-- dump date 20120504_160906 -- class Genbank::CDS -- table cds_note -- id note YP_165274.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_165275.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 YP_165276.1 identified by similarity to SP:O05189; match to protein family HMM PF01656 YP_165277.1 identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_165278.1 identified by similarity to GB:AAN55061.1; match to protein family HMM PF04304 YP_165279.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_165280.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_165281.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_165282.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_165283.1 identified by match to protein family HMM PF01025 YP_165284.1 This protein performs the mismatch recognition step during the DNA repair process YP_165285.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_165286.1 identified by similarity to SP:P05054; match to protein family HMM PF00294 YP_165287.1 identified by similarity to SP:Q93P63; match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_165289.1 identified by match to protein family HMM PF02036 YP_165290.1 identified by similarity to GB:BAC49462.1 YP_165291.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_165293.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_165294.1 identified by match to protein family HMM PF01627 YP_165295.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_165296.1 identified by match to protein family HMM PF00293 YP_165297.1 identified by similarity to SP:P45803; match to protein family HMM PF01430 YP_165298.1 identified by match to protein family HMM PF00293 YP_165299.1 identified by match to protein family HMM PF01743 YP_165300.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_165301.1 identified by similarity to GB:BAB70471.1; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_165302.1 identified by similarity to SP:P55135 YP_165303.1 identified by similarity to GB:CAD24429.1; match to protein family HMM PF00520 YP_165304.1 identified by match to protein family HMM PF03734 YP_165306.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165307.1 identified by similarity to GB:AAM48703.1 YP_165308.1 identified by match to protein family HMM PF02485 YP_165309.1 identified by similarity to GB:CAC46616.1 YP_165310.1 identified by similarity to GB:CAC46616.1 YP_165311.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_165312.1 identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331 YP_165314.1 identified by similarity to PIR:E82361 YP_165315.1 identified by similarity to SP:P05050; match to protein family HMM PF03171 YP_165316.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_165317.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_165318.1 identified by similarity to SP:P76422; match to protein family HMM TIGR00097 YP_165319.1 identified by match to protein family HMM PF01266 YP_165320.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_165321.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_165322.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_165323.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_165324.1 Assignment based partly on membership in ABC transporter gene cluster. YP_165325.1 identified by match to protein family HMM PF03070 YP_165326.1 identified by match to protein family HMM PF00005 YP_165327.1 identified by match to protein family HMM PF00528 YP_165328.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_165329.1 identified by match to protein family HMM PF00691 YP_165331.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_165332.1 identified by match to protein family HMM PF00639 YP_165333.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_165334.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586 YP_165335.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_165336.1 identified by similarity to GB:AAK22031.1; match to protein family HMM PF04296 YP_165337.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_165338.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_165340.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_165341.1 Involved in ubiquinone biosynthesis YP_165343.1 identified by match to protein family HMM PF00795 YP_165344.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_165345.1 identified by similarity to GB:AAK22815.1 YP_165346.1 identified by similarity to GB:CAE26039.1 YP_165347.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_165349.1 identified by match to protein family HMM PF03734 YP_165351.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419 YP_165352.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_165353.1 identified by similarity to GB:AAM48706.1; match to protein family HMM PF00005 YP_165354.1 identified by match to protein family HMM PF03968 YP_165355.1 identified by similarity to GB:AAM48708.1 YP_165356.1 identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_165357.1 identified by match to protein family HMM PF01612 YP_165358.1 catalyzes the formation of betaine from betaine aldehyde YP_165359.1 identified by similarity to GB:CAE29577.1 YP_165360.1 identified by similarity to GB:CAC41759.1 YP_165362.1 identified by similarity to GB:BAB51963.1 YP_165363.1 identified by similarity to GB:CAE32220.1 YP_165364.1 identified by similarity to GB:CAE37570.1 YP_165365.1 identified by match to protein family HMM PF00581 YP_165366.1 identified by similarity to SP:P36928 YP_165367.1 identified by similarity to SP:P21369; match to protein family HMM PF00857 YP_165368.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_165369.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_165370.1 identified by match to protein family HMM PF00892 YP_165371.1 identified by match to protein family HMM PF00171 YP_165372.1 identified by match to protein family HMM PF00005 YP_165373.1 identified by match to protein family HMM PF00528 YP_165374.1 identified by match to protein family HMM PF00528 YP_165375.1 identified by match to protein family HMM PF00496 YP_165376.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_165377.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_165378.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_165379.1 identified by match to protein family HMM PF01360 YP_165380.1 identified by similarity to SP:Q9A321; match to protein family HMM PF03883 YP_165381.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_165382.1 identified by similarity to GB:AAR33383.1 YP_165383.1 identified by match to protein family HMM PF01061 YP_165384.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061 YP_165385.1 identified by similarity to PIR:H82993 YP_165386.1 identified by match to protein family HMM PF07167 YP_165387.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_165389.1 Catalyses the synthesis of acetylphosphate from acetyl-CoA and inorganic phosphate YP_165390.1 identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016 YP_165392.1 identified by match to protein family HMM PF01037 YP_165393.1 identified by match to protein family HMM PF00892 YP_165394.1 identified by match to protein family HMM PF02325 YP_165395.1 identified by match to protein family HMM PF07690 YP_165396.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_165397.1 identified by similarity to PIR:F98281 YP_165398.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697 YP_165399.1 identified by similarity to GB:AAM35138.1; match to protein family HMM PF00472 YP_165400.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_165401.1 identified by match to protein family HMM PF03576 YP_165402.1 identified by match to protein family HMM PF00034 YP_165403.1 identified by similarity to SP:P26173; match to protein family HMM PF00293; match to protein family HMM TIGR02150 YP_165404.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_165405.1 identified by match to protein family HMM PF00024; match to protein family HMM PF01835; match to protein family HMM PF07703 YP_165406.1 identified by similarity to GB:BAB50328.1 YP_165407.1 identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02073 YP_165408.1 identified by similarity to GB:BAC47727.1 YP_165409.1 identified by similarity to PIR:D97630; match to protein family HMM TIGR02226 YP_165410.1 identified by similarity to GB:AAN30463.1 YP_165412.1 identified by similarity to PIR:E83277; match to protein family HMM PF06938 YP_165413.1 identified by match to protein family HMM PF01381 YP_165414.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_165415.1 identified by match to protein family HMM PF00037 YP_165416.1 identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982 YP_165417.1 identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM TIGR01934 YP_165418.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_165419.1 identified by similarity to SP:P14604; match to protein family HMM PF00378 YP_165420.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_165421.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_165422.1 binds the polymerase to DNA and acts as a sliding clamp YP_165423.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_165424.1 identified by match to protein family HMM PF01810 YP_165425.1 identified by match to protein family HMM PF00440 YP_165426.1 identified by similarity to SP:P45245; match to protein family HMM PF02525 YP_165427.1 negatively supercoils closed circular double-stranded DNA YP_165428.1 identified by similarity to SP:P38035; match to protein family HMM PF00158 YP_165429.1 identified by match to protein family HMM PF05731 YP_165430.1 identified by similarity to PIR:D75521 YP_165431.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_165432.1 identified by similarity to GB:AAQ59886.1 YP_165433.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_165434.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724 YP_165436.1 identified by similarity to SP:O87278; match to protein family HMM PF00724 YP_165437.1 identified by match to protein family HMM PF06253 YP_165438.1 identified by match to protein family HMM PF00440 YP_165439.1 identified by match to protein family HMM PF01464 YP_165440.1 membrane protein involved in the flagellar export apparatus YP_165441.1 identified by similarity to SP:P35537; similarity to SP:Q45975; match to protein family HMM PF01311 YP_165442.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_165445.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod YP_165446.1 required for the assembly of the flagellar basal body P-ring YP_165447.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_165448.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of this and other flagella genes YP_165449.1 identified by similarity to SP:P35535; match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_165450.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_165451.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_165452.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_165453.1 identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026 YP_165454.1 identified by match to protein family HMM PF01970 YP_165456.1 identified by match to protein family HMM PF03401 YP_165457.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_165458.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_165459.1 identified by similarity to GB:AAM42620.1 YP_165460.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_165461.1 identified by similarity to SP:P09349 YP_165462.1 identified by similarity to SP:O07884; match to protein family HMM PF00460; match to protein family HMM PF06429 YP_165463.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_165465.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_165466.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_165467.1 identified by similarity to SP:Q03593; match to protein family HMM PF01052 YP_165469.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_165470.1 identified by similarity to SP:P34008; match to protein family HMM PF03748 YP_165471.1 identified by similarity to GB:AAF27716.1 YP_165472.1 identified by similarity to PIR:E83956 YP_165473.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_165475.1 identified by similarity to GB:AAO56546.1; match to protein family HMM PF03972 YP_165476.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165477.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01571 YP_165478.1 identified by match to protein family HMM PF02690 YP_165479.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_165480.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165481.1 identified by similarity to PIR:G97622 YP_165482.1 identified by similarity to GB:AAM40439.1 YP_165484.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_165485.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_165487.1 identified by match to protein family HMM PF00924 YP_165488.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_165489.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_165490.1 identified by similarity to GB:CAE38612.1 YP_165491.1 identified by similarity to SP:P30234; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_165492.1 identified by match to protein family HMM PF01037 YP_165493.1 identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976 YP_165496.1 identified by similarity to GB:AAF15370.1; match to protein family HMM PF00353 YP_165497.1 identified by match to protein family HMM PF00892 YP_165498.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_165499.1 identified by similarity to GB:AAK25258.1 YP_165500.1 identified by match to protein family HMM PF00107 YP_165501.1 identified by similarity to SP:P40783; match to protein family HMM PF00107 YP_165502.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_165503.1 identified by similarity to GB:BAB51119.1 YP_165504.1 identified by match to protein family HMM PF00171 YP_165505.1 identified by similarity to SP:P37965; match to protein family HMM PF03009 YP_165506.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_165507.1 identified by similarity to SP:P10906; match to protein family HMM PF00528 YP_165508.1 identified by similarity to SP:P10905; match to protein family HMM PF00528 YP_165509.1 identified by similarity to SP:P10904; match to protein family HMM PF01547 YP_165510.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165511.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_165512.1 identified by similarity to GB:BAA96458.1; match to protein family HMM PF00348 YP_165513.1 identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 YP_165514.1 identified by match to protein family HMM PF00850 YP_165515.1 identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_165516.1 identified by similarity to SP:P31078; match to protein family HMM PF01047 YP_165517.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_165518.1 identified by similarity to GB:AAC38562.1; match to protein family HMM PF02566 YP_165519.1 identified by match to protein family HMM PF01047 YP_165520.1 identified by match to protein family HMM PF00127 YP_165521.1 identified by similarity to PIR:A96030 YP_165522.1 identified by match to protein family HMM PF00165 YP_165523.1 identified by similarity to GB:CAE32384.1 YP_165524.1 identified by similarity to SP:P42251; match to protein family HMM PF00245; match to protein family HMM TIGR01409 YP_165525.1 identified by match to protein family HMM PF00892 YP_165526.1 identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708 YP_165527.1 identified by match to protein family HMM PF00892 YP_165528.1 identified by match to protein family HMM PF02515 YP_165529.1 identified by similarity to GB:AAA99820.1; match to protein family HMM PF03547 YP_165530.1 identified by match to protein family HMM PF01966 YP_165531.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_165532.2 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_165533.1 identified by match to protein family HMM PF04299 YP_165534.1 identified by match to protein family HMM PF02798 YP_165535.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416 YP_165536.1 identified by similarity to SP:P05418; match to protein family HMM PF00032; match to protein family HMM PF00033 YP_165537.1 identified by similarity to SP:Q02760; match to protein family HMM PF02167 YP_165538.1 identified by similarity to GB:BAC74098.1 YP_165539.1 identified by match to protein family HMM PF01292 YP_165540.1 identified by match to protein family HMM PF00196 YP_165541.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_165542.1 identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652 YP_165543.1 identified by similarity to GB:AAC43509.1 YP_165544.1 identified by similarity to GB:BAC93558.1 YP_165546.1 identified by similarity to GB:CAE28560.1; match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_165547.1 identified by similarity to SP:P46538; match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_165550.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_165551.1 identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_165552.1 identified by match to protein family HMM PF00149 YP_165553.1 identified by match to protein family HMM PF01810 YP_165554.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_165555.1 identified by match to protein family HMM TIGR01730 YP_165556.1 identified by match to protein family HMM PF00873 YP_165557.1 identified by match to protein family HMM PF00293 YP_165558.1 identified by similarity to GB:BAC46756.1 YP_165559.1 identified by similarity to GB:BAC46757.1; match to protein family HMM PF02622 YP_165560.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_165561.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_165562.1 identified by match to protein family HMM PF00753 YP_165564.1 identified by match to protein family HMM PF03009 YP_165565.1 identified by similarity to GB:CAE78911.1 YP_165568.1 identified by match to protein family HMM PF03591 YP_165569.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_165570.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_165571.1 identified by similarity to SP:P32125; match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_165572.1 identified by similarity to GB:AAK23994.1 YP_165573.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum YP_165575.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_165576.1 identified by match to protein family HMM PF00903 YP_165577.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR01950 YP_165578.1 identified by similarity to GB:AAM41091.1; match to protein family HMM TIGR02118 YP_165579.1 identified by similarity to SP:Q16134; match to protein family HMM PF05187 YP_165580.1 identified by similarity to GB:CAE26481.1; match to protein family HMM PF00515 YP_165581.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 YP_165582.1 identified by similarity to GB:CAD24417.1; match to protein family HMM PF00348 YP_165583.1 identified by similarity to GB:CAC45419.1 YP_165584.1 identified by similarity to GB:CAD24416.1 YP_165585.1 identified by similarity to PIR:AE3289; match to protein family HMM PF04325 YP_165586.1 identified by match to protein family HMM PF00892 YP_165587.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_165588.1 identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829 YP_165589.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_165590.1 identified by match to protein family HMM PF00563 YP_165591.1 identified by similarity to GB:BAB48523.1 YP_165593.1 identified by similarity to SP:P14532; match to protein family HMM PF03150 YP_165594.1 identified by similarity to SP:P43221 YP_165595.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_165597.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_165599.1 identified by match to protein family HMM TIGR02098 YP_165600.1 identified by similarity to SP:P10115; match to protein family HMM PF00005 YP_165601.1 identified by match to protein family HMM PF02687 YP_165602.1 identified by match to protein family HMM PF01553 YP_165603.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 YP_165606.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_165607.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_165608.1 identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656 YP_165609.1 identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_165610.1 catalyzes the interconversion of succinyl-CoA and succinate YP_165612.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_165613.1 identified by match to protein family HMM PF01925 YP_165614.1 identified by similarity to GB:CAC45660.1 YP_165615.1 identified by similarity to SP:P77770 YP_165616.1 identified by match to protein family HMM PF07298 YP_165617.1 identified by similarity to PIR:AE3561 YP_165618.1 identified by similarity to GB:AAK25618.1 YP_165619.1 identified by similarity to GB:BAC61369.1 YP_165620.1 identified by match to protein family HMM PF00092 YP_165621.1 identified by match to protein family HMM PF01127 YP_165622.1 identified by similarity to GB:AAC17941.1 YP_165623.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_165624.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_165625.1 identified by match to protein family HMM PF00353 YP_165627.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_165628.1 identified by similarity to PIR:G97525 YP_165629.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_165630.1 identified by match to protein family HMM PF00816 YP_165631.1 identified by similarity to SP:Q49115; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641 YP_165632.1 identified by similarity to SP:P00482; match to protein family HMM PF01553 YP_165633.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR01751 YP_165634.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_165635.1 identified by match to protein family HMM PF00765 YP_165637.1 identified by similarity to GB:CAE26256.1 YP_165638.1 identified by match to protein family HMM PF01925 YP_165639.1 identified by match to protein family HMM PF02653 YP_165640.1 identified by match to protein family HMM PF02653 YP_165641.1 identified by match to protein family HMM PF00005 YP_165642.1 identified by match to protein family HMM PF02608 YP_165643.1 identified by similarity to SP:P09453; match to protein family HMM PF00583 YP_165644.1 identified by match to protein family HMM PF00814 YP_165645.1 identified by match to protein family HMM PF01106 YP_165646.1 identified by similarity to SP:P41407; match to protein family HMM PF02525 YP_165647.1 identified by similarity to GB:BAC89223.1; match to protein family HMM PF07336 YP_165648.1 identified by match to protein family HMM PF01323 YP_165649.1 identified by match to protein family HMM PF00582 YP_165651.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_165652.1 identified by match to protein family HMM PF01037 YP_165653.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_165654.1 identified by similarity to SP:P47233; match to protein family HMM PF00903 YP_165655.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_165656.1 identified by match to protein family HMM PF01694 YP_165657.1 identified by similarity to GB:CAE09894.1 YP_165658.1 identified by match to protein family HMM PF00027 YP_165659.1 identified by similarity to SP:O05467; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_165660.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_165661.1 identified by similarity to GB:BAC45936.1 YP_165662.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_165663.1 identified by similarity to GB:AAN66948.1; match to protein family HMM PF02021 YP_165664.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_165665.1 identified by similarity to SP:P45049; match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_165666.1 identified by similarity to GB:CAD13614.1 YP_165667.1 identified by match to protein family HMM PF00300 YP_165668.1 identified by match to protein family HMM PF02283 YP_165669.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production YP_165670.1 identified by similarity to PIR:E83058 YP_165671.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_165672.1 catalyzes the formation of dUMP from dUTP YP_165673.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_165676.1 identified by match to protein family HMM PF01053 YP_165677.1 identified by similarity to SP:P27236; match to protein family HMM PF01432 YP_165678.1 identified by match to protein family HMM PF02826 YP_165679.1 identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_165680.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_165681.1 identified by similarity to GB:CAE53834.1 YP_165682.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_165683.1 functions in MreBCD complex in some organisms YP_165685.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_165686.1 identified by match to protein family HMM PF01381 YP_165687.1 identified by match to protein family HMM PF07690 YP_165688.1 identified by match to protein family HMM PF02493 YP_165689.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_165691.1 identified by similarity to GB:AAA86752.1; match to protein family HMM PF01266 YP_165692.1 identified by match to protein family HMM PF00753; match to protein family HMM TIGR01409 YP_165693.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_165694.1 identified by similarity to PIR:E82090 YP_165695.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_165696.1 identified by match to protein family HMM PF02687 YP_165698.1 identified by similarity to SP:P29679 YP_165699.1 identified by similarity to PIR:AC2205 YP_165706.1 identified by similarity to GB:BAC62291.1 YP_165708.1 identified by similarity to GB:AAQ60337.1 YP_165709.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_165712.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_165714.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_165715.1 identified by similarity to PIR:AD3572 YP_165716.1 identified by similarity to GB:AAM06297.1 YP_165718.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_165720.1 identified by similarity to GB:BAC47480.1 YP_165728.1 identified by match to protein family HMM PF01243 YP_165729.1 identified by similarity to SP:P21501 YP_165731.1 identified by similarity to SP:P16685 YP_165732.1 identified by similarity to SP:P16686 YP_165733.1 identified by similarity to SP:P16687 YP_165734.1 identified by similarity to SP:P16688 YP_165735.1 identified by similarity to SP:P16678 YP_165736.1 identified by similarity to SP:P16679 YP_165737.1 identified by similarity to SP:P16690 YP_165738.1 identified by similarity to GB:AAN29788.1 YP_165739.1 identified by similarity to SP:P16689 YP_165742.1 identified by similarity to GB:AAF61102.1 YP_165746.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_165747.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_165748.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_165749.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_165750.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_165752.1 identified by similarity to GB:AAO08434.1 YP_165753.1 identified by similarity to GB:CAE79871.1 YP_165754.1 identified by similarity to GB:BAC74954.1 YP_165755.1 one of the stabilizing components for the large ribosomal subunit YP_165756.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_165757.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_165758.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_165759.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_165760.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_165761.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_165762.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_165763.1 binds 5S rRNA along with protein L5 and L25 YP_165764.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_165765.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_165767.1 identified by similarity to SP:P19946 YP_165768.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_165769.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_165770.1 identified by similarity to PIR:AB2876 YP_165771.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_165772.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_165773.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_165774.1 is a component of the macrolide binding site in the peptidyl transferase center YP_165775.1 identified by similarity to GB:BAC52410.1 YP_165778.1 identified by similarity to SP:P23851 YP_165780.1 identified by similarity to GB:BAC50629.1 YP_165782.1 identified by similarity to SP:Q52664 YP_165783.1 identified by similarity to SP:Q52665 YP_165784.1 identified by similarity to SP:Q52666 YP_165786.1 identified by similarity to GB:BAB48651.1 YP_165788.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_165792.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_165794.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_165796.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_165798.1 identified by similarity to GB:CAE35356.1 YP_165800.2 in Escherichia coli transcription of this gene is enhanced by polyamines YP_165802.1 identified by similarity to SP:P17239 YP_165803.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_165804.1 identified by similarity to GB:CAD14035.1 YP_165806.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_165808.1 identified by similarity to PIR:H83501 YP_165810.1 identified by similarity to PIR:G97668 YP_165811.1 identified by similarity to PIR:E95936 YP_165812.1 identified by similarity to PIR:B97670 YP_165816.1 identified by similarity to GB:BAB50184.1 YP_165819.1 identified by similarity to SP:P42063 YP_165820.1 identified by similarity to SP:P42062 YP_165821.1 identified by similarity to GB:BAB50197.1 YP_165822.1 identified by similarity to GB:BAB50200.1 YP_165823.1 identified by similarity to SP:Q12390 YP_165828.1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_165830.1 identified by similarity to GB:CAD14776.1 YP_165833.1 identified by similarity to GB:AAQ87470.1 YP_165836.1 identified by similarity to GB:AAS05297.1 YP_165837.1 identified by similarity to PIR:D83286 YP_165838.1 identified by similarity to GB:BAB16296.1 YP_165839.1 identified by similarity to GB:BAB16297.1 YP_165841.1 identified by similarity to GB:CAB95889.1 YP_165844.1 identified by similarity to SP:Q06191 YP_165846.1 identified by similarity to PIR:T00580 YP_165847.1 identified by similarity to GB:CAC46788.1 YP_165851.1 identified by similarity to SP:P37735 YP_165854.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_165855.1 identified by similarity to SP:P50199 YP_165862.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_165863.1 identified by similarity to PIR:AH0077 YP_165864.1 identified by similarity to GB:BAC62948.1 YP_165866.1 identified by similarity to PIR:C95874 YP_165867.1 identified by similarity to GB:CAB71312.1 YP_165868.1 Assignment partly based on location in sugar transporter operon. YP_165869.1 Assignment partly based on location in sugar transport operon. YP_165870.1 Assignment partly based on location in sugar transport operon. YP_165871.1 Assignment partly based on location in sugar transport operon.; identified by similarity to PIR:T46751 YP_165872.1 Assignment partly based on location in sugar transport operon. YP_165873.1 identified by similarity to GB:BAB48242.1 YP_165874.1 identified by similarity to SP:P06555 YP_165875.1 identified by similarity to GB:CAD73596.1 YP_165879.1 identified by similarity to GB:BAC91031.1 YP_165883.1 identified by similarity to PIR:B75629 YP_165885.1 identified by similarity to GB:AAN56319.1 YP_165887.1 Involved in the metabolism of aromatic amino acids YP_165888.1 identified by similarity to SP:P54422 YP_165893.1 identified by similarity to GB:AAO90814.1 YP_165896.1 identified by similarity to GB:AAP57703.1 YP_165899.1 identified by similarity to GB:BAC48747.1 YP_165900.1 identified by similarity to GB:BAC48748.1 YP_165901.1 identified by similarity to GB:AAQ61228.1 YP_165904.1 Assignment based partly on membership in sugar ABC transporter operon YP_165905.1 Assignment based partly on membership in sugar ABC transporter operon YP_165907.1 identified by similarity to GB:CAB41849.1 YP_165908.1 identified by similarity to GB:CAA04470.2 YP_165909.1 identified by similarity to GB:CAA04469.1 YP_165910.1 identified by similarity to PIR:D95421 YP_165911.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_165916.1 identified by similarity to SP:P42062 YP_165917.1 identified by similarity to SP:P42063 YP_165918.1 identified by similarity to SP:P26905 YP_165919.1 identified by similarity to SP:P42065 YP_165920.1 identified by similarity to SP:Q89SJ8 YP_165921.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_165922.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_165923.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_165924.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_165926.1 identified by similarity to GB:BAB51085.1 YP_165927.1 identified by similarity to PIR:AH2953 YP_165928.1 identified by similarity to SP:Q9APM5 YP_165929.1 Assignment partly based on membership in taurine ABC transporter gene cluster.; identified by similarity to SP:Q47537 YP_165930.1 identified by similarity to SP:Q47538 YP_165931.1 identified by similarity to SP:Q47539 YP_165932.1 activates fatty acids by binding to coenzyme A YP_165933.1 identified by similarity to SP:Q9BSE5 YP_165934.1 identified by similarity to SP:O43708 YP_165936.1 identified by similarity to GB:CAE31393.1 YP_165941.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_165944.1 identified by similarity to GB:AAK24136.1 YP_165945.1 identified by similarity to GB:BAC48339.1 YP_165946.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_165947.1 identified by similarity to GB:AAD24211.1 YP_165948.1 identified by similarity to GB:AAL17673.1 YP_165951.1 identified by similarity to SP:P09833 YP_165952.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_165953.1 identified by similarity to SP:P37329 YP_165954.1 identified by similarity to SP:P46930 YP_165958.1 identified by similarity to SP:P42063 YP_165959.1 Assignment partly based on location in oligopeptide ABC transport gene cluster YP_165960.1 Assignment partly based on location in oligopeptide ABC transporter gene cluster.; identified by similarity to SP:Q9X4Y1 YP_165962.1 identified by similarity to GB:AAF98391.2 YP_165963.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_165964.1 identified by similarity to SP:P50350 YP_165966.1 identified by similarity to SP:O34483 YP_165970.1 identified by similarity to PIR:D82434 YP_165971.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_165972.1 identified by similarity to GB:AAK08138.1 YP_165973.1 identified by similarity to SP:P38974 YP_165974.1 identified by similarity to SP:P38975 YP_165977.1 identified by similarity to PIR:C98285 YP_165980.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_165982.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_165983.1 identified by similarity to GB:AAK22291.1 YP_165984.1 identified by similarity to SP:P09392; match to protein family HMM PF00455 YP_165985.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_165986.1 identified by similarity to GB:AAC36352.1; match to protein family HMM PF00561 YP_165987.1 identified by similarity to SP:P76086 YP_165988.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA YP_165989.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_165991.1 identified by similarity to SP:P37735; match to protein family HMM PF03480 YP_165992.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_165993.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_165994.1 identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_165995.1 identified by similarity to GB:AAF26285.1; match to protein family HMM TIGR02155 YP_165996.1 identified by match to protein family HMM PF00440 YP_165997.1 identified by similarity to GB:CAE30152.1 YP_165999.1 identified by similarity to PIR:C83621 YP_166000.1 identified by match to protein family HMM PF03098 YP_166002.1 identified by similarity to PIR:AE2995 YP_166003.1 identified by similarity to GB:CAE14641.1 YP_166004.1 identified by match to protein family HMM PF00211 YP_166006.1 identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160 YP_166007.1 identified by similarity to SP:P76080; match to protein family HMM PF01883; match to protein family HMM TIGR02159 YP_166008.1 identified by similarity to SP:P76079; match to protein family HMM PF05138; match to protein family HMM TIGR02158 YP_166009.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_166010.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_166011.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_166013.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_166014.1 identified by match to protein family HMM PF04199; match to protein family HMM TIGR01409 YP_166015.1 identified by match to protein family HMM PF00392 YP_166016.1 identified by match to protein family HMM PF00117 YP_166017.1 identified by match to protein family HMM PF00067 YP_166018.1 identified by match to protein family HMM PF00120 YP_166019.1 identified by match to protein family HMM PF00111 YP_166020.1 identified by match to protein family HMM TIGR01444 YP_166021.1 identified by match to protein family HMM PF01614 YP_166022.1 identified by match to protein family HMM PF03401 YP_166024.1 identified by match to protein family HMM PF01970 YP_166025.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_166026.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_166027.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_166028.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_166029.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_166030.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_166031.1 identified by similarity to SP:P94547; match to protein family HMM PF00501 YP_166032.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_166033.1 identified by similarity to SP:P16677; match to protein family HMM PF00005 YP_166034.1 identified by similarity to SP:P16682 YP_166035.1 identified by similarity to SP:P16683; match to protein family HMM PF00528 YP_166036.1 identified by similarity to PIR:H95946; match to protein family HMM PF00528 YP_166037.1 identified by similarity to SP:P26838; match to protein family HMM PF00132 YP_166039.1 identified by match to protein family HMM PF03061 YP_166040.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_166041.1 identified by match to protein family HMM PF00753; match to protein family HMM TIGR01409 YP_166042.1 identified by similarity to GB:AAQ61556.1 YP_166044.1 identified by match to protein family HMM PF00202; match to protein family HMM PF01551 YP_166045.1 identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873 YP_166046.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02044 YP_166047.1 identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_166048.1 identified by similarity to PIR:E83152; match to protein family HMM PF00106 YP_166049.1 identified by similarity to GB:BAC72444.1 YP_166050.1 identified by match to protein family HMM PF01758 YP_166051.1 identified by similarity to GB:AAS47561.1 YP_166052.1 identified by match to protein family HMM PF00440 YP_166053.1 identified by similarity to GB:AAC13371.1; match to protein family HMM PF00884 YP_166054.1 identified by similarity to PIR:T08074; match to protein family HMM PF00501 YP_166055.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_166056.1 identified by match to protein family HMM PF00293 YP_166057.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_166058.1 identified by similarity to GB:CAE25511.1 YP_166059.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_166061.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_166062.1 identified by similarity to GB:AAD29263.1 YP_166063.1 identified by similarity to GB:BAA01524.1; match to protein family HMM PF00144 YP_166064.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_166065.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_166066.1 identified by similarity to SP:P46454; match to protein family HMM PF01070 YP_166067.1 identified by match to protein family HMM PF01575 YP_166068.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_166069.1 identified by similarity to GB:AAN66362.1 YP_166070.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_166071.1 identified by similarity to GB:AAL18255.1; match to protein family HMM PF01124 YP_166072.1 identified by match to protein family HMM PF01979 YP_166073.1 identified by match to protein family HMM PF02515 YP_166074.1 identified by match to protein family HMM PF01047 YP_166075.1 identified by match to protein family HMM PF00005 YP_166076.1 identified by similarity to SP:P22730; match to protein family HMM PF00005 YP_166077.1 identified by match to protein family HMM PF02653 YP_166078.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF01094 YP_166079.1 identified by similarity to GB:AAR38363.1; match to protein family HMM PF06684 YP_166080.1 identified by similarity to GB:AAR38364.1; match to protein family HMM PF06684 YP_166081.1 identified by similarity to GB:AAR38365.1 YP_166082.1 identified by similarity to GB:AAR38366.1 YP_166083.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738 YP_166084.1 identified by match to protein family HMM PF00941 YP_166085.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166086.1 identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512 YP_166087.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_166088.1 identified by similarity to GB:AAC38443.1; match to protein family HMM PF04199 YP_166089.1 identified by similarity to GB:BAB48851.1 YP_166091.1 identified by match to protein family HMM PF02397 YP_166092.1 identified by similarity to SP:Q45409 YP_166093.1 identified by match to protein family HMM PF02706 YP_166094.1 identified by match to protein family HMM PF01943 YP_166095.1 identified by match to protein family HMM PF00534 YP_166096.1 identified by match to protein family HMM PF00535 YP_166099.1 identified by similarity to GB:AAG43513.1; match to protein family HMM PF01648 YP_166100.1 identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733 YP_166101.1 identified by match to protein family HMM PF00535 YP_166102.1 identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_166104.1 identified by similarity to GB:BAC55144.1; match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_166105.1 identified by match to protein family HMM PF01408 YP_166106.1 identified by match to protein family HMM PF00535 YP_166107.1 identified by match to protein family HMM PF00534 YP_166108.1 identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_166109.1 catalyzes the interconversion of D-xylose to D-xylulose YP_166110.1 identified by match to protein family HMM PF01263 YP_166111.1 identified by similarity to SP:Q49128 YP_166112.1 identified by match to protein family HMM PF01839 YP_166113.1 identified by similarity to SP:P16557; match to protein family HMM PF00480 YP_166114.1 identified by similarity to SP:P37387; match to protein family HMM PF00532 YP_166115.1 identified by similarity to SP:P37389; match to protein family HMM PF02653 YP_166116.1 identified by match to protein family HMM PF00005 YP_166118.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_166119.1 identified by match to protein family HMM PF01019 YP_166120.1 identified by similarity to GB:AAN29006.1; match to protein family HMM PF04357 YP_166121.1 identified by match to protein family HMM PF01103 YP_166122.1 identified by match to protein family HMM PF00034; match to protein family HMM PF06181 YP_166123.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166124.1 identified by match to protein family HMM PF00576 YP_166126.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_166127.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_166128.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800 YP_166129.1 identified by similarity to GB:BAB51632.1; match to protein family HMM PF06038 YP_166130.1 identified by similarity to GB:AAM05262.1 YP_166131.1 identified by similarity to SP:P23884; match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_166132.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_166133.1 identified by similarity to PIR:T36459 YP_166136.1 identified by similarity to GB:CAE26317.1 YP_166137.1 identified by match to protein family HMM PF03824 YP_166138.1 identified by match to protein family HMM PF00561 YP_166139.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_166140.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_166141.1 identified by match to protein family HMM PF00583 YP_166142.1 identified by match to protein family HMM PF00892 YP_166143.1 identified by similarity to GB:AAM73853.1 YP_166144.1 identified by similarity to SP:P16689; match to protein family HMM PF01979 YP_166145.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_166146.1 identified by similarity to SP:P09028; match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_166147.1 identified by similarity to GB:BAC52375.1; match to protein family HMM PF04325 YP_166148.1 identified by match to protein family HMM PF00011 YP_166149.1 identified by similarity to GB:AAK25555.1 YP_166150.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_166151.1 identified by similarity to PIR:AH1879 YP_166153.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis YP_166154.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00211 YP_166155.1 identified by similarity to GB:AAM35160.1 YP_166156.1 identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292 YP_166157.1 identified by similarity to SP:P37403; match to protein family HMM PF01037 YP_166158.1 identified by similarity to PIR:T03518 YP_166159.1 identified by similarity to GB:CAC46924.1; match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_166160.1 identified by similarity to GB:BAB49749.1; match to protein family HMM PF02636 YP_166161.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_166162.1 identified by similarity to GB:CAC46921.1; match to protein family HMM PF04380 YP_166163.1 identified by similarity to GB:CAE29805.1 YP_166164.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_166165.1 identified by similarity to SP:P37584; match to protein family HMM PF01588 YP_166166.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_166167.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_166168.1 identified by similarity to PIR:AB2631 YP_166169.1 identified by similarity to GB:AAS41921.1 YP_166170.1 identified by match to protein family HMM PF00903 YP_166171.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_166172.1 identified by match to protein family HMM PF01047 YP_166173.1 identified by match to protein family HMM TIGR01730 YP_166174.1 identified by match to protein family HMM PF00873 YP_166175.1 identified by similarity to PIR:D83152; match to protein family HMM PF00903 YP_166176.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_166177.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_166178.1 identified by similarity to GB:CAC47377.1 YP_166179.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_166182.1 Possibly an isoschizomer of M.MboI found in Moraxella bovis.; identified by match to protein family HMM PF05063 YP_166184.1 identified by match to protein family HMM PF00072 YP_166185.1 identified by similarity to GB:AAK52053.1; match to protein family HMM PF00903 YP_166186.1 identified by similarity to GB:BAB48740.1 YP_166188.1 identified by match to protein family HMM PF00881 YP_166190.1 identified by similarity to SP:Q9Z854; match to protein family HMM PF02594 YP_166192.1 identified by match to protein family HMM PF01435 YP_166193.1 identified by similarity to PIR:T27104; match to protein family HMM PF01205 YP_166196.1 identified by similarity to GB:AAO38330.1 YP_166197.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_166198.1 identified by match to protein family HMM PF05170 YP_166199.1 identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_166200.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_166202.1 identified by similarity to SP:P10640; match to protein family HMM PF00005 YP_166203.1 identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167 YP_166206.1 YghU; B2989; one of eight glutathione transferases from E. coli YP_166207.1 identified by similarity to PIR:E82434 YP_166208.1 identified by match to protein family HMM PF01979 YP_166209.1 identified by similarity to PIR:AI3454 YP_166210.1 identified by match to protein family HMM PF01061 YP_166212.1 identified by match to protein family HMM PF00892 YP_166213.1 identified by match to protein family HMM PF00376 YP_166214.1 identified by similarity to PIR:B86741 YP_166215.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_166216.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_166217.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_166218.1 identified by match to protein family HMM PF00583 YP_166219.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_166220.1 identified by match to protein family HMM PF01384 YP_166221.1 identified by match to protein family HMM PF00293 YP_166222.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_166223.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_166224.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970 YP_166225.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_166226.1 required for 70S ribosome assembly YP_166228.1 identified by match to protein family HMM PF04314 YP_166229.1 identified by match to protein family HMM PF02423 YP_166230.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_166231.1 identified by similarity to SP:P53433; match to protein family HMM PF01451 YP_166232.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166233.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_166235.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_166236.1 identified by similarity to SP:P39832; match to protein family HMM PF00950 YP_166237.1 identified by similarity to SP:P52648; match to protein family HMM PF00005 YP_166238.1 Part of a zinc ABC transporter gene cluster.; identified by similarity to SP:P32692 YP_166239.1 identified by similarity to SP:P39172; match to protein family HMM PF01297 YP_166240.1 identified by similarity to SP:P33015; match to protein family HMM PF04143 YP_166241.1 identified by match to protein family HMM PF01022 YP_166242.1 identified by similarity to GB:AAO11779.1 YP_166243.1 identified by similarity to GB:AAF99429.1; match to protein family HMM PF02683 YP_166244.1 identified by similarity to GB:CAB94378.1 YP_166245.1 identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034 YP_166246.1 with SoxZ catalyzes the oxidation of sulfur compounds YP_166247.1 identified by similarity to GB:CAB94381.1 YP_166248.1 identified by similarity to GB:AAF99434.1 YP_166249.1 identified by similarity to GB:CAA55824.2; match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01409 YP_166250.1 identified by similarity to PIR:T46965; match to protein family HMM PF00174; match to protein family HMM PF03404; match to protein family HMM TIGR01409 YP_166251.1 identified by similarity to PIR:T46966; match to protein family HMM PF00034 YP_166252.1 identified by match to protein family HMM PF00034 YP_166253.1 identified by similarity to GB:CAA55826.2 YP_166254.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_166255.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_166256.1 binds and unfolds substrates as part of the ClpXP protease YP_166257.1 identified by match to protein family HMM PF01042 YP_166258.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis YP_166259.1 identified by match to protein family HMM PF02470 YP_166260.1 identified by similarity to GB:AAN29832.1 YP_166261.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_166262.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_166263.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_166264.1 identified by match to protein family HMM PF00196 YP_166265.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_166266.1 identified by match to protein family HMM PF00501 YP_166267.1 identified by similarity to SP:O86034; match to protein family HMM PF00106 YP_166269.1 Assignment partly based on location in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00005 YP_166270.1 identified by similarity to SP:P22730; match to protein family HMM PF00005 YP_166271.1 identified by match to protein family HMM PF02653 YP_166272.1 identified by match to protein family HMM PF02653 YP_166273.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM TIGR01409 YP_166274.1 identified by match to protein family HMM PF01381 YP_166275.1 identified by match to protein family HMM PF00072 YP_166277.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_166279.1 identified by similarity to PIR:T10511; match to protein family HMM PF04273; match to protein family HMM TIGR01244 YP_166280.1 identified by match to protein family HMM PF04143 YP_166281.1 identified by match to protein family HMM PF04143 YP_166282.1 identified by match to protein family HMM PF00753 YP_166285.1 identified by similarity to GB:BAB50739.1 YP_166287.1 identified by match to protein family HMM PF00589 YP_166290.1 identified by similarity to GB:CAE33998.1 YP_166295.1 identified by similarity to GB:BAC45394.1 YP_166298.1 identified by match to protein family HMM PF00078 YP_166300.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_166301.1 identified by match to protein family HMM PF00589 YP_166304.1 identified by similarity to PIR:H75269 YP_166305.1 identified by similarity to PIR:AB1950 YP_166307.1 identified by similarity to GB:BAB50720.1 YP_166308.1 identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199 YP_166309.1 identified by similarity to GB:CAA74897.1; match to protein family HMM PF03279 YP_166310.1 identified by match to protein family HMM PF00069 YP_166312.1 identified by match to protein family HMM PF01476 YP_166313.1 identified by match to protein family HMM PF01476 YP_166314.1 identified by similarity to GB:AAS02340.1 YP_166319.1 identified by similarity to GB:CAE10435.1 YP_166321.1 proposed role in polysaccahride synthesis YP_166322.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_166323.1 identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_166324.1 identified by match to protein family HMM PF03401 YP_166326.1 identified by match to protein family HMM PF01970 YP_166327.1 identified by match to protein family HMM PF02080 YP_166328.1 identified by match to protein family HMM PF00881 YP_166329.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_166330.1 identified by similarity to SP:P94633; match to protein family HMM PF01810 YP_166331.1 identified by match to protein family HMM PF00892 YP_166332.1 identified by similarity to GB:AAM82654.1 YP_166333.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_166334.1 identified by similarity to SP:O69787; match to protein family HMM PF00884 YP_166335.1 identified by similarity to GB:CAC41724.1 YP_166336.1 identified by similarity to GB:CAE29266.1 YP_166337.1 identified by match to protein family HMM PF00440 YP_166339.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_166340.1 identified by similarity to GB:AAN33382.1; match to protein family HMM PF04325 YP_166341.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_166342.1 identified by similarity to GB:AAG42024.1; match to protein family HMM PF03795 YP_166343.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166344.1 identified by match to protein family HMM TIGR00710 YP_166345.1 identified by similarity to PIR:T42208; match to protein family HMM PF01039 YP_166346.1 identified by similarity to GB:BAC50887.1 YP_166348.1 identified by similarity to PIR:C98286 YP_166349.1 identified by similarity to GB:AAM43280.1 YP_166352.1 identified by similarity to SP:P14882; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_166356.1 MDM; functions in conversion of succinate to propionate YP_166357.1 identified by similarity to PIR:B75327 YP_166358.1 identified by similarity to SP:P21861; match to protein family HMM PF00583 YP_166359.1 identified by similarity to SP:P31680; match to protein family HMM PF00226 YP_166360.1 identified by match to protein family HMM PF03372 YP_166361.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166362.1 identified by similarity to GB:CAE33489.1; match to protein family HMM PF07286 YP_166363.1 identified by match to protein family HMM PF03480 YP_166364.1 Assignment based partly on membership in a TRAP-T gene trio.; identified by similarity to GB:CAE33493.1 YP_166365.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_166366.1 identified by similarity to GB:CAE33491.1 YP_166368.1 identified by match to protein family HMM PF02541 YP_166369.1 identified by similarity to GB:BAC49388.1 YP_166370.1 identified by match to protein family HMM PF01594 YP_166371.1 identified by similarity to PIR:T10512 YP_166372.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_166374.1 identified by similarity to SP:P75956; match to protein family HMM PF02687 YP_166375.1 identified by similarity to SP:P75957; match to protein family HMM PF00005 YP_166378.1 identified by match to protein family HMM PF00034 YP_166380.1 identified by similarity to PIR:D83497 YP_166381.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_166382.1 identified by match to protein family HMM PF04069 YP_166383.1 identified by similarity to SP:P46920; match to protein family HMM PF00005 YP_166384.1 identified by similarity to SP:P14176; match to protein family HMM PF00528 YP_166385.1 identified by match to protein family HMM PF07298 YP_166386.1 identified by similarity to PIR:AB3629 YP_166387.1 identified by match to protein family HMM PF00202 YP_166388.1 identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_166389.1 identified by match to protein family HMM PF01037 YP_166390.1 identified by match to protein family HMM PF04952 YP_166391.1 identified by similarity to SP:P55667 YP_166392.1 cyclodeaminase YP_166393.1 catalyzes the formation of 2-oxobutanoate from L-threonine; involved in ectoine utilization YP_166394.1 identified by match to protein family HMM PF01177 YP_166395.1 identified by match to protein family HMM PF00582 YP_166396.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_166397.1 identified by match to protein family HMM PF04290 YP_166398.1 identified by similarity to SP:P37735; match to protein family HMM PF03480 YP_166399.1 identified by match to protein family HMM PF00392 YP_166400.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186 YP_166402.1 identified by similarity to PIR:E82434; match to protein family HMM TIGR01409 YP_166403.1 identified by match to protein family HMM PF02629 YP_166405.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_166406.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_166407.1 identified by similarity to GB:BAC46085.1 YP_166408.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_166409.1 identified by similarity to GB:AAN29556.1 YP_166410.1 identified by similarity to GB:AAM73219.1 YP_166411.1 identified by match to protein family HMM PF00165 YP_166412.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_166413.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_166414.1 identified by similarity to PIR:A97666 YP_166415.1 identified by similarity to GB:BAB52792.1 YP_166416.1 identified by match to protein family HMM PF00202 YP_166417.1 identified by similarity to PIR:D95307 YP_166418.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_166419.1 identified by match to protein family HMM PF01070 YP_166420.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_166421.1 identified by match to protein family HMM PF00580 YP_166423.1 identified by match to protein family HMM PF00149 YP_166424.1 identified by similarity to GB:BAB50586.1; match to protein family HMM PF06568 YP_166425.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_166426.1 identified by similarity to SP:P60391; match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_166427.1 identified by similarity to GB:BAB48908.1 YP_166428.1 identified by similarity to SP:P11882; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_166429.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_166430.1 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_166431.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_166433.1 identified by similarity to PIR:AG2285; match to protein family HMM PF00515 YP_166434.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_166435.1 identified by similarity to PIR:E97432; match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_166436.1 identified by match to protein family HMM PF00892 YP_166437.1 identified by match to protein family HMM PF01638 YP_166438.1 identified by similarity to SP:P39100; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_166439.1 identified by similarity to GB:AAK24936.1 YP_166440.1 identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013 YP_166441.1 identified by similarity to SP:P16457; match to protein family HMM PF01098 YP_166442.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_166443.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_166444.1 identified by match to protein family HMM PF00324 YP_166445.1 identified by similarity to GB:BAC67841.1 YP_166447.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_166448.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_166449.1 identified by match to protein family HMM PF03799 YP_166450.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_166451.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_166452.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_166453.1 identified by similarity to SP:Q50985; match to protein family HMM PF03696 YP_166454.1 identified by match to protein family HMM TIGR00634 YP_166455.1 identified by match to protein family HMM PF00654 YP_166456.1 identified by match to protein family HMM PF07171; match to protein family HMM PF07364 YP_166457.1 identified by similarity to SP:P75797; match to protein family HMM PF00496 YP_166458.1 identified by match to protein family HMM PF00528 YP_166459.1 identified by similarity to SP:P42063; match to protein family HMM PF00528 YP_166460.1 Substrate assignment partly based on location in oligopeptide ABC transporter gene cluster.; identified by similarity to SP:P75796; match to protein family HMM PF00005 YP_166461.1 identified by similarity to PIR:I40762; match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_166462.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties YP_166464.1 identified by match to protein family HMM PF01381 YP_166465.1 identified by match to protein family HMM PF00589 YP_166466.1 identified by match to protein family HMM PF00589 YP_166469.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_166471.1 identified by similarity to GB:BAB66386.1 YP_166472.1 identified by similarity to GB:AAQ58890.1 YP_166474.1 identified by similarity to GB:AAQ58888.1 YP_166477.1 identified by similarity to PIR:T31014 YP_166479.1 identified by similarity to SP:P42505; match to protein family HMM PF00816 YP_166481.1 identified by similarity to GB:AAO28025.1 YP_166482.1 identified by similarity to GB:CAE15648.1 YP_166485.1 identified by match to protein family HMM PF01135 YP_166486.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_166487.1 identified by similarity to GB:AAK23300.1 YP_166488.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_166489.1 identified by similarity to GB:AAR38391.1 YP_166490.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_166491.1 identified by match to protein family HMM PF00664 YP_166492.1 identified by match to protein family HMM PF01571 YP_166493.1 identified by match to protein family HMM PF00535 YP_166494.1 identified by similarity to SP:P43671 YP_166495.1 identified by similarity to GB:AAQ60217.1; match to protein family HMM PF03886 YP_166498.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_166500.1 identified by match to protein family HMM TIGR01926 YP_166501.1 identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976 YP_166502.1 identified by match to protein family HMM PF02798 YP_166503.1 identified by match to protein family HMM PF00561 YP_166504.1 identified by similarity to GB:AAN30332.1 YP_166505.1 identified by similarity to SP:P37340; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_166506.1 identified by match to protein family HMM PF01047 YP_166507.1 identified by match to protein family HMM PF00892 YP_166509.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_166510.1 identified by match to protein family HMM PF01381 YP_166511.1 identified by match to protein family HMM PF03937 YP_166512.1 identified by match to protein family HMM PF01047 YP_166514.1 identified by similarity to GB:BAB50411.1 YP_166515.1 identified by match to protein family HMM PF00903 YP_166518.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_166520.1 identified by match to protein family HMM PF00313 YP_166521.1 identified by match to protein family HMM PF03960 YP_166523.1 identified by similarity to GB:AAK25219.1 YP_166524.1 identified by similarity to GB:CAE43198.1 YP_166525.1 identified by similarity to SP:Q92W37; match to protein family HMM PF05114 YP_166526.1 identified by similarity to GB:CAE31790.1 YP_166527.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_166528.1 identified by similarity to GB:BAC49624.1 YP_166529.1 identified by match to protein family HMM PF01022; match to protein family HMM PF05146 YP_166530.1 identified by similarity to GB:CAE25485.1 YP_166531.1 identified by similarity to GB:BAB47950.1 YP_166532.1 identified by match to protein family HMM PF00903 YP_166533.1 identified by similarity to GB:CAC41730.1 YP_166534.1 identified by match to protein family HMM PF00561 YP_166535.1 identified by similarity to PIR:D83123 YP_166536.1 identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_166537.1 identified by match to protein family HMM PF07167; match to protein family HMM TIGR01838 YP_166538.1 identified by similarity to GB:BAA77258.1 YP_166539.1 identified by match to protein family HMM TIGR01848 YP_166540.1 identified by match to protein family HMM PF01041 YP_166541.1 identified by match to protein family HMM PF00248 YP_166542.1 identified by match to protein family HMM PF00126 YP_166543.1 identified by match to protein family HMM PF00120 YP_166544.1 identified by match to protein family HMM PF00117 YP_166545.1 identified by match to protein family HMM PF00120 YP_166546.1 identified by similarity to GB:BAB91123.1; match to protein family HMM PF01266 YP_166547.1 identified by similarity to SP:P02912; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_166548.1 identified by similarity to PIR:T44455; match to protein family HMM PF00528 YP_166549.1 identified by similarity to SP:P35120; similarity to PIR:T44454; match to protein family HMM PF00497 YP_166550.1 identified by similarity to SP:P07109; match to protein family HMM PF00005 YP_166551.1 identified by similarity to PIR:F83007 YP_166552.1 identified by similarity to GB:CAC47662.1; match to protein family HMM PF07049 YP_166553.1 identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049 YP_166554.1 identified by match to protein family HMM PF01244 YP_166555.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_166556.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_166557.1 identified by similarity to SP:P97051; match to protein family HMM PF02979; match to protein family HMM TIGR01323 YP_166558.1 identified by similarity to SP:P97052 YP_166559.1 identified by similarity to GB:BAC49761.1 YP_166560.1 identified by similarity to PIR:H81075 YP_166561.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_166564.1 identified by match to protein family HMM PF04263 YP_166565.1 identified by match to protein family HMM PF00892 YP_166566.1 identified by similarity to SP:O53614; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_166567.1 identified by match to protein family HMM PF02798 YP_166569.1 identified by match to protein family HMM PF01047 YP_166570.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_166571.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01424 YP_166572.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_166573.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_166575.1 identified by similarity to GB:BAB48824.1 YP_166576.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_166578.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_166579.1 identified by match to protein family HMM PF04279 YP_166580.1 identified by match to protein family HMM PF00892 YP_166581.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_166583.1 identified by match to protein family HMM PF00487 YP_166585.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_166586.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_166587.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_166588.1 identified by match to protein family HMM PF00196; match to protein family HMM TIGR00229 YP_166590.1 identified by match to protein family HMM PF00111 YP_166593.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01325 YP_166594.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_166595.1 identified by similarity to GB:BAA31229.1; match to protein family HMM PF02386 YP_166596.1 identified by match to protein family HMM PF01471 YP_166597.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_166598.1 identified by match to protein family HMM TIGR01444 YP_166599.1 identified by similarity to SP:P19933; match to protein family HMM PF03616; match to protein family HMM TIGR00210 YP_166600.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_166601.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_166602.1 identified by similarity to SP:P50739 YP_166603.1 identified by match to protein family HMM PF00394 YP_166604.1 identified by match to protein family HMM TIGR00526 YP_166605.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_166606.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_166607.1 identified by match to protein family HMM PF00892 YP_166608.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_166609.1 identified by match to protein family HMM PF01037 YP_166610.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_166611.1 identified by match to protein family HMM PF00392 YP_166612.1 identified by match to protein family HMM PF00266 YP_166613.1 identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01988 YP_166615.1 identified by similarity to GB:BAB81303.1 YP_166616.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993 YP_166617.1 identified by match to protein family HMM PF00392 YP_166618.1 identified by match to protein family HMM PF00535; match to protein family HMM PF05157 YP_166619.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_166620.1 identified by match to protein family HMM PF02637 YP_166621.1 identified by match to protein family HMM PF02153 YP_166622.1 identified by similarity to GB:BAB50627.1 YP_166623.1 identified by similarity to PIR:E98182 YP_166625.1 identified by similarity to SP:P33517; match to protein family HMM PF00115 YP_166626.1 identified by match to protein family HMM PF01047 YP_166627.1 identified by match to protein family HMM TIGR01409 YP_166628.1 identified by match to protein family HMM PF01230 YP_166629.1 identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_166630.1 identified by similarity to GB:BAC51348.1; match to protein family HMM PF00196; match to protein family HMM PF00561 YP_166631.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_166632.1 identified by match to protein family HMM PF01323 YP_166633.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_166634.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_166635.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00353 YP_166636.1 identified by match to protein family HMM PF00165 YP_166637.1 identified by similarity to GB:AAK38164.1 YP_166638.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_166639.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_166640.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_166641.1 identified by match to protein family HMM PF05853 YP_166642.1 identified by match to protein family HMM PF00202 YP_166644.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_166645.1 identified by similarity to GB:BAB53930.1 YP_166646.1 identified by match to protein family HMM PF00264 YP_166648.1 identified by similarity to GB:BAD02216.1 YP_166649.1 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_166650.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_166651.1 identified by match to protein family HMM PF01244 YP_166652.1 identified by match to protein family HMM PF01258 YP_166654.1 identified by match to protein family HMM PF01432 YP_166655.1 identified by match to protein family HMM PF00561 YP_166656.1 identified by match to protein family HMM PF02036 YP_166657.1 identified by match to protein family HMM PF00515 YP_166658.1 identified by match to protein family HMM PF00271 YP_166659.1 identified by match to protein family HMM PF01479 YP_166660.1 identified by match to protein family HMM PF00037 YP_166661.1 identified by match to protein family HMM PF02559 YP_166662.1 identified by match to protein family HMM PF00520 YP_166663.1 identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317 YP_166664.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_166665.1 identified by similarity to SP:P03819; match to protein family HMM PF02254; match to protein family HMM TIGR00932 YP_166666.1 identified by match to protein family HMM PF01037 YP_166667.1 identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_166670.1 identified by similarity to SP:Q57099; match to protein family HMM PF04402 YP_166671.1 identified by similarity to GB:AAB84282.1 YP_166672.1 identified by similarity to GB:BAB68505.1; match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_166673.1 identified by match to protein family HMM PF00581 YP_166674.1 identified by match to protein family HMM PF00248 YP_166675.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_166676.1 identified by match to protein family HMM PF05853 YP_166677.1 Converts (S)-3-hydroxyacyl-CoA to 3-oxyacyl-CoA; may also act as a thioesterase YP_166678.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_166679.1 identified by similarity to GB:BAC50099.1 YP_166680.1 identified by match to protein family HMM PF01381 YP_166681.1 identified by similarity to PIR:E84256 YP_166682.1 identified by match to protein family HMM PF00487 YP_166683.1 identified by match to protein family HMM PF00892 YP_166684.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_166686.1 identified by match to protein family HMM PF00106 YP_166687.1 identified by match to protein family HMM PF04199 YP_166688.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01796 YP_166689.1 identified by similarity to GB:BAC48694.1 YP_166690.1 identified by match to protein family HMM PF00501 YP_166691.1 identified by match to protein family HMM PF00866 YP_166692.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_166693.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175 YP_166694.1 identified by match to protein family HMM PF01047 YP_166695.1 identified by match to protein family HMM PF03480 YP_166697.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_166698.1 identified by match to protein family HMM PF03061 YP_166699.1 identified by match to protein family HMM PF01047 YP_166700.1 identified by similarity to SP:O07835; match to protein family HMM PF02775 YP_166701.1 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. YP_166702.1 identified by similarity to GB:BAC48692.1 YP_166703.1 identified by match to protein family HMM PF00691 YP_166704.1 identified by match to protein family HMM PF06808 YP_166706.1 identified by match to protein family HMM PF03480 YP_166707.1 identified by similarity to SP:Q44297 YP_166708.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_166709.1 identified by match to protein family HMM PF00155 YP_166710.1 identified by similarity to GB:AAF19054.1; match to protein family HMM PF00890 YP_166711.1 identified by similarity to SP:Q56062 YP_166712.1 identified by match to protein family HMM PF00857 YP_166713.1 identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378 YP_166714.1 identified by similarity to SP:Q01263; match to protein family HMM PF02538 YP_166716.1 identified by match to protein family HMM PF00392 YP_166717.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_166718.1 identified by similarity to SP:P30126; match to protein family HMM PF00694; match to protein family HMM TIGR00171 YP_166719.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_166720.1 identified by similarity to SP:P40685 YP_166721.1 identified by match to protein family HMM PF00106 YP_166722.1 identified by similarity to GB:AAQ64061.1 YP_166723.1 identified by similarity to PIR:F97597 YP_166724.1 identified by similarity to SP:P30010; match to protein family HMM PF02353 YP_166725.1 identified by similarity to GB:AAO56021.1 YP_166726.1 identified by similarity to SP:P96792 YP_166727.1 identified by similarity to GB:AAN56374.1 YP_166729.1 identified by match to protein family HMM PF00196 YP_166730.1 catalyzes the formation of indole-3-acetic acid from indole-3-acetamide YP_166731.1 identified by similarity to GB:BAA11039.1 YP_166732.1 identified by match to protein family HMM PF02653 YP_166733.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_166734.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00005 YP_166735.1 This may represent a duplication of NahD in which the N-terminus copy has diverged more from NahD than the C-terminus copy.; identified by match to protein family HMM PF01323 YP_166736.1 identified by match to protein family HMM PF00005 YP_166737.1 identified by match to protein family HMM PF02687 YP_166738.1 identified by match to protein family HMM TIGR01730 YP_166739.1 identified by similarity to SP:P14407; match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_166740.1 identified by match to protein family HMM PF00561 YP_166741.1 identified by similarity to SP:P27507; match to protein family HMM PF04055; match to protein family HMM TIGR02109 YP_166742.1 identified by similarity to SP:P27506; match to protein family HMM PF05402 YP_166743.1 Required in the synthesis of PPQ, but its exact function is unknown YP_166744.1 possibly involved in transport of pyrroloquinoline quinone transport YP_166745.1 identified by match to protein family HMM TIGR02107 YP_166746.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_166747.1 identified by similarity to GB:AAL30776.1 YP_166748.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_166749.1 identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011 YP_166750.1 identified by match to protein family HMM PF00034 YP_166751.1 identified by match to protein family HMM PF01061 YP_166752.1 identified by match to protein family HMM PF00005 YP_166753.1 identified by similarity to PIR:D95864 YP_166754.1 identified by similarity to GB:AAM77056.1 YP_166755.1 identified by similarity to PIR:B95864 YP_166756.1 identified by similarity to GB:AAC79658.1 YP_166758.1 identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240 YP_166759.1 identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_166760.1 identified by similarity to SP:P19913; match to protein family HMM PF01315; match to protein family HMM PF02738 YP_166761.1 identified by similarity to SP:P19920; match to protein family HMM PF00941 YP_166762.1 identified by similarity to SP:Q00790 YP_166763.1 identified by similarity to GB:BAC51459.1 YP_166764.1 identified by match to protein family HMM PF00753; match to protein family HMM TIGR01409 YP_166765.1 identified by similarity to GB:AAN68285.1 YP_166766.1 identified by match to protein family HMM PF00873 YP_166767.1 identified by similarity to SP:P75830; match to protein family HMM TIGR01730 YP_166768.1 identified by similarity to GB:CAF18626.1 YP_166769.1 identified by similarity to GB:AAQ00309.1 YP_166770.1 identified by similarity to GB:BAC14468.1 YP_166772.1 identified by similarity to GB:BAC73064.1 YP_166774.1 identified by match to protein family HMM PF00534 YP_166775.1 identified by match to protein family HMM PF02397 YP_166776.1 identified by match to protein family HMM PF01522 YP_166777.1 identified by match to protein family HMM PF00534 YP_166778.1 identified by match to protein family HMM TIGR01409 YP_166779.1 identified by match to protein family HMM PF02706 YP_166780.1 identified by match to protein family HMM PF04932 YP_166781.1 identified by match to protein family HMM PF00535 YP_166782.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166783.1 identified by match to protein family HMM PF01244 YP_166784.1 identified by match to protein family HMM PF00496 YP_166785.1 identified by similarity to SP:P37316; match to protein family HMM PF00528 YP_166786.1 identified by similarity to SP:P37315; match to protein family HMM PF00528 YP_166787.1 identified by similarity to SP:P24136; match to protein family HMM PF00005 YP_166788.1 identified by match to protein family HMM PF00005 YP_166789.1 identified by match to protein family HMM PF04069 YP_166790.1 identified by similarity to SP:P46920; match to protein family HMM PF00005 YP_166791.1 identified by similarity to SP:P46921; match to protein family HMM PF00528 YP_166792.1 identified by similarity to PIR:JC7986 YP_166794.1 identified by match to protein family HMM PF00392 YP_166795.1 identified by match to protein family HMM PF00909 YP_166796.1 identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512 YP_166797.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_166798.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_166799.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01803 YP_166800.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_166801.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882 YP_166802.1 identified by match to protein family HMM PF00892 YP_166803.1 identified by match to protein family HMM PF01571 YP_166804.1 identified by match to protein family HMM PF01152 YP_166805.1 identified by match to protein family HMM PF05161 YP_166806.1 identified by similarity to SP:O53078 YP_166807.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_166809.1 catalyzes the formation of malyl-CoA from malate and CoA YP_166810.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_166811.1 Involved in the metabolism of aromatic amino acids YP_166812.1 identified by match to protein family HMM PF00311 YP_166813.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_166814.1 identified by similarity to SP:P31592; match to protein family HMM PF00120; match to protein family HMM PF03951 YP_166815.1 identified by match to protein family HMM PF01645 YP_166816.1 identified by match to protein family HMM PF01493 YP_166817.1 identified by match to protein family HMM PF00310 YP_166819.1 identified by match to protein family HMM PF00909 YP_166820.1 identified by match to protein family HMM PF01571 YP_166821.1 identified by similarity to GB:BAB53453.1 YP_166822.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175 YP_166823.1 identified by similarity to GB:BAB53455.1 YP_166824.1 identified by match to protein family HMM PF01381 YP_166825.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_166826.1 identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375 YP_166827.1 identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372 YP_166828.1 identified by similarity to SP:Q46336; match to protein family HMM PF04267 YP_166829.1 identified by similarity to SP:P40875; match to protein family HMM TIGR01373 YP_166830.1 identified by match to protein family HMM PF02627 YP_166831.1 identified by match to protein family HMM PF00355 YP_166832.1 identified by match to protein family HMM PF01380 YP_166833.1 identified by match to protein family HMM PF01571 YP_166834.1 identified by match to protein family HMM PF00107 YP_166835.1 identified by similarity to SP:P27099; match to protein family HMM PF01188; match to protein family HMM PF02746 YP_166836.1 identified by similarity to SP:P95608; match to protein family HMM PF01188; match to protein family HMM PF02746 YP_166837.1 identified by similarity to GB:CAE27785.1 YP_166838.1 identified by similarity to SP:P48247; match to protein family HMM PF00202 YP_166839.1 identified by similarity to GB:CAE31122.1 YP_166840.1 identified by match to protein family HMM PF03972 YP_166841.1 identified by match to protein family HMM PF01557 YP_166842.1 identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745 YP_166843.1 identified by match to protein family HMM PF06253 YP_166844.1 identified by match to protein family HMM PF02615 YP_166845.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166846.1 identified by similarity to GB:BAB49910.1 YP_166847.1 identified by similarity to SP:P23861; match to protein family HMM PF01547 YP_166848.1 identified by similarity to SP:P31136; match to protein family HMM PF00528 YP_166849.1 identified by similarity to SP:P23860; match to protein family HMM PF00528 YP_166850.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR01187 YP_166851.1 identified by match to protein family HMM PF00196 YP_166852.1 identified by similarity to GB:CAE10095.1 YP_166853.1 identified by similarity to GB:AAK03561.1; match to protein family HMM TIGR01409 YP_166854.1 identified by similarity to SP:Q9CKX3 YP_166855.1 identified by similarity to GB:AAM72242.1 YP_166856.1 identified by match to protein family HMM PF00027 YP_166857.1 identified by match to protein family HMM PF04397 YP_166858.1 identified by match to protein family HMM PF00353 YP_166860.1 identified by similarity to GB:CAE07324.1 YP_166861.1 identified by match to protein family HMM PF00903 YP_166863.1 identified by match to protein family HMM PF00067 YP_166864.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_166865.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_166866.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_166867.1 identified by match to protein family HMM PF00353 YP_166869.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01571 YP_166870.1 identified by similarity to GB:AAN68935.1 YP_166872.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_166873.1 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_166875.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_166876.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_166877.1 identified by match to protein family HMM PF00571; match to protein family HMM PF02163 YP_166878.1 identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_166879.1 identified by match to protein family HMM PF01464 YP_166880.1 identified by similarity to GB:AAK18170.1 YP_166881.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_166882.1 identified by match to protein family HMM PF00144 YP_166884.1 identified by match to protein family HMM PF05694 YP_166885.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_166886.1 identified by similarity to SP:P37315; match to protein family HMM PF00528 YP_166887.1 identified by match to protein family HMM PF00528 YP_166888.1 identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_166889.1 identified by match to protein family HMM PF01571 YP_166890.1 identified by similarity to GB:AAF98391.2 YP_166893.1 identified by similarity to GB:CAF32821.1 YP_166895.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_166896.1 identified by match to protein family HMM PF00528 YP_166897.1 identified by similarity to SP:P42062; match to protein family HMM PF00528 YP_166898.1 identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_166899.1 identified by match to protein family HMM PF00165 YP_166900.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_166901.1 Catalyzes the phosphorylation of UMP to UDP YP_166903.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_166904.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_166905.1 identified by similarity to SP:P06466; match to protein family HMM PF01148 YP_166906.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_166907.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_166909.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_166911.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_166912.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_166913.1 identified by similarity to GB:CAE28351.1 YP_166914.1 identified by similarity to SP:P10441; match to protein family HMM PF02684; match to protein family HMM TIGR00215 YP_166915.1 identified by match to protein family HMM PF00583 YP_166916.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_166917.1 identified by similarity to PIR:AE3305 YP_166918.1 identified by similarity to SP:Q45994; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_166919.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_166920.1 catalyzes branch migration in Holliday junction intermediates YP_166922.1 identified by similarity to GB:AAK22449.1 YP_166923.1 identified by match to protein family HMM PF01502 YP_166924.1 identified by match to protein family HMM PF00749 YP_166925.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_166926.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_166927.1 identified by similarity to GB:AAN29721.1; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_166928.1 identified by similarity to PIR:AE2803 YP_166929.1 identified by match to protein family HMM PF00392 YP_166930.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_166931.1 forms a direct contact with the tRNA during translation YP_166932.1 identified by similarity to GB:AAR33500.1 YP_166933.1 identified by match to protein family HMM PF00294 YP_166934.1 identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378 YP_166935.1 identified by match to protein family HMM PF02538 YP_166936.1 identified by match to protein family HMM PF00155 YP_166937.1 identified by match to protein family HMM PF01177 YP_166938.1 identified by match to protein family HMM PF03972 YP_166939.1 identified by match to protein family HMM PF02826 YP_166940.1 identified by match to protein family HMM PF00701 YP_166941.1 identified by similarity to GB:BAC48815.1 YP_166942.1 identified by match to protein family HMM PF02515 YP_166943.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_166945.1 identified by match to protein family HMM PF00005 YP_166946.1 identified by match to protein family HMM PF00005 YP_166947.1 identified by match to protein family HMM PF02653 YP_166948.1 identified by match to protein family HMM PF02653 YP_166949.1 Assignment based partly on membership in branched-chain amino acid ABC transporter gene cluster YP_166950.1 identified by match to protein family HMM PF01774 YP_166951.1 identified by match to protein family HMM PF00547; match to protein family HMM TIGR00193 YP_166952.1 identified by similarity to GB:BAB21066.1; match to protein family HMM PF00699; match to protein family HMM TIGR00192 YP_166953.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_166954.1 identified by similarity to SP:P18317; match to protein family HMM PF02814; match to protein family HMM PF05194 YP_166955.1 identified by match to protein family HMM PF01730 YP_166956.1 identified by match to protein family HMM PF01495; match to protein family HMM TIGR00101 YP_166958.1 identified by similarity to SP:P39140; match to protein family HMM PF02796 YP_166959.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_166960.1 identified by match to protein family HMM PF04290 YP_166961.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_166962.1 identified by match to protein family HMM PF00392 YP_166963.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_166964.1 identified by similarity to SP:P39160; match to protein family HMM PF01232 YP_166965.1 identified by similarity to GB:CAD15199.1 YP_166966.1 identified by match to protein family HMM PF00440 YP_166967.1 identified by similarity to GB:AAN87337.1; match to protein family HMM PF03976 YP_166968.1 identified by similarity to GB:AAC36352.1; match to protein family HMM PF00561 YP_166969.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_166970.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_166971.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_166972.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_166974.1 identified by match to protein family HMM PF00440 YP_166975.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_166976.1 identified by similarity to GB:AAO60101.1; match to protein family HMM PF00037; match to protein family HMM PF03860 YP_166978.1 identified by similarity to PIR:F97376 YP_166979.1 identified by similarity to GB:CAE29115.1 YP_166980.1 identified by similarity to GB:BAB54226.1 YP_166981.1 identified by similarity to SP:P96110; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_166982.1 identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373 YP_166983.1 identified by similarity to SP:Q46336; match to protein family HMM PF04267 YP_166984.1 identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372 YP_166985.1 identified by match to protein family HMM PF04268 YP_166987.1 synthesizes RNA primers at the replication forks YP_166988.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_166990.1 identified by similarity to PIR:D97619; match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_166991.1 identified by similarity to GB:BAC44848.1; match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_166992.1 identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_166993.1 identified by similarity to SP:P42217; match to protein family HMM PF05159 YP_166994.1 identified by match to protein family HMM PF02563 YP_166995.1 identified by similarity to SP:P42218; match to protein family HMM PF05159 YP_166997.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_166999.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_167000.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_167001.1 identified by similarity to SP:P04381; match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_167002.1 identified by match to protein family HMM PF00196 YP_167003.1 identified by similarity to GB:CAE26745.1 YP_167004.1 identified by similarity to GB:CAA06860.1 YP_167005.1 identified by match to protein family HMM PF00583 YP_167008.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_167010.1 identified by match to protein family HMM PF03480 YP_167011.1 catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde in the final enzymatic step of quinolinate biosynthesis YP_167012.1 identified by similarity to GB:CAE42879.1 YP_167013.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_167014.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_167017.1 identified by match to protein family HMM PF00440 YP_167018.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_167020.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_167021.1 identified by similarity to GB:BAB48956.1 YP_167022.1 identified by match to protein family HMM PF00005 YP_167023.1 identified by match to protein family HMM PF00528 YP_167024.1 identified by match to protein family HMM PF00528 YP_167026.1 identified by similarity to GB:CAC40783.1; match to protein family HMM PF00528 YP_167027.1 identified by similarity to GB:CAC40784.1; match to protein family HMM PF00005 YP_167028.1 identified by similarity to GB:CAC40782.1; match to protein family HMM PF01547 YP_167029.1 identified by match to protein family HMM TIGR01764 YP_167030.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00400 YP_167031.1 identified by match to protein family HMM TIGR01583 YP_167032.1 identified by similarity to SP:P27273; match to protein family HMM PF00037 YP_167033.1 identified by similarity to PIR:S18213; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409 YP_167034.1 identified by match to protein family HMM TIGR01409 YP_167035.1 identified by match to protein family HMM PF06192 YP_167037.1 identified by match to protein family HMM PF00037 YP_167038.1 identified by similarity to SP:P24059 YP_167039.1 identified by similarity to PIR:H95364 YP_167041.1 identified by similarity to GB:BAC50748.1 YP_167043.1 identified by match to protein family HMM PF01613 YP_167044.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_167045.1 identified by similarity to GB:AAD22393.1 YP_167046.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445 YP_167047.1 identified by match to protein family HMM PF00474 YP_167048.1 identified by similarity to GB:CAE09733.1 YP_167049.1 identified by similarity to SP:P10772; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351 YP_167050.1 identified by similarity to SP:P27550; match to protein family HMM PF00501 YP_167051.1 identified by match to protein family HMM PF03480 YP_167052.1 identified by match to protein family HMM PF04290 YP_167053.1 identified by match to protein family HMM PF06808 YP_167054.1 identified by match to protein family HMM PF01925 YP_167055.1 identified by match to protein family HMM PF01925 YP_167056.1 identified by similarity to GB:AAN52089.1; match to protein family HMM PF00149 YP_167057.1 identified by similarity to SP:P10904; match to protein family HMM PF01547 YP_167058.1 identified by match to protein family HMM PF00528 YP_167059.1 identified by match to protein family HMM PF00528 YP_167060.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_167061.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167063.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_167064.1 identified by match to protein family HMM PF05013 YP_167065.1 identified by match to protein family HMM PF00857 YP_167066.1 identified by similarity to SP:P21629; match to protein family HMM PF00005 YP_167067.1 identified by similarity to SP:P21175; match to protein family HMM PF01094 YP_167068.1 identified by similarity to SP:P22731; match to protein family HMM PF00005 YP_167069.1 identified by similarity to SP:P08340; match to protein family HMM PF02653 YP_167070.1 identified by match to protein family HMM PF02653 YP_167071.1 identified by match to protein family HMM PF03069 YP_167072.1 identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005 YP_167073.1 identified by match to protein family HMM PF01408 YP_167074.1 identified by match to protein family HMM PF00528 YP_167075.1 identified by similarity to SP:P29823; match to protein family HMM PF00528 YP_167076.1 identified by similarity to SP:Q00749; match to protein family HMM PF01547 YP_167077.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_167078.1 identified by match to protein family HMM PF01869 YP_167079.1 identified by match to protein family HMM PF00392 YP_167080.1 identified by match to protein family HMM PF01380 YP_167081.1 identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_167082.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_167083.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF01094 YP_167084.1 identified by match to protein family HMM PF00501 YP_167085.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00005 YP_167086.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00005 YP_167087.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF02653 YP_167088.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF02653 YP_167089.1 identified by match to protein family HMM PF00107 YP_167090.1 identified by match to protein family HMM PF00440 YP_167091.1 identified by similarity to GB:CAD18588.1 YP_167093.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_167095.1 identified by match to protein family HMM PF01728 YP_167096.1 identified by match to protein family HMM PF02541 YP_167097.1 identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409 YP_167098.1 identified by similarity to GB:BAB48658.1 YP_167099.1 identified by similarity to PIR:B97532 YP_167100.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein YP_167102.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_167104.1 identified by similarity to GB:AAK25209.1 YP_167105.1 identified by match to protein family HMM TIGR00365 YP_167106.1 identified by match to protein family HMM PF01722 YP_167107.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_167108.1 identified by match to protein family HMM PF00924 YP_167109.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167110.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_167111.1 identified by match to protein family HMM PF01553 YP_167112.1 identified by similarity to SP:P48797; match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_167113.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_167114.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_167115.1 identified by similarity to GB:AAF26222.1; match to protein family HMM PF05838 YP_167117.1 identified by similarity to SP:Q00500; match to protein family HMM PF01578; match to protein family HMM TIGR00353 YP_167118.1 identified by match to protein family HMM PF03918 YP_167119.1 identified by match to protein family HMM PF00378 YP_167120.1 identified by similarity to SP:O43464 YP_167121.1 catalyzes the formation of methionine from L-homocysteine and S-adenosyl-L-methionine YP_167123.1 identified by similarity to GB:CAC46350.1; match to protein family HMM PF07345 YP_167124.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_167125.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302 YP_167126.1 identified by match to protein family HMM PF00107 YP_167127.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_167128.1 identified by similarity to SP:P13633; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_167129.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_167130.1 identified by match to protein family HMM TIGR00757 YP_167131.1 identified by similarity to SP:P37618; match to protein family HMM PF01206 YP_167132.1 identified by similarity to GB:AAF26218.1; match to protein family HMM PF02683 YP_167133.1 identified by similarity to PIR:AF3633 YP_167134.1 identified by match to protein family HMM PF00067 YP_167135.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis YP_167136.1 identified by similarity to SP:P05100; match to protein family HMM PF03352 YP_167137.1 identified by similarity to GB:AAQ61811.1 YP_167138.1 identified by match to protein family HMM PF00440 YP_167139.1 identified by similarity to GB:CAC46714.1 YP_167140.1 identified by similarity to GB:AAK23509.1 YP_167141.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_167143.1 identified by similarity to GB:AAK24073.1 YP_167144.1 identified by similarity to SP:P17551; match to protein family HMM PF02417 YP_167145.1 identified by similarity to PIR:AB2272 YP_167147.1 identified by match to protein family HMM PF00392 YP_167148.1 DmdA; DMSP demethylase; in Silicibacter knockout of this gene results in an inability to convert DMSP to methanethiol which is restored with a cloned copy of the gene YP_167149.1 identified by match to protein family HMM PF00107 YP_167150.1 identified by match to protein family HMM PF00903 YP_167151.1 identified by match to protein family HMM PF00266 YP_167152.1 identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441 YP_167153.1 identified by match to protein family HMM PF02353 YP_167154.1 identified by similarity to GB:AAB95446.1 YP_167155.1 identified by similarity to GB:AAB95442.1; match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_167156.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_167157.1 identified by match to protein family HMM PF00924 YP_167158.1 identified by similarity to GB:CAC46199.1 YP_167160.1 identified by similarity to GB:AAK22811.1 YP_167161.1 identified by similarity to SP:P12552; match to protein family HMM PF05930 YP_167162.1 identified by match to protein family HMM PF00589 YP_167163.1 identified by match to protein family HMM PF05951; match to protein family HMM TIGR01409 YP_167164.1 identified by match to protein family HMM PF01471 YP_167165.1 identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 YP_167166.1 identified by similarity to SP:P20804; match to protein family HMM PF00550 YP_167167.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_167168.1 identified by match to protein family HMM PF06776 YP_167169.1 identified by similarity to PIR:B97464; match to protein family HMM PF05872 YP_167170.1 identified by similarity to SP:P22729; match to protein family HMM PF02653 YP_167171.1 identified by similarity to SP:P08340; match to protein family HMM PF02653 YP_167172.1 identified by similarity to SP:P22731; match to protein family HMM PF00005 YP_167173.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00005 YP_167174.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF01094 YP_167175.1 identified by similarity to GB:CAC46907.1 YP_167176.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_167177.1 identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358 YP_167178.1 identified by similarity to PIR:C97571 YP_167179.1 identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_167180.1 Essential for recycling GMP and indirectly, cGMP YP_167181.1 identified by match to protein family HMM PF00132 YP_167182.1 identified by similarity to SP:P23621; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_167184.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_167185.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_167186.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_167187.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_167188.1 identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_167189.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167190.1 identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_167191.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_167192.1 identified by similarity to GB:AAR05249.1; match to protein family HMM PF00106 YP_167193.1 identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189 YP_167194.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_167195.1 identified by match to protein family HMM PF00144 YP_167196.1 identified by match to protein family HMM PF01614 YP_167197.1 identified by match to protein family HMM PF01636 YP_167198.1 identified by match to protein family HMM PF00300 YP_167199.1 identified by similarity to GB:AAL02322.2 YP_167200.1 identified by match to protein family HMM PF00106 YP_167201.1 identified by match to protein family HMM PF00106 YP_167202.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_167203.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_167204.1 identified by match to protein family HMM PF00107 YP_167205.1 identified by match to protein family HMM PF00300 YP_167206.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_167207.1 identified by similarity to SP:P25200; match to protein family HMM PF01575 YP_167208.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_167209.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_167210.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_167211.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_167214.1 identified by match to protein family HMM PF01553 YP_167215.1 identified by similarity to PIR:AB3477 YP_167218.1 identified by similarity to PIR:AB3305 YP_167219.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_167220.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_167221.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_167222.1 identified by match to protein family HMM PF00583 YP_167223.1 identified by match to protein family HMM PF01810 YP_167224.1 involved in the peptidyltransferase reaction during translation YP_167225.1 fusion of ribosomal protein L21 and COG3743 YP_167228.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_167229.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_167230.1 identified by similarity to GB:CAE79871.1 YP_167234.1 identified by match to protein family HMM PF01042 YP_167235.1 identified by match to protein family HMM PF01266 YP_167236.1 identified by similarity to SP:Q48935; match to protein family HMM PF00850 YP_167237.1 identified by match to protein family HMM PF00583 YP_167238.1 identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853 YP_167239.1 identified by match to protein family HMM PF00202 YP_167240.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_167241.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409 YP_167242.1 identified by similarity to SP:P23859; match to protein family HMM PF00528 YP_167243.1 Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528 YP_167244.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167246.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_167249.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_167250.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_167251.1 identified by similarity to GB:AAA16052.1 YP_167252.1 identified by match to protein family HMM TIGR01444 YP_167253.1 identified by similarity to SP:Q8D461; match to protein family HMM PF01906 YP_167255.1 with SufCD activates cysteine desulfurase SufS YP_167256.1 identified by similarity to GB:AAN17744.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_167257.1 identified by similarity to GB:BAB47692.1 YP_167259.1 identified by match to protein family HMM PF01966 YP_167260.1 identified by match to protein family HMM PF00310 YP_167261.1 identified by similarity to SP:P23895; match to protein family HMM PF00893 YP_167262.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_167263.1 identified by similarity to GB:CAC41768.1; match to protein family HMM PF07045 YP_167264.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_167265.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_167267.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_167268.1 identified by match to protein family HMM PF01189 YP_167269.1 identified by match to protein family HMM PF00753 YP_167270.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302 YP_167271.1 identified by match to protein family HMM PF02515 YP_167272.1 identified by match to protein family HMM PF00111 YP_167273.1 identified by match to protein family HMM PF01209 YP_167275.1 identified by similarity to SP:Q00594 YP_167276.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_167277.1 identified by match to protein family HMM TIGR01198 YP_167278.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_167279.1 identified by match to protein family HMM PF04055 YP_167280.1 identified by similarity to SP:P12288; match to protein family HMM PF06233 YP_167281.1 negatively supercoils closed circular double-stranded DNA YP_167283.1 identified by match to protein family HMM PF02074 YP_167284.1 identified by match to protein family HMM PF02628 YP_167285.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_167286.1 identified by similarity to SP:P39594 YP_167288.1 identified by similarity to GB:BAC89701.1 YP_167289.1 identified by match to protein family HMM PF02798 YP_167290.1 identified by match to protein family HMM PF00294 YP_167291.1 identified by match to protein family HMM PF04227 YP_167292.1 identified by similarity to GB:AAQ61403.1; match to protein family HMM PF04367 YP_167293.1 identified by match to protein family HMM PF00583 YP_167294.1 identified by match to protein family HMM PF01734 YP_167295.1 identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963 YP_167296.1 identified by match to protein family HMM PF00496 YP_167297.1 identified by similarity to GB:BAC46738.1 YP_167298.1 identified by match to protein family HMM PF01381 YP_167299.1 identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501 YP_167300.1 identified by match to protein family HMM PF01323 YP_167301.1 identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM TIGR00710 YP_167302.1 identified by match to protein family HMM PF00515 YP_167304.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 YP_167305.1 identified by similarity to GB:AAL26882.1 YP_167306.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_167308.1 identified by similarity to SP:P07941; match to protein family HMM PF01804 YP_167310.1 identified by similarity to SP:P25519; match to protein family HMM TIGR00231 YP_167311.1 Stimulates the elongation of poly(A) tails YP_167312.1 identified by similarity to SP:P21166; match to protein family HMM PF02386 YP_167313.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_167315.1 identified by similarity to SP:Q04849; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_167316.1 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_167317.1 identified by similarity to SP:P45671; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_167318.1 identified by similarity to SP:P09431; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_167319.1 identified by similarity to SP:Q08111; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_167320.1 identified by similarity to GB:AAN30040.1; match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453 YP_167321.1 identified by similarity to SP:P18200; match to protein family HMM PF04608 YP_167322.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_167323.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_167324.1 identified by similarity to GB:AAK38651.1 YP_167325.1 identified by match to protein family HMM PF03972 YP_167326.1 identified by match to protein family HMM PF03654 YP_167327.1 identified by similarity to SP:P37171; match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_167328.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167329.1 identified by similarity to SP:Q53142; match to protein family HMM PF01322 YP_167330.1 identified by similarity to SP:Q53143; match to protein family HMM PF00034 YP_167331.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_167332.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_167333.1 identified by similarity to PIR:S39907; match to protein family HMM PF00578 YP_167334.1 identified by similarity to GB:AAK22261.1 YP_167335.1 identified by similarity to SP:P52677; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167336.1 identified by similarity to GB:CAE27296.1 YP_167338.1 identified by match to protein family HMM PF06253 YP_167339.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_167340.1 identified by match to protein family HMM PF00892 YP_167341.1 identified by match to protein family HMM PF03349 YP_167342.1 identified by match to protein family HMM PF00892 YP_167344.1 identified by match to protein family HMM PF00597 YP_167345.1 identified by match to protein family HMM PF02600 YP_167346.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_167347.1 identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229 YP_167348.1 identified by match to protein family HMM PF02274 YP_167349.1 catalyzes the formation of L-proline from L-ornithine YP_167350.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_167351.1 identified by match to protein family HMM PF01844 YP_167352.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_167353.1 identified by match to protein family HMM PF00583 YP_167354.1 identified by match to protein family HMM PF02230 YP_167355.1 identified by match to protein family HMM PF00730 YP_167356.1 identified by similarity to GB:CAE30241.1 YP_167357.1 identified by similarity to PIR:F87495 YP_167358.1 catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA YP_167359.1 identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435 YP_167360.1 identified by similarity to SP:Q56232; match to protein family HMM PF00155 YP_167361.1 identified by similarity to GB:AAL60203.1 YP_167362.1 identified by match to protein family HMM PF06253 YP_167363.1 identified by similarity to GB:BAC50222.1 YP_167364.1 Catalyzes the rate-limiting step in dNTP synthesis YP_167366.1 identified by similarity to GB:CAE27967.1; match to protein family HMM PF02643 YP_167367.1 identified by similarity to SP:P32081; similarity to SP:P36997; match to protein family HMM PF00313 YP_167368.1 identified by match to protein family HMM PF01243 YP_167369.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_167370.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_167371.1 identified by match to protein family HMM PF00155 YP_167372.1 identified by similarity to PIR:T46851 YP_167373.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_167374.1 identified by similarity to GB:CAC47284.1; match to protein family HMM PF05962 YP_167376.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_167377.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_167378.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_167379.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_167380.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_167381.1 Represses a number of genes involved in the response to DNA damage YP_167383.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_167384.1 identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798 YP_167386.1 identified by similarity to PIR:B97447; match to protein family HMM PF04055 YP_167387.1 identified by similarity to SP:O93657; match to protein family HMM PF02310; match to protein family HMM PF02607 YP_167388.1 identified by similarity to PIR:T03518 YP_167389.1 identified by similarity to GB:BAB48654.1 YP_167390.1 identified by similarity to PIR:AC3193 YP_167391.1 identified by similarity to PIR:AB3193 YP_167392.1 identified by match to protein family HMM PF02657 YP_167394.1 identified by match to protein family HMM PF01612; match to protein family HMM TIGR01388 YP_167395.1 identified by similarity to SP:P08179; match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_167396.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_167397.1 identified by similarity to GB:AAR21562.1; match to protein family HMM PF00753; match to protein family HMM TIGR01409 YP_167398.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167399.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_167400.1 identified by match to protein family HMM PF00753 YP_167401.1 identified by similarity to SP:P77535; match to protein family HMM PF01594 YP_167402.1 identified by similarity to SP:P39067; match to protein family HMM PF00850 YP_167403.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_167404.1 identified by similarity to GB:BAB52889.1 YP_167406.1 identified by match to protein family HMM PF00005 YP_167407.1 identified by match to protein family HMM PF02687 YP_167408.1 identified by similarity to GB:AAK90829.1 YP_167409.1 identified by similarity to SP:P55495 YP_167410.1 identified by match to protein family HMM PF00582 YP_167411.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123 YP_167412.1 identified by similarity to SP:P12920; match to protein family HMM TIGR02122 YP_167413.1 identified by match to protein family HMM PF00583 YP_167414.1 identified by match to protein family HMM PF01037 YP_167415.1 identified by match to protein family HMM PF00392 YP_167416.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_167417.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_167418.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_167419.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_167420.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_167421.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_167422.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_167423.1 identified by similarity to PIR:H75411; match to protein family HMM PF05661 YP_167424.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_167426.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_167427.1 identified by match to protein family HMM PF00571 YP_167428.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167429.1 identified by similarity to SP:P28810; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_167430.1 identified by similarity to GB:AAM72242.1 YP_167431.1 identified by match to protein family HMM PF03734 YP_167434.1 identified by similarity to GB:BAB53466.1 YP_167435.1 ATP-dependent carboxylate-amine ligase YP_167436.1 identified by match to protein family HMM PF02012 YP_167437.1 identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_167438.1 identified by match to protein family HMM PF00378 YP_167439.1 identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692 YP_167440.1 identified by similarity to SP:O69787; match to protein family HMM PF00884 YP_167441.1 identified by match to protein family HMM PF00903 YP_167442.1 identified by match to protein family HMM PF01381 YP_167444.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_167445.1 identified by match to protein family HMM PF00581 YP_167446.1 identified by similarity to GB:BAB53751.1 YP_167447.1 identified by match to protein family HMM PF00092 YP_167448.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_167450.1 identified by similarity to GB:BAC46583.1; match to protein family HMM PF06041 YP_167452.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_167453.1 identified by similarity to GB:BAC49590.1 YP_167454.1 identified by match to protein family HMM PF00578 YP_167455.1 identified by similarity to PIR:G97580; match to protein family HMM PF04305 YP_167456.1 identified by match to protein family HMM PF01551 YP_167457.1 identified by match to protein family HMM PF04519 YP_167459.1 identified by match to protein family HMM PF00160 YP_167460.1 identified by match to protein family HMM PF00160 YP_167461.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_167464.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167465.1 identified by similarity to GB:AAN30050.1 YP_167466.1 identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676 YP_167467.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_167468.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349 YP_167471.1 identified by similarity to GB:BAB53127.1 YP_167472.1 identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_167473.1 identified by similarity to SP:P05796; match to protein family HMM PF00132; match to protein family HMM PF06426; match to protein family HMM TIGR01172 YP_167474.1 identified by similarity to SP:P18274 YP_167476.1 identified by similarity to PIR:G97477 YP_167477.1 identified by similarity to PIR:F97477 YP_167478.1 identified by similarity to GB:CAE27346.1 YP_167479.1 identified by similarity to PIR:D97477 YP_167480.1 identified by similarity to GB:CAE27342.1 YP_167482.1 identified by match to protein family HMM TIGR02126 YP_167483.1 identified by similarity to GB:AAN29524.1 YP_167484.1 identified by match to protein family HMM TIGR01563 YP_167485.1 identified by similarity to GB:AAN29521.1; match to protein family HMM TIGR02215 YP_167486.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_167487.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543 YP_167489.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_167490.1 identified by similarity to GB:AAF13179.1 YP_167492.1 identified by similarity to GB:AAK25445.1 YP_167493.1 identified by similarity to GB:BAB49728.1 YP_167494.1 identified by similarity to GB:AAK23657.1; match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_167495.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_167496.1 identified by similarity to SP:P26720; match to protein family HMM PF00977 YP_167497.1 identified by match to protein family HMM PF00583 YP_167498.1 carries the fatty acid chain in fatty acid biosynthesis YP_167499.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830 YP_167500.1 identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_167501.1 identified by match to protein family HMM PF01292; match to protein family HMM PF04264 YP_167503.1 identified by similarity to GB:AAQ60940.1; match to protein family HMM PF04264 YP_167505.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_167506.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_167507.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_167508.1 identified by match to protein family HMM PF01464 YP_167509.1 identified by match to protein family HMM PF01381 YP_167510.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_167511.1 identified by match to protein family HMM PF00765 YP_167512.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_167513.1 identified by similarity to PIR:E82389 YP_167515.1 identified by similarity to GB:AAR38409.1 YP_167516.1 identified by similarity to GB:AAQ18205.1; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_167517.1 identified by match to protein family HMM PF00543 YP_167518.1 identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_167521.1 identified by similarity to GB:BAC90287.1 YP_167522.1 identified by match to protein family HMM PF00557 YP_167524.1 identified by match to protein family HMM PF02566 YP_167525.1 identified by match to protein family HMM PF02632 YP_167526.1 identified by similarity to PIR:T36819 YP_167528.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_167530.1 identified by similarity to GB:BAB49208.1 YP_167531.1 identified by similarity to SP:P23448; match to protein family HMM PF01706 YP_167532.1 identified by match to protein family HMM PF00892 YP_167533.1 identified by similarity to SP:P24187; match to protein family HMM PF03279 YP_167534.1 identified by similarity to GB:CAC47807.1; match to protein family HMM PF06764 YP_167535.1 Catalyzes the conversion of citrate to isocitrate YP_167537.1 identified by match to protein family HMM TIGR00385 YP_167538.1 identified by similarity to SP:P33929; match to protein family HMM PF01578; match to protein family HMM TIGR01191 YP_167539.1 identified by similarity to SP:P33930; match to protein family HMM PF03379; match to protein family HMM TIGR01190 YP_167540.1 ATP-binding protein; required for proper cytochrome c maturation YP_167541.1 identified by similarity to GB:AAB61905.1; match to protein family HMM PF04635 YP_167542.1 identified by similarity to GB:BAC45969.1; match to protein family HMM PF01925 YP_167543.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_167544.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_167545.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_167546.1 identified by match to protein family HMM PF00924 YP_167547.1 identified by similarity to GB:BAB50081.1 YP_167548.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_167550.1 identified by match to protein family HMM PF00487 YP_167551.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_167552.1 identified by match to protein family HMM PF01011 YP_167554.1 identified by match to protein family HMM TIGR01730 YP_167557.1 identified by match to protein family HMM PF02517 YP_167558.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_167559.1 identified by match to protein family HMM PF01476 YP_167560.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_167561.1 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_167562.1 identified by match to protein family HMM PF00378 YP_167563.1 identified by similarity to SP:P09157 YP_167564.1 identified by match to protein family HMM TIGR01444 YP_167567.1 identified by similarity to SP:Q46338; match to protein family HMM PF04268 YP_167568.1 identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372 YP_167569.1 identified by similarity to SP:Q46336; match to protein family HMM PF04267 YP_167570.1 identified by similarity to GB:BAB54267.1 YP_167571.1 identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373 YP_167572.1 identified by similarity to SP:P45400 YP_167573.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_167574.1 identified by similarity to GB:BAB48126.1; match to protein family HMM PF06945 YP_167575.1 identified by similarity to SP:P55127; match to protein family HMM PF00353 YP_167577.1 identified by match to protein family HMM PF01925 YP_167578.1 identified by match to protein family HMM PF01614 YP_167579.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_167580.1 identified by match to protein family HMM PF04290 YP_167581.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409 YP_167582.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_167583.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_167584.1 identified by similarity to SP:Q52663 YP_167585.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_167586.1 identified by similarity to SP:Q52663 YP_167587.1 identified by similarity to SP:Q52664; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_167588.1 identified by similarity to SP:Q52665; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_167589.1 identified by similarity to SP:Q52666; match to protein family HMM PF00005 YP_167590.1 identified by match to protein family HMM PF02690 YP_167591.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_167592.1 identified by similarity to SP:P30144; match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_167593.1 identified by match to protein family HMM PF00582 YP_167594.1 identified by match to protein family HMM PF01037 YP_167595.1 identified by similarity to PIR:B98206; match to protein family HMM PF00903 YP_167596.1 identified by similarity to SP:Q8X5V6; match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_167597.1 identified by match to protein family HMM PF02629 YP_167598.1 identified by match to protein family HMM PF00111 YP_167599.1 identified by match to protein family HMM PF05694 YP_167600.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_167601.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167602.1 identified by similarity to GB:CAE42344.1; match to protein family HMM PF03401 YP_167604.1 identified by match to protein family HMM PF01970 YP_167605.1 identified by similarity to SP:P51853; match to protein family HMM PF00205; match to protein family HMM PF02776 YP_167606.1 identified by similarity to GB:AAM35187.1 YP_167607.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_167608.1 identified by similarity to SP:P27847; match to protein family HMM PF01810 YP_167609.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509 YP_167610.1 identified by match to protein family HMM PF00589 YP_167612.1 identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240 YP_167613.1 identified by similarity to GB:CAB76248.1; match to protein family HMM PF02625 YP_167614.1 identified by similarity to GB:CAB76247.1; match to protein family HMM PF05762 YP_167615.1 identified by similarity to GB:CAA57830.1 YP_167616.1 identified by similarity to SP:P19919; match to protein family HMM PF01315; match to protein family HMM PF02738 YP_167617.1 identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_167618.1 identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450 YP_167619.1 identified by similarity to GB:CAB76246.1; match to protein family HMM PF03707 YP_167620.1 identified by match to protein family HMM PF00353 YP_167622.1 identified by match to protein family HMM PF00589 YP_167623.1 identified by similarity to PIR:F95919 YP_167624.1 identified by similarity to GB:CAC47676.1 YP_167626.1 identified by match to protein family HMM PF00106 YP_167627.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_167629.1 identified by similarity to GB:BAB21456.3 YP_167630.1 identified by match to protein family HMM PF00106 YP_167631.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_167632.1 identified by match to protein family HMM PF05721 YP_167633.1 identified by similarity to SP:P23523 YP_167634.1 catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate YP_167635.1 identified by match to protein family HMM PF01810 YP_167636.1 identified by similarity to GB:CAB55723.1 YP_167637.1 identified by similarity to SP:P37647; match to protein family HMM PF00294 YP_167638.1 identified by similarity to PIR:B96013 YP_167639.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_167640.1 identified by similarity to SP:O58489 YP_167641.1 identified by similarity to SP:P39346; match to protein family HMM PF00107 YP_167642.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_167643.1 identified by match to protein family HMM PF00892 YP_167644.1 identified by match to protein family HMM PF00106 YP_167645.1 identified by match to protein family HMM PF03446 YP_167646.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_167647.1 identified by match to protein family HMM PF04292; match to protein family HMM PF04295 YP_167648.1 identified by match to protein family HMM PF06808 YP_167649.1 identified by match to protein family HMM PF04290 YP_167650.1 identified by match to protein family HMM PF03480 YP_167651.1 identified by match to protein family HMM PF00392 YP_167652.1 identified by match to protein family HMM PF01557 YP_167653.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01571 YP_167654.1 identified by match to protein family HMM PF01177 YP_167655.1 identified by match to protein family HMM PF05721 YP_167656.1 identified by match to protein family HMM PF00392 YP_167657.1 identified by match to protein family HMM PF00557 YP_167658.1 identified by similarity to GB:AAF78097.1; match to protein family HMM PF04069 YP_167659.1 identified by similarity to SP:P14176; match to protein family HMM PF00528 YP_167660.1 identified by similarity to SP:P46920; match to protein family HMM PF00005 YP_167661.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_167662.1 identified by match to protein family HMM TIGR00710 YP_167663.1 identified by match to protein family HMM PF00005 YP_167664.1 identified by match to protein family HMM PF00583 YP_167665.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_167667.1 identified by match to protein family HMM PF01177 YP_167668.1 identified by match to protein family HMM PF01553 YP_167669.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_167670.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_167671.1 identified by match to protein family HMM PF03739 YP_167672.1 identified by similarity to SP:P31554 YP_167674.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_167675.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_167676.1 identified by similarity to PIR:H98216 YP_167677.1 identified by match to protein family HMM TIGR00536 YP_167678.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_167679.1 identified by similarity to GB:CAC45916.1 YP_167680.1 identified by similarity to GB:CAE21209.1 YP_167681.1 identified by similarity to SP:Q9BSE5; match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_167682.1 identified by similarity to GB:AAO54462.1 YP_167683.1 identified by similarity to GB:AAN68182.1; match to protein family HMM PF00903 YP_167684.1 catalyzes the formation of putrescine from agmatine YP_167685.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_167686.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era YP_167687.1 identified by match to protein family HMM PF01156 YP_167688.1 identified by match to protein family HMM PF00583 YP_167689.1 identified by similarity to GB:BAC45440.1 YP_167690.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_167691.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_167692.1 identified by match to protein family HMM PF00892 YP_167694.1 identified by match to protein family HMM PF01475 YP_167695.1 identified by similarity to PIR:E87313; match to protein family HMM PF06172 YP_167696.1 identified by similarity to SP:Q89MQ0; match to protein family HMM PF02696 YP_167697.1 identified by match to protein family HMM PF00892 YP_167698.1 identified by match to protein family HMM PF03372 YP_167699.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_167700.1 identified by similarity to SP:P00951; match to protein family HMM PF00579; match to protein family HMM TIGR00234 YP_167702.1 identified by similarity to GB:AAL49478.1 YP_167703.1 identified by similarity to SP:O02691; match to protein family HMM PF00106 YP_167704.1 identified by similarity to SP:P43672; match to protein family HMM PF00005 YP_167705.1 identified by similarity to GB:BAC75021.1 YP_167706.1 identified by match to protein family HMM PF04355 YP_167707.1 identified by similarity to GB:BAB54306.1 YP_167708.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_167709.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_167710.1 identified by similarity to SP:P24249; match to protein family HMM TIGR00747 YP_167711.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_167712.1 identified by match to protein family HMM PF00376 YP_167713.1 Catalyzes the deamination of dCTP to form dUTP YP_167715.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_167716.1 identified by match to protein family HMM PF02616 YP_167717.1 identified by similarity to SP:P75949; match to protein family HMM PF00933 YP_167719.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_167720.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353 YP_167721.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_167722.1 identified by match to protein family HMM PF00892 YP_167723.1 identified by similarity to GB:AAQ93629.1 YP_167724.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_167725.1 identified by similarity to SP:P23262; match to protein family HMM PF01360 YP_167726.1 identified by similarity to SP:P18274; match to protein family HMM PF01258 YP_167727.1 identified by similarity to GB:CAA57830.1; match to protein family HMM PF00004 YP_167728.1 identified by similarity to GB:CAE27057.1 YP_167730.1 identified by similarity to GB:BAB50733.1 YP_167732.1 identified by match to protein family HMM PF01435 YP_167733.1 identified by match to protein family HMM PF00296 YP_167734.1 identified by similarity to GB:CAE41104.1 YP_167735.1 identified by similarity to PIR:D83601 YP_167738.1 identified by match to protein family HMM PF03710 YP_167739.1 identified by match to protein family HMM PF04073 YP_167742.1 identified by similarity to SP:P13397; match to protein family HMM PF01425 YP_167743.1 activates fatty acids by binding to coenzyme A YP_167744.1 identified by similarity to GB:BAB49910.1 YP_167745.1 identified by similarity to SP:P22729; match to protein family HMM PF02653 YP_167746.1 identified by match to protein family HMM PF02653 YP_167747.1 identified by similarity to SP:P22731; match to protein family HMM PF00005 YP_167748.1 identified by similarity to SP:P21629; match to protein family HMM PF00005 YP_167749.1 Assignment partly based on membership in an branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF01094; match to protein family HMM TIGR01409 YP_167750.1 identified by match to protein family HMM PF00850 YP_167751.1 identified by match to protein family HMM PF00196 YP_167753.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_167754.1 identified by match to protein family HMM PF00501 YP_167755.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_167756.1 identified by similarity to GB:AAD28194.1; match to protein family HMM PF01039 YP_167757.1 identified by match to protein family HMM PF00364 YP_167758.1 identified by match to protein family HMM PF00392 YP_167759.1 identified by match to protein family HMM PF04909 YP_167760.1 identified by similarity to SP:P37735; match to protein family HMM PF03480 YP_167761.1 identified by match to protein family HMM PF04290 YP_167762.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_167763.1 identified by match to protein family HMM PF00107 YP_167764.1 identified by match to protein family HMM PF01636 YP_167765.1 identified by match to protein family HMM PF00392 YP_167766.1 identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_167767.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727 YP_167768.1 identified by similarity to SP:P37316; match to protein family HMM PF00528 YP_167769.1 identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_167770.1 identified by similarity to GB:CAE35155.1 YP_167771.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_167772.1 identified by similarity to SP:Q01578; match to protein family HMM PF03758 YP_167773.1 identified by similarity to SP:P23523; match to protein family HMM PF03446 YP_167774.1 identified by match to protein family HMM PF07005 YP_167775.1 identified by similarity to SP:P11550; match to protein family HMM PF00596 YP_167776.1 identified by similarity to SP:P30147 YP_167778.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_167779.1 identified by match to protein family HMM PF00903 YP_167780.1 identified by similarity to GB:CAE26557.1 YP_167781.1 identified by match to protein family HMM PF06271 YP_167782.2 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_167783.1 identified by match to protein family HMM PF00903 YP_167784.1 identified by match to protein family HMM PF06808 YP_167786.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409 YP_167787.1 identified by similarity to SP:P13799; match to protein family HMM PF02518 YP_167788.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_167789.1 identified by match to protein family HMM PF00440 YP_167791.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive YP_167792.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_167794.1 identified by match to protein family HMM PF01381 YP_167796.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_167797.1 identified by match to protein family HMM PF00903 YP_167798.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_167799.1 identified by match to protein family HMM PF00353 YP_167800.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_167801.1 identified by match to protein family HMM PF01520 YP_167802.1 identified by match to protein family HMM PF00155 YP_167803.1 identified by match to protein family HMM PF01435 YP_167804.1 identified by similarity to PIR:A49232; match to protein family HMM PF01323 YP_167805.1 identified by similarity to SP:P14489 YP_167807.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_167809.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_167810.1 identified by match to protein family HMM PF01546 YP_167812.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_167813.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_167814.1 identified by match to protein family HMM PF05013 YP_167815.1 identified by similarity to GB:BAB51666.1 YP_167816.1 identified by match to protein family HMM PF06808 YP_167817.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409 YP_167818.1 identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120 YP_167819.1 identified by similarity to GB:CAC81341.1; match to protein family HMM PF00171 YP_167820.1 identified by match to protein family HMM PF00465 YP_167821.1 identified by similarity to GB:CAD17488.1 YP_167823.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_167825.1 identified by match to protein family HMM PF00724 YP_167826.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_167827.1 identified by match to protein family HMM PF01145 YP_167828.1 identified by similarity to PIR:C75311 YP_167829.1 identified by similarity to GB:AAK23834.1; match to protein family HMM PF01883 YP_167830.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_167831.1 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_167832.1 identified by match to protein family HMM PF00583 YP_167833.1 identified by match to protein family HMM PF01810 YP_167834.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_167835.1 identified by similarity to GB:AAM40972.1 YP_167836.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_167837.1 identified by match to protein family HMM PF04290 YP_167838.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_167839.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_167840.1 identified by similarity to SP:P13633; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_167841.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_167842.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_167843.1 identified by similarity to GB:CAE29655.1 YP_167844.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_167845.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_167846.1 identified by similarity to PIR:AF3472 YP_167847.1 identified by similarity to SP:Q44532; match to protein family HMM PF00970 YP_167848.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_167849.1 identified by match to protein family HMM PF00994 YP_167850.1 identified by match to protein family HMM PF02625 YP_167852.1 identified by similarity to GB:BAC48787.1; match to protein family HMM PF04143 YP_167854.1 identified by match to protein family HMM PF05762 YP_167855.1 identified by similarity to SP:P39790 YP_167856.1 identified by similarity to GB:CAE29242.1 YP_167857.1 identified by similarity to PIR:F95909 YP_167859.1 identified by similarity to GB:CAB52234.1 YP_167860.1 identified by match to protein family HMM TIGR01444 YP_167861.1 identified by match to protein family HMM PF00535 YP_167863.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_167864.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_167865.1 unwinds double stranded DNA YP_167866.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167867.2 catalyzes the formation of pyruvate from D-cysteine YP_167868.1 Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster.; identified by similarity to SP:P37902; match to protein family HMM PF00497 YP_167869.1 Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster.; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_167870.1 identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_167871.1 identified by similarity to SP:P41076; match to protein family HMM PF00005 YP_167872.1 Contains tandem repeat of aspartate racemase domain. Aspartate racemase is normally a homodimer.; identified by similarity to PIR:T08467; match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_167873.1 catalyzes the formation of fumarate from aspartate YP_167874.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_167875.1 Assignment partly based on membership in polar amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_167876.1 identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_167877.1 Assignment partly based on membership in polar amino acid ABC transporter gene cluster and on multiple alignment to members of TCDB family 3.A.1.3.; identified by similarity to SP:P37902; match to protein family HMM PF00497 YP_167878.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_167879.1 identified by match to protein family HMM PF03171 YP_167880.1 identified by similarity to SP:P29743; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_167881.1 identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_167882.1 identified by match to protein family HMM PF00005 YP_167883.1 identified by match to protein family HMM PF04403 YP_167884.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_167885.1 identified by similarity to SP:P08550; match to protein family HMM PF02674 YP_167887.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_167889.1 identified by match to protein family HMM PF00106 YP_167890.1 identified by similarity to GB:BAB48529.1; match to protein family HMM PF05673 YP_167891.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_167892.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_167893.1 identified by match to protein family HMM PF02416 YP_167894.1 identified by similarity to GB:BAC96491.1 YP_167896.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_167897.1 identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_167898.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_167899.1 identified by similarity to SP:P21410; match to protein family HMM PF00005 YP_167900.1 identified by similarity to GB:CAB61860.1 YP_167901.1 identified by similarity to GB:CAD72185.1 YP_167902.1 identified by match to protein family HMM PF00106 YP_167903.1 identified by similarity to GB:AAN33954.1 YP_167904.1 identified by match to protein family HMM PF01322 YP_167905.1 identified by similarity to SP:Q56121; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_167906.1 identified by match to protein family HMM PF00144 YP_167907.1 identified by similarity to GB:AAN69320.1; similarity to GB:BAC79255.1; match to protein family HMM PF02629 YP_167908.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_167909.1 identified by match to protein family HMM PF00528 YP_167910.1 identified by match to protein family HMM PF00528 YP_167911.1 identified by match to protein family HMM TIGR01409 YP_167912.1 identified by match to protein family HMM PF00005 YP_167913.1 identified by similarity to PIR:G82972; match to protein family HMM PF05853 YP_167914.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_167915.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_167916.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA YP_167917.1 identified by match to protein family HMM PF00296 YP_167918.1 identified by match to protein family HMM PF00171 YP_167920.1 identified by similarity to GB:AAR21628.1; match to protein family HMM PF00561 YP_167921.1 identified by match to protein family HMM PF01613; match to protein family HMM PF02515 YP_167922.1 identified by similarity to PIR:C95315; match to protein family HMM PF06684 YP_167923.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_167924.1 identified by similarity to GB:CAD78905.1; match to protein family HMM PF02163 YP_167925.1 identified by match to protein family HMM PF01590 YP_167926.1 identified by match to protein family HMM PF00353; match to protein family HMM PF02412; match to protein family HMM TIGR01409; match to protein family HMM TIGR01451 YP_167927.1 identified by similarity to GB:AAC97196.1; match to protein family HMM PF07277 YP_167928.1 identified by similarity to GB:CAD84993.1 YP_167929.1 identified by similarity to GB:AAN87700.1 YP_167937.1 identified by similarity to PIR:F97477 YP_167938.1 identified by similarity to PIR:H97795 YP_167939.1 identified by match to protein family HMM PF01609 YP_167940.1 identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497 YP_167941.1 identified by similarity to SP:P05719; match to protein family HMM PF01420 YP_167942.1 identified by match to protein family HMM PF04313; match to protein family HMM TIGR00348 YP_167943.1 identified by similarity to GB:BAD02160.1; match to protein family HMM PF01863 YP_167944.1 identified by similarity to GB:CAD79234.1 YP_167946.1 identified by similarity to SP:P08506; match to protein family HMM PF00768 YP_167947.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_167948.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_167949.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_167950.1 identified by similarity to GB:AAK23796.1 YP_167951.1 identified by similarity to GB:AAC45458.1; match to protein family HMM PF03547 YP_167952.1 identified by similarity to GB:AAS06255.1 YP_167954.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_167955.1 identified by similarity to PIR:AG2090 YP_167956.1 identified by similarity to GB:AAQ58806.1 YP_167957.1 identified by match to protein family HMM PF06253 YP_167958.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_167959.1 identified by similarity to GB:AAN33802.1 YP_167960.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_167961.1 identified by similarity to GB:AAK24713.1 YP_167963.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_167964.1 identified by match to protein family HMM PF00036 YP_167965.1 identified by similarity to GB:CAE28567.1 YP_167966.1 identified by match to protein family HMM PF00293 YP_167967.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_167968.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_167969.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_167970.1 Catalyzes the transfer of electrons from NADH to quinone YP_167971.1 Catalyzes the transfer of electrons from NADH to quinone YP_167972.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_167973.1 Catalyzes the transfer of electrons from NADH to quinone YP_167974.1 Catalyzes the transfer of electrons from NADH to quinone YP_167975.1 identified by match to protein family HMM PF02627 YP_167976.1 identified by similarity to GB:AAN30033.1 YP_167977.1 Catalyzes the transfer of electrons from NADH to quinone YP_167979.1 Catalyzes the transfer of electrons from NADH to quinone YP_167981.1 Catalyzes the transfer of electrons from NADH to quinone YP_167982.1 identified by similarity to SP:P29909 YP_167984.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_167985.1 identified by similarity to SP:P29907 YP_167987.1 catalyzes the transfer of electrons from NADH to ubiquinone YP_167989.1 Catalyzes the transfer of electrons from NADH to quinone YP_167991.1 Catalyzes the transfer of electrons from NADH to quinone YP_167992.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_167993.1 Catalyzes the transfer of electrons from NADH to quinone YP_167994.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_167995.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_167996.1 identified by similarity to SP:Q96RQ3; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_167997.1 identified by match to protein family HMM PF00565 YP_167998.1 identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039 YP_167999.1 identified by similarity to SP:P39062; match to protein family HMM PF00501 YP_168000.1 identified by similarity to SP:P17266; match to protein family HMM PF03922 YP_168001.1 identified by similarity to SP:P26440; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_168003.1 identified by match to protein family HMM PF01041 YP_168004.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_168005.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_168006.1 identified by similarity to PIR:AG1725 YP_168007.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_168008.1 identified by similarity to SP:P23282; match to protein family HMM PF04413 YP_168009.1 identified by similarity to SP:O68547; match to protein family HMM PF00534 YP_168010.1 identified by match to protein family HMM PF02608 YP_168011.1 identified by match to protein family HMM PF00005 YP_168012.1 identified by match to protein family HMM PF02653 YP_168013.1 identified by match to protein family HMM PF02653 YP_168014.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_168015.1 identified by similarity to GB:AAQ87176.1 YP_168016.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_168017.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_168018.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_168019.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891 YP_168020.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_168021.1 identified by match to protein family HMM PF00005 YP_168022.1 identified by similarity to SP:P42061; match to protein family HMM PF00496 YP_168023.1 identified by similarity to SP:P42062; match to protein family HMM PF00528 YP_168024.1 identified by similarity to SP:P42063; match to protein family HMM PF00528 YP_168025.1 identified by similarity to GB:CAE29903.1; match to protein family HMM PF04143 YP_168026.1 identified by similarity to GB:CAE26946.1 YP_168027.1 identified by match to protein family HMM PF02233 YP_168028.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_168029.1 identified by match to protein family HMM PF04140 YP_168030.1 identified by similarity to GB:CAD33969.1 YP_168031.1 identified by similarity to SP:O86034; match to protein family HMM PF00106 YP_168032.1 identified by similarity to SP:Q16719; match to protein family HMM TIGR01814 YP_168033.1 identified by match to protein family HMM PF00440 YP_168034.1 identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_168035.1 identified by similarity to SP:Q51698; match to protein family HMM PF02738; match to protein family HMM TIGR01409 YP_168036.1 identified by match to protein family HMM PF00353 YP_168037.1 identified by similarity to SP:O85304; match to protein family HMM PF03577 YP_168038.1 identified by similarity to GB:AAN53028.1 YP_168039.1 identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_168040.1 identified by similarity to SP:P24136; similarity to SP:P26905; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_168041.1 identified by match to protein family HMM PF00528 YP_168042.1 Assignment partly based on membership in dipeptide ABC transporter gene cluster.; identified by similarity to SP:P37316; match to protein family HMM PF00528 YP_168043.1 Assignment partly based on membership in dipeptide ABC transporter gene cluster.; identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_168044.1 identified by match to protein family HMM PF01381 YP_168045.1 identified by similarity to GB:BAB51661.1 YP_168046.1 identified by similarity to GB:BAB50596.1; match to protein family HMM PF03928 YP_168047.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_168048.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_168049.1 identified by similarity to SP:P37893; match to protein family HMM PF01433 YP_168050.1 identified by match to protein family HMM PF00106 YP_168054.1 identified by similarity to GB:BAC88423.1 YP_168055.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_168056.1 identified by similarity to SP:P51702 YP_168057.1 identified by similarity to SP:P15298; match to protein family HMM PF01722 YP_168058.1 identified by match to protein family HMM PF00226 YP_168059.1 identified by similarity to PIR:T03518 YP_168060.1 identified by similarity to SP:P94139 YP_168061.1 identified by match to protein family HMM PF06383; match to protein family HMM TIGR01650 YP_168062.1 identified by similarity to SP:P43270; match to protein family HMM PF00565 YP_168063.1 identified by similarity to SP:P29934; match to protein family HMM TIGR01651 YP_168065.1 identified by match to protein family HMM PF00557 YP_168066.1 identified by similarity to GB:BAC50981.1; match to protein family HMM PF04248 YP_168067.1 identified by similarity to SP:P23523 YP_168068.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168069.1 identified by similarity to PIR:AE2921 YP_168070.1 identified by similarity to SP:P29937; match to protein family HMM PF02492; match to protein family HMM PF07683 YP_168071.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_168072.1 identified by similarity to SP:P21637; match to protein family HMM PF03460 YP_168073.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_168074.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01467 YP_168075.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_168076.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_168077.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01468 YP_168079.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_168080.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_168081.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_168082.1 catalyzes the formation of precorrin 6x from precorrin 5 YP_168083.1 identified by similarity to GB:AAO56638.1 YP_168085.1 identified by similarity to PIR:T36736 YP_168086.1 identified by similarity to GB:BAC48526.1 YP_168087.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168088.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis YP_168089.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_168090.1 identified by match to protein family HMM PF00701 YP_168091.1 thiamine-pyrophosphate requiring enzyme YP_168093.1 identified by similarity to SP:P27696; match to protein family HMM PF00205; match to protein family HMM PF02776 YP_168094.1 identified by match to protein family HMM PF02515 YP_168095.1 identified by similarity to GB:CAE31162.1 YP_168097.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_168098.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_168099.1 identified by similarity to GB:AAA85939.1 YP_168100.1 identified by similarity to GB:AAM38343.1 YP_168101.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_168102.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_168103.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_168104.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_168105.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_168106.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_168107.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02769 YP_168108.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_168109.1 identified by similarity to GB:AAR33375.1; match to protein family HMM PF02586 YP_168110.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_168111.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00685 YP_168112.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_168113.1 identified by similarity to GB:CAC45122.1; match to protein family HMM PF06108 YP_168114.1 identified by similarity to GB:CAE26026.1 YP_168115.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_168116.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_168117.1 identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_168118.1 identified by match to protein family HMM PF03061 YP_168119.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_168120.1 identified by match to protein family HMM PF00376 YP_168122.1 identified by match to protein family HMM PF00376 YP_168123.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_168125.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_168126.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_168127.1 identified by similarity to GB:BAC49273.1 YP_168128.1 identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_168129.1 identified by similarity to GB:AAA70414.1 YP_168130.1 identified by similarity to PIR:B95911 YP_168131.1 identified by match to protein family HMM PF00892 YP_168132.1 identified by similarity to GB:BAC52505.1 YP_168134.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_168135.1 catalyzes the formation of inosine from adenosine YP_168136.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_168137.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_168138.1 identified by similarity to SP:P19079; match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_168139.1 identified by similarity to GB:BAC50887.1 YP_168140.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_168141.1 identified by similarity to GB:BAB50467.1; match to protein family HMM PF04828 YP_168142.1 identified by similarity to SP:P77495; match to protein family HMM PF00501 YP_168145.1 identified by match to protein family HMM PF02630 YP_168146.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_168147.1 catalyzes the phosphorylation of NAD to NADP YP_168148.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_168151.1 identified by match to protein family HMM PF00561 YP_168153.1 identified by match to protein family HMM PF00581 YP_168154.1 identified by similarity to GB:AAB50013.1 YP_168155.1 identified by match to protein family HMM PF00190 YP_168156.1 identified by match to protein family HMM PF00165 YP_168157.1 identified by match to protein family HMM PF01042 YP_168158.1 identified by similarity to GB:AAQ65571.1; match to protein family HMM PF04536 YP_168159.1 identified by similarity to PIR:G97655; match to protein family HMM PF03724 YP_168160.1 identified by match to protein family HMM PF02080 YP_168161.1 identified by match to protein family HMM PF00149 YP_168162.1 identified by match to protein family HMM PF01812 YP_168163.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_168164.1 Catalyzes the deamination of guanine YP_168165.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_168166.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR02067 YP_168167.1 identified by match to protein family HMM PF01381 YP_168168.1 identified by match to protein family HMM PF00107 YP_168169.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168170.1 identified by similarity to GB:AAO55291.1 YP_168171.1 identified by match to protein family HMM PF01027 YP_168173.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_168174.1 identified by match to protein family HMM PF01510 YP_168176.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_168177.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_168178.1 identified by match to protein family HMM TIGR01409 YP_168180.1 identified by similarity to GB:CAE27781.1 YP_168181.1 identified by similarity to GB:BAB51018.1 YP_168182.1 identified by match to protein family HMM PF00753 YP_168183.1 identified by match to protein family HMM PF00211 YP_168184.1 identified by match to protein family HMM PF00211 YP_168186.1 identified by match to protein family HMM PF04371 YP_168187.1 identified by similarity to GB:CAC67530.1 YP_168188.1 identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_168189.1 identified by match to protein family HMM PF00383 YP_168190.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_168192.1 identified by similarity to GB:AAB93480.1 YP_168193.1 identified by similarity to GB:AAB93481.1 YP_168194.1 identified by similarity to GB:CAD18447.1 YP_168195.1 identified by similarity to SP:P16670; match to protein family HMM PF01292 YP_168196.1 identified by similarity to PIR:F83875 YP_168197.1 identified by match to protein family HMM PF00881 YP_168198.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_168199.1 identified by match to protein family HMM PF05161 YP_168200.1 identified by similarity to PIR:I40217; match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_168201.1 identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_168202.1 identified by match to protein family HMM PF00528 YP_168203.1 identified by similarity to SP:P37315; match to protein family HMM PF00528 YP_168204.1 identified by match to protein family HMM PF00005 YP_168206.1 identified by similarity to GB:BAB51623.1 YP_168208.1 identified by similarity to GB:AAC38151.1 YP_168209.1 activates fatty acids by binding to coenzyme A YP_168210.1 identified by match to protein family HMM PF01476; match to protein family HMM PF04972 YP_168211.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_168212.1 identified by match to protein family HMM PF00515 YP_168213.1 identified by similarity to SP:Q52710; match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_168214.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain YP_168215.1 identified by match to protein family HMM PF01694 YP_168216.1 identified by similarity to SP:P22783; match to protein family HMM PF00459 YP_168217.1 identified by match to protein family HMM PF00107 YP_168219.1 identified by similarity to SP:P19797; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168220.1 identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_168221.1 identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_168222.1 identified by similarity to GB:AAK24661.1 YP_168223.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_168224.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168225.1 identified by match to protein family HMM PF05721 YP_168226.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_168227.1 identified by similarity to PIR:C83757 YP_168228.1 identified by match to protein family HMM PF00211; match to protein family HMM PF00561 YP_168229.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_168230.1 identified by match to protein family HMM PF03088 YP_168231.1 catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate YP_168233.1 identified by similarity to SP:O08374; match to protein family HMM PF00266 YP_168234.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_168235.1 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_168236.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_168237.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_168238.1 identified by similarity to SP:P37177; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_168239.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 YP_168240.1 identified by match to protein family HMM PF00753 YP_168241.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00126 YP_168242.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_168244.1 identified by match to protein family HMM PF00497 YP_168245.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_168246.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_168247.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_168248.1 identified by match to protein family HMM PF00126 YP_168249.1 identified by match to protein family HMM PF00117 YP_168250.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_168251.1 identified by similarity to SP:P37315; match to protein family HMM PF00528 YP_168252.1 Assignment partly based on membership in dipeptide ABC transporter gene cluster.; identified by match to protein family HMM PF00528 YP_168253.1 Assignment partly based on membership in dipeptide ABC transporter gene cluster.; identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_168255.1 identified by match to protein family HMM PF00106 YP_168256.1 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 YP_168257.1 identified by match to protein family HMM PF00293 YP_168258.1 identified by similarity to GB:CAD71689.1 YP_168259.1 identified by match to protein family HMM PF00583 YP_168260.1 identified by similarity to GB:AAN29988.1 YP_168261.1 identified by similarity to GB:AAN77593.1; match to protein family HMM PF00132 YP_168262.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_168264.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate YP_168265.1 identified by similarity to PIR:H95891 YP_168266.1 identified by similarity to SP:P27847; match to protein family HMM PF01810 YP_168267.1 identified by similarity to GB:AAM37286.1 YP_168269.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_168270.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_168271.1 identified by similarity to GB:CAC47333.1 YP_168272.1 identified by similarity to SP:P09454; match to protein family HMM PF00583 YP_168273.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_168274.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_168276.1 identified by match to protein family HMM PF00510 YP_168277.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_168278.1 converts protoheme IX and farnesyl diphosphate to heme O YP_168279.1 identified by similarity to SP:P08306; match to protein family HMM PF00116; match to protein family HMM PF02790 YP_168280.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_168281.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_168282.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_168283.1 identified by match to protein family HMM PF00440 YP_168284.1 identified by match to protein family HMM PF00903 YP_168285.1 identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144 YP_168286.1 identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144 YP_168287.1 identified by match to protein family HMM PF01464 YP_168289.1 identified by match to protein family HMM PF06981 YP_168290.1 identified by match to protein family HMM PF00263 YP_168291.1 identified by match to protein family HMM PF00691 YP_168293.1 identified by similarity to GB:AAN75211.1; match to protein family HMM PF00437 YP_168294.1 identified by match to protein family HMM PF00482 YP_168295.1 identified by match to protein family HMM PF00482 YP_168296.1 identified by similarity to GB:CAE29125.1; match to protein family HMM PF00515 YP_168299.1 identified by similarity to GB:BAC95426.1 YP_168300.1 identified by similarity to GB:AAA50312.1 YP_168301.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_168302.1 identified by similarity to GB:BAC46414.1 YP_168303.1 identified by similarity to GB:AAN30398.1 YP_168304.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_168305.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01803 YP_168306.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_168307.1 identified by match to protein family HMM PF03473 YP_168308.1 identified by similarity to GB:CAB51029.1; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_168309.1 identified by match to protein family HMM PF01171 YP_168310.1 identified by similarity to GB:AAO57429.1 YP_168311.1 identified by similarity to SP:P07176; match to protein family HMM PF00691 YP_168312.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_168314.1 identified by match to protein family HMM PF02472 YP_168315.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_168316.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_168318.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_168319.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_168320.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_168321.1 identified by similarity to GB:CAC46124.1; match to protein family HMM PF06568 YP_168323.1 identified by similarity to SP:P28637; match to protein family HMM PF06325 YP_168324.1 identified by match to protein family HMM PF01554 YP_168325.1 identified by similarity to GB:BAC62827.1 YP_168326.1 identified by similarity to SP:P33015; match to protein family HMM PF04143 YP_168327.1 identified by similarity to GB:CAC46680.1; match to protein family HMM PF03640 YP_168328.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR01199 YP_168329.1 identified by similarity to GB:AAF81073.1 YP_168330.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_168331.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_168332.1 identified by similarity to GB:AAK22332.1 YP_168333.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_168334.1 identified by similarity to SP:Q9KJY8; match to protein family HMM PF01066 YP_168335.1 identified by similarity to GB:AAQ87450.1 YP_168337.1 identified by similarity to SP:P11742; match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_168338.1 identified by match to protein family HMM PF03576 YP_168339.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_168341.1 identified by similarity to GB:BAC19465.1; match to protein family HMM PF01988 YP_168343.1 identified by similarity to GB:BAB48295.1; match to protein family HMM TIGR01620 YP_168344.1 identified by match to protein family HMM PF00583 YP_168345.1 identified by similarity to GB:CAC46385.1 YP_168346.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_168347.1 identified by similarity to GB:BAB48071.1 YP_168348.1 identified by similarity to PIR:AD2899; match to protein family HMM PF07446 YP_168349.1 identified by match to protein family HMM PF07446 YP_168350.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_168352.1 identified by similarity to GB:CAE31907.1; match to protein family HMM PF04828 YP_168353.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_168354.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460 YP_168355.1 identified by match to protein family HMM PF01575 YP_168356.1 identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360 YP_168357.1 identified by similarity to SP:P73651; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 YP_168358.1 identified by similarity to SP:O68068; match to protein family HMM PF05779 YP_168359.1 identified by similarity to SP:O50584 YP_168360.1 identified by match to protein family HMM PF00561 YP_168361.1 identified by similarity to SP:Q51948; match to protein family HMM PF01323 YP_168362.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_168363.1 identified by similarity to GB:CAA67912.1 YP_168364.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_168365.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_168366.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_168367.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_168368.1 identified by similarity to SP:P05437; match to protein family HMM PF00213; match to protein family HMM TIGR01145 YP_168370.1 identified by similarity to PIR:AC3001 YP_168371.1 identified by match to protein family HMM PF00753 YP_168372.1 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_168373.1 identified by match to protein family HMM PF01551 YP_168374.1 identified by match to protein family HMM PF00691 YP_168375.1 identified by similarity to GB:BAC46776.1 YP_168376.1 identified by similarity to SP:P39163; match to protein family HMM PF04752 YP_168377.1 identified by similarity to GB:AAK24192.1 YP_168378.1 identified by similarity to GB:AAO55033.1 YP_168379.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate YP_168380.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_168382.1 identified by match to protein family HMM PF01037 YP_168383.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_168384.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_168385.1 identified by similarity to PIR:T03518 YP_168386.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_168387.1 identified by match to protein family HMM PF00583 YP_168388.1 identified by match to protein family HMM PF00392 YP_168389.1 identified by similarity to SP:P54417; match to protein family HMM PF02028 YP_168390.1 identified by match to protein family HMM PF02615 YP_168391.1 identified by similarity to GB:AAN68298.1 YP_168392.1 identified by similarity to GB:AAN68299.1 YP_168393.1 identified by match to protein family HMM PF01244 YP_168394.1 identified by match to protein family HMM PF00171 YP_168395.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168396.1 identified by similarity to GB:BAB48214.1 YP_168397.1 identified by match to protein family HMM PF02867 YP_168398.1 identified by match to protein family HMM PF00850 YP_168399.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_168400.1 identified by similarity to GB:BAB54274.1 YP_168401.1 identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636 YP_168402.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_168403.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_168404.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_168405.1 identified by similarity to PIR:G97485 YP_168406.1 identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_168407.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_168408.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_168409.1 identified by similarity to GB:AAK23529.1; match to protein family HMM PF01936 YP_168410.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_168411.1 identified by match to protein family HMM PF00043 YP_168412.1 identified by match to protein family HMM PF01810 YP_168413.1 identified by similarity to GB:AAK24940.1 YP_168414.1 identified by similarity to GB:AAK23900.1 YP_168415.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_168416.1 identified by similarity to PIR:F97377; match to protein family HMM PF03458 YP_168419.1 identified by similarity to SP:O85732; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_168420.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_168421.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_168422.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_168423.1 identified by match to protein family HMM PF00155 YP_168425.1 identified by similarity to PIR:T45023 YP_168426.1 identified by match to protein family HMM PF00072 YP_168427.1 identified by similarity to SP:P21633 YP_168428.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_168429.1 identified by similarity to PIR:D97614 YP_168431.1 identified by similarity to GB:CAD66603.1; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470 YP_168433.1 identified by match to protein family HMM PF00155 YP_168434.1 identified by similarity to SP:P06957; match to protein family HMM PF00392 YP_168436.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel. YP_168437.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B' is part of the membrane proton channel. YP_168438.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_168439.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_168440.1 identified by similarity to GB:CAA72980.1 YP_168441.1 identified by match to protein family HMM PF01022 YP_168442.1 identified by similarity to GB:CAE09829.1; match to protein family HMM PF00892 YP_168443.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168445.1 identified by similarity to GB:CAC47762.1; match to protein family HMM PF04073 YP_168446.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_168447.1 catalyzes the formation of oxaloacetate from L-aspartate YP_168448.1 identified by similarity to SP:P39666; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_168449.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_168450.1 identified by match to protein family HMM PF00583 YP_168451.1 identified by match to protein family HMM PF00583 YP_168452.1 identified by match to protein family HMM PF00583 YP_168453.1 identified by match to protein family HMM PF00583 YP_168454.1 identified by similarity to PIR:B97652 YP_168455.1 catalyzes the interconversion of chorismate to prephenate YP_168456.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_168457.1 identified by similarity to PIR:S52225; match to protein family HMM PF00881 YP_168458.1 Essential for efficient processing of 16S rRNA YP_168459.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_168460.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_168461.1 identified by match to protein family HMM PF01183 YP_168462.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_168463.1 identified by similarity to GB:AAD44211.1 YP_168464.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_168465.1 identified by match to protein family HMM PF01047 YP_168467.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_168468.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_168469.1 identified by match to protein family HMM PF01645 YP_168472.1 identified by similarity to GB:CAE20608.1 YP_168473.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_168474.1 identified by similarity to GB:AAN69029.1 YP_168475.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_168476.1 identified by match to protein family HMM PF00293 YP_168477.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_168478.1 identified by similarity to SP:Q02886; match to protein family HMM PF05163 YP_168479.1 identified by match to protein family HMM PF05013 YP_168480.2 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_168482.1 identified by similarity to SP:P51691; match to protein family HMM PF00884 YP_168483.1 identified by match to protein family HMM PF01547 YP_168484.1 identified by match to protein family HMM PF00528 YP_168485.1 identified by similarity to GB:AAF26285.1 YP_168486.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00005 YP_168487.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster. YP_168488.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF02653 YP_168489.1 identified by similarity to GB:AAM36995.1 YP_168490.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF02653 YP_168491.1 Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.; identified by match to protein family HMM PF00005 YP_168492.1 identified by match to protein family HMM PF00501 YP_168493.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_168494.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_168495.1 identified by match to protein family HMM PF00440 YP_168496.1 identified by similarity to PIR:AD0744 YP_168497.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168498.1 identified by similarity to GB:BAC50637.1 YP_168499.1 identified by match to protein family HMM PF00657 YP_168500.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_168501.1 identified by match to protein family HMM PF00300 YP_168502.1 identified by similarity to GB:AAC44159.1; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_168503.1 identified by similarity to SP:P43065; match to protein family HMM PF01262; match to protein family HMM PF05222 YP_168504.1 identified by similarity to GB:BAC51725.1 YP_168505.1 identified by similarity to SP:Q9P4R4; match to protein family HMM PF03435 YP_168506.1 identified by similarity to GB:BAC53154.1 YP_168507.1 identified by similarity to SP:P06134; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM TIGR00589 YP_168508.1 identified by similarity to GB:CAC41875.1 YP_168509.1 identified by match to protein family HMM PF01381 YP_168510.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_168511.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168514.1 identified by similarity to GB:AAH10441.1 YP_168515.1 identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485 YP_168516.1 identified by similarity to GB:AAO54466.1 YP_168518.1 identified by similarity to GB:CAC46971.1 YP_168519.1 identified by similarity to GB:CAC46974.1 YP_168520.1 identified by similarity to GB:CAC46975.1 YP_168521.1 identified by similarity to GB:BAB49806.1 YP_168522.1 identified by similarity to GB:BAB54345.1; match to protein family HMM PF05899 YP_168523.1 identified by similarity to SP:P38488; match to protein family HMM PF00557; match to protein family HMM PF01321 YP_168524.1 identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_168525.1 identified by match to protein family HMM PF00042 YP_168526.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_168527.1 identified by similarity to GB:AAN40802.1; match to protein family HMM PF05143 YP_168528.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_168529.1 identified by similarity to GB:AAR38409.1 YP_168531.1 identified by similarity to SP:P10344; match to protein family HMM PF00497 YP_168533.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_168534.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_168535.1 identified by match to protein family HMM PF02632 YP_168536.1 identified by match to protein family HMM PF00392 YP_168537.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_168538.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_168540.1 catalyzes the formation of cysteine and 2-oxobutanoate from cystathionine YP_168542.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_168543.1 identified by similarity to SP:P42879 YP_168544.1 identified by similarity to GB:CAD85590.1 YP_168545.1 identified by similarity to GB:AAF00929.1; match to protein family HMM PF06089 YP_168546.1 identified by similarity to GB:BAB50844.1 YP_168547.1 identified by similarity to PIR:G96031; match to protein family HMM PF05146 YP_168548.1 identified by match to protein family HMM PF01022 YP_168549.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_168550.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_168551.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_168552.1 identified by similarity to GB:BAB50697.1 YP_168553.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168554.1 identified by similarity to GB:AAC46052.1; match to protein family HMM PF00149 YP_168555.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_168556.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_168557.1 identified by similarity to GB:BAB51420.1; match to protein family HMM PF02646 YP_168558.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_168559.1 identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950 YP_168560.1 identified by similarity to GB:AAS11742.1; match to protein family HMM PF00950 YP_168561.1 identified by similarity to SP:P96117; match to protein family HMM PF00005 YP_168562.1 identified by similarity to SP:P96116; match to protein family HMM PF01297 YP_168563.1 identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126 YP_168564.1 identified by match to protein family HMM PF00171 YP_168565.1 identified by match to protein family HMM PF00106 YP_168566.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_168567.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_168569.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_168570.1 involved in de novo purine biosynthesis YP_168571.1 identified by similarity to GB:BAB50839.1 YP_168572.1 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189 YP_168573.1 identified by similarity to GB:AAN30707.1 YP_168574.1 identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_168575.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168576.1 identified by similarity to SP:P80193; match to protein family HMM PF03322 YP_168577.1 identified by similarity to GB:BAB48813.1 YP_168578.1 identified by match to protein family HMM PF00171 YP_168579.1 identified by similarity to GB:BAC00970.1; match to protein family HMM PF00578 YP_168580.1 identified by match to protein family HMM TIGR01444 YP_168581.1 identified by match to protein family HMM PF01755 YP_168583.1 identified by similarity to GB:AAK01513.1 YP_168584.1 identified by match to protein family HMM PF00440 YP_168585.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_168586.1 identified by similarity to PIR:AH2948 YP_168587.1 identified by similarity to GB:AAC99764.1; match to protein family HMM PF01531 YP_168588.1 identified by similarity to SP:P39219; match to protein family HMM PF00849 YP_168589.1 identified by similarity to GB:BAC68979.1 YP_168590.1 identified by match to protein family HMM PF00657 YP_168591.1 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_168592.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01571 YP_168593.1 identified by match to protein family HMM PF00165 YP_168594.1 identified by match to protein family HMM PF02574 YP_168595.1 identified by match to protein family HMM PF00107 YP_168596.1 identified by match to protein family HMM PF01571 YP_168597.1 identified by similarity to GB:BAB48331.1; match to protein family HMM PF04828 YP_168598.1 identified by similarity to SP:P27847; match to protein family HMM PF01810 YP_168599.1 identified by match to protein family HMM PF01381 YP_168600.1 identified by similarity to GB:AAQ58177.1; match to protein family HMM PF06961 YP_168601.1 identified by similarity to GB:AAM38460.1 YP_168602.1 identified by match to protein family HMM PF00440 YP_168604.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_168605.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_168606.1 identified by similarity to SP:P17904; match to protein family HMM PF02518 YP_168607.1 identified by match to protein family HMM PF01019 YP_168608.1 identified by similarity to GB:AAN33763.1; match to protein family HMM TIGR02097 YP_168609.1 identified by match to protein family HMM PF03547 YP_168611.1 identified by match to protein family HMM PF03548 YP_168612.1 identified by match to protein family HMM PF01580 YP_168613.1 identified by match to protein family HMM PF00155 YP_168614.1 identified by match to protein family HMM PF01425 YP_168615.1 identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988 YP_168616.1 identified by similarity to GB:BAB50604.1 YP_168617.1 identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966 YP_168618.1 identified by match to protein family HMM PF02190 YP_168619.1 identified by match to protein family HMM PF00085 YP_168620.1 identified by match to protein family HMM PF00560 YP_168621.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633 YP_168622.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_168623.1 identified by similarity to SP:P43525; match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_168624.1 identified by similarity to GB:BAB50941.1 YP_168625.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_168626.1 identified by similarity to GB:CAA70599.1 YP_168627.1 identified by similarity to GB:AAK25710.1 YP_168628.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_168630.1 identified by similarity to GB:CAE25733.1 YP_168631.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_168632.1 identified by similarity to GB:CAE27628.1 YP_168633.1 identified by match to protein family HMM PF00924 YP_168634.1 identified by similarity to GB:CAD55640.1 YP_168635.1 identified by match to protein family HMM PF00378 YP_168636.1 identified by similarity to SP:P19992; match to protein family HMM PF00106 YP_168637.1 identified by similarity to GB:AAC02256.1 YP_168638.1 identified by similarity to SP:P24231 YP_168639.1 identified by similarity to SP:P22783; match to protein family HMM PF00459 YP_168640.1 identified by similarity to SP:P23282 YP_168641.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_168642.1 identified by match to protein family HMM PF01323 YP_168643.1 identified by similarity to GB:CAE29927.1 YP_168644.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_168645.1 identified by match to protein family HMM PF00487 YP_168646.1 identified by match to protein family HMM PF00211 YP_168647.1 identified by match to protein family HMM PF01555 YP_168648.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_168651.1 identified by match to protein family HMM PF00211; match to protein family HMM PF04248 YP_168652.1 identified by similarity to PIR:AC3648 YP_168653.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_168654.1 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_168655.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_168656.1 identified by similarity to PIR:E98268 YP_168657.1 identified by similarity to SP:P75942 YP_168658.1 identified by match to protein family HMM PF02120 YP_168659.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of many flagellar genes; the Rhodobacter protein in this cluster is associated with a set of flagellar genes acquired by lateral gene transfer; these genes are not normally expressed YP_168660.1 identified by similarity to GB:CAB76068.1 YP_168661.1 identified by similarity to GB:CAE33186.1 YP_168662.1 identified by similarity to SP:P31136; match to protein family HMM PF00528 YP_168663.1 identified by similarity to SP:P31135; match to protein family HMM PF00528 YP_168664.1 identified by similarity to SP:P31134; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR01187 YP_168665.1 identified by similarity to SP:P31133; match to protein family HMM PF01547 YP_168666.1 identified by match to protein family HMM PF00392 YP_168667.1 identified by similarity to SP:Q53196; match to protein family HMM PF00202 YP_168668.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_168669.1 Assignment partly based on membership in polyamine ABC transporter gene cluster.; identified by match to protein family HMM PF01547 YP_168670.1 Assignment based partly on membership in polyamine ABC transporter gene cluster.; identified by match to protein family HMM PF00528 YP_168671.1 identified by similarity to SP:P23859; match to protein family HMM PF00528 YP_168673.1 identified by similarity to GB:BAB48216.1 YP_168674.1 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913 YP_168675.1 identified by similarity to SP:P52073; match to protein family HMM PF01565 YP_168676.1 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_168678.1 identified by match to protein family HMM PF00089 YP_168679.1 identified by similarity to PIR:E85765 YP_168680.1 identified by match to protein family HMM PF00011 YP_168681.1 identified by similarity to GB:AAN48213.1 YP_168682.1 identified by similarity to PIR:B83165 YP_168683.1 identified by similarity to PIR:AB3193 YP_168684.1 identified by match to protein family HMM PF01471 YP_168685.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_168686.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_168687.1 identified by match to protein family HMM PF01209 YP_168688.1 identified by similarity to GB:BAC17897.1 YP_168690.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_168691.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_168692.1 identified by similarity to GB:BAC95620.1; match to protein family HMM PF00924 YP_168693.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_168694.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_168695.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_168696.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_168698.1 identified by similarity to GB:AAC44076.1 YP_168699.1 identified by match to protein family HMM PF00892 YP_168701.1 identified by match to protein family HMM PF01381 YP_168702.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_168703.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_168704.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_168705.2 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_168708.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_168709.1 binds directly to 23S ribosomal RNA YP_168710.1 identified by similarity to GB:AAR38409.1 YP_168711.1 identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_168712.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_168713.1 identified by similarity to GB:CAE28126.1 YP_168714.1 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847 YP_168715.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_168716.1 identified by similarity to SP:P18397 YP_168717.1 identified by similarity to SP:P18396; match to protein family HMM PF00037 YP_168718.1 identified by similarity to PIR:S77598; match to protein family HMM PF00034; match to protein family HMM TIGR00782 YP_168719.1 identified by similarity to GB:AAB02558.1; match to protein family HMM PF05545 YP_168720.1 CcoO; FixO YP_168721.1 CcoN; FixN YP_168722.1 identified by match to protein family HMM PF00582 YP_168723.1 identified by similarity to GB:BAB50217.1; match to protein family HMM PF04226 YP_168724.1 identified by match to protein family HMM PF00464 YP_168725.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168726.1 identified by similarity to SP:P51007; match to protein family HMM PF00027; match to protein family HMM PF00325 YP_168727.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_168728.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_168729.1 identified by similarity to SP:P33916; match to protein family HMM PF00005 YP_168730.1 identified by similarity to SP:P33915; match to protein family HMM PF00528 YP_168731.1 identified by match to protein family HMM PF00528 YP_168732.1 identified by match to protein family HMM PF00496 YP_168733.1 identified by similarity to SP:P54820; match to protein family HMM PF00034 YP_168734.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_168736.1 identified by match to protein family HMM PF00293 YP_168737.1 identified by similarity to SP:P08331; match to protein family HMM PF00149; match to protein family HMM PF02872 YP_168738.1 identified by similarity to GB:BAC96093.1 YP_168739.1 identified by similarity to GB:BAC49042.1 YP_168740.1 identified by match to protein family HMM PF00440 YP_168741.1 identified by match to protein family HMM PF04228 YP_168743.1 identified by similarity to GB:CAE29730.1 YP_168744.1 identified by similarity to GB:CAD13774.1 YP_168745.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_168746.1 identified by match to protein family HMM PF00583 YP_168747.1 identified by match to protein family HMM PF01266 YP_168748.1 identified by similarity to PIR:C75368; match to protein family HMM PF05430 YP_168749.1 identified by match to protein family HMM PF00892 YP_168750.1 identified by match to protein family HMM PF01464 YP_168751.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_168752.1 identified by match to protein family HMM PF04976 YP_168753.1 identified by match to protein family HMM PF00037 YP_168754.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_168755.1 identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651 YP_168756.1 catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source YP_168757.1 identified by match to protein family HMM PF00392 YP_168758.1 identified by match to protein family HMM PF01022 YP_168759.1 identified by match to protein family HMM PF03773 YP_168761.1 identified by similarity to GB:CAC47907.1 YP_168762.1 identified by match to protein family HMM PF00445 YP_168763.1 identified by similarity to PIR:D95307 YP_168764.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_168765.1 identified by similarity to PIR:A82247; match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_168766.1 identified by match to protein family HMM PF00165 YP_168767.1 identified by match to protein family HMM PF00857 YP_168768.1 identified by match to protein family HMM PF03358 YP_168769.1 identified by similarity to GB:CAD17119.1 YP_168770.1 identified by match to protein family HMM PF00376 YP_168771.1 identified by match to protein family HMM PF00691 YP_168772.1 identified by similarity to GB:BAB51517.1 YP_168773.1 identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_168774.1 identified by match to protein family HMM PF01047 YP_168775.1 identified by match to protein family HMM PF00857 YP_168776.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_168777.1 identified by match to protein family HMM PF00294 YP_168778.1 identified by similarity to SP:P42195; match to protein family HMM PF01047 YP_168779.1 identified by similarity to SP:P42194; match to protein family HMM PF00892 YP_168780.1 identified by match to protein family HMM PF00293 YP_168781.1 identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724 YP_168783.1 identified by similarity to GB:BAB51219.1; match to protein family HMM PF03992 YP_168784.1 identified by similarity to PIR:AH2740; match to protein family HMM PF06499 YP_168785.1 identified by similarity to PIR:B83607 YP_168786.1 identified by match to protein family HMM PF03547 YP_168787.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168788.1 identified by match to protein family HMM PF00884 YP_168789.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_168790.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_168791.1 identified by match to protein family HMM PF01243 YP_168792.1 identified by match to protein family HMM PF01593 YP_168793.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_168794.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_168795.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_168796.1 identified by match to protein family HMM PF05013 YP_168798.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_168799.1 identified by similarity to PIR:A31422; match to protein family HMM PF01063 YP_168800.1 identified by similarity to PIR:AD1992 YP_168801.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_168802.1 identified by similarity to GB:AAM01784.1 YP_168803.1 identified by similarity to GB:AAB58884.1; match to protein family HMM TIGR01588 YP_168804.1 identified by similarity to SP:P50197; match to protein family HMM PF00106 YP_168805.1 identified by similarity to GB:BAC74958.1 YP_168807.1 identified by match to protein family HMM PF01037 YP_168808.1 identified by match to protein family HMM PF01810 YP_168810.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_168811.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_168812.1 identified by match to protein family HMM PF01471 YP_168813.1 identified by similarity to SP:P75851; similarity to SP:Q47539; match to protein family HMM PF00528 YP_168814.1 identified by match to protein family HMM PF00005 YP_168816.1 identified by match to protein family HMM PF00392 YP_168817.1 identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863 YP_168818.1 identified by similarity to GB:CAE25504.1 YP_168819.1 identified by similarity to SP:P15277; match to protein family HMM PF00313 YP_168820.1 identified by match to protein family HMM PF04107; match to protein family HMM TIGR01436 YP_168822.1 identified by match to protein family HMM PF00583 YP_168823.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_168824.1 UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_168825.1 identified by match to protein family HMM PF00691 YP_168826.1 identified by similarity to GB:BAC45762.1 YP_168827.1 identified by similarity to SP:P30749; match to protein family HMM PF02391 YP_168828.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_168829.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_168831.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_168832.1 identified by match to protein family HMM PF00106 YP_168833.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_168834.1 identified by match to protein family HMM PF01343 YP_168835.1 identified by similarity to SP:P36880 YP_168836.1 identified by match to protein family HMM PF00005 YP_168837.1 identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240 YP_168838.1 identified by similarity to GB:CAE33392.1; match to protein family HMM PF00892 YP_168839.1 identified by similarity to GB:AAM35804.1 YP_168840.1 identified by match to protein family HMM PF01638 YP_168841.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_168842.1 identified by match to protein family HMM PF02515 YP_168843.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_168844.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_168845.1 identified by match to protein family HMM PF00211 YP_168846.1 identified by match to protein family HMM PF00487 YP_168848.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_168849.1 identified by similarity to SP:P25529; match to protein family HMM PF00106 YP_168850.1 identified by match to protein family HMM PF05175 YP_168851.1 identified by match to protein family HMM PF02617 YP_168852.1 identified by match to protein family HMM PF00702 YP_168853.1 identified by match to protein family HMM PF00768 YP_168854.1 identified by match to protein family HMM PF03746 YP_168856.1 identified by match to protein family HMM PF02682 YP_168858.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_168860.1 identified by match to protein family HMM PF03480 YP_168861.1 identified by match to protein family HMM PF01266 YP_168862.1 identified by similarity to PIR:T48870; match to protein family HMM PF01188; match to protein family HMM PF02746 YP_168863.1 identified by similarity to SP:P03030; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168864.1 identified by similarity to SP:P02918; match to protein family HMM PF00912 YP_168866.1 identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409 YP_168868.1 identified by match to protein family HMM PF00353 YP_168869.1 identified by match to protein family HMM PF01609 YP_168870.1 identified by similarity to PIR:AB0616 YP_168871.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_168872.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168873.1 identified by match to protein family HMM PF00355 YP_168874.1 identified by similarity to PIR:C82973; match to protein family HMM PF06267 YP_168875.1 identified by match to protein family HMM PF01042 YP_168876.1 identified by match to protein family HMM PF00355 YP_168877.1 identified by similarity to GB:CAE35157.1 YP_168878.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_168879.1 identified by similarity to PIR:H97450; match to protein family HMM PF06224 YP_168880.1 identified by match to protein family HMM PF03328 YP_168881.1 identified by match to protein family HMM PF00282 YP_168882.1 identified by match to protein family HMM PF00903 YP_168883.1 identified by match to protein family HMM PF01047 YP_168884.1 identified by similarity to GB:CAA12267.1 YP_168885.1 identified by match to protein family HMM PF01557 YP_168886.1 catalyzes the formation of catechol from salicylate YP_168887.1 identified by similarity to SP:P37735; match to protein family HMM PF03480 YP_168888.1 identified by similarity to GB:AAK03610.1 YP_168889.1 identified by match to protein family HMM PF06808 YP_168890.1 catalyzes the conversion of ferulic acid to feruloyl-CoA YP_168891.1 identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501 YP_168892.1 identified by similarity to GB:BAC55927.1 YP_168893.1 identified by similarity to GB:BAC46344.1 YP_168894.1 cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA YP_168895.1 identified by similarity to GB:AAN39376.1 YP_168897.1 identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175 YP_168898.1 consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate YP_168899.1 identified by similarity to GB:AAP25826.1; match to protein family HMM PF01094 YP_168900.1 identified by similarity to GB:CAE29839.1; match to protein family HMM PF00005 YP_168901.1 identified by similarity to SP:P30294; match to protein family HMM PF00005 YP_168902.1 identified by similarity to GB:AAP25830.1; match to protein family HMM PF02653 YP_168903.1 identified by similarity to GB:CAE29842.1; match to protein family HMM PF02653 YP_168904.1 identified by similarity to GB:BAC53043.1 YP_168906.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_168907.1 identified by similarity to GB:CAC38742.1 YP_168909.1 identified by similarity to SP:P17067; match to protein family HMM PF00484 YP_168911.1 identified by match to protein family HMM PF00883 YP_168912.1 identified by match to protein family HMM PF00877 YP_168913.1 identified by similarity to PIR:T52663; match to protein family HMM PF00581 YP_168914.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_168916.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_168917.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_168918.1 identified by match to protein family HMM PF00543 YP_168919.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_168920.1 identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409 YP_168921.1 identified by similarity to SP:P43262; match to protein family HMM PF04333 YP_168922.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842 YP_168923.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_168924.1 identified by match to protein family HMM PF01042 YP_168925.1 identified by similarity to SP:P10908; match to protein family HMM PF03009 YP_168926.1 identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339 YP_168927.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_168928.1 identified by match to protein family HMM PF00376 YP_168929.1 identified by similarity to SP:P21191; match to protein family HMM PF00083 YP_168930.1 identified by match to protein family HMM PF00578 YP_168931.1 identified by match to protein family HMM PF00070 YP_168932.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_168933.1 identified by match to protein family HMM PF01968; match to protein family HMM PF05378 YP_168934.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_168935.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_168936.1 identified by match to protein family HMM PF00255 YP_168937.1 identified by match to protein family HMM PF00892 YP_168938.1 identified by match to protein family HMM PF00216 YP_168939.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_168940.1 identified by similarity to SP:P39761; match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_168941.1 identified by similarity to GB:AAQ59692.1 YP_168942.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_168943.1 identified by match to protein family HMM PF00596 YP_168944.1 identified by similarity to GB:CAC47108.1 YP_168945.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_168946.1 identified by match to protein family HMM PF01242 YP_168947.1 identified by match to protein family HMM PF04055 YP_168948.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_168949.1 identified by similarity to GB:BAB51829.1 YP_168950.1 identified by similarity to GB:CAE28643.1 YP_168951.1 identified by match to protein family HMM PF00691 YP_168952.1 identified by match to protein family HMM TIGR00778; match to protein family HMM TIGR01926 YP_168953.1 identified by match to protein family HMM PF00583 YP_168954.1 identified by match to protein family HMM PF00994 YP_168955.1 Regulatory factor involved in maltose metabolism YP_168956.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_168957.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_168958.1 identified by match to protein family HMM PF00037 YP_168959.1 identified by match to protein family HMM PF02798 YP_168960.1 identified by similarity to PIR:D83153 YP_168961.1 identified by similarity to SP:P46022; match to protein family HMM PF00912; match to protein family HMM TIGR02070 YP_168962.1 identified by similarity to PIR:T03518 YP_168963.1 identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898 YP_168964.1 identified by similarity to PIR:AG2732; match to protein family HMM PF04828 YP_168965.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_168966.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell YP_168967.1 identified by similarity to SP:P34943 YP_168968.1 identified by match to protein family HMM PF00496 YP_168969.1 identified by similarity to SP:P37316; match to protein family HMM PF00528 YP_168970.1 identified by similarity to SP:P37315; match to protein family HMM PF00528 YP_168971.1 identified by similarity to SP:P76027; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_168972.1 identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_168973.1 identified by match to protein family HMM PF00126 YP_168974.1 identified by match to protein family HMM PF03739 YP_168975.1 identified by similarity to PIR:AB1999; match to protein family HMM TIGR02058 YP_168976.1 identified by similarity to PIR:AI1138; match to protein family HMM TIGR02058 YP_168977.1 identified by similarity to SP:P10907; match to protein family HMM PF00005 YP_168978.1 identified by similarity to SP:P02914; match to protein family HMM PF00005 YP_168979.1 identified by similarity to PIR:T46751; match to protein family HMM PF00528 YP_168980.1 identified by match to protein family HMM PF00528 YP_168981.1 Assignment partly based on membership in sugar ABC transporter gene cluster.; identified by match to protein family HMM TIGR01409 YP_168982.1 identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590 YP_168983.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_168984.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_168985.1 identified by similarity to SP:O34591; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_168986.1 identified by similarity to PIR:I40790; match to protein family HMM PF00676 YP_168987.1 identified by similarity to SP:P27748; match to protein family HMM PF01513 YP_168988.1 identified by similarity to GB:AAM35022.1 YP_168989.1 identified by similarity to SP:P26979; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963 YP_168990.1 identified by similarity to GB:BAC50760.1 YP_168991.1 identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199 YP_168992.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_168993.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_168994.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_168995.1 identified by similarity to GB:BAC45729.1 YP_168996.1 identified by similarity to GB:BAB48348.1 YP_168997.1 identified by match to protein family HMM PF01022 YP_168998.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_168999.1 identified by similarity to GB:AAK25396.1 YP_169000.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_169003.1 identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664 YP_169004.1 identified by match to protein family HMM PF02517 YP_169005.1 identified by similarity to SP:P08193; match to protein family HMM TIGR00515 YP_169006.1 identified by match to protein family HMM PF01225; match to protein family HMM TIGR01499 YP_169007.1 identified by match to protein family HMM PF03969 YP_169009.1 identified by match to protein family HMM PF02423 YP_169010.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_169011.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_169012.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_169013.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_169014.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_169015.1 identified by match to protein family HMM PF02639 YP_169016.1 catalyzes the conversion of NADPH to NADH YP_169017.1 identified by similarity to GB:AAC44554.1; match to protein family HMM PF00756 YP_169018.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_169019.1 identified by match to protein family HMM PF00561 YP_169020.1 identified by match to protein family HMM PF02423 YP_169021.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_169022.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_169023.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_169024.1 identified by similarity to GB:CAC46553.1 YP_169025.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_169026.1 identified by similarity to PIR:E95908 YP_169027.1 identified by match to protein family HMM PF00353 YP_169028.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_169029.1 identified by match to protein family HMM PF00440 YP_169030.1 identified by similarity to GB:AAN30579.1; match to protein family HMM PF01988 YP_169031.1 identified by similarity to GB:AAC45458.1; match to protein family HMM PF03547 YP_169032.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_169033.1 identified by similarity to GB:AAN56041.1 YP_169034.1 identified by similarity to GB:AAK22176.1 YP_169035.1 identified by similarity to GB:CAD16663.1; match to protein family HMM PF00005 YP_169036.1 identified by similarity to GB:BAC09469.1; match to protein family HMM PF01598 YP_169037.1 identified by similarity to GB:BAB47957.1; match to protein family HMM PF06718 YP_169038.1 identified by similarity to SP:P45382; match to protein family HMM PF00107 YP_169039.1 identified by match to protein family HMM PF07219 YP_169041.1 identified by match to protein family HMM PF02602 YP_169042.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_169043.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_169044.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_169045.1 identified by similarity to GB:BAA34646.1; match to protein family HMM PF04543 YP_169046.1 identified by similarity to GB:BAB50937.1 YP_169047.1 identified by similarity to GB:BAB48836.1 YP_169048.1 identified by similarity to PIR:S77132 YP_169049.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_169050.1 identified by similarity to GB:CAC45660.1 YP_169051.1 identified by match to protein family HMM PF01966 YP_169052.1 identified by similarity to PIR:H84070 YP_169053.1 identified by similarity to SP:P42508; match to protein family HMM PF00072; match to protein family HMM TIGR01199 YP_169054.1 identified by similarity to SP:Q52720; match to protein family HMM PF02630 YP_169055.1 identified by similarity to GB:BAA31475.1; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_169056.1 identified by similarity to GB:AAM48718.1 YP_169057.1 identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_169058.1 identified by similarity to GB:AAM48719.1 YP_169059.1 identified by match to protein family HMM PF00483 YP_169060.1 identified by similarity to GB:AAM48721.1 YP_169061.1 identified by match to protein family HMM PF00580 YP_169062.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_169064.1 identified by similarity to PIR:AB1999; match to protein family HMM TIGR02058 YP_169065.1 identified by similarity to GB:AAF69239.1; match to protein family HMM PF01022; match to protein family HMM PF01451 YP_169066.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_169068.1 heat shock protein involved in degradation of misfolded proteins YP_169069.1 identified by match to protein family HMM TIGR01409 YP_169070.1 heat shock protein involved in degradation of misfolded proteins YP_169072.1 identified by similarity to GB:AAM48726.1; match to protein family HMM PF01713 YP_169073.1 identified by match to protein family HMM PF03562; match to protein family HMM PF06725 YP_169074.1 identified by similarity to PIR:AG3508; match to protein family HMM PF04280 YP_169075.1 identified by similarity to SP:P37147; match to protein family HMM PF04186 YP_169076.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_169077.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 YP_169078.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_169079.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_169080.1 identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_169081.1 identified by match to protein family HMM PF03653 YP_169082.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_169083.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_164832.1 identified by match to protein family HMM PF05721 YP_164834.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_164836.1 identified by match to protein family HMM PF00691 YP_164838.1 identified by match to protein family HMM PF02562 YP_164840.1 identified by similarity to SP:Q8YEA4; match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_164841.1 identified by similarity to GB:AAC62436.1; match to protein family HMM PF00571; match to protein family HMM PF03471 YP_164842.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 YP_164843.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_164844.1 identified by similarity to PIR:S70846 YP_164845.1 identified by similarity to PIR:S61210 YP_164846.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_164847.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_164848.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_164849.1 identified by similarity to PIR:E82434; match to protein family HMM PF04945 YP_164851.1 identified by similarity to GB:BAA31547.1; match to protein family HMM PF01168 YP_164852.1 identified by match to protein family HMM PF01565; match to protein family HMM TIGR01409; match to protein family HMM TIGR01679 YP_164853.1 identified by similarity to SP:P11732; match to protein family HMM PF00034 YP_164854.1 identified by match to protein family HMM PF00440 YP_164855.1 identified by similarity to SP:P42270; match to protein family HMM PF01689 YP_164856.1 identified by match to protein family HMM PF01557 YP_164857.1 identified by similarity to SP:Q05353; similarity to GB:CAB65144.1; match to protein family HMM PF02900 YP_164858.1 identified by similarity to SP:P42269; match to protein family HMM PF00171 YP_164859.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_164860.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_164861.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_164862.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_164863.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_164864.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_164865.1 identified by match to protein family HMM PF00571 YP_164867.1 identified by similarity to SP:P41780; match to protein family HMM PF02424 YP_164868.1 identified by similarity to GB:BAC95347.1 YP_164869.1 identified by match to protein family HMM PF00196 YP_164870.1 identified by similarity to PIR:A83386 YP_164871.1 identified by match to protein family HMM PF02537 YP_164872.1 identified by match to protein family HMM PF02537 YP_164873.1 identified by similarity to GB:AAR21632.1; match to protein family HMM PF05853 YP_164874.1 identified by similarity to GB:AAR21645.1; match to protein family HMM PF00775 YP_164875.1 identified by similarity to GB:AAR21644.1; match to protein family HMM PF00775 YP_164876.1 identified by similarity to SP:P20370; match to protein family HMM PF02627 YP_164877.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_164878.1 identified by similarity to GB:AAR21641.1; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_164880.1 identified by similarity to SP:Q00790; match to protein family HMM PF04205 YP_164881.1 reduces nitrous oxide to nitrogen YP_164882.1 identified by similarity to SP:P19843; match to protein family HMM PF05048 YP_164883.1 identified by similarity to SP:P19844; match to protein family HMM PF00005; match to protein family HMM TIGR01189 YP_164884.1 identified by similarity to SP:P19845 YP_164885.1 identified by similarity to GB:AAD43477.1; match to protein family HMM PF05573 YP_164886.1 identified by match to protein family HMM PF00034 YP_164887.1 identified by match to protein family HMM PF01381 YP_164888.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528 YP_164889.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_164890.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_164891.1 identified by match to protein family HMM PF00165 YP_164892.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_164893.1 identified by similarity to PIR:T08467; match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_164894.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01571 YP_164895.1 identified by similarity to SP:O08557; match to protein family HMM PF02274 YP_164896.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02776 YP_164897.1 identified by similarity to SP:P23034; match to protein family HMM PF00155 YP_164898.1 identified by match to protein family HMM PF00440 YP_164899.1 identified by similarity to SP:P07109; match to protein family HMM PF00005 YP_164900.1 identified by similarity to SP:P39182; similarity to PIR:T44454; match to protein family HMM PF00497 YP_164901.1 identified by similarity to PIR:T44455; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_164902.1 identified by similarity to SP:P35114; similarity to PIR:T44456; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_164903.1 identified by similarity to SP:Q8YF58 YP_164904.1 identified by similarity to SP:Q01257; match to protein family HMM PF01451 YP_164905.1 identified by similarity to PIR:C97388; match to protein family HMM TIGR02096 YP_164906.1 identified by similarity to PIR:B97388 YP_164907.1 identified by match to protein family HMM PF00795 YP_164908.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_164909.1 identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_164910.1 identified by similarity to GB:AAQ00701.1 YP_164911.1 identified by similarity to SP:Q9A5V7; match to protein family HMM PF03884 YP_164913.1 identified by similarity to GB:BAC49897.1 YP_164916.1 identified by match to protein family HMM PF01381 YP_164918.1 identified by match to protein family HMM PF00589 YP_164921.1 identified by match to protein family HMM PF01609 YP_164922.1 identified by similarity to GB:AAR36473.1 YP_164923.1 identified by match to protein family HMM PF01565 YP_164925.1 identified by similarity to GB:BAB49700.1 YP_164926.1 identified by match to protein family HMM PF00850 YP_164927.1 identified by match to protein family HMM PF02653 YP_164928.1 identified by match to protein family HMM PF02653 YP_164929.1 identified by match to protein family HMM PF00005 YP_164930.1 identified by match to protein family HMM PF00005 YP_164931.1 identified by similarity to GB:CAE37397.1; match to protein family HMM TIGR01409 YP_164932.1 identified by match to protein family HMM PF00196 YP_164933.1 identified by similarity to GB:BAB49373.1 YP_164934.1 identified by match to protein family HMM PF00171 YP_164935.1 identified by match to protein family HMM PF01638 YP_164936.1 identified by similarity to PIR:E95217 YP_164937.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_164939.1 identified by similarity to SP:P55740; match to protein family HMM PF01047 YP_164940.1 identified by similarity to GB:BAC48674.1; match to protein family HMM PF01047 YP_164941.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_164942.1 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. YP_164943.1 identified by similarity to SP:O07835; match to protein family HMM PF02775 YP_164944.1 identified by similarity to SP:P80668; match to protein family HMM PF00171 YP_164945.1 identified by match to protein family HMM PF00202 YP_164946.1 identified by match to protein family HMM PF00795 YP_164947.1 identified by similarity to GB:CAA12267.1 YP_164948.1 identified by match to protein family HMM PF01557 YP_164949.1 identified by match to protein family HMM PF01177 YP_164951.1 identified by match to protein family HMM PF01970 YP_164952.1 identified by similarity to GB:BAC94333.1; match to protein family HMM PF03401 YP_164953.1 identified by match to protein family HMM PF00884 YP_164954.1 identified by match to protein family HMM PF01609 YP_164955.1 identified by similarity to GB:AAQ60231.1 YP_164956.1 identified by similarity to PIR:A82083 YP_164958.1 identified by match to protein family HMM PF00106 YP_164959.1 identified by match to protein family HMM PF04199 YP_164960.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01796 YP_164962.1 identified by match to protein family HMM PF00501 YP_164963.1 identified by match to protein family HMM PF00866 YP_164964.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_164965.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_164966.1 identified by match to protein family HMM PF01609 YP_164968.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_164969.1 identified by similarity to GB:AAK24320.1 YP_164970.1 identified by match to protein family HMM PF00583 YP_164971.1 identified by similarity to SP:Q56213; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_164972.1 identified by similarity to PIR:C95361 YP_164973.1 identified by similarity to GB:BAB54840.1 YP_164974.1 identified by match to protein family HMM PF01614 YP_164975.1 identified by similarity to SP:O08374; match to protein family HMM PF00266 YP_164976.1 identified by match to protein family HMM PF00291 YP_164977.1 identified by similarity to GB:BAA31547.1; match to protein family HMM PF01168 YP_164978.1 identified by match to protein family HMM PF02423 YP_164979.1 identified by similarity to SP:P43531 YP_164980.1 identified by match to protein family HMM PF00392 YP_164981.1 identified by match to protein family HMM PF00165 YP_164982.1 identified by match to protein family HMM PF00034 YP_164983.1 identified by match to protein family HMM PF03150 YP_164986.1 identified by match to protein family HMM PF00092; match to protein family HMM PF00353 YP_164988.1 nducibly transcribed; Denger et al. Biochem. J. (2006) 394:657-664 YP_164989.1 Catalyzes the desulfonation of L-cysteate to sulfite, ammonium ion and pyruvate. YP_164990.1 transcriptional regulator, LysR family, presumably for cysteate degradation; identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Denger et al. Biochem. J. (2006) 394:657-664 YP_164991.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_164992.1 identified by match to protein family HMM PF04290 YP_164993.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409 YP_164994.1 identified by similarity to SP:P13702; match to protein family HMM PF00368; match to protein family HMM TIGR00532 YP_164995.1 identified by match to protein family HMM PF00392 YP_164996.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_164997.1 identified by similarity to SP:P12920; match to protein family HMM TIGR02122 YP_164998.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR02123 YP_164999.1 identified by match to protein family HMM PF01266 YP_165000.1 identified by match to protein family HMM PF03473 YP_165001.1 identified by match to protein family HMM PF01047 YP_165002.1 identified by similarity to GB:BAC91536.1 YP_165003.1 identified by similarity to GB:BAC91595.1 YP_165004.1 identified by similarity to GB:CAD84048.1 YP_165005.1 identified by match to protein family HMM PF03473 YP_165006.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_165007.1 identified by similarity to GB:AAM38898.1 YP_165008.1 identified by similarity to SP:P11721; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165009.1 identified by match to protein family HMM PF00034 YP_165010.1 identified by match to protein family HMM PF01226 YP_165012.1 identified by match to protein family HMM PF02630 YP_165013.1 identified by similarity to SP:P33518; match to protein family HMM PF00115 YP_165014.1 identified by similarity to SP:P98052 YP_165015.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_165016.1 identified by similarity to GB:AAC72074.1; match to protein family HMM PF00034; match to protein family HMM TIGR00782 YP_165017.1 identified by similarity to GB:AAM76066.1; match to protein family HMM PF05545 YP_165018.1 identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781 YP_165019.1 identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780 YP_165022.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_165023.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_165024.1 identified by similarity to GB:AAM30460.1 YP_165025.1 identified by similarity to SP:P45406; match to protein family HMM PF03918 YP_165026.1 identified by similarity to SP:P33926; match to protein family HMM TIGR00385 YP_165027.1 identified by similarity to SP:Q00500; match to protein family HMM PF01578 YP_165028.1 identified by match to protein family HMM PF00392 YP_165029.1 identified by similarity to GB:CAD86250.1 YP_165030.1 identified by similarity to SP:Q50925 YP_165031.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_165034.1 identified by match to protein family HMM PF00082 YP_165035.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_165036.1 identified by match to protein family HMM PF00211; match to protein family HMM PF00536; match to protein family HMM PF06498 YP_165037.1 identified by similarity to SP:P43485; match to protein family HMM PF01565 YP_165038.1 identified by similarity to GB:AAQ59009.1; match to protein family HMM PF01266 YP_165039.1 identified by similarity to GB:BAC71325.1; match to protein family HMM PF00892 YP_165040.1 identified by match to protein family HMM PF02690 YP_165042.1 identified by match to protein family HMM PF00510 YP_165043.1 identified by similarity to GB:AAC45374.1 YP_165044.1 identified by similarity to SP:Q51664 YP_165045.1 identified by similarity to GB:AAC45372.1; match to protein family HMM PF00115 YP_165046.1 identified by similarity to SP:Q51662; match to protein family HMM PF00034 YP_165047.1 identified by match to protein family HMM PF01544 YP_165048.1 identified by match to protein family HMM PF05940 YP_165049.1 identified by similarity to SP:P24474; match to protein family HMM PF00034; match to protein family HMM PF02239 YP_165050.1 identified by similarity to SP:Q51701; match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_165051.1 identified by similarity to SP:Q51702 YP_165052.1 identified by similarity to SP:Q51480; match to protein family HMM PF02239 YP_165053.1 appears to be fusion of nirD and nir; Lidentified by similarity to PIR:G83581; match to protein family HMM PF01037 YP_165054.1 identified by similarity to SP:Q52524 YP_165055.1 identified by similarity to SP:Q52525 YP_165056.1 identified by similarity to PIR:C83581; match to protein family HMM PF04055 YP_165057.1 identified by similarity to GB:BAA12683.1; match to protein family HMM PF00034; match to protein family HMM PF02239 YP_165059.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165060.1 identified by similarity to SP:P14177; match to protein family HMM PF04069 YP_165061.1 identified by similarity to SP:P46920; match to protein family HMM PF00005; match to protein family HMM TIGR01186 YP_165062.1 identified by similarity to SP:P14176; match to protein family HMM PF00528 YP_165063.1 identified by similarity to SP:Q9BSE5; match to protein family HMM PF00491 YP_165064.1 identified by similarity to SP:Q9BSE5; match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_165065.1 identified by similarity to SP:P10047; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_165066.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_165067.1 identified by similarity to SP:P37735; match to protein family HMM PF03480 YP_165068.1 identified by match to protein family HMM PF04290 YP_165069.1 identified by match to protein family HMM PF06808 YP_165070.1 identified by match to protein family HMM PF03758 YP_165071.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_165072.1 identified by match to protein family HMM PF00171 YP_165073.1 identified by match to protein family HMM PF00701 YP_165074.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_165075.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_165076.1 identified by similarity to GB:AAM32283.1 YP_165077.1 identified by similarity to GB:AAD03997.1 YP_165078.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_165079.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_165080.1 identified by match to protein family HMM PF04290 YP_165081.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_165082.1 identified by similarity to SP:P02925; similarity to SP:P54300 YP_165083.1 identified by similarity to SP:P36948; match to protein family HMM PF02653 YP_165084.1 identified by match to protein family HMM PF00005 YP_165085.1 identified by match to protein family HMM PF00532 YP_165086.1 identified by similarity to SP:P36948; match to protein family HMM PF02653 YP_165087.1 identified by similarity to SP:P36947; match to protein family HMM PF00005 YP_165088.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_165089.1 identified by match to protein family HMM PF00171 YP_165090.1 identified by match to protein family HMM PF00392 YP_165091.1 identified by match to protein family HMM PF01266 YP_165092.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_165093.1 identified by match to protein family HMM PF04290 YP_165094.1 identified by match to protein family HMM PF03480 YP_165095.1 identified by similarity to GB:CAB71312.1; match to protein family HMM PF05544 YP_165096.1 identified by match to protein family HMM PF00701 YP_165097.1 identified by match to protein family HMM PF01614 YP_165098.1 identified by similarity to GB:BAB65016.1 YP_165099.1 identified by similarity to PIR:G81801 YP_165100.1 identified by similarity to SP:Q49128; match to protein family HMM PF03150 YP_165101.1 identified by similarity to SP:P45382; match to protein family HMM PF00107 YP_165102.1 identified by match to protein family HMM PF01381 YP_165103.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_165104.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_165105.1 identified by similarity to GB:AAC04474.1; match to protein family HMM PF00294 YP_165106.1 identified by match to protein family HMM PF00561 YP_165107.1 identified by match to protein family HMM PF06808 YP_165108.1 identified by match to protein family HMM PF04290 YP_165109.1 identified by match to protein family HMM PF03480 YP_165110.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165111.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_165112.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_165113.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165114.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA YP_165115.1 identified by match to protein family HMM PF01965 YP_165116.1 identified by similarity to GB:BAB86294.1; similarity to GB:CAA10043.1; match to protein family HMM PF02629 YP_165117.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_165118.1 identified by match to protein family HMM PF00165 YP_165120.1 identified by similarity to GB:AAO91868.1; match to protein family HMM PF01063 YP_165121.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_165122.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_165123.1 identified by similarity to SP:Q05197 YP_165124.1 identified by similarity to SP:Q00924; match to protein family HMM PF01177 YP_165125.1 identified by similarity to SP:P21630; match to protein family HMM PF00005 YP_165126.1 identified by similarity to SP:P22730; match to protein family HMM PF00005 YP_165127.1 identified by similarity to SP:P22729; match to protein family HMM PF02653 YP_165128.1 identified by match to protein family HMM PF02653 YP_165129.1 Assignment partly based on membership in branched-chain amino acide ABC transporter gene cluster; identified by similarity to SP:P02917; similarity to SP:P04816 YP_165130.1 identified by match to protein family HMM PF00392 YP_165131.1 identified by match to protein family HMM PF00589 YP_165132.1 identified by similarity to GB:AAN05123.1; match to protein family HMM PF02195 YP_165133.1 identified by similarity to PIR:AI3232; match to protein family HMM PF00991 YP_165135.1 identified by similarity to SP:P46837; match to protein family HMM PF00575 YP_165136.1 identified by similarity to SP:Q84H44; match to protein family HMM PF00205; match to protein family HMM PF02776 YP_165137.1 identified by match to protein family HMM PF01571 YP_165138.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01571 YP_165139.1 identified by similarity to SP:P24630; match to protein family HMM PF00202 YP_165140.1 identified by match to protein family HMM PF06253 YP_165141.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165142.1 identified by similarity to SP:P50216; match to protein family HMM PF03971; match to protein family HMM TIGR00178 YP_165143.1 identified by match to protein family HMM PF01979 YP_165144.1 identified by match to protein family HMM PF01037 YP_165145.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_165146.1 identified by match to protein family HMM PF00456; match to protein family HMM PF02779 YP_165147.1 identified by similarity to SP:Q05354; match to protein family HMM PF02962 YP_165148.1 identified by match to protein family HMM PF00903 YP_165149.1 identified by similarity to GB:AAQ61367.1; match to protein family HMM PF01170 YP_165150.1 identified by match to protein family HMM PF00027 YP_165152.1 identified by match to protein family HMM PF03060 YP_165153.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165154.1 identified by similarity to GB:AAF36413.1 YP_165155.1 identified by similarity to GB:BAB49961.1 YP_165156.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_165157.1 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182; 4-hydroxy-2-oxoglutarate aldolase YP_165158.1 identified by similarity to SP:P50845; match to protein family HMM PF00294 YP_165159.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_165160.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_165162.1 identified by match to protein family HMM PF03480 YP_165163.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_165165.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_165166.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_165167.1 identified by match to protein family HMM PF01361 YP_165171.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_165172.1 identified by match to protein family HMM PF00248 YP_165173.1 identified by match to protein family HMM PF02627 YP_165175.1 identified by similarity to GB:AAQ60836.1 YP_165176.1 identified by match to protein family HMM PF00892 YP_165179.1 identified by match to protein family HMM PF00202 YP_165180.1 identified by match to protein family HMM PF00171 YP_165181.1 identified by match to protein family HMM PF00202 YP_165182.1 identified by similarity to GB:AAN34322.1 YP_165183.1 identified by similarity to SP:Q8YDP7; match to protein family HMM PF06792 YP_165184.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_165185.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_165186.1 identified by match to protein family HMM PF00034 YP_165187.1 identified by similarity to GB:AAD24211.1; match to protein family HMM TIGR01409 YP_165188.1 identified by match to protein family HMM PF00034 YP_165189.1 identified by similarity to PIR:A49232; match to protein family HMM PF01323 YP_165191.1 identified by similarity to GB:AAM42746.1 YP_165192.1 identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_165193.1 identified by similarity to SP:P77400; match to protein family HMM PF00324 YP_165194.1 identified by match to protein family HMM PF00664 YP_165195.1 identified by similarity to GB:AAF32271.1 YP_165196.1 identified by similarity to SP:P12375 YP_165197.1 identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM TIGR01480 YP_165199.1 identified by match to protein family HMM PF04290 YP_165200.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_165201.1 identified by similarity to SP:P37735; match to protein family HMM PF03480 YP_165202.1 identified by match to protein family HMM PF00392 YP_165203.1 identified by match to protein family HMM PF06441 YP_165204.1 identified by match to protein family HMM PF00171 YP_165205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_165206.1 identified by match to protein family HMM PF00392 YP_165207.1 identified by similarity to GB:CAE41123.1 YP_165208.1 Assignment partly based on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF01547 YP_165209.1 identified by similarity to SP:P31134; match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_165210.1 Assignment partly based on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528 YP_165211.1 identified by match to protein family HMM PF00528 YP_165212.1 identified by similarity to GB:CAE33186.1 YP_165213.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_165214.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_165216.1 identified by match to protein family HMM PF00376 YP_165217.1 identified by similarity to PIR:T44602; match to protein family HMM PF00884 YP_165218.1 identified by match to protein family HMM PF00027 YP_165219.1 identified by match to protein family HMM PF04542 YP_165220.1 identified by similarity to GB:AAA73405.1 YP_165224.1 identified by similarity to GB:AAQ58401.1 YP_165225.1 identified by similarity to GB:AAA73405.1 YP_165226.1 identified by similarity to GB:AAA73405.1 YP_165227.1 identified by match to protein family HMM PF01042 YP_165228.1 identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501 YP_165229.1 identified by similarity to SP:P16558 YP_165230.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_165231.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_165232.1 identified by match to protein family HMM PF01047 YP_165233.1 identified by similarity to SP:O86034; match to protein family HMM PF00106 YP_165234.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA YP_165235.1 identified by similarity to GB:BAC49422.1 YP_165236.1 identified by match to protein family HMM PF03301 YP_165239.1 identified by match to protein family HMM PF00941; match to protein family HMM PF03450 YP_165240.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_165241.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_165242.1 identified by similarity to PIR:B95401 YP_165243.1 identified by similarity to GB:BAC52076.1 YP_165244.1 identified by match to protein family HMM PF00392 YP_165245.1 identified by similarity to GB:AAL99356.1; match to protein family HMM PF00205; match to protein family HMM PF02776 YP_165246.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_165248.1 identified by match to protein family HMM PF01243 YP_165249.1 identified by similarity to GB:AAN68558.1; match to protein family HMM PF07080 YP_165250.1 identified by match to protein family HMM PF00440 YP_165251.1 identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_165252.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_165253.1 identified by match to protein family HMM PF00165 YP_165254.1 identified by match to protein family HMM PF01022 YP_165255.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_165256.1 identified by match to protein family HMM PF01546 YP_165257.1 identified by match to protein family HMM PF00107 YP_165258.1 identified by similarity to SP:P02982 YP_165259.1 identified by similarity to SP:P32427; match to protein family HMM PF00206 YP_165260.1 identified by similarity to GB:AAF66687.1 YP_165261.1 identified by similarity to GB:AAL02408.1; match to protein family HMM PF00561 YP_165262.1 identified by match to protein family HMM PF00291 YP_165263.1 identified by match to protein family HMM PF00561 YP_165264.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_165265.1 identified by match to protein family HMM PF00254 YP_165266.1 identified by similarity to SP:P29132; match to protein family HMM PF00106 YP_165267.1 identified by similarity to SP:P14926; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_165268.1 identified by similarity to GB:CAE06700.1 YP_165271.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_165272.1 identified by match to protein family HMM PF01475 YP_165273.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466