; compare-families -q Saccharomyces_cerevisiae_TF_targets.tab -r Saccharomyces_cerevisiae_regulons_TFGC.tab -lth occ 2 -lth sig 0 -o lee_vs_regulons.tab -dot lee_vs_regulons.dot -v 1
; Input files
; ref_families Saccharomyces_cerevisiae_regulons_TFGC.tab
; query_families Saccharomyces_cerevisiae_TF_targets.tab
; Query families 106
; Reference families 162
; Population size 2527
; Sort key name
; Thresholds lower upper
; occ 2 NA
; sig 0 NA
; Output files
; output lee_vs_regulons.tab
ref |
query |
ref# |
query# |
common# |
ABF1 |
ABF1 |
14 |
282 |
5 |
ARO80 |
ARO80 |
2 |
33 |
2 |
BAS1 |
BAS1 |
13 |
44 |
10 |
BAS1 |
GCN4 |
13 |
80 |
2 |
CAT8 |
ABF1 |
10 |
282 |
3 |
CAT8 |
SIP4 |
10 |
10 |
3 |
CUP2 |
CAD1 |
3 |
39 |
2 |
CUP2 |
PHO4 |
3 |
62 |
2 |
DAL80 |
DAL82 |
13 |
13 |
2 |
DAL80 |
PUT3 |
13 |
9 |
2 |
DAL80 |
SUM1 |
13 |
63 |
2 |
DAL81 |
DAL82 |
6 |
13 |
2 |
DAL81 |
SUM1 |
6 |
63 |
2 |
DAL82 |
DAL82 |
5 |
13 |
2 |
DAL82 |
SUM1 |
5 |
63 |
2 |
DUN1 |
RFX1 |
3 |
32 |
2 |
FAU1 |
BAS1 |
3 |
44 |
3 |
GAL4 |
GAL4 |
7 |
40 |
3 |
GCN4 |
ARG80 |
35 |
17 |
3 |
GCN4 |
ARG81 |
35 |
22 |
4 |
GCN4 |
BAS1 |
35 |
44 |
6 |
GCN4 |
GCN4 |
35 |
80 |
11 |
GCN4 |
GLN3 |
35 |
15 |
2 |
GCN4 |
LEU3 |
35 |
23 |
2 |
GLN3 |
DAL82 |
19 |
13 |
2 |
GLN3 |
GCN4 |
19 |
80 |
2 |
GLN3 |
GLN3 |
19 |
15 |
2 |
GLN3 |
PUT3 |
19 |
9 |
2 |
GLN3 |
SUM1 |
19 |
63 |
2 |
HAP2 |
ABF1 |
6 |
282 |
2 |
HAP3 |
ABF1 |
6 |
282 |
2 |
HAP4 |
ABF1 |
7 |
282 |
2 |
HAP5 |
ABF1 |
6 |
282 |
2 |
HSF1 |
CAD1 |
7 |
39 |
2 |
HSF1 |
PHO4 |
7 |
62 |
2 |
HSF1 |
RAP1 |
7 |
209 |
2 |
INO2 |
ABF1 |
11 |
282 |
2 |
INO2 |
INO2 |
11 |
11 |
3 |
INO2 |
INO4 |
11 |
19 |
7 |
INO4 |
ABF1 |
11 |
282 |
2 |
INO4 |
INO2 |
11 |
11 |
3 |
INO4 |
INO4 |
11 |
19 |
7 |
LEU3 |
DAL81 |
7 |
40 |
2 |
LEU3 |
GCN4 |
7 |
80 |
2 |
LEU3 |
LEU3 |
7 |
23 |
4 |
MAC1 |
MAC1 |
4 |
37 |
3 |
MATALPHA2 |
MCM1 |
2 |
89 |
2 |
MATALPHA2 |
STE12 |
2 |
57 |
2 |
MBP1 |
MBP1 |
5 |
112 |
3 |
MBP1 |
SWI4 |
5 |
136 |
2 |
MBP1 |
SWI6 |
5 |
96 |
2 |
MCM1 |
GCN4 |
4 |
80 |
2 |
MET4 |
CBF1 |
6 |
45 |
2 |
MET4 |
MET31 |
6 |
29 |
2 |
MET4 |
MET4 |
6 |
29 |
2 |
MIG1 |
FHL1 |
14 |
194 |
2 |
MIG1 |
PHD1 |
14 |
91 |
3 |
MOT3 |
DIG1 |
6 |
38 |
2 |
MOT3 |
STE12 |
6 |
57 |
2 |
MSN2 |
SWI5 |
11 |
98 |
2 |
MSN4 |
SWI5 |
10 |
98 |
2 |
OPI1 |
INO4 |
4 |
19 |
3 |
PDR1 |
CIN5 |
5 |
147 |
2 |
PDR1 |
NRG1 |
5 |
82 |
2 |
PDR1 |
YAP6 |
5 |
89 |
2 |
PDR3 |
CIN5 |
5 |
147 |
2 |
PDR3 |
NRG1 |
5 |
82 |
2 |
PDR3 |
YAP6 |
5 |
89 |
2 |
PHO2 |
BAS1 |
15 |
44 |
9 |
PHO2 |
GCN4 |
15 |
80 |
2 |
PHO4 |
PUT3 |
6 |
9 |
2 |
PUT3 |
PUT3 |
2 |
9 |
2 |
RAD9 |
RFX1 |
2 |
32 |
2 |
RAP1 |
FHL1 |
20 |
194 |
4 |
RAP1 |
INO4 |
20 |
19 |
2 |
RAP1 |
RAP1 |
20 |
209 |
5 |
RCS1 |
MAC1 |
7 |
37 |
3 |
REB1 |
INO2 |
11 |
11 |
2 |
REB1 |
INO4 |
11 |
19 |
2 |
REB1 |
RAP1 |
11 |
209 |
2 |
RFX1 |
RFX1 |
4 |
32 |
3 |
ROX1 |
CIN5 |
12 |
147 |
2 |
ROX1 |
SKN7 |
12 |
105 |
2 |
ROX1 |
YAP6 |
12 |
89 |
2 |
SNF2 |
CIN5 |
6 |
147 |
2 |
STE12 |
MBP1 |
8 |
112 |
2 |
STE12 |
MCM1 |
8 |
89 |
4 |
STE12 |
NDD1 |
8 |
97 |
3 |
STE12 |
STE12 |
8 |
57 |
4 |
STE12 |
SWI4 |
8 |
136 |
2 |
STE7 |
MBP1 |
3 |
112 |
2 |
STE7 |
NDD1 |
3 |
97 |
2 |
STE7 |
SWI4 |
3 |
136 |
2 |
SWI1 |
CIN5 |
5 |
147 |
2 |
SWI5 |
SWI4 |
3 |
136 |
2 |
SWI6 |
MBP1 |
4 |
112 |
2 |
SWI6 |
SWI4 |
4 |
136 |
2 |
TEC1 |
FKH2 |
4 |
108 |
2 |
TEC1 |
MBP1 |
4 |
112 |
3 |
TEC1 |
NDD1 |
4 |
97 |
2 |
ref |
query |
ref# |
query# |
common# |
TEC1 |
SWI4 |
4 |
136 |
3 |
TEC1 |
SWI6 |
4 |
96 |
2 |
TUP1 |
RFX1 |
7 |
32 |
2 |
TUP1 |
STE12 |
7 |
57 |
2 |
UME6 |
INO4 |
11 |
19 |
2 |
URE2 |
PUT3 |
4 |
9 |
2 |
VID30 |
DAL82 |
8 |
13 |
2 |
VID30 |
GLN3 |
8 |
15 |
2 |
VID30 |
SUM1 |
8 |
63 |
2 |
XBP1 |
FKH2 |
5 |
108 |
2 |
XBP1 |
MCM1 |
5 |
89 |
2 |
XBP1 |
NDD1 |
5 |
97 |
2 |
XBP1 |
SWI4 |
5 |
136 |
2 |
YKU70 |
RFX1 |
2 |
32 |
2 |
ZAP1 |
ZAP1 |
5 |
24 |
4 |
; Job started 2003_01_24.235323
; Job done 2003_01_24.235337