS YP_644421.1 108804484 4116257 complement(1671165..1671803) 1 NC_008148.1 TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sth:STH79 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 1671803 4116257 Rxyl_1648 Rubrobacter xylanophilus DSM 9941 uracil phosphoribosyltransferase YP_644421.1 1671165 R 266117 CDS YP_644422.1 108804485 4116258 complement(1671796..1673100) 1 NC_008148.1 PFAM: glycine hydroxymethyltransferase aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: tte:TTE2130 glycine hydroxymethyltransferase; serine hydroxymethyltransferase 1673100 4116258 Rxyl_1649 Rubrobacter xylanophilus DSM 9941 serine hydroxymethyltransferase YP_644422.1 1671796 R 266117 CDS YP_644423.1 108804486 4116259 complement(1673160..1673735) 1 NC_008148.1 TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: SUA5/yciO/yrdC-like; KEGG: tfu:Tfu_1961 SUA5/YciO/YrdC/YwlC; translation factor SUA5 1673735 4116259 Rxyl_1650 Rubrobacter xylanophilus DSM 9941 translation factor SUA5 YP_644423.1 1673160 R 266117 CDS YP_644424.1 108804487 4116260 complement(1673732..1674574) 1 NC_008148.1 TIGRFAM: modification methylase, HemK family; PFAM: putative RNA methylase methyltransferase small ribosomal L11 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: sth:STH74 putative protoporphyrinogen oxidase; HemK family modification methylase 1674574 4116260 Rxyl_1651 Rubrobacter xylanophilus DSM 9941 HemK family modification methylase YP_644424.1 1673732 R 266117 CDS YP_644425.1 108804488 4116261 complement(1674606..1675700) 1 NC_008148.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor PCRF; KEGG: chy:CHY_2563 peptide chain release factor 1; peptide chain release factor 1 1675700 4116261 Rxyl_1652 Rubrobacter xylanophilus DSM 9941 peptide chain release factor 1 YP_644425.1 1674606 R 266117 CDS YP_644426.1 108804489 4116262 complement(1675703..1676611) 1 NC_008148.1 PFAM: protein of unknown function DUF1385; KEGG: sth:STH72 hypothetical protein; hypothetical protein 1676611 4116262 Rxyl_1653 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644426.1 1675703 R 266117 CDS YP_644427.1 108804490 4116263 complement(1676624..1676893) 1 NC_008148.1 PFAM: ribosomal protein L31; KEGG: sco:SCO3427 putative 50S ribosomal protein L31; 50S ribosomal protein L31 1676893 4116263 Rxyl_1654 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L31 YP_644427.1 1676624 R 266117 CDS YP_644428.1 108804491 4116264 complement(1676986..1678482) 1 NC_008148.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1678482 rho 4116264 rho Rubrobacter xylanophilus DSM 9941 transcription termination factor Rho YP_644428.1 1676986 R 266117 CDS YP_644429.1 108804492 4116265 complement(1678558..1679559) 1 NC_008148.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 1679559 glpX 4116265 glpX Rubrobacter xylanophilus DSM 9941 fructose 1,6-bisphosphatase II YP_644429.1 1678558 R 266117 CDS YP_644430.1 108804493 4116266 complement(1679700..1681028) 1 NC_008148.1 KEGG: mka:MK0505 cyclic 2,3-diphosphoglycerate-synthetase; cyclic 2,3-diphosphoglycerate-synthetase 1681028 4116266 Rxyl_1657 Rubrobacter xylanophilus DSM 9941 cyclic 2,3-diphosphoglycerate-synthetase YP_644430.1 1679700 R 266117 CDS YP_644431.1 108804494 4116267 complement(1681038..1681862) 1 NC_008148.1 PFAM: metallophosphoesterase; KEGG: mac:MA1686 3',5'-cyclic-nucleotide phosphodiesterase; metallophosphoesterase 1681862 4116267 Rxyl_1658 Rubrobacter xylanophilus DSM 9941 metallophosphoesterase YP_644431.1 1681038 R 266117 CDS YP_644432.1 108804495 4116268 complement(1681918..1683549) 1 NC_008148.1 KEGG: gka:GK3401 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 1683549 4116268 Rxyl_1659 Rubrobacter xylanophilus DSM 9941 arginyl-tRNA synthetase YP_644432.1 1681918 R 266117 CDS YP_644433.1 108804496 4116269 complement(1683539..1683778) 1 NC_008148.1 hypothetical protein 1683778 4116269 Rxyl_1660 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644433.1 1683539 R 266117 CDS YP_644434.1 108804497 4117146 1683812..1684336 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi01935 putative phosphinothricin N-acetyltransferase; RBL02351; N-acetyltransferase GCN5 1684336 4117146 Rxyl_1661 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_644434.1 1683812 D 266117 CDS YP_644435.1 108804498 4117147 complement(1684327..1684803) 1 NC_008148.1 PFAM: protein of unknown function DUF163; KEGG: gka:GK3467 hypothetical protein; hypothetical protein 1684803 4117147 Rxyl_1662 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644435.1 1684327 R 266117 CDS YP_644436.1 108804499 4117148 complement(1684800..1685624) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: dps:DP2606 hypothetical protein; beta-lactamase-like protein 1685624 4117148 Rxyl_1663 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644436.1 1684800 R 266117 CDS YP_644437.1 108804500 4117149 complement(1685701..1686504) 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: cpe:CPE2315 sortase, putative; peptidase C60, sortase A and B 1686504 4117149 Rxyl_1664 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_644437.1 1685701 R 266117 CDS YP_644438.1 108804501 4117150 complement(1686510..1687196) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: tth:TT_P0169 hypothetical protein; twin-arginine translocation pathway signal protein 1687196 4117150 Rxyl_1665 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_644438.1 1686510 R 266117 CDS YP_644439.1 108804502 4117151 complement(1687207..1687878) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ttj:TTHB213 hypothetical protein; twin-arginine translocation pathway signal protein 1687878 4117151 Rxyl_1666 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_644439.1 1687207 R 266117 CDS YP_644440.1 108804503 4117152 1688019..1688606 1 NC_008148.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: gvi:gll2708 RNA polymerase ECF-type (group 3) sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1688606 4117152 Rxyl_1667 Rubrobacter xylanophilus DSM 9941 ECF subfamily RNA polymerase sigma-24 factor YP_644440.1 1688019 D 266117 CDS YP_644441.1 108804504 4117153 1688612..1689334 1 NC_008148.1 KEGG: sco:SCO0633 hypothetical protein; hypothetical protein 1689334 4117153 Rxyl_1668 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644441.1 1688612 D 266117 CDS YP_644442.1 108804505 4117154 1689408..1689620 1 NC_008148.1 PFAM: protein of unknown function DUF1458; KEGG: jan:Jann_3624 protein of unknown function DUF1458; hypothetical protein 1689620 4117154 Rxyl_1669 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644442.1 1689408 D 266117 CDS YP_644443.1 108804506 4117155 1689693..1690730 1 NC_008148.1 KEGG: rpb:RPB_0495 putative ammonia monooxygenase; putative ammonia monooxygenase-like protein 1690730 4117155 Rxyl_1670 Rubrobacter xylanophilus DSM 9941 putative ammonia monooxygenase-like protein YP_644443.1 1689693 D 266117 CDS YP_644444.1 108804507 4117156 1690783..1691748 1 NC_008148.1 TIGRFAM: UV-endonuclease uvde; PFAM: UV-endonuclease UvdE; KEGG: tth:TT_P0052 probable UV endonuclease; putative UV damage endonuclease 1691748 uvsE 4117156 uvsE Rubrobacter xylanophilus DSM 9941 putative UV damage endonuclease YP_644444.1 1690783 D 266117 CDS YP_644445.1 108804508 4117157 1691666..1692097 1 NC_008148.1 PFAM: CoA-binding; KEGG: mag:amb2851 protein YccU; CoA-binding protein 1692097 4117157 Rxyl_1672 Rubrobacter xylanophilus DSM 9941 CoA-binding protein YP_644445.1 1691666 D 266117 CDS YP_644446.1 108804509 4117158 1692132..1692803 1 NC_008148.1 TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: ilo:IL1575 L-2-haloalkanoic acid dehalogenase, HAD superfamily; haloacid dehalogenase I 1692803 4117158 Rxyl_1673 Rubrobacter xylanophilus DSM 9941 haloacid dehalogenase I YP_644446.1 1692132 D 266117 CDS YP_644447.1 108804510 4117159 1692814..1693281 1 NC_008148.1 KEGG: dde:Dde_1863 hypothetical protein; hypothetical protein 1693281 4117159 Rxyl_1674 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644447.1 1692814 D 266117 CDS YP_644448.1 108804511 4117160 1693304..1694782 1 NC_008148.1 PFAM: carbohydrate kinase, FGGY; KEGG: gka:GK1941 gluconokinase; carbohydrate kinase 1694782 4117160 Rxyl_1675 Rubrobacter xylanophilus DSM 9941 carbohydrate kinase YP_644448.1 1693304 D 266117 CDS YP_644449.1 108804512 4117161 complement(1694846..1696183) 1 NC_008148.1 KEGG: fra:Francci3_0083 citrate synthase I; TIGRFAM: Citrate synthase I; PFAM: Citrate synthase; citrate synthase 1696183 4117161 Rxyl_1676 Rubrobacter xylanophilus DSM 9941 citrate synthase YP_644449.1 1694846 R 266117 CDS YP_644450.1 108804513 4117162 1696314..1696769 1 NC_008148.1 hypothetical protein 1696769 4117162 Rxyl_1677 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644450.1 1696314 D 266117 CDS YP_644451.1 108804514 4117163 complement(1696742..1697389) 1 NC_008148.1 PFAM: class II aldolase/adducin-like; KEGG: pca:Pcar_3030 L-fuculose phosphate aldolase; class II aldolase/adducin-like protein 1697389 4117163 Rxyl_1678 Rubrobacter xylanophilus DSM 9941 class II aldolase/adducin-like protein YP_644451.1 1696742 R 266117 CDS YP_644452.1 108804515 4117164 complement(1697403..1699493) 1 NC_008148.1 TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin-like NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bld:BLi03561 short chain dehydrogenase; short chain dehydrogenase 1699493 4117164 Rxyl_1679 Rubrobacter xylanophilus DSM 9941 short chain dehydrogenase YP_644452.1 1697403 R 266117 CDS YP_644453.1 108804516 4117165 complement(1699528..1700745) 1 NC_008148.1 TIGRFAM: Rhamnose isomerase related; PFAM: Xylose isomerase-like TIM barrel; KEGG: bld:BLi03559 xylose isomerase; RBL03134; rhamnose isomerase related 1700745 4117165 Rxyl_1680 Rubrobacter xylanophilus DSM 9941 rhamnose isomerase related YP_644453.1 1699528 R 266117 CDS YP_644454.1 108804517 4116640 complement(1700841..1701875) 1 NC_008148.1 KEGG: sco:SCO0808 putative secreted solute-binding lipoprotein; putative secreted solute-binding lipoprotein 1701875 4116640 Rxyl_1681 Rubrobacter xylanophilus DSM 9941 putative secreted solute-binding lipoprotein YP_644454.1 1700841 R 266117 CDS YP_644455.1 108804518 4116641 complement(1701922..1702890) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: pmu:PM1378 ribose ABC transporter, permease protein; inner-membrane translocator 1702890 4116641 Rxyl_1682 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_644455.1 1701922 R 266117 CDS YP_644456.1 108804519 4116642 complement(1702887..1703876) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: bpm:BURPS1710b_2071 ribose ABC transporter, permease protein; inner-membrane translocator 1703876 4116642 Rxyl_1683 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_644456.1 1702887 R 266117 CDS YP_644457.1 108804520 4116643 complement(1703873..1705432) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV7416 putative ABC transporter ATP-binding protein; ABC transporter-like protein 1705432 4116643 Rxyl_1684 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644457.1 1703873 R 266117 CDS YP_644458.1 108804521 4116644 complement(1705434..1706933) 1 NC_008148.1 PFAM: carbohydrate kinase, FGGY; KEGG: sco:SCO0814 putative rhamnose kinase; carbohydrate kinase 1706933 4116644 Rxyl_1685 Rubrobacter xylanophilus DSM 9941 carbohydrate kinase YP_644458.1 1705434 R 266117 CDS YP_644459.1 108804522 4116645 complement(1706930..1707319) 1 NC_008148.1 KEGG: bld:BLi03560 hypothetical protein; hypothetical protein 1707319 4116645 Rxyl_1686 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644459.1 1706930 R 266117 CDS YP_644460.1 108804523 4116646 complement(1707312..1708121) 1 NC_008148.1 PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: sth:STH793 DeoR-family transcriptional regulator; DeoR family transcriptional regulator 1708121 4116646 Rxyl_1687 Rubrobacter xylanophilus DSM 9941 DeoR family transcriptional regulator YP_644460.1 1707312 R 266117 CDS YP_644461.1 108804524 4116647 complement(1711679..1713589) 1 NC_008148.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 1713589 prpE 4116647 prpE Rubrobacter xylanophilus DSM 9941 propionyl-CoA synthetase YP_644461.1 1711679 R 266117 CDS YP_644462.1 108804525 4116648 complement(1713663..1714796) 1 NC_008148.1 PFAM: Stage II sporulation E PAS fold-4; SMART: PAS Protein phosphatase 2C-like; KEGG: sco:SCO5747 regulatory protein; putative PAS/PAC sensor protein 1714796 4116648 Rxyl_1690 Rubrobacter xylanophilus DSM 9941 putative PAS/PAC sensor protein YP_644462.1 1713663 R 266117 CDS YP_644463.1 108804526 4116649 complement(1714798..1715175) 1 NC_008148.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sma:SAV4614 putative anti-sigma factor antagonist; anti-sigma-factor antagonist 1715175 4116649 Rxyl_1691 Rubrobacter xylanophilus DSM 9941 anti-sigma-factor antagonist YP_644463.1 1714798 R 266117 CDS YP_644464.1 108804527 4116650 complement(1715315..1715818) 1 NC_008148.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase-like; KEGG: pab:PAB0892 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit 1715818 4116650 Rxyl_1692 Rubrobacter xylanophilus DSM 9941 3-isopropylmalate dehydratase small subunit YP_644464.1 1715315 R 266117 CDS YP_644465.1 108804528 4116651 complement(1715815..1717089) 1 NC_008148.1 KEGG: mta:Moth_2254 3-isopropylmalate dehydratase, large subunit; TIGRFAM: homoaconitate hydratase family protein 3-isopropylmalate dehydratase; PFAM: aconitate hydratase-like; homoaconitate hydratase family protein 1717089 4116651 Rxyl_1693 Rubrobacter xylanophilus DSM 9941 homoaconitate hydratase family protein YP_644465.1 1715815 R 266117 CDS YP_644466.1 108804529 4116652 complement(1717070..1717699) 1 NC_008148.1 PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase; isochorismatase hydrolase 1717699 4116652 Rxyl_1694 Rubrobacter xylanophilus DSM 9941 isochorismatase hydrolase YP_644466.1 1717070 R 266117 CDS YP_644467.1 108804530 4116653 complement(1717696..1719594) 1 NC_008148.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: nph:NP6216A N-methylhydantoinase (ATP-hydrolyzing) B 2; 5-oxoprolinase 1719594 4116653 Rxyl_1695 Rubrobacter xylanophilus DSM 9941 5-oxoprolinase YP_644467.1 1717696 R 266117 CDS YP_644468.1 108804531 4116654 complement(1719600..1721654) 1 NC_008148.1 PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: nph:NP6218A N-methylhydantoinase (ATP-hydrolyzing) A 2; 5-oxoprolinase 1721654 4116654 Rxyl_1696 Rubrobacter xylanophilus DSM 9941 5-oxoprolinase YP_644468.1 1719600 R 266117 CDS YP_644469.1 108804532 4116655 complement(1721695..1722588) 1 NC_008148.1 PFAM: pyruvate carboxyltransferase; KEGG: nar:Saro_0177 pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 1722588 4116655 Rxyl_1697 Rubrobacter xylanophilus DSM 9941 hydroxymethylglutaryl-CoA lyase YP_644469.1 1721695 R 266117 CDS YP_644470.1 108804533 4116656 complement(1722588..1723802) 1 NC_008148.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ccr:CC3562 hypothetical protein; succinyl-CoA:(R)-citramalate CoA-transferase 1723802 4116656 Rxyl_1698 Rubrobacter xylanophilus DSM 9941 succinyl-CoA:(R)-citramalate CoA-transferase YP_644470.1 1722588 R 266117 CDS YP_644471.1 108804534 4116657 1723837..1724115 1 NC_008148.1 hypothetical protein 1724115 4116657 Rxyl_1699 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644471.1 1723837 D 266117 CDS YP_644472.1 108804535 4116658 complement(1724250..1724744) 1 NC_008148.1 PFAM: GntR-like; KEGG: bcl:ABC0546 transcriptional regulator; GntR family transcriptional regulator 1724744 4116658 Rxyl_1700 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_644472.1 1724250 R 266117 CDS YP_644473.1 108804536 4116484 complement(1725000..1726520) 1 NC_008148.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1726520 4116484 Rxyl_1701 Rubrobacter xylanophilus DSM 9941 amidase YP_644473.1 1725000 R 266117 CDS YP_644474.1 108804537 4116485 complement(1726579..1728537) 1 NC_008148.1 PFAM: biotin/lipoyl attachment ATP-dependent carboxylate-amine ligase-like, ATP-grasp Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: rru:Rru_A1941 acyl-CoA carboxylase alpha chain; 3-methylcrotonoyl-CoA carboxylase subunit alpha 1728537 4116485 Rxyl_1702 Rubrobacter xylanophilus DSM 9941 3-methylcrotonoyl-CoA carboxylase subunit alpha YP_644474.1 1726579 R 266117 CDS YP_644475.1 108804538 4116486 complement(1728628..1730235) 1 NC_008148.1 PFAM: carboxyl transferase; KEGG: rso:RSc0269 putative propionyl-CoA carboxylase (beta subunit) protein; propionyl-CoA carboxylase 1730235 4116486 Rxyl_1703 Rubrobacter xylanophilus DSM 9941 propionyl-CoA carboxylase YP_644475.1 1728628 R 266117 CDS YP_644476.1 108804539 4116487 complement(1730232..1731962) 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bpm:BURPS1710b_1709 acetyl-coenzyme A synthetase; AMP-dependent synthetase and ligase 1731962 4116487 Rxyl_1704 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_644476.1 1730232 R 266117 CDS YP_644477.1 108804540 4116488 complement(1732032..1733126) 1 NC_008148.1 KEGG: mbo:Mb0593c PE-PGRS family protein; hypothetical protein 1733126 4116488 Rxyl_1705 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644477.1 1732032 R 266117 CDS YP_644478.1 108804541 4116489 complement(1733302..1733646) 1 NC_008148.1 hypothetical protein 1733646 4116489 Rxyl_1706 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644478.1 1733302 R 266117 CDS YP_644479.1 108804542 4116490 complement(1733643..1734809) 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: sth:STH1571 acyl-CoA dehydrogenase, short-chain specific; butyryl-CoA dehydrogenase 1734809 4116490 Rxyl_1707 Rubrobacter xylanophilus DSM 9941 butyryl-CoA dehydrogenase YP_644479.1 1733643 R 266117 CDS YP_644480.1 108804543 4116491 complement(1734873..1735658) 1 NC_008148.1 PFAM: Conserved TM helix; KEGG: pca:Pcar_0638 hypothetical protein; hypothetical protein 1735658 4116491 Rxyl_1708 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644480.1 1734873 R 266117 CDS YP_644481.1 108804544 4116492 complement(1735683..1735997) 1 NC_008148.1 KEGG: ttj:TTHB212 hypothetical protein; putative transmembrane anti-sigma factor 1735997 4116492 Rxyl_1709 Rubrobacter xylanophilus DSM 9941 putative transmembrane anti-sigma factor YP_644481.1 1735683 R 266117 CDS YP_644482.1 108804545 4116493 complement(1735994..1736494) 1 NC_008148.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: mta:Moth_1843 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 1736494 4116493 Rxyl_1710 Rubrobacter xylanophilus DSM 9941 ECF subfamily RNA polymerase sigma-24 factor YP_644482.1 1735994 R 266117 CDS YP_644483.1 108804546 4116494 1736704..1738665 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dra:DR0460 acetyl-CoA synthase; AMP-dependent synthetase and ligase 1738665 4116494 Rxyl_1711 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_644483.1 1736704 D 266117 CDS YP_644484.1 108804547 4116495 1738737..1740467 1 NC_008148.1 PFAM: beta-lactamase; KEGG: tel:tll2115 probable beta-lactamase; beta-lactamase 1740467 4116495 Rxyl_1712 Rubrobacter xylanophilus DSM 9941 beta-lactamase YP_644484.1 1738737 D 266117 CDS YP_644485.1 108804548 4116496 complement(1740427..1741365) 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: diacylglycerol kinase, catalytic region; KEGG: ade:Adeh_3510 hypothetical protein; hypothetical protein 1741365 4116496 Rxyl_1713 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644485.1 1740427 R 266117 CDS YP_644486.1 108804549 4116497 1741447..1742376 1 NC_008148.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: tbd:Tbd_0081 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase 1742376 4116497 Rxyl_1714 Rubrobacter xylanophilus DSM 9941 2-hydroxy-3-oxopropionate reductase YP_644486.1 1741447 D 266117 CDS YP_644487.1 108804550 4116498 complement(1742408..1743226) 1 NC_008148.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: rba:RB9367 probable IolI protein; xylose isomerase-like protein 1743226 4116498 Rxyl_1715 Rubrobacter xylanophilus DSM 9941 xylose isomerase-like protein YP_644487.1 1742408 R 266117 CDS YP_644488.1 108804551 4116499 complement(1743327..1744844) 1 NC_008148.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH2312 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1744844 4116499 Rxyl_1716 Rubrobacter xylanophilus DSM 9941 methylmalonate-semialdehyde dehydrogenase YP_644488.1 1743327 R 266117 CDS YP_644489.1 108804552 4116500 complement(1744872..1745669) 1 NC_008148.1 PFAM: Myo-inositol catabolism IolB region; KEGG: gka:GK1889 myo-inositol catabolism protein; myo-inositol catabolism IolB region 1745669 4116500 Rxyl_1717 Rubrobacter xylanophilus DSM 9941 myo-inositol catabolism IolB region YP_644489.1 1744872 R 266117 CDS YP_644490.1 108804553 4116501 complement(1745684..1747564) 1 NC_008148.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: sma:SAV7147 putative acetolactate synthase; thiamine pyrophosphate enzyme, central region 1747564 4116501 Rxyl_1718 Rubrobacter xylanophilus DSM 9941 thiamine pyrophosphate enzyme, central region YP_644490.1 1745684 R 266117 CDS YP_644491.1 108804554 4116502 complement(1747617..1748405) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bmb:BruAb1_1337 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein 1748405 4116502 Rxyl_1719 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644491.1 1747617 R 266117 CDS YP_644492.1 108804555 4116503 complement(1748408..1749430) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: mlo:mlr2441 permease protein of sugar ABC transporter; inner-membrane translocator 1749430 4116503 Rxyl_1720 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_644492.1 1748408 R 266117 CDS YP_644493.1 108804556 4116621 complement(1749488..1750477) 1 NC_008148.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bmb:BruAb1_1340 sugar ABC transporter, periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 1750477 4116621 Rxyl_1721 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein/LacI transcriptional regulator YP_644493.1 1749488 R 266117 CDS YP_644494.1 108804557 4116622 complement(1750474..1751373) 1 NC_008148.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: pac:PPA0468 putative myo-inositol catabolism protein; xylose isomerase-like protein 1751373 4116622 Rxyl_1722 Rubrobacter xylanophilus DSM 9941 xylose isomerase-like protein YP_644494.1 1750474 R 266117 CDS YP_644495.1 108804558 4116623 complement(1751370..1752413) 1 NC_008148.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: bur:Bcep18194_A4572 myo-inositol 2-dehydrogenase; myo-inositol 2-dehydrogenase 1752413 4116623 Rxyl_1723 Rubrobacter xylanophilus DSM 9941 myo-inositol 2-dehydrogenase YP_644495.1 1751370 R 266117 CDS YP_644496.1 108804559 4116624 complement(1752453..1753466) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bmb:BruAb1_1340 sugar ABC transporter, periplasmic sugar-binding protein; twin-arginine translocation pathway signal protein 1753466 4116624 Rxyl_1724 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_644496.1 1752453 R 266117 CDS YP_644497.1 108804560 4116625 complement(1753514..1754677) 1 NC_008148.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: gka:GK1898 myo-inositol 2-dehydrogenase; oxidoreductase-like protein 1754677 4116625 Rxyl_1725 Rubrobacter xylanophilus DSM 9941 oxidoreductase-like protein YP_644497.1 1753514 R 266117 CDS YP_644498.1 108804561 4116626 complement(1754670..1755467) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bms:BR1338 short chain dehydrogenase; short chain dehydrogenase 1755467 4116626 Rxyl_1726 Rubrobacter xylanophilus DSM 9941 short chain dehydrogenase YP_644498.1 1754670 R 266117 CDS YP_644499.1 108804562 4116627 complement(1755467..1756462) 1 NC_008148.1 PFAM: Semialdehyde dehydrogenase, NAD - binding oxidoreductase-like Oxidoreductase-like; KEGG: sco:SCO6255 dehydrogenase; oxidoreductase-like protein 1756462 4116627 Rxyl_1727 Rubrobacter xylanophilus DSM 9941 oxidoreductase-like protein YP_644499.1 1755467 R 266117 CDS YP_644500.1 108804563 4116628 complement(1756459..1758396) 1 NC_008148.1 PFAM: PfkB; KEGG: hch:HCH_01160 sugar kinase, ribokinase family; PfkB protein 1758396 4116628 Rxyl_1728 Rubrobacter xylanophilus DSM 9941 PfkB protein YP_644500.1 1756459 R 266117 CDS YP_644501.1 108804564 4116629 complement(1758393..1759583) 1 NC_008148.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: sma:SAV7155 putative oxidoreductase; oxidoreductase-like protein 1759583 4116629 Rxyl_1729 Rubrobacter xylanophilus DSM 9941 oxidoreductase-like protein YP_644501.1 1758393 R 266117 CDS YP_644502.1 108804565 4116630 complement(1759619..1760377) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: sco:SCO6974 GntR-family regulatory protein; GntR family transcriptional regulator 1760377 4116630 Rxyl_1730 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_644502.1 1759619 R 266117 CDS YP_644503.1 108804566 4116631 complement(1760459..1761196) 1 NC_008148.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sth:STH606 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 1761196 4116631 Rxyl_1731 Rubrobacter xylanophilus DSM 9941 glucosamine-6-phosphate isomerase YP_644503.1 1760459 R 266117 CDS YP_644504.1 108804567 4116632 complement(1761193..1761642) 1 NC_008148.1 KEGG: ppr:PBPRA0861 putative PTS system, glucose-specific IIAcomponent; TIGRFAM: PTS system, glucose subfamily, IIA component; PFAM: sugar-specific permease, EIIA 1 domain; PTS system, glucose subfamily, IIA component 1761642 4116632 Rxyl_1732 Rubrobacter xylanophilus DSM 9941 PTS system, glucose subfamily, IIA component YP_644504.1 1761193 R 266117 CDS YP_644505.1 108804568 4116633 complement(1761645..1763135) 1 NC_008148.1 TIGRFAM: Phosphotransferase system, N-acetylglucosamine-specific IIBC component; PFAM: phosphotransferase system PTS, EIIB phosphotransferase system, EIIC; KEGG: bte:BTH_I0450 PTS system, N-acetylglucosamine-specific IIABC component; phosphotransferase system, N-acetylglucosamine-specific IIBC component 1763135 4116633 Rxyl_1733 Rubrobacter xylanophilus DSM 9941 phosphotransferase system, N-acetylglucosamine-specific IIBC component YP_644505.1 1761645 R 266117 CDS YP_644506.1 108804569 4116634 complement(1763219..1764850) 1 NC_008148.1 KEGG: tte:TTE2334 phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme PEP-utilising enzyme, mobile region PEP-utilising enzyme-like; phosphoenolpyruvate--protein phosphotransferase 1764850 4116634 Rxyl_1734 Rubrobacter xylanophilus DSM 9941 phosphoenolpyruvate--protein phosphotransferase YP_644506.1 1763219 R 266117 CDS YP_644507.1 108804570 4116635 complement(1764855..1765115) 1 NC_008148.1 TIGRFAM: Phosphotransferase system, HPr; PFAM: phosphocarrier HPr protein; KEGG: bpn:BPEN_526 PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase; HPrNtr domain-containing protein 1765115 4116635 Rxyl_1735 Rubrobacter xylanophilus DSM 9941 HPrNtr domain-containing protein YP_644507.1 1764855 R 266117 CDS YP_644508.1 108804571 4116636 complement(1765213..1765980) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: pae:PA2554 3-hydroxyacyl-CoA dehydrogenase; short-chain dehydrogenase/reductase SDR 1765980 4116636 Rxyl_1736 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_644508.1 1765213 R 266117 CDS YP_644509.1 108804572 4116637 complement(1766003..1767187) 1 NC_008148.1 PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: jan:Jann_0668 thiolase; thiolase 1767187 4116637 Rxyl_1737 Rubrobacter xylanophilus DSM 9941 thiolase YP_644509.1 1766003 R 266117 CDS YP_644510.1 108804573 4116638 complement(1767184..1768833) 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK1030 long-chain fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 1768833 4116638 Rxyl_1738 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_644510.1 1767184 R 266117 CDS YP_644511.1 108804574 4116639 complement(1768858..1770480) 1 NC_008148.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: vpa:VP0889 putative histidine ammonia-lyase protein; histidine ammonia-lyase 1770480 4116639 Rxyl_1739 Rubrobacter xylanophilus DSM 9941 histidine ammonia-lyase YP_644511.1 1768858 R 266117 CDS YP_644512.1 108804575 4116309 complement(1770592..1771002) 1 NC_008148.1 PFAM: regulatory protein, MarR; KEGG: nfa:nfa19710 putative transcriptional regulator; MarR family transcriptional regulator 1771002 4116309 Rxyl_1740 Rubrobacter xylanophilus DSM 9941 MarR family transcriptional regulator YP_644512.1 1770592 R 266117 CDS YP_644513.1 108804576 4116310 1771101..1771883 1 NC_008148.1 KEGG: eli:ELI_01210 hypothetical protein; hypothetical protein 1771883 4116310 Rxyl_1741 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644513.1 1771101 D 266117 CDS YP_644514.1 108804577 4116311 1771915..1772874 1 NC_008148.1 KEGG: sma:SAV6711 putative ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: ATPase; daunorubicin resistance ABC transporter ATP-binding subunit 1772874 4116311 Rxyl_1742 Rubrobacter xylanophilus DSM 9941 daunorubicin resistance ABC transporter ATP-binding subunit YP_644514.1 1771915 D 266117 CDS YP_644515.1 108804578 4116312 1772877..1773680 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: fra:Francci3_2021 ABC-2; ABC transporter 1773680 4116312 Rxyl_1743 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_644515.1 1772877 D 266117 CDS YP_644516.1 108804579 4116313 complement(1773677..1775443) 1 NC_008148.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: gka:GK1989 adenine deaminase; adenine deaminase 1775443 4116313 Rxyl_1744 Rubrobacter xylanophilus DSM 9941 adenine deaminase YP_644516.1 1773677 R 266117 CDS YP_644517.1 108804580 4116314 complement(1775446..1776453) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: sth:STH985 hypothetical protein; beta-lactamase-like protein 1776453 4116314 Rxyl_1745 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644517.1 1775446 R 266117 CDS YP_644518.1 108804581 4116315 complement(1776450..1777655) 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE2777 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 1777655 4116315 Rxyl_1746 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_644518.1 1776450 R 266117 CDS YP_644519.1 108804582 4116316 complement(1777732..1778397) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: tte:TTE1839 transcriptional regulator; TetR family transcriptional regulator 1778397 4116316 Rxyl_1747 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_644519.1 1777732 R 266117 CDS YP_644520.1 108804583 4116317 complement(1778400..1779176) 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sso:SSO1311 enoyl-CoA hydratase; short chain enoyl-CoA hydratase 1779176 4116317 Rxyl_1748 Rubrobacter xylanophilus DSM 9941 short chain enoyl-CoA hydratase YP_644520.1 1778400 R 266117 CDS YP_644521.1 108804584 4116318 complement(1779196..1780641) 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: mac:MA4079 aldehyde dehydrogenase (NAD(P)+); lactaldehyde dehydrogenase 1780641 4116318 Rxyl_1749 Rubrobacter xylanophilus DSM 9941 lactaldehyde dehydrogenase YP_644521.1 1779196 R 266117 CDS YP_644522.1 108804585 4116319 complement(1780643..1781194) 1 NC_008148.1 KEGG: ttj:TTHA1879 ferripyochelin-binding protein; carbonic anhydrase 1781194 4116319 Rxyl_1750 Rubrobacter xylanophilus DSM 9941 carbonic anhydrase YP_644522.1 1780643 R 266117 CDS YP_644523.1 108804586 4116320 complement(1781319..1782149) 1 NC_008148.1 PFAM: phenylacetic acid catabolic; KEGG: hma:rrnB0249 phenylacetic acid degradation protein PaaC; phenylacetic acid catabolic 1782149 4116320 Rxyl_1752 Rubrobacter xylanophilus DSM 9941 phenylacetic acid catabolic YP_644523.1 1781319 R 266117 CDS YP_644524.1 108804587 4116321 complement(1782146..1782349) 1 NC_008148.1 hypothetical protein 1782349 4116321 Rxyl_1753 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644524.1 1782146 R 266117 CDS YP_644525.1 108804588 4116322 complement(1782359..1782550) 1 NC_008148.1 hypothetical protein 1782550 4116322 Rxyl_1754 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644525.1 1782359 R 266117 CDS YP_644526.1 108804589 4116323 complement(1782551..1782856) 1 NC_008148.1 PFAM: protein of unknown function DUF59; KEGG: gka:GK1994 hypothetical protein; hypothetical protein 1782856 4116323 Rxyl_1755 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644526.1 1782551 R 266117 CDS YP_644527.1 108804590 4116324 complement(1782856..1783803) 1 NC_008148.1 PFAM: phenylacetic acid catabolic; KEGG: gka:GK1995 phenylacetic acid catabolism protein; phenylacetic acid catabolic 1783803 4116324 Rxyl_1756 Rubrobacter xylanophilus DSM 9941 phenylacetic acid catabolic YP_644527.1 1782856 R 266117 CDS YP_644528.1 108804591 4116325 complement(1783859..1784740) 1 NC_008148.1 PFAM: amidohydrolase 2; KEGG: gme:Gmet_2147 amidohydrolase 2; amidohydrolase 2 1784740 4116325 Rxyl_1757 Rubrobacter xylanophilus DSM 9941 amidohydrolase 2 YP_644528.1 1783859 R 266117 CDS YP_644529.1 108804592 4116326 complement(1784744..1785850) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nmu:Nmul_A1473 zinc-containing alcohol dehydrogenase superfamily; zinc-binding alcohol dehydrogenase 1785850 4116326 Rxyl_1758 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_644529.1 1784744 R 266117 CDS YP_644530.1 108804593 4116327 complement(1785867..1787450) 1 NC_008148.1 TIGRFAM: Benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: gme:Gmet_2143 benzoate-CoA ligase family; benzoate-CoA ligase 1787450 4116327 Rxyl_1759 Rubrobacter xylanophilus DSM 9941 benzoate-CoA ligase YP_644530.1 1785867 R 266117 CDS YP_644531.1 108804594 4116328 complement(1787450..1788835) 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: mba:Mbar_A0503 aldehyde dehydrogenase (NAD(P)+); succinate-semialdehyde dehydrogenase (NAD(P)+) 1788835 4116328 Rxyl_1760 Rubrobacter xylanophilus DSM 9941 succinate-semialdehyde dehydrogenase (NAD(P)+) YP_644531.1 1787450 R 266117 CDS YP_644532.1 108804595 4117556 complement(1789034..1790167) 1 NC_008148.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sth:STH214 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 1790167 4117556 Rxyl_1761 Rubrobacter xylanophilus DSM 9941 3-hydroxyacyl-CoA dehydrogenase YP_644532.1 1789034 R 266117 CDS YP_644533.1 108804596 4117557 1790258..1791061 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bld:BLi02140 similar to 3-hydroxbutyryl-CoA dehydratase; RBL01969; short chain enoyl-CoA hydratase 1791061 4117557 Rxyl_1762 Rubrobacter xylanophilus DSM 9941 short chain enoyl-CoA hydratase YP_644533.1 1790258 D 266117 CDS YP_644534.1 108804597 4117558 1791105..1791368 1 NC_008148.1 hypothetical protein 1791368 4117558 Rxyl_1763 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644534.1 1791105 D 266117 CDS YP_644535.1 108804598 4117559 1791377..1792540 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_2994 putative transport protein; major facilitator transporter 1792540 4117559 Rxyl_1764 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644535.1 1791377 D 266117 CDS YP_644536.1 108804599 4117560 1792599..1793945 1 NC_008148.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3443 putative pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase dimerisation region 1793945 4117560 Rxyl_1765 Rubrobacter xylanophilus DSM 9941 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_644536.1 1792599 D 266117 CDS YP_644537.1 108804600 4117561 1793974..1794501 1 NC_008148.1 hypothetical protein 1794501 4117561 Rxyl_1766 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644537.1 1793974 D 266117 CDS YP_644538.1 108804601 4117562 1794597..1796243 1 NC_008148.1 TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region Heavy metal transport/detoxification protein; KEGG: gka:GK3096 mercuric reductase; mercuric reductase MerA 1796243 4117562 Rxyl_1767 Rubrobacter xylanophilus DSM 9941 mercuric reductase MerA YP_644538.1 1794597 D 266117 CDS YP_644539.1 108804602 4117563 1796257..1796829 1 NC_008148.1 PFAM: alkylmercury lyase; KEGG: sep:SE0086 organomercurial lyase; alkylmercury lyase 1796829 4117563 Rxyl_1768 Rubrobacter xylanophilus DSM 9941 alkylmercury lyase YP_644539.1 1796257 D 266117 CDS YP_644540.1 108804603 4117564 1796929..1797489 1 NC_008148.1 PFAM: alkylmercury lyase; KEGG: sep:SE0086 organomercurial lyase; alkylmercury lyase 1797489 4117564 Rxyl_1769 Rubrobacter xylanophilus DSM 9941 alkylmercury lyase YP_644540.1 1796929 D 266117 CDS YP_644541.1 108804604 4117565 1797530..1797907 1 NC_008148.1 PFAM: regulatory protein, ArsR; KEGG: sto:ST1076 hypothetical transcriptional regulator; ArsR family transcriptional regulator 1797907 4117565 Rxyl_1770 Rubrobacter xylanophilus DSM 9941 ArsR family transcriptional regulator YP_644541.1 1797530 D 266117 CDS YP_644542.1 108804605 4117566 1797997..1798491 1 NC_008148.1 hypothetical protein 1798491 4117566 Rxyl_1771 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644542.1 1797997 D 266117 CDS YP_644543.1 108804606 4117567 1798533..1798844 1 NC_008148.1 hypothetical protein 1798844 4117567 Rxyl_1772 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644543.1 1798533 D 266117 CDS YP_644544.1 108804607 4117568 1798841..1799410 1 NC_008148.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: sth:STH2552 thiol-disulfide isomerase and thioredoxins; redoxin 1799410 4117568 Rxyl_1773 Rubrobacter xylanophilus DSM 9941 redoxin YP_644544.1 1798841 D 266117 CDS YP_644545.1 108804608 4117569 1799407..1800168 1 NC_008148.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: dps:DP3099 hypothetical protein; cytochrome c biogenesis protein, transmembrane region 1800168 4117569 Rxyl_1774 Rubrobacter xylanophilus DSM 9941 cytochrome c biogenesis protein, transmembrane region YP_644545.1 1799407 D 266117 CDS YP_644546.1 108804609 4117570 1800213..1800677 1 NC_008148.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: tvo:TVN0419 bacterioferritin comigratory protein; redoxin 1800677 4117570 Rxyl_1775 Rubrobacter xylanophilus DSM 9941 redoxin YP_644546.1 1800213 D 266117 CDS YP_644547.1 108804610 4117571 complement(1800649..1801326) 1 NC_008148.1 PFAM: amino acid-binding ACT; KEGG: mka:MK0609 predicted metabolic regulator containing the ACT domain; amino acid-binding protein 1801326 4117571 Rxyl_1776 Rubrobacter xylanophilus DSM 9941 amino acid-binding protein YP_644547.1 1800649 R 266117 CDS YP_644548.1 108804611 4117572 complement(1801371..1802555) 1 NC_008148.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 1802555 4117572 Rxyl_1777 Rubrobacter xylanophilus DSM 9941 alkanesulfonate monooxygenase YP_644548.1 1801371 R 266117 CDS YP_644549.1 108804612 4117573 complement(1802591..1803949) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: reu:Reut_C6090 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter 1803949 4117573 Rxyl_1778 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644549.1 1802591 R 266117 CDS YP_644550.1 108804613 4117574 complement(1803946..1805370) 1 NC_008148.1 KEGG: mca:MCA1184 hypothetical protein; hypothetical protein 1805370 4117574 Rxyl_1779 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644550.1 1803946 R 266117 CDS YP_644551.1 108804614 4117322 complement(1805367..1805825) 1 NC_008148.1 PFAM: GTP cyclohydrolase II; KEGG: sma:SAV6904 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II 1805825 4117322 Rxyl_1780 Rubrobacter xylanophilus DSM 9941 GTP cyclohydrolase II YP_644551.1 1805367 R 266117 CDS YP_644552.1 108804615 4117323 complement(1805822..1806361) 1 NC_008148.1 PFAM: flavin reductase-like, FMN-binding; KEGG: sco:SCO5092 actinorhodin polyketide putative dimerase; flavin reductase-like protein 1806361 4117323 Rxyl_1781 Rubrobacter xylanophilus DSM 9941 flavin reductase-like protein YP_644552.1 1805822 R 266117 CDS YP_644553.1 108804616 4117324 complement(1806423..1806758) 1 NC_008148.1 hypothetical protein 1806758 4117324 Rxyl_1782 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644553.1 1806423 R 266117 CDS YP_644554.1 108804617 4117325 complement(1806755..1807411) 1 NC_008148.1 PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: oih:OB3146 NADH-dependent FMN reductase; NADPH-dependent FMN reductase 1807411 4117325 Rxyl_1783 Rubrobacter xylanophilus DSM 9941 NADPH-dependent FMN reductase YP_644554.1 1806755 R 266117 CDS YP_644555.1 108804618 4117326 complement(1807411..1808592) 1 NC_008148.1 PFAM: luciferase-like; KEGG: bte:BTH_II1790 luciferase-like monooxygenase; luciferase-like protein 1808592 4117326 Rxyl_1784 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_644555.1 1807411 R 266117 CDS YP_644556.1 108804619 4117327 complement(1808619..1808831) 1 NC_008148.1 PFAM: ubiquitin-associated; KEGG: mta:Moth_1033 translation elongation factor Ts; ubiquitin-associated protein 1808831 4117327 Rxyl_1785 Rubrobacter xylanophilus DSM 9941 ubiquitin-associated protein YP_644556.1 1808619 R 266117 CDS YP_644557.1 108804620 4117328 1809184..1809981 1 NC_008148.1 PFAM: Formamidopyrimidine-DNA glycolase; KEGG: sru:SRU_0462 formamidopyrimidine-DNA glycosylase; DNA-formamidopyrimidine glycosylase 1809981 4117328 Rxyl_1786 Rubrobacter xylanophilus DSM 9941 DNA-formamidopyrimidine glycosylase YP_644557.1 1809184 D 266117 CDS YP_644558.1 108804621 4117329 1809982..1810572 1 NC_008148.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: sme:SMb21448 putative DNA polymerase related protein; uracil-DNA glycosylase superfamily protein 1810572 4117329 Rxyl_1787 Rubrobacter xylanophilus DSM 9941 uracil-DNA glycosylase superfamily protein YP_644558.1 1809982 D 266117 CDS YP_644559.1 108804622 4117330 1810731..1811552 1 NC_008148.1 PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase 1811552 4117330 Rxyl_1788 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_644559.1 1810731 D 266117 CDS YP_644560.1 108804623 4117331 1811549..1812082 1 NC_008148.1 TIGRFAM: YbhB and YbcL; PFAM: PEBP; KEGG: pho:PH1269 hypothetical protein; PBP family phospholipid-binding protein 1812082 4117331 Rxyl_1789 Rubrobacter xylanophilus DSM 9941 PBP family phospholipid-binding protein YP_644560.1 1811549 D 266117 CDS YP_644561.1 108804624 4117332 complement(1812127..1816410) 1 NC_008148.1 KEGG: mhu:Mhun_1511 hypothetical protein; superfamily I DNA/RNA helicase 1816410 4117332 Rxyl_1790 Rubrobacter xylanophilus DSM 9941 superfamily I DNA/RNA helicase YP_644561.1 1812127 R 266117 CDS YP_644562.1 108804625 4117333 complement(1816394..1818505) 1 NC_008148.1 KEGG: noc:Noc_2196 adenine-specific DNA methylase containing a Zn-ribbon-like; adenine-specific DNA methylase 1818505 4117333 Rxyl_1791 Rubrobacter xylanophilus DSM 9941 adenine-specific DNA methylase YP_644562.1 1816394 R 266117 CDS YP_644563.1 108804626 4117334 complement(1818507..1819103) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: bcl:ABC0634 transcriptional regulator, TetR family; TetR family transcriptional regulator 1819103 4117334 Rxyl_1792 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_644563.1 1818507 R 266117 CDS YP_644564.1 108804627 4117335 1819249..1819878 1 NC_008148.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_3027 putative reductase; reduced coenzyme F420:NADP oxidoreductase 1819878 4117335 Rxyl_1793 Rubrobacter xylanophilus DSM 9941 reduced coenzyme F420:NADP oxidoreductase YP_644564.1 1819249 D 266117 CDS YP_644565.1 108804628 4117336 1819904..1820791 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bsu:BG11852 similar to unknown proteins from B. subtilis; glyoxalase/bleomycin resistance protein/dioxygenase 1820791 4117336 Rxyl_1794 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_644565.1 1819904 D 266117 CDS YP_644566.1 108804629 4117337 complement(1820847..1821185) 1 NC_008148.1 PFAM: Na+/H+ antiporter subunit; KEGG: tma:TM1207 putative multicomponent Na+:H+ antiporter subunit G; Na+/H+ antiporter subunit 1821185 4117337 Rxyl_1795 Rubrobacter xylanophilus DSM 9941 Na+/H+ antiporter subunit YP_644566.1 1820847 R 266117 CDS YP_644567.1 108804630 4117338 complement(1821185..1821451) 1 NC_008148.1 PFAM: multiple resistance and pH regulation protein F; KEGG: tcx:Tcr_0059 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 1821451 4117338 Rxyl_1796 Rubrobacter xylanophilus DSM 9941 multiple resistance and pH regulation protein F YP_644567.1 1821185 R 266117 CDS YP_644568.1 108804631 4117339 complement(1821471..1821983) 1 NC_008148.1 PFAM: cation antiporter; KEGG: sme:SMc00055 putative cation efflux system protein; cation antiporter 1821983 4117339 Rxyl_1797 Rubrobacter xylanophilus DSM 9941 cation antiporter YP_644568.1 1821471 R 266117 CDS YP_644569.1 108804632 4117340 complement(1821980..1823389) 1 NC_008148.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bha:BH1316 Na+/H+ antiporter; NADH dehydrogenase (quinone) 1823389 4117340 Rxyl_1798 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (quinone) YP_644569.1 1821980 R 266117 CDS YP_644570.1 108804633 4117341 complement(1823386..1823823) 1 NC_008148.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: bha:BH1317 Na+/H+ antiporter; NADH-ubiquinone oxidoreductase subunit 4L 1823823 4117341 Rxyl_1799 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone oxidoreductase subunit 4L YP_644570.1 1823386 R 266117 CDS YP_644571.1 108804634 4117244 complement(1823820..1826645) 1 NC_008148.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I) Na+/H+ antiporter MnhB subunit-related protein; KEGG: tbd:Tbd_0497 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1826645 4117244 Rxyl_1800 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (quinone) YP_644571.1 1823820 R 266117 CDS YP_644572.1 108804635 4117245 complement(1827069..1828988) 1 NC_008148.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: hma:pNG6019 cadmium transporting P-type ATPase; heavy metal translocating P-type ATPase 1828988 4117245 Rxyl_1801 Rubrobacter xylanophilus DSM 9941 heavy metal translocating P-type ATPase YP_644572.1 1827069 R 266117 CDS YP_644573.1 108804636 4117246 complement(1829044..1829259) 1 NC_008148.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cgb:cg1328 putative copper chaperone; heavy metal transport/detoxification protein 1829259 4117246 Rxyl_1802 Rubrobacter xylanophilus DSM 9941 heavy metal transport/detoxification protein YP_644573.1 1829044 R 266117 CDS YP_644574.1 108804637 4117247 complement(1829382..1830131) 1 NC_008148.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: cef:CE1525 putative transcription regulator; Crp/FNR family transcriptional regulator 1830131 4117247 Rxyl_1803 Rubrobacter xylanophilus DSM 9941 Crp/FNR family transcriptional regulator YP_644574.1 1829382 R 266117 CDS YP_644575.1 108804638 4117248 1830277..1830588 1 NC_008148.1 PFAM: protein of unknown function DUF77; KEGG: mst:Msp_0693 hypothetical protein; hypothetical protein 1830588 4117248 Rxyl_1804 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644575.1 1830277 D 266117 CDS YP_644576.1 108804639 4117249 complement(1830667..1832241) 1 NC_008148.1 KEGG: mta:Moth_0594 metal dependent phosphohydrolase; TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain metal-dependent phosphohydrolase, 7TM intracellular region; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1832241 4117249 Rxyl_1805 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_644576.1 1830667 R 266117 CDS YP_644577.1 108804640 4117250 complement(1832373..1834328) 1 NC_008148.1 KEGG: tfu:Tfu_2895 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular; SMART: ATPase; ATP-dependent metalloprotease FtsH 1834328 4117250 Rxyl_1806 Rubrobacter xylanophilus DSM 9941 ATP-dependent metalloprotease FtsH YP_644577.1 1832373 R 266117 CDS YP_644578.1 108804641 4117251 complement(1834377..1834979) 1 NC_008148.1 KEGG: tth:TTC1218 transcriptional regulator; hypothetical protein 1834979 4117251 Rxyl_1807 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644578.1 1834377 R 266117 CDS YP_644579.1 108804642 4117252 complement(1834987..1835451) 1 NC_008148.1 hypothetical protein 1835451 4117252 Rxyl_1808 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644579.1 1834987 R 266117 CDS YP_644580.1 108804643 4117253 complement(1835445..1835840) 1 NC_008148.1 hypothetical protein 1835840 4117253 Rxyl_1809 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644580.1 1835445 R 266117 CDS YP_644581.1 108804644 4117254 complement(1835864..1836133) 1 NC_008148.1 hypothetical protein 1836133 4117254 Rxyl_1810 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644581.1 1835864 R 266117 CDS YP_644582.1 108804645 4117255 complement(1836328..1836957) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: mpa:MAP4291c hypothetical protein; TetR family transcriptional regulator 1836957 4117255 Rxyl_1811 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_644582.1 1836328 R 266117 CDS YP_644583.1 108804646 4117256 complement(1837186..1837827) 1 NC_008148.1 PFAM: Ferritin and Dps; KEGG: rpa:RPA1274 possible Dps protein family starvation-inducible DNA-binding protein; Ferritin and Dps 1837827 4117256 Rxyl_1812 Rubrobacter xylanophilus DSM 9941 Ferritin and Dps YP_644583.1 1837186 R 266117 CDS YP_644584.1 108804647 4117257 complement(1838353..1839267) 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit 1839267 4117257 Rxyl_1813 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_644584.1 1838353 R 266117 CDS YP_644585.1 108804648 4117258 complement(1839627..1840106) 1 NC_008148.1 KEGG: reu:Reut_B4087 cupin region; hypothetical protein 1840106 4117258 Rxyl_1814 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644585.1 1839627 R 266117 CDS YP_644586.1 108804649 4117259 complement(1840174..1840392) 1 NC_008148.1 hypothetical protein 1840392 4117259 Rxyl_1815 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644586.1 1840174 R 266117 CDS YP_644587.1 108804650 4117260 complement(1840423..1840854) 1 NC_008148.1 hypothetical protein 1840854 4117260 Rxyl_1816 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644587.1 1840423 R 266117 CDS YP_644588.1 108804651 4117261 1841024..1842214 1 NC_008148.1 KEGG: pho:PH0137 hypothetical protein; hypothetical protein 1842214 4117261 Rxyl_1817 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644588.1 1841024 D 266117 CDS YP_644589.1 108804652 4117262 1842381..1843640 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: fra:Francci3_3470 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 1843640 4117262 Rxyl_1818 Rubrobacter xylanophilus DSM 9941 D-amino-acid dehydrogenase YP_644589.1 1842381 D 266117 CDS YP_644590.1 108804653 4117458 1843888..1844436 1 NC_008148.1 PFAM: UspA; KEGG: bte:BTH_II1567 universal stress protein family; hypothetical protein 1844436 4117458 Rxyl_1819 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644590.1 1843888 D 266117 CDS YP_644591.1 108804654 4117459 complement(1845085..1845996) 1 NC_008148.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sco:SCO5994 integral membrane cytochrome biogenesis protein; cytochrome c biogenesis protein, transmembrane region 1845996 4117459 Rxyl_1821 Rubrobacter xylanophilus DSM 9941 cytochrome c biogenesis protein, transmembrane region YP_644591.1 1845085 R 266117 CDS YP_644592.1 108804655 4117460 complement(1845989..1846681) 1 NC_008148.1 PFAM: DSBA oxidoreductase; KEGG: sco:SCO5993 hypothetical protein; DSBA oxidoreductase 1846681 4117460 Rxyl_1822 Rubrobacter xylanophilus DSM 9941 DSBA oxidoreductase YP_644592.1 1845989 R 266117 CDS YP_644593.1 108804656 4117461 complement(1846735..1848444) 1 NC_008148.1 KEGG: cdi:DIP2171 hypothetical protein; hypothetical protein 1848444 4117461 Rxyl_1823 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644593.1 1846735 R 266117 CDS YP_644594.1 108804657 4117462 complement(1848575..1848934) 1 NC_008148.1 hypothetical protein 1848934 4117462 Rxyl_1824 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644594.1 1848575 R 266117 CDS YP_644595.1 108804658 4117463 1849066..1849902 1 NC_008148.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gsu:GSU2958 thiol:disulfide interchange protein, putative; cytochrome c biogenesis protein, transmembrane region 1849902 4117463 Rxyl_1825 Rubrobacter xylanophilus DSM 9941 cytochrome c biogenesis protein, transmembrane region YP_644595.1 1849066 D 266117 CDS YP_644596.1 108804659 4117464 complement(1850004..1851377) 1 NC_008148.1 PFAM: beta-lactamase-like Rhodanese-like; KEGG: gsu:GSU2309 metallo-beta-lactamase family protein; beta-lactamase-like protein 1851377 4117464 Rxyl_1826 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_644596.1 1850004 R 266117 CDS YP_644597.1 108804660 4117465 complement(1851382..1851789) 1 NC_008148.1 PFAM: protein of unknown function DUF302; KEGG: hma:pNG6027 hypothetical protein; hypothetical protein 1851789 4117465 Rxyl_1827 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644597.1 1851382 R 266117 CDS YP_644598.1 108804661 4117466 complement(1851820..1852038) 1 NC_008148.1 hypothetical protein 1852038 4117466 Rxyl_1828 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644598.1 1851820 R 266117 CDS YP_644599.1 108804662 4117467 1852413..1853189 1 NC_008148.1 PFAM: protein of unknown function DUF81; KEGG: cef:CE0317 hypothetical protein; hypothetical protein 1853189 4117467 Rxyl_1829 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644599.1 1852413 D 266117 CDS YP_644600.1 108804663 4117468 1853688..1855223 1 NC_008148.1 PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase; multicopper oxidase, type 3 1855223 4117468 Rxyl_1830 Rubrobacter xylanophilus DSM 9941 multicopper oxidase, type 3 YP_644600.1 1853688 D 266117 CDS YP_644601.1 108804664 4117469 1855315..1855665 1 NC_008148.1 TIGRFAM: thioredoxin; PFAM: glutaredoxin Thioredoxin domain; KEGG: mta:Moth_0927 thioredoxin; thioredoxin 1855665 4117469 Rxyl_1831 Rubrobacter xylanophilus DSM 9941 thioredoxin YP_644601.1 1855315 D 266117 CDS YP_644602.1 108804665 4117470 1855662..1856273 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: chy:CHY_0552 hypothetical protein; type 11 methyltransferase 1856273 4117470 Rxyl_1832 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_644602.1 1855662 D 266117 CDS YP_644603.1 108804666 4117471 complement(1857606..1858514) 1 NC_008148.1 KEGG: mta:Moth_1737 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 1858514 4117471 Rxyl_1835 Rubrobacter xylanophilus DSM 9941 DNA adenine methylase YP_644603.1 1857606 R 266117 CDS YP_644604.1 108804667 4117472 complement(1858549..1859874) 1 NC_008148.1 KEGG: mma:MM0197 hypothetical protein; hypothetical protein 1859874 4117472 Rxyl_1836 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644604.1 1858549 R 266117 CDS YP_644605.1 108804668 4117473 complement(1859888..1861981) 1 NC_008148.1 KEGG: bfr:BF0638 hypothetical protein; hypothetical protein 1861981 4117473 Rxyl_1837 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644605.1 1859888 R 266117 CDS YP_644606.1 108804669 4117474 complement(1862119..1862439) 1 NC_008148.1 hypothetical protein 1862439 4117474 Rxyl_1838 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644606.1 1862119 R 266117 CDS YP_644607.1 108804670 4117475 complement(1862533..1862802) 1 NC_008148.1 KEGG: bte:BTH_I2730 plasmid related protein; plasmid-like protein 1862802 4117475 Rxyl_1839 Rubrobacter xylanophilus DSM 9941 plasmid-like protein YP_644607.1 1862533 R 266117 CDS YP_644608.1 108804671 4117476 complement(1862802..1863341) 1 NC_008148.1 PFAM: zinc finger, SWIM-type; SWIM-type zinc finger domain-containing protein 1863341 4117476 Rxyl_1840 Rubrobacter xylanophilus DSM 9941 SWIM-type zinc finger domain-containing protein YP_644608.1 1862802 R 266117 CDS YP_644609.1 108804672 4117477 complement(1864579..1865031) 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ctc:CTC02427 putative crotonase; short chain enoyl-CoA hydratase 1865031 4117477 Rxyl_1841 Rubrobacter xylanophilus DSM 9941 short chain enoyl-CoA hydratase YP_644609.1 1864579 R 266117 CDS YP_644610.1 108804673 4117400 complement(1865241..1866323) 1 NC_008148.1 PFAM: Thiolase 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; KEGG: mag:amb2989 acetyl-CoA acetyltransferase; acetyl-CoA C-acetyltransferase 1866323 4117400 Rxyl_1842 Rubrobacter xylanophilus DSM 9941 acetyl-CoA C-acetyltransferase YP_644610.1 1865241 R 266117 CDS YP_644611.1 108804674 4117401 complement(1867222..1867398) 1 NC_008148.1 hypothetical protein 1867398 4117401 Rxyl_1844 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644611.1 1867222 R 266117 CDS YP_644612.1 108804675 4117402 complement(1867573..1868895) 1 NC_008148.1 KEGG: mma:MM0676 coenzyme F390 synthetase; phenylacetate-CoA ligase 1868895 4117402 Rxyl_1845 Rubrobacter xylanophilus DSM 9941 phenylacetate-CoA ligase YP_644612.1 1867573 R 266117 CDS YP_644613.1 108804676 4117403 complement(1868909..1869817) 1 NC_008148.1 KEGG: eba:c1A97 putative subunit of acetophenone carboxylase; hypothetical protein 1869817 4117403 Rxyl_1846 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644613.1 1868909 R 266117 CDS YP_644614.1 108804677 4117404 complement(1869819..1871879) 1 NC_008148.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: eba:c1A100 possible subunit of acetophenone carboxylase; hydantoinase B/oxoprolinase 1871879 4117404 Rxyl_1847 Rubrobacter xylanophilus DSM 9941 hydantoinase B/oxoprolinase YP_644614.1 1869819 R 266117 CDS YP_644615.1 108804678 4117405 complement(1871896..1874076) 1 NC_008148.1 PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: eba:c1A102 possible subunit of acetophenone carboxylase; 5-oxoprolinase 1874076 4117405 Rxyl_1848 Rubrobacter xylanophilus DSM 9941 5-oxoprolinase YP_644615.1 1871896 R 266117 CDS YP_644616.1 108804679 4117406 complement(1874060..1874431) 1 NC_008148.1 KEGG: eba:c1A200 possible subunit of acetophenone carboxylase; putative subunit of acetophenone carboxylase 1874431 4117406 Rxyl_1849 Rubrobacter xylanophilus DSM 9941 putative subunit of acetophenone carboxylase YP_644616.1 1874060 R 266117 CDS YP_644617.1 108804680 4117407 complement(1874433..1876376) 1 NC_008148.1 PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: eba:c1A105 possible subunit of acetophenone carboxylase; hydantoinase/oxoprolinase 1876376 4117407 Rxyl_1850 Rubrobacter xylanophilus DSM 9941 hydantoinase/oxoprolinase YP_644617.1 1874433 R 266117 CDS YP_644618.1 108804681 4117408 complement(1876471..1877820) 1 NC_008148.1 KEGG: mta:Moth_0513 phenylacetate--CoA ligase; phenylacetate-CoA ligase 1877820 4117408 Rxyl_1851 Rubrobacter xylanophilus DSM 9941 phenylacetate-CoA ligase YP_644618.1 1876471 R 266117 CDS YP_644619.1 108804682 4117409 complement(1877841..1878557) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pca:Pcar_2500 transcriptional regulator-like; GntR family transcriptional regulator 1878557 4117409 Rxyl_1852 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_644619.1 1877841 R 266117 CDS YP_644620.1 108804683 4117410 complement(1880156..1881433) 1 NC_008148.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 1881433 4117410 Rxyl_1854 Rubrobacter xylanophilus DSM 9941 allantoate amidohydrolase YP_644620.1 1880156 R 266117 CDS YP_644621.1 108804684 4117411 complement(1881436..1881861) 1 NC_008148.1 PFAM: Endoribonuclease L-PSP; KEGG: cps:CPS_2046 endoribonuclease, L-PSP family; endoribonuclease L-PSP 1881861 4117411 Rxyl_1855 Rubrobacter xylanophilus DSM 9941 endoribonuclease L-PSP YP_644621.1 1881436 R 266117 CDS YP_644622.1 108804685 4117412 complement(1881884..1882603) 1 NC_008148.1 PFAM: protein of unknown function DUF1028; KEGG: pae:PA5391 hypothetical protein; hypothetical protein 1882603 4117412 Rxyl_1856 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644622.1 1881884 R 266117 CDS YP_644623.1 108804686 4117413 complement(1882606..1884057) 1 NC_008148.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: cps:CPS_2047 4-hydroxyphenylacetate-3-hydroxylase family protein; 4-hydroxyphenylacetate 3-hydroxylase 1884057 4117413 Rxyl_1857 Rubrobacter xylanophilus DSM 9941 4-hydroxyphenylacetate 3-hydroxylase YP_644623.1 1882606 R 266117 CDS YP_644624.1 108804687 4117414 complement(1884098..1885279) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH flavin reductase-like, FMN-binding GntR-like; KEGG: sth:STH1890 putative oxidoreductase; GntR family transcriptional regulator 1885279 4117414 Rxyl_1858 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_644624.1 1884098 R 266117 CDS YP_644625.1 108804688 4117415 complement(1887627..1887923) 1 NC_008148.1 PFAM: transposase IS3/IS911; KEGG: fra:Francci3_1726 transposase IS3/IS911; transposase IS3/IS911 1887923 4117415 Rxyl_1861 Rubrobacter xylanophilus DSM 9941 transposase IS3/IS911 YP_644625.1 1887627 R 266117 CDS YP_644626.1 108804689 4117416 complement(1888536..1889903) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: yps:YPTB3580 MFS family metabolite symporter; major facilitator transporter 1889903 4117416 Rxyl_1863 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644626.1 1888536 R 266117 CDS YP_644627.1 108804690 4117417 complement(1890362..1891126) 1 NC_008148.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mtc:MT0384.1 hypothetical protein; carbon monoxide dehydrogenase subunit G 1891126 4117417 Rxyl_1865 Rubrobacter xylanophilus DSM 9941 carbon monoxide dehydrogenase subunit G YP_644627.1 1890362 R 266117 CDS YP_644628.1 108804691 4117418 complement(1891143..1891940) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ava:Ava_4328 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1891940 4117418 Rxyl_1866 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_644628.1 1891143 R 266117 CDS YP_644629.1 108804692 4115545 complement(1891997..1893520) 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMa0150 malonyl-CoA synthase; AMP-dependent synthetase and ligase 1893520 4115545 Rxyl_1867 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_644629.1 1891997 R 266117 CDS YP_644630.1 108804693 4115546 complement(1893634..1894335) 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mbo:Mb0929 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1894335 4115546 Rxyl_1868 Rubrobacter xylanophilus DSM 9941 enoyl-CoA hydratase/isomerase YP_644630.1 1893634 R 266117 CDS YP_644631.1 108804694 4115547 complement(1894361..1894765) 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tte:TTE2386 lactoylglutathione lyase and related lyases; methylmalonyl-CoA epimerase 1894765 4115547 Rxyl_1869 Rubrobacter xylanophilus DSM 9941 methylmalonyl-CoA epimerase YP_644631.1 1894361 R 266117 CDS YP_644632.1 108804695 4115548 complement(1894762..1895415) 1 NC_008148.1 PFAM: putative cyclase; KEGG: tfu:Tfu_1722 conserved hypothetical protein; putative cyclase 1895415 4115548 Rxyl_1870 Rubrobacter xylanophilus DSM 9941 putative cyclase YP_644632.1 1894762 R 266117 CDS YP_644633.1 108804696 4115549 1895543..1896406 1 NC_008148.1 PFAM: molybdopterin dehydrogenase, FAD-binding CO dehydrogenase flavoprotein-like; KEGG: rpb:RPB_3094 carbon-monoxide dehydrogenase; molybdopterin dehydrogenase protein 1896406 4115549 Rxyl_1871 Rubrobacter xylanophilus DSM 9941 molybdopterin dehydrogenase protein YP_644633.1 1895543 D 266117 CDS YP_644634.1 108804697 4115550 1896396..1898783 1 NC_008148.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: reu:Reut_B3790 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead:aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1898783 4115550 Rxyl_1872 Rubrobacter xylanophilus DSM 9941 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_644634.1 1896396 D 266117 CDS YP_644635.1 108804698 4115551 1898780..1899355 1 NC_008148.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: gka:GKP18 carbon monoxide dehydrogenase small chain; (2Fe-2S)-binding protein 1899355 4115551 Rxyl_1873 Rubrobacter xylanophilus DSM 9941 (2Fe-2S)-binding protein YP_644635.1 1898780 D 266117 CDS YP_644636.1 108804699 4115552 1899352..1901679 1 NC_008148.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpb:RPB_3111 carbon-monoxide dehydrogenase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 1901679 4115552 Rxyl_1874 Rubrobacter xylanophilus DSM 9941 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_644636.1 1899352 D 266117 CDS YP_644637.1 108804700 4115553 complement(1901726..1903105) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: dra:DRA0271 sugar transporter, putative; major facilitator transporter 1903105 4115553 Rxyl_1875 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644637.1 1901726 R 266117 CDS YP_644638.1 108804701 4115554 complement(1903165..1903911) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: cps:CPS_4142 transcriptional regulator, GntR family; GntR family transcriptional regulator 1903911 4115554 Rxyl_1876 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_644638.1 1903165 R 266117 CDS YP_644639.1 108804702 4115555 complement(1903915..1905075) 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE2777 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 1905075 4115555 Rxyl_1877 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_644639.1 1903915 R 266117 CDS YP_644640.1 108804703 4115556 1905494..1906885 1 NC_008148.1 PFAM: Amidase; KEGG: nfa:nfa12060 putative amidase; aspartyl/glutamyl-tRNA amidotransferase subunit A 1906885 4115556 Rxyl_1878 Rubrobacter xylanophilus DSM 9941 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_644640.1 1905494 D 266117 CDS YP_644641.1 108804704 4115557 complement(1907130..1907504) 1 NC_008148.1 hypothetical protein 1907504 4115557 Rxyl_1879 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644641.1 1907130 R 266117 CDS YP_644642.1 108804705 4115558 1907668..1907991 1 NC_008148.1 hypothetical protein 1907991 4115558 Rxyl_1880 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644642.1 1907668 D 266117 CDS YP_644643.1 108804706 4115559 1908057..1908707 1 NC_008148.1 hypothetical protein 1908707 4115559 Rxyl_1881 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644643.1 1908057 D 266117 CDS YP_644644.1 108804707 4115560 1908704..1909234 1 NC_008148.1 hypothetical protein 1909234 4115560 Rxyl_1882 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644644.1 1908704 D 266117 CDS YP_644645.1 108804708 4115561 1909295..1909576 1 NC_008148.1 hypothetical protein 1909576 4115561 Rxyl_1883 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644645.1 1909295 D 266117 CDS YP_644646.1 108804709 4115562 complement(1909547..1909888) 1 NC_008148.1 hypothetical protein 1909888 4115562 Rxyl_1884 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644646.1 1909547 R 266117 CDS YP_644647.1 108804710 4115563 complement(1909885..1910115) 1 NC_008148.1 hypothetical protein 1910115 4115563 Rxyl_1885 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644647.1 1909885 R 266117 CDS YP_644648.1 108804711 4115564 complement(1910105..1910347) 1 NC_008148.1 hypothetical protein 1910347 4115564 Rxyl_1886 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644648.1 1910105 R 266117 CDS YP_644649.1 108804712 4115565 complement(1910939..1911280) 1 NC_008148.1 hypothetical protein 1911280 4115565 Rxyl_1887 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644649.1 1910939 R 266117 CDS YP_644650.1 108804713 4115566 1911410..1912381 1 NC_008148.1 PFAM: PfkB; KEGG: ret:RHE_PC00098 probable ribokinase protein; PfkB 1912381 4115566 Rxyl_1888 Rubrobacter xylanophilus DSM 9941 PfkB YP_644650.1 1911410 D 266117 CDS YP_644651.1 108804714 4115567 1912464..1913507 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: mlo:mll1013 permease protein of sugar ABC transporter; inner-membrane translocator 1913507 4115567 Rxyl_1889 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_644651.1 1912464 D 266117 CDS YP_644652.1 108804715 4115568 1913509..1914564 1 NC_008148.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0765 Periplasmic sugar-binding proteins; periplasmic binding protein/LacI transcriptional regulator 1914564 4115568 Rxyl_1890 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein/LacI transcriptional regulator YP_644652.1 1913509 D 266117 CDS YP_644653.1 108804716 4115569 1914568..1916067 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_2172 ABC transporter-like; ABC transporter-like protein 1916067 4115569 Rxyl_1891 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644653.1 1914568 D 266117 CDS YP_644654.1 108804717 4115570 1916064..1916528 1 NC_008148.1 PFAM: RbsD or FucU transport; KEGG: yps:YPTB3609 putative carbohydrate transport protein; transport protein RbsD/FucU 1916528 4115570 Rxyl_1892 Rubrobacter xylanophilus DSM 9941 transport protein RbsD/FucU YP_644654.1 1916064 D 266117 CDS YP_644655.1 108804718 4115571 1916600..1917226 1 NC_008148.1 KEGG: stm:STM3072 putative inner membrane protein; signal transduction histidine kinase LytS 1917226 4115571 Rxyl_1893 Rubrobacter xylanophilus DSM 9941 signal transduction histidine kinase LytS YP_644655.1 1916600 D 266117 CDS YP_644656.1 108804719 4115572 1917295..1918029 1 NC_008148.1 PFAM: cobalt transport protein; KEGG: sth:STH2157 cobalt ABC transporter permease protein; cobalt transport protein 1918029 4115572 Rxyl_1894 Rubrobacter xylanophilus DSM 9941 cobalt transport protein YP_644656.1 1917295 D 266117 CDS YP_644657.1 108804720 4115573 1918026..1919750 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mta:Moth_0707 ABC transporter related; ABC transporter-like protein 1919750 4115573 Rxyl_1895 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644657.1 1918026 D 266117 CDS YP_644658.1 108804721 4115574 complement(1919795..1920730) 1 NC_008148.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sso:SSO2243 purine nucleosidase, putative (IunH-2); inosine/uridine-preferring nucleoside hydrolase 1920730 4115574 Rxyl_1896 Rubrobacter xylanophilus DSM 9941 inosine/uridine-preferring nucleoside hydrolase YP_644658.1 1919795 R 266117 CDS YP_644659.1 108804722 4115575 complement(1920763..1922100) 1 NC_008148.1 hypothetical protein 1922100 4115575 Rxyl_1897 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644659.1 1920763 R 266117 CDS YP_644660.1 108804723 4115576 complement(1922280..1923071) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ecs:ECs4349 putative GntR family regulatory protein; GntR family transcriptional regulator 1923071 4115576 Rxyl_1898 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_644660.1 1922280 R 266117 CDS YP_644661.1 108804724 4115577 complement(1925062..1925814) 1 NC_008148.1 hypothetical protein 1925814 4115577 Rxyl_1901 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644661.1 1925062 R 266117 CDS YP_644662.1 108804725 4115578 1926205..1926456 1 NC_008148.1 hypothetical protein 1926456 4115578 Rxyl_1902 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644662.1 1926205 D 266117 CDS YP_644663.1 108804726 4115579 1926631..1927056 1 NC_008148.1 hypothetical protein 1927056 4115579 Rxyl_1903 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644663.1 1926631 D 266117 CDS YP_644664.1 108804727 4115580 1928501..1929265 1 NC_008148.1 PFAM: regulatory proteins, IclR; KEGG: sma:SAV5141 putative differentiation regulon (IclR-family transcriptional regulator); IclR family transcriptional regulator 1929265 4115580 Rxyl_1905 Rubrobacter xylanophilus DSM 9941 IclR family transcriptional regulator YP_644664.1 1928501 D 266117 CDS YP_644665.1 108804728 4115581 complement(1929330..1930484) 1 NC_008148.1 PFAM: peptidase M24; KEGG: pub:SAR11_0853 X-Pro dipeptidase; peptidase M24 1930484 4115581 Rxyl_1906 Rubrobacter xylanophilus DSM 9941 peptidase M24 YP_644665.1 1929330 R 266117 CDS YP_644666.1 108804729 4115582 complement(1930754..1932118) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: sco:SCO2336 putative integral membrane transport protein; general substrate transporter 1932118 4115582 Rxyl_1907 Rubrobacter xylanophilus DSM 9941 general substrate transporter YP_644666.1 1930754 R 266117 CDS YP_644667.1 108804730 4115583 complement(1932229..1932903) 1 NC_008148.1 hypothetical protein 1932903 4115583 Rxyl_1908 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644667.1 1932229 R 266117 CDS YP_644668.1 108804731 4115525 complement(1932923..1933282) 1 NC_008148.1 hypothetical protein 1933282 4115525 Rxyl_1909 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644668.1 1932923 R 266117 CDS YP_644669.1 108804732 4115526 complement(1933445..1934191) 1 NC_008148.1 KEGG: tth:TTC1216 transposase; hypothetical protein 1934191 4115526 Rxyl_1910 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644669.1 1933445 R 266117 CDS YP_644670.1 108804733 4115527 complement(1934362..1934625) 1 NC_008148.1 hypothetical protein 1934625 4115527 Rxyl_1911 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644670.1 1934362 R 266117 CDS YP_644671.1 108804734 4115528 complement(1934636..1935607) 1 NC_008148.1 PFAM: nuclease (SNase-like) membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_A0032 membrane-bound metal-dependent hydrolase; nuclease 1935607 4115528 Rxyl_1912 Rubrobacter xylanophilus DSM 9941 nuclease YP_644671.1 1934636 R 266117 CDS YP_644672.1 108804735 4115529 complement(1935617..1936246) 1 NC_008148.1 KEGG: noc:Noc_A0035 hypothetical protein; hypothetical protein 1936246 4115529 Rxyl_1913 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644672.1 1935617 R 266117 CDS YP_644673.1 108804736 4115530 complement(1936317..1936565) 1 NC_008148.1 hypothetical protein 1936565 4115530 Rxyl_1914 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644673.1 1936317 R 266117 CDS YP_644674.1 108804737 4115531 complement(1936574..1936849) 1 NC_008148.1 hypothetical protein 1936849 4115531 Rxyl_1915 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644674.1 1936574 R 266117 CDS YP_644675.1 108804738 4115532 complement(1936846..1937193) 1 NC_008148.1 hypothetical protein 1937193 4115532 Rxyl_1916 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644675.1 1936846 R 266117 CDS YP_644676.1 108804739 4115533 complement(1937246..1939525) 1 NC_008148.1 KEGG: mta:Moth_1807 hypothetical protein; hypothetical protein 1939525 4115533 Rxyl_1917 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644676.1 1937246 R 266117 CDS YP_644677.1 108804740 4115534 complement(1939538..1940167) 1 NC_008148.1 KEGG: ade:Adeh_0244 LigA; SOS-response transcriptional repressor, LexA 1940167 4115534 Rxyl_1918 Rubrobacter xylanophilus DSM 9941 SOS-response transcriptional repressor, LexA YP_644677.1 1939538 R 266117 CDS YP_644678.1 108804741 4115535 1940261..1940914 1 NC_008148.1 KEGG: sma:SAV1204 putative IS630 family transposase; hypothetical protein 1940914 4115535 Rxyl_1919 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644678.1 1940261 D 266117 CDS YP_644679.1 108804742 4115536 1940914..1941510 1 NC_008148.1 hypothetical protein 1941510 4115536 Rxyl_1920 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644679.1 1940914 D 266117 CDS YP_644680.1 108804743 4115537 1941641..1942063 1 NC_008148.1 hypothetical protein 1942063 4115537 Rxyl_1921 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644680.1 1941641 D 266117 CDS YP_644681.1 108804744 4115538 1942060..1945314 1 NC_008148.1 KEGG: sth:STH1885 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like; DNA polymerase III subunit alpha 1945314 4115538 Rxyl_1922 Rubrobacter xylanophilus DSM 9941 DNA polymerase III subunit alpha YP_644681.1 1942060 D 266117 CDS YP_644682.1 108804745 4115539 1945348..1945545 1 NC_008148.1 TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; KEGG: cjr:CJE0545 DNA binding domain, excisionase family; phage transcriptional regulator AlpA 1945545 4115539 Rxyl_1923 Rubrobacter xylanophilus DSM 9941 phage transcriptional regulator AlpA YP_644682.1 1945348 D 266117 CDS YP_644683.1 108804746 4115540 complement(1945542..1945955) 1 NC_008148.1 hypothetical protein 1945955 4115540 Rxyl_1924 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644683.1 1945542 R 266117 CDS YP_644684.1 108804747 4115541 complement(1945990..1946268) 1 NC_008148.1 hypothetical protein 1946268 4115541 Rxyl_1925 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644684.1 1945990 R 266117 CDS YP_644685.1 108804748 4115542 complement(1946253..1946477) 1 NC_008148.1 hypothetical protein 1946477 4115542 Rxyl_1926 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644685.1 1946253 R 266117 CDS YP_644686.1 108804749 4115543 1946710..1947849 1 NC_008148.1 PFAM: phage integrase; KEGG: mta:Moth_1796 phage integrase; phage integrase 1947849 4115543 Rxyl_1927 Rubrobacter xylanophilus DSM 9941 phage integrase YP_644686.1 1946710 D 266117 CDS YP_644687.1 108804750 4115544 complement(1948079..1948870) 1 NC_008148.1 KEGG: plt:Plut_0297 hypothetical protein; hypothetical protein 1948870 4115544 Rxyl_1928 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644687.1 1948079 R 266117 CDS YP_644688.1 108804751 4115779 complement(1948863..1951274) 1 NC_008148.1 KEGG: ade:Adeh_1447 ATP-dependent protease, putative; ATP-dependent protease 1951274 4115779 Rxyl_1929 Rubrobacter xylanophilus DSM 9941 ATP-dependent protease YP_644688.1 1948863 R 266117 CDS YP_644689.1 108804752 4115780 1951391..1951888 1 NC_008148.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: chy:CHY_2559 low molecular weight protein-tyrosine-phosphatase; protein tyrosine phosphatase 1951888 4115780 Rxyl_1930 Rubrobacter xylanophilus DSM 9941 protein tyrosine phosphatase YP_644689.1 1951391 D 266117 CDS YP_644690.1 108804753 4115781 complement(1951882..1953360) 1 NC_008148.1 PFAM: sugar transferase; KEGG: noc:Noc_1508 undecaprenyl-phosphate galactosephosphotransferase; undecaprenyl-phosphate galactosephosphotransferase 1953360 4115781 Rxyl_1931 Rubrobacter xylanophilus DSM 9941 undecaprenyl-phosphate galactosephosphotransferase YP_644690.1 1951882 R 266117 CDS YP_644691.1 108804754 4115782 1953631..1954365 1 NC_008148.1 PFAM: polysaccharide deacetylase; KEGG: sma:SAV5355 putative polysaccharide deacetylase; polysaccharide deacetylase 1954365 4115782 Rxyl_1932 Rubrobacter xylanophilus DSM 9941 polysaccharide deacetylase YP_644691.1 1953631 D 266117 CDS YP_644692.1 108804755 4115783 complement(1954307..1955350) 1 NC_008148.1 KEGG: sme:SMb21237 putative enzyme, C-terminal domain similar to sulfotransferase protein; sulfotransferase-like protein 1955350 4115783 Rxyl_1933 Rubrobacter xylanophilus DSM 9941 sulfotransferase-like protein YP_644692.1 1954307 R 266117 CDS YP_644693.1 108804756 4115784 1955435..1956517 1 NC_008148.1 KEGG: bld:BLi02095 YwoF; hypothetical protein 1956517 4115784 Rxyl_1934 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644693.1 1955435 D 266117 CDS YP_644694.1 108804757 4115785 1956607..1957683 1 NC_008148.1 KEGG: mma:MM0066 hypothetical protein; hypothetical protein 1957683 4115785 Rxyl_1935 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644694.1 1956607 D 266117 CDS YP_644695.1 108804758 4115786 complement(1957680..1958567) 1 NC_008148.1 PFAM: sulfotransferase; KEGG: gvi:glr0465 unknown protein; sulfotransferase 1958567 4115786 Rxyl_1936 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_644695.1 1957680 R 266117 CDS YP_644696.1 108804759 4115787 complement(1958564..1959802) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1304 glycosyl transferase, group 1; group 1 glycosyl transferase 1959802 4115787 Rxyl_1937 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_644696.1 1958564 R 266117 CDS YP_644697.1 108804760 4115788 complement(1959799..1961004) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0660 predicted glycosyltransferase; group 1 glycosyl transferase 1961004 4115788 Rxyl_1938 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_644697.1 1959799 R 266117 CDS YP_644698.1 108804761 4115789 complement(1960995..1962149) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0658 predicted glycosyltransferase; group 1 glycosyl transferase 1962149 4115789 Rxyl_1939 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_644698.1 1960995 R 266117 CDS YP_644699.1 108804762 4115790 complement(1962146..1963507) 1 NC_008148.1 PFAM: O-antigen polymerase; KEGG: dvu:DVUA0048 exopolysaccharide production protein, putative; O-antigen polymerase 1963507 4115790 Rxyl_1940 Rubrobacter xylanophilus DSM 9941 O-antigen polymerase YP_644699.1 1962146 R 266117 CDS YP_644700.1 108804763 4115791 complement(1963504..1964466) 1 NC_008148.1 KEGG: rba:RB10430 hypothetical protein; hypothetical protein 1964466 4115791 Rxyl_1941 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644700.1 1963504 R 266117 CDS YP_644701.1 108804764 4115792 complement(1964463..1965857) 1 NC_008148.1 PFAM: polysaccharide biosynthesis protein; KEGG: rru:Rru_A3720 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1965857 4115792 Rxyl_1942 Rubrobacter xylanophilus DSM 9941 polysaccharide biosynthesis protein YP_644701.1 1964463 R 266117 CDS YP_644702.1 108804765 4115793 complement(1965885..1966604) 1 NC_008148.1 KEGG: gka:GK3326 capsular polysaccharide biosynthesis protein; protein-tyrosine kinase 1966604 4115793 Rxyl_1943 Rubrobacter xylanophilus DSM 9941 protein-tyrosine kinase YP_644702.1 1965885 R 266117 CDS YP_644703.1 108804766 4115794 complement(1966609..1967370) 1 NC_008148.1 PFAM: lipopolysaccharide biosynthesis; KEGG: bce:BC5278 chain length regulator (capsular polysaccharide biosynthesis); lipopolysaccharide biosynthesis protein 1967370 4115794 Rxyl_1944 Rubrobacter xylanophilus DSM 9941 lipopolysaccharide biosynthesis protein YP_644703.1 1966609 R 266117 CDS YP_644704.1 108804767 4115795 1967689..1968762 1 NC_008148.1 KEGG: ava:Ava_0292 parallel beta-helix repeat; hypothetical protein 1968762 4115795 Rxyl_1945 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644704.1 1967689 D 266117 CDS YP_644705.1 108804768 4115796 complement(1968777..1969679) 1 NC_008148.1 KEGG: vvu:VV12891 hypothetical protein; hypothetical protein 1969679 4115796 Rxyl_1946 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644705.1 1968777 R 266117 CDS YP_644706.1 108804769 4115797 complement(1969743..1970582) 1 NC_008148.1 PFAM: tyrosinase; KEGG: nmu:Nmul_A2156 tyrosinase/peptidase; tyrosinase 1970582 4115797 Rxyl_1947 Rubrobacter xylanophilus DSM 9941 tyrosinase YP_644706.1 1969743 R 266117 CDS YP_644707.1 108804770 4115740 complement(1970589..1970951) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 1970951 4115740 Rxyl_1948 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_644707.1 1970589 R 266117 CDS YP_644708.1 108804771 4115741 1971020..1971748 1 NC_008148.1 hypothetical protein 1971748 4115741 Rxyl_1949 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644708.1 1971020 D 266117 CDS YP_644709.1 108804772 4115742 1971745..1972917 1 NC_008148.1 KEGG: sco:SCO2713 hypothetical protein; hypothetical protein 1972917 4115742 Rxyl_1950 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644709.1 1971745 D 266117 CDS YP_644710.1 108804773 4115743 1972914..1973711 1 NC_008148.1 PFAM: formyl transferase-like; KEGG: mlo:mlr1236 hypothetical protein; formyl transferase-like protein 1973711 4115743 Rxyl_1951 Rubrobacter xylanophilus DSM 9941 formyl transferase-like protein YP_644710.1 1972914 D 266117 CDS YP_644711.1 108804774 4115744 1973708..1975669 1 NC_008148.1 PFAM: O-antigen polymerase; KEGG: mta:Moth_1253 O-antigen polymerase; O-antigen polymerase 1975669 4115744 Rxyl_1952 Rubrobacter xylanophilus DSM 9941 O-antigen polymerase YP_644711.1 1973708 D 266117 CDS YP_644712.1 108804775 4115745 complement(1975641..1976267) 1 NC_008148.1 PFAM: regulatory protein, LuxR sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: eca:ECA2028 nitrate/nitrite response regulator; two component LuxR family transcriptional regulator 1976267 4115745 Rxyl_1953 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_644712.1 1975641 R 266117 CDS YP_644713.1 108804776 4115746 1976524..1976862 1 NC_008148.1 hypothetical protein 1976862 4115746 Rxyl_1954 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644713.1 1976524 D 266117 CDS YP_644714.1 108804777 4115747 complement(1976873..1977679) 1 NC_008148.1 PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: ttj:TTHB248 transcriptional regulator, IclR family; IclR family transcriptional regulator 1977679 4115747 Rxyl_1955 Rubrobacter xylanophilus DSM 9941 IclR family transcriptional regulator YP_644714.1 1976873 R 266117 CDS YP_644715.1 108804778 4115748 1977870..1978910 1 NC_008148.1 PFAM: amidohydrolase 2; KEGG: fra:Francci3_2516 amidohydrolase 2; amidohydrolase 2 1978910 4115748 Rxyl_1956 Rubrobacter xylanophilus DSM 9941 amidohydrolase 2 YP_644715.1 1977870 D 266117 CDS YP_644716.1 108804779 4115749 1978907..1979611 1 NC_008148.1 PFAM: protein of unknown function DUF59; KEGG: fra:Francci3_2515 protein of unknown function DUF59; hypothetical protein 1979611 4115749 Rxyl_1957 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644716.1 1978907 D 266117 CDS YP_644717.1 108804780 4115750 1979608..1980669 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: fra:Francci3_2514 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase GroES-like protein 1980669 4115750 Rxyl_1958 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_644717.1 1979608 D 266117 CDS YP_644718.1 108804781 4115751 complement(1980674..1981594) 1 NC_008148.1 PFAM: peptidase S58, DmpA; KEGG: sth:STH1900 hypothetical protein; peptidase S58, DmpA 1981594 4115751 Rxyl_1959 Rubrobacter xylanophilus DSM 9941 peptidase S58, DmpA YP_644718.1 1980674 R 266117 CDS YP_644719.1 108804782 4115752 complement(1981633..1982469) 1 NC_008148.1 KEGG: gme:Gmet_2320 PSP1; hypothetical protein 1982469 4115752 Rxyl_1960 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644719.1 1981633 R 266117 CDS YP_644720.1 108804783 4115753 complement(1982472..1983551) 1 NC_008148.1 KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 1983551 4115753 Rxyl_1961 Rubrobacter xylanophilus DSM 9941 DNA polymerase III subunit delta' YP_644720.1 1982472 R 266117 CDS YP_644721.1 108804784 4115754 complement(1983548..1984159) 1 NC_008148.1 PFAM: thymidylate kinase; KEGG: dra:DR0111 dTMP kinase; thymidylate kinase 1984159 4115754 Rxyl_1962 Rubrobacter xylanophilus DSM 9941 thymidylate kinase YP_644721.1 1983548 R 266117 CDS YP_644722.1 108804785 4115755 complement(1984195..1984959) 1 NC_008148.1 PFAM: glutamine amidotransferase class-I peptidase C26; KEGG: sth:STH2933 putative glutamine amidotransferase; peptidase C26 1984959 4115755 Rxyl_1963 Rubrobacter xylanophilus DSM 9941 peptidase C26 YP_644722.1 1984195 R 266117 CDS YP_644723.1 108804786 4115756 complement(1985130..1987238) 1 NC_008148.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1987238 4115756 Rxyl_1964 Rubrobacter xylanophilus DSM 9941 DNA topoisomerase I YP_644723.1 1985130 R 266117 CDS YP_644724.1 108804787 4115757 complement(1987265..1988227) 1 NC_008148.1 PFAM: conserved hypothetical protein 374; KEGG: mba:Mbar_A1413 hypothetical protein; hypothetical protein 1988227 4115757 Rxyl_1965 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644724.1 1987265 R 266117 CDS YP_644725.1 108804788 4115758 complement(1988224..1989129) 1 NC_008148.1 PFAM: UbiA prenyltransferase; KEGG: mta:Moth_1995 UbiA prenyltransferase; UbiA prenyltransferase 1989129 4115758 Rxyl_1966 Rubrobacter xylanophilus DSM 9941 UbiA prenyltransferase YP_644725.1 1988224 R 266117 CDS YP_644726.1 108804789 4115759 1989210..1990124 1 NC_008148.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: gka:GK2877 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphtoate prenyltransferase 1990124 4115759 Rxyl_1967 Rubrobacter xylanophilus DSM 9941 1,4-dihydroxy-2-naphtoate prenyltransferase YP_644726.1 1989210 D 266117 CDS YP_644727.1 108804790 4115721 complement(1990121..1990933) 1 NC_008148.1 TIGRFAM: Sec-independent protein translocase TatC; PFAM: Sec-independent periplasmic protein translocase; KEGG: chy:CHY_0863 sec-independent protein translocase protein TatC; Sec-independent protein translocase TatC 1990933 4115721 Rxyl_1968 Rubrobacter xylanophilus DSM 9941 Sec-independent protein translocase TatC YP_644727.1 1990121 R 266117 CDS YP_644728.1 108804791 4115722 complement(1990980..1991258) 1 NC_008148.1 TIGRFAM: twin-arginine translocation protein, TatA/E family; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: aae:aq_064c putative sec-independent protein translocase protein; twin arginine-targeting protein translocase 1991258 4115722 Rxyl_1969 Rubrobacter xylanophilus DSM 9941 twin arginine-targeting protein translocase YP_644728.1 1990980 R 266117 CDS YP_644729.1 108804792 4115723 complement(1991320..1991958) 1 NC_008148.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: nar:Saro_0302 TPR repeat protein; tetratricopeptide repeat-containing protein 1991958 4115723 Rxyl_1970 Rubrobacter xylanophilus DSM 9941 tetratricopeptide repeat-containing protein YP_644729.1 1991320 R 266117 CDS YP_644730.1 108804793 4115724 complement(1992009..1993259) 1 NC_008148.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: sma:SAV6652 putative N-ethylammeline chlorohydrolase; amidohydrolase 1993259 4115724 Rxyl_1971 Rubrobacter xylanophilus DSM 9941 amidohydrolase YP_644730.1 1992009 R 266117 CDS YP_644731.1 108804794 4115725 complement(1993261..1994175) 1 NC_008148.1 PFAM: Polyprenyl synthetase; KEGG: eba:ebA4512 polyprenyl synthetase, gene: IspB or NE1915; trans-hexaprenyltranstransferase 1994175 4115725 Rxyl_1972 Rubrobacter xylanophilus DSM 9941 trans-hexaprenyltranstransferase YP_644731.1 1993261 R 266117 CDS YP_644732.1 108804795 4115726 complement(1994222..1994959) 1 NC_008148.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: mta:Moth_1280 ubiquinone/menaquinone biosynthesis methyltransferases; demethylmenaquinone methyltransferase 1994959 4115726 Rxyl_1973 Rubrobacter xylanophilus DSM 9941 demethylmenaquinone methyltransferase YP_644732.1 1994222 R 266117 CDS YP_644733.1 108804796 4115727 complement(1994956..1995372) 1 NC_008148.1 hypothetical protein 1995372 4115727 Rxyl_1974 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644733.1 1994956 R 266117 CDS YP_644734.1 108804797 4115728 complement(1995369..1996688) 1 NC_008148.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mta:Moth_1244 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde 2,1-aminomutase 1996688 4115728 Rxyl_1975 Rubrobacter xylanophilus DSM 9941 glutamate-1-semialdehyde 2,1-aminomutase YP_644734.1 1995369 R 266117 CDS YP_644735.1 108804798 4115729 complement(1996711..1997691) 1 NC_008148.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1997691 4115729 Rxyl_1976 Rubrobacter xylanophilus DSM 9941 delta-aminolevulinic acid dehydratase YP_644735.1 1996711 R 266117 CDS YP_644736.1 108804799 4115730 complement(1997697..1999238) 1 NC_008148.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Uroporphyrinogen III synthase HEM4; KEGG: mta:Moth_1248 uroporphyrin-III C-methyltransferase; uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase 1999238 4115730 Rxyl_1977 Rubrobacter xylanophilus DSM 9941 uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase YP_644736.1 1997697 R 266117 CDS YP_644737.1 108804800 4115731 complement(1999235..2000152) 1 NC_008148.1 TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: mta:Moth_1249 porphobilinogen deaminase; porphobilinogen deaminase 2000152 4115731 Rxyl_1978 Rubrobacter xylanophilus DSM 9941 porphobilinogen deaminase YP_644737.1 1999235 R 266117 CDS YP_644738.1 108804801 4115732 complement(2000152..2001420) 1 NC_008148.1 PFAM: glutamyl-tRNA reductase Shikimate/quinate 5-dehydrogenase; KEGG: gsu:GSU3284 glutamyl-tRNA reductase; glutamyl-tRNA reductase 2001420 4115732 Rxyl_1979 Rubrobacter xylanophilus DSM 9941 glutamyl-tRNA reductase YP_644738.1 2000152 R 266117 CDS YP_644739.1 108804802 4115733 complement(2001417..2002001) 1 NC_008148.1 TIGRFAM: siroheme synthase, N-terminal domain; KEGG: pca:Pcar_3066 siroheme synthase, N-terminal domain protein; precorrin-2 dehydrogenase 2002001 4115733 Rxyl_1980 Rubrobacter xylanophilus DSM 9941 precorrin-2 dehydrogenase YP_644739.1 2001417 R 266117 CDS YP_644740.1 108804803 4115734 complement(2002087..2002548) 1 NC_008148.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: eli:ELI_06520 molybdopterin cofactor biosynthesis MoaC region; GTP cyclohydrolase subunit MoaC 2002548 4115734 Rxyl_1981 Rubrobacter xylanophilus DSM 9941 GTP cyclohydrolase subunit MoaC YP_644740.1 2002087 R 266117 CDS YP_644741.1 108804804 4115735 complement(2002739..2004577) 1 NC_008148.1 TIGRFAM: selenocysteine-specific translation elongation factor Small GTP-binding protein domain; PFAM: protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: sth:STH1073 selenocysteine-specific elongation factor; selenocysteine-specific translation elongation factor SelB 2004577 4115735 Rxyl_1982 Rubrobacter xylanophilus DSM 9941 selenocysteine-specific translation elongation factor SelB YP_644741.1 2002739 R 266117 CDS YP_644742.1 108804805 4115736 complement(2004570..2005937) 1 NC_008148.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 2005937 4115736 Rxyl_1983 Rubrobacter xylanophilus DSM 9941 selenocysteine synthase YP_644742.1 2004570 R 266117 CDS YP_644743.1 108804806 4115737 2006027..2006329 1 NC_008148.1 hypothetical protein 2006329 4115737 Rxyl_1984 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644743.1 2006027 D 266117 CDS YP_644744.1 108804807 4115738 complement(2006326..2006649) 1 NC_008148.1 hypothetical protein 2006649 4115738 Rxyl_1985 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644744.1 2006326 R 266117 CDS YP_644745.1 108804808 4115739 complement(2006651..2007673) 1 NC_008148.1 KEGG: sco:SCO3407 hypothetical protein; hypothetical protein 2007673 4115739 Rxyl_1986 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644745.1 2006651 R 266117 CDS YP_644746.1 108804809 4117575 2007762..2007977 1 NC_008148.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dvu:DVU1042 twin-arginine translocation protein TatB; sec-independent translocation protein mttA/Hcf106 2007977 4117575 Rxyl_1987 Rubrobacter xylanophilus DSM 9941 sec-independent translocation protein mttA/Hcf106 YP_644746.1 2007762 D 266117 CDS YP_644747.1 108804810 4117576 complement(2007974..2008861) 1 NC_008148.1 KEGG: pca:Pcar_2013 HD domain protein; TIGRFAM: uncharacterized domain HDIG; PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2008861 4117576 Rxyl_1988 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_644747.1 2007974 R 266117 CDS YP_644748.1 108804811 4117577 complement(2008956..2009810) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK2121 ABC transporter (permease); binding-protein-dependent transport system inner membrane protein 2009810 4117577 Rxyl_1989 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_644748.1 2008956 R 266117 CDS YP_644749.1 108804812 4117578 complement(2009817..2010737) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttj:TTHA0355 ABC transporter, permease protein, MalFG family; binding-protein-dependent transport system inner membrane protein 2010737 4117578 Rxyl_1990 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_644749.1 2009817 R 266117 CDS YP_644750.1 108804813 4117579 complement(2010769..2012136) 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH1244 putative multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 2012136 4117579 Rxyl_1991 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_644750.1 2010769 R 266117 CDS YP_644751.1 108804814 4117580 complement(2012189..2013469) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tfu:Tfu_1763 ABC-type sugar transport systems ATPase components; ABC transporter-like protein 2013469 4117580 Rxyl_1992 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644751.1 2012189 R 266117 CDS YP_644752.1 108804815 4117581 complement(2013499..2014659) 1 NC_008148.1 PFAM: glycoside hydrolase, family 3-like; KEGG: tfu:Tfu_2486 beta-N-acetylglucosaminidase (putative secreted protein); glycoside hydrolase family protein 2014659 4117581 Rxyl_1993 Rubrobacter xylanophilus DSM 9941 glycoside hydrolase family protein YP_644752.1 2013499 R 266117 CDS YP_644753.1 108804816 4117582 2014709..2016115 1 NC_008148.1 PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: hal:VNG7093 hypothetical protein; type III restriction enzyme, res subunit 2016115 4117582 Rxyl_1994 Rubrobacter xylanophilus DSM 9941 type III restriction enzyme, res subunit YP_644753.1 2014709 D 266117 CDS YP_644754.1 108804817 4117583 2016117..2017358 1 NC_008148.1 PFAM: protein of unknown function DUF790; KEGG: hal:VNG7092 hypothetical protein; hypothetical protein 2017358 4117583 Rxyl_1995 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644754.1 2016117 D 266117 CDS YP_644755.1 108804818 4117584 2017355..2017804 1 NC_008148.1 hypothetical protein 2017804 4117584 Rxyl_1996 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644755.1 2017355 D 266117 CDS YP_644756.1 108804819 4117585 complement(2018054..2018926) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_B4109 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2018926 4117585 Rxyl_1997 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_644756.1 2018054 R 266117 CDS YP_644757.1 108804820 4117586 complement(2018929..2020179) 1 NC_008148.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 2020179 4117586 Rxyl_1998 Rubrobacter xylanophilus DSM 9941 S-adenosyl-L-homocysteine hydrolase YP_644757.1 2018929 R 266117 CDS YP_644758.1 108804821 4117587 complement(2020219..2021049) 1 NC_008148.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sth:STH2737 glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2021049 4117587 Rxyl_1999 Rubrobacter xylanophilus DSM 9941 glycerophosphoryl diester phosphodiesterase YP_644758.1 2020219 R 266117 CDS YP_644759.1 108804822 4117588 2021088..2021819 1 NC_008148.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: ade:Adeh_0068 lipolytic enzyme, G-D-S-L; lipolytic protein 2021819 4117588 Rxyl_2000 Rubrobacter xylanophilus DSM 9941 lipolytic protein YP_644759.1 2021088 D 266117 CDS YP_644760.1 108804823 4117589 complement(2021797..2024109) 1 NC_008148.1 PFAM: peptidase S45, penicillin amidase; KEGG: ttj:TTHA0024 penicillin acylase II precursor; penicillin amidase 2024109 4117589 Rxyl_2001 Rubrobacter xylanophilus DSM 9941 penicillin amidase YP_644760.1 2021797 R 266117 CDS YP_644761.1 108804824 4117590 complement(2024387..2024611) 1 NC_008148.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: mle:ML0577 protein-export membrane protein secG; protein translocase subunit secG 2024611 4117590 Rxyl_2002 Rubrobacter xylanophilus DSM 9941 protein translocase subunit secG YP_644761.1 2024387 R 266117 CDS YP_644762.1 108804825 4117591 complement(2024651..2025421) 1 NC_008148.1 PFAM: triosephosphate isomerase; KEGG: mta:Moth_0264 triosephosphate isomerase; triosephosphate isomerase 2025421 4117591 Rxyl_2003 Rubrobacter xylanophilus DSM 9941 triosephosphate isomerase YP_644762.1 2024651 R 266117 CDS YP_644763.1 108804826 4117592 complement(2025425..2026603) 1 NC_008148.1 PFAM: phosphoglycerate kinase; KEGG: tma:TM0689 phosphoglycerate kinase / triose-phosphate isomerase; phosphoglycerate kinase 2026603 4117592 Rxyl_2004 Rubrobacter xylanophilus DSM 9941 phosphoglycerate kinase YP_644763.1 2025425 R 266117 CDS YP_644764.1 108804827 4117593 complement(2026679..2027680) 1 NC_008148.1 KEGG: tfu:Tfu_2017 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2027680 4117593 Rxyl_2005 Rubrobacter xylanophilus DSM 9941 glyceraldehyde-3-phosphate dehydrogenase YP_644764.1 2026679 R 266117 CDS YP_644765.1 108804828 4117594 complement(2027743..2028423) 1 NC_008148.1 PFAM: protein of unknown function DUF199; KEGG: ctc:CTC02493 hypothetical protein; hypothetical protein 2028423 4117594 Rxyl_2006 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644765.1 2027743 R 266117 CDS YP_644766.1 108804829 4115897 complement(2028599..2029564) 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: mta:Moth_0259 hypothetical protein; hypothetical protein 2029564 4115897 Rxyl_2007 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644766.1 2028599 R 266117 CDS YP_644767.1 108804830 4115898 complement(2029596..2030555) 1 NC_008148.1 PFAM: glutathione S-transferase-like; KEGG: gvi:glr3374 putative glutathione S-transferase; glutathione S-transferase-like protein 2030555 4115898 Rxyl_2008 Rubrobacter xylanophilus DSM 9941 glutathione S-transferase-like protein YP_644767.1 2029596 R 266117 CDS YP_644768.1 108804831 4115899 complement(2030621..2031538) 1 NC_008148.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: mta:Moth_0258 uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 2031538 4115899 Rxyl_2009 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644768.1 2030621 R 266117 CDS YP_644769.1 108804832 4115900 complement(2031650..2033485) 1 NC_008148.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit-like excinuclease ABC, C subunit-like UvrB/UvrC protein; KEGG: mta:Moth_0256 excinuclease ABC, C subunit; excinuclease ABC subunit C 2033485 4115900 Rxyl_2010 Rubrobacter xylanophilus DSM 9941 excinuclease ABC subunit C YP_644769.1 2031650 R 266117 CDS YP_644770.1 108804833 4115901 complement(2033514..2034149) 1 NC_008148.1 KEGG: eba:ebA1334 carbon-nitrogen hydrolase:apolipoprotein N-acyltransferase; hypothetical protein 2034149 4115901 Rxyl_2011 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644770.1 2033514 R 266117 CDS YP_644771.1 108804834 4115902 complement(2034139..2035638) 1 NC_008148.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: bld:BLi02166 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 2035638 4115902 Rxyl_2012 Rubrobacter xylanophilus DSM 9941 type I phosphodiesterase/nucleotide pyrophosphatase YP_644771.1 2034139 R 266117 CDS YP_644772.1 108804835 4115903 complement(2035678..2037183) 1 NC_008148.1 PFAM: amino acid permease-associated region; KEGG: sma:SAV2243 putative cationic amino acid transporter; amino acid permease-associated protein 2037183 4115903 Rxyl_2013 Rubrobacter xylanophilus DSM 9941 amino acid permease-associated protein YP_644772.1 2035678 R 266117 CDS YP_644773.1 108804836 4115904 complement(2037292..2038245) 1 NC_008148.1 KEGG: ddi:DDB0190122 hypothetical protein; hypothetical protein 2038245 4115904 Rxyl_2014 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644773.1 2037292 R 266117 CDS YP_644774.1 108804837 4115905 2038362..2038823 1 NC_008148.1 hypothetical protein 2038823 4115905 Rxyl_2015 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644774.1 2038362 D 266117 CDS YP_644775.1 108804838 4115906 complement(2038820..2041591) 1 NC_008148.1 KEGG: gka:GK3085 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: ATPase; excinuclease ABC subunit A 2041591 4115906 Rxyl_2016 Rubrobacter xylanophilus DSM 9941 excinuclease ABC subunit A YP_644775.1 2038820 R 266117 CDS YP_644776.1 108804839 4115907 2041814..2043508 1 NC_008148.1 KEGG: mta:Moth_0207 purine catabolism PurC-like; CdaR family transcriptional regulator 2043508 4115907 Rxyl_2017 Rubrobacter xylanophilus DSM 9941 CdaR family transcriptional regulator YP_644776.1 2041814 D 266117 CDS YP_644777.1 108804840 4115908 2043649..2045085 1 NC_008148.1 TIGRFAM: ammonium transporter; PFAM: Rh-like protein/ammonium transporter; KEGG: gka:GK1452 ammonium transporter; ammonium transporter 2045085 4115908 Rxyl_2018 Rubrobacter xylanophilus DSM 9941 ammonium transporter YP_644777.1 2043649 D 266117 CDS YP_644778.1 108804841 4115909 2045193..2045474 1 NC_008148.1 hypothetical protein 2045474 4115909 Rxyl_2019 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644778.1 2045193 D 266117 CDS YP_644779.1 108804842 4115910 2045514..2046326 1 NC_008148.1 PFAM: Abortive infection protein; abortive infection protein 2046326 4115910 Rxyl_2020 Rubrobacter xylanophilus DSM 9941 abortive infection protein YP_644779.1 2045514 D 266117 CDS YP_644780.1 108804843 4115911 complement(2046323..2048200) 1 NC_008148.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2048200 4115911 Rxyl_2021 Rubrobacter xylanophilus DSM 9941 excinuclease ABC subunit B YP_644780.1 2046323 R 266117 CDS YP_644781.1 108804844 4115912 complement(2048313..2048813) 1 NC_008148.1 PFAM: Lytic transglycosylase, catalytic; KEGG: sth:STH852 putative transglycosylase; lytic transglycosylase catalytic subunit 2048813 4115912 Rxyl_2022 Rubrobacter xylanophilus DSM 9941 lytic transglycosylase catalytic subunit YP_644781.1 2048313 R 266117 CDS YP_644782.1 108804845 4115913 complement(2048920..2049540) 1 NC_008148.1 PFAM: Dephospho-CoA kinase; KEGG: pcu:pc0222 putative dephospho-CoA kinase; dephospho-CoA kinase 2049540 4115913 Rxyl_2023 Rubrobacter xylanophilus DSM 9941 dephospho-CoA kinase YP_644782.1 2048920 R 266117 CDS YP_644783.1 108804846 4115914 complement(2049579..2050814) 1 NC_008148.1 PFAM: RNA binding S1; KEGG: tfu:Tfu_1191 RNA binding S1; 30S ribosomal protein S1 2050814 4115914 Rxyl_2024 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S1 YP_644783.1 2049579 R 266117 CDS YP_644784.1 108804847 4115915 complement(2050904..2053435) 1 NC_008148.1 KEGG: sth:STH848 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease; SMART: Helix-hairpin-helix motif, class 2; DNA polymerase I 2053435 4115915 Rxyl_2025 Rubrobacter xylanophilus DSM 9941 DNA polymerase I YP_644784.1 2050904 R 266117 CDS YP_644785.1 108804848 4115838 2053467..2054138 1 NC_008148.1 KEGG: wsu:WS0145 tRNA (guanine-N7-)-methyltransferase; TIGRFAM: conserved hypothetical protein; PFAM: putative methyltransferase Methyltransferase type 11 Methyltransferase type 12; tRNA (guanine-N(7)-)-methyltransferase 2054138 4115838 Rxyl_2026 Rubrobacter xylanophilus DSM 9941 tRNA (guanine-N(7)-)-methyltransferase YP_644785.1 2053467 D 266117 CDS YP_644786.1 108804849 4115839 complement(2054135..2054560) 1 NC_008148.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: pae:PA5329 hypothetical protein; 4-hydroxybenzoyl-CoA thioesterase 2054560 4115839 Rxyl_2027 Rubrobacter xylanophilus DSM 9941 4-hydroxybenzoyl-CoA thioesterase YP_644786.1 2054135 R 266117 CDS YP_644787.1 108804850 4115840 complement(2054624..2055331) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ttj:TTHA1335 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 2055331 4115840 Rxyl_2028 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644787.1 2054624 R 266117 CDS YP_644788.1 108804851 4115841 complement(2055334..2056119) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG; ABC transporter-like protein 2056119 4115841 Rxyl_2029 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644788.1 2055334 R 266117 CDS YP_644789.1 108804852 4115842 complement(2056112..2057269) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP2582 putative ABC transport protein, ATP-binding component; inner-membrane translocator 2057269 4115842 Rxyl_2030 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_644789.1 2056112 R 266117 CDS YP_644790.1 108804853 4115843 complement(2057271..2058236) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: bms:BR1791 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 2058236 4115843 Rxyl_2031 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_644790.1 2057271 R 266117 CDS YP_644791.1 108804854 4115844 complement(2058442..2059698) 1 NC_008148.1 PFAM: Extracellular ligand-binding receptor; KEGG: sco:SCO2008 putative branched chain amino acid binding protein; extracellular ligand-binding receptor 2059698 4115844 Rxyl_2032 Rubrobacter xylanophilus DSM 9941 extracellular ligand-binding receptor YP_644791.1 2058442 R 266117 CDS YP_644792.1 108804855 4115845 2060472..2060762 1 NC_008148.1 hypothetical protein 2060762 4115845 Rxyl_2033 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644792.1 2060472 D 266117 CDS YP_644793.1 108804856 4115846 complement(2061315..2061569) 1 NC_008148.1 hypothetical protein 2061569 4115846 Rxyl_2035 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644793.1 2061315 R 266117 CDS YP_644794.1 108804857 4115847 2063269..2063988 1 NC_008148.1 PFAM: rhodopsin; KEGG: hma:rrnAC3161 bacteriorhodopsin; rhodopsin 2063988 4115847 Rxyl_2037 Rubrobacter xylanophilus DSM 9941 rhodopsin YP_644794.1 2063269 D 266117 CDS YP_644795.1 108804858 4115848 2063981..2065234 1 NC_008148.1 PFAM: FAD dependent oxidoreductase Lycopene beta and epsilon cyclase; KEGG: sco:SCO0191 lycopene cyclase; lycopene beta and epsilon cyclase 2065234 4115848 Rxyl_2038 Rubrobacter xylanophilus DSM 9941 lycopene beta and epsilon cyclase YP_644795.1 2063981 D 266117 CDS YP_644796.1 108804859 4115849 2065236..2066183 1 NC_008148.1 KEGG: nph:NP0650A brp-like protein 2; hypothetical protein 2066183 4115849 Rxyl_2039 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644796.1 2065236 D 266117 CDS YP_644797.1 108804860 4115850 complement(2066252..2066506) 1 NC_008148.1 hypothetical protein 2066506 4115850 Rxyl_2040 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644797.1 2066252 R 266117 CDS YP_644798.1 108804861 4115851 complement(2066496..2069882) 1 NC_008148.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 2069882 4115851 Rxyl_2041 Rubrobacter xylanophilus DSM 9941 pyruvate carboxylase YP_644798.1 2066496 R 266117 CDS YP_644799.1 108804862 4115852 2070001..2070537 1 NC_008148.1 PFAM: Inorganic pyrophosphatase; KEGG: sru:SRU_2000 inorganic pyrophosphatase; inorganic diphosphatase 2070537 4115852 Rxyl_2042 Rubrobacter xylanophilus DSM 9941 inorganic diphosphatase YP_644799.1 2070001 D 266117 CDS YP_644800.1 108804863 4115853 2070595..2070918 1 NC_008148.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mca:MCA0497 pterin-4-alpha-carbinolamine dehydratase; pterin-4-alpha-carbinolamine dehydratase 2070918 4115853 Rxyl_2043 Rubrobacter xylanophilus DSM 9941 pterin-4-alpha-carbinolamine dehydratase YP_644800.1 2070595 D 266117 CDS YP_644801.1 108804864 4115854 complement(2070915..2071490) 1 NC_008148.1 PFAM: nuclease (SNase-like); KEGG: sth:STH2345 micrococcal nuclease-like protein; nuclease 2071490 4115854 Rxyl_2044 Rubrobacter xylanophilus DSM 9941 nuclease YP_644801.1 2070915 R 266117 CDS YP_644802.1 108804865 4115855 complement(2071541..2072113) 1 NC_008148.1 TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI; KEGG: rba:RB4394 proteinase I; peptidase C56, PfpI 2072113 4115855 Rxyl_2045 Rubrobacter xylanophilus DSM 9941 peptidase C56, PfpI YP_644802.1 2071541 R 266117 CDS YP_644803.1 108804866 4115856 complement(2072226..2073599) 1 NC_008148.1 PFAM: glycoside hydrolase, family 1; KEGG: sco:SCO7558 putative beta-glucosidase; beta-galactosidase 2073599 4115856 Rxyl_2046 Rubrobacter xylanophilus DSM 9941 beta-galactosidase YP_644803.1 2072226 R 266117 CDS YP_644804.1 108804867 4115857 complement(2073615..2073911) 1 NC_008148.1 hypothetical protein 2073911 4115857 Rxyl_2047 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644804.1 2073615 R 266117 CDS YP_644805.1 108804868 4115760 complement(2073927..2075579) 1 NC_008148.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sco:SCO3139 putative sodium:solute symporter; SSS family solute/sodium (Na+) symporter 2075579 4115760 Rxyl_2048 Rubrobacter xylanophilus DSM 9941 SSS family solute/sodium (Na+) symporter YP_644805.1 2073927 R 266117 CDS YP_644806.1 108804869 4115761 2075700..2075960 1 NC_008148.1 KEGG: vpa:VP2170 putative transglycosylase associated gene; putative transglycosylase associated protein 2075960 4115761 Rxyl_2049 Rubrobacter xylanophilus DSM 9941 putative transglycosylase associated protein YP_644806.1 2075700 D 266117 CDS YP_644807.1 108804870 4115762 complement(2075984..2076940) 1 NC_008148.1 PFAM: aldo/keto reductase; KEGG: cch:Cag_1232 putative aldo/keto reductase; aldo/keto reductase 2076940 4115762 Rxyl_2050 Rubrobacter xylanophilus DSM 9941 aldo/keto reductase YP_644807.1 2075984 R 266117 CDS YP_644808.1 108804871 4115763 complement(2077026..2080217) 1 NC_008148.1 PFAM: glycoside hydrolase, family 38 glycosyl hydrolases 38-like; KEGG: ret:RHE_PF00487 putative alpha-mannosidase protein; alpha-mannosidase 2080217 4115763 Rxyl_2051 Rubrobacter xylanophilus DSM 9941 alpha-mannosidase YP_644808.1 2077026 R 266117 CDS YP_644809.1 108804872 4115764 2080376..2081947 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_1629 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase 2081947 4115764 Rxyl_2052 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_644809.1 2080376 D 266117 CDS YP_644810.1 108804873 4115765 2081952..2082635 1 NC_008148.1 PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: sma:SAV5929 hypothetical protein; phenazine biosynthesis PhzC/PhzF protein 2082635 4115765 Rxyl_2053 Rubrobacter xylanophilus DSM 9941 phenazine biosynthesis PhzC/PhzF protein YP_644810.1 2081952 D 266117 CDS YP_644811.1 108804874 4115766 2082632..2083426 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb0852 enoyl-CoA hydratase/carnithine racemase; short chain enoyl-CoA hydratase 2083426 4115766 Rxyl_2054 Rubrobacter xylanophilus DSM 9941 short chain enoyl-CoA hydratase YP_644811.1 2082632 D 266117 CDS YP_644812.1 108804875 4115767 2083426..2083746 1 NC_008148.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rba:RB12137 hypothetical protein; ATP-dependent Clp protease adaptor protein ClpS 2083746 4115767 Rxyl_2055 Rubrobacter xylanophilus DSM 9941 ATP-dependent Clp protease adaptor protein ClpS YP_644812.1 2083426 D 266117 CDS YP_644813.1 108804876 4115768 complement(2083939..2085117) 1 NC_008148.1 PFAM: Thiolase; KEGG: sth:STH3011 acetyl-CoA acyltransferase; 3-ketoacyl-CoA thiolase 2085117 4115768 Rxyl_2056 Rubrobacter xylanophilus DSM 9941 3-ketoacyl-CoA thiolase YP_644813.1 2083939 R 266117 CDS YP_644814.1 108804877 4115769 complement(2085128..2087500) 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1210 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; 3-hydroxyacyl-CoA dehydrogenase 2087500 4115769 Rxyl_2057 Rubrobacter xylanophilus DSM 9941 3-hydroxyacyl-CoA dehydrogenase YP_644814.1 2085128 R 266117 CDS YP_644815.1 108804878 4115770 complement(2087497..2087994) 1 NC_008148.1 KEGG: dar:Daro_1551 hypothetical protein; hypothetical protein 2087994 4115770 Rxyl_2058 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644815.1 2087497 R 266117 CDS YP_644816.1 108804879 4115771 complement(2087987..2088370) 1 NC_008148.1 PFAM: transcriptional regulator PadR-like; KEGG: cpe:CPE2510 hypothetical protein; PadR family transcriptional regulator 2088370 4115771 Rxyl_2059 Rubrobacter xylanophilus DSM 9941 PadR family transcriptional regulator YP_644816.1 2087987 R 266117 CDS YP_644817.1 108804880 4115772 complement(2088363..2090141) 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sru:SRU_2380 AMP-binding enzyme, putative; AMP-dependent synthetase and ligase 2090141 4115772 Rxyl_2060 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_644817.1 2088363 R 266117 CDS YP_644818.1 108804881 4115773 2090226..2091440 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE0723 putative glutaryl-CoA dehydrogenase precursor; acyl-CoA dehydrogenase-like protein 2091440 4115773 Rxyl_2061 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_644818.1 2090226 D 266117 CDS YP_644819.1 108804882 4115774 2091577..2092602 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bld:BLi00992 similar to alcohol dehydrogenase; RBL03314; zinc-binding alcohol dehydrogenase 2092602 4115774 Rxyl_2062 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_644819.1 2091577 D 266117 CDS YP_644820.1 108804883 4115775 complement(2092679..2093959) 1 NC_008148.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: gka:GK0676 isocitrate lyase; isocitrate lyase 2093959 4115775 Rxyl_2063 Rubrobacter xylanophilus DSM 9941 isocitrate lyase YP_644820.1 2092679 R 266117 CDS YP_644821.1 108804884 4115776 complement(2094156..2095766) 1 NC_008148.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2095766 4115776 Rxyl_2064 Rubrobacter xylanophilus DSM 9941 malate synthase YP_644821.1 2094156 R 266117 CDS YP_644822.1 108804885 4115777 2096209..2097171 1 NC_008148.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: sth:STH241 LysR family transcriptional regulator; LysR family transcriptional regulator 2097171 4115777 Rxyl_2065 Rubrobacter xylanophilus DSM 9941 LysR family transcriptional regulator YP_644822.1 2096209 D 266117 CDS YP_644823.1 108804886 4115778 complement(2097164..2099134) 1 NC_008148.1 PFAM: acyltransferase 3; KEGG: lin:lin1329 hypothetical protein; acyltransferase 3 2099134 4115778 Rxyl_2066 Rubrobacter xylanophilus DSM 9941 acyltransferase 3 YP_644823.1 2097164 R 266117 CDS YP_644824.1 108804887 4115161 complement(2099319..2100074) 1 NC_008148.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cpe:CPE1877 probable glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2100074 4115161 Rxyl_2067 Rubrobacter xylanophilus DSM 9941 glycerophosphoryl diester phosphodiesterase YP_644824.1 2099319 R 266117 CDS YP_644825.1 108804888 4115162 complement(2100204..2101298) 1 NC_008148.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: pab:PAB2232 multiple sugar transport system ATP-binding protein; ABC transporter-like protein 2101298 4115162 Rxyl_2068 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644825.1 2100204 R 266117 CDS YP_644826.1 108804889 4115163 complement(2101291..2102223) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00137 putative sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2102223 4115163 Rxyl_2069 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_644826.1 2101291 R 266117 CDS YP_644827.1 108804890 4115164 complement(2102242..2103186) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0419 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein 2103186 4115164 Rxyl_2070 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_644827.1 2102242 R 266117 CDS YP_644828.1 108804891 4115165 complement(2103197..2104612) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: tma:TM0418 multiple sugar transport system substrate-binding protein; twin-arginine translocation pathway signal protein 2104612 4115165 Rxyl_2071 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_644828.1 2103197 R 266117 CDS YP_644829.1 108804892 4115166 2104887..2105963 1 NC_008148.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pca:Pcar_0575 3-isopropylmalate dehydrogenase; isocitrate dehydrogenase (NADP) 2105963 4115166 Rxyl_2072 Rubrobacter xylanophilus DSM 9941 isocitrate dehydrogenase (NADP) YP_644829.1 2104887 D 266117 CDS YP_644830.1 108804893 4115167 2105960..2106439 1 NC_008148.1 KEGG: xcb:XC_3980 hypothetical protein; hypothetical protein 2106439 4115167 Rxyl_2073 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644830.1 2105960 D 266117 CDS YP_644831.1 108804894 4115168 complement(2106436..2107296) 1 NC_008148.1 PFAM: aminoglycoside phosphotransferase fructosamine kinase; KEGG: rru:Rru_A3648 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2107296 4115168 Rxyl_2074 Rubrobacter xylanophilus DSM 9941 aminoglycoside phosphotransferase YP_644831.1 2106436 R 266117 CDS YP_644832.1 108804895 4115169 complement(2107286..2107804) 1 NC_008148.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: tcx:Tcr_0702 protein tyrosine phosphatase; protein tyrosine phosphatase 2107804 4115169 Rxyl_2075 Rubrobacter xylanophilus DSM 9941 protein tyrosine phosphatase YP_644832.1 2107286 R 266117 CDS YP_644833.1 108804896 4115170 complement(2107845..2108549) 1 NC_008148.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/FNR family transcriptional regulator 2108549 4115170 Rxyl_2076 Rubrobacter xylanophilus DSM 9941 Crp/FNR family transcriptional regulator YP_644833.1 2107845 R 266117 CDS YP_644834.1 108804897 4115171 2108788..2109120 1 NC_008148.1 hypothetical protein 2109120 4115171 Rxyl_2077 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644834.1 2108788 D 266117 CDS YP_644835.1 108804898 4115172 2109345..2109707 1 NC_008148.1 hypothetical protein 2109707 4115172 Rxyl_2078 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644835.1 2109345 D 266117 CDS YP_644836.1 108804899 4115173 complement(2109899..2110303) 1 NC_008148.1 KEGG: dar:Daro_3966 hydrogenase formation HypD protein; hydrogenase maturation factor-like protein 2110303 4115173 Rxyl_2079 Rubrobacter xylanophilus DSM 9941 hydrogenase maturation factor-like protein YP_644836.1 2109899 R 266117 CDS YP_644837.1 108804900 4115174 2110369..2110602 1 NC_008148.1 KEGG: lxx:Lxx23630 ATP-dependent Clp protease, ATP-binding subunit; ATPase with chaperone activity ATP-binding subunit-like protein 2110602 4115174 Rxyl_2080 Rubrobacter xylanophilus DSM 9941 ATPase with chaperone activity ATP-binding subunit-like protein YP_644837.1 2110369 D 266117 CDS YP_644838.1 108804901 4115175 2110732..2110956 1 NC_008148.1 PFAM: glutaredoxin; KEGG: ade:Adeh_1557 glutaredoxin; glutaredoxin 2110956 4115175 Rxyl_2081 Rubrobacter xylanophilus DSM 9941 glutaredoxin YP_644838.1 2110732 D 266117 CDS YP_644839.1 108804902 4115176 2111063..2112112 1 NC_008148.1 PFAM: phosphofructokinase; KEGG: tfu:Tfu_1037 phosphofructokinase; pyrophosphate-dependent phosphofructokinase 2112112 4115176 Rxyl_2082 Rubrobacter xylanophilus DSM 9941 pyrophosphate-dependent phosphofructokinase YP_644839.1 2111063 D 266117 CDS YP_644840.1 108804903 4115177 2112452..2113123 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bja:bll3318 ABC transporter ATP-binding protein; ABC transporter-like protein 2113123 4115177 Rxyl_2083 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644840.1 2112452 D 266117 CDS YP_644841.1 108804904 4115178 2113120..2113902 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6798 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2113902 4115178 Rxyl_2084 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport systems inner membrane component YP_644841.1 2113120 D 266117 CDS YP_644842.1 108804905 4115179 2113899..2114885 1 NC_008148.1 KEGG: bce:BC0745 hydroxymethylpyrimidine-binding protein; hydroxymethylpyrimidine-binding protein 2114885 4115179 Rxyl_2085 Rubrobacter xylanophilus DSM 9941 hydroxymethylpyrimidine-binding protein YP_644842.1 2113899 D 266117 CDS YP_644843.1 108804906 4115180 complement(2115045..2116007) 1 NC_008148.1 KEGG: ttj:TTHA1767 acetyl-CoA carboxylase carboxyl transferase, alpha subunit (AccA); TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2116007 4115180 Rxyl_2087 Rubrobacter xylanophilus DSM 9941 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_644843.1 2115045 R 266117 CDS YP_644844.1 108804907 4117595 complement(2116007..2116780) 1 NC_008148.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pmt:PMT0534 acetyl-CoA carboxylase, beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2116780 4117595 Rxyl_2088 Rubrobacter xylanophilus DSM 9941 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_644844.1 2116007 R 266117 CDS YP_644845.1 108804908 4117596 complement(2116848..2117639) 1 NC_008148.1 KEGG: mta:Moth_1336 tryptophan synthase, alpha subunit; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain; tryptophan synthase subunit alpha 2117639 4117596 Rxyl_2089 Rubrobacter xylanophilus DSM 9941 tryptophan synthase subunit alpha YP_644845.1 2116848 R 266117 CDS YP_644846.1 108804909 4117597 complement(2117629..2118840) 1 NC_008148.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2118840 4117597 Rxyl_2090 Rubrobacter xylanophilus DSM 9941 tryptophan synthase subunit beta YP_644846.1 2117629 R 266117 CDS YP_644847.1 108804910 4117598 complement(2118824..2119444) 1 NC_008148.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: gsu:GSU2378 N-(5'phosphoribosyl)anthranilate isomerase; phosphoribosylanthranilate isomerase 2119444 4117598 Rxyl_2091 Rubrobacter xylanophilus DSM 9941 phosphoribosylanthranilate isomerase YP_644847.1 2118824 R 266117 CDS YP_644848.1 108804911 4117599 2119663..2121300 1 NC_008148.1 KEGG: tbd:Tbd_1269 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL PAS fold-4 PAS fold; SMART: PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2121300 4117599 Rxyl_2092 Rubrobacter xylanophilus DSM 9941 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_644848.1 2119663 D 266117 CDS YP_644849.1 108804912 4117600 2121757..2122536 1 NC_008148.1 PFAM: EAL; KEGG: cvi:CV1578 probable sensory box/GGDEF family protein; diguanylate phosphodiesterase 2122536 4117600 Rxyl_2093 Rubrobacter xylanophilus DSM 9941 diguanylate phosphodiesterase YP_644849.1 2121757 D 266117 CDS YP_644850.1 108804913 4117601 complement(2122533..2123300) 1 NC_008148.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: dps:DP1622 probable indole-3-glycerol phosphate synthase; indole-3-glycerol phosphate synthase 2123300 4117601 Rxyl_2094 Rubrobacter xylanophilus DSM 9941 indole-3-glycerol phosphate synthase YP_644850.1 2122533 R 266117 CDS YP_644851.1 108804914 4117602 complement(2123297..2124325) 1 NC_008148.1 KEGG: nwi:Nwi_1837 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; anthranilate phosphoribosyltransferase 2124325 4117602 Rxyl_2095 Rubrobacter xylanophilus DSM 9941 anthranilate phosphoribosyltransferase YP_644851.1 2123297 R 266117 CDS YP_644852.1 108804915 4117603 complement(2124328..2124894) 1 NC_008148.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; PFAM: glutamine amidotransferase class-I; KEGG: neu:NE0014 panthranilate synthase component II (glutamine amido-transferase) protein; anthranilate synthase, component II 2124894 4117603 Rxyl_2096 Rubrobacter xylanophilus DSM 9941 anthranilate synthase, component II YP_644852.1 2124328 R 266117 CDS YP_644853.1 108804916 4117604 2124942..2125892 1 NC_008148.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: eba:ebA4164 ornithine cyclodeaminase; ornithine cyclodeaminase 2125892 4117604 Rxyl_2097 Rubrobacter xylanophilus DSM 9941 ornithine cyclodeaminase YP_644853.1 2124942 D 266117 CDS YP_644854.1 108804917 4117605 2125889..2127058 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1180 major facilitator superfamily MFS_1; major facilitator transporter 2127058 4117605 Rxyl_2098 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_644854.1 2125889 D 266117 CDS YP_644855.1 108804918 4117606 2127119..2129530 1 NC_008148.1 PFAM: glycoside hydrolase, family 31; KEGG: cyb:CYB_1375 glycosyl hydrolase, family 31; alpha-glucosidase 2129530 4117606 Rxyl_2099 Rubrobacter xylanophilus DSM 9941 alpha-glucosidase YP_644855.1 2127119 D 266117 CDS YP_644856.1 108804919 4117607 complement(2129523..2130272) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VPA0382 putative sorbitol-6-phosphate 2-dehydrogenase; short-chain dehydrogenase/reductase SDR 2130272 4117607 Rxyl_2100 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_644856.1 2129523 R 266117 CDS YP_644857.1 108804920 4117608 complement(2130272..2130967) 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: gvi:glr2345 hypothetical protein; HAD family hydrolase 2130967 4117608 Rxyl_2101 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_644857.1 2130272 R 266117 CDS YP_644858.1 108804921 4117609 complement(2130968..2131387) 1 NC_008148.1 hypothetical protein 2131387 4117609 Rxyl_2102 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644858.1 2130968 R 266117 CDS YP_644859.1 108804922 4117610 complement(2131380..2131868) 1 NC_008148.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bte:BTH_I0312 YbaK/EbsC protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2131868 4117610 Rxyl_2103 Rubrobacter xylanophilus DSM 9941 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_644859.1 2131380 R 266117 CDS YP_644860.1 108804923 4117611 2131974..2133164 1 NC_008148.1 PFAM: beta-lactamase; KEGG: bja:blr6983 probable 1,4-butanediol diacrylate esterase; beta-lactamase 2133164 4117611 Rxyl_2104 Rubrobacter xylanophilus DSM 9941 beta-lactamase YP_644860.1 2131974 D 266117 CDS YP_644861.1 108804924 4117612 complement(2133172..2134131) 1 NC_008148.1 KEGG: bpm:BURPS1710b_0584 peptide ABC transporter, periplasmic peptide-binding protein; ABC-type dipeptide transport system periplasmic component-like protein 2134131 4117612 Rxyl_2105 Rubrobacter xylanophilus DSM 9941 ABC-type dipeptide transport system periplasmic component-like protein YP_644861.1 2133172 R 266117 CDS YP_644862.1 108804925 4117613 complement(2134279..2134773) 1 NC_008148.1 hypothetical protein 2134773 4117613 Rxyl_2106 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644862.1 2134279 R 266117 CDS YP_644863.1 108804926 4114703 complement(2134864..2136441) 1 NC_008148.1 KEGG: ade:Adeh_1166 hypothetical protein; hypothetical protein 2136441 4114703 Rxyl_2107 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644863.1 2134864 R 266117 CDS YP_644864.1 108804927 4114704 complement(2136515..2137201) 1 NC_008148.1 PFAM: 3-alpha MOSC; KEGG: bsu:BG12946 similar to hypothetical proteins; MOSC domain-containing protein 2137201 4114704 Rxyl_2108 Rubrobacter xylanophilus DSM 9941 MOSC domain-containing protein YP_644864.1 2136515 R 266117 CDS YP_644865.1 108804928 4114705 complement(2137210..2137647) 1 NC_008148.1 PFAM: regulatory protein, MarR; KEGG: gvi:gll3596 MarR family transcriptional regulatory protein; MarR family transcriptional regulator 2137647 4114705 Rxyl_2109 Rubrobacter xylanophilus DSM 9941 MarR family transcriptional regulator YP_644865.1 2137210 R 266117 CDS YP_644866.1 108804929 4114706 complement(2137803..2138393) 1 NC_008148.1 KEGG: tfu:Tfu_0727 hypothetical protein; hypothetical protein 2138393 4114706 Rxyl_2110 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644866.1 2137803 R 266117 CDS YP_644867.1 108804930 4114707 complement(2138457..2139668) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bha:BH1951 hypothetical protein; zinc-binding alcohol dehydrogenase 2139668 4114707 Rxyl_2111 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_644867.1 2138457 R 266117 CDS YP_644868.1 108804931 4114708 complement(2139673..2141925) 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IB, PSPase-like HAD-superfamily subfamily IB, PSPase-like; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Haloacid dehalogenase-like hydrolase Male sterility-like; KEGG: fra:Francci3_2276 HAD-superfamily subfamily IB, PSPase-like; HAD family hydrolase 2141925 4114708 Rxyl_2112 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_644868.1 2139673 R 266117 CDS YP_644869.1 108804932 4114709 complement(2141922..2142521) 1 NC_008148.1 PFAM: protein of unknown function DUF205; KEGG: mta:Moth_1321 protein of unknown function DUF205; acyl-phosphate glycerol-3-phosphate acyltransferase 2142521 4114709 Rxyl_2113 Rubrobacter xylanophilus DSM 9941 acyl-phosphate glycerol-3-phosphate acyltransferase YP_644869.1 2141922 R 266117 CDS YP_644870.1 108804933 4114710 complement(2142537..2143991) 1 NC_008148.1 PFAM: sulfatase; KEGG: gvi:gll3431 probable sulfatase; sulfatase 2143991 4114710 Rxyl_2114 Rubrobacter xylanophilus DSM 9941 sulfatase YP_644870.1 2142537 R 266117 CDS YP_644871.1 108804934 4114711 complement(2143995..2145524) 1 NC_008148.1 KEGG: sth:STH1407 anthranilate synthetase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein Anthranilate synthase component I-like; anthranilate synthase, component I 2145524 4114711 Rxyl_2115 Rubrobacter xylanophilus DSM 9941 anthranilate synthase, component I YP_644871.1 2143995 R 266117 CDS YP_644872.1 108804935 4114712 complement(2145508..2146149) 1 NC_008148.1 PFAM: phosphoribosyl-AMP cyclohydrolase phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bha:BH3577 phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2146149 4114712 Rxyl_2116 Rubrobacter xylanophilus DSM 9941 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_644872.1 2145508 R 266117 CDS YP_644873.1 108804936 4114713 complement(2146140..2146892) 1 NC_008148.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: mpa:MAP1299 imidazoleglycerol-phosphate synthase cyclase; imidazole glycerol phosphate synthase subunit hisF 2146892 4114713 Rxyl_2117 Rubrobacter xylanophilus DSM 9941 imidazole glycerol phosphate synthase subunit hisF YP_644873.1 2146140 R 266117 CDS YP_644874.1 108804937 4114714 complement(2146909..2147754) 1 NC_008148.1 KEGG: syn:slr1094 hypothetical protein; hypothetical protein 2147754 4114714 Rxyl_2118 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644874.1 2146909 R 266117 CDS YP_644875.1 108804938 4114715 complement(2147751..2149085) 1 NC_008148.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: mta:Moth_2246 phosphoglucosamine mutase; phosphoglucosamine mutase 2149085 4114715 Rxyl_2119 Rubrobacter xylanophilus DSM 9941 phosphoglucosamine mutase YP_644875.1 2147751 R 266117 CDS YP_644876.1 108804939 4114716 complement(2149149..2149541) 1 NC_008148.1 PFAM: ribosomal protein S9; KEGG: bld:BLi00168 ribosomal protein S9; RBL04975; 30S ribosomal protein S9 2149541 4114716 Rxyl_2120 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S9 YP_644876.1 2149149 R 266117 CDS YP_644877.1 108804940 4114717 complement(2149544..2150047) 1 NC_008148.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2150047 rplM 4114717 rplM Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L13 YP_644877.1 2149544 R 266117 CDS YP_644878.1 108804941 4114718 complement(2150044..2150706) 1 NC_008148.1 PFAM: O-methyltransferase, family 3; KEGG: cvi:CV0193 O-methyltransferase; O-methyltransferase family protein 2150706 4114718 Rxyl_2122 Rubrobacter xylanophilus DSM 9941 O-methyltransferase family protein YP_644878.1 2150044 R 266117 CDS YP_644879.1 108804942 4114719 complement(2150688..2151461) 1 NC_008148.1 KEGG: nfa:nfa8390 putative tRNA pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 2151461 4114719 Rxyl_2123 Rubrobacter xylanophilus DSM 9941 tRNA pseudouridine synthase A YP_644879.1 2150688 R 266117 CDS YP_644880.1 108804943 4114720 complement(2151458..2152258) 1 NC_008148.1 PFAM: cobalt transport protein; KEGG: gka:GK0137 cobalt transporter system (permease); cobalt transport protein 2152258 4114720 Rxyl_2124 Rubrobacter xylanophilus DSM 9941 cobalt transport protein YP_644880.1 2151458 R 266117 CDS YP_644881.1 108804944 4114721 complement(2152255..2153073) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH3044 ABC-type cobalt transport system ATPase component; ABC transporter-like protein 2153073 4114721 Rxyl_2125 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644881.1 2152255 R 266117 CDS YP_644882.1 108804945 4114722 complement(2153070..2153801) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH3045 ABC-type cobalt transport system ATPase component; ABC transporter-like protein 2153801 4114722 Rxyl_2126 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_644882.1 2153070 R 266117 CDS YP_644883.1 108804946 4114723 complement(2153943..2154308) 1 NC_008148.1 PFAM: ribosomal protein L17; KEGG: pca:Pcar_0729 ribosomal protein L17; 50S ribosomal protein L17 2154308 4114723 Rxyl_2127 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L17 YP_644883.1 2153943 R 266117 CDS YP_644884.1 108804947 4114724 complement(2154305..2155246) 1 NC_008148.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2155246 4114724 Rxyl_2128 Rubrobacter xylanophilus DSM 9941 DNA-directed RNA polymerase subunit alpha YP_644884.1 2154305 R 266117 CDS YP_644885.1 108804948 4114725 complement(2155301..2155903) 1 NC_008148.1 PFAM: ribosomal protein S4 RNA-binding S4; KEGG: sth:STH3048 30S ribosomal protein S4; 30S ribosomal protein S4 2155903 4114725 Rxyl_2129 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S4 YP_644885.1 2155301 R 266117 CDS YP_644886.1 108804949 4114726 complement(2155949..2156356) 1 NC_008148.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2156356 4114726 Rxyl_2130 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S11 YP_644886.1 2155949 R 266117 CDS YP_644887.1 108804950 4114727 complement(2156357..2156725) 1 NC_008148.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2156725 rpsM 4114727 rpsM Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S13 YP_644887.1 2156357 R 266117 CDS YP_644888.1 108804951 4114728 complement(2156873..2157094) 1 NC_008148.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 S1, IF1 type; KEGG: bcl:ABC0173 translation initiation factor IF-I; translation initiation factor 1 2157094 4114728 Rxyl_2132 Rubrobacter xylanophilus DSM 9941 translation initiation factor 1 YP_644888.1 2156873 R 266117 CDS YP_644889.1 108804952 4114729 complement(2157159..2157938) 1 NC_008148.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: det:DET0496 methionine aminopeptidase, type I; methionine aminopeptidase 2157938 4114729 Rxyl_2133 Rubrobacter xylanophilus DSM 9941 methionine aminopeptidase YP_644889.1 2157159 R 266117 CDS YP_644890.1 108804953 4114730 complement(2157935..2158561) 1 NC_008148.1 KEGG: aae:aq_078 adenylate kinase; TIGRFAM: adenylate kinases; PFAM: adenylate kinase; adenylate kinase 2158561 4114730 Rxyl_2134 Rubrobacter xylanophilus DSM 9941 adenylate kinase YP_644890.1 2157935 R 266117 CDS YP_644891.1 108804954 4114731 complement(2158558..2159844) 1 NC_008148.1 PFAM: SecY protein; KEGG: mta:Moth_2440 SecY protein; protein translocase subunit secY/sec61 alpha 2159844 4114731 Rxyl_2135 Rubrobacter xylanophilus DSM 9941 protein translocase subunit secY/sec61 alpha YP_644891.1 2158558 R 266117 CDS YP_644892.1 108804955 4114732 complement(2159863..2160321) 1 NC_008148.1 PFAM: ribosomal protein L15; KEGG: sth:STH3056 50S ribosomal protein L15; 50S ribosomal protein L15 2160321 4114732 Rxyl_2136 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L15 YP_644892.1 2159863 R 266117 CDS YP_644893.1 108804956 4114733 complement(2160321..2160506) 1 NC_008148.1 PFAM: ribosomal protein L30; KEGG: mpa:MAP4185 50S ribosomal protein L30; 50S ribosomal protein L30 2160506 4114733 Rxyl_2137 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L30 YP_644893.1 2160321 R 266117 CDS YP_644894.1 108804957 4114734 complement(2160503..2161105) 1 NC_008148.1 PFAM: ribosomal protein S5 ribosomal protein S5-like; KEGG: ade:Adeh_1929 ribosomal protein S5; 30S ribosomal protein S5 2161105 4114734 Rxyl_2138 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S5 YP_644894.1 2160503 R 266117 CDS YP_644895.1 108804958 4114735 complement(2161128..2161478) 1 NC_008148.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: tma:TM1484 50S ribosomal protein L18; 50S ribosomal protein L18 2161478 4114735 Rxyl_2139 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L18 YP_644895.1 2161128 R 266117 CDS YP_644896.1 108804959 4114736 complement(2161500..2162033) 1 NC_008148.1 PFAM: ribosomal protein L6; KEGG: mta:Moth_2445 ribosomal protein L6; 50S ribosomal protein L6 2162033 4114736 Rxyl_2140 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L6 YP_644896.1 2161500 R 266117 CDS YP_644897.1 108804960 4114737 complement(2162045..2162443) 1 NC_008148.1 PFAM: ribosomal protein S8; KEGG: gka:GK0120 30S ribosomal protein S8; 30S ribosomal protein S8 2162443 4114737 Rxyl_2141 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S8 YP_644897.1 2162045 R 266117 CDS YP_644898.1 108804961 4114738 complement(2162451..2162636) 1 NC_008148.1 PFAM: ribosomal protein S14; KEGG: tte:TTE2278 ribosomal protein S14; 30S ribosomal protein S14 2162636 4114738 Rxyl_2142 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S14 YP_644898.1 2162451 R 266117 CDS YP_644899.1 108804962 4114739 complement(2162651..2163193) 1 NC_008148.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2163193 rplE 4114739 rplE Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L5 YP_644899.1 2162651 R 266117 CDS YP_644900.1 108804963 4114740 complement(2163186..2163524) 1 NC_008148.1 KEGG: bha:BH0145 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW; SMART: KOW (Kyrpides, Ouzounis, Woese) motif; 50S ribosomal protein L24 2163524 4114740 Rxyl_2144 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L24 YP_644900.1 2163186 R 266117 CDS YP_644901.1 108804964 4114741 complement(2163505..2163873) 1 NC_008148.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: mta:Moth_2450 ribosomal protein L14; 50S ribosomal protein L14 2163873 4114741 Rxyl_2145 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L14 YP_644901.1 2163505 R 266117 CDS YP_644902.1 108804965 4114800 complement(2163873..2164289) 1 NC_008148.1 PFAM: ribosomal protein S17; KEGG: sth:STH3066 30S ribosomal protein S17; 30S ribosomal protein S17 2164289 4114800 Rxyl_2146 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S17 YP_644902.1 2163873 R 266117 CDS YP_644903.1 108804966 4114801 complement(2164293..2164496) 1 NC_008148.1 PFAM: ribosomal protein L29; KEGG: pca:Pcar_0709 50S ribosomal protein L29; 50S ribosomal protein L29 2164496 4114801 Rxyl_2147 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L29 YP_644903.1 2164293 R 266117 CDS YP_644904.1 108804967 4114802 complement(2164496..2164912) 1 NC_008148.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2164912 rplP 4114802 rplP Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L16 YP_644904.1 2164496 R 266117 CDS YP_644905.1 108804968 4114803 complement(2164916..2165572) 1 NC_008148.1 KEGG: mta:Moth_2454 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-like KH, type 2; SMART: KH; 30S ribosomal protein S3 2165572 4114803 Rxyl_2149 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S3 YP_644905.1 2164916 R 266117 CDS YP_644906.1 108804969 4114804 complement(2165575..2165958) 1 NC_008148.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: ttj:TTHA1687 50S ribosomal protein L22; 50S ribosomal protein L22 2165958 4114804 Rxyl_2150 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L22 YP_644906.1 2165575 R 266117 CDS YP_644907.1 108804970 4114805 complement(2165962..2166243) 1 NC_008148.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: tte:TTE2289 ribosomal protein S19; 30S ribosomal protein S19 2166243 4114805 Rxyl_2151 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S19 YP_644907.1 2165962 R 266117 CDS YP_644908.1 108804971 4114806 complement(2166244..2167083) 1 NC_008148.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2167083 rplB 4114806 rplB Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L2 YP_644908.1 2166244 R 266117 CDS YP_644909.1 108804972 4114807 complement(2167085..2167372) 1 NC_008148.1 PFAM: Ribosomal protein L25/L23; KEGG: chy:CHY_2307 ribosomal protein L23; 50S ribosomal protein L23 2167372 4114807 Rxyl_2153 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L23 YP_644909.1 2167085 R 266117 CDS YP_644910.1 108804973 4114808 complement(2167374..2168009) 1 NC_008148.1 PFAM: ribosomal protein L4/L1e; KEGG: pca:Pcar_0702 50S ribosomal protein L4; 50S ribosomal protein L4P 2168009 4114808 Rxyl_2154 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L4P YP_644910.1 2167374 R 266117 CDS YP_644911.1 108804974 4114809 complement(2168011..2168628) 1 NC_008148.1 PFAM: ribosomal protein L3; KEGG: oih:OB0119 50S ribosomal protein L3; 50S ribosomal protein L3P 2168628 4114809 Rxyl_2155 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L3P YP_644911.1 2168011 R 266117 CDS YP_644912.1 108804975 4114810 complement(2168633..2168944) 1 NC_008148.1 PFAM: ribosomal protein S10; KEGG: fra:Francci3_0581 ribosomal protein S10; 30S ribosomal protein S10P 2168944 4114810 Rxyl_2156 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S10P YP_644912.1 2168633 R 266117 CDS YP_644913.1 108804976 4114811 complement(2168953..2170155) 1 NC_008148.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2170155 4114811 Rxyl_2157 Rubrobacter xylanophilus DSM 9941 elongation factor Tu YP_644913.1 2168953 R 266117 CDS YP_644914.1 108804977 4114812 complement(2170169..2172316) 1 NC_008148.1 TIGRFAM: translation elongation factor G Small GTP-binding protein domain; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2 elongation factor G, domain IV; KEGG: mta:Moth_2463 translation elongation factor G; translation elongation factor 2 (EF-2/EF-G) 2172316 4114812 Rxyl_2158 Rubrobacter xylanophilus DSM 9941 translation elongation factor 2 (EF-2/EF-G) YP_644914.1 2170169 R 266117 CDS YP_644915.1 108804978 4114813 complement(2172327..2172797) 1 NC_008148.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2172797 4114813 Rxyl_2159 Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S7 YP_644915.1 2172327 R 266117 CDS YP_644916.1 108804979 4114814 complement(2172811..2173179) 1 NC_008148.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2173179 rpsL 4114814 rpsL Rubrobacter xylanophilus DSM 9941 30S ribosomal protein S12 YP_644916.1 2172811 R 266117 CDS YP_644917.1 108804980 4114815 complement(2173406..2177293) 1 NC_008148.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2177293 4114815 Rxyl_2161 Rubrobacter xylanophilus DSM 9941 DNA-directed RNA polymerase subunit beta' YP_644917.1 2173406 R 266117 CDS YP_644918.1 108804981 4114816 complement(2177297..2180722) 1 NC_008148.1 KEGG: mta:Moth_2468 DNA-directed RNA polymerase, beta subunit; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 6 RNA polymerase Rpb2, domain 7 RNA polymerase Rpb2, domain 2 RNA polymerase beta subunit RNA polymerase Rpb2, domain 3; DNA-directed RNA polymerase subunit beta 2180722 4114816 Rxyl_2162 Rubrobacter xylanophilus DSM 9941 DNA-directed RNA polymerase subunit beta YP_644918.1 2177297 R 266117 CDS YP_644919.1 108804982 4114817 complement(2180863..2181249) 1 NC_008148.1 PFAM: ribosomal protein L7/L12; KEGG: aae:aq_1937 50S ribosomal protein L7/L12; 50S ribosomal protein L12 2181249 4114817 Rxyl_2163 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L12 YP_644919.1 2180863 R 266117 CDS YP_644920.1 108804983 4114818 complement(2181302..2181826) 1 NC_008148.1 PFAM: ribosomal protein L10; KEGG: mta:Moth_2470 ribosomal protein L10; 50S ribosomal protein L10 2181826 4114818 Rxyl_2164 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L10 YP_644920.1 2181302 R 266117 CDS YP_644921.1 108804984 4114819 complement(2181993..2182685) 1 NC_008148.1 PFAM: ribosomal protein L1; KEGG: mta:Moth_2471 ribosomal protein L1; 50S ribosomal protein L1P 2182685 4114819 Rxyl_2165 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L1P YP_644921.1 2181993 R 266117 CDS YP_644922.1 108804985 4114781 complement(2182685..2183122) 1 NC_008148.1 PFAM: ribosomal protein L11; KEGG: oih:OB0107 50S ribosomal protein L11; 50S ribosomal protein L11 2183122 4114781 Rxyl_2166 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L11 YP_644922.1 2182685 R 266117 CDS YP_644923.1 108804986 4114782 complement(2183169..2183699) 1 NC_008148.1 KEGG: pca:Pcar_0689 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG KOW; SMART: NGN KOW (Kyrpides, Ouzounis, Woese) motif; transcription antitermination protein nusG 2183699 4114782 Rxyl_2167 Rubrobacter xylanophilus DSM 9941 transcription antitermination protein nusG YP_644923.1 2183169 R 266117 CDS YP_644924.1 108804987 4114783 complement(2183714..2183974) 1 NC_008148.1 TIGRFAM: SecE subunit of protein translocation complex; PFAM: protein secE/sec61-gamma protein; KEGG: gme:Gmet_0613 SecE subunit of protein translocation complex; protein translocase subunit secE/sec61 gamma 2183974 4114783 Rxyl_2168 Rubrobacter xylanophilus DSM 9941 protein translocase subunit secE/sec61 gamma YP_644924.1 2183714 R 266117 CDS YP_644925.1 108804988 4114784 complement(2184089..2184238) 1 NC_008148.1 PFAM: ribosomal protein L33; KEGG: tfu:Tfu_2667 ribosomal protein L33; 50S ribosomal protein L33 2184238 4114784 Rxyl_2169 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L33 YP_644925.1 2184089 R 266117 CDS YP_644926.1 108804989 4114785 complement(2184311..2185513) 1 NC_008148.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2185513 4114785 Rxyl_2170 Rubrobacter xylanophilus DSM 9941 elongation factor Tu YP_644926.1 2184311 R 266117 CDS YP_644927.1 108804990 4114786 complement(2186026..2186535) 1 NC_008148.1 KEGG: mta:Moth_2480 protein of unknown function DUF901; hypothetical protein 2186535 4114786 Rxyl_2171 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644927.1 2186026 R 266117 CDS YP_644928.1 108804991 4114787 complement(2186520..2187233) 1 NC_008148.1 TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU) RNA 2-O ribose methyltransferase, substrate binding; KEGG: ade:Adeh_1583 RNA methyltransferase TrmH, group 3; RNA methyl transferase TrmH 2187233 4114787 Rxyl_2172 Rubrobacter xylanophilus DSM 9941 RNA methyl transferase TrmH YP_644928.1 2186520 R 266117 CDS YP_644929.1 108804992 4114788 complement(2187237..2188649) 1 NC_008148.1 KEGG: mca:MCA0509 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; cysteinyl-tRNA synthetase 2188649 4114788 Rxyl_2173 Rubrobacter xylanophilus DSM 9941 cysteinyl-tRNA synthetase YP_644929.1 2187237 R 266117 CDS YP_644930.1 108804993 4114789 complement(2188646..2189941) 1 NC_008148.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: tma:TM1351 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 2189941 4114789 Rxyl_2174 Rubrobacter xylanophilus DSM 9941 glutamyl-tRNA synthetase YP_644930.1 2188646 R 266117 CDS YP_644931.1 108804994 4114790 complement(2189931..2190428) 1 NC_008148.1 PFAM: MECDP-synthase; KEGG: eba:ebA6542 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS) (MECDP-synthase), gene: IspF or NMB1512; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2190428 4114790 Rxyl_2175 Rubrobacter xylanophilus DSM 9941 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_644931.1 2189931 R 266117 CDS YP_644932.1 108804995 4114791 complement(2190436..2191131) 1 NC_008148.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: gka:GK0081 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2191131 4114791 Rxyl_2176 Rubrobacter xylanophilus DSM 9941 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_644932.1 2190436 R 266117 CDS YP_644933.1 108804996 4114792 complement(2191132..2192217) 1 NC_008148.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 2192217 4114792 Rxyl_2177 Rubrobacter xylanophilus DSM 9941 DNA integrity scanning protein DisA YP_644933.1 2191132 R 266117 CDS YP_644934.1 108804997 4114793 complement(2192214..2193605) 1 NC_008148.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 2193605 4114793 Rxyl_2178 Rubrobacter xylanophilus DSM 9941 DNA repair protein RadA YP_644934.1 2192214 R 266117 CDS YP_644935.1 108804998 4114794 complement(2193726..2196230) 1 NC_008148.1 PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: fra:Francci3_4383 ATPase AAA-2; ATPase 2196230 4114794 Rxyl_2179 Rubrobacter xylanophilus DSM 9941 ATPase YP_644935.1 2193726 R 266117 CDS YP_644936.1 108804999 4114795 complement(2196614..2198092) 1 NC_008148.1 KEGG: afu:AF1216 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class 1c; lysyl-tRNA synthetase 2198092 4114795 Rxyl_2180 Rubrobacter xylanophilus DSM 9941 lysyl-tRNA synthetase YP_644936.1 2196614 R 266117 CDS YP_644937.1 108805000 4114796 complement(2198133..2198597) 1 NC_008148.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB region; KEGG: mta:Moth_0151 GreA/GreB family elongation factor; transcription elongation factor GreA 2198597 4114796 Rxyl_2181 Rubrobacter xylanophilus DSM 9941 transcription elongation factor GreA YP_644937.1 2198133 R 266117 CDS YP_644938.1 108805001 4114797 complement(2198695..2199489) 1 NC_008148.1 TIGRFAM: transcriptional activator, putative, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: ctc:CTC00207 putative transcriptional regulator; pantothenate kinase 2199489 4114797 Rxyl_2182 Rubrobacter xylanophilus DSM 9941 pantothenate kinase YP_644938.1 2198695 R 266117 CDS YP_644939.1 108805002 4114798 complement(2199483..2199980) 1 NC_008148.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: xoo:XOO2365 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2199980 4114798 Rxyl_2183 Rubrobacter xylanophilus DSM 9941 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_644939.1 2199483 R 266117 CDS YP_644940.1 108805003 4114799 complement(2199991..2200845) 1 NC_008148.1 KEGG: mca:MCA2317 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 2200845 4114799 Rxyl_2184 Rubrobacter xylanophilus DSM 9941 dihydropteroate synthase YP_644940.1 2199991 R 266117 CDS YP_644941.1 108805004 4117419 complement(2200849..2202732) 1 NC_008148.1 KEGG: tfu:Tfu_2895 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular; SMART: ATPase; FtsH-2 peptidase 2202732 4117419 Rxyl_2185 Rubrobacter xylanophilus DSM 9941 FtsH-2 peptidase YP_644941.1 2200849 R 266117 CDS YP_644942.1 108805005 4117420 complement(2202809..2203378) 1 NC_008148.1 KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 2203378 4117420 Rxyl_2186 Rubrobacter xylanophilus DSM 9941 hypoxanthine phosphoribosyltransferase YP_644942.1 2202809 R 266117 CDS YP_644943.1 108805006 4117421 complement(2203375..2204709) 1 NC_008148.1 TIGRFAM: tRNA(Ile)-lysidine synthetase-like; PFAM: ExsB PP-loop; KEGG: ade:Adeh_1494 tRNA(Ile)-lysidine synthetase-like; tRNA(Ile)-lysidine synthetase-like protein 2204709 4117421 Rxyl_2187 Rubrobacter xylanophilus DSM 9941 tRNA(Ile)-lysidine synthetase-like protein YP_644943.1 2203375 R 266117 CDS YP_644944.1 108805007 4117422 2204818..2206065 1 NC_008148.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sth:STH487 alkaline proteinase; peptidase S8/S53 subtilisin kexin sedolisin 2206065 4117422 Rxyl_2188 Rubrobacter xylanophilus DSM 9941 peptidase S8/S53 subtilisin kexin sedolisin YP_644944.1 2204818 D 266117 CDS YP_644945.1 108805008 4117423 2206440..2206823 1 NC_008148.1 hypothetical protein 2206823 4117423 Rxyl_2189 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644945.1 2206440 D 266117 CDS YP_644946.1 108805009 4117424 complement(2207440..2208138) 1 NC_008148.1 KEGG: gvi:gll0114 hypothetical protein; hypothetical protein 2208138 4117424 Rxyl_2190 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644946.1 2207440 R 266117 CDS YP_644947.1 108805010 4117425 complement(2208308..2208610) 1 NC_008148.1 hypothetical protein 2208610 4117425 Rxyl_2191 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644947.1 2208308 R 266117 CDS YP_644948.1 108805011 4117426 complement(2208723..2209358) 1 NC_008148.1 KEGG: bbr:BB4888 putative reductase; putative reductase 2209358 4117426 Rxyl_2192 Rubrobacter xylanophilus DSM 9941 putative reductase YP_644948.1 2208723 R 266117 CDS YP_644949.1 108805012 4117427 complement(2209355..2210464) 1 NC_008148.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2210464 4117427 Rxyl_2193 Rubrobacter xylanophilus DSM 9941 GTP-dependent nucleic acid-binding protein EngD YP_644949.1 2209355 R 266117 CDS YP_644950.1 108805013 4117428 2210532..2211017 1 NC_008148.1 TIGRFAM: SUF system FeS assembly protein; PFAM: nitrogen-fixing NifU-like-like; KEGG: nph:NP0940A homolog to nitrogen fixation protein NifU; SUF system FeS assembly protein 2211017 4117428 Rxyl_2194 Rubrobacter xylanophilus DSM 9941 SUF system FeS assembly protein YP_644950.1 2210532 D 266117 CDS YP_644951.1 108805014 4117429 2211014..2211406 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A3236 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2211406 4117429 Rxyl_2195 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_644951.1 2211014 D 266117 CDS YP_644952.1 108805015 4117430 2211506..2212978 1 NC_008148.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: sth:STH1068 putative amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 2212978 4117430 Rxyl_2196 Rubrobacter xylanophilus DSM 9941 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_644952.1 2211506 D 266117 CDS YP_644953.1 108805016 4117431 2212975..2213949 1 NC_008148.1 hypothetical protein 2213949 4117431 Rxyl_2197 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644953.1 2212975 D 266117 CDS YP_644954.1 108805017 4117432 complement(2213937..2214365) 1 NC_008148.1 hypothetical protein 2214365 4117432 Rxyl_2198 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644954.1 2213937 R 266117 CDS YP_644955.1 108805018 4117433 2214462..2214689 1 NC_008148.1 hypothetical protein 2214689 4117433 Rxyl_2199 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644955.1 2214462 D 266117 CDS YP_644956.1 108805019 4117434 complement(2214703..2215083) 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pca:Pcar_1477 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2215083 4117434 Rxyl_2200 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_644956.1 2214703 R 266117 CDS YP_644957.1 108805020 4117435 2215175..2216770 1 NC_008148.1 PFAM: ABC-1; KEGG: tbd:Tbd_0994 probable ubiquinone biosynthesis protein; hypothetical protein 2216770 4117435 Rxyl_2201 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644957.1 2215175 D 266117 CDS YP_644958.1 108805021 4117436 complement(2217518..2217745) 1 NC_008148.1 hypothetical protein 2217745 4117436 Rxyl_2203 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644958.1 2217518 R 266117 CDS YP_644959.1 108805022 4117437 complement(2217817..2218581) 1 NC_008148.1 KEGG: hal:VNG1681C hypothetical protein; hypothetical protein 2218581 4117437 Rxyl_2204 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644959.1 2217817 R 266117 CDS YP_644960.1 108805023 4117438 2218624..2219475 1 NC_008148.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 2219475 ubiA 4117438 ubiA Rubrobacter xylanophilus DSM 9941 prenyltransferase YP_644960.1 2218624 D 266117 CDS YP_644961.1 108805024 4117439 2219472..2220896 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: dra:DR0810 dehydrogenase, putative; FAD dependent oxidoreductase 2220896 4117439 Rxyl_2206 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_644961.1 2219472 D 266117 CDS YP_644962.1 108805025 4117440 2220893..2222038 1 NC_008148.1 PFAM: aminotransferase, class V; KEGG: rru:Rru_A3040 aminotransferase, class V; class V aminotransferase 2222038 4117440 Rxyl_2207 Rubrobacter xylanophilus DSM 9941 class V aminotransferase YP_644962.1 2220893 D 266117 CDS YP_644963.1 108805026 4117441 complement(2222042..2222284) 1 NC_008148.1 hypothetical protein 2222284 4117441 Rxyl_2208 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644963.1 2222042 R 266117 CDS YP_644964.1 108805027 4117442 complement(2222327..2222989) 1 NC_008148.1 hypothetical protein 2222989 4117442 Rxyl_2209 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644964.1 2222327 R 266117 CDS YP_644965.1 108805028 4117443 complement(2222986..2224494) 1 NC_008148.1 TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_3710 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 2224494 4117443 Rxyl_2210 Rubrobacter xylanophilus DSM 9941 EmrB/QacA family drug resistance transporter YP_644965.1 2222986 R 266117 CDS YP_644966.1 108805029 4117444 complement(2224508..2224876) 1 NC_008148.1 PFAM: response regulator receiver; KEGG: sth:STH731 two-component response regulator; response regulator receiver protein 2224876 4117444 Rxyl_2211 Rubrobacter xylanophilus DSM 9941 response regulator receiver protein YP_644966.1 2224508 R 266117 CDS YP_644967.1 108805030 4117445 2225004..2226236 1 NC_008148.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2226236 4117445 Rxyl_2212 Rubrobacter xylanophilus DSM 9941 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_644967.1 2225004 D 266117 CDS YP_644968.1 108805031 4117446 2226257..2227036 1 NC_008148.1 KEGG: gvi:gll2767 hypothetical protein; hypothetical protein 2227036 4117446 Rxyl_2213 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644968.1 2226257 D 266117 CDS YP_644969.1 108805032 4117447 complement(2227424..2228215) 1 NC_008148.1 PFAM: conserved hypothetical protein 730; KEGG: fra:Francci3_3841 conserved hypothetical protein 730; hypothetical protein 2228215 4117447 Rxyl_2215 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644969.1 2227424 R 266117 CDS YP_644970.1 108805033 4117448 complement(2228451..2228846) 1 NC_008148.1 PFAM: Roadblock/LC7; KEGG: cyb:CYB_1484 roadblock/LC7 domain family; roadblock/LC7 domain-contain protein 2228846 4117448 Rxyl_2217 Rubrobacter xylanophilus DSM 9941 roadblock/LC7 domain-contain protein YP_644970.1 2228451 R 266117 CDS YP_644971.1 108805034 4117449 complement(2229158..2230999) 1 NC_008148.1 hypothetical protein 2230999 4117449 Rxyl_2218 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644971.1 2229158 R 266117 CDS YP_644972.1 108805035 4117450 complement(2231045..2232181) 1 NC_008148.1 PFAM: phage integrase; KEGG: mta:Moth_1796 phage integrase; phage integrase 2232181 4117450 Rxyl_2219 Rubrobacter xylanophilus DSM 9941 phage integrase YP_644972.1 2231045 R 266117 CDS YP_644973.1 108805036 4117451 complement(2232411..2232824) 1 NC_008148.1 hypothetical protein 2232824 4117451 Rxyl_2220 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644973.1 2232411 R 266117 CDS YP_644974.1 108805037 4117452 complement(2232821..2233258) 1 NC_008148.1 hypothetical protein 2233258 4117452 Rxyl_2221 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644974.1 2232821 R 266117 CDS YP_644975.1 108805038 4117453 complement(2233564..2233962) 1 NC_008148.1 hypothetical protein 2233962 4117453 Rxyl_2222 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644975.1 2233564 R 266117 CDS YP_644976.1 108805039 4117454 complement(2233962..2234234) 1 NC_008148.1 PFAM: zinc finger, SWIM-type; SWIM-type zinc finger domain-containing protein 2234234 4117454 Rxyl_2223 Rubrobacter xylanophilus DSM 9941 SWIM-type zinc finger domain-containing protein YP_644976.1 2233962 R 266117 CDS YP_644977.1 108805040 4117455 2235911..2237023 1 NC_008148.1 PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2765 integrase, catalytic region; integrase catalytic subunit 2237023 4117455 Rxyl_2225 Rubrobacter xylanophilus DSM 9941 integrase catalytic subunit YP_644977.1 2235911 D 266117 CDS YP_644978.1 108805041 4117456 complement(2237020..2237343) 1 NC_008148.1 PFAM: transposase IS3/IS911; KEGG: gvi:glr3858 putative transposase; transposase IS3/IS911 2237343 4117456 Rxyl_2226 Rubrobacter xylanophilus DSM 9941 transposase IS3/IS911 YP_644978.1 2237020 R 266117 CDS YP_644979.1 108805042 4117457 complement(2237647..2237991) 1 NC_008148.1 hypothetical protein 2237991 4117457 Rxyl_2228 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644979.1 2237647 R 266117 CDS YP_644980.1 108805043 4115181 complement(2238225..2238920) 1 NC_008148.1 PFAM: HhH-GPD; KEGG: ape:APE0875 A/G-specific adenine glycosylase; HhH-GPD 2238920 4115181 Rxyl_2229 Rubrobacter xylanophilus DSM 9941 HhH-GPD YP_644980.1 2238225 R 266117 CDS YP_644981.1 108805044 4115182 2239015..2240640 1 NC_008148.1 hypothetical protein 2240640 4115182 Rxyl_2230 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644981.1 2239015 D 266117 CDS YP_644982.1 108805045 4115183 complement(2242005..2243222) 1 NC_008148.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: sil:SPO1049 DNA methylase, C-5 cytosine-specific family; DNA (cytosine-5-)-methyltransferase 2243222 4115183 Rxyl_2232 Rubrobacter xylanophilus DSM 9941 DNA (cytosine-5-)-methyltransferase YP_644982.1 2242005 R 266117 CDS YP_644983.1 108805046 4115184 complement(2243219..2244853) 1 NC_008148.1 hypothetical protein 2244853 4115184 Rxyl_2233 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644983.1 2243219 R 266117 CDS YP_644984.1 108805047 4115185 2245200..2245460 1 NC_008148.1 PFAM: helix-turn-helix motif; KEGG: rsp:RSP_0641 transcriptional regulator, XRE family; XRE family transcriptional regulator 2245460 4115185 Rxyl_2234 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_644984.1 2245200 D 266117 CDS YP_644985.1 108805048 4115186 complement(2245488..2245832) 1 NC_008148.1 hypothetical protein 2245832 4115186 Rxyl_2235 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644985.1 2245488 R 266117 CDS YP_644986.1 108805049 4115187 complement(2247064..2247357) 1 NC_008148.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:blr7542 hypothetical protein; antibiotic biosynthesis monooxygenase 2247357 4115187 Rxyl_2236 Rubrobacter xylanophilus DSM 9941 antibiotic biosynthesis monooxygenase YP_644986.1 2247064 R 266117 CDS YP_644987.1 108805050 4115188 complement(2247896..2248858) 1 NC_008148.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6303 hydroxylase; fumarylacetoacetate (FAA) hydrolase 2248858 4115188 Rxyl_2238 Rubrobacter xylanophilus DSM 9941 fumarylacetoacetate (FAA) hydrolase YP_644987.1 2247896 R 266117 CDS YP_644988.1 108805051 4115189 complement(2249890..2250909) 1 NC_008148.1 PFAM: amidohydrolase 2; KEGG: sco:SCO6305 hypothetical protein; aminocarboxymuconate-semialdehyde decarboxylase 2250909 4115189 Rxyl_2240 Rubrobacter xylanophilus DSM 9941 aminocarboxymuconate-semialdehyde decarboxylase YP_644988.1 2249890 R 266117 CDS YP_644989.1 108805052 4115190 complement(2250906..2251955) 1 NC_008148.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sco:SCO6308 hydrolase; fumarylacetoacetate (FAA) hydrolase 2251955 4115190 Rxyl_2241 Rubrobacter xylanophilus DSM 9941 fumarylacetoacetate (FAA) hydrolase YP_644989.1 2250906 R 266117 CDS YP_644990.1 108805053 4115191 complement(2251975..2253114) 1 NC_008148.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: ppu:PP3199 hypothetical protein; hypothetical protein 2253114 4115191 Rxyl_2242 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_644990.1 2251975 R 266117 CDS YP_644991.1 108805054 4115192 complement(2253126..2254160) 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ttj:TTHB250 metapyrocatechase (catechol 2,3-dioxygenase); catechol 2,3-dioxygenase 2254160 4115192 Rxyl_2243 Rubrobacter xylanophilus DSM 9941 catechol 2,3-dioxygenase YP_644991.1 2253126 R 266117 CDS YP_644992.1 108805055 4115193 complement(2254293..2255198) 1 NC_008148.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ava:Ava_0824 transcriptional regulator, LysR family; LysR family transcriptional regulator 2255198 4115193 Rxyl_2244 Rubrobacter xylanophilus DSM 9941 LysR family transcriptional regulator YP_644992.1 2254293 R 266117 CDS YP_644993.1 108805056 4115194 2255333..2256121 1 NC_008148.1 PFAM: putative cyclase; KEGG: nph:NP4388A hypothetical protein; putative cyclase 2256121 4115194 Rxyl_2245 Rubrobacter xylanophilus DSM 9941 putative cyclase YP_644993.1 2255333 D 266117 CDS YP_644994.1 108805057 4115195 2257700..2258131 1 NC_008148.1 PFAM: Cupin Cupin 2, conserved barrel; KEGG: pho:PH0047 hypothetical protein; cupin 2 barrel domain-containing protein 2258131 4115195 Rxyl_2249 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_644994.1 2257700 D 266117 CDS YP_644995.1 108805058 4115196 complement(2259325..2260332) 1 NC_008148.1 PFAM: proline racemase; KEGG: bur:Bcep18194_B1660 proline racemase; proline racemase 2260332 4115196 Rxyl_2251 Rubrobacter xylanophilus DSM 9941 proline racemase YP_644995.1 2259325 R 266117 CDS YP_644996.1 108805059 4115197 complement(2263617..2265611) 1 NC_008148.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pae:PA5398 probable FMN oxidoreductase; NADH:flavin oxidoreductase 2265611 4115197 Rxyl_2254 Rubrobacter xylanophilus DSM 9941 NADH:flavin oxidoreductase YP_644996.1 2263617 R 266117 CDS YP_644997.1 108805060 4115198 complement(2265639..2266979) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: ecs:ECs0048 putative transport protein; general substrate transporter 2266979 4115198 Rxyl_2255 Rubrobacter xylanophilus DSM 9941 general substrate transporter YP_644997.1 2265639 R 266117 CDS YP_644998.1 108805061 4115199 complement(2267216..2268502) 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: xcb:XC_1538 D-amino acid dehydrogenase subunit; D-amino acid dehydrogenase small subunit 2268502 4115199 Rxyl_2256 Rubrobacter xylanophilus DSM 9941 D-amino acid dehydrogenase small subunit YP_644998.1 2267216 R 266117 CDS YP_644999.1 108805062 4115200 complement(2268519..2269892) 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: bcl:ABC1114 aldehyde dehydrogenase; aldehyde dehydrogenase 2269892 4115200 Rxyl_2257 Rubrobacter xylanophilus DSM 9941 aldehyde dehydrogenase YP_644999.1 2268519 R 266117 CDS YP_645000.1 108805063 4115201 complement(2269937..2270821) 1 NC_008148.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV1731 putative dihydrodipicolinate synthase; dihydrodipicolinate synthase 2270821 4115201 Rxyl_2258 Rubrobacter xylanophilus DSM 9941 dihydrodipicolinate synthase YP_645000.1 2269937 R 266117 CDS YP_645001.1 108805064 4115202 complement(2270834..2271847) 1 NC_008148.1 PFAM: proline racemase; KEGG: sco:SCO6293 hypothetical protein; proline racemase 2271847 4115202 Rxyl_2259 Rubrobacter xylanophilus DSM 9941 proline racemase YP_645001.1 2270834 R 266117 CDS YP_645002.1 108805065 4115203 complement(2271834..2272532) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr7144 transcriptional regulator; GntR family transcriptional regulator 2272532 4115203 Rxyl_2260 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_645002.1 2271834 R 266117 CDS YP_645003.1 108805066 4115204 2273038..2273295 1 NC_008148.1 hypothetical protein 2273295 4115204 Rxyl_2261 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645003.1 2273038 D 266117 CDS YP_645004.1 108805067 4115205 complement(2273303..2274277) 1 NC_008148.1 PFAM: nuclease (SNase-like) membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_A0032 membrane-bound metal-dependent hydrolase; nuclease 2274277 4115205 Rxyl_2262 Rubrobacter xylanophilus DSM 9941 nuclease YP_645004.1 2273303 R 266117 CDS YP_645005.1 108805068 4115206 complement(2274287..2274661) 1 NC_008148.1 KEGG: noc:Noc_A0035 hypothetical protein; hypothetical protein 2274661 4115206 Rxyl_2263 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645005.1 2274287 R 266117 CDS YP_645006.1 108805069 4115207 complement(2274973..2275233) 1 NC_008148.1 hypothetical protein 2275233 4115207 Rxyl_2264 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645006.1 2274973 R 266117 CDS YP_645007.1 108805070 4115208 complement(2275230..2275511) 1 NC_008148.1 hypothetical protein 2275511 4115208 Rxyl_2265 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645007.1 2275230 R 266117 CDS YP_645008.1 108805071 4115209 complement(2275508..2275813) 1 NC_008148.1 hypothetical protein 2275813 4115209 Rxyl_2266 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645008.1 2275508 R 266117 CDS YP_645009.1 108805072 4115210 complement(2275852..2278077) 1 NC_008148.1 KEGG: mta:Moth_1807 hypothetical protein; hypothetical protein 2278077 4115210 Rxyl_2267 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645009.1 2275852 R 266117 CDS YP_645010.1 108805073 4115211 complement(2278849..2279184) 1 NC_008148.1 hypothetical protein 2279184 4115211 Rxyl_2268 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645010.1 2278849 R 266117 CDS YP_645011.1 108805074 4115212 complement(2279190..2280548) 1 NC_008148.1 hypothetical protein 2280548 4115212 Rxyl_2269 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645011.1 2279190 R 266117 CDS YP_645012.1 108805075 4115213 2280801..2281133 1 NC_008148.1 hypothetical protein 2281133 4115213 Rxyl_2270 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645012.1 2280801 D 266117 CDS YP_645013.1 108805076 4115214 2281758..2283401 1 NC_008148.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: mka:MK0531 acetolactate synthase large subunit; thiamine pyrophosphate enzyme-like TPP binding region 2283401 4115214 Rxyl_2271 Rubrobacter xylanophilus DSM 9941 thiamine pyrophosphate enzyme-like TPP binding region YP_645013.1 2281758 D 266117 CDS YP_645014.1 108805077 4115215 2283414..2284196 1 NC_008148.1 PFAM: putative cyclase; KEGG: nfa:nfa12380 hypothetical protein; putative cyclase 2284196 4115215 Rxyl_2272 Rubrobacter xylanophilus DSM 9941 putative cyclase YP_645014.1 2283414 D 266117 CDS YP_645015.1 108805078 4115216 complement(2284193..2285149) 1 NC_008148.1 hypothetical protein 2285149 4115216 Rxyl_2273 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645015.1 2284193 R 266117 CDS YP_645016.1 108805079 4115217 2285216..2287531 1 NC_008148.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase 2287531 4115217 Rxyl_2274 Rubrobacter xylanophilus DSM 9941 salicylyl-CoA 5-hydroxylase YP_645016.1 2285216 D 266117 CDS YP_645017.1 108805080 4115218 2287547..2288311 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_A2183 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2288311 4115218 Rxyl_2275 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645017.1 2287547 D 266117 CDS YP_645018.1 108805081 4115219 2288311..2288787 1 NC_008148.1 PFAM: regulatory protein, MarR; KEGG: reu:Reut_A2992 regulatory protein, MarR; MarR family transcriptional regulator 2288787 4115219 Rxyl_2276 Rubrobacter xylanophilus DSM 9941 MarR family transcriptional regulator YP_645018.1 2288311 D 266117 CDS YP_645019.1 108805082 4117497 2288789..2289607 1 NC_008148.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2289607 4117497 Rxyl_2277 Rubrobacter xylanophilus DSM 9941 enoyl-CoA hydratase YP_645019.1 2288789 D 266117 CDS YP_645020.1 108805083 4117498 2289609..2290781 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: rso:RS02011 probable acyl-CoA dehydrogenase oxidoreductase protein; acyl-CoA dehydrogenase-like protein 2290781 4117498 Rxyl_2278 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_645020.1 2289609 D 266117 CDS YP_645021.1 108805084 4117499 2290806..2292437 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa12430 putative acyl-CoA synthetase; AMP-dependent synthetase and ligase 2292437 4117499 Rxyl_2279 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_645021.1 2290806 D 266117 CDS YP_645022.1 108805085 4117500 2292437..2292835 1 NC_008148.1 PFAM: Endoribonuclease L-PSP; KEGG: mlo:mll5429 hypothetical protein; endoribonuclease L-PSP 2292835 4117500 Rxyl_2280 Rubrobacter xylanophilus DSM 9941 endoribonuclease L-PSP YP_645022.1 2292437 D 266117 CDS YP_645023.1 108805086 4117501 2293250..2293594 1 NC_008148.1 KEGG: sme:SMb20060 probable ISRm5 transposase protein; hypothetical protein 2293594 4117501 Rxyl_2281 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645023.1 2293250 D 266117 CDS YP_645024.1 108805087 4117502 2293947..2295887 1 NC_008148.1 PFAM: protein of unknown function RIO1 protein kinase; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: mta:Moth_0912 serine/threonine protein kinase; serine/threonine protein kinase 2295887 4117502 Rxyl_2282 Rubrobacter xylanophilus DSM 9941 serine/threonine protein kinase YP_645024.1 2293947 D 266117 CDS YP_645025.1 108805088 4117503 2296158..2296397 1 NC_008148.1 hypothetical protein 2296397 4117503 Rxyl_2283 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645025.1 2296158 D 266117 CDS YP_645026.1 108805089 4117504 complement(2296763..2297092) 1 NC_008148.1 hypothetical protein 2297092 4117504 Rxyl_2284 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645026.1 2296763 R 266117 CDS YP_645027.1 108805090 4117505 2297214..2297471 1 NC_008148.1 hypothetical protein 2297471 4117505 Rxyl_2285 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645027.1 2297214 D 266117 CDS YP_645028.1 108805091 4117506 2297664..2299394 1 NC_008148.1 PFAM: transposase, IS4; KEGG: gvi:glr4322 putative transposase; IS4 family transposase 2299394 4117506 Rxyl_2286 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_645028.1 2297664 D 266117 CDS YP_645029.1 108805092 4117507 complement(2302146..2302580) 1 NC_008148.1 hypothetical protein 2302580 4117507 Rxyl_2288 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645029.1 2302146 R 266117 CDS YP_645030.1 108805093 4117508 complement(2303102..2303962) 1 NC_008148.1 PFAM: lipase, class 2; KEGG: sco:SCO1735 secreted lipase; lipase, class 2 2303962 4117508 Rxyl_2289 Rubrobacter xylanophilus DSM 9941 lipase, class 2 YP_645030.1 2303102 R 266117 CDS YP_645031.1 108805094 4117509 2304245..2305006 1 NC_008148.1 PFAM: metallophosphoesterase; KEGG: mja:MJ0912 hypothetical protein; metallophosphoesterase 2305006 4117509 Rxyl_2290 Rubrobacter xylanophilus DSM 9941 metallophosphoesterase YP_645031.1 2304245 D 266117 CDS YP_645032.1 108805095 4117510 2305012..2305452 1 NC_008148.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2305452 4117510 Rxyl_2291 Rubrobacter xylanophilus DSM 9941 D-tyrosyl-tRNA(Tyr) deacylase YP_645032.1 2305012 D 266117 CDS YP_645033.1 108805096 4117511 complement(2305449..2306252) 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: mac:MA4347 menaquinone biosynthesis methyltransferase (2-heptaprenyl-1,4-naphthoquinone methyltransferase); type 11 methyltransferase 2306252 4117511 Rxyl_2292 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_645033.1 2305449 R 266117 CDS YP_645034.1 108805097 4117512 2306302..2308143 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pca:Pcar_2038 ABC transporter, ATP-binding protein; ABC transporter-like protein 2308143 4117512 Rxyl_2293 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645034.1 2306302 D 266117 CDS YP_645035.1 108805098 4117513 complement(2308321..2309397) 1 NC_008148.1 PFAM: Peptidoglycan-binding domain 1 cell wall hydrolase/autolysin; KEGG: mle:ML2704 putative hydrolase; cell wall hydrolase/autolysin 2309397 4117513 Rxyl_2294 Rubrobacter xylanophilus DSM 9941 cell wall hydrolase/autolysin YP_645035.1 2308321 R 266117 CDS YP_645036.1 108805099 4117514 complement(2309526..2309792) 1 NC_008148.1 PFAM: chaperonin Cpn10; KEGG: tma:TM0505 groES protein; chaperonin Cpn10 2309792 4117514 Rxyl_2295 Rubrobacter xylanophilus DSM 9941 chaperonin Cpn10 YP_645036.1 2309526 R 266117 CDS YP_645037.1 108805100 4117515 complement(2309899..2310210) 1 NC_008148.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: det:DET0695 thioredoxin; thioredoxin 2310210 4117515 Rxyl_2296 Rubrobacter xylanophilus DSM 9941 thioredoxin YP_645037.1 2309899 R 266117 CDS YP_645038.1 108805101 4117516 complement(2310281..2311240) 1 NC_008148.1 PFAM: PfkB; KEGG: sth:STH1246 tagatose-6-phosphate kinase; 1-phosphofructokinase 2311240 4117516 Rxyl_2297 Rubrobacter xylanophilus DSM 9941 1-phosphofructokinase YP_645038.1 2310281 R 266117 CDS YP_645039.1 108805102 4117517 complement(2311245..2312399) 1 NC_008148.1 PFAM: beta-lactamase peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: mta:Moth_1058 serine-type D-Ala-D-Ala carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 2312399 4117517 Rxyl_2298 Rubrobacter xylanophilus DSM 9941 Serine-type D-Ala-D-Ala carboxypeptidase YP_645039.1 2311245 R 266117 CDS YP_645040.1 108805103 4117518 2312504..2313025 1 NC_008148.1 PFAM: Redoxin; KEGG: plt:Plut_1572 hypothetical protein; redoxin 2313025 4117518 Rxyl_2299 Rubrobacter xylanophilus DSM 9941 redoxin YP_645040.1 2312504 D 266117 CDS YP_645041.1 108805104 4117519 complement(2313185..2314027) 1 NC_008148.1 TIGRFAM: Orotidine 5'-phosphate decarboxylase subfamily 2; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sru:SRU_1735 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase subfamily protein 2314027 4117519 Rxyl_2300 Rubrobacter xylanophilus DSM 9941 orotidine 5'-phosphate decarboxylase subfamily protein YP_645041.1 2313185 R 266117 CDS YP_645042.1 108805105 4117520 complement(2314109..2314381) 1 NC_008148.1 PFAM: histone-like DNA-binding protein; KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein; nucleoid protein Hbs 2314381 4117520 Rxyl_2301 Rubrobacter xylanophilus DSM 9941 nucleoid protein Hbs YP_645042.1 2314109 R 266117 CDS YP_645043.1 108805106 4117521 complement(2314476..2315012) 1 NC_008148.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: fra:Francci3_0559 orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 2315012 4117521 Rxyl_2302 Rubrobacter xylanophilus DSM 9941 orotate phosphoribosyltransferase YP_645043.1 2314476 R 266117 CDS YP_645044.1 108805107 4117522 complement(2314999..2315454) 1 NC_008148.1 hypothetical protein 2315454 4117522 Rxyl_2303 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645044.1 2314999 R 266117 CDS YP_645045.1 108805108 4117523 complement(2315527..2315787) 1 NC_008148.1 PFAM: protein of unknown function DUF156; KEGG: mbo:Mb0992 hypothetical protein; hypothetical protein 2315787 4117523 Rxyl_2304 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645045.1 2315527 R 266117 CDS YP_645046.1 108805109 4117524 complement(2315760..2317298) 1 NC_008148.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: mta:Moth_0838 UDP-N-acetylmuramyl-tripeptide synthetases; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2317298 4117524 Rxyl_2305 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_645046.1 2315760 R 266117 CDS YP_645047.1 108805110 4117525 2317478..2318578 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit 2318578 4117525 Rxyl_2306 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_645047.1 2317478 D 266117 CDS YP_645048.1 108805111 4117526 2318562..2319386 1 NC_008148.1 PFAM: inositol monophosphatase; KEGG: gsu:GSU0942 inositol-1-monophosphatase; inositol-1(or 4)-monophosphatase 2319386 4117526 Rxyl_2307 Rubrobacter xylanophilus DSM 9941 inositol-1(or 4)-monophosphatase YP_645048.1 2318562 D 266117 CDS YP_645049.1 108805112 4117527 complement(2319383..2321668) 1 NC_008148.1 KEGG: mta:Moth_1710 penicillin-binding protein 1A; TIGRFAM: Penicillin-binding protein 1A; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; penicillin-binding protein 1A 2321668 4117527 Rxyl_2308 Rubrobacter xylanophilus DSM 9941 penicillin-binding protein 1A YP_645049.1 2319383 R 266117 CDS YP_645050.1 108805113 4117528 2321992..2322855 1 NC_008148.1 PFAM: aminotransferase, class V; KEGG: sth:STH132 L-cysteine/cystine lyase; class V aminotransferase 2322855 4117528 Rxyl_2309 Rubrobacter xylanophilus DSM 9941 class V aminotransferase YP_645050.1 2321992 D 266117 CDS YP_645051.1 108805114 4117529 complement(2322852..2323517) 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: tte:TTE2216 predicted phosphatase; HAD family hydrolase 2323517 4117529 Rxyl_2310 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_645051.1 2322852 R 266117 CDS YP_645052.1 108805115 4117530 complement(2323514..2324353) 1 NC_008148.1 KEGG: gsu:GSU1523 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; 3'-nucleotidase/5'- nucleotidase/exopolyphosphatase 2324353 4117530 Rxyl_2311 Rubrobacter xylanophilus DSM 9941 3'-nucleotidase/5'- nucleotidase/exopolyphosphatase YP_645052.1 2323514 R 266117 CDS YP_645053.1 108805116 4117531 2324457..2325464 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1730 hypothetical protein; putative glucosyl-3-phosphoglycerate synthase 2325464 4117531 Rxyl_2312 Rubrobacter xylanophilus DSM 9941 putative glucosyl-3-phosphoglycerate synthase YP_645053.1 2324457 D 266117 CDS YP_645054.1 108805117 4117532 2325464..2325763 1 NC_008148.1 KEGG: nfa:nfa20770 putative ScnB homolog; putative ScnB-like protein 2325763 4117532 Rxyl_2313 Rubrobacter xylanophilus DSM 9941 putative ScnB-like protein YP_645054.1 2325464 D 266117 CDS YP_645055.1 108805118 4117533 2325748..2326041 1 NC_008148.1 KEGG: nfa:nfa20760 putative ScnA homolog; putative ScnA-like protein 2326041 4117533 Rxyl_2314 Rubrobacter xylanophilus DSM 9941 putative ScnA-like protein YP_645055.1 2325748 D 266117 CDS YP_645056.1 108805119 4117534 2326038..2326661 1 NC_008148.1 KEGG: sil:SPO1314 nitrile hydratase subunit alpha; TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain; nitrile hydratase subunit alpha 2326661 4117534 Rxyl_2315 Rubrobacter xylanophilus DSM 9941 nitrile hydratase subunit alpha YP_645056.1 2326038 D 266117 CDS YP_645057.1 108805120 4117535 complement(2326744..2327283) 1 NC_008148.1 PFAM: bifunctional deaminase-reductase-like; KEGG: bce:BC3158 pyrimidine reductase; bifunctional deaminase-reductase-like protein 2327283 4117535 Rxyl_2316 Rubrobacter xylanophilus DSM 9941 bifunctional deaminase-reductase-like protein YP_645057.1 2326744 R 266117 CDS YP_645058.1 108805121 4117536 complement(2327364..2328137) 1 NC_008148.1 SMART: Helix-turn-helix, AraC type; KEGG: nfa:nfa53500 putative transcriptional regulator; AraC family transcriptional regulator 2328137 4117536 Rxyl_2317 Rubrobacter xylanophilus DSM 9941 AraC family transcriptional regulator YP_645058.1 2327364 R 266117 CDS YP_645059.1 108805122 4117537 complement(2328305..2330353) 1 NC_008148.1 TIGRFAM: Small GTP-binding protein domain; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2 elongation factor G, domain IV; KEGG: dde:Dde_2741 translation elongation factor G, putative; small GTP-binding protein domain-containing protein 2330353 4117537 Rxyl_2318 Rubrobacter xylanophilus DSM 9941 small GTP-binding protein domain-containing protein YP_645059.1 2328305 R 266117 CDS YP_645060.1 108805123 4117538 complement(2330482..2331165) 1 NC_008148.1 PFAM: peptidase, membrane zinc metallopeptidase, putative; KEGG: tth:TTC0540 hypothetical membrane spanning protein; peptidase, membrane zinc metallopeptidase 2331165 4117538 Rxyl_2319 Rubrobacter xylanophilus DSM 9941 peptidase, membrane zinc metallopeptidase YP_645060.1 2330482 R 266117 CDS YP_645061.1 108805124 4117539 complement(2331249..2331698) 1 NC_008148.1 PFAM: heat shock protein Hsp20; KEGG: dps:DP1866 similar to low molecular weight heat shock protein (HSP17); heat shock protein Hsp20 2331698 4117539 Rxyl_2320 Rubrobacter xylanophilus DSM 9941 heat shock protein Hsp20 YP_645061.1 2331249 R 266117 CDS YP_645062.1 108805125 4117540 2331837..2332217 1 NC_008148.1 hypothetical protein 2332217 4117540 Rxyl_2321 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645062.1 2331837 D 266117 CDS YP_645063.1 108805126 4117541 2332294..2333034 1 NC_008148.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: yps:YPTB3948 Oxa1 family transporter; 60 kDa inner membrane insertion protein 2333034 4117541 Rxyl_2322 Rubrobacter xylanophilus DSM 9941 60 kDa inner membrane insertion protein YP_645063.1 2332294 D 266117 CDS YP_645064.1 108805127 4117542 complement(2334364..2335356) 1 NC_008148.1 PFAM: Transketolase, central region Transketolase-like; KEGG: lic:LIC11898 pyruvate dehydrogenase beta2 subunit protein; transketolase, central region 2335356 4117542 Rxyl_2324 Rubrobacter xylanophilus DSM 9941 transketolase, central region YP_645064.1 2334364 R 266117 CDS YP_645065.1 108805128 4117543 complement(2335361..2336422) 1 NC_008148.1 PFAM: dehydrogenase, E1 component; KEGG: gme:Gmet_2760 dehydrogenase, E1 component; pyruvate dehydrogenase 2336422 4117543 Rxyl_2325 Rubrobacter xylanophilus DSM 9941 pyruvate dehydrogenase YP_645065.1 2335361 R 266117 CDS YP_645066.1 108805129 4117544 complement(2336522..2337136) 1 NC_008148.1 PFAM: Ham1-like protein; KEGG: mka:MK1594 xanthosine triphosphate pyrophosphatase; Ham1-like protein 2337136 4117544 Rxyl_2326 Rubrobacter xylanophilus DSM 9941 Ham1-like protein YP_645066.1 2336522 R 266117 CDS YP_645067.1 108805130 4117545 2337131..2337718 1 NC_008148.1 hypothetical protein 2337718 4117545 Rxyl_2327 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645067.1 2337131 D 266117 CDS YP_645068.1 108805131 4117546 2337725..2339026 1 NC_008148.1 PFAM: aminotransferase, class I and II; KEGG: pac:PPA2337 probable aminotransferase; class I and II aminotransferase 2339026 4117546 Rxyl_2328 Rubrobacter xylanophilus DSM 9941 class I and II aminotransferase YP_645068.1 2337725 D 266117 CDS YP_645069.1 108805132 4117547 2339037..2339993 1 NC_008148.1 KEGG: pca:Pcar_2199 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: protein of unknown function DUF201 D-alanine--D-alanine ligase-like; D-alanine--D-alanine ligase 2339993 4117547 Rxyl_2329 Rubrobacter xylanophilus DSM 9941 D-alanine--D-alanine ligase YP_645069.1 2339037 D 266117 CDS YP_645070.1 108805133 4117548 complement(2339997..2341340) 1 NC_008148.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2341340 4117548 Rxyl_2330 Rubrobacter xylanophilus DSM 9941 tRNA (uracil-5-)-methyltransferase Gid YP_645070.1 2339997 R 266117 CDS YP_645071.1 108805134 4117549 2341405..2342322 1 NC_008148.1 KEGG: gka:GK1493 hypothetical protein; hypothetical protein 2342322 4117549 Rxyl_2331 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645071.1 2341405 D 266117 CDS YP_645072.1 108805135 4117550 complement(2342309..2342722) 1 NC_008148.1 hypothetical protein 2342722 4117550 Rxyl_2332 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645072.1 2342309 R 266117 CDS YP_645073.1 108805136 4117551 complement(2342729..2343508) 1 NC_008148.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 2343508 4117551 Rxyl_2333 Rubrobacter xylanophilus DSM 9941 gluconate 5-dehydrogenase YP_645073.1 2342729 R 266117 CDS YP_645074.1 108805137 4117552 complement(2343528..2343974) 1 NC_008148.1 TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: thioesterase superfamily; KEGG: pfo:Pfl_0258 phenylacetic acid degradation-like protein; phenylacetic acid degradation-like protein 2343974 4117552 Rxyl_2334 Rubrobacter xylanophilus DSM 9941 phenylacetic acid degradation-like protein YP_645074.1 2343528 R 266117 CDS YP_645075.1 108805138 4117553 complement(2344006..2344767) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1655 short chain oxidoreductase; 3-oxoacyl-ACP reductase 2344767 4117553 Rxyl_2335 Rubrobacter xylanophilus DSM 9941 3-oxoacyl-ACP reductase YP_645075.1 2344006 R 266117 CDS YP_645076.1 108805139 4117554 complement(2344772..2345635) 1 NC_008148.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bha:BH1995 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 2345635 4117554 Rxyl_2336 Rubrobacter xylanophilus DSM 9941 3-hydroxyacyl-CoA dehydrogenase YP_645076.1 2344772 R 266117 CDS YP_645077.1 108805140 4117555 complement(2345635..2346696) 1 NC_008148.1 PFAM: aminoglycoside phosphotransferase; KEGG: gka:GK1032 hypothetical protein; aminoglycoside phosphotransferase 2346696 4117555 Rxyl_2337 Rubrobacter xylanophilus DSM 9941 aminoglycoside phosphotransferase YP_645077.1 2345635 R 266117 CDS YP_645078.1 108805141 4115604 complement(2346693..2347457) 1 NC_008148.1 PFAM: 2-phosphosulfolactate phosphatase; KEGG: mta:Moth_0119 2-phosphosulfolactate phosphatase; 2-phosphosulfolactate phosphatase 2347457 4115604 Rxyl_2338 Rubrobacter xylanophilus DSM 9941 2-phosphosulfolactate phosphatase YP_645078.1 2346693 R 266117 CDS YP_645079.1 108805142 4115605 complement(2347551..2349212) 1 NC_008148.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2349212 4115605 Rxyl_2339 Rubrobacter xylanophilus DSM 9941 long-chain-fatty-acid--CoA ligase YP_645079.1 2347551 R 266117 CDS YP_645080.1 108805143 4115606 2349364..2350377 1 NC_008148.1 KEGG: gka:GK1506 phosphotriesterase; TIGRFAM: uncharacterized domain HDIG; PFAM: aryldialkylphosphatase; hypothetical protein 2350377 4115606 Rxyl_2340 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645080.1 2349364 D 266117 CDS YP_645081.1 108805144 4115607 complement(2350374..2351174) 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gka:GK2038 enoyl-CoA hydratase subunit II (phenylacetic acid catabolism); enoyl-CoA hydratase/short chain enoyl-CoA hydratase 2351174 4115607 Rxyl_2341 Rubrobacter xylanophilus DSM 9941 enoyl-CoA hydratase/short chain enoyl-CoA hydratase YP_645081.1 2350374 R 266117 CDS YP_645082.1 108805145 4115608 complement(2351171..2353153) 1 NC_008148.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 2353153 4115608 Rxyl_2342 Rubrobacter xylanophilus DSM 9941 acetoacetyl-CoA synthetase YP_645082.1 2351171 R 266117 CDS YP_645083.1 108805146 4115609 complement(2353176..2353964) 1 NC_008148.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tfu:Tfu_0081 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase 2353964 4115609 Rxyl_2343 Rubrobacter xylanophilus DSM 9941 3-hydroxybutyrate dehydrogenase YP_645083.1 2353176 R 266117 CDS YP_645084.1 108805147 4115610 complement(2354043..2355428) 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bja:bll0889 putative transport protein; major facilitator transporter 2355428 4115610 Rxyl_2344 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645084.1 2354043 R 266117 CDS YP_645085.1 108805148 4115611 complement(2355492..2356964) 1 NC_008148.1 KEGG: ade:Adeh_0244 LigA; LigA 2356964 4115611 Rxyl_2345 Rubrobacter xylanophilus DSM 9941 LigA YP_645085.1 2355492 R 266117 CDS YP_645086.1 108805149 4115612 2357087..2359132 1 NC_008148.1 KEGG: sma:SAV376 hypothetical protein; regulator of polyketide synthase expression-like protein 2359132 4115612 Rxyl_2346 Rubrobacter xylanophilus DSM 9941 regulator of polyketide synthase expression-like protein YP_645086.1 2357087 D 266117 CDS YP_645087.1 108805150 4115613 complement(2359094..2359711) 1 NC_008148.1 PFAM: DSBA oxidoreductase; KEGG: reu:Reut_B4723 DsbA oxidoreductase; DSBA oxidoreductase 2359711 4115613 Rxyl_2347 Rubrobacter xylanophilus DSM 9941 DSBA oxidoreductase YP_645087.1 2359094 R 266117 CDS YP_645088.1 108805151 4115614 2359839..2360720 1 NC_008148.1 PFAM: protein of unknown function DUF81; KEGG: tfu:Tfu_1694 hypothetical protein; hypothetical protein 2360720 4115614 Rxyl_2348 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645088.1 2359839 D 266117 CDS YP_645089.1 108805152 4115615 complement(2360787..2362100) 1 NC_008148.1 PFAM: sulfatase; KEGG: mpa:MAP3791c AtsG; sulfatase 2362100 4115615 Rxyl_2349 Rubrobacter xylanophilus DSM 9941 sulfatase YP_645089.1 2360787 R 266117 CDS YP_645090.1 108805153 4115616 complement(2362097..2362951) 1 NC_008148.1 KEGG: mbo:Mb0303c hypothetical protein; hypothetical protein 2362951 4115616 Rxyl_2350 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645090.1 2362097 R 266117 CDS YP_645091.1 108805154 4115617 2363180..2364310 1 NC_008148.1 PFAM: oxidoreductase, molybdopterin binding; KEGG: ret:RHE_CH02958 putative sulfite oxidase protein; oxidoreductase protein 2364310 4115617 Rxyl_2351 Rubrobacter xylanophilus DSM 9941 oxidoreductase protein YP_645091.1 2363180 D 266117 CDS YP_645092.1 108805155 4115618 2364412..2365293 1 NC_008148.1 PFAM: Rhodanese-like; KEGG: ttj:TTHA1028 thiosulfate sulfurtransferase; thiosulfate sulfurtransferase 2365293 4115618 Rxyl_2352 Rubrobacter xylanophilus DSM 9941 thiosulfate sulfurtransferase YP_645092.1 2364412 D 266117 CDS YP_645093.1 108805156 4115619 2365304..2365828 1 NC_008148.1 PFAM: carbonic anhydrase; KEGG: fra:Francci3_0216 carbonic anhydrase; carbonic anhydrase 2365828 4115619 Rxyl_2353 Rubrobacter xylanophilus DSM 9941 carbonic anhydrase YP_645093.1 2365304 D 266117 CDS YP_645094.1 108805157 4115620 2365825..2366337 1 NC_008148.1 PFAM: OsmC-like protein; KEGG: ade:Adeh_0443 OsmC-like protein; OsmC-like protein 2366337 4115620 Rxyl_2354 Rubrobacter xylanophilus DSM 9941 OsmC-like protein YP_645094.1 2365825 D 266117 CDS YP_645095.1 108805158 4115621 2366411..2366989 1 NC_008148.1 PFAM: adenylylsulfate kinase; KEGG: syn:slr0676 adenylylsulfate 3-phosphotransferase; adenylylsulfate kinase 2366989 4115621 Rxyl_2355 Rubrobacter xylanophilus DSM 9941 adenylylsulfate kinase YP_645095.1 2366411 D 266117 CDS YP_645096.1 108805159 4115622 complement(2367002..2367466) 1 NC_008148.1 PFAM: protein of unknown function UPF0074; KEGG: tfu:Tfu_0800 hypothetical protein; BadM/Rrf2 family transcriptional regulator 2367466 4115622 Rxyl_2356 Rubrobacter xylanophilus DSM 9941 BadM/Rrf2 family transcriptional regulator YP_645096.1 2367002 R 266117 CDS YP_645097.1 108805160 4115642 2367801..2368673 1 NC_008148.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: gme:Gmet_1711 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2368673 4115642 Rxyl_2357 Rubrobacter xylanophilus DSM 9941 L-carnitine dehydratase/bile acid-inducible protein F YP_645097.1 2367801 D 266117 CDS YP_645098.1 108805161 4115643 2368675..2370303 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dra:DR2507 medium-chain fatty acid--CoA ligase; AMP-dependent synthetase and ligase 2370303 4115643 Rxyl_2358 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_645098.1 2368675 D 266117 CDS YP_645099.1 108805162 4115644 2370383..2372170 1 NC_008148.1 PFAM: peptidase S15 X-Pro dipeptidyl-peptidase-like; KEGG: lmo:lmo2755 similar to acylase and diesterase; X-Pro dipeptidyl-peptidase-like protein 2372170 4115644 Rxyl_2359 Rubrobacter xylanophilus DSM 9941 X-Pro dipeptidyl-peptidase-like protein YP_645099.1 2370383 D 266117 CDS YP_645100.1 108805163 4115645 2372218..2373375 1 NC_008148.1 PFAM: Thiolase; KEGG: tth:TTC0330 acetyl-CoA acetyltransferase; acetyl-CoA C-acyltransferase 2373375 4115645 Rxyl_2360 Rubrobacter xylanophilus DSM 9941 acetyl-CoA C-acyltransferase YP_645100.1 2372218 D 266117 CDS YP_645101.1 108805164 4115646 complement(2373383..2374153) 1 NC_008148.1 KEGG: syf:Synpcc7942_1526 hypothetical protein; hypothetical protein 2374153 4115646 Rxyl_2361 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645101.1 2373383 R 266117 CDS YP_645102.1 108805165 4115647 complement(2374229..2374570) 1 NC_008148.1 KEGG: nfa:nfa22990 hypothetical protein; hypothetical protein 2374570 4115647 Rxyl_2362 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645102.1 2374229 R 266117 CDS YP_645103.1 108805166 4115648 complement(2374571..2374786) 1 NC_008148.1 hypothetical protein 2374786 4115648 Rxyl_2363 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645103.1 2374571 R 266117 CDS YP_645104.1 108805167 4115649 complement(2374799..2375194) 1 NC_008148.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: tfu:Tfu_0093 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 2375194 4115649 Rxyl_2364 Rubrobacter xylanophilus DSM 9941 pyridoxamine 5'-phosphate oxidase-like protein YP_645104.1 2374799 R 266117 CDS YP_645105.1 108805168 4115650 complement(2375166..2376062) 1 NC_008148.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: gvi:gll0669 RNA polymerase sigma-70 factor; ECF subfamily RNA polymerase sigma-24 factor 2376062 4115650 Rxyl_2365 Rubrobacter xylanophilus DSM 9941 ECF subfamily RNA polymerase sigma-24 factor YP_645105.1 2375166 R 266117 CDS YP_645106.1 108805169 4115651 complement(2376059..2376505) 1 NC_008148.1 hypothetical protein 2376505 4115651 Rxyl_2366 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645106.1 2376059 R 266117 CDS YP_645107.1 108805170 4115652 complement(2376593..2376940) 1 NC_008148.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: ade:Adeh_1639 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 2376940 4115652 Rxyl_2367 Rubrobacter xylanophilus DSM 9941 4-hydroxybenzoyl-CoA thioesterase YP_645107.1 2376593 R 266117 CDS YP_645108.1 108805171 4115653 complement(2376991..2377767) 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase; short chain enoyl-CoA hydratase 2377767 4115653 Rxyl_2368 Rubrobacter xylanophilus DSM 9941 short chain enoyl-CoA hydratase YP_645108.1 2376991 R 266117 CDS YP_645109.1 108805172 4115654 complement(2377849..2378250) 1 NC_008148.1 TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; PFAM: cobalamin B12-binding; KEGG: tte:TTE2388 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); methylmalonyl-CoA mutase-like protein 2378250 4115654 Rxyl_2369 Rubrobacter xylanophilus DSM 9941 methylmalonyl-CoA mutase-like protein YP_645109.1 2377849 R 266117 CDS YP_645110.1 108805173 4115655 complement(2378263..2379150) 1 NC_008148.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sth:STH451 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 2379150 4115655 Rxyl_2370 Rubrobacter xylanophilus DSM 9941 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_645110.1 2378263 R 266117 CDS YP_645111.1 108805174 4115656 complement(2379158..2379418) 1 NC_008148.1 hypothetical protein 2379418 4115656 Rxyl_2371 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645111.1 2379158 R 266117 CDS YP_645112.1 108805175 4115657 complement(2379420..2380109) 1 NC_008148.1 KEGG: ava:Ava_0557 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 2380109 4115657 Rxyl_2372 Rubrobacter xylanophilus DSM 9941 pyridoxamine 5'-phosphate oxidase YP_645112.1 2379420 R 266117 CDS YP_645113.1 108805176 4115658 2380149..2381285 1 NC_008148.1 KEGG: cdi:DIP2068 hypothetical protein; hypothetical protein 2381285 4115658 Rxyl_2373 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645113.1 2380149 D 266117 CDS YP_645114.1 108805177 4115659 complement(2381282..2381680) 1 NC_008148.1 PFAM: Endoribonuclease L-PSP; KEGG: syf:Synpcc7942_2408 hypothetical protein; endoribonuclease L-PSP 2381680 4115659 Rxyl_2374 Rubrobacter xylanophilus DSM 9941 endoribonuclease L-PSP YP_645114.1 2381282 R 266117 CDS YP_645115.1 108805178 4115660 complement(2381677..2384535) 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: gvi:glr3436 probable oxidoreductase; FAD linked oxidase-like protein 2384535 4115660 Rxyl_2375 Rubrobacter xylanophilus DSM 9941 FAD linked oxidase-like protein YP_645115.1 2381677 R 266117 CDS YP_645116.1 108805179 4115661 2384640..2385965 1 NC_008148.1 KEGG: sco:SCO7492 hypothetical protein; hypothetical protein 2385965 4115661 Rxyl_2376 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645116.1 2384640 D 266117 CDS YP_645117.1 108805180 4115623 2385971..2387059 1 NC_008148.1 PFAM: conserved hypothetical protein 374; KEGG: mac:MA2251 hypothetical protein; hypothetical protein 2387059 4115623 Rxyl_2377 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645117.1 2385971 D 266117 CDS YP_645118.1 108805181 4115624 complement(2387050..2387865) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: ssp:SSP0236 similar to quorum-quenching N-acyl homoserine lactonase; beta-lactamase-like protein 2387865 4115624 Rxyl_2378 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_645118.1 2387050 R 266117 CDS YP_645119.1 108805182 4115625 2387951..2389045 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nar:Saro_0513 alcohol dehydrogenase, zinc-containing; zinc-binding alcohol dehydrogenase 2389045 4115625 Rxyl_2379 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_645119.1 2387951 D 266117 CDS YP_645120.1 108805183 4115626 2389069..2390532 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_A2614 aldehyde dehydrogenase (NAD+); betaine-aldehyde dehydrogenase 2390532 4115626 Rxyl_2380 Rubrobacter xylanophilus DSM 9941 betaine-aldehyde dehydrogenase YP_645120.1 2389069 D 266117 CDS YP_645121.1 108805184 4115627 complement(2390541..2391827) 1 NC_008148.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dre:404618 zgc:77479; iron-containing alcohol dehydrogenase 2391827 4115627 Rxyl_2381 Rubrobacter xylanophilus DSM 9941 iron-containing alcohol dehydrogenase YP_645121.1 2390541 R 266117 CDS YP_645122.1 108805185 4115628 2392023..2393708 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV6612 putative acyl-CoA synthetase, long chain-fatty acid:CoA ligase; AMP-dependent synthetase and ligase 2393708 4115628 Rxyl_2382 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_645122.1 2392023 D 266117 CDS YP_645123.1 108805186 4115629 2393709..2395424 1 NC_008148.1 PFAM: peptidase S15 X-Pro dipeptidyl-peptidase-like; KEGG: cya:CYA_1044 X-Pro dipeptidyl-peptidase (S15 family); peptidase S15 2395424 4115629 Rxyl_2383 Rubrobacter xylanophilus DSM 9941 peptidase S15 YP_645123.1 2393709 D 266117 CDS YP_645124.1 108805187 4115630 2395552..2396448 1 NC_008148.1 PFAM: E3 binding; KEGG: bca:BCE1428 PhaR protein; E3 binding protein 2396448 4115630 Rxyl_2384 Rubrobacter xylanophilus DSM 9941 E3 binding protein YP_645124.1 2395552 D 266117 CDS YP_645125.1 108805188 4115631 2396452..2397528 1 NC_008148.1 TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold PHB de-polymerase-like; KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 2397528 4115631 Rxyl_2385 Rubrobacter xylanophilus DSM 9941 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit YP_645125.1 2396452 D 266117 CDS YP_645126.1 108805189 4115632 complement(2397552..2399396) 1 NC_008148.1 TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold Poly-beta-hydroxybutyrate polymerase-like; KEGG: rru:Rru_A2413 poly(R)-hydroxyalkanoic acid synthase, class I; Poly(R)-hydroxyalkanoic acid synthase, class I 2399396 4115632 Rxyl_2386 Rubrobacter xylanophilus DSM 9941 Poly(R)-hydroxyalkanoic acid synthase, class I YP_645126.1 2397552 R 266117 CDS YP_645127.1 108805190 4115633 2399499..2400707 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: afu:AF0991 glutaryl-CoA dehydrogenase (GcdH); acyl-CoA dehydrogenase-like protein 2400707 4115633 Rxyl_2387 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_645127.1 2399499 D 266117 CDS YP_645128.1 108805191 4115634 2400804..2401310 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_2128 hypothetical protein; N-acetyltransferase GCN5 2401310 4115634 Rxyl_2388 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_645128.1 2400804 D 266117 CDS YP_645129.1 108805192 4115635 complement(2401348..2402556) 1 NC_008148.1 PFAM: Thiolase; KEGG: tte:TTE0549 Acetyl-CoA acetyltransferases; acetyl-CoA acetyltransferase 2402556 4115635 Rxyl_2389 Rubrobacter xylanophilus DSM 9941 acetyl-CoA acetyltransferase YP_645129.1 2401348 R 266117 CDS YP_645130.1 108805193 4115636 complement(2402657..2402989) 1 NC_008148.1 hypothetical protein 2402989 4115636 Rxyl_2390 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645130.1 2402657 R 266117 CDS YP_645131.1 108805194 4115637 complement(2403132..2403461) 1 NC_008148.1 hypothetical protein 2403461 4115637 Rxyl_2391 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645131.1 2403132 R 266117 CDS YP_645132.1 108805195 4115638 complement(2403489..2403938) 1 NC_008148.1 PFAM: transcriptional regulator PadR-like; KEGG: bca:BCE1427 transcriptional regulator, PadR family; PadR family transcriptional regulator 2403938 4115638 Rxyl_2392 Rubrobacter xylanophilus DSM 9941 PadR family transcriptional regulator YP_645132.1 2403489 R 266117 CDS YP_645133.1 108805196 4115639 2404129..2404872 1 NC_008148.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2404872 fabG 4115639 fabG Rubrobacter xylanophilus DSM 9941 3-ketoacyl-ACP reductase YP_645133.1 2404129 D 266117 CDS YP_645134.1 108805197 4115640 2405045..2405857 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tfu:Tfu_2308 putative 3-oxoacyl-ACP reductase; short-chain dehydrogenase/reductase SDR 2405857 4115640 Rxyl_2394 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645134.1 2405045 D 266117 CDS YP_645135.1 108805198 4115641 2406226..2406984 1 NC_008148.1 KEGG: mta:Moth_0547 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2406984 4115641 Rxyl_2395 Rubrobacter xylanophilus DSM 9941 thiamine-phosphate pyrophosphorylase YP_645135.1 2406226 D 266117 CDS YP_645136.2 161612309 4115355 2406893..2407876 1 NC_008148.1 fusion of thiS and thiG; functions in thiamine (vitamin B1) biosynthesis; bifunctional sulfur carrier protein/thiazole synthase 2407876 4115355 Rxyl_2396 Rubrobacter xylanophilus DSM 9941 bifunctional sulfur carrier protein/thiazole synthase YP_645136.2 2406893 D 266117 CDS YP_645137.1 108805200 4115356 2407939..2408805 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mbo:Mb0592 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2408805 4115356 Rxyl_2397 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_645137.1 2407939 D 266117 CDS YP_645138.1 108805201 4115357 complement(2408724..2409731) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: gka:GK1034 NADPH:quinone oxidoreductase; zinc-binding alcohol dehydrogenase 2409731 4115357 Rxyl_2398 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_645138.1 2408724 R 266117 CDS YP_645139.1 108805202 4115358 2409783..2410952 1 NC_008148.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mag:amb1653 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 2410952 4115358 Rxyl_2399 Rubrobacter xylanophilus DSM 9941 L-carnitine dehydratase/bile acid-inducible protein F YP_645139.1 2409783 D 266117 CDS YP_645140.1 108805203 4115359 2411043..2411978 1 NC_008148.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2411978 prpB 4115359 prpB Rubrobacter xylanophilus DSM 9941 2-methylisocitrate lyase YP_645140.1 2411043 D 266117 CDS YP_645141.1 108805204 4115360 2411982..2413097 1 NC_008148.1 KEGG: ilo:IL1426 citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase 2413097 4115360 Rxyl_2401 Rubrobacter xylanophilus DSM 9941 2-methylcitrate synthase YP_645141.1 2411982 D 266117 CDS YP_645142.1 108805205 4115361 2413100..2414512 1 NC_008148.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 2414512 prpD 4115361 prpD Rubrobacter xylanophilus DSM 9941 2-methylcitrate dehydratase YP_645142.1 2413100 D 266117 CDS YP_645143.1 108805206 4115362 2414623..2415618 1 NC_008148.1 PFAM: dehydrogenase, E1 component; KEGG: bur:Bcep18194_A5140 pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase 2415618 4115362 Rxyl_2403 Rubrobacter xylanophilus DSM 9941 pyruvate dehydrogenase YP_645143.1 2414623 D 266117 CDS YP_645144.1 108805207 4115363 2415654..2416673 1 NC_008148.1 PFAM: Transketolase, central region Transketolase-like; KEGG: bur:Bcep18194_A5139 acetoin/2,6-dichlorophenolindophenol oxidoreductase beta subunit; transketolase, central region 2416673 4115363 Rxyl_2404 Rubrobacter xylanophilus DSM 9941 transketolase, central region YP_645144.1 2415654 D 266117 CDS YP_645145.1 108805208 4115364 2416684..2417793 1 NC_008148.1 PFAM: alpha/beta hydrolase fold biotin/lipoyl attachment; KEGG: pae:PA4152 probable hydrolase; branched-chain alpha-keto acid dehydrogenase subunit E2 2417793 4115364 Rxyl_2405 Rubrobacter xylanophilus DSM 9941 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_645145.1 2416684 D 266117 CDS YP_645146.1 108805209 4115365 2417786..2418799 1 NC_008148.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pca:Pcar_0341 acetoin catabolism protein X; ATP-NAD/AcoX kinase 2418799 4115365 Rxyl_2406 Rubrobacter xylanophilus DSM 9941 ATP-NAD/AcoX kinase YP_645146.1 2417786 D 266117 CDS YP_645147.1 108805210 4115366 complement(2418891..2419694) 1 NC_008148.1 PFAM: putative cyclase; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase; putative cyclase 2419694 4115366 Rxyl_2407 Rubrobacter xylanophilus DSM 9941 putative cyclase YP_645147.1 2418891 R 266117 CDS YP_645148.1 108805211 4115367 2419814..2421124 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: sma:SAV6941 putative transmembrane efflux protein; major facilitator transporter 2421124 4115367 Rxyl_2408 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645148.1 2419814 D 266117 CDS YP_645149.1 108805212 4115368 2421124..2421903 1 NC_008148.1 PFAM: protein of unknown function DUF1445; KEGG: bld:BLi00500 hypothetical protein; hypothetical protein 2421903 4115368 Rxyl_2409 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645149.1 2421124 D 266117 CDS YP_645150.1 108805213 4115369 2421900..2423876 1 NC_008148.1 PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: gvi:gll2098 N-methylhydantoinase A, putative; 5-oxoprolinase 2423876 4115369 Rxyl_2410 Rubrobacter xylanophilus DSM 9941 5-oxoprolinase YP_645150.1 2421900 D 266117 CDS YP_645151.1 108805214 4115370 2423873..2425420 1 NC_008148.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: hma:pNG7165 N-methylhydantoinase B; 5-oxoprolinase 2425420 4115370 Rxyl_2411 Rubrobacter xylanophilus DSM 9941 5-oxoprolinase YP_645151.1 2423873 D 266117 CDS YP_645152.1 108805215 4115371 2425446..2425934 1 NC_008148.1 PFAM: MOSC; KEGG: sil:SPOA0174 MOSC domain protein; MOSC domain-containing protein 2425934 4115371 Rxyl_2412 Rubrobacter xylanophilus DSM 9941 MOSC domain-containing protein YP_645152.1 2425446 D 266117 CDS YP_645153.1 108805216 4115372 complement(2425931..2427169) 1 NC_008148.1 PFAM: glycoside hydrolase 15-related; KEGG: mac:MA1190 glucan 1,4-alpha-glucosidase; glycoside hydrolase 15-like protein 2427169 4115372 Rxyl_2413 Rubrobacter xylanophilus DSM 9941 glycoside hydrolase 15-like protein YP_645153.1 2425931 R 266117 CDS YP_645154.1 108805217 4115373 complement(2427376..2428560) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_2008 hypothetical protein; major facilitator transporter 2428560 4115373 Rxyl_2414 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645154.1 2427376 R 266117 CDS YP_645155.1 108805218 4115374 2428644..2429411 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV6435 putative short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR 2429411 4115374 Rxyl_2415 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645155.1 2428644 D 266117 CDS YP_645156.1 108805219 4115336 complement(2429359..2430822) 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: ade:Adeh_0229 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2430822 4115336 Rxyl_2416 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_645156.1 2429359 R 266117 CDS YP_645157.1 108805220 4115337 2431538..2432776 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: gka:GK1028 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase-like protein 2432776 4115337 Rxyl_2418 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_645157.1 2431538 D 266117 CDS YP_645158.1 108805221 4115338 2432867..2434261 1 NC_008148.1 PFAM: short chain fatty acid transporter; KEGG: bba:Bd0245 short-chain fatty acids transporter; short chain fatty acid transporter 2434261 4115338 Rxyl_2419 Rubrobacter xylanophilus DSM 9941 short chain fatty acid transporter YP_645158.1 2432867 D 266117 CDS YP_645159.1 108805222 4115339 2434324..2434536 1 NC_008148.1 hypothetical protein 2434536 4115339 Rxyl_2420 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645159.1 2434324 D 266117 CDS YP_645160.1 108805223 4115340 complement(2434533..2435183) 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: blo:BL0498 possible sortase-like protein; peptidase C60, sortase A and B 2435183 4115340 Rxyl_2421 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_645160.1 2434533 R 266117 CDS YP_645161.1 108805224 4115341 complement(2435214..2436149) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2436149 4115341 Rxyl_2422 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_645161.1 2435214 R 266117 CDS YP_645162.1 108805225 4115342 complement(2436152..2437099) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1129 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2437099 4115342 Rxyl_2423 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_645162.1 2436152 R 266117 CDS YP_645163.1 108805226 4115343 complement(2437226..2438923) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: sth:STH2315 dipeptide ABC transporter substrate-binding protein; twin-arginine translocation pathway signal protein 2438923 4115343 Rxyl_2424 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_645163.1 2437226 R 266117 CDS YP_645164.1 108805227 4115344 complement(2439010..2439699) 1 NC_008148.1 PFAM: Endonuclease V; KEGG: gvi:glr4243 endonuclease V; endonuclease V 2439699 4115344 Rxyl_2425 Rubrobacter xylanophilus DSM 9941 endonuclease V YP_645164.1 2439010 R 266117 CDS YP_645165.1 108805228 4115345 complement(2439948..2441453) 1 NC_008148.1 PFAM: oxidoreductase, molybdopterin binding Mo-co oxidoreductase dimerisation domain; KEGG: sco:SCO0555 membrane-bound oxidoreductase; oxidoreductase protein 2441453 4115345 Rxyl_2426 Rubrobacter xylanophilus DSM 9941 oxidoreductase protein YP_645165.1 2439948 R 266117 CDS YP_645166.1 108805229 4115346 complement(2441661..2442458) 1 NC_008148.1 KEGG: bur:Bcep18194_B0247 hypothetical protein; hypothetical protein 2442458 4115346 Rxyl_2427 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645166.1 2441661 R 266117 CDS YP_645167.1 108805230 4115347 2442806..2446012 1 NC_008148.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: tfu:Tfu_1120 isoleucyl-tRNA synthetase, class Ia; isoleucyl-tRNA synthetase 2446012 4115347 Rxyl_2428 Rubrobacter xylanophilus DSM 9941 isoleucyl-tRNA synthetase YP_645167.1 2442806 D 266117 CDS YP_645168.1 108805231 4115348 2446104..2446556 1 NC_008148.1 hypothetical protein 2446556 4115348 Rxyl_2429 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645168.1 2446104 D 266117 CDS YP_645169.1 108805232 4115349 complement(2446553..2446963) 1 NC_008148.1 hypothetical protein 2446963 4115349 Rxyl_2430 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645169.1 2446553 R 266117 CDS YP_645170.1 108805233 4115350 2446998..2447552 1 NC_008148.1 KEGG: ttj:TTHA1817 putative hydrolase (HD domain); hypothetical protein 2447552 4115350 Rxyl_2431 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645170.1 2446998 D 266117 CDS YP_645171.1 108805234 4115351 2447582..2447932 1 NC_008148.1 KEGG: sco:SCO5706 probable translational initiation factor; putative translational initiation factor 2447932 4115351 Rxyl_2432 Rubrobacter xylanophilus DSM 9941 putative translational initiation factor YP_645171.1 2447582 D 266117 CDS YP_645172.1 108805235 4115352 complement(2447910..2448746) 1 NC_008148.1 KEGG: sth:STH849 formamidopyrimidine-DNA glycosidase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase zinc finger, Fpg-type; formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase 2448746 4115352 Rxyl_2433 Rubrobacter xylanophilus DSM 9941 formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase YP_645172.1 2447910 R 266117 CDS YP_645173.1 108805236 4115353 complement(2448749..2449597) 1 NC_008148.1 TIGRFAM: Cof protein HAD-superfamily hydrolase subfamily IIB; PFAM: Haloacid dehalogenase-like hydrolase sucrose-6F-phosphate phosphohydrolase Haloacid dehalogenase-like hydrolase, type 3; KEGG: gvi:glr0833 hypothetical protein; Cof protein 2449597 4115353 Rxyl_2434 Rubrobacter xylanophilus DSM 9941 Cof protein YP_645173.1 2448749 R 266117 CDS YP_645174.1 108805237 4115354 complement(2449662..2450000) 1 NC_008148.1 hypothetical protein 2450000 4115354 Rxyl_2435 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645174.1 2449662 R 266117 CDS YP_645175.1 108805238 4115505 complement(2450045..2450728) 1 NC_008148.1 hypothetical protein 2450728 4115505 Rxyl_2436 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645175.1 2450045 R 266117 CDS YP_645176.1 108805239 4115506 2450867..2451622 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: noc:Noc_1448 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein domain-containing protein 2451622 4115506 Rxyl_2437 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_645176.1 2450867 D 266117 CDS YP_645177.1 108805240 4115507 2451624..2453027 1 NC_008148.1 KEGG: noc:Noc_1451 hypothetical protein; hypothetical protein 2453027 4115507 Rxyl_2438 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645177.1 2451624 D 266117 CDS YP_645178.1 108805241 4115508 2453200..2454345 1 NC_008148.1 hypothetical protein 2454345 4115508 Rxyl_2439 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645178.1 2453200 D 266117 CDS YP_645179.1 108805242 4115509 2454499..2455395 1 NC_008148.1 PFAM: peptidase S15; KEGG: bur:Bcep18194_B2670 alpha/beta hydrolase; peptidase S15 2455395 4115509 Rxyl_2440 Rubrobacter xylanophilus DSM 9941 peptidase S15 YP_645179.1 2454499 D 266117 CDS YP_645180.1 108805243 4115510 2455654..2455887 1 NC_008148.1 TIGRFAM: Putative regulatory protein, FmdB; KEGG: sco:SCO2357 hypothetical protein; FmdB transcriptional regulator 2455887 4115510 Rxyl_2441 Rubrobacter xylanophilus DSM 9941 FmdB transcriptional regulator YP_645180.1 2455654 D 266117 CDS YP_645181.1 108805244 4115511 2455892..2456287 1 NC_008148.1 PFAM: protein of unknown function DUF309; KEGG: gme:Gmet_3375 protein of unknown function DUF309; hypothetical protein 2456287 4115511 Rxyl_2442 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645181.1 2455892 D 266117 CDS YP_645182.1 108805245 4115512 2456416..2457243 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE0552 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein domain-containing protein 2457243 4115512 Rxyl_2443 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_645182.1 2456416 D 266117 CDS YP_645183.1 108805246 4115513 2457791..2459494 1 NC_008148.1 KEGG: mta:Moth_0027 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central region DNA polymerase III, delta; SMART: ATPase; DNA polymerase III subunits gamma and tau 2459494 4115513 Rxyl_2444 Rubrobacter xylanophilus DSM 9941 DNA polymerase III subunits gamma and tau YP_645183.1 2457791 D 266117 CDS YP_645184.1 108805247 4115514 complement(2459505..2462039) 1 NC_008148.1 PFAM: peptidase M23B Lytic transglycosylase, catalytic; KEGG: mta:Moth_0315 peptidase M23B; peptidase M23B 2462039 4115514 Rxyl_2445 Rubrobacter xylanophilus DSM 9941 peptidase M23B YP_645184.1 2459505 R 266117 CDS YP_645185.1 108805248 4115515 complement(2462124..2462789) 1 NC_008148.1 KEGG: dme:CG4898-PK CG4898 gene product from transcript CG4898-RK; hypothetical protein 2462789 4115515 Rxyl_2446 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645185.1 2462124 R 266117 CDS YP_645186.1 108805249 4115516 2462939..2463529 1 NC_008148.1 KEGG: gka:GK3040 hypothetical protein; hypothetical protein 2463529 4115516 Rxyl_2447 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645186.1 2462939 D 266117 CDS YP_645187.1 108805250 4115517 2463533..2463901 1 NC_008148.1 KEGG: gka:GK3041 hypothetical protein; hypothetical protein 2463901 4115517 Rxyl_2448 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645187.1 2463533 D 266117 CDS YP_645188.1 108805251 4115518 complement(2463898..2464488) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV4903 putative TetR-family transcriptional regulator; TetR family transcriptional regulator 2464488 4115518 Rxyl_2449 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_645188.1 2463898 R 266117 CDS YP_645189.1 108805252 4115519 complement(2464649..2464891) 1 NC_008148.1 hypothetical protein 2464891 4115519 Rxyl_2450 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645189.1 2464649 R 266117 CDS YP_645190.1 108805253 4115520 2465005..2465658 1 NC_008148.1 hypothetical protein 2465658 4115520 Rxyl_2451 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645190.1 2465005 D 266117 CDS YP_645191.1 108805254 4115521 complement(2465606..2466358) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ilo:IL1485 short chain dehydrogenase family protein; short chain dehydrogenase 2466358 4115521 Rxyl_2452 Rubrobacter xylanophilus DSM 9941 short chain dehydrogenase YP_645191.1 2465606 R 266117 CDS YP_645192.1 108805255 4115522 complement(2466361..2468469) 1 NC_008148.1 PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sru:SRU_1459 fatty oxidation complex, alpha subunit; short chain enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 2468469 4115522 Rxyl_2453 Rubrobacter xylanophilus DSM 9941 short chain enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase YP_645192.1 2466361 R 266117 CDS YP_645193.1 108805256 4115523 complement(2468473..2469783) 1 NC_008148.1 PFAM: Thiolase; KEGG: sru:SRU_1460 fatty oxidation complex, beta subunit; 3-ketoacyl-CoA thiolase 2469783 4115523 Rxyl_2454 Rubrobacter xylanophilus DSM 9941 3-ketoacyl-CoA thiolase YP_645193.1 2468473 R 266117 CDS YP_645194.1 108805257 4115524 complement(2469795..2470991) 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE0723 putative glutaryl-CoA dehydrogenase precursor; acyl-CoA dehydrogenase-like protein 2470991 4115524 Rxyl_2455 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_645194.1 2469795 R 266117 CDS YP_645195.1 108805258 4115298 complement(2471050..2472675) 1 NC_008148.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate; succinate-semialdehyde dehydrogenase 2472675 gabD2 4115298 gabD2 Rubrobacter xylanophilus DSM 9941 succinate-semialdehyde dehydrogenase YP_645195.1 2471050 R 266117 CDS YP_645196.1 108805259 4115299 complement(2472684..2473559) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gga:421130 similar to Zgc:63829; short-chain dehydrogenase/reductase SDR 2473559 4115299 Rxyl_2457 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645196.1 2472684 R 266117 CDS YP_645197.1 108805260 4115300 2473813..2475651 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: plt:Plut_0972 long-chain fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 2475651 4115300 Rxyl_2458 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_645197.1 2473813 D 266117 CDS YP_645198.1 108805261 4115301 complement(2475706..2476056) 1 NC_008148.1 PFAM: Sterol-binding; KEGG: ade:Adeh_2343 putative sterol carrier protein; sterol-binding protein 2476056 4115301 Rxyl_2459 Rubrobacter xylanophilus DSM 9941 sterol-binding protein YP_645198.1 2475706 R 266117 CDS YP_645199.1 108805262 4115302 2476394..2476894 1 NC_008148.1 PFAM: protein of unknown function DUF151; KEGG: aae:aq_283 hypothetical protein; hypothetical protein 2476894 4115302 Rxyl_2460 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645199.1 2476394 D 266117 CDS YP_645200.1 108805263 4115303 2477006..2477923 1 NC_008148.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: rru:Rru_A0440 xylose isomerase-like TIM barrel; xylose isomerase-like protein 2477923 4115303 Rxyl_2461 Rubrobacter xylanophilus DSM 9941 xylose isomerase-like protein YP_645200.1 2477006 D 266117 CDS YP_645201.1 108805264 4115304 complement(2477933..2478181) 1 NC_008148.1 hypothetical protein 2478181 4115304 Rxyl_2462 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645201.1 2477933 R 266117 CDS YP_645202.1 108805265 4115305 complement(2478195..2479259) 1 NC_008148.1 KEGG: sru:SRU_2493 uncharacterized protein family UPF0027; hypothetical protein 2479259 4115305 Rxyl_2463 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645202.1 2478195 R 266117 CDS YP_645203.1 108805266 4115306 complement(2479275..2481017) 1 NC_008148.1 PFAM: biotin/lipoyl attachment phosphoribosylglycinamide synthetase ATP-dependent carboxylate-amine ligase-like, ATP-grasp Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like; KEGG: hma:rrnB0263 carbamoyl phosphate synthase L chain; carbamoyl-phosphate synthase L chain, ATP-binding protein 2481017 4115306 Rxyl_2464 Rubrobacter xylanophilus DSM 9941 carbamoyl-phosphate synthase L chain, ATP-binding protein YP_645203.1 2479275 R 266117 CDS YP_645204.1 108805267 4115307 complement(2481018..2481239) 1 NC_008148.1 hypothetical protein 2481239 4115307 Rxyl_2465 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645204.1 2481018 R 266117 CDS YP_645205.1 108805268 4115308 complement(2481236..2482888) 1 NC_008148.1 PFAM: carboxyl transferase; KEGG: nph:NP4364A acyl-CoA carboxylase 2, carboxyltransferase component (beta subunit); carboxyl transferase 2482888 4115308 Rxyl_2466 Rubrobacter xylanophilus DSM 9941 carboxyl transferase YP_645205.1 2481236 R 266117 CDS YP_645206.1 108805269 4115309 2482919..2484028 1 NC_008148.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: gka:GK2381 leucine dehydrogenase; leucine dehydrogenase 2484028 4115309 Rxyl_2467 Rubrobacter xylanophilus DSM 9941 leucine dehydrogenase YP_645206.1 2482919 D 266117 CDS YP_645207.1 108805270 4115310 2484312..2485298 1 NC_008148.1 PFAM: periplasmic binding protein; KEGG: sth:STH1929 iron ABC transporter substrate-binding protein; periplasmic binding protein 2485298 4115310 Rxyl_2468 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein YP_645207.1 2484312 D 266117 CDS YP_645208.1 108805271 4115311 complement(2485305..2486180) 1 NC_008148.1 KEGG: mta:Moth_0141 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantothenate synthetase 2486180 4115311 Rxyl_2469 Rubrobacter xylanophilus DSM 9941 pantothenate synthetase YP_645208.1 2485305 R 266117 CDS YP_645209.1 108805272 4115312 complement(2486177..2487004) 1 NC_008148.1 PFAM: cobalt transport protein; KEGG: tte:TTE2259 ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt transport protein 2487004 4115312 Rxyl_2470 Rubrobacter xylanophilus DSM 9941 cobalt transport protein YP_645209.1 2486177 R 266117 CDS YP_645210.1 108805273 4115313 complement(2487004..2487870) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cpe:CPE2373 probable ABC transporter; ABC transporter-like protein 2487870 4115313 Rxyl_2471 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645210.1 2487004 R 266117 CDS YP_645211.1 108805274 4115314 complement(2487867..2488721) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tte:TTE2261 ABC-type cobalt transport system, ATPase component; ABC transporter-like protein 2488721 4115314 Rxyl_2472 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645211.1 2487867 R 266117 CDS YP_645212.1 108805275 4115315 complement(2488726..2489313) 1 NC_008148.1 KEGG: sth:STH1901 hypothetical protein; hypothetical protein 2489313 4115315 Rxyl_2473 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645212.1 2488726 R 266117 CDS YP_645213.1 108805276 4115316 complement(2489392..2490183) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sai:Saci_2130 oxidoreductase; short-chain dehydrogenase/reductase SDR 2490183 4115316 Rxyl_2474 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645213.1 2489392 R 266117 CDS YP_645214.1 108805277 4114742 complement(2490185..2491447) 1 NC_008148.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20 peptidase dimerisation; KEGG: mlo:mlr1185 succinyl-diaminopimelate desuccinylase; acetylornithine deacetylase 2491447 4114742 Rxyl_2475 Rubrobacter xylanophilus DSM 9941 acetylornithine deacetylase YP_645214.1 2490185 R 266117 CDS YP_645215.1 108805278 4114743 complement(2491526..2492857) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A2617 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter 2492857 4114743 Rxyl_2476 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645215.1 2491526 R 266117 CDS YP_645216.1 108805279 4114744 complement(2492943..2494574) 1 NC_008148.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: gka:GK0373 acetolactate synthaselarge subunit; thiamine pyrophosphate enzyme-like TPP binding region 2494574 4114744 Rxyl_2477 Rubrobacter xylanophilus DSM 9941 thiamine pyrophosphate enzyme-like TPP binding region YP_645216.1 2492943 R 266117 CDS YP_645217.1 108805280 4114745 complement(2494656..2495981) 1 NC_008148.1 PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: sth:STH2160 branched-chain alpha-keto acid dehydrogenase E2; branched-chain alpha-keto acid dehydrogenase E2 component 2495981 4114745 Rxyl_2478 Rubrobacter xylanophilus DSM 9941 branched-chain alpha-keto acid dehydrogenase E2 component YP_645217.1 2494656 R 266117 CDS YP_645218.1 108805281 4114746 complement(2495993..2496979) 1 NC_008148.1 PFAM: Transketolase, central region Transketolase-like; KEGG: oih:OB1865 branched-chain alpha-keto acid dehydrogenase E1 beta chain (3-methyl-2-oxobutanoate dehydrogenase (lipoamide) ); branched-chain alpha-keto acid dehydrogenase E1 component 2496979 4114746 Rxyl_2479 Rubrobacter xylanophilus DSM 9941 branched-chain alpha-keto acid dehydrogenase E1 component YP_645218.1 2495993 R 266117 CDS YP_645219.1 108805282 4114747 complement(2496982..2497983) 1 NC_008148.1 PFAM: dehydrogenase, E1 component; KEGG: bha:BH2763 branched-chain alpha-keto acid dehydrogenase E1; branched-chain alpha-keto acid dehydrogenase E1 component 2497983 4114747 Rxyl_2480 Rubrobacter xylanophilus DSM 9941 branched-chain alpha-keto acid dehydrogenase E1 component YP_645219.1 2496982 R 266117 CDS YP_645220.1 108805283 4114748 complement(2498120..2499817) 1 NC_008148.1 KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 2499817 4114748 Rxyl_2481 Rubrobacter xylanophilus DSM 9941 methylmalonyl-CoA mutase YP_645220.1 2498120 R 266117 CDS YP_645221.1 108805284 4114749 complement(2499897..2501084) 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase; butyryl-CoA dehydrogenase 2501084 4114749 Rxyl_2482 Rubrobacter xylanophilus DSM 9941 butyryl-CoA dehydrogenase YP_645221.1 2499897 R 266117 CDS YP_645222.1 108805285 4114750 complement(2501139..2502077) 1 NC_008148.1 KEGG: neu:NE0117 hypothetical protein; hypothetical protein 2502077 4114750 Rxyl_2483 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645222.1 2501139 R 266117 CDS YP_645223.1 108805286 4114751 complement(2502079..2502549) 1 NC_008148.1 KEGG: mth:MTH1076 hypothetical protein; hypothetical protein 2502549 4114751 Rxyl_2484 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645223.1 2502079 R 266117 CDS YP_645224.1 108805287 4114752 complement(2503764..2504585) 1 NC_008148.1 PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase 2504585 4114752 Rxyl_2486 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_645224.1 2503764 R 266117 CDS YP_645225.1 108805288 4114753 complement(2505226..2505852) 1 NC_008148.1 KEGG: cef:CE1567 putative transposase; putative transposase 2505852 4114753 Rxyl_2488 Rubrobacter xylanophilus DSM 9941 putative transposase YP_645225.1 2505226 R 266117 CDS YP_645226.1 108805289 4114754 2505893..2506216 1 NC_008148.1 hypothetical protein 2506216 4114754 Rxyl_2489 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645226.1 2505893 D 266117 CDS YP_645227.1 108805290 4114755 2506315..2506515 1 NC_008148.1 hypothetical protein 2506515 4114755 Rxyl_2490 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645227.1 2506315 D 266117 CDS YP_645228.1 108805291 4114756 2506563..2506814 1 NC_008148.1 hypothetical protein 2506814 4114756 Rxyl_2491 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645228.1 2506563 D 266117 CDS YP_645229.1 108805292 4114757 2506989..2507414 1 NC_008148.1 hypothetical protein 2507414 4114757 Rxyl_2493 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645229.1 2506989 D 266117 CDS YP_645230.1 108805293 4114758 2507596..2508837 1 NC_008148.1 PFAM: FAD dependent oxidoreductase; KEGG: tcx:Tcr_1351 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2508837 4114758 Rxyl_2494 Rubrobacter xylanophilus DSM 9941 FAD dependent oxidoreductase YP_645230.1 2507596 D 266117 CDS YP_645231.1 108805294 4114759 2508857..2509123 1 NC_008148.1 KEGG: aci:ACIAD2551 sarcosine oxidase subunit D; sarcosine oxidase subunit delta 2509123 4114759 Rxyl_2495 Rubrobacter xylanophilus DSM 9941 sarcosine oxidase subunit delta YP_645231.1 2508857 D 266117 CDS YP_645232.1 108805295 4114760 2509116..2512049 1 NC_008148.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: tcx:Tcr_1349 aminomethyltransferase; aminomethyltransferase 2512049 4114760 Rxyl_2496 Rubrobacter xylanophilus DSM 9941 aminomethyltransferase YP_645232.1 2509116 D 266117 CDS YP_645233.1 108805296 4114761 2512083..2512757 1 NC_008148.1 KEGG: aci:ACIAD2549 putative sarcosine oxidase gamma subunit protein (SoxG); hypothetical protein 2512757 4114761 Rxyl_2497 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645233.1 2512083 D 266117 CDS YP_645234.1 108805297 4117087 2512789..2514129 1 NC_008148.1 PFAM: glutamine synthetase, catalytic region; KEGG: psp:PSPPH_2916 glutamine synthetase, type III; L-glutamine synthetase 2514129 4117087 Rxyl_2498 Rubrobacter xylanophilus DSM 9941 L-glutamine synthetase YP_645234.1 2512789 D 266117 CDS YP_645235.1 108805298 4117088 2514142..2515059 1 NC_008148.1 PFAM: glutamine amidotransferase, class-II; KEGG: psb:Psyr_2274 glutamine amidotransferase, class-II; glutamate synthase (NADPH) GltB1 subunit 2515059 4117088 Rxyl_2499 Rubrobacter xylanophilus DSM 9941 glutamate synthase (NADPH) GltB1 subunit YP_645235.1 2514142 D 266117 CDS YP_645236.1 108805299 4117089 2515059..2515736 1 NC_008148.1 PFAM: glutamate synthase, alpha subunit-like; KEGG: pst:PSPTO2584 hypothetical protein; glutamate synthase (NADPH) GltB3 subunit 2515736 4117089 Rxyl_2500 Rubrobacter xylanophilus DSM 9941 glutamate synthase (NADPH) GltB3 subunit YP_645236.1 2515059 D 266117 CDS YP_645237.1 108805300 4117090 2515739..2517121 1 NC_008148.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase ferredoxin-dependent glutamate synthase; KEGG: pub:SAR11_1315 glutamate synthase large subunit; glutamate synthase (NADPH) GltB2 subunit 2517121 4117090 Rxyl_2501 Rubrobacter xylanophilus DSM 9941 glutamate synthase (NADPH) GltB2 subunit YP_645237.1 2515739 D 266117 CDS YP_645238.1 108805301 4117091 2520326..2520988 1 NC_008148.1 PFAM: helix-turn-helix motif Cupin 2, conserved barrel; KEGG: aci:ACIAD2530 putative transcriptional regulator; XRE family transcriptional regulator 2520988 4117091 Rxyl_2505 Rubrobacter xylanophilus DSM 9941 XRE family transcriptional regulator YP_645238.1 2520326 D 266117 CDS YP_645239.1 108805302 4117092 complement(2521101..2521577) 1 NC_008148.1 PFAM: transposase, IS4; KEGG: nfa:nfa47770 putative transposase; IS4 family transposase 2521577 4117092 Rxyl_2506 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_645239.1 2521101 R 266117 CDS YP_645240.1 108805303 4117093 complement(2521595..2521972) 1 NC_008148.1 KEGG: sco:SCP1.214 putative transposase; transposase 2521972 4117093 Rxyl_2507 Rubrobacter xylanophilus DSM 9941 transposase YP_645240.1 2521595 R 266117 CDS YP_645241.1 108805304 4117094 complement(2522044..2522427) 1 NC_008148.1 hypothetical protein 2522427 4117094 Rxyl_2508 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645241.1 2522044 R 266117 CDS YP_645242.1 108805305 4117095 complement(2522741..2525338) 1 NC_008148.1 PFAM: Hemolysin-type calcium-binding region; KEGG: dde:Dde_1416 hypothetical protein; hemolysin-type calcium-binding region 2525338 4117095 Rxyl_2509 Rubrobacter xylanophilus DSM 9941 hemolysin-type calcium-binding region YP_645242.1 2522741 R 266117 CDS YP_645243.1 108805306 4117096 2526117..2528039 1 NC_008148.1 PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: gsu:GSU0253 sensory box histidine kinase; multi-sensor signal transduction histidine kinase 2528039 4117096 Rxyl_2510 Rubrobacter xylanophilus DSM 9941 multi-sensor signal transduction histidine kinase YP_645243.1 2526117 D 266117 CDS YP_645244.1 108805307 4117097 2528029..2528718 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: pst:PSPTO2130 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 2528718 4117097 Rxyl_2511 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_645244.1 2528029 D 266117 CDS YP_645245.1 108805308 4117098 2528732..2529217 1 NC_008148.1 hypothetical protein 2529217 4117098 Rxyl_2512 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645245.1 2528732 D 266117 CDS YP_645246.1 108805309 4117099 complement(2529299..2529685) 1 NC_008148.1 KEGG: nfa:nfa48360 putative transposase; putative transposase 2529685 4117099 Rxyl_2513 Rubrobacter xylanophilus DSM 9941 putative transposase YP_645246.1 2529299 R 266117 CDS YP_645247.1 108805310 4117100 complement(2529703..2530080) 1 NC_008148.1 KEGG: sco:SCP1.214 putative transposase; putative transposase 2530080 4117100 Rxyl_2514 Rubrobacter xylanophilus DSM 9941 putative transposase YP_645247.1 2529703 R 266117 CDS YP_645248.1 108805311 4117101 complement(2530152..2530433) 1 NC_008148.1 KEGG: sme:SMb20060 probable ISRm5 transposase protein; hypothetical protein 2530433 4117101 Rxyl_2515 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645248.1 2530152 R 266117 CDS YP_645249.1 108805312 4117102 complement(2530954..2531910) 1 NC_008148.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: gme:Gmet_1162 tetrahydrofolate dehydrogenase/cyclohydrolase; methylenetetrahydrofolate dehydrogenase (NADP+) 2531910 4117102 Rxyl_2517 Rubrobacter xylanophilus DSM 9941 methylenetetrahydrofolate dehydrogenase (NADP+) YP_645249.1 2530954 R 266117 CDS YP_645250.1 108805313 4117103 complement(2531920..2532501) 1 NC_008148.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: mca:MCA0507 methenyltetrahydrofolate cyclohydrolase; formimidoyltetrahydrofolate cyclodeaminase 2532501 4117103 Rxyl_2518 Rubrobacter xylanophilus DSM 9941 formimidoyltetrahydrofolate cyclodeaminase YP_645250.1 2531920 R 266117 CDS YP_645251.1 108805314 4117104 complement(2532498..2534219) 1 NC_008148.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2534219 4117104 Rxyl_2519 Rubrobacter xylanophilus DSM 9941 formate--tetrahydrofolate ligase YP_645251.1 2532498 R 266117 CDS YP_645252.1 108805315 4117105 complement(2534312..2534983) 1 NC_008148.1 KEGG: mlo:mll7314 hypothetical protein; hypothetical protein 2534983 4117105 Rxyl_2520 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645252.1 2534312 R 266117 CDS YP_645253.1 108805316 4115584 complement(2535203..2535631) 1 NC_008148.1 PFAM: UspA; KEGG: dvu:DVU0893 universal stress protein family; hypothetical protein 2535631 4115584 Rxyl_2521 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645253.1 2535203 R 266117 CDS YP_645254.1 108805317 4115585 complement(2535628..2537079) 1 NC_008148.1 PFAM: amino acid permease-associated region; KEGG: sme:SMc02616 putative permease transmembrane protein; amino acid permease-associated protein 2537079 4115585 Rxyl_2522 Rubrobacter xylanophilus DSM 9941 amino acid permease-associated protein YP_645254.1 2535628 R 266117 CDS YP_645255.1 108805318 4115586 complement(2537255..2537680) 1 NC_008148.1 KEGG: sme:SMc02618 hypothetical protein; hypothetical protein 2537680 4115586 Rxyl_2523 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645255.1 2537255 R 266117 CDS YP_645256.1 108805319 4115587 complement(2537683..2537973) 1 NC_008148.1 KEGG: sme:SMc02619 hypothetical protein; hypothetical protein 2537973 4115587 Rxyl_2524 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645256.1 2537683 R 266117 CDS YP_645257.1 108805320 4115588 complement(2541142..2541963) 1 NC_008148.1 PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase 2541963 4115588 Rxyl_2528 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_645257.1 2541142 R 266117 CDS YP_645258.1 108805321 4115589 2542337..2547193 1 NC_008148.1 PFAM: NAD-glutamate dehydrogenase; KEGG: eba:ebA3619 NAD-glutamate dehydrogenase; glutamate dehydrogenase 2547193 4115589 Rxyl_2529 Rubrobacter xylanophilus DSM 9941 glutamate dehydrogenase YP_645258.1 2542337 D 266117 CDS YP_645259.1 108805322 4115590 complement(2547190..2548365) 1 NC_008148.1 PFAM: Thiolase; KEGG: gka:GK3397 acetyl-CoA acetyltransferase; acetyl-CoA C-acetyltransferase 2548365 4115590 Rxyl_2530 Rubrobacter xylanophilus DSM 9941 acetyl-CoA C-acetyltransferase YP_645259.1 2547190 R 266117 CDS YP_645260.1 108805323 4115591 2548496..2550109 1 NC_008148.1 PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0572 acetyl-coenzyme A synthetase family protein; AMP-dependent synthetase and ligase 2550109 4115591 Rxyl_2531 Rubrobacter xylanophilus DSM 9941 AMP-dependent synthetase and ligase YP_645260.1 2548496 D 266117 CDS YP_645261.1 108805324 4115592 complement(2550099..2550851) 1 NC_008148.1 PFAM: periplasmic binding protein; KEGG: sco:SCO1618 hypothetical protein; periplasmic binding protein 2550851 4115592 Rxyl_2532 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein YP_645261.1 2550099 R 266117 CDS YP_645262.1 108805325 4115593 complement(2550865..2551815) 1 NC_008148.1 KEGG: tko:TK0329 lysine/arginine/ornithine transport system kinase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: ATPase; LAO/AO transport system ATPase 2551815 4115593 Rxyl_2533 Rubrobacter xylanophilus DSM 9941 LAO/AO transport system ATPase YP_645262.1 2550865 R 266117 CDS YP_645263.1 108805326 4115594 complement(2551815..2553068) 1 NC_008148.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: bha:BH2205 dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase E2 component 2553068 4115594 Rxyl_2534 Rubrobacter xylanophilus DSM 9941 2-oxoglutarate dehydrogenase E2 component YP_645263.1 2551815 R 266117 CDS YP_645264.1 108805327 4115595 complement(2553107..2555947) 1 NC_008148.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2555947 sucA 4115595 sucA Rubrobacter xylanophilus DSM 9941 2-oxoglutarate dehydrogenase E1 component YP_645264.1 2553107 R 266117 CDS YP_645265.1 108805328 4115596 complement(2556132..2556413) 1 NC_008148.1 PFAM: Tetratricopeptide TPR_2; KEGG: aae:aq_1409 hypothetical protein; hypothetical protein 2556413 4115596 Rxyl_2536 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645265.1 2556132 R 266117 CDS YP_645266.1 108805329 4115597 2556506..2557738 1 NC_008148.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sth:STH832 cystathionine gamma-lyase; cystathionine gamma-synthase 2557738 4115597 Rxyl_2537 Rubrobacter xylanophilus DSM 9941 cystathionine gamma-synthase YP_645266.1 2556506 D 266117 CDS YP_645267.1 108805330 4115598 complement(2557768..2560899) 1 NC_008148.1 PFAM: coagulation factor 5/8 type-like; KEGG: mca:MCA1217 metalloprotease, putative; coagulation factor 5/8 type-like protein 2560899 4115598 Rxyl_2538 Rubrobacter xylanophilus DSM 9941 coagulation factor 5/8 type-like protein YP_645267.1 2557768 R 266117 CDS YP_645268.1 108805331 4115599 2561148..2561501 1 NC_008148.1 PFAM: protein of unknown function DUF107; KEGG: cte:CT0795 NfeD protein; hypothetical protein 2561501 4115599 Rxyl_2539 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645268.1 2561148 D 266117 CDS YP_645269.1 108805332 4115600 complement(2561488..2563545) 1 NC_008148.1 PFAM: protein of unknown function DUF255; KEGG: chy:CHY_1723 hypothetical protein; hypothetical protein 2563545 4115600 Rxyl_2540 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645269.1 2561488 R 266117 CDS YP_645270.1 108805333 4115601 2563969..2564994 1 NC_008148.1 PFAM: fructose-bisphosphate aldolase, class-I; KEGG: bja:bll1520 fructose bisphosphate aldolase; fructose-bisphosphate aldolase 2564994 4115601 Rxyl_2541 Rubrobacter xylanophilus DSM 9941 fructose-bisphosphate aldolase YP_645270.1 2563969 D 266117 CDS YP_645271.1 108805334 4115602 complement(2565047..2565859) 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: ade:Adeh_0244 LigA; peptidase C60, sortase A and B 2565859 4115602 Rxyl_2542 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_645271.1 2565047 R 266117 CDS YP_645272.1 108805335 4115603 complement(2565868..2566422) 1 NC_008148.1 PFAM: surface protein from Gram-positive cocci, anchor region; surface protein 2566422 4115603 Rxyl_2543 Rubrobacter xylanophilus DSM 9941 surface protein YP_645272.1 2565868 R 266117 CDS YP_645273.1 108805336 4115375 2566612..2569347 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase CoA-binding; KEGG: ava:Ava_4664 GCN5-related N-acetyltransferase; CoA-binding protein 2569347 4115375 Rxyl_2544 Rubrobacter xylanophilus DSM 9941 CoA-binding protein YP_645273.1 2566612 D 266117 CDS YP_645274.1 108805337 4115376 complement(2569409..2569702) 1 NC_008148.1 hypothetical protein 2569702 4115376 Rxyl_2545 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645274.1 2569409 R 266117 CDS YP_645275.1 108805338 4115377 2569995..2570519 1 NC_008148.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: gox:GOX1978 hypothetical protein; hypothetical protein 2570519 4115377 Rxyl_2546 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645275.1 2569995 D 266117 CDS YP_645276.1 108805339 4115378 complement(2570516..2571181) 1 NC_008148.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: ttj:TTHA0240 lipoate-protein ligase B; lipoate-protein ligase B 2571181 4115378 Rxyl_2547 Rubrobacter xylanophilus DSM 9941 lipoate-protein ligase B YP_645276.1 2570516 R 266117 CDS YP_645277.1 108805340 4115379 complement(2571184..2572149) 1 NC_008148.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2572149 4115379 Rxyl_2548 Rubrobacter xylanophilus DSM 9941 lipoyl synthase YP_645277.1 2571184 R 266117 CDS YP_645278.1 108805341 4115380 complement(2572303..2573718) 1 NC_008148.1 TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region HI0933-like protein FAD dependent oxidoreductase; KEGG: gka:GK2379 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2573718 4115380 Rxyl_2549 Rubrobacter xylanophilus DSM 9941 dihydrolipoamide dehydrogenase YP_645278.1 2572303 R 266117 CDS YP_645279.1 108805342 4115381 complement(2573739..2574599) 1 NC_008148.1 KEGG: mta:Moth_1840 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase zinc finger, Fpg-type; DNA-(apurinic or apyrimidinic site) lyase/formamidopyrimidine-DNA glycosylase 2574599 4115381 Rxyl_2550 Rubrobacter xylanophilus DSM 9941 DNA-(apurinic or apyrimidinic site) lyase/formamidopyrimidine-DNA glycosylase YP_645279.1 2573739 R 266117 CDS YP_645280.1 108805343 4115382 complement(2574608..2575339) 1 NC_008148.1 PFAM: TENA/THI-4 protein; KEGG: mag:amb2534 hypothetical protein; TENA/THI-4 protein 2575339 4115382 Rxyl_2551 Rubrobacter xylanophilus DSM 9941 TENA/THI-4 protein YP_645280.1 2574608 R 266117 CDS YP_645281.1 108805344 4115383 2576034..2576282 1 NC_008148.1 TIGRFAM: molybdopterin converting factor, subunit 1 MoaD, archaeal; PFAM: thiamineS; KEGG: bbr:BB1329 molybdopterin converting factor; molybdopterin converting factor subunit 1 2576282 4115383 Rxyl_2552 Rubrobacter xylanophilus DSM 9941 molybdopterin converting factor subunit 1 YP_645281.1 2576034 D 266117 CDS YP_645282.1 108805345 4115384 2576287..2576727 1 NC_008148.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: sth:STH3180 molybdopterin converting factor-like protein; molybdopterin synthase subunit MoaE 2576727 4115384 Rxyl_2553 Rubrobacter xylanophilus DSM 9941 molybdopterin synthase subunit MoaE YP_645282.1 2576287 D 266117 CDS YP_645283.1 108805346 4115385 2576777..2577259 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_0490 NUDIX/MutT family protein; NUDIX hydrolase 2577259 4115385 Rxyl_2554 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_645283.1 2576777 D 266117 CDS YP_645284.1 108805347 4115386 2577252..2577983 1 NC_008148.1 PFAM: Abortive infection protein; KEGG: mta:Moth_1913 abortive infection protein; abortive infection protein 2577983 4115386 Rxyl_2555 Rubrobacter xylanophilus DSM 9941 abortive infection protein YP_645284.1 2577252 D 266117 CDS YP_645285.1 108805348 4115387 complement(2577943..2579223) 1 NC_008148.1 PFAM: regulatory protein, MerR Citrate synthase; KEGG: bps:BPSL0890 putative citrate synthase; citrate synthase 2579223 4115387 Rxyl_2556 Rubrobacter xylanophilus DSM 9941 citrate synthase YP_645285.1 2577943 R 266117 CDS YP_645286.1 108805349 4115388 2579308..2580483 1 NC_008148.1 PFAM: Citrate synthase; KEGG: ccr:CC3642 citrate synthase; citrate synthase 2580483 4115388 Rxyl_2557 Rubrobacter xylanophilus DSM 9941 citrate synthase YP_645286.1 2579308 D 266117 CDS YP_645287.1 108805350 4115389 complement(2580764..2582026) 1 NC_008148.1 TIGRFAM: Competence-damaged protein; PFAM: molybdopterin binding domain CinA-like; KEGG: tte:TTE1375 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; competence/damage-inducible protein cinA 2582026 4115389 Rxyl_2558 Rubrobacter xylanophilus DSM 9941 competence/damage-inducible protein cinA YP_645287.1 2580764 R 266117 CDS YP_645288.1 108805351 4115390 2582050..2582652 1 NC_008148.1 KEGG: mta:Moth_0566 metal dependent phosphohydrolase; TIGRFAM: conserved hypothetical protein uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2582652 4115390 Rxyl_2559 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_645288.1 2582050 D 266117 CDS YP_645289.1 108805352 4115391 complement(2582611..2583174) 1 NC_008148.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 predicted membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 2583174 4115391 Rxyl_2560 Rubrobacter xylanophilus DSM 9941 membrane-bound metal-dependent hydrolase YP_645289.1 2582611 R 266117 CDS YP_645290.1 108805353 4115392 2583222..2585120 1 NC_008148.1 KEGG: tfu:Tfu_0334 hypothetical protein; hypothetical protein 2585120 4115392 Rxyl_2561 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645290.1 2583222 D 266117 CDS YP_645291.1 108805354 4115393 complement(2585038..2585397) 1 NC_008148.1 PFAM: protein of unknown function DUF488; KEGG: gsu:GSU3442 hypothetical protein; hypothetical protein 2585397 4115393 Rxyl_2562 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645291.1 2585038 R 266117 CDS YP_645292.1 108805355 4115278 complement(2585408..2586250) 1 NC_008148.1 PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: cgb:cg2797 hypothetical protein; phosphosulfolactate synthase 2586250 4115278 Rxyl_2563 Rubrobacter xylanophilus DSM 9941 phosphosulfolactate synthase YP_645292.1 2585408 R 266117 CDS YP_645293.1 108805356 4115279 complement(2586265..2587638) 1 NC_008148.1 PFAM: MmgE/PrpD; KEGG: cgb:cg2796 MmgE/PrpD family protein; 2-methylcitrate dehydratase 2587638 4115279 Rxyl_2564 Rubrobacter xylanophilus DSM 9941 2-methylcitrate dehydratase YP_645293.1 2586265 R 266117 CDS YP_645294.1 108805357 4115280 complement(2587757..2588146) 1 NC_008148.1 TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; KEGG: ade:Adeh_3128 alkylhydroperoxidase AhpD core; alkylhydroperoxidase AhpD core 2588146 4115280 Rxyl_2565 Rubrobacter xylanophilus DSM 9941 alkylhydroperoxidase AhpD core YP_645294.1 2587757 R 266117 CDS YP_645295.1 108805358 4115281 complement(2588166..2588777) 1 NC_008148.1 KEGG: sto:ST0827 hypothetical protein; polyketide biosynthesis dithiol-disulfide isomerase-like protein 2588777 4115281 Rxyl_2566 Rubrobacter xylanophilus DSM 9941 polyketide biosynthesis dithiol-disulfide isomerase-like protein YP_645295.1 2588166 R 266117 CDS YP_645296.1 108805359 4115282 complement(2588905..2590251) 1 NC_008148.1 KEGG: tvo:TVN0083 cytochrome bd-I oxidase subunit I; cytochrome bd-type quinol oxidase subunit 1-like protein 2590251 4115282 Rxyl_2567 Rubrobacter xylanophilus DSM 9941 cytochrome bd-type quinol oxidase subunit 1-like protein YP_645296.1 2588905 R 266117 CDS YP_645297.1 108805360 4115283 complement(2590650..2590925) 1 NC_008148.1 hypothetical protein 2590925 4115283 Rxyl_2568 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645297.1 2590650 R 266117 CDS YP_645298.1 108805361 4115284 2590976..2592058 1 NC_008148.1 KEGG: mth:MTH1761 hypothetical protein; hypothetical protein 2592058 4115284 Rxyl_2569 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645298.1 2590976 D 266117 CDS YP_645299.1 108805362 4115285 complement(2592055..2592513) 1 NC_008148.1 PFAM: protein of unknown function DUF192; KEGG: lic:LIC12494 hypothetical protein; hypothetical protein 2592513 4115285 Rxyl_2570 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645299.1 2592055 R 266117 CDS YP_645300.1 108805363 4115286 complement(2592510..2593220) 1 NC_008148.1 PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: tac:Ta0124m alanyl-tRNA synthetase related protein; Ala-tRNA(Pro) hydrolase 2593220 4115286 Rxyl_2571 Rubrobacter xylanophilus DSM 9941 Ala-tRNA(Pro) hydrolase YP_645300.1 2592510 R 266117 CDS YP_645301.1 108805364 4115287 complement(2593217..2594029) 1 NC_008148.1 TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP-like; KEGG: mta:Moth_0817 histidinol phosphate phosphatase, HisJ; histidinol phosphate phosphatase HisJ 2594029 4115287 Rxyl_2572 Rubrobacter xylanophilus DSM 9941 histidinol phosphate phosphatase HisJ YP_645301.1 2593217 R 266117 CDS YP_645302.1 108805365 4115288 2594120..2595115 1 NC_008148.1 TIGRFAM: calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; KEGG: mca:MCA0142 calcium/proton exchanger; calcium/proton exchanger 2595115 4115288 Rxyl_2573 Rubrobacter xylanophilus DSM 9941 calcium/proton exchanger YP_645302.1 2594120 D 266117 CDS YP_645303.1 108805366 4115289 complement(2595112..2595957) 1 NC_008148.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bur:Bcep18194_B0266 hypothetical protein; type 12 methyltransferase 2595957 4115289 Rxyl_2574 Rubrobacter xylanophilus DSM 9941 type 12 methyltransferase YP_645303.1 2595112 R 266117 CDS YP_645304.1 108805367 4115290 complement(2595960..2596979) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: sru:SRU_2666 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 2596979 4115290 Rxyl_2575 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_645304.1 2595960 R 266117 CDS YP_645305.1 108805368 4115291 complement(2596990..2597367) 1 NC_008148.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: csa:Csal_1177 hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase 2597367 4115291 Rxyl_2576 Rubrobacter xylanophilus DSM 9941 putative 6-pyruvoyl tetrahydropterin synthase YP_645305.1 2596990 R 266117 CDS YP_645306.1 108805369 4115292 complement(2597373..2598401) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nph:NP1340A oxidoreductase (probable Zn-dependent dehydrogenase , threonine 3-dehydrogenase); zinc-binding alcohol dehydrogenase 2598401 4115292 Rxyl_2577 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_645306.1 2597373 R 266117 CDS YP_645307.1 108805370 4115293 complement(2598385..2599077) 1 NC_008148.1 KEGG: pca:Pcar_1445 riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin-specific deaminase-like; PFAM: bifunctional deaminase-reductase-like; 2, 5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase 2599077 4115293 Rxyl_2578 Rubrobacter xylanophilus DSM 9941 2, 5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase YP_645307.1 2598385 R 266117 CDS YP_645308.1 108805371 4115294 2599162..2599542 1 NC_008148.1 TIGRFAM: dihydroneopterin aldolase; KEGG: sth:STH3187 dihydroneopterin aldolase; dihydroneopterin aldolase 2599542 4115294 Rxyl_2579 Rubrobacter xylanophilus DSM 9941 dihydroneopterin aldolase YP_645308.1 2599162 D 266117 CDS YP_645309.1 108805372 4115295 2599582..2600490 1 NC_008148.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: dvu:DVU0038 acyltransferase domain protein; phospholipid/glycerol acyltransferase 2600490 4115295 Rxyl_2580 Rubrobacter xylanophilus DSM 9941 phospholipid/glycerol acyltransferase YP_645309.1 2599582 D 266117 CDS YP_645310.1 108805373 4115296 complement(2600487..2601485) 1 NC_008148.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: spb:M28_Spy0156 glycine betaine transport system permease protein; glycine betaine ABC transporter substrate-binding protein 2601485 4115296 Rxyl_2581 Rubrobacter xylanophilus DSM 9941 glycine betaine ABC transporter substrate-binding protein YP_645310.1 2600487 R 266117 CDS YP_645311.1 108805374 4115297 complement(2601487..2602380) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sco:SCO1620 glycine betaine transport system permease protein; twin-arginine translocation pathway signal protein 2602380 4115297 Rxyl_2582 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_645311.1 2601487 R 266117 CDS YP_645312.1 108805375 4115044 complement(2602410..2603315) 1 NC_008148.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sco:SCO1620 glycine betaine transport system permease protein; glycine betaine ABC transporter substrate-binding protein 2603315 4115044 Rxyl_2583 Rubrobacter xylanophilus DSM 9941 glycine betaine ABC transporter substrate-binding protein YP_645312.1 2602410 R 266117 CDS YP_645313.1 108805376 4115045 complement(2603340..2604221) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi02627 glycine betaine ABC transporter (permease); RBL01842; binding-protein-dependent transport system inner membrane protein 2604221 4115045 Rxyl_2584 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_645313.1 2603340 R 266117 CDS YP_645314.1 108805377 4115046 complement(2604225..2605496) 1 NC_008148.1 KEGG: lin:lin1013 highly similar to glycine betaine ABC transporter (ATP-binding protein); TIGRFAM: glycine betaine/L-proline transport ATP binding subunit; PFAM: CBS ABC transporter related; SMART: ATPase; glycine betaine/L-proline transport ATP binding subunit 2605496 4115046 Rxyl_2585 Rubrobacter xylanophilus DSM 9941 glycine betaine/L-proline transport ATP binding subunit YP_645314.1 2604225 R 266117 CDS YP_645315.1 108805378 4115047 2606077..2608293 1 NC_008148.1 PFAM: glycoside hydrolase, family 31; KEGG: lil:LA2944 Alpha-glucosidase II; alpha-glucosidase 2608293 4115047 Rxyl_2586 Rubrobacter xylanophilus DSM 9941 alpha-glucosidase YP_645315.1 2606077 D 266117 CDS YP_645316.1 108805379 4115048 complement(2608290..2609648) 1 NC_008148.1 KEGG: lmf:LMOf2365_1052 hypothetical protein; L-fucose isomerase 2609648 4115048 Rxyl_2587 Rubrobacter xylanophilus DSM 9941 L-fucose isomerase YP_645316.1 2608290 R 266117 CDS YP_645317.1 108805380 4115049 complement(2609645..2610781) 1 NC_008148.1 PFAM: phosphofructokinase; KEGG: mta:Moth_1234 phosphofructokinase; 6-phosphofructokinase 2610781 4115049 Rxyl_2588 Rubrobacter xylanophilus DSM 9941 6-phosphofructokinase YP_645317.1 2609645 R 266117 CDS YP_645318.1 108805381 4115050 complement(2610900..2611601) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1310 regulatory protein GntR, HTH; GntR family transcriptional regulator 2611601 4115050 Rxyl_2589 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_645318.1 2610900 R 266117 CDS YP_645319.1 108805382 4115051 complement(2611616..2612770) 1 NC_008148.1 PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: pub:SAR11_0842 probable galactarate dehydratase; D-galactarate dehydratase/Altronate hydrolase-like protein 2612770 4115051 Rxyl_2590 Rubrobacter xylanophilus DSM 9941 D-galactarate dehydratase/Altronate hydrolase-like protein YP_645319.1 2611616 R 266117 CDS YP_645320.1 108805383 4115052 complement(2612773..2613096) 1 NC_008148.1 KEGG: sto:ST2559 altronate hydrolase; altronate hydrolase 2613096 4115052 Rxyl_2591 Rubrobacter xylanophilus DSM 9941 altronate hydrolase YP_645320.1 2612773 R 266117 CDS YP_645321.1 108805384 4115053 complement(2613138..2613725) 1 NC_008148.1 KEGG: tfu:Tfu_1509 hypothetical protein; hypothetical protein 2613725 4115053 Rxyl_2592 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645321.1 2613138 R 266117 CDS YP_645322.1 108805385 4115054 2613753..2614838 1 NC_008148.1 PFAM: protein of unknown function DUF34; KEGG: sth:STH598 hypothetical protein; hypothetical protein 2614838 4115054 Rxyl_2593 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645322.1 2613753 D 266117 CDS YP_645323.1 108805386 4115055 complement(2614819..2615778) 1 NC_008148.1 PFAM: PfkB; KEGG: osa:B1078G07.32 contains ESTs AU029506(E31019),AU029505(E31019); PfkB protein 2615778 4115055 Rxyl_2594 Rubrobacter xylanophilus DSM 9941 PfkB protein YP_645323.1 2614819 R 266117 CDS YP_645324.1 108805387 4115056 complement(2615775..2616842) 1 NC_008148.1 KEGG: cac:CAC2918 mannose-6 phospate isomelase; phosphomannose isomerase-like protein 2616842 4115056 Rxyl_2595 Rubrobacter xylanophilus DSM 9941 phosphomannose isomerase-like protein YP_645324.1 2615775 R 266117 CDS YP_645325.1 108805388 4115057 2617086..2619569 1 NC_008148.1 TIGRFAM: alpha-1,2-mannosidase, putative; PFAM: glycosyl hydrolase 92; KEGG: sma:SAV7255 putative secreted protein; alpha-1,2-mannosidase 2619569 4115057 Rxyl_2596 Rubrobacter xylanophilus DSM 9941 alpha-1,2-mannosidase YP_645325.1 2617086 D 266117 CDS YP_645326.1 108805389 4115058 2619548..2620342 1 NC_008148.1 KEGG: sma:SAV2253 hypothetical protein; hypothetical protein 2620342 4115058 Rxyl_2597 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645326.1 2619548 D 266117 CDS YP_645327.1 108805390 4115059 2620335..2621483 1 NC_008148.1 PFAM: PfkB; KEGG: gvi:gll0501 probable sugar kinase; PfkB protein 2621483 4115059 Rxyl_2598 Rubrobacter xylanophilus DSM 9941 PfkB protein YP_645327.1 2620335 D 266117 CDS YP_645328.1 108805391 4115060 2621572..2625540 1 NC_008148.1 TIGRFAM: alpha-1,2-mannosidase, putative; PFAM: coagulation factor 5/8 type-like Sad1/UNC-like-like glycosyl hydrolase 92; KEGG: sma:SAV2252 putative ATP/GTP-binding protein; alpha-1,2-mannosidase 2625540 4115060 Rxyl_2599 Rubrobacter xylanophilus DSM 9941 alpha-1,2-mannosidase YP_645328.1 2621572 D 266117 CDS YP_645329.1 108805392 4115061 2625590..2626639 1 NC_008148.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix type 3; KEGG: sma:SAV1477 putative LacI-family transcriptional regulator; LacI family transcriptional regulator 2626639 4115061 Rxyl_2600 Rubrobacter xylanophilus DSM 9941 LacI family transcriptional regulator YP_645329.1 2625590 D 266117 CDS YP_645330.1 108805393 4115062 2626727..2627503 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV5702 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2627503 4115062 Rxyl_2601 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645330.1 2626727 D 266117 CDS YP_645331.1 108805394 4114683 2627503..2628528 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: mlo:mll3405 ribose ABC transporter, permease protein; inner-membrane translocator 2628528 4114683 Rxyl_2602 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_645331.1 2627503 D 266117 CDS YP_645332.1 108805395 4114684 2628556..2629572 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll3407 ribose ABC transporter, periplasmic binding protein; twin-arginine translocation pathway signal protein 2629572 4114684 Rxyl_2603 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_645332.1 2628556 D 266117 CDS YP_645333.1 108805396 4114685 2629656..2631209 1 NC_008148.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN-like; KEGG: fra:Francci3_4533 integral membrane protein MviN; integral membrane protein MviN 2631209 4114685 Rxyl_2604 Rubrobacter xylanophilus DSM 9941 integral membrane protein MviN YP_645333.1 2629656 D 266117 CDS YP_645334.1 108805397 4114686 complement(2631206..2631601) 1 NC_008148.1 hypothetical protein 2631601 4114686 Rxyl_2605 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645334.1 2631206 R 266117 CDS YP_645335.1 108805398 4114687 complement(2631621..2631833) 1 NC_008148.1 hypothetical protein 2631833 4114687 Rxyl_2606 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645335.1 2631621 R 266117 CDS YP_645336.1 108805399 4114688 complement(2631894..2632781) 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: nfa:nfa26440 putative membrane protein; hypothetical protein 2632781 4114688 Rxyl_2607 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645336.1 2631894 R 266117 CDS YP_645337.1 108805400 4114689 2632922..2633185 1 NC_008148.1 PFAM: Transglycosylase-associated protein; KEGG: vpa:VP2170 putative transglycosylase associated gene; transglycosylase-associated protein 2633185 4114689 Rxyl_2608 Rubrobacter xylanophilus DSM 9941 transglycosylase-associated protein YP_645337.1 2632922 D 266117 CDS YP_645338.1 108805401 4114690 complement(2633182..2633976) 1 NC_008148.1 TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase-like biotin/lipoate A/B protein ligase; KEGG: sth:STH1400 transcriptional repressor, BirA-like; biotin--acetyl-CoA-carboxylase ligase 2633976 4114690 Rxyl_2609 Rubrobacter xylanophilus DSM 9941 biotin--acetyl-CoA-carboxylase ligase YP_645338.1 2633182 R 266117 CDS YP_645339.1 108805402 4114691 2634045..2634713 1 NC_008148.1 KEGG: lin:lin1535 hypothetical protein; hypothetical protein 2634713 4114691 Rxyl_2610 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645339.1 2634045 D 266117 CDS YP_645340.1 108805403 4114692 complement(2634710..2635168) 1 NC_008148.1 PFAM: UspA; KEGG: tbd:Tbd_2614 universal stress protein; hypothetical protein 2635168 4114692 Rxyl_2611 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645340.1 2634710 R 266117 CDS YP_645341.1 108805404 4114693 2635266..2636441 1 NC_008148.1 PFAM: GAF ATP-binding region, ATPase-like histidine kinase, dimerisation and phosphoacceptor region; KEGG: sth:STH650 two-component system sensor kinase; GAF sensor signal transduction histidine kinase 2636441 4114693 Rxyl_2612 Rubrobacter xylanophilus DSM 9941 GAF sensor signal transduction histidine kinase YP_645341.1 2635266 D 266117 CDS YP_645342.1 108805405 4114694 2636441..2637064 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH; KEGG: sth:STH3162 two-component response regulator; two component LuxR family transcriptional regulator 2637064 4114694 Rxyl_2613 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_645342.1 2636441 D 266117 CDS YP_645343.1 108805406 4114695 2637307..2637699 1 NC_008148.1 KEGG: bcz:BCZK2204 group-specific protein; hypothetical protein 2637699 4114695 Rxyl_2614 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645343.1 2637307 D 266117 CDS YP_645344.1 108805407 4114696 2637713..2638033 1 NC_008148.1 KEGG: sao:SAOUHSC_02936 hypothetical protein; hypothetical protein 2638033 4114696 Rxyl_2615 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645344.1 2637713 D 266117 CDS YP_645345.1 108805408 4114697 2638065..2639216 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO1803 oxidoreductase; short-chain dehydrogenase/reductase SDR 2639216 4114697 Rxyl_2616 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645345.1 2638065 D 266117 CDS YP_645346.1 108805409 4114698 2639213..2640310 1 NC_008148.1 KEGG: sma:SAV6474 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase; putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2640310 4114698 Rxyl_2617 Rubrobacter xylanophilus DSM 9941 putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_645346.1 2639213 D 266117 CDS YP_645347.1 108805410 4114699 complement(2640314..2640784) 1 NC_008148.1 PFAM: protein of unknown function UPF0074; KEGG: gsu:GSU1639 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 2640784 4114699 Rxyl_2618 Rubrobacter xylanophilus DSM 9941 BadM/Rrf2 family transcriptional regulator YP_645347.1 2640314 R 266117 CDS YP_645348.1 108805411 4114700 2640844..2641206 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: sco:SCO7426 hypothetical protein; cupin 2 barrel domain-containing protein 2641206 4114700 Rxyl_2619 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_645348.1 2640844 D 266117 CDS YP_645349.1 108805412 4114701 complement(2641203..2642360) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: tfu:Tfu_2101 phosphatidyl-myo-inositol alpha-mannosyltransferase; phosphatidylinositol alpha-mannosyltransferase 2642360 4114701 Rxyl_2620 Rubrobacter xylanophilus DSM 9941 phosphatidylinositol alpha-mannosyltransferase YP_645349.1 2641203 R 266117 CDS YP_645350.1 108805413 4114702 complement(2642357..2642815) 1 NC_008148.1 PFAM: protein of unknown function DUF82; KEGG: tko:TK0292 hypothetical protein; hypothetical protein 2642815 4114702 Rxyl_2621 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645350.1 2642357 R 266117 CDS YP_645351.1 108805414 4115317 complement(2642820..2643275) 1 NC_008148.1 KEGG: tfu:Tfu_1935 deoxyUTP pyrophosphatase subfamily 1; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut); PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase 2643275 4115317 Rxyl_2622 Rubrobacter xylanophilus DSM 9941 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_645351.1 2642820 R 266117 CDS YP_645352.1 108805415 4115318 complement(2643310..2643960) 1 NC_008148.1 hypothetical protein 2643960 4115318 Rxyl_2623 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645352.1 2643310 R 266117 CDS YP_645353.1 108805416 4115319 complement(2643957..2645633) 1 NC_008148.1 KEGG: rso:RS00391 hypothetical protein; hypothetical protein 2645633 4115319 Rxyl_2624 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645353.1 2643957 R 266117 CDS YP_645354.1 108805417 4115320 complement(2645609..2646538) 1 NC_008148.1 KEGG: rno:499168 similar to protein tyrosine phosphatase, receptor type, F (predicted); hypothetical protein 2646538 4115320 Rxyl_2625 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645354.1 2645609 R 266117 CDS YP_645355.1 108805418 4115321 complement(2646535..2647758) 1 NC_008148.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mta:Moth_2387 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2647758 4115321 Rxyl_2626 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylglucosamine 2-epimerase YP_645355.1 2646535 R 266117 CDS YP_645356.1 108805419 4115322 complement(2647762..2649039) 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: lxx:Lxx14000 N-acetyl-glucosamine transferase; glycosyl transferase family protein 2649039 4115322 Rxyl_2627 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_645356.1 2647762 R 266117 CDS YP_645357.1 108805420 4115323 complement(2649177..2649908) 1 NC_008148.1 hypothetical protein 2649908 4115323 Rxyl_2628 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645357.1 2649177 R 266117 CDS YP_645358.1 108805421 4115324 complement(2649943..2650641) 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver Bacterio-opsin activator, HTH; KEGG: pfl:PFL_3823 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 2650641 4115324 Rxyl_2629 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_645358.1 2649943 R 266117 CDS YP_645359.1 108805422 4115325 2650716..2652449 1 NC_008148.1 TIGRFAM: methionyl-tRNA synthetase; KEGG: pho:PH0993 methionyl-tRNA synthetase; methionyl-tRNA synthetase 2652449 4115325 Rxyl_2630 Rubrobacter xylanophilus DSM 9941 methionyl-tRNA synthetase YP_645359.1 2650716 D 266117 CDS YP_645360.1 108805423 4115326 complement(2652453..2653511) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: rru:Rru_A1180 major facilitator superfamily MFS_1; twin-arginine translocation pathway signal protein 2653511 4115326 Rxyl_2631 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_645360.1 2652453 R 266117 CDS YP_645361.1 108805424 4115327 complement(2653600..2653959) 1 NC_008148.1 PFAM: Rhodanese-like; KEGG: gvi:gll0038 hypothetical protein; rhodanese-like protein 2653959 4115327 Rxyl_2632 Rubrobacter xylanophilus DSM 9941 rhodanese-like protein YP_645361.1 2653600 R 266117 CDS YP_645362.1 108805425 4115328 complement(2654043..2654831) 1 NC_008148.1 PFAM: thymidylate synthase complementing protein ThyX; KEGG: mle:ML1514 putative mycobacteriophage protein; thymidylate synthase (FAD) 2654831 4115328 Rxyl_2633 Rubrobacter xylanophilus DSM 9941 thymidylate synthase (FAD) YP_645362.1 2654043 R 266117 CDS YP_645363.1 108805426 4115329 complement(2655034..2655882) 1 NC_008148.1 PFAM: sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 sigma-70 region 1.2; KEGG: mta:Moth_0624 sigma 38 (RpoS); RNA polymerase sigma-28 subunit 2655882 4115329 Rxyl_2634 Rubrobacter xylanophilus DSM 9941 RNA polymerase sigma-28 subunit YP_645363.1 2655034 R 266117 CDS YP_645364.1 108805427 4115330 complement(2655911..2656198) 1 NC_008148.1 hypothetical protein 2656198 4115330 Rxyl_2635 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645364.1 2655911 R 266117 CDS YP_645365.1 108805428 4115331 complement(2656359..2656568) 1 NC_008148.1 hypothetical protein 2656568 4115331 Rxyl_2636 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645365.1 2656359 R 266117 CDS YP_645366.1 108805429 4115332 complement(2656568..2657155) 1 NC_008148.1 hypothetical protein 2657155 4115332 Rxyl_2637 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645366.1 2656568 R 266117 CDS YP_645367.1 108805430 4115333 complement(2657236..2657823) 1 NC_008148.1 hypothetical protein 2657823 4115333 Rxyl_2638 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645367.1 2657236 R 266117 CDS YP_645368.1 108805431 4115334 complement(2657889..2658800) 1 NC_008148.1 hypothetical protein 2658800 4115334 Rxyl_2639 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645368.1 2657889 R 266117 CDS YP_645369.1 108805432 4115335 complement(2658841..2659395) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tth:TTC1210 hypothetical protein; N-acetyltransferase GCN5 2659395 4115335 Rxyl_2640 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_645369.1 2658841 R 266117 CDS YP_645370.1 108805433 4115102 2659485..2660810 1 NC_008148.1 KEGG: cte:CT1906 hypothetical protein; metal dependent phosphohydrolase 2660810 4115102 Rxyl_2641 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_645370.1 2659485 D 266117 CDS YP_645371.1 108805434 4115103 complement(2661153..2661593) 1 NC_008148.1 KEGG: nfa:nfa32370 hypothetical protein; hypothetical protein 2661593 4115103 Rxyl_2642 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645371.1 2661153 R 266117 CDS YP_645372.1 108805435 4115104 complement(2661639..2662106) 1 NC_008148.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: sma:SAV7460 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 2662106 4115104 Rxyl_2643 Rubrobacter xylanophilus DSM 9941 pyridoxamine 5'-phosphate oxidase-like protein YP_645372.1 2661639 R 266117 CDS YP_645373.1 108805436 4115105 complement(2662103..2662513) 1 NC_008148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4436 lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2662513 4115105 Rxyl_2644 Rubrobacter xylanophilus DSM 9941 glyoxalase/bleomycin resistance protein/dioxygenase YP_645373.1 2662103 R 266117 CDS YP_645374.1 108805437 4115106 complement(2662544..2663014) 1 NC_008148.1 PFAM: helix-turn-helix, AraC type; KEGG: nfa:nfa43930 putative transcriptional regulator; AraC family transcriptional regulator 2663014 4115106 Rxyl_2645 Rubrobacter xylanophilus DSM 9941 AraC family transcriptional regulator YP_645374.1 2662544 R 266117 CDS YP_645375.1 108805438 4115107 complement(2663084..2663896) 1 NC_008148.1 PFAM: putative cyclase; KEGG: bld:BLi00591 hypothetical protein; putative cyclase 2663896 4115107 Rxyl_2646 Rubrobacter xylanophilus DSM 9941 putative cyclase YP_645375.1 2663084 R 266117 CDS YP_645376.1 108805439 4115108 2663996..2664643 1 NC_008148.1 PFAM: protein of unknown function UPF0126; KEGG: nmu:Nmul_A0854 protein of unknown function UPF0126; hypothetical protein 2664643 4115108 Rxyl_2647 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645376.1 2663996 D 266117 CDS YP_645377.1 108805440 4115109 2665029..2665985 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: rpb:RPB_2019 ABC transporter related; ABC transporter-like protein 2665985 4115109 Rxyl_2648 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645377.1 2665029 D 266117 CDS YP_645378.1 108805441 4115110 2665982..2666743 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: eba:ebA6231 ABC transporter permease protein; ABC transporter 2666743 4115110 Rxyl_2649 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_645378.1 2665982 D 266117 CDS YP_645379.1 108805442 4115111 2666882..2667742 1 NC_008148.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mta:Moth_1824 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2667742 4115111 Rxyl_2650 Rubrobacter xylanophilus DSM 9941 molybdenum ABC transporter periplasmic molybdate-binding protein YP_645379.1 2666882 D 266117 CDS YP_645380.1 108805443 4115112 2667739..2668578 1 NC_008148.1 TIGRFAM: NifC-like ABC-type porter Molybdate ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mta:Moth_1823 NifC-like ABC-type porter; NifC-like ABC-type porter 2668578 4115112 Rxyl_2651 Rubrobacter xylanophilus DSM 9941 NifC-like ABC-type porter YP_645380.1 2667739 D 266117 CDS YP_645381.1 108805444 4115113 2668646..2668870 1 NC_008148.1 KEGG: noc:Noc_1432 hypothetical protein; hypothetical protein 2668870 4115113 Rxyl_2652 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645381.1 2668646 D 266117 CDS YP_645382.1 108805445 4115114 complement(2668875..2669399) 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: rpb:RPB_1284 hypothetical protein; cupin 2 barrel domain-containing protein 2669399 4115114 Rxyl_2653 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_645382.1 2668875 R 266117 CDS YP_645383.1 108805446 4115115 2669471..2669710 1 NC_008148.1 hypothetical protein 2669710 4115115 Rxyl_2654 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645383.1 2669471 D 266117 CDS YP_645384.1 108805447 4115116 complement(2669790..2670074) 1 NC_008148.1 hypothetical protein 2670074 4115116 Rxyl_2655 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645384.1 2669790 R 266117 CDS YP_645385.1 108805448 4115117 2670388..2670780 1 NC_008148.1 PFAM: protein of unknown function DUF59; KEGG: mba:Mbar_A2963 hypothetical protein; hypothetical protein 2670780 4115117 Rxyl_2656 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645385.1 2670388 D 266117 CDS YP_645386.1 108805449 4115118 2670777..2671778 1 NC_008148.1 PFAM: amidohydrolase 2; KEGG: bja:blr3681 hypothetical protein; amidohydrolase 2 2671778 4115118 Rxyl_2657 Rubrobacter xylanophilus DSM 9941 amidohydrolase 2 YP_645386.1 2670777 D 266117 CDS YP_645387.1 108805450 4115119 complement(2671839..2673089) 1 NC_008148.1 PFAM: Acetamidase/Formamidase; KEGG: sma:SAV1944 putative acetamidase; formamidase 2673089 4115119 Rxyl_2658 Rubrobacter xylanophilus DSM 9941 formamidase YP_645387.1 2671839 R 266117 CDS YP_645388.1 108805451 4115120 2673176..2673463 1 NC_008148.1 TIGRFAM: Putative regulatory protein, FmdB; KEGG: bbr:BB1403 hypothetical protein; FmdB transcriptional regulator 2673463 4115120 Rxyl_2659 Rubrobacter xylanophilus DSM 9941 FmdB transcriptional regulator YP_645388.1 2673176 D 266117 CDS YP_645389.1 108805452 4115121 2673472..2674122 1 NC_008148.1 KEGG: sco:SCO6809 integral membrane transport protein; integral membrane transport protein 2674122 4115121 Rxyl_2660 Rubrobacter xylanophilus DSM 9941 integral membrane transport protein YP_645389.1 2673472 D 266117 CDS YP_645390.1 108805453 4115142 2674155..2674655 1 NC_008148.1 KEGG: gme:Gmet_2251 major facilitator superfamily MFS_1; hypothetical protein 2674655 4115142 Rxyl_2661 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645390.1 2674155 D 266117 CDS YP_645391.1 108805454 4115143 complement(2674652..2675833) 1 NC_008148.1 PFAM: Acetamidase/Formamidase; KEGG: ape:APE0528 acetamidase; formamidase 2675833 4115143 Rxyl_2662 Rubrobacter xylanophilus DSM 9941 formamidase YP_645391.1 2674652 R 266117 CDS YP_645392.1 108805455 4115144 2675914..2680023 1 NC_008148.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2680023 4115144 Rxyl_2663 Rubrobacter xylanophilus DSM 9941 multi-sensor hybrid histidine kinase YP_645392.1 2675914 D 266117 CDS YP_645393.1 108805456 4115145 complement(2680016..2680435) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like; KEGG: mag:amb0334 serine phosphatase RsbU; putative anti-sigma regulatory factor 2680435 4115145 Rxyl_2664 Rubrobacter xylanophilus DSM 9941 putative anti-sigma regulatory factor YP_645393.1 2680016 R 266117 CDS YP_645394.1 108805457 4115146 2680562..2680978 1 NC_008148.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ava:Ava_4580 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist 2680978 4115146 Rxyl_2665 Rubrobacter xylanophilus DSM 9941 anti-sigma-factor antagonist YP_645394.1 2680562 D 266117 CDS YP_645395.1 108805458 4115147 2680998..2682461 1 NC_008148.1 PFAM: GGDEF GAF; KEGG: tte:TTE2335 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); diguanylate cyclase 2682461 4115147 Rxyl_2666 Rubrobacter xylanophilus DSM 9941 diguanylate cyclase YP_645395.1 2680998 D 266117 CDS YP_645396.1 108805459 4115148 2682458..2683456 1 NC_008148.1 KEGG: pfl:PFL_2976 hypothetical protein; hypothetical protein 2683456 4115148 Rxyl_2667 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645396.1 2682458 D 266117 CDS YP_645397.1 108805460 4115149 2683446..2684954 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: pfl:PFL_2977 lipopolysaccharide biosynthesis protein-related protein; group 1 glycosyl transferase 2684954 4115149 Rxyl_2668 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_645397.1 2683446 D 266117 CDS YP_645398.1 108805461 4115150 2684958..2686331 1 NC_008148.1 KEGG: rso:RSc2270 probable transmembrane protein; putative transmembrane protein 2686331 4115150 Rxyl_2669 Rubrobacter xylanophilus DSM 9941 putative transmembrane protein YP_645398.1 2684958 D 266117 CDS YP_645399.1 108805462 4115151 2686335..2688269 1 NC_008148.1 KEGG: dra:DR0708 hypothetical protein; hypothetical protein 2688269 4115151 Rxyl_2670 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645399.1 2686335 D 266117 CDS YP_645400.1 108805463 4115152 2688314..2688673 1 NC_008148.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1364 anti-anti-sigma regulatory factor, SpoIIAA; anti-sigma-factor antagonist 2688673 4115152 Rxyl_2671 Rubrobacter xylanophilus DSM 9941 anti-sigma-factor antagonist YP_645400.1 2688314 D 266117 CDS YP_645401.1 108805464 4115153 complement(2688651..2690138) 1 NC_008148.1 KEGG: rso:RS01997 hypothetical signal peptide protein; hypothetical protein 2690138 4115153 Rxyl_2672 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645401.1 2688651 R 266117 CDS YP_645402.1 108805465 4115154 complement(2690175..2691344) 1 NC_008148.1 PFAM: response regulator receiver Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: mag:amb1116 serine phosphatase RsbU regulator sigma subunit; response regulator receiver modulated serine phosphatase 2691344 4115154 Rxyl_2673 Rubrobacter xylanophilus DSM 9941 response regulator receiver modulated serine phosphatase YP_645402.1 2690175 R 266117 CDS YP_645403.1 108805466 4115155 2691458..2692639 1 NC_008148.1 PFAM: aminotransferase, class I and II; KEGG: mta:Moth_1955 aminotransferase, class I and II; aminotransferase 2692639 4115155 Rxyl_2674 Rubrobacter xylanophilus DSM 9941 aminotransferase YP_645403.1 2691458 D 266117 CDS YP_645404.1 108805467 4115156 complement(2692646..2692873) 1 NC_008148.1 hypothetical protein 2692873 4115156 Rxyl_2675 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645404.1 2692646 R 266117 CDS YP_645405.1 108805468 4115157 complement(2692892..2693536) 1 NC_008148.1 KEGG: mac:MA4014 DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif HhH-GPD; SMART: Iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase/endonuclease III 2693536 4115157 Rxyl_2676 Rubrobacter xylanophilus DSM 9941 DNA-(apurinic or apyrimidinic site) lyase/endonuclease III YP_645405.1 2692892 R 266117 CDS YP_645406.1 108805469 4115158 2693604..2694902 1 NC_008148.1 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 2694902 4115158 Rxyl_2677 Rubrobacter xylanophilus DSM 9941 glucose-6-phosphate isomerase YP_645406.1 2693604 D 266117 CDS YP_645407.1 108805470 4115159 complement(2694862..2695779) 1 NC_008148.1 KEGG: sso:SSO3110 hypothetical protein; hypothetical protein 2695779 4115159 Rxyl_2678 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645407.1 2694862 R 266117 CDS YP_645408.1 108805471 4115160 2695832..2696149 1 NC_008148.1 hypothetical protein 2696149 4115160 Rxyl_2679 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645408.1 2695832 D 266117 CDS YP_645409.1 108805472 4115122 2696185..2696796 1 NC_008148.1 KEGG: mba:Mbar_A0490 hypothetical protein; hypothetical protein 2696796 4115122 Rxyl_2680 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645409.1 2696185 D 266117 CDS YP_645410.1 108805473 4115123 complement(2696992..2697180) 1 NC_008148.1 KEGG: ttj:TTHA1581 hypothetical protein; hypothetical protein 2697180 4115123 Rxyl_2681 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645410.1 2696992 R 266117 CDS YP_645411.1 108805474 4115124 2697339..2697938 1 NC_008148.1 PFAM: oxidoreductase, molybdopterin binding; KEGG: ret:RHE_CH03435 probable oxidoreductase protein; oxidoreductase protein 2697938 4115124 Rxyl_2682 Rubrobacter xylanophilus DSM 9941 oxidoreductase protein YP_645411.1 2697339 D 266117 CDS YP_645412.1 108805475 4115125 complement(2698090..2699016) 1 NC_008148.1 KEGG: sme:SMb21237 putative enzyme, C-terminal domain similar to sulfotransferase protein; sulfotransferase-like protein 2699016 4115125 Rxyl_2683 Rubrobacter xylanophilus DSM 9941 sulfotransferase-like protein YP_645412.1 2698090 R 266117 CDS YP_645413.1 108805476 4115126 complement(2699003..2700622) 1 NC_008148.1 PFAM: polysaccharide biosynthesis protein; KEGG: pab:PAB0783 polysaccharide biosynthesis related protein; polysaccharide biosynthesis protein 2700622 4115126 Rxyl_2684 Rubrobacter xylanophilus DSM 9941 polysaccharide biosynthesis protein YP_645413.1 2699003 R 266117 CDS YP_645414.1 108805477 4115127 complement(2700632..2701297) 1 NC_008148.1 hypothetical protein 2701297 4115127 Rxyl_2685 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645414.1 2700632 R 266117 CDS YP_645415.1 108805478 4115128 complement(2701301..2702773) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: sulfatase; KEGG: dde:Dde_1201 sulfatase, putative; twin-arginine translocation pathway signal protein 2702773 4115128 Rxyl_2686 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_645415.1 2701301 R 266117 CDS YP_645416.1 108805479 4115129 2702840..2703199 1 NC_008148.1 PFAM: transcriptional regulator PadR-like; KEGG: afu:AF1542 hypothetical protein; PadR family transcriptional regulator 2703199 4115129 Rxyl_2687 Rubrobacter xylanophilus DSM 9941 PadR family transcriptional regulator YP_645416.1 2702840 D 266117 CDS YP_645417.1 108805480 4115130 2703183..2704319 1 NC_008148.1 PFAM: Chromate transporter; KEGG: gvi:gll0565 chromate transport protein; chromate transporter 2704319 4115130 Rxyl_2688 Rubrobacter xylanophilus DSM 9941 chromate transporter YP_645417.1 2703183 D 266117 CDS YP_645418.1 108805481 4115131 2704385..2705023 1 NC_008148.1 KEGG: ctc:CTC01202 N-acetylmuramoyl-L-alanine amidase-like protein; hypothetical protein 2705023 4115131 Rxyl_2689 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645418.1 2704385 D 266117 CDS YP_645419.1 108805482 4115132 complement(2705017..2706393) 1 NC_008148.1 PFAM: sugar transferase; KEGG: fra:Francci3_1577 undecaprenyl-phosphate galactosephosphotransferase; undecaprenyl-phosphate galactosephosphotransferase 2706393 4115132 Rxyl_2690 Rubrobacter xylanophilus DSM 9941 undecaprenyl-phosphate galactosephosphotransferase YP_645419.1 2705017 R 266117 CDS YP_645420.1 108805483 4115133 complement(2706449..2707219) 1 NC_008148.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: mca:MCA1437 bacterial sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; WecB/TagA/CpsF family glycosyl transferase 2707219 4115133 Rxyl_2691 Rubrobacter xylanophilus DSM 9941 WecB/TagA/CpsF family glycosyl transferase YP_645420.1 2706449 R 266117 CDS YP_645421.1 108805484 4115134 complement(2707204..2708316) 1 NC_008148.1 KEGG: syd:Syncc9605_0169 glycosyltransferase-like; hypothetical protein 2708316 4115134 Rxyl_2692 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645421.1 2707204 R 266117 CDS YP_645422.1 108805485 4115135 complement(2708324..2709259) 1 NC_008148.1 hypothetical protein 2709259 4115135 Rxyl_2693 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645422.1 2708324 R 266117 CDS YP_645423.1 108805486 4115136 complement(2709256..2710863) 1 NC_008148.1 PFAM: O-antigen polymerase; KEGG: ade:Adeh_2640 O-antigen polymerase; O-antigen polymerase 2710863 4115136 Rxyl_2694 Rubrobacter xylanophilus DSM 9941 O-antigen polymerase YP_645423.1 2709256 R 266117 CDS YP_645424.1 108805487 4115137 complement(2710873..2711526) 1 NC_008148.1 KEGG: cpe:CPE0462 capsular polysaccharide biosynthesis protein; chromosome partitioning ATPase 2711526 4115137 Rxyl_2695 Rubrobacter xylanophilus DSM 9941 chromosome partitioning ATPase YP_645424.1 2710873 R 266117 CDS YP_645425.1 108805488 4115138 complement(2711534..2712265) 1 NC_008148.1 PFAM: lipopolysaccharide biosynthesis; KEGG: cpe:CPE0491 capsular polysaccharide biosynthsis protein; lipopolysaccharide biosynthesis protein 2712265 4115138 Rxyl_2696 Rubrobacter xylanophilus DSM 9941 lipopolysaccharide biosynthesis protein YP_645425.1 2711534 R 266117 CDS YP_645426.1 108805489 4115139 complement(2712252..2713058) 1 NC_008148.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: sru:SRU_2700 TPR repeat protein; TPR repeat-containing protein 2713058 4115139 Rxyl_2697 Rubrobacter xylanophilus DSM 9941 TPR repeat-containing protein YP_645426.1 2712252 R 266117 CDS YP_645427.1 108805490 4115140 complement(2713179..2713667) 1 NC_008148.1 hypothetical protein 2713667 4115140 Rxyl_2698 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645427.1 2713179 R 266117 CDS YP_645428.1 108805491 4115141 complement(2713901..2714449) 1 NC_008148.1 KEGG: atc:AGR_L_2376 hypothetical protein; hypothetical protein 2714449 4115141 Rxyl_2699 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645428.1 2713901 R 266117 CDS YP_645429.1 108805492 4116192 complement(2714618..2715130) 1 NC_008148.1 hypothetical protein 2715130 4116192 Rxyl_2700 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645429.1 2714618 R 266117 CDS YP_645430.1 108805493 4116193 complement(2715307..2715786) 1 NC_008148.1 KEGG: rno:499168 similar to protein tyrosine phosphatase, receptor type, F (predicted); hypothetical protein 2715786 4116193 Rxyl_2701 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645430.1 2715307 R 266117 CDS YP_645431.1 108805494 4116194 complement(2715917..2716315) 1 NC_008148.1 hypothetical protein 2716315 4116194 Rxyl_2702 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645431.1 2715917 R 266117 CDS YP_645432.1 108805495 4116195 complement(2716339..2716638) 1 NC_008148.1 hypothetical protein 2716638 4116195 Rxyl_2703 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645432.1 2716339 R 266117 CDS YP_645433.1 108805496 4116196 complement(2718120..2719391) 1 NC_008148.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: nfa:nfa11030 putative monooxygenase; monooxygenase 2719391 4116196 Rxyl_2705 Rubrobacter xylanophilus DSM 9941 monooxygenase YP_645433.1 2718120 R 266117 CDS YP_645434.1 108805497 4116197 complement(2719406..2719897) 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; KEGG: nfa:nfa14290 hypothetical protein; hypothetical protein 2719897 4116197 Rxyl_2706 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645434.1 2719406 R 266117 CDS YP_645435.1 108805498 4116198 complement(2720619..2721248) 1 NC_008148.1 PFAM: transcriptional regulator PadR-like; KEGG: sma:SAV6710 putative ankyrin-like protein; PadR family transcriptional regulator 2721248 4116198 Rxyl_2708 Rubrobacter xylanophilus DSM 9941 PadR family transcriptional regulator YP_645435.1 2720619 R 266117 CDS YP_645436.1 108805499 4116199 complement(2721458..2722783) 1 NC_008148.1 KEGG: tvo:TVN0083 cytochrome bd-I oxidase subunit I; cytochrome bd-type quinol oxidase subunit 1-like protein 2722783 4116199 Rxyl_2709 Rubrobacter xylanophilus DSM 9941 cytochrome bd-type quinol oxidase subunit 1-like protein YP_645436.1 2721458 R 266117 CDS YP_645437.1 108805500 4116200 complement(2722797..2723279) 1 NC_008148.1 KEGG: bha:BH1674 menaquinol-cytochrome c reductase (cytochrome b/c subunit); hypothetical protein 2723279 4116200 Rxyl_2710 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645437.1 2722797 R 266117 CDS YP_645438.1 108805501 4116201 complement(2723283..2724032) 1 NC_008148.1 PFAM: cytochrome b/b6-like; KEGG: bha:BH1673 menaquinol-cytochrome c reductase (cytochrome b subunit); cytochrome b/b6-like protein 2724032 4116201 Rxyl_2711 Rubrobacter xylanophilus DSM 9941 cytochrome b/b6-like protein YP_645438.1 2723283 R 266117 CDS YP_645439.1 108805502 4116202 complement(2724022..2724642) 1 NC_008148.1 PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 2724642 4116202 Rxyl_2712 Rubrobacter xylanophilus DSM 9941 Rieske (2Fe-2S) domain-containing protein YP_645439.1 2724022 R 266117 CDS YP_645440.1 108805503 4116203 complement(2724646..2725959) 1 NC_008148.1 hypothetical protein 2725959 4116203 Rxyl_2713 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645440.1 2724646 R 266117 CDS YP_645441.1 108805504 4116204 complement(2725956..2726576) 1 NC_008148.1 hypothetical protein 2726576 4116204 Rxyl_2714 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645441.1 2725956 R 266117 CDS YP_645442.1 108805505 4116205 2726847..2728322 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: sco:SCO2889 sugar transport protein; major facilitator transporter 2728322 4116205 Rxyl_2715 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645442.1 2726847 D 266117 CDS YP_645443.1 108805506 4116206 2728335..2728841 1 NC_008148.1 PFAM: UspA; KEGG: sth:STH924 universal stress protein; hypothetical protein 2728841 4116206 Rxyl_2716 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645443.1 2728335 D 266117 CDS YP_645444.1 108805507 4116207 2728838..2729218 1 NC_008148.1 PFAM: protein of unknown function DUF1362; KEGG: ana:alr3166 hypothetical protein; hypothetical protein 2729218 4116207 Rxyl_2717 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645444.1 2728838 D 266117 CDS YP_645445.1 108805508 4116208 2729257..2731041 1 NC_008148.1 catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 2731041 4116208 Rxyl_2718 Rubrobacter xylanophilus DSM 9941 thiamine pyrophosphate protein YP_645445.1 2729257 D 266117 CDS YP_645446.1 108805509 4116209 2731038..2732126 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO7415 racemase; mandelate racemase/muconate lactonizing-like protein 2732126 4116209 Rxyl_2719 Rubrobacter xylanophilus DSM 9941 mandelate racemase/muconate lactonizing-like protein YP_645446.1 2731038 D 266117 CDS YP_645447.1 108805510 4116210 2732164..2735238 1 NC_008148.1 PFAM: protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: noc:Noc_0464 hypothetical protein; FAD linked oxidase-like protein 2735238 4116210 Rxyl_2720 Rubrobacter xylanophilus DSM 9941 FAD linked oxidase-like protein YP_645447.1 2732164 D 266117 CDS YP_645448.1 108805511 4114820 2735240..2735692 1 NC_008148.1 PFAM: protein of unknown function DUF296; KEGG: atu:Atu4141 hypothetical protein; hypothetical protein 2735692 4114820 Rxyl_2721 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645448.1 2735240 D 266117 CDS YP_645449.1 108805512 4114821 2735806..2736483 1 NC_008148.1 similar to E.coli; KEGG: pmu:PM1452 hypothetical E.coli; hypothetical protein 2736483 4114821 Rxyl_2722 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645449.1 2735806 D 266117 CDS YP_645450.1 108805513 4114822 2736634..2737203 1 NC_008148.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: mpa:MAP0367 formate dehydrogenase alpha subunit; molybdopterin oxidoreductase Fe4S4 region 2737203 4114822 Rxyl_2723 Rubrobacter xylanophilus DSM 9941 molybdopterin oxidoreductase Fe4S4 region YP_645450.1 2736634 D 266117 CDS YP_645451.1 108805514 4114823 2737300..2739843 1 NC_008148.1 PFAM: molydopterin dinucleotide-binding region; KEGG: ade:Adeh_0824 formate dehydrogenase; formate dehydrogenase 2739843 4114823 Rxyl_2724 Rubrobacter xylanophilus DSM 9941 formate dehydrogenase YP_645451.1 2737300 D 266117 CDS YP_645452.1 108805515 4114824 2739840..2740778 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ade:Adeh_0823 4Fe-4S ferredoxin, iron-sulfur binding protein; formate dehydrogenase subunit beta 2740778 4114824 Rxyl_2725 Rubrobacter xylanophilus DSM 9941 formate dehydrogenase subunit beta YP_645452.1 2739840 D 266117 CDS YP_645453.1 108805516 4114825 2740775..2741731 1 NC_008148.1 PFAM: Polysulphide reductase, NrfD; KEGG: ade:Adeh_0822 polysulphide reductase, NrfD; polysulfide reductase, NrfD 2741731 4114825 Rxyl_2726 Rubrobacter xylanophilus DSM 9941 polysulfide reductase, NrfD YP_645453.1 2740775 D 266117 CDS YP_645454.1 108805517 4114826 2741721..2742173 1 NC_008148.1 hypothetical protein 2742173 4114826 Rxyl_2727 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645454.1 2741721 D 266117 CDS YP_645455.1 108805518 4114827 2742170..2742634 1 NC_008148.1 KEGG: mpa:MAP2360c hypothetical protein; hypothetical protein 2742634 4114827 Rxyl_2728 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645455.1 2742170 D 266117 CDS YP_645456.1 108805519 4114828 2742627..2743649 1 NC_008148.1 KEGG: mpa:MAP3258 hypothetical protein; hypothetical protein 2743649 4114828 Rxyl_2729 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645456.1 2742627 D 266117 CDS YP_645457.1 108805520 4114829 2743669..2745156 1 NC_008148.1 PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein; oxidoreductase protein 2745156 4114829 Rxyl_2730 Rubrobacter xylanophilus DSM 9941 oxidoreductase protein YP_645457.1 2743669 D 266117 CDS YP_645458.1 108805521 4114830 2745161..2745430 1 NC_008148.1 KEGG: mpa:MAP2358c hypothetical protein; hypothetical protein 2745430 4114830 Rxyl_2731 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645458.1 2745161 D 266117 CDS YP_645459.1 108805522 4114831 2745427..2745735 1 NC_008148.1 hypothetical protein 2745735 4114831 Rxyl_2732 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645459.1 2745427 D 266117 CDS YP_645460.1 108805523 4114832 2745732..2746280 1 NC_008148.1 KEGG: hma:rrnAC2456 hypothetical protein; hypothetical protein 2746280 4114832 Rxyl_2733 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645460.1 2745732 D 266117 CDS YP_645461.1 108805524 4114833 complement(2746283..2747449) 1 NC_008148.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bmb:BruAb2_0161 CAIB/BAIF family protein; L-carnitine dehydratase/bile acid-inducible protein F 2747449 4114833 Rxyl_2734 Rubrobacter xylanophilus DSM 9941 L-carnitine dehydratase/bile acid-inducible protein F YP_645461.1 2746283 R 266117 CDS YP_645462.1 108805525 4114834 complement(2747451..2748596) 1 NC_008148.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: reu:Reut_B3542 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase-like protein 2748596 4114834 Rxyl_2735 Rubrobacter xylanophilus DSM 9941 acyl-CoA dehydrogenase-like protein YP_645462.1 2747451 R 266117 CDS YP_645463.1 108805526 4114835 complement(2748593..2749975) 1 NC_008148.1 PFAM: MmgE/PrpD; KEGG: pae:PA0881 hypothetical protein; MmgE/PrpD 2749975 4114835 Rxyl_2736 Rubrobacter xylanophilus DSM 9941 MmgE/PrpD YP_645463.1 2748593 R 266117 CDS YP_645464.1 108805527 4114836 complement(2749972..2750478) 1 NC_008148.1 PFAM: MaoC-like dehydratase; KEGG: msy:MS53_0536 putative transcription regulatory protein; MaoC-like dehydratase 2750478 4114836 Rxyl_2737 Rubrobacter xylanophilus DSM 9941 MaoC-like dehydratase YP_645464.1 2749972 R 266117 CDS YP_645465.1 108805528 4114837 complement(2750560..2751279) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: rso:RSc1997 probable transcription regulator protein; GntR family transcriptional regulator 2751279 4114837 Rxyl_2738 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_645465.1 2750560 R 266117 CDS YP_645466.1 108805529 4114838 2751551..2752930 1 NC_008148.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: psb:Psyr_3936 general substrate transporter:major facilitator superfamily; major facilitator transporter 2752930 4114838 Rxyl_2739 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645466.1 2751551 D 266117 CDS YP_645467.1 108805530 4114839 2752957..2753688 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_1365 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2753688 4114839 Rxyl_2740 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645467.1 2752957 D 266117 CDS YP_645468.1 108805531 4115259 complement(2753685..2754674) 1 NC_008148.1 PFAM: Asparaginase/glutaminase; KEGG: bms:BR1962 asparaginase family protein; asparaginase 2754674 4115259 Rxyl_2741 Rubrobacter xylanophilus DSM 9941 asparaginase YP_645468.1 2753685 R 266117 CDS YP_645469.1 108805532 4115260 2754821..2755780 1 NC_008148.1 PFAM: polysaccharide deacetylase; KEGG: psp:PSPPH_3934 polysaccharide deacetylase family protein; polysaccharide deacetylase 2755780 4115260 Rxyl_2742 Rubrobacter xylanophilus DSM 9941 polysaccharide deacetylase YP_645469.1 2754821 D 266117 CDS YP_645470.1 108805533 4115261 2755793..2756140 1 NC_008148.1 KEGG: hpy:HP0311 hypothetical protein; hypothetical protein 2756140 4115261 Rxyl_2743 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645470.1 2755793 D 266117 CDS YP_645471.1 108805534 4115262 2756144..2757130 1 NC_008148.1 PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: mag:amb2306 putative GTPase; cobalamin synthesis protein, P47K 2757130 4115262 Rxyl_2744 Rubrobacter xylanophilus DSM 9941 cobalamin synthesis protein, P47K YP_645471.1 2756144 D 266117 CDS YP_645472.1 108805535 4115263 2757144..2758397 1 NC_008148.1 KEGG: ret:RHE_CH00350 probable N-carbamoyl-L-amino acid amidohydrolase protein; TIGRFAM: Amidase, hydantoinase/carbamoylase; PFAM: peptidase M20 peptidase dimerisation; hydantoinase/carbamoylase 2758397 4115263 Rxyl_2745 Rubrobacter xylanophilus DSM 9941 hydantoinase/carbamoylase YP_645472.1 2757144 D 266117 CDS YP_645473.1 108805536 4115264 2758436..2759863 1 NC_008148.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2759863 4115264 Rxyl_2746 Rubrobacter xylanophilus DSM 9941 phenylhydantoinase YP_645473.1 2758436 D 266117 CDS YP_645474.1 108805537 4115265 2759869..2760519 1 NC_008148.1 PFAM: isochorismatase hydrolase; KEGG: nph:NP6214A homolog 1 to N-carbamoylsarcosine amidase; N-carbamoylsarcosine amidase 2760519 4115265 Rxyl_2747 Rubrobacter xylanophilus DSM 9941 N-carbamoylsarcosine amidase YP_645474.1 2759869 D 266117 CDS YP_645475.1 108805538 4115266 2760555..2761397 1 NC_008148.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 2761397 4115266 Rxyl_2748 Rubrobacter xylanophilus DSM 9941 fumarate hydratase YP_645475.1 2760555 D 266117 CDS YP_645476.1 108805539 4115267 2761394..2761960 1 NC_008148.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: sth:STH2535 fumarate hydratase subunit B; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 2761960 4115267 Rxyl_2749 Rubrobacter xylanophilus DSM 9941 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta YP_645476.1 2761394 D 266117 CDS YP_645477.1 108805540 4115268 complement(2761966..2763000) 1 NC_008148.1 PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_0080 hypothetical protein; hypothetical protein 2763000 4115268 Rxyl_2750 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645477.1 2761966 R 266117 CDS YP_645478.1 108805541 4115269 2763133..2764170 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO7413 short chain dehydrogenase; short chain dehydrogenase 2764170 4115269 Rxyl_2751 Rubrobacter xylanophilus DSM 9941 short chain dehydrogenase YP_645478.1 2763133 D 266117 CDS YP_645479.1 108805542 4115270 2764167..2764700 1 NC_008148.1 PFAM: Vitamin K epoxide reductase; KEGG: eba:ebA4552 hypothetical protein; vitamin K epoxide reductase 2764700 4115270 Rxyl_2752 Rubrobacter xylanophilus DSM 9941 vitamin K epoxide reductase YP_645479.1 2764167 D 266117 CDS YP_645480.1 108805543 4115271 2764704..2765063 1 NC_008148.1 KEGG: sme:SMb20012 hypothetical protein; hypothetical protein 2765063 4115271 Rxyl_2753 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645480.1 2764704 D 266117 CDS YP_645481.1 108805544 4115272 2765065..2766888 1 NC_008148.1 PFAM: glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 2766888 4115272 Rxyl_2754 Rubrobacter xylanophilus DSM 9941 glycoside hydrolase 15-like protein YP_645481.1 2765065 D 266117 CDS YP_645482.1 108805545 4115273 2767077..2767976 1 NC_008148.1 PFAM: Polyprenyl synthetase; KEGG: cya:CYA_0377 geranylgeranyl diphosphate synthase; farnesyl-diphosphate synthase 2767976 4115273 Rxyl_2755 Rubrobacter xylanophilus DSM 9941 farnesyl-diphosphate synthase YP_645482.1 2767077 D 266117 CDS YP_645483.1 108805546 4115274 2767999..2769663 1 NC_008148.1 PFAM: Prenyltransferase/squalene oxidase; KEGG: rba:RB5934 probable squalene-hopene cyclase; prenyltransferase/squalene oxidase 2769663 4115274 Rxyl_2756 Rubrobacter xylanophilus DSM 9941 prenyltransferase/squalene oxidase YP_645483.1 2767999 D 266117 CDS YP_645484.1 108805547 4115275 2769660..2770634 1 NC_008148.1 PFAM: UbiA prenyltransferase; KEGG: pab:PAB0018 4-hydroxybenzoate octaprenyltransferase, putative; UbiA prenyltransferase 2770634 4115275 Rxyl_2757 Rubrobacter xylanophilus DSM 9941 UbiA prenyltransferase YP_645484.1 2769660 D 266117 CDS YP_645485.1 108805548 4115276 2770844..2771749 1 NC_008148.1 KEGG: pae:PA4313 hypothetical protein; hypothetical protein 2771749 4115276 Rxyl_2758 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645485.1 2770844 D 266117 CDS YP_645486.1 108805549 4115277 complement(2771814..2772419) 1 NC_008148.1 TIGRFAM: Alkylhydroperoxidase AhpD core Uncharacterised peroxidase-related; PFAM: Carboxymuconolactone decarboxylase; KEGG: rsp:RSP_3419 hypothetical protein; hypothetical protein 2772419 4115277 Rxyl_2759 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645486.1 2771814 R 266117 CDS YP_645487.1 108805550 4117302 complement(2772440..2773423) 1 NC_008148.1 PFAM: aldo/keto reductase; KEGG: ade:Adeh_3036 aldo/keto reductase; aldo/keto reductase 2773423 4117302 Rxyl_2760 Rubrobacter xylanophilus DSM 9941 aldo/keto reductase YP_645487.1 2772440 R 266117 CDS YP_645488.1 108805551 4117303 2773628..2774167 1 NC_008148.1 KEGG: mba:Mbar_A0937 hypothetical protein; hypothetical protein 2774167 4117303 Rxyl_2761 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645488.1 2773628 D 266117 CDS YP_645489.1 108805552 4117304 complement(2774586..2776319) 1 NC_008148.1 KEGG: deh:cbdb_A1049 glutamine-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase NAD+ synthase; NH(3)-dependent NAD(+) synthetase 2776319 4117304 Rxyl_2763 Rubrobacter xylanophilus DSM 9941 NH(3)-dependent NAD(+) synthetase YP_645489.1 2774586 R 266117 CDS YP_645490.1 108805553 4117305 2776387..2776818 1 NC_008148.1 hypothetical protein 2776818 4117305 Rxyl_2764 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645490.1 2776387 D 266117 CDS YP_645491.1 108805554 4117306 complement(2776815..2777444) 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: cac:CAC0446 hydrolase of MutT (Nudix) family; NUDIX hydrolase 2777444 4117306 Rxyl_2765 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_645491.1 2776815 R 266117 CDS YP_645492.1 108805555 4117307 2777545..2778576 1 NC_008148.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sil:SPO1700 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase 2778576 4117307 Rxyl_2766 Rubrobacter xylanophilus DSM 9941 D-isomer specific 2-hydroxyacid dehydrogenase YP_645492.1 2777545 D 266117 CDS YP_645493.1 108805556 4117308 2778758..2780062 1 NC_008148.1 PFAM: CBS protein of unknown function DUF21 transporter-associated region; KEGG: hma:rrnAC1898 hypothetical protein; hypothetical protein 2780062 4117308 Rxyl_2767 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645493.1 2778758 D 266117 CDS YP_645494.1 108805557 4117309 complement(2780067..2780378) 1 NC_008148.1 KEGG: dra:DR2097 hypothetical protein; hypothetical protein 2780378 4117309 Rxyl_2768 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645494.1 2780067 R 266117 CDS YP_645495.1 108805558 4117310 complement(2780395..2782251) 1 NC_008148.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: gvi:glr1067 HlyB/MsbA family ABC transporter; ABC transporter-like protein 2782251 4117310 Rxyl_2769 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645495.1 2780395 R 266117 CDS YP_645496.1 108805559 4117311 2782268..2782660 1 NC_008148.1 KEGG: ade:Adeh_0512 hypothetical protein; response regulator receiver protein 2782660 4117311 Rxyl_2770 Rubrobacter xylanophilus DSM 9941 response regulator receiver protein YP_645496.1 2782268 D 266117 CDS YP_645497.1 108805560 4117312 2782650..2783228 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: cte:CT1365 NUDIX/MutT family protein, putative; NUDIX hydrolase 2783228 4117312 Rxyl_2771 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_645497.1 2782650 D 266117 CDS YP_645498.1 108805561 4117313 complement(2783270..2783695) 1 NC_008148.1 PFAM: HesB/YadR/YfhF; KEGG: aae:aq_1857 hypothetical protein; HesB/YadR/YfhF 2783695 4117313 Rxyl_2772 Rubrobacter xylanophilus DSM 9941 HesB/YadR/YfhF YP_645498.1 2783270 R 266117 CDS YP_645499.1 108805562 4117314 complement(2783692..2785941) 1 NC_008148.1 PFAM: transglutaminase-like; KEGG: hma:rrnAC3056 hypothetical protein; transglutaminase 2785941 4117314 Rxyl_2773 Rubrobacter xylanophilus DSM 9941 transglutaminase YP_645499.1 2783692 R 266117 CDS YP_645500.1 108805563 4117315 complement(2785938..2787173) 1 NC_008148.1 PFAM: protein of unknown function DUF58; KEGG: sma:SAV6111 putative membrane protein; hypothetical protein 2787173 4117315 Rxyl_2774 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645500.1 2785938 R 266117 CDS YP_645501.1 108805564 4117316 complement(2787173..2788132) 1 NC_008148.1 PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: sth:STH2553 methanol dehydrogenase regulatory protein; ATPase 2788132 4117316 Rxyl_2775 Rubrobacter xylanophilus DSM 9941 ATPase YP_645501.1 2787173 R 266117 CDS YP_645502.1 108805565 4117317 complement(2788230..2788769) 1 NC_008148.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: syf:Synpcc7942_2202 HNH nuclease; HNH endonuclease 2788769 4117317 Rxyl_2776 Rubrobacter xylanophilus DSM 9941 HNH endonuclease YP_645502.1 2788230 R 266117 CDS YP_645503.1 108805566 4117318 complement(2788851..2789318) 1 NC_008148.1 hypothetical protein 2789318 4117318 Rxyl_2777 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645503.1 2788851 R 266117 CDS YP_645504.1 108805567 4117319 complement(2789366..2789872) 1 NC_008148.1 PFAM: Ferritin and Dps; KEGG: sth:STH544 ferritin; Ferritin and Dps 2789872 4117319 Rxyl_2778 Rubrobacter xylanophilus DSM 9941 Ferritin and Dps YP_645504.1 2789366 R 266117 CDS YP_645505.1 108805568 4117320 complement(2789934..2790980) 1 NC_008148.1 PFAM: protein of unknown function DUF1611; KEGG: cyb:CYB_2146 hypothetical protein; hypothetical protein 2790980 4117320 Rxyl_2779 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645505.1 2789934 R 266117 CDS YP_645506.1 108805569 4117321 complement(2790980..2791999) 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: nph:NP2480A mandelate racemase homolog / muconate lactonizing enzyme homolog; mandelate racemase/muconate lactonizing-like protein 2791999 4117321 Rxyl_2780 Rubrobacter xylanophilus DSM 9941 mandelate racemase/muconate lactonizing-like protein YP_645506.1 2790980 R 266117 CDS YP_645507.1 108805570 4117614 2792136..2792861 1 NC_008148.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: tfu:Tfu_2910 response regulator receiver; two component transcriptional regulator 2792861 4117614 Rxyl_2781 Rubrobacter xylanophilus DSM 9941 two component transcriptional regulator YP_645507.1 2792136 D 266117 CDS YP_645508.1 108805571 4117615 2792864..2793637 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mta:Moth_2494 multi-sensor signal transduction histidine kinase; histidine kinase 2793637 4117615 Rxyl_2782 Rubrobacter xylanophilus DSM 9941 histidine kinase YP_645508.1 2792864 D 266117 CDS YP_645509.1 108805572 4117616 complement(2793594..2796899) 1 NC_008148.1 KEGG: syn:slr0359 hypothetical protein; TIGRFAM: GGDEF domain; PFAM: GGDEF EAL GAF PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2796899 4117616 Rxyl_2783 Rubrobacter xylanophilus DSM 9941 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_645509.1 2793594 R 266117 CDS YP_645510.1 108805573 4117617 2797124..2797795 1 NC_008148.1 PFAM: TENA/THI-4 protein; KEGG: sto:ST1007 hypothetical transcriptional activator; TenA family transcription regulator 2797795 4117617 Rxyl_2784 Rubrobacter xylanophilus DSM 9941 TenA family transcription regulator YP_645510.1 2797124 D 266117 CDS YP_645511.1 108805574 4117618 complement(2797805..2798011) 1 NC_008148.1 PFAM: ChaB; KEGG: rfe:RF_1086 cation transport regulator ChaB; ChaB protein 2798011 4117618 Rxyl_2785 Rubrobacter xylanophilus DSM 9941 ChaB protein YP_645511.1 2797805 R 266117 CDS YP_645512.1 108805575 4117619 complement(2798076..2799020) 1 NC_008148.1 KEGG: tfu:Tfu_0643 thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein-like; thiamine-monophosphate kinase 2799020 4117619 Rxyl_2786 Rubrobacter xylanophilus DSM 9941 thiamine-monophosphate kinase YP_645512.1 2798076 R 266117 CDS YP_645513.1 108805576 4117620 complement(2799017..2799898) 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: dra:DR0329 MutT/NUDIX family protein; NUDIX hydrolase 2799898 4117620 Rxyl_2787 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_645513.1 2799017 R 266117 CDS YP_645514.1 108805577 4117621 complement(2799895..2800521) 1 NC_008148.1 KEGG: gvi:gll0403 probable thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2800521 4117621 Rxyl_2788 Rubrobacter xylanophilus DSM 9941 thiamine-phosphate pyrophosphorylase YP_645514.1 2799895 R 266117 CDS YP_645515.1 108805578 4117622 complement(2800549..2801058) 1 NC_008148.1 TIGRFAM: ThiW; KEGG: pai:PAE2529 hypothetical protein; ThiW 2801058 4117622 Rxyl_2789 Rubrobacter xylanophilus DSM 9941 ThiW YP_645515.1 2800549 R 266117 CDS YP_645516.1 108805579 4117623 complement(2801042..2801845) 1 NC_008148.1 PFAM: hydroxyethylthiazole kinase; KEGG: mhu:Mhun_2217 hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 2801845 4117623 Rxyl_2790 Rubrobacter xylanophilus DSM 9941 hydroxyethylthiazole kinase YP_645516.1 2801042 R 266117 CDS YP_645517.1 108805580 4117624 complement(2801842..2802636) 1 NC_008148.1 KEGG: mta:Moth_0867 phosphomethylpyrimidine kinase; TIGRFAM: Phosphomethylpyrimidine kinase type-2; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-2 2802636 4117624 Rxyl_2791 Rubrobacter xylanophilus DSM 9941 phosphomethylpyrimidine kinase type-2 YP_645517.1 2801842 R 266117 CDS YP_645518.1 108805581 4117625 complement(2802633..2803274) 1 NC_008148.1 PFAM: TENA/THI-4 protein; KEGG: pfu:PF1337 transcriptional activator, putative; TenA family transcription regulator 2803274 4117625 Rxyl_2792 Rubrobacter xylanophilus DSM 9941 TenA family transcription regulator YP_645518.1 2802633 R 266117 CDS YP_645519.1 108805582 4117626 complement(2803986..2804531) 1 NC_008148.1 PFAM: NUDIX hydrolase; KEGG: mta:Moth_1504 NUDIX hydrolase; NUDIX hydrolase 2804531 4117626 Rxyl_2794 Rubrobacter xylanophilus DSM 9941 NUDIX hydrolase YP_645519.1 2803986 R 266117 CDS YP_645520.1 108805583 4117627 complement(2804605..2804844) 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ttj:TTHA0177 ferredoxin; 4Fe-4S ferredoxin 2804844 4117627 Rxyl_2795 Rubrobacter xylanophilus DSM 9941 4Fe-4S ferredoxin YP_645520.1 2804605 R 266117 CDS YP_645521.1 108805584 4117628 complement(2805002..2805754) 1 NC_008148.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/FNR family transcriptional regulator 2805754 4117628 Rxyl_2796 Rubrobacter xylanophilus DSM 9941 Crp/FNR family transcriptional regulator YP_645521.1 2805002 R 266117 CDS YP_645522.1 108805585 4117629 complement(2805847..2807295) 1 NC_008148.1 TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: tte:TTE0749 permeases of the major facilitator superfamily; EmrB/QacA family drug resistance transporter 2807295 4117629 Rxyl_2797 Rubrobacter xylanophilus DSM 9941 EmrB/QacA family drug resistance transporter YP_645522.1 2805847 R 266117 CDS YP_645523.1 108805586 4117630 2807418..2808125 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO1740 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2808125 4117630 Rxyl_2798 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645523.1 2807418 D 266117 CDS YP_645524.1 108805587 4117631 complement(2808138..2808794) 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: cpe:CPE2315 sortase, putative; peptidase C60, sortase A and B 2808794 4117631 Rxyl_2799 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_645524.1 2808138 R 266117 CDS YP_645525.1 108805588 4117632 complement(2808824..2810716) 1 NC_008148.1 PFAM: amino acid permease-associated region; KEGG: sai:Saci_2189 conserved archaeal membrane protein; amino acid permease-associated protein 2810716 4117632 Rxyl_2800 Rubrobacter xylanophilus DSM 9941 amino acid permease-associated protein YP_645525.1 2808824 R 266117 CDS YP_645526.1 108805589 4117633 complement(2810791..2811210) 1 NC_008148.1 hypothetical protein 2811210 4117633 Rxyl_2801 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645526.1 2810791 R 266117 CDS YP_645527.1 108805590 4117634 complement(2811272..2812144) 1 NC_008148.1 PFAM: Rhodanese-like; KEGG: rsp:RSP_0885 thiosulfate sulfurtransferase, rhodanese-like; thiosulfate sulfurtransferase 2812144 4117634 Rxyl_2802 Rubrobacter xylanophilus DSM 9941 thiosulfate sulfurtransferase YP_645527.1 2811272 R 266117 CDS YP_645528.1 108805591 4117635 complement(2812141..2813673) 1 NC_008148.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; polynucleotide adenylyltransferase 2813673 4117635 Rxyl_2803 Rubrobacter xylanophilus DSM 9941 polynucleotide adenylyltransferase YP_645528.1 2812141 R 266117 CDS YP_645529.1 108805592 4117636 complement(2813691..2814128) 1 NC_008148.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fra:Francci3_4302 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist 2814128 4117636 Rxyl_2804 Rubrobacter xylanophilus DSM 9941 anti-sigma-factor antagonist YP_645529.1 2813691 R 266117 CDS YP_645530.1 108805593 4117637 2814208..2814777 1 NC_008148.1 PFAM: protein of unknown function DUF88; KEGG: tth:TTC0692 hypothetical protein; hypothetical protein 2814777 4117637 Rxyl_2805 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645530.1 2814208 D 266117 CDS YP_645531.1 108805594 4117638 2814913..2816421 1 NC_008148.1 PFAM: thiamine biosynthesis protein THUMP ExsB PP-loop; KEGG: pai:PAE3421 thiamine biosynthesis protein, probable; thiamine biosynthesis protein 2816421 4117638 Rxyl_2806 Rubrobacter xylanophilus DSM 9941 thiamine biosynthesis protein YP_645531.1 2814913 D 266117 CDS YP_645532.1 108805595 4117639 complement(2816418..2817311) 1 NC_008148.1 KEGG: stl:stu1539 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase-like UDP-N-acetylenolpyruvoylglucosamine reductase-like; UDP-N-acetylmuramate dehydrogenase 2817311 4117639 Rxyl_2807 Rubrobacter xylanophilus DSM 9941 UDP-N-acetylmuramate dehydrogenase YP_645532.1 2816418 R 266117 CDS YP_645533.1 108805596 4117640 2817371..2818411 1 NC_008148.1 PFAM: transferase hexapeptide repeat Nucleotidyl transferase; KEGG: gvi:gll3341 mannose-1-phosphate guanyltransferase / phosphomannomutase; nucleotidyl transferase 2818411 4117640 Rxyl_2808 Rubrobacter xylanophilus DSM 9941 nucleotidyl transferase YP_645533.1 2817371 D 266117 CDS YP_645534.1 108805597 4117641 complement(2818419..2819078) 1 NC_008148.1 PFAM: regulatory protein, LuxR response regulator receiver sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sth:STH2728 two-component response regulator; two component LuxR family transcriptional regulator 2819078 4117641 Rxyl_2809 Rubrobacter xylanophilus DSM 9941 two component LuxR family transcriptional regulator YP_645534.1 2818419 R 266117 CDS YP_645535.1 108805598 4117642 complement(2819075..2820580) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase, dimerisation and phosphoacceptor region; KEGG: bha:BH1199 two-component sensor histidine kinase; putative signal transduction histidine kinase 2820580 4117642 Rxyl_2810 Rubrobacter xylanophilus DSM 9941 putative signal transduction histidine kinase YP_645535.1 2819075 R 266117 CDS YP_645536.1 108805599 4117643 complement(2820776..2821276) 1 NC_008148.1 hypothetical protein 2821276 4117643 Rxyl_2811 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645536.1 2820776 R 266117 CDS YP_645537.1 108805600 4117644 complement(2821386..2821925) 1 NC_008148.1 KEGG: bld:BLi03431 YmcC; hypothetical protein 2821925 4117644 Rxyl_2812 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645537.1 2821386 R 266117 CDS YP_645538.1 108805601 4117645 2822012..2822659 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: bsu:BG12647 transcriptional regulator of the polyketide synthase operon; TetR family transcriptional regulator 2822659 4117645 Rxyl_2813 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_645538.1 2822012 D 266117 CDS YP_645539.1 108805602 4117646 complement(2822625..2823212) 1 NC_008148.1 KEGG: ava:Ava_4395 hypothetical protein; hypothetical protein 2823212 4117646 Rxyl_2814 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645539.1 2822625 R 266117 CDS YP_645540.1 108805603 4117647 complement(2823378..2823965) 1 NC_008148.1 hypothetical protein 2823965 4117647 Rxyl_2815 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645540.1 2823378 R 266117 CDS YP_645541.1 108805604 4117648 complement(2823978..2824424) 1 NC_008148.1 KEGG: pha:PSHAa0070 hypothetical protein; hypothetical protein 2824424 4117648 Rxyl_2816 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645541.1 2823978 R 266117 CDS YP_645542.1 108805605 4117649 2825256..2825738 1 NC_008148.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: sth:STH1242 signal peptidase II; signal peptidase II 2825738 4117649 Rxyl_2818 Rubrobacter xylanophilus DSM 9941 signal peptidase II YP_645542.1 2825256 D 266117 CDS YP_645543.1 108805606 4117650 complement(2825735..2826385) 1 NC_008148.1 PFAM: regulatory protein, ArsR; KEGG: sru:SRU_0138 transcriptional regulatory protein, putative; putative transcriptional regulator 2826385 4117650 Rxyl_2819 Rubrobacter xylanophilus DSM 9941 putative transcriptional regulator YP_645543.1 2825735 R 266117 CDS YP_645544.1 108805607 4117651 2826541..2827068 1 NC_008148.1 KEGG: noc:Noc_1447 hypothetical protein; hypothetical protein 2827068 4117651 Rxyl_2820 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645544.1 2826541 D 266117 CDS YP_645545.1 108805608 4117652 2827072..2827380 1 NC_008148.1 PFAM: Rieske [2Fe-2S] region; KEGG: sco:SCO1923 putative dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein 2827380 4117652 Rxyl_2821 Rubrobacter xylanophilus DSM 9941 Rieske (2Fe-2S) domain-containing protein YP_645545.1 2827072 D 266117 CDS YP_645546.1 108805609 4117673 2827380..2828618 1 NC_008148.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7117 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2828618 4117673 Rxyl_2822 Rubrobacter xylanophilus DSM 9941 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_645546.1 2827380 D 266117 CDS YP_645547.1 108805610 4117674 2828642..2828962 1 NC_008148.1 hypothetical protein 2828962 4117674 Rxyl_2823 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645547.1 2828642 D 266117 CDS YP_645548.1 108805611 4117675 complement(2829052..2831034) 1 NC_008148.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2831034 4117675 Rxyl_2824 Rubrobacter xylanophilus DSM 9941 aconitate hydratase YP_645548.1 2829052 R 266117 CDS YP_645549.1 108805612 4117676 complement(2831112..2831846) 1 NC_008148.1 KEGG: sco:SCO7819 putative integral membrane protein; putative integral membrane protein 2831846 4117676 Rxyl_2825 Rubrobacter xylanophilus DSM 9941 putative integral membrane protein YP_645549.1 2831112 R 266117 CDS YP_645550.1 108805613 4117677 complement(2831853..2832401) 1 NC_008148.1 KEGG: aba:Acid345_3971 putative secreted protein; putative secreted protein 2832401 4117677 Rxyl_2826 Rubrobacter xylanophilus DSM 9941 putative secreted protein YP_645550.1 2831853 R 266117 CDS YP_645551.1 108805614 4117678 complement(2832758..2833189) 1 NC_008148.1 hypothetical protein 2833189 4117678 Rxyl_2827 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645551.1 2832758 R 266117 CDS YP_645552.1 108805615 4117679 complement(2833193..2833801) 1 NC_008148.1 PFAM: thymidine kinase; KEGG: bsu:BG10419 thymidine kinase; thymidine kinase 2833801 4117679 Rxyl_2828 Rubrobacter xylanophilus DSM 9941 thymidine kinase YP_645552.1 2833193 R 266117 CDS YP_645553.1 108805616 4117680 complement(2833818..2834576) 1 NC_008148.1 KEGG: wsu:WS0200 hypothetical protein; hypothetical protein 2834576 4117680 Rxyl_2829 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645553.1 2833818 R 266117 CDS YP_645554.1 108805617 4117681 complement(2834614..2835528) 1 NC_008148.1 PFAM: HpcH/HpaI aldolase; KEGG: sil:SPO1565 citrate lyase, putative; Citryl-CoA lyase 2835528 4117681 Rxyl_2830 Rubrobacter xylanophilus DSM 9941 Citryl-CoA lyase YP_645554.1 2834614 R 266117 CDS YP_645555.1 108805618 4117682 complement(2835525..2836949) 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region; KEGG: ava:Ava_4555 hypothetical protein; hypothetical protein 2836949 4117682 Rxyl_2831 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645555.1 2835525 R 266117 CDS YP_645556.1 108805619 4117683 complement(2836996..2838270) 1 NC_008148.1 PFAM: FAD linked oxidase-like; KEGG: ade:Adeh_2866 FAD linked oxidase-like; FAD linked oxidase-like protein 2838270 4117683 Rxyl_2832 Rubrobacter xylanophilus DSM 9941 FAD linked oxidase-like protein YP_645556.1 2836996 R 266117 CDS YP_645557.1 108805620 4117684 complement(2838270..2839724) 1 NC_008148.1 PFAM: FAD linked oxidase-like; KEGG: ava:Ava_2520 glycolate oxidase subunit GlcD; D-lactate dehydrogenase 2839724 4117684 Rxyl_2833 Rubrobacter xylanophilus DSM 9941 D-lactate dehydrogenase YP_645557.1 2838270 R 266117 CDS YP_645558.1 108805621 4117685 2839923..2841371 1 NC_008148.1 TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bps:BPSL2120 putative transport-related membrane protein; NCS1 nucleoside transporter 2841371 4117685 Rxyl_2834 Rubrobacter xylanophilus DSM 9941 NCS1 nucleoside transporter YP_645558.1 2839923 D 266117 CDS YP_645559.1 108805622 4117686 2841463..2841990 1 NC_008148.1 KEGG: chy:CHY_1067 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 2841990 4117686 Rxyl_2835 Rubrobacter xylanophilus DSM 9941 hypoxanthine phosphoribosyltransferase YP_645559.1 2841463 D 266117 CDS YP_645560.1 108805623 4117687 2842140..2843009 1 NC_008148.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sma:SAV2069 putative dehydrogenase; molybdopterin dehydrogenase protein 2843009 4117687 Rxyl_2836 Rubrobacter xylanophilus DSM 9941 molybdopterin dehydrogenase protein YP_645560.1 2842140 D 266117 CDS YP_645561.1 108805624 4117688 2843013..2843474 1 NC_008148.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll2289 carbon-monoxide dehydrogenase small chain; (2Fe-2S)-binding protein 2843474 4117688 Rxyl_2837 Rubrobacter xylanophilus DSM 9941 (2Fe-2S)-binding protein YP_645561.1 2843013 D 266117 CDS YP_645562.1 108805625 4117689 2843471..2844847 1 NC_008148.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 2844847 4117689 Rxyl_2838 Rubrobacter xylanophilus DSM 9941 hydroxydechloroatrazine ethylaminohydrolase YP_645562.1 2843471 D 266117 CDS YP_645563.1 108805626 4117690 2844844..2847201 1 NC_008148.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: sco:SCO6172 oxidoreductase; xanthine dehydrogenase, molybdenum binding subunit apoprotein 2847201 4117690 Rxyl_2839 Rubrobacter xylanophilus DSM 9941 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_645563.1 2844844 D 266117 CDS YP_645564.1 108805627 4117691 2847514..2848890 1 NC_008148.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dra:DRA0176 xanthine permease, putative; uracil-xanthine permease 2848890 4117691 Rxyl_2840 Rubrobacter xylanophilus DSM 9941 uracil-xanthine permease YP_645564.1 2847514 D 266117 CDS YP_645565.1 108805628 4115818 2848892..2849428 1 NC_008148.1 KEGG: dra:DR1158 hypothetical protein; hypothetical protein 2849428 4115818 Rxyl_2841 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645565.1 2848892 D 266117 CDS YP_645566.1 108805629 4115819 2849462..2850046 1 NC_008148.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pca:Pcar_0660 cytidine and deoxycytidylate deaminase family protein; CMP/dCMP deaminase 2850046 4115819 Rxyl_2842 Rubrobacter xylanophilus DSM 9941 CMP/dCMP deaminase YP_645566.1 2849462 D 266117 CDS YP_645567.1 108805630 4115820 2850063..2850947 1 NC_008148.1 PFAM: Uricase; KEGG: dra:DR1160 uricase; urate oxidase 2850947 4115820 Rxyl_2843 Rubrobacter xylanophilus DSM 9941 urate oxidase YP_645567.1 2850063 D 266117 CDS YP_645568.1 108805631 4115821 2850944..2851279 1 NC_008148.1 PFAM: Transthyretin; KEGG: sme:SMb20872 conserved hypothetical protein, transthyretin-like protein; transthyretin 2851279 4115821 Rxyl_2844 Rubrobacter xylanophilus DSM 9941 transthyretin YP_645568.1 2850944 D 266117 CDS YP_645569.1 108805632 4115822 2851280..2852644 1 NC_008148.1 KEGG: dra:DR1153 allantoinase, putative; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase Amidohydrolase 3; dihydroorotase, multifunctional complex type 2852644 4115822 Rxyl_2845 Rubrobacter xylanophilus DSM 9941 dihydroorotase, multifunctional complex type YP_645569.1 2851280 D 266117 CDS YP_645570.1 108805633 4115823 2852641..2853054 1 NC_008148.1 KEGG: psb:Psyr_2500 hypothetical protein; hypothetical protein 2853054 4115823 Rxyl_2846 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645570.1 2852641 D 266117 CDS YP_645571.1 108805634 4115824 2853074..2854093 1 NC_008148.1 PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: pfu:PF0599 aspartate carbamoyltransferase catalytic chain; aspartate carbamoyltransferase 2854093 4115824 Rxyl_2847 Rubrobacter xylanophilus DSM 9941 aspartate carbamoyltransferase YP_645571.1 2853074 D 266117 CDS YP_645572.1 108805635 4115825 2854097..2855038 1 NC_008148.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2855038 4115825 Rxyl_2848 Rubrobacter xylanophilus DSM 9941 carbamate kinase YP_645572.1 2854097 D 266117 CDS YP_645573.1 108805636 4115826 2855035..2856027 1 NC_008148.1 PFAM: Asparaginase/glutaminase; KEGG: bmb:BruAb1_1936 L-asparaginase type II, hypothetical; asparaginase 2856027 4115826 Rxyl_2849 Rubrobacter xylanophilus DSM 9941 asparaginase YP_645573.1 2855035 D 266117 CDS YP_645574.1 108805637 4115827 2856111..2856893 1 NC_008148.1 PFAM: regulatory proteins, IclR; KEGG: sco:SCO6246 transcriptional regulator for glyoxylate bypass; IclR family transcriptional regulator 2856893 4115827 Rxyl_2850 Rubrobacter xylanophilus DSM 9941 IclR family transcriptional regulator YP_645574.1 2856111 D 266117 CDS YP_645575.1 108805638 4115828 2857144..2857956 1 NC_008148.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: bpm:BURPS1710b_2425 hydroxypyruvate isomerase; hydroxypyruvate isomerase 2857956 4115828 Rxyl_2851 Rubrobacter xylanophilus DSM 9941 hydroxypyruvate isomerase YP_645575.1 2857144 D 266117 CDS YP_645576.1 108805639 4115829 2857973..2858866 1 NC_008148.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sco:SCO6205 putative dehydrogenase; 2-hydroxy-3-oxopropionate reductase 2858866 4115829 Rxyl_2852 Rubrobacter xylanophilus DSM 9941 2-hydroxy-3-oxopropionate reductase YP_645576.1 2857973 D 266117 CDS YP_645577.1 108805640 4115830 2858878..2860629 1 NC_008148.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 2860629 4115830 Rxyl_2853 Rubrobacter xylanophilus DSM 9941 glyoxylate carboligase YP_645577.1 2858878 D 266117 CDS YP_645578.1 108805641 4115831 2860629..2861915 1 NC_008148.1 PFAM: MOFRL; KEGG: dvu:DVU0765 hydroxypyruvate reductase, putative; glycerate 2-kinase 2861915 4115831 Rxyl_2854 Rubrobacter xylanophilus DSM 9941 glycerate 2-kinase YP_645578.1 2860629 D 266117 CDS YP_645579.1 108805642 4115832 2861912..2862283 1 NC_008148.1 KEGG: gvi:glr0668 hypothetical protein; cell wall biosynthesis glycosyltransferase-like protein 2862283 4115832 Rxyl_2855 Rubrobacter xylanophilus DSM 9941 cell wall biosynthesis glycosyltransferase-like protein YP_645579.1 2861912 D 266117 CDS YP_645580.1 108805643 4115833 2862325..2863815 1 NC_008148.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mta:Moth_1132 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 2863815 4115833 Rxyl_2856 Rubrobacter xylanophilus DSM 9941 glutamyl-tRNA synthetase YP_645580.1 2862325 D 266117 CDS YP_645581.1 108805644 4115834 complement(2863969..2864532) 1 NC_008148.1 KEGG: cch:Cag_0630 hypothetical protein; hypothetical protein 2864532 4115834 Rxyl_2857 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645581.1 2863969 R 266117 CDS YP_645582.1 108805645 4115835 2864552..2865382 1 NC_008148.1 hypothetical protein 2865382 4115835 Rxyl_2858 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645582.1 2864552 D 266117 CDS YP_645583.1 108805646 4115836 complement(2865339..2865929) 1 NC_008148.1 KEGG: mma:MM1281 hypothetical protein; hypothetical protein 2865929 4115836 Rxyl_2859 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645583.1 2865339 R 266117 CDS YP_645584.1 108805647 4115837 2866023..2866550 1 NC_008148.1 hypothetical protein 2866550 4115837 Rxyl_2860 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645584.1 2866023 D 266117 CDS YP_645585.1 108805648 4115858 complement(2866560..2866802) 1 NC_008148.1 PFAM: nitrogen-fixing NifU-like; KEGG: tte:TTE1742 thioredoxin-like proteins and domains; nitrogen-fixing NifU-like protein 2866802 4115858 Rxyl_2861 Rubrobacter xylanophilus DSM 9941 nitrogen-fixing NifU-like protein YP_645585.1 2866560 R 266117 CDS YP_645586.1 108805649 4115859 2866878..2868038 1 NC_008148.1 PFAM: peptidase M24; KEGG: nph:NP3076A aminopeptidase (high similarity to Xaa-Pro aminopeptidase); peptidase M24 2868038 4115859 Rxyl_2862 Rubrobacter xylanophilus DSM 9941 peptidase M24 YP_645586.1 2866878 D 266117 CDS YP_645587.1 108805650 4115860 2868055..2868378 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: ttj:TTHA0104 hypothetical protein; cupin 2 barrel domain-containing protein 2868378 4115860 Rxyl_2863 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_645587.1 2868055 D 266117 CDS YP_645588.1 108805651 4115861 complement(2868396..2868989) 1 NC_008148.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 2868989 4115861 Rxyl_2864 Rubrobacter xylanophilus DSM 9941 methionine sulfoxide reductase A YP_645588.1 2868396 R 266117 CDS YP_645589.1 108805652 4115862 2869004..2869438 1 NC_008148.1 hypothetical protein 2869438 4115862 Rxyl_2865 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645589.1 2869004 D 266117 CDS YP_645590.1 108805653 4115863 complement(2869435..2870826) 1 NC_008148.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2870826 fumC 4115863 fumC Rubrobacter xylanophilus DSM 9941 fumarate hydratase YP_645590.1 2869435 R 266117 CDS YP_645591.1 108805654 4115864 2870900..2871499 1 NC_008148.1 KEGG: ana:all2053 hypothetical protein; hypothetical protein 2871499 4115864 Rxyl_2867 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645591.1 2870900 D 266117 CDS YP_645592.1 108805655 4115865 2871659..2872114 1 NC_008148.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: tac:Ta1127 hypothetical protein; hypothetical protein 2872114 4115865 Rxyl_2868 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645592.1 2871659 D 266117 CDS YP_645593.1 108805656 4115866 2872162..2872725 1 NC_008148.1 PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: cef:CE1070 hypothetical protein; hypothetical protein 2872725 4115866 Rxyl_2869 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645593.1 2872162 D 266117 CDS YP_645594.1 108805657 4115867 complement(2872957..2873835) 1 NC_008148.1 PFAM: Rieske [2Fe-2S] region; KEGG: mpa:MAP2733c hypothetical protein; Rieske (2Fe-2S) domain-containing protein 2873835 4115867 Rxyl_2871 Rubrobacter xylanophilus DSM 9941 Rieske (2Fe-2S) domain-containing protein YP_645594.1 2872957 R 266117 CDS YP_645595.1 108805658 4115868 complement(2873901..2875082) 1 NC_008148.1 KEGG: nfa:nfa44660 hypothetical protein; hypothetical protein 2875082 4115868 Rxyl_2872 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645595.1 2873901 R 266117 CDS YP_645596.1 108805659 4115869 2875347..2876291 1 NC_008148.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gvi:gll1454 hypothetical protein; cation diffusion facilitator family transporter 2876291 4115869 Rxyl_2873 Rubrobacter xylanophilus DSM 9941 cation diffusion facilitator family transporter YP_645596.1 2875347 D 266117 CDS YP_645597.1 108805660 4115870 complement(2876359..2878602) 1 NC_008148.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2878602 4115870 Rxyl_2874 Rubrobacter xylanophilus DSM 9941 ribonucleotide-diphosphate reductase subunit alpha YP_645597.1 2876359 R 266117 CDS YP_645598.1 108805661 4115871 complement(2878677..2879147) 1 NC_008148.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; KEGG: tel:tlr1861 ATP-cone domain protein; transcriptional regulator NrdR 2879147 nrdR 4115871 nrdR Rubrobacter xylanophilus DSM 9941 transcriptional regulator NrdR YP_645598.1 2878677 R 266117 CDS YP_645599.1 108805662 4115872 complement(2879482..2879985) 1 NC_008148.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sco:SCO4038 deaminase; tRNA-adenosine deaminase 2879985 4115872 Rxyl_2876 Rubrobacter xylanophilus DSM 9941 tRNA-adenosine deaminase YP_645599.1 2879482 R 266117 CDS YP_645600.1 108805663 4115873 complement(2880003..2880446) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ade:Adeh_1022 tyrosine phosphatase; N-acetyltransferase GCN5 2880446 4115873 Rxyl_2877 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_645600.1 2880003 R 266117 CDS YP_645601.1 108805664 4115874 complement(2880439..2880858) 1 NC_008148.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: gme:Gmet_0521 protein tyrosine phosphatase; protein tyrosine phosphatase 2880858 4115874 Rxyl_2878 Rubrobacter xylanophilus DSM 9941 protein tyrosine phosphatase YP_645601.1 2880439 R 266117 CDS YP_645602.1 108805665 4115875 complement(2880855..2881187) 1 NC_008148.1 PFAM: regulatory protein, ArsR; KEGG: sco:SCO6812 ArsR-family transcriptional regulator; ArsR family transcriptional regulator 2881187 4115875 Rxyl_2879 Rubrobacter xylanophilus DSM 9941 ArsR family transcriptional regulator YP_645602.1 2880855 R 266117 CDS YP_645603.1 108805666 4115876 complement(2881177..2881917) 1 NC_008148.1 PFAM: putative RNA methylase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: rpa:RPA3562 UbiE/COQ5 methyltransferase; type 11 methyltransferase 2881917 4115876 Rxyl_2880 Rubrobacter xylanophilus DSM 9941 type 11 methyltransferase YP_645603.1 2881177 R 266117 CDS YP_645604.1 108805667 4117342 complement(2881996..2883402) 1 NC_008148.1 KEGG: rba:RB9828 conserved hypothetical protein-putative transmembrane Mn(2+) transporter; manganese transporter NRAMP 2883402 4117342 Rxyl_2881 Rubrobacter xylanophilus DSM 9941 manganese transporter NRAMP YP_645604.1 2881996 R 266117 CDS YP_645605.1 108805668 4117343 complement(2883560..2884789) 1 NC_008148.1 PFAM: argininosuccinate synthase; KEGG: syf:Synpcc7942_0009 argininosuccinate synthase; argininosuccinate synthase 2884789 4117343 Rxyl_2882 Rubrobacter xylanophilus DSM 9941 argininosuccinate synthase YP_645605.1 2883560 R 266117 CDS YP_645606.1 108805669 4117344 complement(2884803..2885207) 1 NC_008148.1 KEGG: dra:DR1715 hypothetical protein; hypothetical protein 2885207 4117344 Rxyl_2883 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645606.1 2884803 R 266117 CDS YP_645607.1 108805670 4117345 complement(2885224..2885703) 1 NC_008148.1 PFAM: arginine repressor; KEGG: sth:STH1836 transcriptional regulator; ArgR family transcriptional regulator 2885703 4117345 Rxyl_2884 Rubrobacter xylanophilus DSM 9941 ArgR family transcriptional regulator YP_645607.1 2885224 R 266117 CDS YP_645608.1 108805671 4117346 complement(2885714..2886736) 1 NC_008148.1 KEGG: pca:Pcar_1898 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD - binding Semialdehyde dehydrogenase, dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 2886736 4117346 Rxyl_2885 Rubrobacter xylanophilus DSM 9941 N-acetyl-gamma-glutamyl-phosphate reductase YP_645608.1 2885714 R 266117 CDS YP_645609.1 108805672 4117347 2886829..2888052 1 NC_008148.1 KEGG: sth:STH2890 putative amino-acid acetyltransferase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; glutamate N-acetyltransferase/N-acetylglutamate synthase 2888052 4117347 Rxyl_2886 Rubrobacter xylanophilus DSM 9941 glutamate N-acetyltransferase/N-acetylglutamate synthase YP_645609.1 2886829 D 266117 CDS YP_645610.1 108805673 4117348 2888049..2888810 1 NC_008148.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: gka:GK0792 acetylglutamate kinase; N-acetylglutamate kinase 2888810 4117348 Rxyl_2887 Rubrobacter xylanophilus DSM 9941 N-acetylglutamate kinase YP_645610.1 2888049 D 266117 CDS YP_645611.1 108805674 4117349 2888807..2890000 1 NC_008148.1 KEGG: mta:Moth_2287 acetylornithine and succinylornithine aminotransferases; TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; acetylornithine aminotransferase 2890000 4117349 Rxyl_2888 Rubrobacter xylanophilus DSM 9941 acetylornithine aminotransferase YP_645611.1 2888807 D 266117 CDS YP_645612.1 108805675 4117350 2889997..2890950 1 NC_008148.1 KEGG: tko:TK0871 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; ornithine carbamoyltransferase 2890950 4117350 Rxyl_2889 Rubrobacter xylanophilus DSM 9941 ornithine carbamoyltransferase YP_645612.1 2889997 D 266117 CDS YP_645613.1 108805676 4117351 complement(2891257..2892522) 1 NC_008148.1 TIGRFAM: Cysteine desulphurase related; PFAM: aminotransferase, class V; KEGG: ava:Ava_1826 cysteine desulphurase related; cysteine desulfurase-like protein 2892522 4117351 Rxyl_2890 Rubrobacter xylanophilus DSM 9941 cysteine desulfurase-like protein YP_645613.1 2891257 R 266117 CDS YP_645614.1 108805677 4117352 complement(2892545..2893978) 1 NC_008148.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sru:SRU_1355 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase 2893978 4117352 Rxyl_2891 Rubrobacter xylanophilus DSM 9941 o-succinylbenzoate--CoA ligase YP_645614.1 2892545 R 266117 CDS YP_645615.1 108805678 4117353 complement(2893971..2894948) 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sru:SRU_1354 O-succinylbenzoic acid (OSB) synthetase; mandelate racemase/muconate lactonizing-like protein 2894948 4117353 Rxyl_2892 Rubrobacter xylanophilus DSM 9941 mandelate racemase/muconate lactonizing-like protein YP_645615.1 2893971 R 266117 CDS YP_645616.1 108805679 4117354 complement(2895038..2895889) 1 NC_008148.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2895889 4117354 Rxyl_2893 Rubrobacter xylanophilus DSM 9941 naphthoate synthase YP_645616.1 2895038 R 266117 CDS YP_645617.1 108805680 4117355 complement(2895894..2896646) 1 NC_008148.1 PFAM: alpha/beta hydrolase fold; KEGG: gka:GK2874 hypothetical protein; alpha/beta hydrolase fold protein domain-containing protein 2896646 4117355 Rxyl_2894 Rubrobacter xylanophilus DSM 9941 alpha/beta hydrolase fold protein domain-containing protein YP_645617.1 2895894 R 266117 CDS YP_645618.1 108805681 4117356 complement(2896696..2897316) 1 NC_008148.1 PFAM: protein of unknown function DUF1211; KEGG: mhu:Mhun_1689 protein of unknown function DUF1211; hypothetical protein 2897316 4117356 Rxyl_2895 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645618.1 2896696 R 266117 CDS YP_645619.1 108805682 4117357 complement(2897368..2899092) 1 NC_008148.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate enzyme-like TPP binding region; KEGG: sru:SRU_1351 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 2899092 4117357 Rxyl_2896 Rubrobacter xylanophilus DSM 9941 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_645619.1 2897368 R 266117 CDS YP_645620.1 108805683 4117358 complement(2899067..2900488) 1 NC_008148.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: sru:SRU_1350 putative isochorismate synthase; isochorismate synthase 2900488 4117358 Rxyl_2897 Rubrobacter xylanophilus DSM 9941 isochorismate synthase YP_645620.1 2899067 R 266117 CDS YP_645621.1 108805684 4117359 complement(2900552..2901997) 1 NC_008148.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: sme:SMc02341 putative sugar kinase protein; xylulokinase 2901997 4117359 Rxyl_2898 Rubrobacter xylanophilus DSM 9941 xylulokinase YP_645621.1 2900552 R 266117 CDS YP_645622.1 108805685 4117360 complement(2902069..2902716) 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: cpe:CPE2315 sortase, putative; peptidase C60, sortase A and B 2902716 4117360 Rxyl_2899 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_645622.1 2902069 R 266117 CDS YP_645623.1 108805686 4117361 2902933..2903445 1 NC_008148.1 hypothetical protein 2903445 4117361 Rxyl_2900 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645623.1 2902933 D 266117 CDS YP_645624.1 108805687 4117381 2903499..2904125 1 NC_008148.1 PFAM: BioY protein; KEGG: mba:Mbar_A0586 biotin synthesis BioY protein; BioY protein 2904125 4117381 Rxyl_2901 Rubrobacter xylanophilus DSM 9941 BioY protein YP_645624.1 2903499 D 266117 CDS YP_645625.1 108805688 4117382 2904137..2904505 1 NC_008148.1 hypothetical protein 2904505 4117382 Rxyl_2902 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645625.1 2904137 D 266117 CDS YP_645626.1 108805689 4117383 complement(2904519..2905835) 1 NC_008148.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: tfu:Tfu_0690 bacterial 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 2905835 4117383 Rxyl_2903 Rubrobacter xylanophilus DSM 9941 4-aminobutyrate aminotransferase YP_645626.1 2904519 R 266117 CDS YP_645627.1 108805690 4117384 complement(2907287..2908771) 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: btk:BT9727_0295 succinate-semialdehyde dehydrogenase (NAD(P)+); succinate semialdehyde dehydrogenase 2908771 4117384 Rxyl_2905 Rubrobacter xylanophilus DSM 9941 succinate semialdehyde dehydrogenase YP_645627.1 2907287 R 266117 CDS YP_645628.1 108805691 4117385 complement(2909036..2910427) 1 NC_008148.1 PFAM: Na+/solute symporter; KEGG: pfl:PFL_0326 sodium-solute symporter, putative; Na+/solute symporter 2910427 4117385 Rxyl_2906 Rubrobacter xylanophilus DSM 9941 Na+/solute symporter YP_645628.1 2909036 R 266117 CDS YP_645629.1 108805692 4117386 complement(2910504..2911457) 1 NC_008148.1 TIGRFAM: agmatinase, putative; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: tfu:Tfu_0058 putative agmatinase; agmatinase 2911457 4117386 Rxyl_2907 Rubrobacter xylanophilus DSM 9941 agmatinase YP_645629.1 2910504 R 266117 CDS YP_645630.1 108805693 4117387 complement(2911632..2912756) 1 NC_008148.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT-like; KEGG: ttj:TTHA0216 alanine dehydrogenase; L-alanine dehydrogenase 2912756 4117387 Rxyl_2908 Rubrobacter xylanophilus DSM 9941 L-alanine dehydrogenase YP_645630.1 2911632 R 266117 CDS YP_645631.1 108805694 4117388 2912852..2913730 1 NC_008148.1 PFAM: regulatory protein, MerR helix-turn-helix motif Cupin 2, conserved barrel; KEGG: chy:CHY_0677 transcriptional regulator, MerR family; MerR family transcriptional regulator 2913730 4117388 Rxyl_2909 Rubrobacter xylanophilus DSM 9941 MerR family transcriptional regulator YP_645631.1 2912852 D 266117 CDS YP_645632.1 108805695 4117389 2913727..2915547 1 NC_008148.1 PFAM: peptidase S9, prolyl oligopeptidase active site region; KEGG: hma:rrnAC2119 hypothetical protein; peptidase S9, prolyl oligopeptidase active site region 2915547 4117389 Rxyl_2910 Rubrobacter xylanophilus DSM 9941 peptidase S9, prolyl oligopeptidase active site region YP_645632.1 2913727 D 266117 CDS YP_645633.1 108805696 4117390 2915615..2916979 1 NC_008148.1 PFAM: aminotransferase class-III; KEGG: sco:SCO5655 putative aminotransferase; hypothetical protein 2916979 4117390 Rxyl_2911 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645633.1 2915615 D 266117 CDS YP_645634.1 108805697 4117391 2917044..2918177 1 NC_008148.1 KEGG: sme:SMc00771 probable putrescine transport ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATP-binding subunit; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; spermidine/putrescine ABC transporter ATP-binding subunit 2918177 4117391 Rxyl_2912 Rubrobacter xylanophilus DSM 9941 spermidine/putrescine ABC transporter ATP-binding subunit YP_645634.1 2917044 D 266117 CDS YP_645635.1 108805698 4117392 2918174..2919265 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sth:STH468 spermidine/putrescine ABC transporter spermidine/putrescine-binding protein; extracellular solute-binding protein 2919265 4117392 Rxyl_2913 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_645635.1 2918174 D 266117 CDS YP_645636.1 108805699 4117393 2919297..2920133 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE1399 spermidine/putrescine ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 2920133 4117393 Rxyl_2914 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport systems inner membrane component YP_645636.1 2919297 D 266117 CDS YP_645637.1 108805700 4117394 2920135..2920938 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR1609 spermidine/putrescine ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 2920938 4117394 Rxyl_2915 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_645637.1 2920135 D 266117 CDS YP_645638.1 108805701 4117395 2920935..2921654 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: lmf:LMOf2365_1817 metallo-beta-lactamase family protein; beta-lactamase-like protein 2921654 4117395 Rxyl_2916 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_645638.1 2920935 D 266117 CDS YP_645639.1 108805702 4117396 2921688..2923127 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: sco:SCO5657 aldehyde dehydrogenase; aldehyde dehydrogenase 2923127 4117396 Rxyl_2917 Rubrobacter xylanophilus DSM 9941 aldehyde dehydrogenase YP_645639.1 2921688 D 266117 CDS YP_645640.1 108805703 4117397 2923181..2924416 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: deh:cbdb_A973 major facilitator family transporter; major facilitator transporter 2924416 4117397 Rxyl_2918 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645640.1 2923181 D 266117 CDS YP_645641.1 108805704 4117398 complement(2924403..2926148) 1 NC_008148.1 PFAM: GAF Stage II sporulation E PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif Protein phosphatase 2C-like; KEGG: tfu:Tfu_0287 protein phosphatase 2C-like, withe GAF domain; putative PAS/PAC sensor protein 2926148 4117398 Rxyl_2919 Rubrobacter xylanophilus DSM 9941 putative PAS/PAC sensor protein YP_645641.1 2924403 R 266117 CDS YP_645642.1 108805705 4117399 2926246..2926878 1 NC_008148.1 PFAM: manganese and iron superoxide dismutase; KEGG: gka:GK2457 manganese superoxide dismutase; superoxide dismutase 2926878 4117399 Rxyl_2920 Rubrobacter xylanophilus DSM 9941 superoxide dismutase YP_645642.1 2926246 D 266117 CDS YP_645643.1 108805706 4115877 2926964..2928322 1 NC_008148.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2928322 4115877 Rxyl_2921 Rubrobacter xylanophilus DSM 9941 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_645643.1 2926964 D 266117 CDS YP_645644.1 108805707 4115878 complement(2928446..2930011) 1 NC_008148.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase 2930011 4115878 Rxyl_2922 Rubrobacter xylanophilus DSM 9941 1-pyrroline-5-carboxylate dehydrogenase YP_645644.1 2928446 R 266117 CDS YP_645645.1 108805708 4115879 complement(2930015..2930935) 1 NC_008148.1 PFAM: Proline dehydrogenase; KEGG: dps:DP2492 similar to proline dehydrogenase; L-proline dehydrogenase 2930935 4115879 Rxyl_2923 Rubrobacter xylanophilus DSM 9941 L-proline dehydrogenase YP_645645.1 2930015 R 266117 CDS YP_645646.1 108805709 4115880 complement(2930972..2932393) 1 NC_008148.1 PFAM: amino acid permease-associated region; KEGG: sco:SCO0938 putative amino acid transporter protein; amino acid permease-associated protein 2932393 4115880 Rxyl_2924 Rubrobacter xylanophilus DSM 9941 amino acid permease-associated protein YP_645646.1 2930972 R 266117 CDS YP_645647.1 108805710 4115881 2932527..2934119 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: fra:Francci3_2872 aldehyde dehydrogenase; delta-1-piperideine-6-carboxylate dehydrogenase 2934119 4115881 Rxyl_2925 Rubrobacter xylanophilus DSM 9941 delta-1-piperideine-6-carboxylate dehydrogenase YP_645647.1 2932527 D 266117 CDS YP_645648.1 108805711 4115882 2934126..2935253 1 NC_008148.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 2935253 solA 4115882 solA Rubrobacter xylanophilus DSM 9941 N-methyltryptophan oxidase YP_645648.1 2934126 D 266117 CDS YP_645649.1 108805712 4115883 2935250..2936167 1 NC_008148.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2936167 4115883 Rxyl_2927 Rubrobacter xylanophilus DSM 9941 ornithine cyclodeaminase YP_645649.1 2935250 D 266117 CDS YP_645650.1 108805713 4115884 2936243..2936635 1 NC_008148.1 PFAM: regulatory protein, ArsR transcriptional regulator TrmB; KEGG: sto:ST1076 hypothetical transcriptional regulator; transcriptional regulator, TrmB 2936635 4115884 Rxyl_2928 Rubrobacter xylanophilus DSM 9941 transcriptional regulator, TrmB YP_645650.1 2936243 D 266117 CDS YP_645651.1 108805714 4115885 2936718..2937812 1 NC_008148.1 KEGG: tth:TTC1121 hypothetical protein; hypothetical protein 2937812 4115885 Rxyl_2929 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645651.1 2936718 D 266117 CDS YP_645652.1 108805715 4115886 2937954..2939315 1 NC_008148.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: pfu:PF1670 alkaline serine protease; peptidase S8/S53 subtilisin kexin sedolisin 2939315 4115886 Rxyl_2930 Rubrobacter xylanophilus DSM 9941 peptidase S8/S53 subtilisin kexin sedolisin YP_645652.1 2937954 D 266117 CDS YP_645653.1 108805716 4115887 2939334..2940050 1 NC_008148.1 hypothetical protein 2940050 4115887 Rxyl_2931 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645653.1 2939334 D 266117 CDS YP_645654.1 108805717 4115888 complement(2940019..2940531) 1 NC_008148.1 PFAM: Phosphoglycerate mutase; KEGG: tth:TTC0635 hypothetical protein; phosphohistidine phosphatase SixA 2940531 4115888 Rxyl_2932 Rubrobacter xylanophilus DSM 9941 phosphohistidine phosphatase SixA YP_645654.1 2940019 R 266117 CDS YP_645655.1 108805718 4115889 complement(2940536..2942098) 1 NC_008148.1 PFAM: CHAD adenylate cyclase; KEGG: mag:amb1972 hypothetical protein; CHAD domain-containing protein 2942098 4115889 Rxyl_2933 Rubrobacter xylanophilus DSM 9941 CHAD domain-containing protein YP_645655.1 2940536 R 266117 CDS YP_645656.1 108805719 4115890 2942185..2942907 1 NC_008148.1 PFAM: MgtC/SapB transporter; KEGG: chy:CHY_1773 MgtC family protein; MgtC/SapB transporter 2942907 4115890 Rxyl_2934 Rubrobacter xylanophilus DSM 9941 MgtC/SapB transporter YP_645656.1 2942185 D 266117 CDS YP_645657.1 108805720 4115891 complement(2942882..2944990) 1 NC_008148.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2944990 4115891 Rxyl_2935 Rubrobacter xylanophilus DSM 9941 polyphosphate kinase YP_645657.1 2942882 R 266117 CDS YP_645658.1 108805721 4115892 2945201..2945530 1 NC_008148.1 KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; hypothetical protein 2945530 4115892 Rxyl_2936 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645658.1 2945201 D 266117 CDS YP_645659.1 108805722 4115893 complement(2945552..2946139) 1 NC_008148.1 PFAM: peptidase C60, sortase A and B; KEGG: tfu:Tfu_2383 peptidase C60, sortase A and B; peptidase C60, sortase A and B 2946139 4115893 Rxyl_2937 Rubrobacter xylanophilus DSM 9941 peptidase C60, sortase A and B YP_645659.1 2945552 R 266117 CDS YP_645660.1 108805723 4115894 2946297..2947592 1 NC_008148.1 PFAM: alanine dehydrogenase/PNT-like; KEGG: ana:all3410 nicotinamide nucleotide transhydrogenase, subunit alpha; NAD(P)(+) transhydrogenase 2947592 4115894 Rxyl_2938 Rubrobacter xylanophilus DSM 9941 NAD(P)(+) transhydrogenase YP_645660.1 2946297 D 266117 CDS YP_645661.1 108805724 4115895 2947594..2947899 1 NC_008148.1 KEGG: mle:ML2635 pyridine transhydrogenase subunit [alpha]2; pyridine transhydrogenase subunit alpha 2947899 4115895 Rxyl_2939 Rubrobacter xylanophilus DSM 9941 pyridine transhydrogenase subunit alpha YP_645661.1 2947594 D 266117 CDS YP_645662.1 108805725 4115896 2947905..2949311 1 NC_008148.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: ana:all3408 nicotinamide nucleotide transhydrogenase, subunit beta; NAD(P) transhydrogenase subunit beta 2949311 4115896 Rxyl_2940 Rubrobacter xylanophilus DSM 9941 NAD(P) transhydrogenase subunit beta YP_645662.1 2947905 D 266117 CDS YP_645663.1 108805726 4115936 2949367..2950035 1 NC_008148.1 PFAM: Rhodanese-like regulatory protein, ArsR; KEGG: tbd:Tbd_2736 rhodanese-like protein; ArsR family transcriptional regulator 2950035 4115936 Rxyl_2941 Rubrobacter xylanophilus DSM 9941 ArsR family transcriptional regulator YP_645663.1 2949367 D 266117 CDS YP_645664.1 108805727 4115937 2950051..2951160 1 NC_008148.1 SMART: Rhodanese-like; KEGG: hal:VNG7160 hypothetical protein; rhodanese-like protein 2951160 4115937 Rxyl_2942 Rubrobacter xylanophilus DSM 9941 rhodanese-like protein YP_645664.1 2950051 D 266117 CDS YP_645665.1 108805728 4115938 2951170..2952426 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2904 major facilitator superfamily (MFS_1) transporter; major facilitator transporter 2952426 4115938 Rxyl_2943 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645665.1 2951170 D 266117 CDS YP_645666.1 108805729 4115939 complement(2952446..2953756) 1 NC_008148.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: rso:RS03119 putative transmembrane protein; monooxygenase 2953756 4115939 Rxyl_2944 Rubrobacter xylanophilus DSM 9941 monooxygenase YP_645666.1 2952446 R 266117 CDS YP_645667.1 108805730 4115940 complement(2953766..2954047) 1 NC_008148.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 2954047 4115940 Rxyl_2945 Rubrobacter xylanophilus DSM 9941 antibiotic biosynthesis monooxygenase YP_645667.1 2953766 R 266117 CDS YP_645668.1 108805731 4115941 complement(2954200..2956545) 1 NC_008148.1 PFAM: regulatory protein, LuxR Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; KEGG: fra:Francci3_0992 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2956545 4115941 Rxyl_2946 Rubrobacter xylanophilus DSM 9941 LuxR family transcriptional regulator YP_645668.1 2954200 R 266117 CDS YP_645669.1 108805732 4115942 complement(2956664..2957593) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: tth:TTC0458 metallo-beta-lactamase protein; beta-lactamase-like protein 2957593 4115942 Rxyl_2947 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_645669.1 2956664 R 266117 CDS YP_645670.1 108805733 4115943 2957716..2958927 1 NC_008148.1 catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM; cofactor-independent phosphoglycerate mutase 2958927 4115943 Rxyl_2948 Rubrobacter xylanophilus DSM 9941 cofactor-independent phosphoglycerate mutase YP_645670.1 2957716 D 266117 CDS YP_645671.1 108805734 4115944 2958896..2959582 1 NC_008148.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: ade:Adeh_3631 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily protein 2959582 4115944 Rxyl_2949 Rubrobacter xylanophilus DSM 9941 uracil-DNA glycosylase superfamily protein YP_645671.1 2958896 D 266117 CDS YP_645672.1 108805735 4115945 2959588..2960109 1 NC_008148.1 hypothetical protein 2960109 4115945 Rxyl_2950 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645672.1 2959588 D 266117 CDS YP_645673.1 108805736 4115946 2960202..2960771 1 NC_008148.1 TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: ttj:TTHA1791 putative hydrolase (HD domain); metal dependent phosphohydrolase 2960771 4115946 Rxyl_2951 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_645673.1 2960202 D 266117 CDS YP_645674.1 108805737 4115947 2960777..2961832 1 NC_008148.1 KEGG: sth:STH512 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase-like, ATP-grasp D-alanine--D-alanine ligase-like; D-alanine--D-alanine ligase 2961832 4115947 Rxyl_2952 Rubrobacter xylanophilus DSM 9941 D-alanine--D-alanine ligase YP_645674.1 2960777 D 266117 CDS YP_645675.1 108805738 4115948 2961832..2962827 1 NC_008148.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mta:Moth_0082 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 2962827 4115948 Rxyl_2953 Rubrobacter xylanophilus DSM 9941 mechanosensitive ion channel MscS YP_645675.1 2961832 D 266117 CDS YP_645676.1 108805739 4115949 complement(2962824..2963477) 1 NC_008148.1 PFAM: peptidase S16, lon-like; KEGG: sru:SRU_1204 ATP-dependent protease La domain protein; peptidase S16, lon-like protein 2963477 4115949 Rxyl_2954 Rubrobacter xylanophilus DSM 9941 peptidase S16, lon-like protein YP_645676.1 2962824 R 266117 CDS YP_645677.1 108805740 4115950 complement(2963740..2965071) 1 NC_008148.1 KEGG: tvo:TVN0083 cytochrome bd-I oxidase subunit I; cytochrome bd-type quinol oxidase subunit 1-like protein 2965071 4115950 Rxyl_2955 Rubrobacter xylanophilus DSM 9941 cytochrome bd-type quinol oxidase subunit 1-like protein YP_645677.1 2963740 R 266117 CDS YP_645678.1 108805741 4115951 complement(2965084..2965617) 1 NC_008148.1 KEGG: bld:BLi02389 menaquinolcytochrome c oxidoreductase (cytochrome b/c subunit); RBL03466; cytochromesubunit B of the bc complex-like protein 2965617 4115951 Rxyl_2956 Rubrobacter xylanophilus DSM 9941 cytochromesubunit B of the bc complex-like protein YP_645678.1 2965084 R 266117 CDS YP_645679.1 108805742 4115952 complement(2965692..2966465) 1 NC_008148.1 PFAM: cytochrome b/b6-like; KEGG: btk:BT9727_1405 menaquinol-cytochrome c reductase, cytochrome b subunit; cytochrome b/b6-like protein 2966465 4115952 Rxyl_2957 Rubrobacter xylanophilus DSM 9941 cytochrome b/b6-like protein YP_645679.1 2965692 R 266117 CDS YP_645680.1 108805743 4115953 complement(2966482..2967153) 1 NC_008148.1 PFAM: Rieske [2Fe-2S] region; KEGG: gme:Gmet_1922 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 2967153 4115953 Rxyl_2958 Rubrobacter xylanophilus DSM 9941 Rieske (2Fe-2S) domain-containing protein YP_645680.1 2966482 R 266117 CDS YP_645681.1 108805744 4115954 complement(2967245..2968597) 1 NC_008148.1 KEGG: sao:SAOUHSC_01031 cytochrome d ubiquinol oxidase, subunit I, putative; hypothetical protein 2968597 4115954 Rxyl_2959 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645681.1 2967245 R 266117 CDS YP_645682.1 108805745 4115682 complement(2968611..2969252) 1 NC_008148.1 hypothetical protein 2969252 4115682 Rxyl_2960 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645682.1 2968611 R 266117 CDS YP_645683.1 108805746 4115683 2969427..2970116 1 NC_008148.1 hypothetical protein 2970116 4115683 Rxyl_2961 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645683.1 2969427 D 266117 CDS YP_645684.1 108805747 4115684 2970197..2971555 1 NC_008148.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: oih:OB0723 hypothetical protein; xanthine/uracil/vitamin C permease 2971555 4115684 Rxyl_2962 Rubrobacter xylanophilus DSM 9941 xanthine/uracil/vitamin C permease YP_645684.1 2970197 D 266117 CDS YP_645685.1 108805748 4115685 2971691..2971960 1 NC_008148.1 PFAM: Transglycosylase-associated protein; KEGG: sdy:SDY_1695 hypothetical protein; transglycosylase-associated protein 2971960 4115685 Rxyl_2963 Rubrobacter xylanophilus DSM 9941 transglycosylase-associated protein YP_645685.1 2971691 D 266117 CDS YP_645686.1 108805749 4115686 2972031..2972498 1 NC_008148.1 PFAM: protein of unknown function DUF322; KEGG: fra:Francci3_3957 protein of unknown function DUF322; hypothetical protein 2972498 4115686 Rxyl_2964 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645686.1 2972031 D 266117 CDS YP_645687.1 108805750 4115687 2972514..2972807 1 NC_008148.1 hypothetical protein 2972807 4115687 Rxyl_2965 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645687.1 2972514 D 266117 CDS YP_645688.1 108805751 4115688 2972804..2973382 1 NC_008148.1 hypothetical protein 2973382 4115688 Rxyl_2966 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645688.1 2972804 D 266117 CDS YP_645689.1 108805752 4115689 2973379..2973942 1 NC_008148.1 hypothetical protein 2973942 4115689 Rxyl_2967 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645689.1 2973379 D 266117 CDS YP_645690.1 108805753 4115690 2973964..2974161 1 NC_008148.1 hypothetical protein 2974161 4115690 Rxyl_2968 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645690.1 2973964 D 266117 CDS YP_645691.1 108805754 4115691 2974174..2974671 1 NC_008148.1 KEGG: atc:AGR_L_206 hypothetical protein; hypothetical protein 2974671 4115691 Rxyl_2969 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645691.1 2974174 D 266117 CDS YP_645692.1 108805755 4115692 2974729..2975547 1 NC_008148.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: gka:GK1581 D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 2975547 4115692 Rxyl_2970 Rubrobacter xylanophilus DSM 9941 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_645692.1 2974729 D 266117 CDS YP_645693.1 108805756 4115693 2975540..2976325 1 NC_008148.1 TIGRFAM: HAD-superfamily hydrolase subfamily IIB; PFAM: trehalose-phosphatase sucrose-6F-phosphate phosphohydrolase; KEGG: mth:MTH1760 trehalose-6-phosphate phophatase related protein; HAD family hydrolase 2976325 4115693 Rxyl_2971 Rubrobacter xylanophilus DSM 9941 HAD family hydrolase YP_645693.1 2975540 D 266117 CDS YP_645694.1 108805757 4115694 complement(2976322..2977776) 1 NC_008148.1 PFAM: glycosyl transferase, family 20; KEGG: fra:Francci3_1478 alpha,alpha-trehalose-phosphate synthase (UDP-forming); alpha,alpha-trehalose-phosphate synthase 2977776 4115694 Rxyl_2972 Rubrobacter xylanophilus DSM 9941 alpha,alpha-trehalose-phosphate synthase YP_645694.1 2976322 R 266117 CDS YP_645695.1 108805758 4115695 complement(2977814..2979064) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: pho:PH1035 hypothetical protein; group 1 glycosyl transferase 2979064 4115695 Rxyl_2973 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_645695.1 2977814 R 266117 CDS YP_645696.1 108805759 4115696 complement(2979169..2979624) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like; KEGG: oih:OB0629 negative regulator of sigma-B activity (switch protein/serine kinase, anti-sigma factor); putative anti-sigma regulatory factor 2979624 4115696 Rxyl_2974 Rubrobacter xylanophilus DSM 9941 putative anti-sigma regulatory factor YP_645696.1 2979169 R 266117 CDS YP_645697.1 108805760 4115697 complement(2979729..2980565) 1 NC_008148.1 PFAM: band 7 protein; KEGG: chy:CHY_0857 SPFH domain / Band 7 family protein; hypothetical protein 2980565 4115697 Rxyl_2975 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645697.1 2979729 R 266117 CDS YP_645698.1 108805761 4115698 complement(2980712..2982283) 1 NC_008148.1 PFAM: NLP/P60; KEGG: cgb:cg1735 secreted cell wall-associated hydrolase (invasion-associated protein); PgdS peptidase 2982283 4115698 Rxyl_2976 Rubrobacter xylanophilus DSM 9941 PgdS peptidase YP_645698.1 2980712 R 266117 CDS YP_645699.1 108805762 4115699 complement(2982515..2983021) 1 NC_008148.1 hypothetical protein 2983021 4115699 Rxyl_2977 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645699.1 2982515 R 266117 CDS YP_645700.1 108805763 4115700 complement(2983014..2983619) 1 NC_008148.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: deh:cbdb_A940 CDP-alcohol phosphatidyltransferase family protein; CDP-alcohol phosphatidyltransferase 2983619 4115700 Rxyl_2978 Rubrobacter xylanophilus DSM 9941 CDP-alcohol phosphatidyltransferase YP_645700.1 2983014 R 266117 CDS YP_645701.1 108805764 4115701 complement(2983616..2984779) 1 NC_008148.1 PFAM: protein of unknown function UPF0118; KEGG: sth:STH2385 hypothetical protein; hypothetical protein 2984779 4115701 Rxyl_2979 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645701.1 2983616 R 266117 CDS YP_645702.1 108805765 4115702 2984859..2985695 1 NC_008148.1 KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein 2985695 4115702 Rxyl_2980 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645702.1 2984859 D 266117 CDS YP_645703.1 108805766 4115703 2985727..2986374 1 NC_008148.1 PFAM: peptidase M50; KEGG: lin:lin2708 hypothetical protein; peptidase M50 2986374 4115703 Rxyl_2981 Rubrobacter xylanophilus DSM 9941 peptidase M50 YP_645703.1 2985727 D 266117 CDS YP_645704.1 108805767 4115704 complement(2986496..2988322) 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold-4; SMART: PAS; KEGG: tte:TTE2688 sensory transduction histidine kinases; multi-sensor signal transduction histidine kinase 2988322 4115704 Rxyl_2982 Rubrobacter xylanophilus DSM 9941 multi-sensor signal transduction histidine kinase YP_645704.1 2986496 R 266117 CDS YP_645705.1 108805768 4115705 complement(2988309..2988995) 1 NC_008148.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mta:Moth_0070 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2988995 4115705 Rxyl_2983 Rubrobacter xylanophilus DSM 9941 two component transcriptional regulator YP_645705.1 2988309 R 266117 CDS YP_645706.1 108805769 4115706 complement(2989056..2990738) 1 NC_008148.1 contains 3'-5'exonuclease domain; hypothetical protein 2990738 4115706 Rxyl_2984 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645706.1 2989056 R 266117 CDS YP_645707.1 108805770 4115707 complement(2990839..2991891) 1 NC_008148.1 SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix DNA-binding protein 2991891 4115707 Rxyl_2985 Rubrobacter xylanophilus DSM 9941 helix-hairpin-helix DNA-binding protein YP_645707.1 2990839 R 266117 CDS YP_645708.1 108805771 4115708 complement(2991885..2993114) 1 NC_008148.1 PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: gme:Gmet_1038 molybdopterin biosynthesis protein MoeA; molybdopterin molybdochelatase 2993114 4115708 Rxyl_2986 Rubrobacter xylanophilus DSM 9941 molybdopterin molybdochelatase YP_645708.1 2991885 R 266117 CDS YP_645709.1 108805772 4115709 complement(2993181..2994446) 1 NC_008148.1 KEGG: gka:GK1970 hypothetical protein; hypothetical protein 2994446 4115709 Rxyl_2987 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645709.1 2993181 R 266117 CDS YP_645710.1 108805773 4115710 complement(2994453..2995472) 1 NC_008148.1 KEGG: chy:CHY_1259 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 2995472 4115710 Rxyl_2988 Rubrobacter xylanophilus DSM 9941 4-hydroxythreonine-4-phosphate dehydrogenase YP_645710.1 2994453 R 266117 CDS YP_645711.1 108805774 4115711 complement(2995469..2996641) 1 NC_008148.1 KEGG: dde:Dde_0128 hypothetical protein; hypothetical protein 2996641 4115711 Rxyl_2989 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645711.1 2995469 R 266117 CDS YP_645712.1 108805775 4115712 2996750..2997667 1 NC_008148.1 PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein; 3-keto-5-aminohexanoate cleavage protein 2997667 4115712 Rxyl_2990 Rubrobacter xylanophilus DSM 9941 3-keto-5-aminohexanoate cleavage protein YP_645712.1 2996750 D 266117 CDS YP_645713.1 108805776 4115713 2997678..2998691 1 NC_008148.1 KEGG: pfl:PFL_3476 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE-like; 2-dehydropantoate 2-reductase 2998691 4115713 Rxyl_2991 Rubrobacter xylanophilus DSM 9941 2-dehydropantoate 2-reductase YP_645713.1 2997678 D 266117 CDS YP_645714.1 108805777 4115714 2998773..3000236 1 NC_008148.1 KEGG: hma:pNG7286 hypothetical protein; hypothetical protein 3000236 4115714 Rxyl_2992 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645714.1 2998773 D 266117 CDS YP_645715.1 108805778 4115715 complement(3000369..3001034) 1 NC_008148.1 PFAM: protein of unknown function DUF162; KEGG: sth:STH93 hypothetical protein; hypothetical protein 3001034 4115715 Rxyl_2993 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645715.1 3000369 R 266117 CDS YP_645716.1 108805779 4115716 complement(3001031..3002500) 1 NC_008148.1 TIGRFAM: Iron-sulfur cluster binding protein; KEGG: bat:BAS3036 iron-sulfur cluster-binding protein; Iron-sulfur cluster binding protein 3002500 4115716 Rxyl_2994 Rubrobacter xylanophilus DSM 9941 Iron-sulfur cluster binding protein YP_645716.1 3001031 R 266117 CDS YP_645717.1 108805780 4115717 complement(3002493..3003233) 1 NC_008148.1 PFAM: protein of unknown function DUF224, cysteine-rich region; KEGG: sth:STH95 glycolate oxidase; hypothetical protein 3003233 4115717 Rxyl_2995 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645717.1 3002493 R 266117 CDS YP_645718.1 108805781 4115718 3003318..3004031 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1116 transcriptional regulator, TetR family; TetR family transcriptional regulator 3004031 4115718 Rxyl_2996 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_645718.1 3003318 D 266117 CDS YP_645719.1 108805782 4115719 3004028..3005434 1 NC_008148.1 KEGG: pca:Pcar_1703 coenzyme F390 synthetase-like; coenzyme F390 synthetase-like protein 3005434 4115719 Rxyl_2997 Rubrobacter xylanophilus DSM 9941 coenzyme F390 synthetase-like protein YP_645719.1 3004028 D 266117 CDS YP_645720.1 108805783 4115720 3005521..3006798 1 NC_008148.1 KEGG: gka:GK1970 hypothetical protein; hypothetical protein 3006798 4115720 Rxyl_2998 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645720.1 3005521 D 266117 CDS YP_645721.1 108805784 4115798 complement(3006795..3007895) 1 NC_008148.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase ferredoxin-dependent glutamate synthase; KEGG: ava:Ava_1430 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 3007895 4115798 Rxyl_2999 Rubrobacter xylanophilus DSM 9941 FMN-dependent alpha-hydroxy acid dehydrogenase YP_645721.1 3006795 R 266117 CDS YP_645722.1 108805785 4115799 complement(3007882..3008607) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcl:ABC3762 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 3008607 4115799 Rxyl_3000 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645722.1 3007882 R 266117 CDS YP_645723.1 108805786 4115800 complement(3008682..3009713) 1 NC_008148.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00907 D-ribose-binding periplasmic protein; periplasmic binding protein/LacI transcriptional regulator 3009713 4115800 Rxyl_3001 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein/LacI transcriptional regulator YP_645723.1 3008682 R 266117 CDS YP_645724.1 108805787 4115801 complement(3009737..3010747) 1 NC_008148.1 PFAM: inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; inner-membrane translocator 3010747 4115801 Rxyl_3002 Rubrobacter xylanophilus DSM 9941 inner-membrane translocator YP_645724.1 3009737 R 266117 CDS YP_645725.1 108805788 4115802 complement(3010744..3012231) 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_C_5112 ABC transporter protein, ATP binding component; ABC transporter-like protein 3012231 4115802 Rxyl_3003 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645725.1 3010744 R 266117 CDS YP_645726.1 108805789 4115803 complement(3012365..3013057) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sma:SAV6651 putative GntR-family transcriptional regulator; GntR family transcriptional regulator 3013057 4115803 Rxyl_3004 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_645726.1 3012365 R 266117 CDS YP_645727.1 108805790 4115804 3013191..3014351 1 NC_008148.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bmb:BruAb1_0230 sugar ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein 3014351 4115804 Rxyl_3005 Rubrobacter xylanophilus DSM 9941 extracellular solute-binding protein YP_645727.1 3013191 D 266117 CDS YP_645728.1 108805791 4115805 3014348..3015307 1 NC_008148.1 PFAM: aldo/keto reductase; KEGG: sco:SCO7162 oxidoreductase; aldo/keto reductase 3015307 4115805 Rxyl_3006 Rubrobacter xylanophilus DSM 9941 aldo/keto reductase YP_645728.1 3014348 D 266117 CDS YP_645729.1 108805792 4115806 complement(3015297..3016055) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mta:Moth_0426 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3016055 4115806 Rxyl_3007 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645729.1 3015297 R 266117 CDS YP_645730.1 108805793 4115807 complement(3016090..3017343) 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: hal:VNG0442G RspA; mandelate racemase/muconate lactonizing-like protein 3017343 4115807 Rxyl_3008 Rubrobacter xylanophilus DSM 9941 mandelate racemase/muconate lactonizing-like protein YP_645730.1 3016090 R 266117 CDS YP_645731.1 108805794 4115808 complement(3017345..3018127) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rba:RB2242 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 3018127 4115808 Rxyl_3009 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645731.1 3017345 R 266117 CDS YP_645732.1 108805795 4115809 complement(3018127..3019152) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sil:SPO0596 sorbitol dehydrogenase, putative; alcohol dehydrogenase GroES-like protein 3019152 4115809 Rxyl_3010 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_645732.1 3018127 R 266117 CDS YP_645733.1 108805796 4115810 3019351..3020106 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1748 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3020106 4115810 Rxyl_3011 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645733.1 3019351 D 266117 CDS YP_645734.1 108805797 4115811 3020103..3021410 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: jan:Jann_2104 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing-like protein 3021410 4115811 Rxyl_3012 Rubrobacter xylanophilus DSM 9941 mandelate racemase/muconate lactonizing-like protein YP_645734.1 3020103 D 266117 CDS YP_645735.1 108805798 4115812 3021407..3022117 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_B4725 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3022117 4115812 Rxyl_3013 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645735.1 3021407 D 266117 CDS YP_645736.1 108805799 4115813 3022195..3022623 1 NC_008148.1 hypothetical protein 3022623 4115813 Rxyl_3014 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645736.1 3022195 D 266117 CDS YP_645737.1 108805800 4115814 complement(3022620..3023369) 1 NC_008148.1 PFAM: CobB/CobQ-like glutamine amidotransferase; KEGG: tte:TTE0007 predicted glutamine amidotransferase; CobB/CobQ-like glutamine amidotransferase 3023369 4115814 Rxyl_3015 Rubrobacter xylanophilus DSM 9941 CobB/CobQ-like glutamine amidotransferase YP_645737.1 3022620 R 266117 CDS YP_645738.1 108805801 4115815 complement(3023366..3024676) 1 NC_008148.1 PFAM: Mur ligase, middle region Domain of unknown function DUF1727; KEGG: sth:STH1066 UDP-N-acetylmuramyl tripeptide synthase; hypothetical protein 3024676 4115815 Rxyl_3016 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645738.1 3023366 R 266117 CDS YP_645739.1 108805802 4115816 3024867..3025544 1 NC_008148.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: dra:DR0743 response regulator; two component transcriptional regulator 3025544 4115816 Rxyl_3017 Rubrobacter xylanophilus DSM 9941 two component transcriptional regulator YP_645739.1 3024867 D 266117 CDS YP_645740.1 108805803 4115817 3025546..3026961 1 NC_008148.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mta:Moth_1130 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase 3026961 4115817 Rxyl_3018 Rubrobacter xylanophilus DSM 9941 periplasmic sensor signal transduction histidine kinase YP_645740.1 3025546 D 266117 CDS YP_645741.1 108805804 4115955 3027050..3027670 1 NC_008148.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: sco:SCO5402 Asp-rich hydrophilic protein (putative membrane protein); peptidase 3027670 4115955 Rxyl_3019 Rubrobacter xylanophilus DSM 9941 peptidase YP_645741.1 3027050 D 266117 CDS YP_645742.1 108805805 4115956 3027711..3028685 1 NC_008148.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: pca:Pcar_0175 serine protease; peptidase S1 and S6, chymotrypsin/Hap 3028685 4115956 Rxyl_3020 Rubrobacter xylanophilus DSM 9941 peptidase S1 and S6, chymotrypsin/Hap YP_645742.1 3027711 D 266117 CDS YP_645743.1 108805806 4115957 3028691..3028936 1 NC_008148.1 hypothetical protein 3028936 4115957 Rxyl_3021 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645743.1 3028691 D 266117 CDS YP_645744.1 108805807 4115958 complement(3028929..3029630) 1 NC_008148.1 PFAM: Integral membrane protein TerC; KEGG: nmu:Nmul_A2473 integral membrane protein TerC; integral membrane protein TerC 3029630 4115958 Rxyl_3022 Rubrobacter xylanophilus DSM 9941 integral membrane protein TerC YP_645744.1 3028929 R 266117 CDS YP_645745.1 108805808 4115959 complement(3029834..3031024) 1 NC_008148.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: mlo:mlr7936 diaminopropionate ammonia-lyase; pyridoxal-5'-phosphate-dependent enzyme subunit beta 3031024 4115959 Rxyl_3023 Rubrobacter xylanophilus DSM 9941 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_645745.1 3029834 R 266117 CDS YP_645746.1 108805809 4115960 complement(3031075..3032115) 1 NC_008148.1 KEGG: sma:SAV2765 putative ABC transporter ATP-binding protein; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 3032115 4115960 Rxyl_3024 Rubrobacter xylanophilus DSM 9941 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_645746.1 3031075 R 266117 CDS YP_645747.1 108805810 4115961 complement(3032112..3033164) 1 NC_008148.1 KEGG: sma:SAV3173 putative ABC transporter intracellular ATPase subunit; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein 3033164 4115961 Rxyl_3025 Rubrobacter xylanophilus DSM 9941 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein YP_645747.1 3032112 R 266117 CDS YP_645748.1 108805811 4115962 complement(3033161..3034165) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tth:TTC0972 dipeptide transport system permease protein dppB; binding-protein-dependent transport system inner membrane protein 3034165 4115962 Rxyl_3026 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_645748.1 3033161 R 266117 CDS YP_645749.1 108805812 4115963 complement(3034169..3034960) 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00011 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; binding-protein-dependent transport systems inner membrane component 3034960 4115963 Rxyl_3027 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport systems inner membrane component YP_645749.1 3034169 R 266117 CDS YP_645750.1 108805813 4115964 complement(3035094..3036782) 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: bld:BLi00894 putative oligopeptide ABC transporter (binding protein) (initiation of sporulation, competence development); RBL02204; twin-arginine translocation pathway signal protein 3036782 4115964 Rxyl_3028 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_645750.1 3035094 R 266117 CDS YP_645751.1 108805814 4115965 complement(3036923..3038053) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_2994 putative transport protein; major facilitator transporter 3038053 4115965 Rxyl_3029 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645751.1 3036923 R 266117 CDS YP_645752.1 108805815 4115966 complement(3038127..3038666) 1 NC_008148.1 PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase; carbohydrate kinase 3038666 4115966 Rxyl_3030 Rubrobacter xylanophilus DSM 9941 carbohydrate kinase YP_645752.1 3038127 R 266117 CDS YP_645753.1 108805816 4115967 3040211..3041257 1 NC_008148.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rru:Rru_A2511 putative diguanylate cyclase (GGDEF domain); twin-arginine translocation pathway signal protein 3041257 4115967 Rxyl_3032 Rubrobacter xylanophilus DSM 9941 twin-arginine translocation pathway signal protein YP_645753.1 3040211 D 266117 CDS YP_645754.1 108805817 4115968 3041275..3042015 1 NC_008148.1 PFAM: amidohydrolase 2; KEGG: pab:PAB0058 hypothetical protein; amidohydrolase 2 3042015 4115968 Rxyl_3033 Rubrobacter xylanophilus DSM 9941 amidohydrolase 2 YP_645754.1 3041275 D 266117 CDS YP_645755.1 108805818 4115969 3042047..3042844 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: jan:Jann_3754 ABC transporter related; ABC transporter-like protein 3042844 4115969 Rxyl_3034 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645755.1 3042047 D 266117 CDS YP_645756.1 108805819 4115970 3042841..3043611 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3753 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3043611 4115970 Rxyl_3035 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_645756.1 3042841 D 266117 CDS YP_645757.1 108805820 4115971 3043612..3044412 1 NC_008148.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3753 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3044412 4115971 Rxyl_3036 Rubrobacter xylanophilus DSM 9941 binding-protein-dependent transport system inner membrane protein YP_645757.1 3043612 D 266117 CDS YP_645758.1 108805821 4115972 3044409..3045908 1 NC_008148.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: cya:CYA_1640 amidohydrolase family protein; amidohydrolase 3045908 4115972 Rxyl_3037 Rubrobacter xylanophilus DSM 9941 amidohydrolase YP_645758.1 3044409 D 266117 CDS YP_645759.1 108805822 4115973 3045921..3046715 1 NC_008148.1 PFAM: Creatininase; KEGG: dar:Daro_0078 creatininase; creatininase 3046715 4115973 Rxyl_3038 Rubrobacter xylanophilus DSM 9941 creatininase YP_645759.1 3045921 D 266117 CDS YP_645760.1 108805823 4114840 complement(3046917..3047738) 1 NC_008148.1 PFAM: transposase, IS4; KEGG: sru:SRU_0356 IS982 family transposase; IS4 family transposase 3047738 4114840 Rxyl_3039 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_645760.1 3046917 R 266117 CDS YP_645761.1 108805824 4114841 complement(3048173..3049180) 1 NC_008148.1 PFAM: transposase, IS4; IS4 family transposase 3049180 4114841 Rxyl_3040 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_645761.1 3048173 R 266117 CDS YP_645762.1 108805825 4114842 3050649..3051329 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bld:BLi01972 hypothetical protein; GntR family transcriptional regulator 3051329 4114842 Rxyl_3042 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_645762.1 3050649 D 266117 CDS YP_645763.1 108805826 4114843 complement(3051336..3052136) 1 NC_008148.1 PFAM: beta-lactamase-like; KEGG: tcx:Tcr_1803 beta-lactamase-like; beta-lactamase-like protein 3052136 4114843 Rxyl_3043 Rubrobacter xylanophilus DSM 9941 beta-lactamase-like protein YP_645763.1 3051336 R 266117 CDS YP_645764.1 108805827 4114844 complement(3052133..3053308) 1 NC_008148.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: eba:ebA5652 mandelate racemase/muconate lactonizing enzyme family protein; muconate cycloisomerase 3053308 4114844 Rxyl_3044 Rubrobacter xylanophilus DSM 9941 muconate cycloisomerase YP_645764.1 3052133 R 266117 CDS YP_645765.1 108805828 4114845 complement(3053314..3054627) 1 NC_008148.1 hypothetical protein 3054627 4114845 Rxyl_3045 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645765.1 3053314 R 266117 CDS YP_645766.1 108805829 4114846 complement(3054638..3055396) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gka:GK1683 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3055396 4114846 Rxyl_3046 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645766.1 3054638 R 266117 CDS YP_645767.1 108805830 4114847 complement(3055393..3056181) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO0256 short chain oxidoreductase; short-chain dehydrogenase/reductase SDR 3056181 4114847 Rxyl_3047 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645767.1 3055393 R 266117 CDS YP_645768.1 108805831 4114848 complement(3056178..3056417) 1 NC_008148.1 PFAM: biotin/lipoyl attachment; KEGG: sru:SRU_0811 2-oxo acid dehydrogenases acyltransferase (catalytic domain) protein; biotin/lipoyl attachment 3056417 4114848 Rxyl_3048 Rubrobacter xylanophilus DSM 9941 biotin/lipoyl attachment YP_645768.1 3056178 R 266117 CDS YP_645769.1 108805832 4114849 complement(3056437..3057429) 1 NC_008148.1 PFAM: Transketolase, central region Transketolase-like; KEGG: sso:SSO1526 pyruvate dehydrogenase E1 component, beta subunit; transketolase 3057429 4114849 Rxyl_3049 Rubrobacter xylanophilus DSM 9941 transketolase YP_645769.1 3056437 R 266117 CDS YP_645770.1 108805833 4114850 complement(3057426..3058424) 1 NC_008148.1 PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit; pyruvate dehydrogenase 3058424 4114850 Rxyl_3050 Rubrobacter xylanophilus DSM 9941 pyruvate dehydrogenase YP_645770.1 3057426 R 266117 CDS YP_645771.1 108805834 4114851 complement(3058780..3059787) 1 NC_008148.1 PFAM: transposase, IS4; IS4 family transposase 3059787 4114851 Rxyl_3051 Rubrobacter xylanophilus DSM 9941 IS4 family transposase YP_645771.1 3058780 R 266117 CDS YP_645772.1 108805835 4114852 3059844..3061223 1 NC_008148.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bsu:BG12548 similar to purine-cytosine permease; cytosine/purines uracil thiamine allantoin permease 3061223 4114852 Rxyl_3052 Rubrobacter xylanophilus DSM 9941 cytosine/purines uracil thiamine allantoin permease YP_645772.1 3059844 D 266117 CDS YP_645773.1 108805836 4114853 complement(3061220..3062236) 1 NC_008148.1 PFAM: sodium/calcium exchanger membrane region; KEGG: chy:CHY_2431 putative Na+/Ca+ exchanger protein; sodium/calcium exchanger membrane region 3062236 4114853 Rxyl_3053 Rubrobacter xylanophilus DSM 9941 sodium/calcium exchanger membrane region YP_645773.1 3061220 R 266117 CDS YP_645774.1 108805837 4114854 3062326..3063087 1 NC_008148.1 KEGG: mma:MM1616 phosphoribosylaminoimidazole carboxylase; phosphoribosylaminoimidazole carboxylase 3063087 4114854 Rxyl_3054 Rubrobacter xylanophilus DSM 9941 phosphoribosylaminoimidazole carboxylase YP_645774.1 3062326 D 266117 CDS YP_645775.1 108805838 4114855 3063087..3063629 1 NC_008148.1 PFAM: 2',5' RNA ligase; KEGG: ade:Adeh_3960 2',5' RNA ligase; 2',5' RNA ligase 3063629 4114855 Rxyl_3055 Rubrobacter xylanophilus DSM 9941 2',5' RNA ligase YP_645775.1 3063087 D 266117 CDS YP_645776.1 108805839 4114856 complement(3063789..3064322) 1 NC_008148.1 hypothetical protein 3064322 4114856 Rxyl_3056 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645776.1 3063789 R 266117 CDS YP_645777.1 108805840 4114857 3064524..3065390 1 NC_008148.1 TIGRFAM: conserved hypothetical protein; PFAM: diacylglycerol kinase, catalytic region; KEGG: tth:TTC1957 protein BmrU; hypothetical protein 3065390 4114857 Rxyl_3057 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645777.1 3064524 D 266117 CDS YP_645778.1 108805841 4114858 3065476..3066336 1 NC_008148.1 PFAM: acyl transferase region; KEGG: tma:TM0798 malonyl CoA-acyl carrier protein transacylase; acyl transferase domain-containing protein 3066336 4114858 Rxyl_3058 Rubrobacter xylanophilus DSM 9941 acyl transferase domain-containing protein YP_645778.1 3065476 D 266117 CDS YP_645779.1 108805842 4114859 complement(3066380..3067498) 1 NC_008148.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: hch:HCH_01892 predicted NADH:ubiquinone oxidoreductase, subunit RnfC; respiratory-chain NADH dehydrogenase domain-containing protein 3067498 4114859 Rxyl_3059 Rubrobacter xylanophilus DSM 9941 respiratory-chain NADH dehydrogenase domain-containing protein YP_645779.1 3066380 R 266117 CDS YP_645780.1 108805843 4114860 3067540..3068745 1 NC_008148.1 PFAM: Lycopene beta and epsilon cyclase; KEGG: sma:SAV1021 lycopene cyclase; lycopene beta and epsilon cyclase 3068745 4114860 Rxyl_3060 Rubrobacter xylanophilus DSM 9941 lycopene beta and epsilon cyclase YP_645780.1 3067540 D 266117 CDS YP_645781.1 108805844 4114861 complement(3068760..3069608) 1 NC_008148.1 KEGG: mth:MTH930 hypothetical protein; hypothetical protein 3069608 4114861 Rxyl_3061 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645781.1 3068760 R 266117 CDS YP_645782.1 108805845 4114862 complement(3069721..3070884) 1 NC_008148.1 PFAM: FAD linked oxidase-like; KEGG: chy:CHY_2037 cysteine-rich domain protein/FAD binding domain protein; FAD linked oxidase-like protein 3070884 4114862 Rxyl_3062 Rubrobacter xylanophilus DSM 9941 FAD linked oxidase-like protein YP_645782.1 3069721 R 266117 CDS YP_645783.1 108805846 4114863 complement(3070900..3071793) 1 NC_008148.1 PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein 3071793 4114863 Rxyl_3063 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645783.1 3070900 R 266117 CDS YP_645784.1 108805847 4114864 3071967..3072713 1 NC_008148.1 PFAM: zinc/iron permease; KEGG: ttj:TTHA1706 putative divalent heavy-metal cation transporter; zinc/iron permease 3072713 4114864 Rxyl_3064 Rubrobacter xylanophilus DSM 9941 zinc/iron permease YP_645784.1 3071967 D 266117 CDS YP_645785.1 108805848 4114865 complement(3072732..3073688) 1 NC_008148.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: sma:SAV2036 putative metal-transport protein; CorA-like Mg2+ transporter protein 3073688 4114865 Rxyl_3065 Rubrobacter xylanophilus DSM 9941 CorA-like Mg2+ transporter protein YP_645785.1 3072732 R 266117 CDS YP_645786.1 108805849 4114866 complement(3073711..3074538) 1 NC_008148.1 PFAM: FAD linked oxidase-like; KEGG: chy:CHY_2037 cysteine-rich domain protein/FAD binding domain protein; FAD linked oxidase-like protein 3074538 4114866 Rxyl_3066 Rubrobacter xylanophilus DSM 9941 FAD linked oxidase-like protein YP_645786.1 3073711 R 266117 CDS YP_645787.1 108805850 4114867 3074565..3075107 1 NC_008148.1 KEGG: sma:SAV1204 putative IS630 family transposase; IS630 family transposase 3075107 4114867 Rxyl_3067 Rubrobacter xylanophilus DSM 9941 IS630 family transposase YP_645787.1 3074565 D 266117 CDS YP_645788.1 108805851 4114868 3075107..3075703 1 NC_008148.1 hypothetical protein 3075703 4114868 Rxyl_3068 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645788.1 3075107 D 266117 CDS YP_645789.1 108805852 4114869 complement(3076122..3076712) 1 NC_008148.1 PFAM: DoxX; KEGG: sth:STH2407 hypothetical protein; DoxX protein 3076712 4114869 Rxyl_3069 Rubrobacter xylanophilus DSM 9941 DoxX protein YP_645789.1 3076122 R 266117 CDS YP_645790.1 108805853 4114870 complement(3076847..3077749) 1 NC_008148.1 PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein 3077749 4114870 Rxyl_3070 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645790.1 3076847 R 266117 CDS YP_645791.1 108805854 4114871 complement(3077788..3078741) 1 NC_008148.1 PFAM: UspA; KEGG: tfu:Tfu_1412 hypothetical protein; hypothetical protein 3078741 4114871 Rxyl_3071 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645791.1 3077788 R 266117 CDS YP_645792.1 108805855 4114872 complement(3078713..3079198) 1 NC_008148.1 PFAM: UspA; KEGG: ade:Adeh_1331 universal stress protein UspA; hypothetical protein 3079198 4114872 Rxyl_3072 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645792.1 3078713 R 266117 CDS YP_645793.1 108805856 4114873 complement(3079199..3081619) 1 NC_008148.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 3081619 4114873 Rxyl_3073 Rubrobacter xylanophilus DSM 9941 phosphoenolpyruvate synthase YP_645793.1 3079199 R 266117 CDS YP_645794.1 108805857 4114874 complement(3081665..3082099) 1 NC_008148.1 PFAM: heat shock protein Hsp20; KEGG: ade:Adeh_4352 heat shock protein HSP20; heat shock protein Hsp20 3082099 4114874 Rxyl_3074 Rubrobacter xylanophilus DSM 9941 heat shock protein Hsp20 YP_645794.1 3081665 R 266117 CDS YP_645795.1 108805858 4114875 complement(3082137..3083180) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sco:SCO0179 putative zinc-containing dehydrogenase; alcohol dehydrogenase GroES-like protein 3083180 4114875 Rxyl_3075 Rubrobacter xylanophilus DSM 9941 alcohol dehydrogenase GroES-like protein YP_645795.1 3082137 R 266117 CDS YP_645796.1 108805859 4114876 complement(3083420..3086173) 1 NC_008148.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: mth:MTH1516 cation-transporting P-ATPase PacL; P type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase 3086173 4114876 Rxyl_3076 Rubrobacter xylanophilus DSM 9941 P type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase YP_645796.1 3083420 R 266117 CDS YP_645797.1 108805860 4114877 complement(3086237..3088741) 1 NC_008148.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: Haloacid dehalogenase-like hydrolase cation transporting ATPase-like E1-E2 ATPase-associated region; KEGG: mma:MM1461 cation-transporting ATPase; P type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase 3088741 4114877 Rxyl_3077 Rubrobacter xylanophilus DSM 9941 P type K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter ATPase YP_645797.1 3086237 R 266117 CDS YP_645798.1 108805861 4114878 complement(3089069..3089365) 1 NC_008148.1 KEGG: ade:Adeh_1661 hypothetical protein; hypothetical protein 3089365 4114878 Rxyl_3078 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645798.1 3089069 R 266117 CDS YP_645799.1 108805862 4114879 complement(3089502..3089990) 1 NC_008148.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ade:Adeh_3818 FMN-binding pyridoxamine 5'-phosphate oxidase-related protein; pyridoxamine 5'-phosphate oxidase-like protein 3089990 4114879 Rxyl_3079 Rubrobacter xylanophilus DSM 9941 pyridoxamine 5'-phosphate oxidase-like protein YP_645799.1 3089502 R 266117 CDS YP_645800.1 108805863 4114880 complement(3090241..3090633) 1 NC_008148.1 KEGG: hma:pNG6026 hypothetical protein; hypothetical protein 3090633 4114880 Rxyl_3081 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645800.1 3090241 R 266117 CDS YP_645801.1 108805864 4114881 complement(3090821..3092245) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: pho:PH1035 hypothetical protein; group 1 glycosyl transferase 3092245 4114881 Rxyl_3082 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_645801.1 3090821 R 266117 CDS YP_645802.1 108805865 4114882 complement(3092261..3092839) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_2128 hypothetical protein; N-acetyltransferase GCN5 3092839 4114882 Rxyl_3083 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_645802.1 3092261 R 266117 CDS YP_645803.1 108805866 4114883 complement(3092885..3093262) 1 NC_008148.1 hypothetical protein 3093262 4114883 Rxyl_3084 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645803.1 3092885 R 266117 CDS YP_645804.1 108805867 4114884 complement(3093295..3094206) 1 NC_008148.1 PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein 3094206 4114884 Rxyl_3085 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645804.1 3093295 R 266117 CDS YP_645805.1 108805868 4114885 complement(3094328..3095008) 1 NC_008148.1 TIGRFAM: PAS; PFAM: regulatory protein, LuxR Bacterio-opsin activator, HTH; KEGG: ttj:TTHA1030 response regulator; LuxR family transcriptional regulator 3095008 4114885 Rxyl_3086 Rubrobacter xylanophilus DSM 9941 LuxR family transcriptional regulator YP_645805.1 3094328 R 266117 CDS YP_645806.1 108805869 4114886 3095162..3097420 1 NC_008148.1 PFAM: FAD linked oxidase-like luciferase-like; KEGG: tfu:Tfu_3031 similar to coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase; FAD linked oxidase-like protein 3097420 4114886 Rxyl_3087 Rubrobacter xylanophilus DSM 9941 FAD linked oxidase-like protein YP_645806.1 3095162 D 266117 CDS YP_645807.1 108805870 4114887 3097417..3098316 1 NC_008148.1 PFAM: luciferase-like; KEGG: tfu:Tfu_3031 similar to coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase; luciferase-like protein 3098316 4114887 Rxyl_3088 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_645807.1 3097417 D 266117 CDS YP_645808.1 108805871 4114888 3098349..3099368 1 NC_008148.1 PFAM: luciferase-like; KEGG: sth:STH1269 bacterial luciferase-like monooxygenase; luciferase-like protein 3099368 4114888 Rxyl_3089 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_645808.1 3098349 D 266117 CDS YP_645809.1 108805872 4114889 complement(3099621..3101579) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 3101579 4114889 Rxyl_3090 Rubrobacter xylanophilus DSM 9941 polysaccharide biosynthesis protein CapD YP_645809.1 3099621 R 266117 CDS YP_645810.1 108805873 4114890 complement(3101625..3102608) 1 NC_008148.1 PFAM: glycosyl transferase, family 4; KEGG: rru:Rru_A3657 glycosyl transferase, family 4; glycosyl transferase family protein 3102608 4114890 Rxyl_3091 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_645810.1 3101625 R 266117 CDS YP_645811.1 108805874 4114891 complement(3102605..3103483) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: fra:Francci3_1303 methyltransferase FkbM; NmrA-like protein 3103483 4114891 Rxyl_3092 Rubrobacter xylanophilus DSM 9941 NmrA-like protein YP_645811.1 3102605 R 266117 CDS YP_645812.1 108805875 4114892 complement(3103500..3103934) 1 NC_008148.1 hypothetical protein 3103934 4114892 Rxyl_3093 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645812.1 3103500 R 266117 CDS YP_645813.1 108805876 4114893 3104083..3104946 1 NC_008148.1 hypothetical protein 3104946 4114893 Rxyl_3094 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645813.1 3104083 D 266117 CDS YP_645814.1 108805877 4114894 3104943..3105803 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: mlo:mll7088 similar to lipopolysaccharide core biosynthesis glycosyl transferase lpsC; glycosyl transferase family protein 3105803 4114894 Rxyl_3095 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_645814.1 3104943 D 266117 CDS YP_645815.1 108805878 4114895 3105927..3106934 1 NC_008148.1 hypothetical protein 3106934 4114895 Rxyl_3096 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645815.1 3105927 D 266117 CDS YP_645816.1 108805879 4114896 3106994..3108070 1 NC_008148.1 KEGG: lpl:lp_1377 hypothetical protein; hypothetical protein 3108070 4114896 Rxyl_3097 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645816.1 3106994 D 266117 CDS YP_645817.1 108805880 4114897 3108096..3109022 1 NC_008148.1 hypothetical protein 3109022 4114897 Rxyl_3098 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645817.1 3108096 D 266117 CDS YP_645818.1 108805881 4114898 3109041..3109640 1 NC_008148.1 KEGG: jan:Jann_1985 hypothetical protein; hypothetical protein 3109640 4114898 Rxyl_3099 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645818.1 3109041 D 266117 CDS YP_645819.1 108805882 4114899 complement(3109645..3110403) 1 NC_008148.1 PFAM: sulfotransferase; KEGG: syw:SYNW0083 putative deacetylase sulfotransferase; sulfotransferase 3110403 4114899 Rxyl_3100 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_645819.1 3109645 R 266117 CDS YP_645820.1 108805883 4114900 complement(3110510..3111457) 1 NC_008148.1 hypothetical protein 3111457 4114900 Rxyl_3101 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645820.1 3110510 R 266117 CDS YP_645821.1 108805884 4114901 complement(3111459..3111854) 1 NC_008148.1 hypothetical protein 3111854 4114901 Rxyl_3102 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645821.1 3111459 R 266117 CDS YP_645822.1 108805885 4114902 complement(3111841..3112647) 1 NC_008148.1 KEGG: bha:BH3369 hypothetical protein; hypothetical protein 3112647 4114902 Rxyl_3103 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645822.1 3111841 R 266117 CDS YP_645823.1 108805886 4114903 complement(3112676..3113782) 1 NC_008148.1 PFAM: sulfotransferase; KEGG: ddi:DDB0167934 hypothetical protein; sulfotransferase 3113782 4114903 Rxyl_3104 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_645823.1 3112676 R 266117 CDS YP_645824.1 108805887 4114904 complement(3113827..3114993) 1 NC_008148.1 PFAM: sulfotransferase; KEGG: ddi:DDB0167934 hypothetical protein; sulfotransferase 3114993 4114904 Rxyl_3105 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_645824.1 3113827 R 266117 CDS YP_645825.1 108805888 4114905 complement(3115023..3115859) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mth:MTH1792 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3115859 4114905 Rxyl_3106 Rubrobacter xylanophilus DSM 9941 dTDP-4-dehydrorhamnose reductase YP_645825.1 3115023 R 266117 CDS YP_645826.1 108805889 4114906 complement(3115869..3117227) 1 NC_008148.1 PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A2400 glycosyl transferase, group 1; group 1 glycosyl transferase 3117227 4114906 Rxyl_3107 Rubrobacter xylanophilus DSM 9941 group 1 glycosyl transferase YP_645826.1 3115869 R 266117 CDS YP_645827.1 108805890 4114907 complement(3117224..3118336) 1 NC_008148.1 PFAM: sulfotransferase; KEGG: ddi:DDB0167934 hypothetical protein; sulfotransferase 3118336 4114907 Rxyl_3108 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_645827.1 3117224 R 266117 CDS YP_645828.1 108805891 4114908 complement(3118356..3119339) 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: mma:MM2217 hypothetical protein; glycosyl transferase family protein 3119339 4114908 Rxyl_3109 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_645828.1 3118356 R 266117 CDS YP_645829.1 108805892 4114909 complement(3119336..3120814) 1 NC_008148.1 PFAM: sulfatase; KEGG: gvi:gll3431 probable sulfatase; sulfatase 3120814 4114909 Rxyl_3110 Rubrobacter xylanophilus DSM 9941 sulfatase YP_645829.1 3119336 R 266117 CDS YP_645830.1 108805893 4114910 complement(3120811..3121800) 1 NC_008148.1 PFAM: sulfotransferase; KEGG: rru:Rru_A0854 sulfotransferase; sulfotransferase 3121800 4114910 Rxyl_3111 Rubrobacter xylanophilus DSM 9941 sulfotransferase YP_645830.1 3120811 R 266117 CDS YP_645831.1 108805894 4114911 3121911..3123401 1 NC_008148.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: sth:STH1068 putative amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 3123401 4114911 Rxyl_3112 Rubrobacter xylanophilus DSM 9941 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_645831.1 3121911 D 266117 CDS YP_645832.1 108805895 4114912 complement(3123408..3124328) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ade:Adeh_1954 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3124328 4114912 Rxyl_3113 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_645832.1 3123408 R 266117 CDS YP_645833.1 108805896 4114913 complement(3124325..3125293) 1 NC_008148.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: sru:SRU_0597 UDP-glucuronate decarboxylase; NAD-dependent epimerase/dehydratase 3125293 4114913 Rxyl_3114 Rubrobacter xylanophilus DSM 9941 NAD-dependent epimerase/dehydratase YP_645833.1 3124325 R 266117 CDS YP_645834.1 108805897 4114914 complement(3125286..3126665) 1 NC_008148.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: gvi:gll0969 UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase 3126665 4114914 Rxyl_3115 Rubrobacter xylanophilus DSM 9941 UDP-glucose 6-dehydrogenase YP_645834.1 3125286 R 266117 CDS YP_645835.1 108805898 4114915 3126899..3127717 1 NC_008148.1 PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A2397 ABC-2; ABC transporter 3127717 4114915 Rxyl_3116 Rubrobacter xylanophilus DSM 9941 ABC transporter YP_645835.1 3126899 D 266117 CDS YP_645836.1 108805899 4114916 3127714..3129024 1 NC_008148.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pfo:Pfl_4048 ABC transporter-like; ABC transporter-like protein 3129024 4114916 Rxyl_3117 Rubrobacter xylanophilus DSM 9941 ABC transporter-like protein YP_645836.1 3127714 D 266117 CDS YP_645837.1 108805900 4114917 3129029..3130033 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2879 glycosyl transferase, family 2; glycosyl transferase family protein 3130033 4114917 Rxyl_3118 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_645837.1 3129029 D 266117 CDS YP_645838.1 108805901 4114918 3130043..3130891 1 NC_008148.1 PFAM: glycosyl transferase, family 2; KEGG: mca:MCA1435 glycosyl transferase, group 2 family; glycosyl transferase family protein 3130891 4114918 Rxyl_3119 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_645838.1 3130043 D 266117 CDS YP_645839.1 108805902 4114919 complement(3130888..3131439) 1 NC_008148.1 KEGG: mca:MCA1284 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 3131439 4114919 Rxyl_3120 Rubrobacter xylanophilus DSM 9941 dTDP-4-dehydrorhamnose 3,5-epimerase YP_645839.1 3130888 R 266117 CDS YP_645840.1 108805903 4114920 complement(3131436..3132317) 1 NC_008148.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pae:PA5163 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 3132317 4114920 Rxyl_3121 Rubrobacter xylanophilus DSM 9941 glucose-1-phosphate thymidylyltransferase YP_645840.1 3131436 R 266117 CDS YP_645841.1 108805904 4114921 complement(3132314..3133408) 1 NC_008148.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mca:MCA1282 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 3133408 4114921 Rxyl_3122 Rubrobacter xylanophilus DSM 9941 dTDP-glucose 4,6-dehydratase YP_645841.1 3132314 R 266117 CDS YP_645842.1 108805905 4114922 3133656..3134723 1 NC_008148.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ttj:TTHA0491 threonine synthase; L-threonine synthase 3134723 4114922 Rxyl_3123 Rubrobacter xylanophilus DSM 9941 L-threonine synthase YP_645842.1 3133656 D 266117 CDS YP_645843.1 108805906 4114923 3134720..3135652 1 NC_008148.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase GHMP kinase, C terminal; KEGG: mta:Moth_1305 homoserine kinase; homoserine kinase 3135652 4114923 Rxyl_3124 Rubrobacter xylanophilus DSM 9941 homoserine kinase YP_645843.1 3134720 D 266117 CDS YP_645844.1 108805907 4114924 3136156..3137850 1 NC_008148.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: det:DET0833 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 3137850 4114924 Rxyl_3125 Rubrobacter xylanophilus DSM 9941 acetolactate synthase large subunit YP_645844.1 3136156 D 266117 CDS YP_645845.1 108805908 4114925 3137843..3138298 1 NC_008148.1 hypothetical protein 3138298 4114925 Rxyl_3126 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645845.1 3137843 D 266117 CDS YP_645846.1 108805909 4114926 3138303..3139328 1 NC_008148.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 3139328 4114926 Rxyl_3127 Rubrobacter xylanophilus DSM 9941 ketol-acid reductoisomerase YP_645846.1 3138303 D 266117 CDS YP_645847.1 108805910 4114927 3139325..3140281 1 NC_008148.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; KEGG: deh:cbdb_A11 branched-chain amino acid aminotransferase; branched chain amino acid aminotransferase 3140281 4114927 Rxyl_3128 Rubrobacter xylanophilus DSM 9941 branched chain amino acid aminotransferase YP_645847.1 3139325 D 266117 CDS YP_645848.1 108805911 4114928 3140514..3142046 1 NC_008148.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: mta:Moth_2255 2-isopropylmalate synthase; 2-isopropylmalate synthase 3142046 4114928 Rxyl_3129 Rubrobacter xylanophilus DSM 9941 2-isopropylmalate synthase YP_645848.1 3140514 D 266117 CDS YP_645849.1 108805912 4114929 3142169..3143236 1 NC_008148.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3143236 4114929 Rxyl_3130 Rubrobacter xylanophilus DSM 9941 3-isopropylmalate dehydrogenase YP_645849.1 3142169 D 266117 CDS YP_645850.1 108805913 4114930 3143233..3144795 1 NC_008148.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: pab:PAB0894 2-isopropylmalate synthase; putative alpha-isopropylmalate/homocitrate synthase family transferase 3144795 4114930 Rxyl_3131 Rubrobacter xylanophilus DSM 9941 putative alpha-isopropylmalate/homocitrate synthase family transferase YP_645850.1 3143233 D 266117 CDS YP_645851.1 108805914 4114931 complement(3144800..3145492) 1 NC_008148.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_1595 transcriptional regulator, GntR family; GntR family transcriptional regulator 3145492 4114931 Rxyl_3132 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_645851.1 3144800 R 266117 CDS YP_645852.1 108805915 4114932 complement(3145497..3147071) 1 NC_008148.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 3147071 4114932 Rxyl_3133 Rubrobacter xylanophilus DSM 9941 tricarballylate dehydrogenase YP_645852.1 3145497 R 266117 CDS YP_645853.1 108805916 4114933 3147273..3148208 1 NC_008148.1 PFAM: Uncharacterized protein UPF0065; KEGG: rsp:RSP_1420 TRAP-T family transporter, periplasmic binding protein; hypothetical protein 3148208 4114933 Rxyl_3134 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645853.1 3147273 D 266117 CDS YP_645854.1 108805917 4114934 3148218..3148739 1 NC_008148.1 KEGG: reu:Reut_A3430 conserved hypothetical membrane protein; hypothetical protein 3148739 4114934 Rxyl_3135 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645854.1 3148218 D 266117 CDS YP_645855.1 108805918 4114935 3148744..3150282 1 NC_008148.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:blr3163 hypothetical protein; hypothetical protein 3150282 4114935 Rxyl_3136 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645855.1 3148744 D 266117 CDS YP_645856.1 108805919 4114936 complement(3150292..3151698) 1 NC_008148.1 hypothetical protein 3151698 4114936 Rxyl_3137 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645856.1 3150292 R 266117 CDS YP_645857.1 108805920 4114937 complement(3151836..3152903) 1 NC_008148.1 PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppu:PP0099 hypothetical protein; radical SAM family protein 3152903 4114937 Rxyl_3138 Rubrobacter xylanophilus DSM 9941 radical SAM family protein YP_645857.1 3151836 R 266117 CDS YP_645858.1 108805921 4114938 3153031..3153759 1 NC_008148.1 KEGG: ctc:CTC01348 membrane spanning protein; membrane spanning protein 3153759 4114938 Rxyl_3139 Rubrobacter xylanophilus DSM 9941 membrane spanning protein YP_645858.1 3153031 D 266117 CDS YP_645859.1 108805922 4114939 3153764..3154084 1 NC_008148.1 KEGG: chy:CHY_1194 PII family protein; nitrogen regulatory protein P-II 3154084 4114939 Rxyl_3140 Rubrobacter xylanophilus DSM 9941 nitrogen regulatory protein P-II YP_645859.1 3153764 D 266117 CDS YP_645860.1 108805923 4114940 complement(3154107..3155000) 1 NC_008148.1 PFAM: UspA; KEGG: mma:MM1452 universal stress protein; hypothetical protein 3155000 4114940 Rxyl_3141 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645860.1 3154107 R 266117 CDS YP_645861.1 108805924 4114941 complement(3155073..3155420) 1 NC_008148.1 PFAM: Na+/H+ antiporter subunit; KEGG: mac:MA4566 multiple resistance/pH regulation related protein G (Na+/H+ antiporter); Na+/H+ antiporter subunit 3155420 4114941 Rxyl_3142 Rubrobacter xylanophilus DSM 9941 Na+/H+ antiporter subunit YP_645861.1 3155073 R 266117 CDS YP_645862.1 108805925 4114942 complement(3155420..3155686) 1 NC_008148.1 PFAM: multiple resistance and pH regulation protein F; KEGG: tcx:Tcr_0059 multiple resistance and pH regulation protein F; membrane bound protein complex subunit mbxB 3155686 4114942 Rxyl_3143 Rubrobacter xylanophilus DSM 9941 membrane bound protein complex subunit mbxB YP_645862.1 3155420 R 266117 CDS YP_645863.1 108805926 4114943 complement(3155708..3156199) 1 NC_008148.1 PFAM: cation antiporter; KEGG: sme:SMc00055 putative cation efflux system protein; cation antiporter 3156199 4114943 Rxyl_3144 Rubrobacter xylanophilus DSM 9941 cation antiporter YP_645863.1 3155708 R 266117 CDS YP_645864.1 108805927 4114944 complement(3156196..3157584) 1 NC_008148.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bha:BH1316 Na+/H+ antiporter; NADH dehydrogenase (quinone) 3157584 4114944 Rxyl_3145 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (quinone) YP_645864.1 3156196 R 266117 CDS YP_645865.1 108805928 4114945 complement(3157581..3157973) 1 NC_008148.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: bha:BH1317 Na+/H+ antiporter; NADH-ubiquinone oxidoreductase subunit 4L 3157973 4114945 Rxyl_3146 Rubrobacter xylanophilus DSM 9941 NADH-ubiquinone oxidoreductase subunit 4L YP_645865.1 3157581 R 266117 CDS YP_645866.1 108805929 4114946 complement(3157970..3158422) 1 NC_008148.1 PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: nfa:nfa52900 putative cation antiporter NADH dehydrogenase subunit; Na+/H+ antiporter MnhB subunit-like protein 3158422 4114946 Rxyl_3147 Rubrobacter xylanophilus DSM 9941 Na+/H+ antiporter MnhB subunit-like protein YP_645866.1 3157970 R 266117 CDS YP_645867.1 108805930 4114947 complement(3158419..3160701) 1 NC_008148.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tbd:Tbd_0497 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3160701 4114947 Rxyl_3148 Rubrobacter xylanophilus DSM 9941 NADH dehydrogenase (quinone) YP_645867.1 3158419 R 266117 CDS YP_645868.1 108805931 4114948 complement(3160812..3163073) 1 NC_008148.1 PFAM: glycosyl transferase, family 2 Methyltransferase type 11 Methyltransferase type 12; KEGG: nfa:nfa22310 putative glycosyltransferase; glycosyl transferase family protein 3163073 4114948 Rxyl_3149 Rubrobacter xylanophilus DSM 9941 glycosyl transferase family protein YP_645868.1 3160812 R 266117 CDS YP_645869.1 108805932 4114949 complement(3163060..3163818) 1 NC_008148.1 PFAM: Creatininase; KEGG: nfa:nfa32090 hypothetical protein; creatininase 3163818 4114949 Rxyl_3150 Rubrobacter xylanophilus DSM 9941 creatininase YP_645869.1 3163060 R 266117 CDS YP_645870.1 108805933 4114950 complement(3163808..3165010) 1 NC_008148.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: mpa:MAP4154 L-Lactate dehydrogenase (cytochrome); (S)-2-hydroxy-acid oxidase 3165010 4114950 Rxyl_3151 Rubrobacter xylanophilus DSM 9941 (S)-2-hydroxy-acid oxidase YP_645870.1 3163808 R 266117 CDS YP_645871.1 108805934 4114951 complement(3165019..3166881) 1 NC_008148.1 PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; SMART: von Willebrand factor, type A ATPase; KEGG: nfa:nfa11980 hypothetical protein; ATPase 3166881 4114951 Rxyl_3152 Rubrobacter xylanophilus DSM 9941 ATPase YP_645871.1 3165019 R 266117 CDS YP_645872.1 108805935 4114952 complement(3166892..3168019) 1 NC_008148.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: nfa:nfa11970 putative dehydrogenase; zinc-binding alcohol dehydrogenase 3168019 4114952 Rxyl_3153 Rubrobacter xylanophilus DSM 9941 zinc-binding alcohol dehydrogenase YP_645872.1 3166892 R 266117 CDS YP_645873.1 108805936 4114953 complement(3168037..3169140) 1 NC_008148.1 PFAM: Radical SAM; KEGG: nfa:nfa34430 hypothetical protein; radical SAM family protein 3169140 4114953 Rxyl_3154 Rubrobacter xylanophilus DSM 9941 radical SAM family protein YP_645873.1 3168037 R 266117 CDS YP_645874.1 108805937 4114954 complement(3169130..3169408) 1 NC_008148.1 hypothetical protein 3169408 4114954 Rxyl_3155 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645874.1 3169130 R 266117 CDS YP_645875.1 108805938 4114955 complement(3169446..3170300) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpa:MAP1451 hypothetical protein; short-chain dehydrogenase/reductase SDR 3170300 4114955 Rxyl_3156 Rubrobacter xylanophilus DSM 9941 short-chain dehydrogenase/reductase SDR YP_645875.1 3169446 R 266117 CDS YP_645876.1 108805939 4114956 complement(3170564..3171364) 1 NC_008148.1 PFAM: DNA methylase N-4/N-6; KEGG: ade:Adeh_2855 DNA methylase N-4/N-6; DNA methylase N-4/N-6 3171364 4114956 Rxyl_3157 Rubrobacter xylanophilus DSM 9941 DNA methylase N-4/N-6 YP_645876.1 3170564 R 266117 CDS YP_645877.1 108805940 4114957 complement(3171379..3172902) 1 NC_008148.1 PFAM: Na+/solute symporter; KEGG: sru:SRU_1998 pantothenate permease; Na+/solute symporter 3172902 4114957 Rxyl_3158 Rubrobacter xylanophilus DSM 9941 Na+/solute symporter YP_645877.1 3171379 R 266117 CDS YP_645878.1 108805941 4114958 complement(3172899..3173147) 1 NC_008148.1 hypothetical protein 3173147 4114958 Rxyl_3159 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645878.1 3172899 R 266117 CDS YP_645879.1 108805942 4114959 complement(3173245..3173787) 1 NC_008148.1 PFAM: thioesterase superfamily; KEGG: hma:rrnAC2032 thioesterase of unknown specificity; thioesterase superfamily protein 3173787 4114959 Rxyl_3160 Rubrobacter xylanophilus DSM 9941 thioesterase superfamily protein YP_645879.1 3173245 R 266117 CDS YP_645880.1 108805943 4114960 3173805..3175139 1 NC_008148.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mhu:Mhun_2406 tetratricopeptide TPR_2; hypothetical protein 3175139 4114960 Rxyl_3161 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645880.1 3173805 D 266117 CDS YP_645881.1 108805944 4114961 complement(3175377..3175982) 1 NC_008148.1 KEGG: tko:TK0480 metal-dependent phosphohydrolase, HD superfamily; TIGRFAM: uncharacterized domain HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 3175982 4114961 Rxyl_3163 Rubrobacter xylanophilus DSM 9941 metal dependent phosphohydrolase YP_645881.1 3175377 R 266117 CDS YP_645882.1 108805945 4114962 complement(3176021..3176950) 1 NC_008148.1 PFAM: periplasmic binding protein; KEGG: eli:ELI_10795 probable periplasmic substrate-binding protein; periplasmic binding protein 3176950 4114962 Rxyl_3164 Rubrobacter xylanophilus DSM 9941 periplasmic binding protein YP_645882.1 3176021 R 266117 CDS YP_645883.1 108805946 4114963 complement(3176950..3178080) 1 NC_008148.1 PFAM: CBS peptidase M50; KEGG: sil:SPO1636 SREBP protease/CBS domain; peptidase M50 3178080 4114963 Rxyl_3165 Rubrobacter xylanophilus DSM 9941 peptidase M50 YP_645883.1 3176950 R 266117 CDS YP_645884.1 108805947 4114964 3178140..3179888 1 NC_008148.1 PFAM: DNA-directed DNA polymerase 3'-5' exonuclease; KEGG: tpv:TP01_0386 hypothetical protein; DNA-directed DNA polymerase 3179888 4114964 Rxyl_3166 Rubrobacter xylanophilus DSM 9941 DNA-directed DNA polymerase YP_645884.1 3178140 D 266117 CDS YP_645885.1 108805948 4114965 3179893..3180345 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C6642 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3180345 4114965 Rxyl_3167 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_645885.1 3179893 D 266117 CDS YP_645886.1 108805949 4114966 complement(3180339..3181211) 1 NC_008148.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: dra:DR1295 PecM-related protein; hypothetical protein 3181211 4114966 Rxyl_3168 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645886.1 3180339 R 266117 CDS YP_645887.1 108805950 4114967 complement(3181287..3182879) 1 NC_008148.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rpb:RPB_0810 alpha amylase; alpha amylase 3182879 4114967 Rxyl_3169 Rubrobacter xylanophilus DSM 9941 alpha amylase YP_645887.1 3181287 R 266117 CDS YP_645888.1 108805951 4114968 complement(3182920..3184071) 1 NC_008148.1 PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_0828 major facilitator superfamily (MFS) transporter; major facilitator transporter 3184071 4114968 Rxyl_3170 Rubrobacter xylanophilus DSM 9941 major facilitator transporter YP_645888.1 3182920 R 266117 CDS YP_645889.1 108805952 4114969 complement(3184157..3185293) 1 NC_008148.1 KEGG: nfa:nfa53760 hypothetical protein; hypothetical protein 3185293 4114969 Rxyl_3171 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645889.1 3184157 R 266117 CDS YP_645890.1 108805953 4114970 3185445..3185690 1 NC_008148.1 hypothetical protein 3185690 4114970 Rxyl_3172 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645890.1 3185445 D 266117 CDS YP_645891.1 108805954 4114971 complement(3185687..3186247) 1 NC_008148.1 hypothetical protein 3186247 4114971 Rxyl_3173 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645891.1 3185687 R 266117 CDS YP_645892.1 108805955 4114972 complement(3186244..3186702) 1 NC_008148.1 hypothetical protein 3186702 4114972 Rxyl_3174 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645892.1 3186244 R 266117 CDS YP_645893.1 108805956 4114973 complement(3186764..3188161) 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: ade:Adeh_3025 aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase (NAD(P)+) 3188161 4114973 Rxyl_3175 Rubrobacter xylanophilus DSM 9941 succinate-semialdehyde dehydrogenase (NAD(P)+) YP_645893.1 3186764 R 266117 CDS YP_645894.1 108805957 4114974 3188261..3189403 1 NC_008148.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding Domain of unknown function DUF1730; KEGG: xcv:XCV2606 putative iron-sulfur cluster-binding protein; hypothetical protein 3189403 4114974 Rxyl_3176 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645894.1 3188261 D 266117 CDS YP_645895.1 108805958 4114975 3189418..3190203 1 NC_008148.1 PFAM: heat shock protein DnaJ-like; KEGG: cya:CYA_2055 DnaJ family protein; heat shock protein DnaJ-like protein 3190203 4114975 Rxyl_3177 Rubrobacter xylanophilus DSM 9941 heat shock protein DnaJ-like protein YP_645895.1 3189418 D 266117 CDS YP_645896.1 108805959 4114976 3190252..3191838 1 NC_008148.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bha:BH0371 hypothetical protein; peptidase M3A and M3B, thimet/oligopeptidase F 3191838 4114976 Rxyl_3178 Rubrobacter xylanophilus DSM 9941 peptidase M3A and M3B, thimet/oligopeptidase F YP_645896.1 3190252 D 266117 CDS YP_645897.1 108805960 4114977 complement(3192327..3193232) 1 NC_008148.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gme:Gmet_0682 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3193232 4114977 Rxyl_3180 Rubrobacter xylanophilus DSM 9941 N-acetyltransferase GCN5 YP_645897.1 3192327 R 266117 CDS YP_645898.1 108805961 4114978 complement(3193435..3194403) 1 NC_008148.1 PFAM: aldo/keto reductase; KEGG: gka:GK1975 K+ channel beta subunit; aldo/keto reductase 3194403 4114978 Rxyl_3181 Rubrobacter xylanophilus DSM 9941 aldo/keto reductase YP_645898.1 3193435 R 266117 CDS YP_645899.1 108805962 4114979 3194580..3195230 1 NC_008148.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 3195230 4114979 Rxyl_3182 Rubrobacter xylanophilus DSM 9941 redox-sensing transcriptional repressor Rex YP_645899.1 3194580 D 266117 CDS YP_645900.1 108805963 4114980 complement(3195659..3196039) 1 NC_008148.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3196039 4114980 Rxyl_3183 Rubrobacter xylanophilus DSM 9941 glycine cleavage system protein H YP_645900.1 3195659 R 266117 CDS YP_645901.1 108805964 4114981 complement(3196032..3197150) 1 NC_008148.1 KEGG: ade:Adeh_1245 glycine cleavage system T protein; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); aminomethyltransferase 3197150 4114981 Rxyl_3184 Rubrobacter xylanophilus DSM 9941 aminomethyltransferase YP_645901.1 3196032 R 266117 CDS YP_645902.1 108805965 4114982 complement(3197144..3198559) 1 NC_008148.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 3198559 4114982 Rxyl_3185 Rubrobacter xylanophilus DSM 9941 glycine dehydrogenase subunit 2 YP_645902.1 3197144 R 266117 CDS YP_645903.1 108805966 4114983 complement(3198549..3199838) 1 NC_008148.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 3199838 4114983 Rxyl_3186 Rubrobacter xylanophilus DSM 9941 glycine dehydrogenase subunit 1 YP_645903.1 3198549 R 266117 CDS YP_645904.1 108805967 4114984 3200264..3200464 1 NC_008148.1 hypothetical protein 3200464 4114984 Rxyl_3187 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645904.1 3200264 D 266117 CDS YP_645905.1 108805968 4114985 complement(3200505..3201611) 1 NC_008148.1 PFAM: regulatory protein, LuxR; KEGG: ade:Adeh_2191 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3201611 4114985 Rxyl_3188 Rubrobacter xylanophilus DSM 9941 LuxR family transcriptional regulator YP_645905.1 3200505 R 266117 CDS YP_645906.1 108805969 4114986 3201705..3202277 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: ret:RHE_PF00016 hypothetical protein; cupin 2 barrel domain-containing protein 3202277 4114986 Rxyl_3189 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_645906.1 3201705 D 266117 CDS YP_645907.1 108805970 4114987 complement(3202639..3203247) 1 NC_008148.1 PFAM: regulatory protein, TetR; KEGG: nar:Saro_0992 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 3203247 4114987 Rxyl_3190 Rubrobacter xylanophilus DSM 9941 TetR family transcriptional regulator YP_645907.1 3202639 R 266117 CDS YP_645908.1 108805971 4114988 3203380..3203919 1 NC_008148.1 PFAM: Cupin 2, conserved barrel; KEGG: sco:SCO4483 hypothetical protein; cupin 2 barrel domain-containing protein 3203919 4114988 Rxyl_3191 Rubrobacter xylanophilus DSM 9941 cupin 2 barrel domain-containing protein YP_645908.1 3203380 D 266117 CDS YP_645909.1 108805972 4114989 complement(3204088..3205059) 1 NC_008148.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: noc:Noc_2604 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase 3205059 4114989 Rxyl_3192 Rubrobacter xylanophilus DSM 9941 cysteine synthase YP_645909.1 3204088 R 266117 CDS YP_645910.1 108805973 4114990 complement(3205072..3205839) 1 NC_008148.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO1611 putative dehydrogenase; short chain dehydrogenase 3205839 4114990 Rxyl_3193 Rubrobacter xylanophilus DSM 9941 short chain dehydrogenase YP_645910.1 3205072 R 266117 CDS YP_645911.1 108805974 4114991 complement(3205842..3207203) 1 NC_008148.1 PFAM: aldehyde dehydrogenase; KEGG: mpa:MAP2929c aldehyde dehydrogenase family protein; betaine-aldehyde dehydrogenase 3207203 4114991 Rxyl_3194 Rubrobacter xylanophilus DSM 9941 betaine-aldehyde dehydrogenase YP_645911.1 3205842 R 266117 CDS YP_645912.1 108805975 4114992 complement(3207187..3207912) 1 NC_008148.1 PFAM: glutamine amidotransferase class-I peptidase C26; KEGG: mpa:MAP2930c hypothetical protein; peptidase C26 3207912 4114992 Rxyl_3195 Rubrobacter xylanophilus DSM 9941 peptidase C26 YP_645912.1 3207187 R 266117 CDS YP_645913.1 108805976 4114993 complement(3207909..3209276) 1 NC_008148.1 PFAM: glutamine synthetase, catalytic region; KEGG: sco:SCO1613 putative glutamine synthetase; L-glutamine synthetase 3209276 4114993 Rxyl_3196 Rubrobacter xylanophilus DSM 9941 L-glutamine synthetase YP_645913.1 3207909 R 266117 CDS YP_645914.1 108805977 4114994 complement(3209297..3210739) 1 NC_008148.1 TIGRFAM: Ethanolamine permease; PFAM: amino acid permease-associated region; KEGG: ppu:PP0544 ethanolamine transporter; ethanolamine permease 3210739 4114994 Rxyl_3197 Rubrobacter xylanophilus DSM 9941 ethanolamine permease YP_645914.1 3209297 R 266117 CDS YP_645915.1 108805978 4114995 3210927..3211712 1 NC_008148.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: tte:TTE0461 Transcriptional regulator; GntR family transcriptional regulator 3211712 4114995 Rxyl_3198 Rubrobacter xylanophilus DSM 9941 GntR family transcriptional regulator YP_645915.1 3210927 D 266117 CDS YP_645916.1 108805979 4114996 3211738..3212076 1 NC_008148.1 TIGRFAM: Secretion chaperone CsaA; PFAM: t-RNA-binding region; KEGG: rsp:RSP_3365 protein secretion chaperonine; secretion chaperone CsaA 3212076 4114996 Rxyl_3199 Rubrobacter xylanophilus DSM 9941 secretion chaperone CsaA YP_645916.1 3211738 D 266117 CDS YP_645917.1 108805980 4114997 3212141..3212851 1 NC_008148.1 PFAM: protein of unknown function DUF124; KEGG: tfu:Tfu_0236 hypothetical protein; hypothetical protein 3212851 4114997 Rxyl_3200 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645917.1 3212141 D 266117 CDS YP_645918.1 108805981 4114998 3212929..3213891 1 NC_008148.1 PFAM: luciferase-like; KEGG: sco:SCO7290 dehydrogenase; luciferase-like protein 3213891 4114998 Rxyl_3201 Rubrobacter xylanophilus DSM 9941 luciferase-like protein YP_645918.1 3212929 D 266117 CDS YP_645919.1 108805982 4114999 complement(3213896..3216349) 1 NC_008148.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: det:DET0194 leucyl-tRNA synthetase; leucyl-tRNA synthetase 3216349 4114999 Rxyl_3202 Rubrobacter xylanophilus DSM 9941 leucyl-tRNA synthetase YP_645919.1 3213896 R 266117 CDS YP_645920.1 108805983 4115000 complement(3216466..3217176) 1 NC_008148.1 PFAM: protein of unknown function DUF92, transmembrane; KEGG: gvi:gll0900 hypothetical protein; hypothetical protein 3217176 4115000 Rxyl_3203 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645920.1 3216466 R 266117 CDS YP_645921.1 108805984 4115001 complement(3217188..3217637) 1 NC_008148.1 hypothetical protein 3217637 4115001 Rxyl_3204 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645921.1 3217188 R 266117 CDS YP_645922.1 108805985 4115002 complement(3217642..3217977) 1 NC_008148.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: tbd:Tbd_0023 hypothetical protein with TPR repeat; hypothetical protein 3217977 4115002 Rxyl_3205 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645922.1 3217642 R 266117 CDS YP_645923.1 108805986 4115003 3218370..3218588 1 NC_008148.1 TIGRFAM: molybdenum-pterin binding domain; PFAM: TOBE; KEGG: gvi:gsl4284 ABC transporter solute-binding protein; molybdenum-pterin-binding domain-containing protein 3218588 4115003 Rxyl_3207 Rubrobacter xylanophilus DSM 9941 molybdenum-pterin-binding domain-containing protein YP_645923.1 3218370 D 266117 CDS YP_645924.1 108805987 4115004 complement(3218647..3219810) 1 NC_008148.1 PFAM: Lytic transglycosylase, catalytic; KEGG: tfu:Tfu_0480 similar to cell wall-associated hydrolase (invasion-associated proteins); lytic transglycosylase catalytic subunit 3219810 4115004 Rxyl_3208 Rubrobacter xylanophilus DSM 9941 lytic transglycosylase catalytic subunit YP_645924.1 3218647 R 266117 CDS YP_645925.1 108805988 4115005 complement(3219837..3220703) 1 NC_008148.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain; chromosome segregation DNA-binding protein 3220703 4115005 Rxyl_3209 Rubrobacter xylanophilus DSM 9941 chromosome segregation DNA-binding protein YP_645925.1 3219837 R 266117 CDS YP_645926.1 108805989 4115006 complement(3220696..3221463) 1 NC_008148.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sth:STH3333 ParA, ParA family ATPase; chromosome segregation ATPase 3221463 4115006 Rxyl_3210 Rubrobacter xylanophilus DSM 9941 chromosome segregation ATPase YP_645926.1 3220696 R 266117 CDS YP_645927.1 108805990 4115007 complement(3221494..3222279) 1 NC_008148.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: dra:DR0014 gidB protein; methyltransferase GidB 3222279 4115007 Rxyl_3211 Rubrobacter xylanophilus DSM 9941 methyltransferase GidB YP_645927.1 3221494 R 266117 CDS YP_645928.1 108805991 4115008 complement(3222345..3223031) 1 NC_008148.1 PFAM: single-stranded nucleic acid binding R3H; KEGG: sth:STH3337 SpoIIIJ-associated RNA-binding protein; single-stranded nucleic acid binding R3H 3223031 4115008 Rxyl_3212 Rubrobacter xylanophilus DSM 9941 single-stranded nucleic acid binding R3H YP_645928.1 3222345 R 266117 CDS YP_645929.1 108805992 4115009 complement(3223028..3223864) 1 NC_008148.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pca:Pcar_3143 hypothetical protein; protein translocase subunit yidC 3223864 4115009 Rxyl_3213 Rubrobacter xylanophilus DSM 9941 protein translocase subunit yidC YP_645929.1 3223028 R 266117 CDS YP_645930.1 108805993 4115010 complement(3223875..3224087) 1 NC_008148.1 PFAM: protein of unknown function DUF37; KEGG: tte:TTE2800 conserved hypothetical protein; hypothetical protein 3224087 4115010 Rxyl_3214 Rubrobacter xylanophilus DSM 9941 hypothetical protein YP_645930.1 3223875 R 266117 CDS YP_645931.1 108805994 4115011 complement(3224087..3224431) 1 NC_008148.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: tte:TTE2801 RNase P protein component; ribonuclease P protein component 3224431 4115011 Rxyl_3215 Rubrobacter xylanophilus DSM 9941 ribonuclease P protein component YP_645931.1 3224087 R 266117 CDS YP_645932.1 108805995 4115012 complement(3224435..3224569) 1 NC_008148.1 PFAM: ribosomal protein L34; KEGG: mhp:MHP7448_0678 50S ribosomal protein L34; 50S ribosomal protein L34 3224569 4115012 Rxyl_3216 Rubrobacter xylanophilus DSM 9941 50S ribosomal protein L34 YP_645932.1 3224435 R 266117 CDS YP_645933.1 108805996 4115013 3224940..3225743 1 NC_008148.1 PFAM: transcriptional regulator TrmB ATP-binding region, ATPase-like; KEGG: sma:SAV2396 putative potassium transport system, two-component system sensor kinase; transcriptional regulator TrmB 3225743 4115013 Rxyl_3217 Rubrobacter xylanophilus DSM 9941 transcriptional regulator TrmB YP_645933.1 3224940 D 266117 CDS